Query 046789
Match_columns 336
No_of_seqs 106 out of 1172
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:19:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ry7_A Ribokinase; transferase 100.0 1.8E-42 6E-47 318.4 17.3 272 4-332 19-303 (304)
2 2rbc_A Sugar kinase, AGR_C_456 100.0 1.8E-41 6.3E-46 317.1 23.1 268 4-331 46-323 (343)
3 2fv7_A Ribokinase; structural 100.0 5.4E-41 1.8E-45 312.4 21.1 275 4-335 41-331 (331)
4 3iq0_A Putative ribokinase II; 100.0 4.3E-40 1.5E-44 306.1 25.8 259 15-332 33-308 (330)
5 1rkd_A Ribokinase; carbohydrat 100.0 7.3E-41 2.5E-45 308.4 18.3 272 4-332 21-303 (309)
6 3ikh_A Carbohydrate kinase; tr 100.0 2.9E-41 9.9E-46 309.9 14.9 258 3-332 18-284 (299)
7 3ljs_A Fructokinase; fructokia 100.0 7.8E-41 2.7E-45 312.1 15.5 269 6-332 23-324 (338)
8 4du5_A PFKB; structural genomi 100.0 1E-39 3.4E-44 304.5 23.0 261 14-333 53-334 (336)
9 3kzh_A Probable sugar kinase; 100.0 1.3E-40 4.5E-45 309.3 16.8 272 4-332 23-305 (328)
10 2c4e_A Sugar kinase MJ0406; tr 100.0 3.6E-40 1.2E-44 303.0 17.5 263 4-332 22-295 (302)
11 3vas_A Putative adenosine kina 100.0 3.7E-40 1.3E-44 311.3 17.9 272 6-331 63-365 (370)
12 3h49_A Ribokinase; transferase 100.0 1.6E-39 5.6E-44 301.6 21.6 261 12-332 36-310 (325)
13 3uq6_A Adenosine kinase, putat 100.0 2.6E-39 9E-44 305.7 21.8 268 13-332 77-368 (372)
14 3ktn_A Carbohydrate kinase, PF 100.0 3.1E-39 1.1E-43 302.2 21.4 262 13-332 28-327 (346)
15 3pl2_A Sugar kinase, ribokinas 100.0 5.8E-39 2E-43 296.9 22.2 258 15-332 37-313 (319)
16 3hj6_A Fructokinase, FRK; fruc 100.0 4.8E-40 1.7E-44 305.4 14.8 260 13-332 48-323 (327)
17 3ie7_A LIN2199 protein; phosph 100.0 7.3E-39 2.5E-43 296.5 22.6 265 3-332 19-299 (320)
18 1vm7_A Ribokinase; TM0960, str 100.0 4E-39 1.4E-43 297.3 20.4 266 3-332 30-306 (311)
19 4e3a_A Sugar kinase protein; s 100.0 5.5E-39 1.9E-43 301.3 20.7 259 15-333 76-349 (352)
20 1v1a_A 2-keto-3-deoxygluconate 100.0 4E-38 1.4E-42 290.2 25.9 254 14-332 28-299 (309)
21 2nwh_A AGR_C_3442P, carbohydra 100.0 2.6E-39 9E-44 299.2 18.1 274 5-332 21-303 (317)
22 3loo_A Anopheles gambiae adeno 100.0 8.5E-39 2.9E-43 301.5 21.8 265 14-333 75-364 (365)
23 3go6_A Ribokinase RBSK; phosph 100.0 3.9E-39 1.3E-43 297.2 18.1 251 4-332 36-300 (310)
24 2qcv_A Putative 5-dehydro-2-de 100.0 2.2E-38 7.7E-43 294.6 22.9 263 13-332 38-321 (332)
25 3lhx_A Ketodeoxygluconokinase; 100.0 4.1E-38 1.4E-42 291.4 21.9 264 12-330 22-310 (319)
26 2v78_A Fructokinase; transfera 100.0 3.5E-38 1.2E-42 291.0 20.9 255 14-331 28-305 (313)
27 3otx_A Adenosine kinase, putat 100.0 3.2E-38 1.1E-42 295.4 20.8 262 14-330 59-345 (347)
28 3umo_A 6-phosphofructokinase i 100.0 3.4E-38 1.2E-42 290.6 20.4 268 3-332 18-302 (309)
29 2hlz_A Ketohexokinase; non-pro 100.0 1.1E-37 3.8E-42 287.7 23.5 261 4-321 34-309 (312)
30 3b1n_A Ribokinase, putative; r 100.0 3.8E-38 1.3E-42 292.6 19.3 260 5-332 28-301 (326)
31 2ajr_A Sugar kinase, PFKB fami 100.0 1.1E-37 3.6E-42 290.2 21.0 266 4-332 29-320 (331)
32 1tyy_A Putative sugar kinase; 100.0 7.4E-39 2.5E-43 299.0 13.0 260 11-331 42-324 (339)
33 2afb_A 2-keto-3-deoxygluconate 100.0 8.5E-38 2.9E-42 293.0 20.2 269 5-331 23-338 (351)
34 2jg1_A Tagatose-6-phosphate ki 100.0 1.6E-37 5.3E-42 288.9 21.7 264 4-332 37-320 (330)
35 2pkf_A Adenosine kinase; trans 100.0 2.9E-38 9.8E-43 294.4 16.4 265 5-332 38-315 (334)
36 2dcn_A Hypothetical fructokina 100.0 8.8E-38 3E-42 288.0 18.6 255 14-332 28-304 (311)
37 2f02_A Tagatose-6-phosphate ki 100.0 2.7E-37 9.2E-42 286.4 20.3 263 4-331 19-302 (323)
38 3cqd_A 6-phosphofructokinase i 100.0 3.5E-37 1.2E-41 283.7 20.8 264 4-332 19-302 (309)
39 4e69_A 2-dehydro-3-deoxyglucon 100.0 8.3E-37 2.8E-41 283.8 22.4 251 12-322 43-317 (328)
40 3ewm_A Uncharacterized sugar k 100.0 7.9E-37 2.7E-41 282.0 20.8 250 13-332 27-296 (313)
41 1bx4_A Protein (adenosine kina 100.0 1.1E-36 3.9E-41 284.6 21.0 262 13-329 57-343 (345)
42 2abq_A Fructose 1-phosphate ki 100.0 1.3E-36 4.4E-41 279.7 20.3 260 4-331 17-292 (306)
43 4e84_A D-beta-D-heptose 7-phos 100.0 1.7E-37 5.9E-42 291.0 13.5 253 15-331 90-351 (352)
44 2jg5_A Fructose 1-phosphate ki 100.0 1.5E-36 5.2E-41 279.0 19.0 258 4-331 17-292 (306)
45 4gm6_A PFKB family carbohydrat 100.0 8.2E-37 2.8E-41 286.3 15.8 261 14-331 51-339 (351)
46 3kd6_A Carbohydrate kinase, PF 100.0 2.8E-36 9.7E-41 278.4 18.5 264 5-332 14-293 (313)
47 1vk4_A PFKB carbohydrate kinas 100.0 3.9E-37 1.3E-41 282.3 12.2 262 4-335 16-297 (298)
48 2qhp_A Fructokinase; NP_810670 100.0 6.7E-36 2.3E-40 273.5 18.3 250 16-324 21-287 (296)
49 3bf5_A Ribokinase related prot 100.0 1.3E-36 4.4E-41 279.8 12.1 246 4-331 37-295 (306)
50 2abs_A Adenosine kinase, AK; r 100.0 4.5E-35 1.5E-39 277.7 21.3 251 14-321 83-375 (383)
51 2yxt_A Pyridoxal kinase; beta 99.8 1.7E-21 5.9E-26 179.2 9.2 209 35-317 12-269 (312)
52 2ddm_A Pyridoxine kinase; pyri 99.8 1.5E-20 5E-25 170.6 11.1 216 32-320 19-269 (283)
53 1jxh_A Phosphomethylpyrimidine 99.8 1.9E-19 6.6E-24 163.7 10.1 151 114-318 94-269 (288)
54 1ub0_A THID, phosphomethylpyri 99.8 1.2E-18 4E-23 155.9 10.1 151 114-318 70-244 (258)
55 2i5b_A Phosphomethylpyrimidine 99.7 5.2E-17 1.8E-21 146.2 15.2 151 114-318 74-250 (271)
56 3pzs_A PM kinase, pyridoxamine 99.6 1E-15 3.6E-20 139.1 10.9 152 112-318 75-260 (289)
57 3h74_A Pyridoxal kinase; PSI-I 99.6 3.2E-15 1.1E-19 135.3 11.5 165 114-333 74-264 (282)
58 3mbh_A Putative phosphomethylp 99.6 4.4E-15 1.5E-19 135.1 10.9 166 114-333 77-273 (291)
59 3zs7_A Pyridoxal kinase; trans 99.5 7.7E-14 2.6E-18 127.3 10.9 155 113-317 75-261 (300)
60 1ekq_A Hydroxyethylthiazole ki 99.3 6.6E-12 2.3E-16 112.9 12.2 145 109-309 53-223 (272)
61 3rm5_A Hydroxymethylpyrimidine 99.2 7.4E-11 2.5E-15 116.2 10.7 146 113-310 90-268 (550)
62 1v8a_A Hydroxyethylthiazole ki 98.8 4.8E-09 1.7E-13 93.7 7.8 155 97-310 41-220 (265)
63 3bgk_A SMU.573, putative uncha 98.5 1.3E-06 4.6E-11 79.5 13.1 149 108-315 119-283 (311)
64 3dzv_A 4-methyl-5-(beta-hydrox 98.4 5E-06 1.7E-10 74.1 14.5 157 97-310 43-229 (273)
65 2r3b_A YJEF-related protein; p 98.3 2E-06 6.9E-11 78.3 10.1 142 109-314 106-265 (310)
66 3rpz_A ADP/ATP-dependent NAD(P 98.3 3.2E-06 1.1E-10 75.7 9.7 139 112-309 96-244 (279)
67 3rss_A Putative uncharacterize 98.2 7.8E-06 2.7E-10 79.1 12.6 158 98-314 306-473 (502)
68 3drw_A ADP-specific phosphofru 98.0 6.5E-05 2.2E-09 71.5 12.6 155 15-175 113-318 (474)
69 1ua4_A Glucokinase, ADP-depend 97.7 5.5E-05 1.9E-09 72.0 7.7 151 17-174 109-300 (455)
70 3nl6_A Thiamine biosynthetic b 97.5 0.00079 2.7E-08 65.6 12.5 80 96-177 289-380 (540)
71 1gc5_A ADP-dependent glucokina 97.5 0.0016 5.6E-08 61.9 13.6 150 17-173 117-312 (467)
72 3hpd_A Hydroxyethylthiazole ki 97.2 0.0011 3.9E-08 58.4 8.9 67 109-175 51-129 (265)
73 1l2l_A ADP-dependent glucokina 97.0 0.0017 5.7E-08 61.7 8.1 150 17-173 112-302 (457)
74 3k5w_A Carbohydrate kinase; 11 95.0 0.015 5.1E-07 55.7 4.0 141 113-314 291-445 (475)
75 1ztd_A Hypothetical protein PF 32.6 46 0.0016 24.6 3.7 31 276-306 63-94 (133)
76 2dha_A FLJ20171 protein; RRM d 28.1 82 0.0028 23.4 4.7 43 18-60 7-49 (123)
77 1y8q_A Ubiquitin-like 1 activa 27.3 2.1E+02 0.0072 25.5 8.1 35 110-144 121-155 (346)
78 2lxi_A RNA-binding protein 10; 27.0 79 0.0027 21.8 4.3 46 35-80 2-51 (91)
79 1jw9_B Molybdopterin biosynthe 26.9 2.8E+02 0.0095 23.2 10.0 36 109-144 116-151 (249)
80 1zud_1 Adenylyltransferase THI 26.4 2.9E+02 0.0098 23.2 9.9 35 109-143 113-147 (251)
81 2re2_A Uncharacterized protein 25.3 29 0.001 26.6 1.7 39 19-63 65-103 (136)
82 2jvr_A Nucleolar protein 3; RN 25.0 1.2E+02 0.0042 22.0 5.1 46 36-81 30-75 (111)
83 1jzt_A Hypothetical 27.5 kDa p 23.9 69 0.0023 27.3 4.0 44 17-61 69-115 (246)
84 2fcj_A Small toprim domain pro 23.3 91 0.0031 23.4 4.1 78 108-189 19-103 (119)
85 2bfd_A 2-oxoisovalerate dehydr 22.6 3.7E+02 0.013 24.5 9.0 34 113-146 246-283 (400)
86 1rdu_A Conserved hypothetical 21.0 41 0.0014 24.7 1.7 40 19-63 48-87 (116)
87 3vzx_A Heptaprenylglyceryl pho 20.8 3E+02 0.01 23.0 7.3 49 112-164 29-80 (228)
No 1
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Probab=100.00 E-value=1.8e-42 Score=318.38 Aligned_cols=272 Identities=20% Similarity=0.315 Sum_probs=229.3
Q ss_pred CCCCCCCCCce------EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 4 DPLPPLPENRI------VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 4 ~~~~p~~~~~~------~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
++.+|.++++. +..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++
T Consensus 19 ~~~~p~~g~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~~T~~~~ 98 (304)
T 3ry7_A 19 VERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAF 98 (304)
T ss_dssp CSSCCCTTCCCCCSSCCEEEEECHHHHHHHHHHHTTCEEEEECEEESSCTTHHHHHHHHHTTCBCTTCEEESSSCCEEEE
T ss_pred ccCCCCCCCceecccceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCChHHHHHHHHHHHcCCcchhEEEcCCCCCcEEE
Confidence 67788887765 389999999999999999999999999999999999999999999999999887788899999
Q ss_pred EEEcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH-HHHHHHHHHHHhCCCcEEEeCCcchHhHHH
Q 046789 78 VIVDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLP-DTAIIVAQEAARKNIPILIDTERQRERIDE 155 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~ 155 (336)
++++.+|.++... .+++ ..+++++++. ..+.++.++++++++..+ +.+..+++.++++++++++|+....+....
T Consensus 99 ~~~~~~g~~~~~~-~~ga~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~~~~~~ 175 (304)
T 3ry7_A 99 ITVNAEGQNTIYV-YGGANMTMTPEDVIN--AKDAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPAKALPNE 175 (304)
T ss_dssp EEECSSCCEEEEE-ECGGGGGCCHHHHHT--THHHHHTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCSCCCCCHH
T ss_pred EEECCCCCEEEEE-ecCchhcCCHHHHHH--HHHHhccCCEEEEcCCCCHHHHHHHHHHHHHcCCEEEEeCCccccccHH
Confidence 9998776555444 4443 3677766654 345688999999988765 677789999999999999999755456678
Q ss_pred hhhcCcEEecCcccchhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHh
Q 046789 156 FLKLASYAVCSAKFPQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLK 231 (336)
Q Consensus 156 ~l~~~dil~~n~~e~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (336)
+++++|++++|++|+..+++... ..+.+++.+.+. +++.+++|+|++|++++.+++..
T Consensus 176 ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~-g~~~vvvt~G~~G~~~~~~~~~~----------------- 237 (304)
T 3ry7_A 176 LLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSI-GIKTVLITLGKQGTYFATKNQSQ----------------- 237 (304)
T ss_dssp HHTTCSEECCBHHHHHHHHSCCCCSHHHHHHHHHHHHHT-TCCEEEEECGGGCEEEECSSCEE-----------------
T ss_pred HHHhCCEEecCHHHHHHHhCCCCCChhHHHHHHHHHHHc-CCCEEEEEeCCCceEEEECCeeE-----------------
Confidence 89999999999999999988642 234455555553 89999999999999998755432
Q ss_pred hhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhC-CChhhHHHHHHHH
Q 046789 232 QRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCAN-MSPEKMLPFAAQV 310 (336)
Q Consensus 232 ~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g-~~l~~al~~a~~~ 310 (336)
++| + ++++++|||||||+|.|||+++|++| +++++|+++|+++
T Consensus 238 -------~~~--------------------------~---~~v~~vdttGAGDaf~a~~~~~l~~g~~~~~~a~~~A~~~ 281 (304)
T 3ry7_A 238 -------HIE--------------------------A---YKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKA 281 (304)
T ss_dssp -------EEC--------------------------C---SSCCSSCCSSHHHHHHHHHHHHCCTTCTTHHHHHHHHHHH
T ss_pred -------Eec--------------------------C---CCcccCCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 444 4 56789999999999999999999999 9999999999999
Q ss_pred HHhhccccCCccCCCCCCCccc
Q 046789 311 AAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 311 Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
|+.+|++.|+.+++|+++|+++
T Consensus 282 aa~~~~~~G~~~~~p~~~ev~~ 303 (304)
T 3ry7_A 282 SSLTVQKHGAQASIPLLEEVNQ 303 (304)
T ss_dssp HHTTSCCCCTGGGCCCHHHHHT
T ss_pred HHHHhCCCCccccCCCHHHHhh
Confidence 9999999999989999999864
No 2
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=1.8e-41 Score=317.06 Aligned_cols=268 Identities=23% Similarity=0.286 Sum_probs=226.0
Q ss_pred CCCCCCCCCce-----EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 4 DPLPPLPENRI-----VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 4 ~~~~p~~~~~~-----~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
++.+|.+++.+ ...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++.+.++.+|+.+++
T Consensus 46 ~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~T~~~~v 125 (343)
T 2rbc_A 46 VADMPKGEGKVLPYEVLQIAEGMASSAAYAVHRMGGRASLWGAVGDDETGTRILRDLSESGIDTSGMTVAPGARSALSTI 125 (343)
T ss_dssp CSSCCCSSSCCCCSEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHHHHHHHHTTEECTTCEEETTCCCEEEEE
T ss_pred cCCCCCCCCeEeeeeeEEcCCcHHHHHHHHHHHcCCceEEEEEeCCCHHHHHHHHHHHHcCCceeeEEEcCCCCCceEEE
Confidence 46667777643 4789999999999999999999999999999999999999999999999998877778999999
Q ss_pred EEcCCCCeeEEEecCCCC-CCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCcchHhHHH-h
Q 046789 79 IVDNQMKTRTCIHTPGDP-PMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTERQRERIDE-F 156 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~-~ 156 (336)
+++.+|. |+++..++.+ .++++++.. +.++.++++|+++..|+.+..+++.+++.++++++|+....+.+.+ +
T Consensus 126 ~~~~~g~-r~~~~~~~~~~~~~~~~l~~----~~l~~~~~v~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~l 200 (343)
T 2rbc_A 126 IIDNRGE-RLIVPFYDHRLHEKKRACTP----EDIALFDAVLVDVRWPELALDVLTVARALGKPAILDGDVAPVETLEGL 200 (343)
T ss_dssp EECTTSC-EEEEEECCGGGGSSCCCCCH----HHHTTCSEEEECSSSHHHHHHHHHHHHHTTCCEEEEECSCCHHHHHHH
T ss_pred EECCCCC-EEEEEcCCCcccCChhHhcH----hhhCCCCEEEEcCCCHHHHHHHHHHHHHCCCEEEEECCccccccHHHH
Confidence 9987654 4445445433 566666653 4578999999999999888899999999999999999766667777 8
Q ss_pred hhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCC-cEEEEeecCCceEEEeec--cCCCCchhhhhhhHHHHHHhhh
Q 046789 157 LKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNL-RFAIVTLGEDGCIMLERS--VNESPELEEIDVDSLLEQLKQR 233 (336)
Q Consensus 157 l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~-~~vvvt~G~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 233 (336)
++++|++++|++|+..+++..+..+ +++.+... ++ +.||+|+|++|+++++.+ ...
T Consensus 201 l~~~dil~~N~~Ea~~l~g~~~~~~-~~~~l~~~-g~~~~VvvT~G~~G~~~~~~~~~~~~------------------- 259 (343)
T 2rbc_A 201 APAATHIVFSEPAATRLTGLETVKD-MLPVLHAR-YPQTFIAVTAGPAGCWWTEADDPTVH------------------- 259 (343)
T ss_dssp GGGCSEEEEEHHHHHHHHCCSSHHH-HHHHHHHH-STTSEEEEECGGGCEEEECTTCCCEE-------------------
T ss_pred HhcCCEEEeCHHHHHHHcCCCCHHH-HHHHHHHh-CCCceEEEEECCcceEEEeCCCceeE-------------------
Confidence 9999999999999999998765444 44444443 77 999999999999987654 221
Q ss_pred cCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHh
Q 046789 234 KDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAA 313 (336)
Q Consensus 234 ~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~ 313 (336)
++| + ++++++|||||||+|.|||+++|++|+++++|+++|+++|+.
T Consensus 260 -----~~~--------------------------~---~~v~vvDttGAGDaF~ag~~~~l~~g~~~~~a~~~A~~~aa~ 305 (343)
T 2rbc_A 260 -----FQT--------------------------T---MQVEAVDTLAAGDIFHGTFALAMAEGMQSRAAVRLSSVAAAL 305 (343)
T ss_dssp -----EEC--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -----Eec--------------------------C---CCCccccCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 333 4 567899999999999999999999999999999999999999
Q ss_pred hccccCCccCCCCCCCcc
Q 046789 314 GCRALGARTSLPHRTDPR 331 (336)
Q Consensus 314 ~~~~~g~~~~~p~~~e~~ 331 (336)
+|++.|+.+++|+++|++
T Consensus 306 ~v~~~G~~~~~p~~~ev~ 323 (343)
T 2rbc_A 306 KCTVFGGRIGAPTREETE 323 (343)
T ss_dssp HHTSSSGGGGCCCHHHHH
T ss_pred HhCCCCCccCCCCHHHHH
Confidence 999999987789998875
No 3
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1
Probab=100.00 E-value=5.4e-41 Score=312.40 Aligned_cols=275 Identities=25% Similarity=0.396 Sum_probs=225.6
Q ss_pred CCCCCCCCCce-----EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 4 DPLPPLPENRI-----VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 4 ~~~~p~~~~~~-----~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
++.+|.+++.+ ...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.+++
T Consensus 41 ~~~~p~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~l~~~L~~~Gv~~~~v~~~~~~~T~~~~v 120 (331)
T 2fv7_A 41 TSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASI 120 (331)
T ss_dssp CSSCCCTTCCCCCSEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHTTTEECTTEEEESSSCCEEEEE
T ss_pred cCCCCCCCceEecCceEECcCCHHHHHHHHHHHCCCCeEEEEEECCChhHHHHHHHHHHcCCcceeeEecCCCCCceEEE
Confidence 56777777654 3789999999999999999999999999999999999999999999999998877788999999
Q ss_pred EEcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH-HHHHHHHHHHHhCCCcEEEeCCcc-hHhHHH
Q 046789 79 IVDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLP-DTAIIVAQEAARKNIPILIDTERQ-RERIDE 155 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~a~~~~~~v~~d~~~~-~~~~~~ 155 (336)
+++.+|.+++.. ..+. ..+++++++. ..+.++.++++++++..+ +.+..+++.+++.++++++|+... ......
T Consensus 121 ~~~~~g~~~~~~-~~ga~~~l~~~~~~~--~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~ 197 (331)
T 2fv7_A 121 IVNNEGQNIIVI-VAGANLLLNTEDLRA--AANVISRAKVMVCQLEITPATSLEALTMARRSGVKTLFNPAPAIADLDPQ 197 (331)
T ss_dssp EECTTSCEEEEE-ECGGGGGCCHHHHHH--THHHHHHCSEEEECSSSCHHHHHHHHHHHHHTTCEEEECCCSCCTTCCTH
T ss_pred EECCCCCeEEEe-cCCccccCCHHHHHH--HHHhhccCCEEEEecCCCHHHHHHHHHHHHHcCCEEEEeCCcccccchHH
Confidence 998766554444 4443 3566666543 234578899999988765 566788999999999999999643 233457
Q ss_pred hhhcCcEEecCcccchhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeec--cCCCCchhhhhhhHHHHH
Q 046789 156 FLKLASYAVCSAKFPQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERS--VNESPELEEIDVDSLLEQ 229 (336)
Q Consensus 156 ~l~~~dil~~n~~e~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~--~~~~~~~~~~~~~~~~~~ 229 (336)
+++++|++++|++|+..+++... ..+++++.+... +++.||+|+|++|++++..+ ...
T Consensus 198 ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~-g~~~VvvT~G~~G~~~~~~~~~~~~--------------- 261 (331)
T 2fv7_A 198 FYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKR-GCQVVIITLGAEGCVVLSQTEPEPK--------------- 261 (331)
T ss_dssp HHHTCSEEEEEHHHHHHHHSSCCCSHHHHHHHHHHHHTT-TCSEEEEECGGGCEEEEESSCCSCE---------------
T ss_pred HHhcCCEEEeCHHHHHHHhCCCCCChhHHHHHHHHHHHc-CCCEEEEEECCCceEEEECCCCcee---------------
Confidence 88999999999999999987532 234455555554 89999999999999988655 222
Q ss_pred HhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhC--CChhhHHHHH
Q 046789 230 LKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCAN--MSPEKMLPFA 307 (336)
Q Consensus 230 ~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g--~~l~~al~~a 307 (336)
++| + ++++++|||||||+|.|||+++|++| +++++|+++|
T Consensus 262 ---------~~~--------------------------~---~~v~vvdttGAGDaf~a~~~~~l~~g~~~~~~~a~~~A 303 (331)
T 2fv7_A 262 ---------HIP--------------------------T---EKVKAVDTTGAGDSFVGALAFYLAYYPNLSLEDMLNRS 303 (331)
T ss_dssp ---------EEC--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred ---------Eec--------------------------C---CCCccCCCCCchHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 333 4 56789999999999999999999999 9999999999
Q ss_pred HHHHHhhccccCCccCCCCCCCcccccC
Q 046789 308 AQVAAAGCRALGARTSLPHRTDPRLASF 335 (336)
Q Consensus 308 ~~~Aa~~~~~~g~~~~~p~~~e~~~~~~ 335 (336)
+++|+.+|++.|+.+.+|+++|++++.|
T Consensus 304 ~~~aa~~v~~~G~~~~~p~~~ev~~~~~ 331 (331)
T 2fv7_A 304 NFIAAVSVQAAGTQSSYPYKKDLPLTLF 331 (331)
T ss_dssp HHHHHHHHTSSSGGGGCCCGGGSCGGGC
T ss_pred HHHHHHHhCCCCCccCCCCHHHHhhhhC
Confidence 9999999999999888999999998654
No 4
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A
Probab=100.00 E-value=4.3e-40 Score=306.11 Aligned_cols=259 Identities=19% Similarity=0.176 Sum_probs=216.2
Q ss_pred EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCC
Q 046789 15 VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPG 94 (336)
Q Consensus 15 ~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~ 94 (336)
...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.+++.++.+|.+.+.++..+
T Consensus 33 ~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~~T~~~~i~~~~~g~~~~~~~~~~ 112 (330)
T 3iq0_A 33 GPYPSGAPAIFIDQVTRLGVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDRDFIFNIKN 112 (330)
T ss_dssp EEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHHTTCBCTTEEEETTSCCEEEEEEECC---CEEEEECTT
T ss_pred CcCCCCHHHHHHHHHHHCCCcEEEEEEeCCChHHHHHHHHHHHcCCCeeeEEEcCCCCceEEEEEECCCCCeeEEEeccC
Confidence 36789999999999999999999999999999999999999999999999988778889999998887665545555543
Q ss_pred -C-CCCCCcccchhhHhhhccCCcEEEEcCCcH------HHHHHHHHHHHhCCCcEEEeCCc---------chHhHHHhh
Q 046789 95 -D-PPMIPDDLSESTIFSALDGARILYLDGRLP------DTAIIVAQEAARKNIPILIDTER---------QRERIDEFL 157 (336)
Q Consensus 95 -~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~------~~~~~~~~~a~~~~~~v~~d~~~---------~~~~~~~~l 157 (336)
. ..++++++.. ..++.++++|++++.+ +.+.++++.++++++++++|+.. ..+.+..++
T Consensus 113 ~a~~~~~~~~~~~----~~~~~~~~v~~sg~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~l 188 (330)
T 3iq0_A 113 AACGKLSAQHVDE----NILKDCTHFHIMGSSLFSFHMVDAVKKAVTIVKANGGVISFDPNIRKEMLDIPEMRDALHFVL 188 (330)
T ss_dssp SGGGGCCGGGCCG----GGGTTEEEEEEEGGGCSSHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGGGSHHHHHHHHHHH
T ss_pred ChhhhCCHhhCCH----hHhccCCEEEEechhhcCcchHHHHHHHHHHHHHcCCEEEEcCCCCccccCcHHHHHHHHHHH
Confidence 2 2577777765 4689999999988643 45678899999999999999952 234567788
Q ss_pred hcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCC
Q 046789 158 KLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDR 237 (336)
Q Consensus 158 ~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (336)
+++|++++|++|+..+++..+..+.+ +.+... +++.||+|+|++|+++++.+...
T Consensus 189 ~~~dil~~N~~E~~~l~g~~~~~~~~-~~l~~~-g~~~vvvT~G~~G~~~~~~~~~~----------------------- 243 (330)
T 3iq0_A 189 ELTDIYMPSEGEVLLLSPHSTPERAI-AGFLEE-GVKEVIVKRGNQGASYYSANEQF----------------------- 243 (330)
T ss_dssp HTCSEECCBGGGTTTTCSCSSHHHHH-HHHHHH-TCSEEEEECGGGCEEEECSSCEE-----------------------
T ss_pred hhCCEEecCHHHHHHHhCCCCHHHHH-HHHHHc-CCCEEEEEeCCCceEEEECCceE-----------------------
Confidence 99999999999999999876554444 444443 89999999999999998765432
Q ss_pred CCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccc
Q 046789 238 AAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRA 317 (336)
Q Consensus 238 ~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~ 317 (336)
++| + ++++++|||||||+|.|||+++|++|+++++|+++|+++|+.+|++
T Consensus 244 -~~~--------------------------~---~~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~ 293 (330)
T 3iq0_A 244 -HVE--------------------------S---YPVEEVDPTGAGDCFGGAWIACRQLGFDAHRALQYANACGALAVTR 293 (330)
T ss_dssp -EEC--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTS
T ss_pred -Eec--------------------------C---CCCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC
Confidence 444 4 5678999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCCCCccc
Q 046789 318 LGARTSLPHRTDPRL 332 (336)
Q Consensus 318 ~g~~~~~p~~~e~~~ 332 (336)
.|+..++|+++|+++
T Consensus 294 ~G~~~~~p~~~ev~~ 308 (330)
T 3iq0_A 294 RGPMEGTSRLMEIET 308 (330)
T ss_dssp CSSSTTCCCHHHHHH
T ss_pred cCCCCCCCCHHHHHH
Confidence 999888999999864
No 5
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Probab=100.00 E-value=7.3e-41 Score=308.38 Aligned_cols=272 Identities=23% Similarity=0.308 Sum_probs=222.9
Q ss_pred CCCCCCCCCce-----EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 4 DPLPPLPENRI-----VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 4 ~~~~p~~~~~~-----~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
++.+|.+++.. ...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.+++
T Consensus 21 ~~~~p~~g~~~~~~~~~~~~GG~~~N~A~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~~gv~~~~v~~~~~~~T~~~~~ 100 (309)
T 1rkd_A 21 LQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALI 100 (309)
T ss_dssp CSSCCCTTCCCCCCCEEEEEECHHHHHHHHHHHHTCEEEEEEEEESSTTHHHHHHHHHTTTEECTTEEEETTCCCEEEEE
T ss_pred cCCCCCCCCeeecCceeecCCCHHHHHHHHHHhCCCceEEEEEECCCHHHHHHHHHHHHcCCCccceEecCCCCCceEEE
Confidence 56777777654 3789999999999999999999999999999999999999999999999998777788999999
Q ss_pred EEcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH-HHHHHHHHHHHhCCCcEEEeCCcchHhHHHh
Q 046789 79 IVDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLP-DTAIIVAQEAARKNIPILIDTERQRERIDEF 156 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~ 156 (336)
+++.+|.+++.. ..+. ..+++++++. ..+.++.++++|+++..+ +.+..+++.++++++++++|+.........+
T Consensus 101 ~~~~~g~~~~~~-~~~~~~~l~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~l 177 (309)
T 1rkd_A 101 FVNGEGENVIGI-HAGANAALSPALVEA--QRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPARELPDEL 177 (309)
T ss_dssp EECTTSCEEEEE-ECGGGGGCCHHHHHT--THHHHHHCSEEEECSSSCHHHHHHHHHHHHHTTCEEEECCCSCCCCCHHH
T ss_pred EECCCCCeEEEE-eCCchhcCCHHHHHH--HHHhcccCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEECCccccchHHH
Confidence 998766555444 4443 3666666543 234578899999988765 5667889999999999999996433334578
Q ss_pred hhcCcEEecCcccchhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhh
Q 046789 157 LKLASYAVCSAKFPQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQ 232 (336)
Q Consensus 157 l~~~dil~~n~~e~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (336)
++++|++++|++|+..+++... ..+.+++.+... +++.||+|+|++|+++++.+...
T Consensus 178 l~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~-g~~~vvvt~G~~G~~~~~~~~~~------------------ 238 (309)
T 1rkd_A 178 LALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEK-GIRTVLITLGSRGVWASVNGEGQ------------------ 238 (309)
T ss_dssp HTTCSEECCCHHHHHHHHSCCCSSHHHHHHHHHHHHHT-TCSEEEEECGGGCEEEEETTEEE------------------
T ss_pred HhhCCEEEcCHHHHHHHhCCCCCCHHHHHHHHHHHHHh-CCCEEEEEECCCcEEEEeCCceE------------------
Confidence 8999999999999999988642 233445555553 89999999999999887654332
Q ss_pred hcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 046789 233 RKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAA 312 (336)
Q Consensus 233 ~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa 312 (336)
++| + ++++++|||||||+|.|||+++|++|+++++|+++|+++|+
T Consensus 239 ------~~~--------------------------~---~~v~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa 283 (309)
T 1rkd_A 239 ------RVP--------------------------G---FRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAA 283 (309)
T ss_dssp ------EEC--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ------EcC--------------------------C---CCCCcCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333 4 56678999999999999999999999999999999999999
Q ss_pred hhccccCCccCCCCCCCccc
Q 046789 313 AGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 313 ~~~~~~g~~~~~p~~~e~~~ 332 (336)
.+|++.|+...+|+++|++.
T Consensus 284 ~~~~~~G~~~~~p~~~ev~~ 303 (309)
T 1rkd_A 284 IAVTRKGAQPSVPWREEIDA 303 (309)
T ss_dssp HHHTSSSSGGGCCCHHHHHH
T ss_pred HHcCCCCccCCCCCHHHHHH
Confidence 99999999888899998763
No 6
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Probab=100.00 E-value=2.9e-41 Score=309.90 Aligned_cols=258 Identities=20% Similarity=0.279 Sum_probs=221.3
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.++.+|.+++.++ ..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++. .++.+|+.++
T Consensus 18 ~~~~~p~~g~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~i~~vG~D~~g~~i~~~l~~~gv~~~~v~-~~~~~T~~~~ 96 (299)
T 3ikh_A 18 SIPDIPKKGASIHGVKVSQDIGGKGANQAIILSRCGIETRLIAATGNDSNGAWIRQQIKNEPLMLLPDG-HFNQHSDTSI 96 (299)
T ss_dssp ECSSCCCTTCEEECEEEEEEEECHHHHHHHHHHHTTCCEEEECCCCSSHHHHHHHHHGGGSSCEEESSS-CCSSCCEEEE
T ss_pred ecCCCCCCCCeEEeeeeeeccCCHHHHHHHHHHHCCCCeEEEEEECCCHHHHHHHHHHHHcCCceeeeE-ecCCCCcEEE
Confidence 3678888887654 899999999999999999999999999999999999999999999999985 4667899999
Q ss_pred EEEcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH-HHHHHHHHHHHhCCCcEEEeCCcchHhHHH
Q 046789 78 VIVDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLP-DTAIIVAQEAARKNIPILIDTERQRERIDE 155 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~ 155 (336)
++++.+|.+++ +..++. ..+++++++. ..+.++.++++++++..+ +.+..+++.++++++++++|+....+.+..
T Consensus 97 ~~~~~~g~~~~-~~~~~a~~~l~~~~~~~--~~~~~~~~~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~ 173 (299)
T 3ikh_A 97 ILNSADGDNAI-ITTTAAADTFSLDEMIP--HMADAVAGDILLQQGNFSLDKTRALFQYARSRGMTTVFNPSPVNPDFCH 173 (299)
T ss_dssp EECSSSCSCEE-EEECHHHHHCCHHHHGG--GGTTCCTTCEEEECSCSCHHHHHHHHHHHHHTTCEEEECCCSCCGGGGG
T ss_pred EEEcCCCCeEE-EEeCCccccCCHHHHHH--HHhhhccCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEccccchhhHHH
Confidence 99987665544 444443 2677766654 345689999999998875 677789999999999999999766567778
Q ss_pred hhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcC
Q 046789 156 FLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKD 235 (336)
Q Consensus 156 ~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (336)
+++++|++++|++|+..+++ .+++.+|+|+|++|+++++++...
T Consensus 174 ll~~~dil~~N~~E~~~l~g---------------~g~~~vvvt~G~~G~~~~~~~~~~--------------------- 217 (299)
T 3ikh_A 174 LWPLIDIAVVNESEAELLQP---------------YGVKTLVITQGAAGAWLVQEGQRQ--------------------- 217 (299)
T ss_dssp CGGGCSEEEEEHHHHHHHCC---------------CSCSEEEEECGGGCEEEECSSCEE---------------------
T ss_pred HHhhCCEEEecHHHHHHHhc---------------CCCCEEEEEECCCceEEEeCCceE---------------------
Confidence 89999999999999998876 388999999999999988655432
Q ss_pred CCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHH-HHHHHHHhCCChhh-HHHHHHHHHHh
Q 046789 236 DRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIG-AVLYALCANMSPEK-MLPFAAQVAAA 313 (336)
Q Consensus 236 ~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~a-g~i~~l~~g~~l~~-al~~a~~~Aa~ 313 (336)
++| + ++++++|||||||+|.| ||+++|++|+++++ |+++|+++|+.
T Consensus 218 ---~~~--------------------------~---~~v~vvDttGAGDaf~a~~~~~~l~~g~~~~~~a~~~a~~~aa~ 265 (299)
T 3ikh_A 218 ---FCP--------------------------A---VPAEALDTTGAGDTFLAVMLASALLRGVAPDALALAHASRAAAI 265 (299)
T ss_dssp ---EEC--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ---EeC--------------------------C---CCCccCCCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 444 4 56789999999999999 99999999999999 99999999999
Q ss_pred hccccCCccCCCCCCCccc
Q 046789 314 GCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 314 ~~~~~g~~~~~p~~~e~~~ 332 (336)
+|++.|+.+++|+++|+++
T Consensus 266 ~v~~~G~~~~~p~~~ev~~ 284 (299)
T 3ikh_A 266 TVSRRGTLSAFPGSRELAA 284 (299)
T ss_dssp HHHSSSSTTTSCCHHHHHH
T ss_pred HhCCCcccccCCCHHHHHH
Confidence 9999999988999999864
No 7
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*
Probab=100.00 E-value=7.8e-41 Score=312.09 Aligned_cols=269 Identities=20% Similarity=0.245 Sum_probs=210.6
Q ss_pred CCCCCCCceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCC
Q 046789 6 LPPLPENRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMK 85 (336)
Q Consensus 6 ~~p~~~~~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~ 85 (336)
..|......+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++.+.++.+|+.+++.++.+|.
T Consensus 23 ~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~l~~~l~~~gV~~~~v~~~~~~~T~~~~v~~~~~g~ 102 (338)
T 3ljs_A 23 VKKGMPRAFLQCAGGAPANVAVAVARLGGAVQFVGMLGSDMFGDFLFDSFAEAGVVTDGIVRTSTAKTALAFVALDAHGE 102 (338)
T ss_dssp SSTTSCCCEEEEEECHHHHHHHHHHHHTCCEEEESEEESSHHHHHHHHHHHHHTCBCTTCEEESSSCCCEEEEECCSTTC
T ss_pred CCccchhceeecCCChHHHHHHHHHhCCCCEEEEeeccCCHHHHHHHHHHHHcCCCceeEEEcCCCCceEEEEEECCCCC
Confidence 34444456678999999999999999999999999999999999999999999999999988778889999999987766
Q ss_pred eeEEEec-CCCC-CCCCcccchhhHhhhccCCcEEEEcCCc------HHHHHHHHHHHHhCCCcEEEeCC----------
Q 046789 86 TRTCIHT-PGDP-PMIPDDLSESTIFSALDGARILYLDGRL------PDTAIIVAQEAARKNIPILIDTE---------- 147 (336)
Q Consensus 86 ~~~~~~~-~~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~------~~~~~~~~~~a~~~~~~v~~d~~---------- 147 (336)
+.+.++. .+++ .+++++++. ..++.++++|+++.. .+.+.++++.++++++++++|+.
T Consensus 103 r~~~~~~~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~ 178 (338)
T 3ljs_A 103 RSFSFYRPPAADLLFRVEHFQD----ASFSDALIFHACSNSMTDADIAEVTFEGMRRAQAAGAIVSFDLNFRPMLWPNGE 178 (338)
T ss_dssp CEEEEECSSCGGGGCCGGGCCH----HHHHTEEEEEEEGGGGSSHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGSCTTC
T ss_pred eEEEEeCCCChhHhCCHhhcCH----hHhcCCCEEEECChHhcCchHHHHHHHHHHHHHHcCCEEEEECCCChhhcCCHH
Confidence 6555554 3433 678888875 467889999998753 25677899999999999999993
Q ss_pred cchHhHHHhhhcCcEEecCcccchhhcCCCChHH-HHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHH
Q 046789 148 RQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPS-ALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSL 226 (336)
Q Consensus 148 ~~~~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~-~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~ 226 (336)
...+.+..+++++|++++|++|+..+++..+..+ .+++.+.. .+++.||+|+|++|++++.++...
T Consensus 179 ~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~l~~-~g~~~vvvT~G~~G~~~~~~~~~~------------ 245 (338)
T 3ljs_A 179 NPASRLWKGLSLADVVKLSSEELDYLANTLAADANAVIQQLWQ-GRAQLLLVTDAAGPVHWYTRTAGG------------ 245 (338)
T ss_dssp CTHHHHHHHHHTCSEEEEEHHHHHHHHHHHTSCHHHHHHHHTT-TTCCEEEEEETTEEEEEEESSCEE------------
T ss_pred HHHHHHHHHHhhCCEEEecHHHHHHHhCCCChhHHHHHHHHHh-cCCCEEEEeeCCCceEEEECCceE------------
Confidence 2356778899999999999999998887543322 24555554 489999999999999998765432
Q ss_pred HHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhC---------
Q 046789 227 LEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCAN--------- 297 (336)
Q Consensus 227 ~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g--------- 297 (336)
++| + ++++++|||||||+|.|||+++|++|
T Consensus 246 ------------~~~--------------------------~---~~v~vvDttGAGDaF~a~~~~~l~~g~~~~~~~~~ 284 (338)
T 3ljs_A 246 ------------EVP--------------------------T---FRVQVQDSNAAGDAFVGGMLYTFAQQFDDAAALID 284 (338)
T ss_dssp ------------EEC--------------------------C--------------CHHHHHHHHHHHHHHCSSTHHHHH
T ss_pred ------------EeC--------------------------C---CCCccCCCCCccHHHHHHHHHHHHhCCCcccchhc
Confidence 444 4 56789999999999999999999999
Q ss_pred -----CChhhHHHHHHHHHHhhccccCCccCCCCCCCccc
Q 046789 298 -----MSPEKMLPFAAQVAAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 298 -----~~l~~al~~a~~~Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
+++++|+++|+++|+++|++.|+.+++|+++|+++
T Consensus 285 ~~~~~~~l~~al~~A~~~aa~~v~~~Ga~~~~p~~~ev~~ 324 (338)
T 3ljs_A 285 FCHDPESIVSTLRFAAAVGALAVTRQGAFTAMPMLSEVLS 324 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHGGGC----CCCCTTHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Confidence 89999999999999999999999988999999864
No 8
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}
Probab=100.00 E-value=1e-39 Score=304.46 Aligned_cols=261 Identities=22% Similarity=0.292 Sum_probs=207.3
Q ss_pred eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEE-Eec
Q 046789 14 IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTC-IHT 92 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~-~~~ 92 (336)
.+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++.+.++.+|+.+++.++.+|.++.+ ++.
T Consensus 53 ~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~i~~~L~~~GV~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~ 132 (336)
T 4du5_A 53 FHKRTAGAETNVAIGLARLGLKVGWASRLGTDSMGRYLLAAMAAEGIDCSHVVCDATQKTGFQFKGKVTDGSDPPVEYHR 132 (336)
T ss_dssp EEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHHHHHHHHTTTCEEEEEEECTTSCCCEEEECCCSCC--CCEEEEC
T ss_pred eeecCCCHHHHHHHHHHhCCCcEEEEEEeCCCHHHHHHHHHHHHcCCCcceEEEcCCCCcEEEEEEEcCCCCcceEEEEC
Confidence 4589999999999999999999999999999999999999999999999999887778899999988877745544 333
Q ss_pred -CCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH-------HHHHHHHHHHHhCCCcEEEeCCc----------chHhH
Q 046789 93 -PGD-PPMIPDDLSESTIFSALDGARILYLDGRLP-------DTAIIVAQEAARKNIPILIDTER----------QRERI 153 (336)
Q Consensus 93 -~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-------~~~~~~~~~a~~~~~~v~~d~~~----------~~~~~ 153 (336)
.++ ..++++++.. +.++.++++|++++.+ +.+.++++.++++++++++|+.. ..+.+
T Consensus 133 ~~~a~~~l~~~~~~~----~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~ 208 (336)
T 4du5_A 133 KGSAASHMGVADIDE----AWLLSARHLHATGVFPAISATTLPAARKTMDLMRAAGRSVSFDPNLRPTLWATPELMRDAI 208 (336)
T ss_dssp TTCTGGGCCGGGCCH----HHHTTEEEEEEESSGGGSCTTHHHHHHHHHHHHHHTTCEEEEECCCCGGGSSSHHHHHHHH
T ss_pred CCChhHhCChhhCCH----hHhccCCEEEEcCchhhCChHHHHHHHHHHHHHHHCCCEEEEeCcCCchhcCChHHHHHHH
Confidence 333 3778887775 5678999999988754 45668899999999999999951 13456
Q ss_pred HHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhh
Q 046789 154 DEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQR 233 (336)
Q Consensus 154 ~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (336)
..+++++|++++|++|+..+++..+.. .+++.+... +++.||+|+|++|++++..++..
T Consensus 209 ~~ll~~~dil~pN~~Ea~~l~g~~~~~-~~~~~l~~~-g~~~vvvt~G~~G~~~~~~~~~~------------------- 267 (336)
T 4du5_A 209 NDLATRADWVLPGMEEGRFLTGETTPE-GVARFYRQL-GAKLVVVKLGAEGAYFDGEAGSG------------------- 267 (336)
T ss_dssp HHHHTTCSEECCBHHHHHHHHCCCSHH-HHHHHHHHT-TCSEEEEECGGGCEEEEETTEEE-------------------
T ss_pred HHHHHhCCEEECCHHHHHHHhCCCCHH-HHHHHHHhc-CCCEEEEEecCCceEEEECCeEE-------------------
Confidence 778899999999999999999876544 445555553 89999999999999998654432
Q ss_pred cCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCC-ccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 046789 234 KDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSE-LVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAA 312 (336)
Q Consensus 234 ~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa 312 (336)
++| + ++++ ++||+||||+|.|||+++|++|+++++|+++|+++|+
T Consensus 268 -----~~~--------------------------~---~~v~~vvdttGAGDaf~a~~~~~l~~g~~l~~a~~~A~~~aa 313 (336)
T 4du5_A 268 -----RVA--------------------------G---FPVAEVVDTVGAGDGFAVGVISALLDGLGVPEAVKRGAWIGA 313 (336)
T ss_dssp -----EEC--------------------------C---CCC-------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -----EeC--------------------------C---ccCCCCCCCccchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344 4 5565 8999999999999999999999999999999999999
Q ss_pred hhccccCCccCCCCCCCcccc
Q 046789 313 AGCRALGARTSLPHRTDPRLA 333 (336)
Q Consensus 313 ~~~~~~g~~~~~p~~~e~~~~ 333 (336)
.+|++.|+.+++|+++|+++.
T Consensus 314 ~~v~~~G~~~~~p~~~ev~~~ 334 (336)
T 4du5_A 314 RAVQVLGDSEGLPTRAELNAA 334 (336)
T ss_dssp HHHC------CCCCHHHHHCC
T ss_pred HHhccCCCccCCCCHHHHHhc
Confidence 999999999889999998764
No 9
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}
Probab=100.00 E-value=1.3e-40 Score=309.34 Aligned_cols=272 Identities=18% Similarity=0.208 Sum_probs=222.3
Q ss_pred CCCCCCCCCce----EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEE
Q 046789 4 DPLPPLPENRI----VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVI 79 (336)
Q Consensus 4 ~~~~p~~~~~~----~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~ 79 (336)
++..|.+++.. +..+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++++
T Consensus 23 ~~~~~~~g~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~L~~~gv~~~~v~~~~~~~T~~~~~~ 102 (328)
T 3kzh_A 23 SKASYRPYNSTPGHVKISFGGVCRNIAENMARVGVNTNFMSILGNDEHGKSIVEHSKKIGYHMDDSMVIEGGSTPTYLAI 102 (328)
T ss_dssp ESSCCCTTSEEEEEEEEEEECHHHHHHHHHHHTTCCEEEECEECSSHHHHHHHHHHHHHTEECTTCEECTTCCCCEEEEE
T ss_pred cCCCCCCCCCceEEEEEccCcHHHHHHHHHHHcCCCcEEEEEecCcHHHHHHHHHHHHcCCCccceEEeCCCCCeeEEEE
Confidence 45667777664 38999999999999999999999999999999999999999999999999877677789999999
Q ss_pred EcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCcc--hHhHHHh
Q 046789 80 VDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTERQ--RERIDEF 156 (336)
Q Consensus 80 ~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~--~~~~~~~ 156 (336)
++.+|.+.+.+..++. ..++++++.. ..+.+..++++++++..|+.+..+++ +++.++++++|+... .+.+..+
T Consensus 103 ~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~-a~~~~~~v~~D~~~~~~~~~~~~~ 179 (328)
T 3kzh_A 103 LDENGEMVSAIADMKSIGAMNTDFIDS--KREIFENAEYTVLDSDNPEIMEYLLK-NFKDKTNFILDPVSAEKASWVKHL 179 (328)
T ss_dssp ECTTSCEEEEEEECGGGGGCCHHHHHH--THHHHHTCSEEEEESSCHHHHHHHHH-HHTTTSEEEEECCSHHHHHTSTTT
T ss_pred EcCCCCEEEEEEchhhhhhCCHHHHHH--HHHhhccCCEEEEeCCcHHHHHHHHH-HhhcCCcEEEEeCCHHHHHHHHHH
Confidence 9987766655555543 2445444432 34668899999999999955555666 888999999999632 2345677
Q ss_pred hhcCcEEecCcccchhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhh
Q 046789 157 LKLASYAVCSAKFPQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQ 232 (336)
Q Consensus 157 l~~~dil~~n~~e~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (336)
++++|++++|++|+..+++.+. ..+.+++.+... +++.+|+|+|++|++++..+...
T Consensus 180 l~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~-g~~~vvvt~G~~G~~~~~~~~~~------------------ 240 (328)
T 3kzh_A 180 IKDFHTIKPNRHEAEILAGFPITDTDDLIKASNYFLGL-GIKKVFISLDADGIFYNDGVSCG------------------ 240 (328)
T ss_dssp GGGCSEECCBHHHHHHHHTSCCCSHHHHHHHHHHHHHH-TCCEEEEECGGGCEEEECSSCEE------------------
T ss_pred hcCCcEEeCCHHHHHHHHCCCCCCHHHHHHHHHHHHHh-CCCEEEEEeCCCCEEEEeCCceE------------------
Confidence 8999999999999999988542 233445555543 89999999999999998755432
Q ss_pred hcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 046789 233 RKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAA 312 (336)
Q Consensus 233 ~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa 312 (336)
++| + ++++++|||||||+|.|||+++|++|+++++|+++|+++|+
T Consensus 241 ------~~~--------------------------~---~~v~vvdttGAGDaf~ag~~~~l~~g~~~~~a~~~A~a~aa 285 (328)
T 3kzh_A 241 ------KIK--------------------------A---TEVDVKNVTGAGDSFVAGLGYGYMNKMPIEDIVKFAMTMSN 285 (328)
T ss_dssp ------EEE--------------------------E---SSCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ------Eec--------------------------C---CCcccCCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444 4 56789999999999999999999999999999999999999
Q ss_pred hhccccCCccCCCCCCCccc
Q 046789 313 AGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 313 ~~~~~~g~~~~~p~~~e~~~ 332 (336)
.+|++.|+.+..|+++++++
T Consensus 286 ~~v~~~G~~~~~~~~~~v~~ 305 (328)
T 3kzh_A 286 ITISHEETIHPDMALDTVLA 305 (328)
T ss_dssp HHHTSSSSSCTTCSHHHHHH
T ss_pred HHhcCCCCCCCcCCHHHHHH
Confidence 99999999988999998763
No 10
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A
Probab=100.00 E-value=3.6e-40 Score=302.96 Aligned_cols=263 Identities=19% Similarity=0.218 Sum_probs=215.4
Q ss_pred CCCCCCCCCc-----eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 4 DPLPPLPENR-----IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 4 ~~~~p~~~~~-----~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
++.+|.+++. ....+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.+++
T Consensus 22 ~~~~p~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~gv~~~~~~~~~~~~T~~~~~ 101 (302)
T 2c4e_A 22 VEKFPEPNTSIQIPSARKYYGGAAANTAVGIKKLGVNSELLSCVGYDFKNSGYERYLKNLDINISKLYYSEEEETPKAWI 101 (302)
T ss_dssp CSSCCCTTCCCCCSCEEEEEECHHHHHHHHHHHTTCEEEEECEECTTTTTSHHHHHHHHTTCBCTTCEECSSSCCCEEEE
T ss_pred ccccCCCCceeeecceeecCCCHHHHHHHHHHHCCCceEEEEEEeCCCchHHHHHHHHHcCCcccceEeeCCCCCceEEE
Confidence 5667777764 34789999999999999999999999999999999999999999999999887767778999999
Q ss_pred EEcCCCCeeEEEecCCCCCCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCcc-----hHhH
Q 046789 79 IVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTERQ-----RERI 153 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~-----~~~~ 153 (336)
+++.+|.+++..+......+++++++. ..++++|+++..++.+..+++.+++++ ++++|+... .+.+
T Consensus 102 ~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~a~~~g-~v~~D~~~~~~~~~~~~~ 173 (302)
T 2c4e_A 102 FTDKDNNQITFFLWGAAKHYKELNPPN-------FNTEIVHIATGDPEFNLKCAKKAYGNN-LVSFDPGQDLPQYSKEML 173 (302)
T ss_dssp EECSSCCEECCEECGGGGGGGGCCCCC-------CCEEEEEECSSCHHHHHHHHHHHBTTB-EEEECCGGGGGGCCHHHH
T ss_pred EECCCCCEEEEEeCChhhhCCHhhcCc-------ccCCEEEEeCCCcHHHHHHHHHHHhcC-CEEEeCchhhhhhhHHHH
Confidence 998766554444432222456555542 688999999988888889999999999 999999631 3567
Q ss_pred HHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhh
Q 046789 154 DEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQR 233 (336)
Q Consensus 154 ~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (336)
..+++++|++++|++|+..+++.....+. .+... .+.+|+|+|++|++++..+...
T Consensus 174 ~~~l~~~dil~~N~~E~~~l~g~~~~~~~---~l~~~--~~~vvvt~G~~G~~~~~~~~~~------------------- 229 (302)
T 2c4e_A 174 LEIIEHTNFLFMNKHEFERASNLLNFEID---DYLER--VDALIVTKGSKGSVIYTKDKKI------------------- 229 (302)
T ss_dssp HHHHHTCSEEEEEHHHHHHHHHHHTCCHH---HHHTT--CSEEEEECGGGCEEEECSSCEE-------------------
T ss_pred HHHHhcCCEEEcCHHHHHHHhCCCCccHH---HHHhc--CCEEEEEECCCceEEEeCCcEE-------------------
Confidence 78899999999999999988764322222 34443 7899999999999988654322
Q ss_pred cCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCC-ccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 046789 234 KDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSE-LVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAA 312 (336)
Q Consensus 234 ~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa 312 (336)
++| + ++++ ++|||||||+|.|||+++|++|+++++|+++|+++|+
T Consensus 230 -----~~~--------------------------~---~~v~~~vdt~GAGDaf~a~~~~~l~~g~~~~~a~~~a~~~aa 275 (302)
T 2c4e_A 230 -----EIP--------------------------C---IKAGKVIDPTGAGDSYRAGFLSAYVKGYDLEKCGLIGAATAS 275 (302)
T ss_dssp -----EEC--------------------------C---CCCSCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -----EeC--------------------------C---ccCCcCCcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333 4 5666 8999999999999999999999999999999999999
Q ss_pred hhccccCCccCCCCCCCccc
Q 046789 313 AGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 313 ~~~~~~g~~~~~p~~~e~~~ 332 (336)
.+|++.|+...+|+++|++.
T Consensus 276 ~~~~~~G~~~~~p~~~ev~~ 295 (302)
T 2c4e_A 276 FVVEAKGCQTNLPTWDKVVE 295 (302)
T ss_dssp HHTTSSSSSTTCCCHHHHHH
T ss_pred HHHccccccccCCCHHHHHH
Confidence 99999999888899988753
No 11
>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A*
Probab=100.00 E-value=3.7e-40 Score=311.28 Aligned_cols=272 Identities=17% Similarity=0.217 Sum_probs=223.0
Q ss_pred CCCCCCCc-----eEEecCCchHHHHHHHHHc---CCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 6 LPPLPENR-----IVVQGGGNAGNALTCAARL---GLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 6 ~~p~~~~~-----~~~~~GG~a~n~a~~l~~L---G~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.+|.+++. .+..+||++.|+|.++++| |.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++
T Consensus 63 ~~P~~ge~~~~~~~~~~~GG~~~N~A~~la~L~~~G~~~~~ig~vG~D~~G~~~~~~L~~~GV~~~~~~~~~~~~Tg~~~ 142 (370)
T 3vas_A 63 HMTIYDEIQKKKKLNYIAGGATLNTVKMIQWIIQKPFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKVA 142 (370)
T ss_dssp GTHHHHHHTTSSSCEEEEECHHHHHHHHHHHHHCCTTCEEEEEEECSSHHHHHHHHHHHHTTCEECCEECCTTCCEEEEE
T ss_pred HHHHHHHHhhcCCeEEecCCHHHHHHHHHHHhcCCCCcEEEEEEEcCChhHHHHHHHHHHcCCcccccccCCCCCceEEE
Confidence 35555554 3489999999999999999 999999999999999999999999999999998765677899999
Q ss_pred EEEcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH----HHHHHHHHHHHhCCCcEEEeCCc----
Q 046789 78 VIVDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLP----DTAIIVAQEAARKNIPILIDTER---- 148 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~----~~~~~~~~~a~~~~~~v~~d~~~---- 148 (336)
++++ +| .|+++...++ ..++++++....+.+.++.++++|++++.+ +.+.++++.++++++++++|+..
T Consensus 143 i~v~-~g-~rt~~~~~ga~~~l~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~ld~~~~~~~ 220 (370)
T 3vas_A 143 VLVS-EK-LRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIAGFVINTCYEGMLKIAKHSLENEKLFCFNLSAPFLS 220 (370)
T ss_dssp EEEC-SS-CEEEEEEEEGGGGCCHHHHTSHHHHHHHHHCSEEEEEGGGHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred EEEe-CC-ceeEEEccchhhhCCHHHcCchhhHHHHhhCCEEEEEeeeccCCHHHHHHHHHHHHHcCCEEEEECCcHHHH
Confidence 9998 54 5555554443 478888777544456789999999998763 56678999999999999999952
Q ss_pred --chHhHHHhhhcCcEEecCcccchhhcCCC----ChHHHHHHHHHcC-----C-CCcEEEEeecCCceEEEe--eccCC
Q 046789 149 --QRERIDEFLKLASYAVCSAKFPQVWTEAP----SVPSALVSMLLRL-----P-NLRFAIVTLGEDGCIMLE--RSVNE 214 (336)
Q Consensus 149 --~~~~~~~~l~~~dil~~n~~e~~~l~~~~----~~~~~~~~~l~~~-----~-~~~~vvvt~G~~G~~~~~--~~~~~ 214 (336)
..+.+.++++++|++++|++|+..+++.. ...+++++.+... . +++.||+|+|++|++++. .+...
T Consensus 221 ~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~VvvT~G~~Ga~~~~~~~~~~~ 300 (370)
T 3vas_A 221 QFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIH 300 (370)
T ss_dssp HHCHHHHHHHHTTCSEEEEEHHHHHHHHHHTTCCSSHHHHHHHHHHHSCCTTCCCCCCEEEEEETTEEEEEEETTCSSCE
T ss_pred HHHHHHHHHHHhhCCEEEcCHHHHHHHhcccCCCccCHHHHHHHHHhhcccccccCCCEEEEecCCCceEEEEcCCCeEE
Confidence 23567889999999999999999887642 3455666666654 3 889999999999999987 44332
Q ss_pred CCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHH
Q 046789 215 SPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYAL 294 (336)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l 294 (336)
++| ++++++.+++|||||||+|.|||+++|
T Consensus 301 ------------------------~~~--------------------------~~~v~~~~vvDttGAGDaF~ag~l~~l 330 (370)
T 3vas_A 301 ------------------------QFM--------------------------VEQFKDDQIIDTNGAGDAFAAGFIADY 330 (370)
T ss_dssp ------------------------EEC--------------------------CCCCCTTTCSCCTTHHHHHHHHHHHHH
T ss_pred ------------------------EEe--------------------------cccccCCCcCCCCChHHHHHHHHHHHH
Confidence 444 533334589999999999999999999
Q ss_pred HhCCChhhHHHHHHHHHHhhccccCCccCCCCCCCcc
Q 046789 295 CANMSPEKMLPFAAQVAAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 295 ~~g~~l~~al~~a~~~Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
++|+++++|+++|+++|+.+|++.|+. +|+++++.
T Consensus 331 ~~g~~l~~a~~~A~aaAa~~v~~~G~~--~p~~~~~~ 365 (370)
T 3vas_A 331 IRGKPMITSLHAAVKAAAYIICRSGFS--LGSRDSYS 365 (370)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTSSSSC--CCCGGGGC
T ss_pred HCCCCHHHHHHHHHHHHHHHHcccCCc--CCCCccce
Confidence 999999999999999999999999985 58888875
No 12
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*
Probab=100.00 E-value=1.6e-39 Score=301.62 Aligned_cols=261 Identities=22% Similarity=0.304 Sum_probs=214.6
Q ss_pred CceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEe
Q 046789 12 NRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIH 91 (336)
Q Consensus 12 ~~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~ 91 (336)
+..+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++++++.+| .|++++
T Consensus 36 ~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~i~~~L~~~gV~~~~v~~~~~~~T~~~~~~~~~~g-~r~~~~ 114 (325)
T 3h49_A 36 ERIAMTTGGDAINEATIISRLGHRTALMSRIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDG-ERTFVT 114 (325)
T ss_dssp SCCCCEEESHHHHHHHHHHHTTCEEEEECEEESSHHHHHHHHHHHHHTCBCSSCEEETTSCCCEEEEEECTTS-CEEEEC
T ss_pred heeEEccCcHHHHHHHHHHHCCCCeEEEEEECCChHHHHHHHHHHHcCCceeeEEecCCCCCceEEEEECCCC-ceeEEe
Confidence 4556899999999999999999999999999999999999999999999999998877888999999998765 455555
Q ss_pred cCCC--CCCCCcccchhhHhhhccCCcEEEEcCCc------HHHHHHHHHHHHhCCCcEEEeCC------cchHhHHHhh
Q 046789 92 TPGD--PPMIPDDLSESTIFSALDGARILYLDGRL------PDTAIIVAQEAARKNIPILIDTE------RQRERIDEFL 157 (336)
Q Consensus 92 ~~~~--~~~~~e~~~~~~~~~~l~~~~~i~~~~~~------~~~~~~~~~~a~~~~~~v~~d~~------~~~~~~~~~l 157 (336)
..+. ..++++++.. +.+..++++|++++. .+.+.++++.+++++. +++|+. ...+.+.+++
T Consensus 115 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~-~~~d~~~~~~~~~~~~~~~~~l 189 (325)
T 3h49_A 115 NRNGSLWKLNIDDVDF----ARFSQAKLLSLASIFNSPLLDGKALTEIFTQAKARQM-IICADMIKPRLNETLDDICEAL 189 (325)
T ss_dssp CTTSHHHHCCGGGCCG----GGGGGCSEEEEEEETTSTTSCHHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHHHH
T ss_pred ccCcccccCChhhcCh----hhhccCCEEEEecccCCcccCHHHHHHHHHHHHhcCC-EEEecCCchhhhhHHHHHHHHH
Confidence 4432 2566777664 467889999998753 2567789999999884 555541 2335567889
Q ss_pred hcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCC
Q 046789 158 KLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDR 237 (336)
Q Consensus 158 ~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (336)
+++|++++|++|+..+++..+.. .+++.+.. .+++.||+|+|++|+++++.+...
T Consensus 190 ~~~dil~~N~~E~~~l~g~~~~~-~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~----------------------- 244 (325)
T 3h49_A 190 SYVDYLFPNFAEAKLLTGKETLD-EIADCFLA-CGVKTVVIKTGKDGCFIKRGDMTM----------------------- 244 (325)
T ss_dssp TTCSEEECBHHHHHHHHTCSSHH-HHHHHHHT-TTCSEEEEECTTSCEEEEETTEEE-----------------------
T ss_pred hhCCEEecCHHHHHHHhCCCCHH-HHHHHHHH-cCCCEEEEEeCCCCeEEEECCeEE-----------------------
Confidence 99999999999999999876544 44455554 489999999999999998765432
Q ss_pred CCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccc
Q 046789 238 AAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRA 317 (336)
Q Consensus 238 ~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~ 317 (336)
++| ++ +..+++|||||||+|.|||+++|++|+++++|+++|+++|+++|++
T Consensus 245 -~~~--------------------------~~--~~~~vvDttGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~aa~~v~~ 295 (325)
T 3h49_A 245 -KVP--------------------------AV--AGITAIDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLS 295 (325)
T ss_dssp -EEC--------------------------CC--SSCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTS
T ss_pred -Eec--------------------------Cc--CCCCCcCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcc
Confidence 333 42 2347999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCCCCccc
Q 046789 318 LGARTSLPHRTDPRL 332 (336)
Q Consensus 318 ~g~~~~~p~~~e~~~ 332 (336)
.|+.+++|+++|+++
T Consensus 296 ~G~~~~~p~~~ev~~ 310 (325)
T 3h49_A 296 VGATTGVKNRKLVEQ 310 (325)
T ss_dssp SSSSSSCSSSHHHHT
T ss_pred cCCCCCCCCHHHHHH
Confidence 999989999999864
No 13
>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A*
Probab=100.00 E-value=2.6e-39 Score=305.68 Aligned_cols=268 Identities=19% Similarity=0.233 Sum_probs=216.7
Q ss_pred ceEEecCCchHHHHHHHHHcCCC---ceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEE
Q 046789 13 RIVVQGGGNAGNALTCAARLGLN---PRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTC 89 (336)
Q Consensus 13 ~~~~~~GG~a~n~a~~l~~LG~~---v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~ 89 (336)
.++..+||++.|+|+++++||.+ +.|+|.||+|.+|+.+++.|++.||+++++...++.+|+.++++++ ++ .|++
T Consensus 77 ~~~~~~GGsa~N~a~~la~LG~~~~~~~fiG~VG~D~~G~~l~~~L~~~GV~~~~~~~~~~~~T~~~~v~~~-dg-ert~ 154 (372)
T 3uq6_A 77 KLNYIAGGATLNTVKMIQWIIQKPFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKVAVLVS-EK-LRSM 154 (372)
T ss_dssp SCEEEECCHHHHHHHHHHHHHCSTTSEEEEEEECSSHHHHHHHHHHHHTTCEECCEECCTTCCEEEEEEEEC-SS-CEEE
T ss_pred CeEEeCCcHHHHHHHHHHHcCCCCCcEEEEeeecCCHHHHHHHHHHHHcCCCceeeeecCCCCceEEEEEcC-CC-ceEE
Confidence 34578999999999999999965 8899999999999999999999999999988777777888888776 44 4555
Q ss_pred EecCC-CCCCCCcccchhhHhhhccCCcEEEEcCCcH----HHHHHHHHHHHhCCCcEEEeCC------cchHhHHHhhh
Q 046789 90 IHTPG-DPPMIPDDLSESTIFSALDGARILYLDGRLP----DTAIIVAQEAARKNIPILIDTE------RQRERIDEFLK 158 (336)
Q Consensus 90 ~~~~~-~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~----~~~~~~~~~a~~~~~~v~~d~~------~~~~~~~~~l~ 158 (336)
+...+ +..+++++++.......+..++++|++++.. +...++++.++++++++++|+. ..++.+..+++
T Consensus 155 ~~~~ga~~~l~~~~i~~~~~~~~i~~a~~~~~~g~~~~~~~~~~~~~~~~a~~~g~~v~ldls~~~~~~~~~~~l~~ll~ 234 (372)
T 3uq6_A 155 VTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIAGFVINTCYEGMLKIAKHSLENEKLFCFNLSAPFLSQFNTKEVDEMIS 234 (372)
T ss_dssp EEEEEGGGGCCHHHHTSHHHHHHHHHCSEEEEEGGGHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCHHHHHHHHT
T ss_pred EEeccchhhcchhhhhhhhHHHHhhcccEEEEecccccccHHHHHHHHHHHHHcCCeEeeccccchhhhhhHHHHHHHhh
Confidence 44433 3588888887765667889999999999863 5667888999999999999994 23567788899
Q ss_pred cCcEEecCcccchhhcCC----CChHHHHHHHHHcC------CCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHH
Q 046789 159 LASYAVCSAKFPQVWTEA----PSVPSALVSMLLRL------PNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLE 228 (336)
Q Consensus 159 ~~dil~~n~~e~~~l~~~----~~~~~~~~~~l~~~------~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~ 228 (336)
++|++++|++|+..+.+. .+..+.+++.+... .+.+.+|+|+|++|++++..+...
T Consensus 235 ~~Dil~~Ne~Ea~~l~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~-------------- 300 (372)
T 3uq6_A 235 YSNIVFGNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSE-------------- 300 (372)
T ss_dssp TCSEEEEEHHHHHHHHHHTTCCSSHHHHHHHHHHHSCCTTCCCCCCEEEEEETTEEEEEEESSCSS--------------
T ss_pred cCCcccCCHHHHHHHhCCCCCchhHHHHHHHHHhhhhhhhhcCCceEEEEcCCCCceEEecCCCce--------------
Confidence 999999999999988753 23445555555432 367889999999999998765432
Q ss_pred HHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHH
Q 046789 229 QLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAA 308 (336)
Q Consensus 229 ~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~ 308 (336)
...+| +.+.++.++||||||||+|.|||+++|++|+++++|+++|+
T Consensus 301 --------~~~~~--------------------------v~~~~~~~vVDTtGAGDaF~agfl~~l~~g~~l~~a~~~a~ 346 (372)
T 3uq6_A 301 --------IHQFM--------------------------VEQFKDDQIIDTNGAGDAFAAGFIADYIRGKPMITSLHAAV 346 (372)
T ss_dssp --------CEEEC--------------------------CCCCCGGGCCCCTTHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred --------eeeee--------------------------ccCCCCCceeCCCchHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 01122 32335668999999999999999999999999999999999
Q ss_pred HHHHhhccccCCccCCCCCCCccc
Q 046789 309 QVAAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 309 ~~Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
++|+.+|++.|+ .+|+++++++
T Consensus 347 ~aAa~vv~~~Ga--~lp~r~~~~l 368 (372)
T 3uq6_A 347 KAAAYIICRSGF--SLGSRDSYSL 368 (372)
T ss_dssp HHHHHHHTSSSS--CCCCGGGCC-
T ss_pred HHHHHHHcCCCC--CCCChhHHHH
Confidence 999999999998 4799998764
No 14
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}
Probab=100.00 E-value=3.1e-39 Score=302.15 Aligned_cols=262 Identities=17% Similarity=0.167 Sum_probs=213.2
Q ss_pred ceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEe-
Q 046789 13 RIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIH- 91 (336)
Q Consensus 13 ~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~- 91 (336)
..+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++.. .+.+|+.+++..+.++....+.+
T Consensus 28 ~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~gv~~~~v~~-~~~~t~~~~~~~~~~~~~~~~~~~ 106 (346)
T 3ktn_A 28 QLRMNFVGTGVNLLANLAHFQLETALITKLPANRLGEAGKAALRKLGISDQWVGE-KGDHIGSFFAEMGYGIRPTQVTYQ 106 (346)
T ss_dssp CCEEEEECHHHHHHHHHHHTTCEEEEEEEECSSHHHHHHHHHHHHTTCBCTTEEE-CCSCCEEEEEECCBTTBCCEEEEC
T ss_pred eeEEeccCHHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHcCCcceEEEe-CCCceEEEEEEecCCCCCceEEec
Confidence 4558999999999999999999999999999999999999999999999999976 46678888887765433334444
Q ss_pred c--CCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH-------HHHHHHHHHHHhCCCcEEEeCC------------cc
Q 046789 92 T--PGD-PPMIPDDLSESTIFSALDGARILYLDGRLP-------DTAIIVAQEAARKNIPILIDTE------------RQ 149 (336)
Q Consensus 92 ~--~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-------~~~~~~~~~a~~~~~~v~~d~~------------~~ 149 (336)
. .+. ..+++++++. .+.++.++++|++++.+ +.+.++++.++++++++++|+. ..
T Consensus 107 ~~~~~a~~~l~~~~~~~---~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~r~~~~~~~~~~~~ 183 (346)
T 3ktn_A 107 NRHQSAFGISEAKDYDF---EAFLAEVDMVHICGISLSLTEKTRDAALILAQKAHAYQKKVCFDFNYRPSLNTANSALFM 183 (346)
T ss_dssp CCTTSTTTTCCGGGSCH---HHHHTTCSEEEECTHHHHHCHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGCCHHHHHHH
T ss_pred CCCCChhhhCChhhcCh---HHHhCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCEEEEeCCCChHHcCCccHHHH
Confidence 2 222 3677777763 45689999999998764 4567899999999999999994 12
Q ss_pred hHhHHHhhhcCcEEecCcccchhhcCCC-C-------hHHHHHHHHHcCCCCcEEEEeecCCc-------eEEEeeccCC
Q 046789 150 RERIDEFLKLASYAVCSAKFPQVWTEAP-S-------VPSALVSMLLRLPNLRFAIVTLGEDG-------CIMLERSVNE 214 (336)
Q Consensus 150 ~~~~~~~l~~~dil~~n~~e~~~l~~~~-~-------~~~~~~~~l~~~~~~~~vvvt~G~~G-------~~~~~~~~~~ 214 (336)
.+.+..+++++|++++|++|+..+++.. . ..+.+++.+....+++.||+|+|++| ++++..+...
T Consensus 184 ~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~vvvT~G~~G~~~~~~g~~~~~~~~~~ 263 (346)
T 3ktn_A 184 RQQYERILPYCDIVFGSRRDLVELLGFIPREDLEGEAQETELIQRFMSQYNLEWFAGTTRSHSQNQNYLSGYLYTQNEYQ 263 (346)
T ss_dssp HHHHHHHGGGCSEEECCHHHHHHTSCCCCCTTSCHHHHHHHHHHHHHHHHTCSEEEEEEEEECSSCEEEEEEEECSSCEE
T ss_pred HHHHHHHHHhCCEEEccHHHHHHHhCCCCCccccchHHHHHHHHHHHHhcCCCEEEEecCccccccCcceEEEEECCceE
Confidence 3567789999999999999999998876 3 23444555544348999999999998 7777644322
Q ss_pred CCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHH
Q 046789 215 SPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYAL 294 (336)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l 294 (336)
++| + ++++++|||||||+|.|||+++|
T Consensus 264 ------------------------~~~--------------------------~---~~v~vvdttGAGDaF~ag~~~~l 290 (346)
T 3ktn_A 264 ------------------------QSE--------------------------K---RPLLNLDRIGAGDAYAAGILYGY 290 (346)
T ss_dssp ------------------------ECC--------------------------C---EECCCSCCTTHHHHHHHHHHHHH
T ss_pred ------------------------EeC--------------------------C---CccccCCCCchhHHHHHHHHHHH
Confidence 444 4 45678999999999999999999
Q ss_pred HhCCChhhHHHHHHHHHHhhccccCCccCCCCCCCccc
Q 046789 295 CANMSPEKMLPFAAQVAAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 295 ~~g~~l~~al~~a~~~Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
++|+++++|+++|+++|+.+|++.|+.+ +|+++|+++
T Consensus 291 ~~g~~l~~a~~~A~a~aa~~v~~~G~~~-~p~~~ev~~ 327 (346)
T 3ktn_A 291 SQNWSLEKAVTFATVNGVLAHTIQGDIP-LTTVKQVNH 327 (346)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTTSSSSCC-CCCHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHhccCCCCC-CCCHHHHHH
Confidence 9999999999999999999999999986 899998863
No 15
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0
Probab=100.00 E-value=5.8e-39 Score=296.94 Aligned_cols=258 Identities=23% Similarity=0.280 Sum_probs=212.6
Q ss_pred EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEec-C
Q 046789 15 VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHT-P 93 (336)
Q Consensus 15 ~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~-~ 93 (336)
+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.+++.++.++.+.+.++. +
T Consensus 37 ~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~ 116 (319)
T 3pl2_A 37 GKYLGGSAANVSVAAARHGHNSALLSRVGNDPFGEYLLAELERLGVDNQYVATDQTFKTPVTFCEIFPPDDFPLYFYREP 116 (319)
T ss_dssp CCEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHHTTEECTTEEEESSSCCCEEEECCBTTTBCCEEEECCS
T ss_pred eecCCCcHHHHHHHHHHCCCceEEEEEeCCCHHHHHHHHHHHHcCCccccEEecCCCCceEEEEEEcCCCCeeEEEecCC
Confidence 488999999999999999999999999999999999999999999999999877888899998888766665555553 2
Q ss_pred CC--CCCCCcccchhhHhhhccCCcEEEEcCCcH------HHHHHHHHHHHhCCCcEEEeCCc----------chHhHHH
Q 046789 94 GD--PPMIPDDLSESTIFSALDGARILYLDGRLP------DTAIIVAQEAARKNIPILIDTER----------QRERIDE 155 (336)
Q Consensus 94 ~~--~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~------~~~~~~~~~a~~~~~~v~~d~~~----------~~~~~~~ 155 (336)
++ ..++++++.. +.++.++++|++++.+ +....+++.+++ +.++++|+.. ..+.+..
T Consensus 117 ~a~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~v~~D~~~~~~~~~~~~~~~~~~~~ 191 (319)
T 3pl2_A 117 KAPDLNIESADVSL----DDVREADILWFTLTGFSEEPSRGTHREILTTRAN-RRHTIFDLDYRPMFWESPEEATKQAEW 191 (319)
T ss_dssp CCGGGGCCGGGSCH----HHHHHCSEEEEEGGGGSSTTHHHHHHHHHHHHTT-CSCEEEECCCCGGGSSCHHHHHHHHHH
T ss_pred CcccccCChhhCCH----HHhccCCEEEEecccccCchhHHHHHHHHHHHHH-CCcEEEeCCCChhhcCCHHHHHHHHHH
Confidence 32 3677777764 5678899999987642 234455665554 6788999841 1456778
Q ss_pred hhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcC
Q 046789 156 FLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKD 235 (336)
Q Consensus 156 ~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (336)
+++++|++++|++|+..+++..+..+. ++.+.. .+++.+++|+|++|++++.++...
T Consensus 192 ~l~~~dil~~N~~E~~~l~g~~~~~~~-~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~--------------------- 248 (319)
T 3pl2_A 192 ALQHSTVAVGNKEECEIAVGETEPERA-GRALLE-RGVELAIVKQGPKGVMAMTKDETV--------------------- 248 (319)
T ss_dssp HHTTCSEEEECHHHHHHHHSCCSHHHH-HHHHHH-TTCSEEEEEEETTEEEEECSSCEE---------------------
T ss_pred HHHhCCEEEcCHHHHHHHcCCCCHHHH-HHHHHh-cCCCEEEEEECCCCeEEEECCceE---------------------
Confidence 999999999999999999987665444 444444 389999999999999998765432
Q ss_pred CCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhc
Q 046789 236 DRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGC 315 (336)
Q Consensus 236 ~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~ 315 (336)
++| + ++++++|||||||+|.|||+++|++|+++++|+++|+++|+++|
T Consensus 249 ---~~~--------------------------~---~~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v 296 (319)
T 3pl2_A 249 ---EVP--------------------------P---FFVDVINGLGAGDAFGGALCHGLLSEWPLEKVLRFANTAGALVA 296 (319)
T ss_dssp ---EEC--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ---EeC--------------------------C---cccCCCCCcCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 444 4 56779999999999999999999999999999999999999999
Q ss_pred cccCCccCCCCCCCccc
Q 046789 316 RALGARTSLPHRTDPRL 332 (336)
Q Consensus 316 ~~~g~~~~~p~~~e~~~ 332 (336)
++.|+..++|+++|++.
T Consensus 297 ~~~G~~~~~p~~~ev~~ 313 (319)
T 3pl2_A 297 SRLECSTAMPTTDEVEA 313 (319)
T ss_dssp TSSCSGGGCCCHHHHHH
T ss_pred hccCCcCCCCCHHHHHH
Confidence 99999888999999874
No 16
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii}
Probab=100.00 E-value=4.8e-40 Score=305.42 Aligned_cols=260 Identities=22% Similarity=0.262 Sum_probs=192.6
Q ss_pred ceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEec
Q 046789 13 RIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHT 92 (336)
Q Consensus 13 ~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~ 92 (336)
..+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++.+.++.+|+.+++..+ +|.+.+..+.
T Consensus 48 ~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~~t~~~~v~~~-~g~~~~~~~~ 126 (327)
T 3hj6_A 48 EYTRHFGGSPANIAVNLSRLGKKVALISRLGADAFGNYLLDVLKGEQIITDGIQQDKERRTTIVYVSKS-TRTPDWLPYR 126 (327)
T ss_dssp EEEEEEECHHHHHHHHHHHTTCCEEEECEEESSHHHHHHHHHHHHTTCBCTTCEEESSSCCCEEEECCC-TTCCCEEEEC
T ss_pred eeeeecCcHHHHHHHHHHHcCCcEEEEEEeCCCHHHHHHHHHHHHcCCCcccEEEcCCCCceEEEEEec-CCCccEEEec
Confidence 344899999999999999999999999999999999999999999999999998777778887777655 4444444443
Q ss_pred CCCCCCCCcccchhhHhhhccCCcEEEEcCCc------HHHHHHHHHHHHhCCCcEEEeCCc----------chHhHHHh
Q 046789 93 PGDPPMIPDDLSESTIFSALDGARILYLDGRL------PDTAIIVAQEAARKNIPILIDTER----------QRERIDEF 156 (336)
Q Consensus 93 ~~~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~------~~~~~~~~~~a~~~~~~v~~d~~~----------~~~~~~~~ 156 (336)
.....++++++.. +.++.++++|++++. .+.+.++++.++++++++++|+.. ..+.+..+
T Consensus 127 ~a~~~~~~~~~~~----~~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ 202 (327)
T 3hj6_A 127 EADMYLQEDDIIF----ELIKRSKVFHLSTFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVEEI 202 (327)
T ss_dssp SGGGGCCSCCCHH----HHHC--CEEEEESHHHHSHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGSCSSSCSHHHHHHH
T ss_pred ChhhhCChhhcCH----hHhccCCEEEECchHhcCchhHHHHHHHHHHHHHCCCEEEEECCCchhhcCCHHHHHHHHHHH
Confidence 3323666666654 567899999999853 256678999999999999999952 24567889
Q ss_pred hhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCC
Q 046789 157 LKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDD 236 (336)
Q Consensus 157 l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (336)
++++|++++|++|+..+++..+..+ +++.+.. .+++.+|+|+|++|+++++.+...
T Consensus 203 l~~~dil~~N~~E~~~l~g~~~~~~-~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~---------------------- 258 (327)
T 3hj6_A 203 ISRADFVKPSLDDARHLFGPDSPEN-YVKRYLE-LGVKAVILTLGEEGVIASDGEEII---------------------- 258 (327)
T ss_dssp HTTCSEECCBHHHHHHHHTTSCSSG-GGGGGTT-TTCSEEEEECSTTCEEEECSSCEE----------------------
T ss_pred HhhCCEEecCHHHHHHHhCCCCHHH-HHHHHHh-CCCCEEEEEECCCceEEEeCCeeE----------------------
Confidence 9999999999999999988754333 3344443 489999999999999998755432
Q ss_pred CCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcc
Q 046789 237 RAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCR 316 (336)
Q Consensus 237 ~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~ 316 (336)
++| + ++++++|||||||+|.|||+++|++|+++++|+++|+++|+.+|+
T Consensus 259 --~~~--------------------------~---~~v~vvdttGAGDaf~ag~~~~l~~g~~~~~a~~~A~a~aa~~v~ 307 (327)
T 3hj6_A 259 --RIP--------------------------A---FSEDAVDVTGAGDAFWSGFICGLLDGYTVKRSIKLGNGVAAFKIR 307 (327)
T ss_dssp --ESC--------------------------S---STTC-----CCHHHHHHHHHHTTSSCSTTHHHHHHHHCCCSSCC-
T ss_pred --EcC--------------------------C---cccccCCCcChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 444 4 567899999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCCCCccc
Q 046789 317 ALGARTSLPHRTDPRL 332 (336)
Q Consensus 317 ~~g~~~~~p~~~e~~~ 332 (336)
+.|+..++|+++|+++
T Consensus 308 ~~G~~~~~p~~~ev~~ 323 (327)
T 3hj6_A 308 GVGALSPVPSKEDIIK 323 (327)
T ss_dssp ----------------
T ss_pred CCCCCCCCCCHHHHHH
Confidence 9999888999999875
No 17
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A
Probab=100.00 E-value=7.3e-39 Score=296.48 Aligned_cols=265 Identities=14% Similarity=0.170 Sum_probs=216.0
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.+|.+ .+++..+ ..+||++.|+|.++++||.++.++|.+|+| +|+.+++.|++.||+++++...++ +|+.++
T Consensus 19 ~v~~~-~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i~~~l~~~gv~~~~v~~~~~-~t~~~~ 95 (320)
T 3ie7_A 19 IRGEL-EKRKTNRVIKTEFDCGGKGLHVSGVLSKFGIKNEALGIAGSD-NLDKLYAILKEKHINHDFLVEAGT-STRECF 95 (320)
T ss_dssp ESSSC-CTTSCCCCSEEEEEEESHHHHHHHHHHHHTCCEEEEEEEEST-THHHHHHHHHHTTCCBCCEEETTC-CCEEEE
T ss_pred EcCCc-cCCCeeEeceeeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHHHHHHHHcCCceEEEEecCC-CCceEE
Confidence 35666 6666555 899999999999999999999999999998 999999999999999999844344 799999
Q ss_pred EEEcCCCCe-eEEEecCCCCCCCCcccch--hhHhhhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCCcc
Q 046789 78 VIVDNQMKT-RTCIHTPGDPPMIPDDLSE--STIFSALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTERQ 149 (336)
Q Consensus 78 ~~~~~~g~~-~~~~~~~~~~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~~~ 149 (336)
++++ +|.. ++.+..++ ..+++++++. +.+.+.++.++++|++++.+ +.+..+++.++++++++++|+..
T Consensus 96 ~~~~-~g~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~- 172 (320)
T 3ie7_A 96 VVLS-DDTNGSTMIPEAG-FTVSQTNKDNLLKQIAKKVKKEDMVVIAGSPPPHYTLSDFKELLRTVKATGAFLGCDNSG- 172 (320)
T ss_dssp EEEE-TTCSCCEEEECCC-CCCCHHHHHHHHHHHHHHCCTTCEEEEESCCCTTCCHHHHHHHHHHHHHHTCEEEEECCH-
T ss_pred EEEE-CCCceeEEEeCCC-CCCCHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCEEEEECCh-
Confidence 8888 5442 66677766 4666666654 23346789999999988764 67778999999999999999963
Q ss_pred hHhHHHhhh-cCcEEecCcccchhhcCCCCh--HHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHH
Q 046789 150 RERIDEFLK-LASYAVCSAKFPQVWTEAPSV--PSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSL 226 (336)
Q Consensus 150 ~~~~~~~l~-~~dil~~n~~e~~~l~~~~~~--~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~ 226 (336)
+.+...+. .+|++++|++|+..+++.... .+.+.+.+ +. .+.+|+|+|++|++++..++..
T Consensus 173 -~~l~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~-~~--~~~vvvt~G~~G~~~~~~~~~~------------ 236 (320)
T 3ie7_A 173 -EYLNLAVEMGVDFIKPNEDEVIAILDEKTNSLEENIRTLA-EK--IPYLVVSLGAKGSICAHNGKLY------------ 236 (320)
T ss_dssp -HHHHHHHHHCCSEECCBTTGGGGGSCTTCCCHHHHHHHHT-TT--CSEEEEECGGGCEEEEETTEEE------------
T ss_pred -HHHHHHHhcCCeEEeeCHHHHHHHhCCCcCCCHHHHHHHH-hh--CCEEEEEcCCCceEEEeCCcEE------------
Confidence 34566665 999999999999999987653 34444443 32 8999999999999998765432
Q ss_pred HHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHH
Q 046789 227 LEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPF 306 (336)
Q Consensus 227 ~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~ 306 (336)
++| + ++++++|||||||+|.|||+++|++|+++++|+++
T Consensus 237 ------------~~~--------------------------~---~~v~vvdttGAGDaF~ag~~~~l~~g~~~~~a~~~ 275 (320)
T 3ie7_A 237 ------------QVI--------------------------P---PKVQERNDTGAGDVFVGAFIAGLAMNMPITETLKV 275 (320)
T ss_dssp ------------EEE--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ------------EEe--------------------------C---CccCCCCCcCchHHHHHHHHHHHHcCCCHHHHHHH
Confidence 444 4 56789999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCccCCCCCCCccc
Q 046789 307 AAQVAAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 307 a~~~Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
|+++|+++|++.|+ .+|+++|+++
T Consensus 276 A~a~aa~~v~~~G~--~~~~~~ev~~ 299 (320)
T 3ie7_A 276 ATGCSASKVMQQDS--SSFDLEAAGK 299 (320)
T ss_dssp HHHHHHHHHTSSSS--SCCCHHHHHH
T ss_pred HHHHHHHHHhCcCC--CCCCHHHHHH
Confidence 99999999999995 5799988763
No 18
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=4e-39 Score=297.26 Aligned_cols=266 Identities=23% Similarity=0.312 Sum_probs=215.7
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCC-ceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLN-PRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFT 76 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~-v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~ 76 (336)
.++.+|.+++.++ ..+||++.|+|.++++||.+ +.++|.+|+|.+|+.+++.|++.|| ++...++.+|+.+
T Consensus 30 ~~~~~p~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~i~~vG~D~~G~~l~~~L~~~gV---~v~~~~~~~T~~~ 106 (311)
T 1vm7_A 30 KVDHFTKPGETQKAIEMNVFPGGKGANQAVTVAKIGEKGCRFVTCIGNDDYSDLLIENYEKLGI---TGYIRVSLPTGRA 106 (311)
T ss_dssp ECSSCCCTTCEEECSEEEEEEECHHHHHHHHHHHHHSSCEEEEEEECSSHHHHHHHHHHHHTTE---EEEEECSSCCCEE
T ss_pred ecccCCCCCceEecCeeeecCCCHHHHHHHHHHHcCCCceEEEEEECCChHHHHHHHHHHHCCC---EEEEcCCCCCeEE
Confidence 4678888887665 68999999999999999999 9999999999999999999999999 6666567789999
Q ss_pred EEEEcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCcchHhHHH
Q 046789 77 YVIVDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTERQRERIDE 155 (336)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~ 155 (336)
+++++.+|.+++..+. +. ..+++++++. +.++.++++++++..+... +.+.+++.++++++|+....+....
T Consensus 107 ~~~~~~~g~~~~~~~~-ga~~~l~~~~~~~----~~~~~~~~v~~~~~~~~~~--~~~~a~~~~~~v~~Dp~~~~~~~~~ 179 (311)
T 1vm7_A 107 FIEVDKTGQNRIIIFP-GANAELKKELIDW----NTLSESDILLLQNEIPFET--TLECAKRFNGIVIFDPAPAQGINEE 179 (311)
T ss_dssp EEEECTTSCEEEEEEC-GGGGGCCGGGCCH----HHHTTCSEEEECSSSCHHH--HHHHHHHCCSEEEECCCSCTTCCGG
T ss_pred EEEECCCCCEEEEEec-CccccCCHHHhCh----hhcccCCEEEEeCCCCHHH--HHHHHHHcCCEEEEeCcchhhhhHH
Confidence 9999876655554444 43 3677777763 5578999999998776432 2233788899999999754445567
Q ss_pred hhhcCcEEecCcccchhhcCC----CChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHh
Q 046789 156 FLKLASYAVCSAKFPQVWTEA----PSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLK 231 (336)
Q Consensus 156 ~l~~~dil~~n~~e~~~l~~~----~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (336)
+++++|++++|++|+..+++. ....+.+++.+... +++.|++|+|++|+++++.+...
T Consensus 180 ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~-g~~~vvvT~G~~G~~~~~~~~~~----------------- 241 (311)
T 1vm7_A 180 IFQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLEL-GVKNVIVKLGDKGVLLVNKNEKK----------------- 241 (311)
T ss_dssp GGGGCSEECCBHHHHHHHHHHHHSCCCCHHHHHHHHHHT-TCSEEEEECGGGCEEEEETTEEE-----------------
T ss_pred HHhhCCEEeCCHHHHHHHhCCCCCChhHHHHHHHHHHHc-CCCEEEEEECCCCeEEEeCCceE-----------------
Confidence 889999999999999988763 12334445555554 89999999999999887654322
Q ss_pred hhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 046789 232 QRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVA 311 (336)
Q Consensus 232 ~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~A 311 (336)
++| . ++++++|||||||+|.|||+++|++|+++++|+++|+++|
T Consensus 242 -------~~~--------------------------~---~~v~~vdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~a 285 (311)
T 1vm7_A 242 -------HFP--------------------------T---FKVKAVDTTAAGDVFNGAFAVALSEGKNPEEAVIFGTAAA 285 (311)
T ss_dssp -------EEC--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred -------Eec--------------------------C---CCcccCCCCccHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 333 4 5677899999999999999999999999999999999999
Q ss_pred HhhccccCCccCCCCCCCccc
Q 046789 312 AAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 312 a~~~~~~g~~~~~p~~~e~~~ 332 (336)
+.++++.|+.+.+|+++|+++
T Consensus 286 a~~v~~~G~~~~~p~~~ev~~ 306 (311)
T 1vm7_A 286 AISVTRLGAQSSIPAREEVEA 306 (311)
T ss_dssp HHHTTSSSSGGGCCCHHHHHH
T ss_pred HHHhCcCCccccCCCHHHHHH
Confidence 999999999888899998763
No 19
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*
Probab=100.00 E-value=5.5e-39 Score=301.27 Aligned_cols=259 Identities=19% Similarity=0.253 Sum_probs=218.0
Q ss_pred EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCC
Q 046789 15 VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPG 94 (336)
Q Consensus 15 ~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~ 94 (336)
+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++++++.+|.+.+..+...
T Consensus 76 ~~~~GG~~~N~A~~la~LG~~~~~ig~vG~D~~G~~l~~~l~~~GV~~~~~~~~~~~~T~~~~v~v~~~g~r~~~~~~ga 155 (352)
T 4e3a_A 76 LEASGGSAGNTAAGVANLGGKAAYFGNVAADQLGDIFTHDIRAQGVHYQTKPKGAFPPTARSMIFVTEDGERSMNTYLGA 155 (352)
T ss_dssp EEEECCHHHHHHHHHHHHTCCEEEECCCCSSHHHHHHHHHHHHTTCEECCCCCCSSSCCEEEEEEECTTSCEEEEEECGG
T ss_pred cEecCCHHHHHHHHHHHcCCCeEEEEEECCChHHHHHHHHHHHcCCccceeeccCCCCCeEEEEEEcCCCceEEEeccCh
Confidence 47899999999999999999999999999999999999999999999999877667789999999987665544444433
Q ss_pred CCCCCCcccchhhHhhhccCCcEEEEcCCc------HHHHHHHHHHHHhCCCcEEEeCCc------chHhHHHhhh--cC
Q 046789 95 DPPMIPDDLSESTIFSALDGARILYLDGRL------PDTAIIVAQEAARKNIPILIDTER------QRERIDEFLK--LA 160 (336)
Q Consensus 95 ~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~------~~~~~~~~~~a~~~~~~v~~d~~~------~~~~~~~~l~--~~ 160 (336)
...++++++.. +.++.++++|+++++ .+.+.++++.++++++++++|+.. ..+.+.++++ ++
T Consensus 156 ~~~l~~~~~~~----~~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~ll~~~~~ 231 (352)
T 4e3a_A 156 CVELGPEDVEA----DVVADAKVTYFEGYLWDPPRAKEAILDCARIAHQHGREMSMTLSDSFCVDRYRGEFLDLMRSGKV 231 (352)
T ss_dssp GGGCCGGGCCH----HHHHTEEEEEEEGGGGSSSSHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHTTSC
T ss_pred hhcCChhhCCH----HHHhhCCEEEEeeeecCCchHHHHHHHHHHHHHHcCCEEEEECCchhhHHHHHHHHHHHhcccCC
Confidence 34788888875 568899999999874 256778999999999999999953 2456778888 99
Q ss_pred cEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCC
Q 046789 161 SYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAV 240 (336)
Q Consensus 161 dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 240 (336)
|++++|++|+..+++..+.. .+++.+.. +.+.+|+|+|++|++++..++.. ++
T Consensus 232 dil~~N~~Ea~~l~g~~~~~-~a~~~l~~--~~~~vvvT~G~~G~~~~~~~~~~------------------------~~ 284 (352)
T 4e3a_A 232 DIVFANRQEALSLYQTDDFE-EALNRIAA--DCKIAAVTMSENGAVILKGRERY------------------------YV 284 (352)
T ss_dssp CEEEEEHHHHHHHTTCSCHH-HHHHHHHH--HSSEEEEECGGGCEEEEETTEEE------------------------EE
T ss_pred cEEEeCHHHHHHHhCCCCHH-HHHHHHhc--CCCEEEEEECCCceEEEECCEEE------------------------EE
Confidence 99999999999999876554 44455554 68899999999999998765432 44
Q ss_pred ccccchhhhhhhccCcccccceeeecccccCCCC-CccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccC
Q 046789 241 PTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPS-ELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALG 319 (336)
Q Consensus 241 p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g 319 (336)
| + +++ +++|||||||+|.|||+++|++|+++++|+++|+++|+.+|++.|
T Consensus 285 ~--------------------------~---~~v~~vvDttGAGDaF~agfl~~l~~g~~l~~a~~~A~~aAa~~v~~~G 335 (352)
T 4e3a_A 285 N--------------------------A---IRIREVVDTTGAGDLFASGFLYGYTQGRSLEDCGKLGCLAAGIVIQQIG 335 (352)
T ss_dssp C--------------------------C---CCCSCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSSS
T ss_pred C--------------------------C---ccCCCCcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCC
Confidence 4 4 444 489999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCcccc
Q 046789 320 ARTSLPHRTDPRLA 333 (336)
Q Consensus 320 ~~~~~p~~~e~~~~ 333 (336)
+.+..|.++++++.
T Consensus 336 ~~~~~~~~~~~~~~ 349 (352)
T 4e3a_A 336 PRPMTSLSEAAKQA 349 (352)
T ss_dssp SSCSSCHHHHHHHT
T ss_pred CCCCcCHHHHHHHh
Confidence 99988888877654
No 20
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Probab=100.00 E-value=4e-38 Score=290.16 Aligned_cols=254 Identities=20% Similarity=0.249 Sum_probs=210.2
Q ss_pred eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecC
Q 046789 14 IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTP 93 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~ 93 (336)
.+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++ +|+.+++.++.+|.+++.++..
T Consensus 28 ~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~D~~g~~i~~~L~~~gv~~~~v~~~~~-~t~~~~~~~~~~g~~~~~~~~~ 106 (309)
T 1v1a_A 28 LEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFRRAPG-FTGLYLREYLPLGQGRVFYYRK 106 (309)
T ss_dssp EEEEEECHHHHHHHHHHHHTCCEEEEEEECSSHHHHHHHHHHHHHTCBCTTEEECSS-CCCEEEEEECTTSCEEEEEECT
T ss_pred eeeecCcHHHHHHHHHHHcCCCeEEEEEeCCCHHHHHHHHHHHHcCCCCceEEEcCC-CCEEEEEEECCCCCceEEEeCC
Confidence 458999999999999999999999999999999999999999999999999987667 8999998887766555544432
Q ss_pred -CC-CCCCCcccchhhHhhhccCCcEEEEcCCcH-------HHHHHHHHHHHhCCCcEEEeCCc---------chHhHHH
Q 046789 94 -GD-PPMIPDDLSESTIFSALDGARILYLDGRLP-------DTAIIVAQEAARKNIPILIDTER---------QRERIDE 155 (336)
Q Consensus 94 -~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-------~~~~~~~~~a~~~~~~v~~d~~~---------~~~~~~~ 155 (336)
+. ..++++++.. ..++.++++|++++.+ +.+..+++.++++++++++|+.. ..+.+.+
T Consensus 107 ~~a~~~~~~~~~~~----~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~ 182 (309)
T 1v1a_A 107 GSAGSALAPGAFDP----DYLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLWSPEEARGFLER 182 (309)
T ss_dssp TCSGGGCCTTSSCG----GGGTTCSEEEEETTGGGSCHHHHHHHHHHHHHHHTTTCEEEEECCCCTTTSCHHHHHHHHHH
T ss_pred CChhhhCCHhhCCh----hHhcCCCEEEEeCchhccCchHHHHHHHHHHHHHHcCCEEEEeCCCCcccCCHHHHHHHHHH
Confidence 22 3677777765 4578999999998754 35567888999999999999953 1245677
Q ss_pred hhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcC
Q 046789 156 FLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKD 235 (336)
Q Consensus 156 ~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (336)
+++++|++++|++|+..+++.. +++++ . .+++.||+|+|++|+++ ..+...
T Consensus 183 ~l~~~dil~~N~~E~~~l~g~~---~~~~~---~-~g~~~vvvt~G~~G~~~-~~~~~~--------------------- 233 (309)
T 1v1a_A 183 ALPGVDLLFLSEEEAELLFGRV---EEALR---A-LSAPEVVLKRGAKGAWA-FVDGRR--------------------- 233 (309)
T ss_dssp HGGGCSEEEEEHHHHHHHHSSH---HHHHH---H-TCCSEEEEECGGGCEEE-EETTEE---------------------
T ss_pred HHHhCCEEECcHHHHHHHhCCH---HHHHH---h-cCCCEEEEEecCCCeeE-ecCCcE---------------------
Confidence 8999999999999999998754 33333 2 38999999999999988 542211
Q ss_pred CCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhc
Q 046789 236 DRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGC 315 (336)
Q Consensus 236 ~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~ 315 (336)
.++| + ++++++|||||||+|.|||+++|++|+++++|+++|+++|+.+|
T Consensus 234 --~~~~--------------------------~---~~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~a~~~aa~~v 282 (309)
T 1v1a_A 234 --VEGS--------------------------A---FAVEAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLANLLGASVA 282 (309)
T ss_dssp --EECC--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred --EEeC--------------------------C---CCCCcCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 1344 4 56678999999999999999999999999999999999999999
Q ss_pred cccCCccCCCCCCCccc
Q 046789 316 RALGARTSLPHRTDPRL 332 (336)
Q Consensus 316 ~~~g~~~~~p~~~e~~~ 332 (336)
++.|+.+++|+++++++
T Consensus 283 ~~~G~~~~~~~~~~v~~ 299 (309)
T 1v1a_A 283 ASRGDHEGAPYREDLEV 299 (309)
T ss_dssp TSSTTTTTCCCHHHHTT
T ss_pred cCCCCCcCCCCHHHHHH
Confidence 99999888899988753
No 21
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=2.6e-39 Score=299.20 Aligned_cols=274 Identities=19% Similarity=0.183 Sum_probs=217.8
Q ss_pred CCCCCCCCc----eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEE
Q 046789 5 PLPPLPENR----IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIV 80 (336)
Q Consensus 5 ~~~p~~~~~----~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~ 80 (336)
+..|.+++. .+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||++++ ...++.+|+.+++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~l~~~L~~~gV~~~~-~~~~~~~T~~~~~~~ 99 (317)
T 2nwh_A 21 ETETAPGASNPGSWMEEAGGGGFNAARNLSRLGFEVRIIAPRGGDVTGEVVAEAARQAGVEDTP-FTFLDRRTPSYTAIL 99 (317)
T ss_dssp SSSCCTTSCCCEEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHHHHHHHHTTCEECC-EEETTSCCCEEEEEE
T ss_pred CCCCCCCCCceEeEEEeCCcHHHHHHHHHHhcCCCcEEEEeecCCchHHHHHHHHHHcCCCCCC-cccCCCCCceEEEEE
Confidence 445666654 348899999999999999999999999999999999999999999999999 455677899999999
Q ss_pred cCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH-HHHHHHHHHHHhCCCcEEEeCCcc--hHhHHHh
Q 046789 81 DNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLP-DTAIIVAQEAARKNIPILIDTERQ--RERIDEF 156 (336)
Q Consensus 81 ~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~a~~~~~~v~~d~~~~--~~~~~~~ 156 (336)
+.+|.+++.++..+. ..++++++....+.+.++.++++++++..+ +.+..+++.++++++++++|+... .+.+..+
T Consensus 100 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~l 179 (317)
T 2nwh_A 100 ERDGNLVIALADMDLYKLFTPRRLKVRAVREAIIASDFLLCDANLPEDTLTALGLIARACEKPLAAIAISPAKAVKLKAA 179 (317)
T ss_dssp CTTSCEEEEEEECGGGGGCCHHHHTSHHHHHHHHHCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEECCSHHHHGGGTTT
T ss_pred cCCCCEEEEEcchHHHhhCCHHHhhhhhhhhHhccCCEEEEeCCCCHHHHHHHHHHHHhcCCeEEEeCCCHHHHHHHHHH
Confidence 877766665555443 246665554311115678899999988754 677789999999999999999632 2345677
Q ss_pred hhcCcEEecCcccchhhcCCC-ChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcC
Q 046789 157 LKLASYAVCSAKFPQVWTEAP-SVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKD 235 (336)
Q Consensus 157 l~~~dil~~n~~e~~~l~~~~-~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (336)
++++|++++|++|+..+++.. ...+.+++.+... +++.||+|+|++|++++..++..
T Consensus 180 l~~~dil~~N~~E~~~l~g~~~~~~~~~~~~l~~~-g~~~vvvt~G~~G~~~~~~~~~~--------------------- 237 (317)
T 2nwh_A 180 LGDIDILFMNEAEARALTGETAENVRDWPNILRKA-GLSGGVVTRGASEVVAFNGTEKA--------------------- 237 (317)
T ss_dssp GGGCSEEEEEHHHHHHHHC-----CTTHHHHHHHT-TCCCEEEEETTTEEEEECSSCEE---------------------
T ss_pred hhhCeEecCCHHHHHHHhCCChhHHHHHHHHHHHc-CCCEEEEEECCCcEEEEcCCCce---------------------
Confidence 899999999999999998751 1222344444443 89999999999999887654221
Q ss_pred CCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhc
Q 046789 236 DRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGC 315 (336)
Q Consensus 236 ~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~ 315 (336)
.++| + ++++++|||||||+|.|||+++|++|+++++|+++|+++|+.+|
T Consensus 238 --~~~~--------------------------~---~~v~~vdt~GAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v 286 (317)
T 2nwh_A 238 --ILHP--------------------------P---LIREVKDVTGAGDAMASGYLAAIAEGKTIREALRQGAAAAAITV 286 (317)
T ss_dssp --EECC--------------------------C---CSSSCSCCCCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred --EEeC--------------------------C---CCccccCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 1333 4 56789999999999999999999999999999999999999999
Q ss_pred cccCCccCCCCCCCccc
Q 046789 316 RALGARTSLPHRTDPRL 332 (336)
Q Consensus 316 ~~~g~~~~~p~~~e~~~ 332 (336)
++.|+...+|+++++++
T Consensus 287 ~~~G~~~~~~~~~~v~~ 303 (317)
T 2nwh_A 287 QSSFATSQDLSKDSVEA 303 (317)
T ss_dssp SSTTCCGGGCCHHHHHH
T ss_pred cCCCCCCCCCCHHHHHh
Confidence 99999987899988864
No 22
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae}
Probab=100.00 E-value=8.5e-39 Score=301.45 Aligned_cols=265 Identities=18% Similarity=0.264 Sum_probs=211.6
Q ss_pred eEEecCCchHHHHHHHHHc---CCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEE
Q 046789 14 IVVQGGGNAGNALTCAARL---GLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCI 90 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~L---G~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~ 90 (336)
.+..+||++.|+|.++++| |.++.++|.+|+|.+|+.+++.|++.||+++++.. ++.+|+.++++++ + +.|+++
T Consensus 75 ~~~~~GG~~~N~a~~~~~L~~lG~~~~~ig~vG~D~~g~~~~~~l~~~GV~~~~~~~-~~~~Tg~~~i~~~-~-~~r~~~ 151 (365)
T 3loo_A 75 AEYIAGGSVQNSLRVAQWILQRPRTAIFFGCVGQDEYARILEERATSNGVNVQYQRS-ATSPTGTCAVLVT-G-TQRSLC 151 (365)
T ss_dssp CEEEEECHHHHHHHHHHHHHTCTTSEEEEEEEESBHHHHHHHHHHHHHTCEEEEEEE-SSSCCEEEEEEEE-T-TEEEEE
T ss_pred eEEecCCHHHHHHHHHHHhhcCCCcEEEEEEecCCchHHHHHHHHHHCCCceecccc-CCCCCeEEEEEEE-C-CceEEE
Confidence 3479999999999999987 99999999999999999999999999999999876 6778999999988 4 467766
Q ss_pred ecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCc----HHHHHHHHHHHHhCCCcEEEeCCc------chHhHHHhhhc
Q 046789 91 HTPGD-PPMIPDDLSESTIFSALDGARILYLDGRL----PDTAIIVAQEAARKNIPILIDTER------QRERIDEFLKL 159 (336)
Q Consensus 91 ~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~----~~~~~~~~~~a~~~~~~v~~d~~~------~~~~~~~~l~~ 159 (336)
...++ ..++++++......+.++.++++|++++. ++.+.++++.++++++++++|+.. ..+.+..++++
T Consensus 152 ~~~ga~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~l~~~l~~ 231 (365)
T 3loo_A 152 ANLAAANDFTPEHLRSDGNRAYLQGAQFFYVSGFFFTVSFESALSVAKEAAATGRMFMMNLSAPFVPQFYKNNLEEIFPY 231 (365)
T ss_dssp EECGGGGGCCGGGGGSHHHHHHHHHCSEEEEEGGGHHHHHHHHHHHHHHHHHTTCEEEEECCSTHHHHHCHHHHHHHGGG
T ss_pred eccchHhhCCHhHcCchhhHHHHhhCCEEEEeeeeccCCHHHHHHHHHHHHHcCCEEEEECCchhhhHHHHHHHHHHHHh
Confidence 65554 47888888754455678999999999875 356678899999999999999852 24567889999
Q ss_pred CcEEecCcccchhhcCC----CChHHHHHHHHHcC-----CCCcEEEEeecCCceEEE--eeccCCCCchhhhhhhHHHH
Q 046789 160 ASYAVCSAKFPQVWTEA----PSVPSALVSMLLRL-----PNLRFAIVTLGEDGCIML--ERSVNESPELEEIDVDSLLE 228 (336)
Q Consensus 160 ~dil~~n~~e~~~l~~~----~~~~~~~~~~l~~~-----~~~~~vvvt~G~~G~~~~--~~~~~~~~~~~~~~~~~~~~ 228 (336)
+|++++|++|+..+++. ....+++++.+... .+++.+|+|+|++|++++ ..++..
T Consensus 232 ~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvT~G~~Ga~~~~~~~~~~~-------------- 297 (365)
T 3loo_A 232 VDVLFGNETEAIALAKEFNYGTEDLREIGKRIAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVR-------------- 297 (365)
T ss_dssp CSEEEEEHHHHHHHHHHTTCCCCCHHHHHHHHHTSCCSSTTSCCEEEEEETTEEEEEEETTCSCCE--------------
T ss_pred CCEEecCHHHHHHHhcccCCCCCCHHHHHHHHHhhhhhccCCCCEEEEEeCCCCEEEEEecCCeEE--------------
Confidence 99999999999988763 23445566666654 378999999999999998 443322
Q ss_pred HHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHH
Q 046789 229 QLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAA 308 (336)
Q Consensus 229 ~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~ 308 (336)
++| +++.++.+++|||||||+|.|||+++|++|+++++|+++|+
T Consensus 298 ----------~~~--------------------------~~~v~~~~vvDttGAGDaF~agfl~~l~~g~~l~~a~~~a~ 341 (365)
T 3loo_A 298 ----------EFP--------------------------VQKLAPEQMVDTNGAGDAFVGGFLAQLLQSRTVDVCIKCGI 341 (365)
T ss_dssp ----------EEC--------------------------CCCCC------CTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ----------EEe--------------------------ccccCCCCccCCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 444 43222348999999999999999999999999999999999
Q ss_pred HHHHhhccccCCccCCCCCCCcccc
Q 046789 309 QVAAAGCRALGARTSLPHRTDPRLA 333 (336)
Q Consensus 309 ~~Aa~~~~~~g~~~~~p~~~e~~~~ 333 (336)
++|+.+|++.|+.. |+++++..+
T Consensus 342 ~~Aa~~v~~~G~~~--p~~~~~~~~ 364 (365)
T 3loo_A 342 WAAREIIQRSGCTF--EGEPSFCAD 364 (365)
T ss_dssp HHHHHHHHHGGGGG--GSCCCC---
T ss_pred HHHHHHHcCCCCCC--CCCccCCCC
Confidence 99999999999864 888777644
No 23
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*
Probab=100.00 E-value=3.9e-39 Score=297.23 Aligned_cols=251 Identities=22% Similarity=0.322 Sum_probs=212.8
Q ss_pred CCCCCCCCCc-----eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 4 DPLPPLPENR-----IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 4 ~~~~p~~~~~-----~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
++.+|.+++. .+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++.. .+.+|+.+++
T Consensus 36 v~~~p~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~~gV~~~~v~~-~~~~T~~~~~ 114 (310)
T 3go6_A 36 VDALPRPGETVLAASLTRTPGGKGANQAVAAARAGAQVQFSGAFGDDPAAAQLRAHLRANAVGLDRTVT-VPGPSGTAII 114 (310)
T ss_dssp CSSCCCTTCCCCCSEEEEEEECHHHHHHHHHHHTTCEEEEECEECSSHHHHHHHHHHHHTTCBCTTCEE-CSSCCEEEEE
T ss_pred cCCCCCCCCeEEecceeecCCCHHHHHHHHHHHCCCCeEEEEEECCCHHHHHHHHHHHHcCCccceeEe-cCCCCCEEEE
Confidence 5777888764 348999999999999999999999999999999999999999999999999965 4668999999
Q ss_pred EEcCCCCeeEEEecCCCC-CCCCcccchhhHhhhccCCcEEEEcCCcH-HHHHHHHHHHHhCCCcEEEeCCc---chHhH
Q 046789 79 IVDNQMKTRTCIHTPGDP-PMIPDDLSESTIFSALDGARILYLDGRLP-DTAIIVAQEAARKNIPILIDTER---QRERI 153 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~a~~~~~~v~~d~~~---~~~~~ 153 (336)
+++.+|.+....+ .+.+ .++ ++ .+.++.++++++++..+ +.+..+++.++++++++++|+.. .++.+
T Consensus 115 ~~~~~g~~~~~~~-~ga~~~l~--~~-----~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ 186 (310)
T 3go6_A 115 VVDASAENTVLVA-PGANAHLT--PV-----PSAVANCDVLLTQLEIPVATALAAARAAQSADAVVMVNASPAGQDRSSL 186 (310)
T ss_dssp EECTTSCEEEEEE-CGGGGGCC--CC-----TTTTTTCSEEEECSSSCHHHHHHHHHHHHHTTCEEEEECCSSSCCHHHH
T ss_pred EEcCCCCEEEEec-CChhhhHH--HH-----HHHhhcCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCccccchHHH
Confidence 9987665544444 4432 343 23 35688999999997764 67778999999999999999953 34566
Q ss_pred HHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhh
Q 046789 154 DEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQR 233 (336)
Q Consensus 154 ~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (336)
..+++++|++++|++|+..+++. .+.+|+|+|++|++++..++..
T Consensus 187 ~~ll~~~dil~~N~~Ea~~l~g~----------------~~~vvvt~G~~Ga~~~~~~~~~------------------- 231 (310)
T 3go6_A 187 QDLAAIADVVIANEHEANDWPSP----------------PTHFVITLGVRGARYVGADGVF------------------- 231 (310)
T ss_dssp HHHHHHCSEEEEEHHHHHHSSSC----------------CSEEEEECGGGCEEEEETTEEE-------------------
T ss_pred HHHHhhCCEEEeCHHHHHHHhCC----------------CCEEEEEECCCCEEEEECCceE-------------------
Confidence 78999999999999999988763 6899999999999998765432
Q ss_pred cCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHh----CCChhhHHHHHHH
Q 046789 234 KDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCA----NMSPEKMLPFAAQ 309 (336)
Q Consensus 234 ~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~----g~~l~~al~~a~~ 309 (336)
++| + ++++++||+||||+|.|||+++|++ |+++++|+++|++
T Consensus 232 -----~~~--------------------------~---~~v~vvdttGAGDaF~ag~~~~l~~~~~~g~~l~~a~~~A~~ 277 (310)
T 3go6_A 232 -----EVP--------------------------A---PTVTPVDTAGAGDVFAGVLAANWPRNPGSPAERLRALRRACA 277 (310)
T ss_dssp -----EEC--------------------------C---CCCCCSCCTTHHHHHHHHHHHHCCSSSCCHHHHHHHHHHHHH
T ss_pred -----EeC--------------------------C---CCCCcCcCCCchHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 444 4 5678999999999999999999999 9999999999999
Q ss_pred HHHhhccccCCccCCCCCCCccc
Q 046789 310 VAAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 310 ~Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
+|+.+|++.|+.+++|+++|+++
T Consensus 278 ~aa~~v~~~G~~~~~p~~~ev~~ 300 (310)
T 3go6_A 278 AGALATLVSGVGDCAPAAAAIDA 300 (310)
T ss_dssp HHHHHTTSSCSTTCCCCHHHHHH
T ss_pred HHHHHhCCCCCCCCCCCHHHHHH
Confidence 99999999999988999999874
No 24
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Probab=100.00 E-value=2.2e-38 Score=294.60 Aligned_cols=263 Identities=18% Similarity=0.287 Sum_probs=209.6
Q ss_pred ceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeC-CCCccEEEEEEcCCCCeeEEEe
Q 046789 13 RIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSK-EGNSPFTYVIVDNQMKTRTCIH 91 (336)
Q Consensus 13 ~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~-~~~t~~~~~~~~~~g~~~~~~~ 91 (336)
..+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...+ ..+|+.+++.++.+|..+..++
T Consensus 38 ~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~l~~~L~~~gV~~~~v~~~~~~~~t~~~~v~~~~~g~~~~~~~ 117 (332)
T 2qcv_A 38 TFSKYVGGSPANIVIGSSKLGLKAGFIGKIADDQHGRFIESYMRGVGVDTSNLVVDQEGHKTGLAFTEIKSPEECSILMY 117 (332)
T ss_dssp CEEEEEESHHHHHHHHHHHTTCCEEEEEEECSSHHHHHHHHHHHHTTCBCTTEEECSSCCCCCEEEEEEEETTEEEEEEE
T ss_pred eeEecCCCHHHHHHHHHHHcCCceEEEEEeCCCHHHHHHHHHHHHcCCCCcceEecCCCCCceEEEEEEcCCCCccEEEE
Confidence 445889999999999999999999999999999999999999999999999987754 3578888887666665666555
Q ss_pred cCC-C-CCCCCcccchhhHhhhccCCcEEEEcCCcH------HHHHHHHHHHHhCCCcEEEeCCcc----------hHhH
Q 046789 92 TPG-D-PPMIPDDLSESTIFSALDGARILYLDGRLP------DTAIIVAQEAARKNIPILIDTERQ----------RERI 153 (336)
Q Consensus 92 ~~~-~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~------~~~~~~~~~a~~~~~~v~~d~~~~----------~~~~ 153 (336)
... . ..++++++.. ..+++++++|++++.+ +.+..+++.++++++++++|+... .+.+
T Consensus 118 ~~~~a~~~l~~~~~~~----~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~ 193 (332)
T 2qcv_A 118 RQDVADLYLSPEEVNE----AYIRRSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSWETPEETAVYY 193 (332)
T ss_dssp CTTCGGGGCCGGGCCH----HHHTTEEEEEEEGGGGSSTTHHHHHHHHHHHHHHTTCEEEEECCCCGGGSSCHHHHHHHH
T ss_pred CCcchhhhCCHhHCCH----HHHccCCEEEEeCccccCchhHHHHHHHHHHHHHCCCEEEEcCcCchhhcCCHHHHHHHH
Confidence 532 2 3677777764 4578999999987742 566788999999999999999521 2345
Q ss_pred HHhhhcCcEEecCcccchhhcCCC--ChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHh
Q 046789 154 DEFLKLASYAVCSAKFPQVWTEAP--SVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLK 231 (336)
Q Consensus 154 ~~~l~~~dil~~n~~e~~~l~~~~--~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (336)
..+++++|++++|++|+..+++.. ...+..++.+... +++.+|+|+|++|++++..+...
T Consensus 194 ~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~l~~~-g~~~vvvt~G~~G~~~~~~~~~~----------------- 255 (332)
T 2qcv_A 194 SLVAEQSDIVIGTREEFDVLENRTEKGDNDETIRYLFKH-SPELIVIKHGVEGSFAYTKAGEA----------------- 255 (332)
T ss_dssp HHHHHHCSEEEEEHHHHHHHTTCSSCCCHHHHHHHHTTS-SCSEEEEECGGGCEEEEETTSCE-----------------
T ss_pred HHHHHhCCEEEccHHHHHHHhCCCcCCCHHHHHHHHHHc-CCCEEEEEECCcceEEEecCCce-----------------
Confidence 678899999999999999998864 2334555555554 89999999999999988752221
Q ss_pred hhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 046789 232 QRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVA 311 (336)
Q Consensus 232 ~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~A 311 (336)
.++| + ++++++||+||||+|.|||+++|++|+++++|+++|+++|
T Consensus 256 ------~~~~--------------------------~---~~v~vvdt~GAGDaf~a~~~~~l~~g~~~~~a~~~A~~~a 300 (332)
T 2qcv_A 256 ------YRGY--------------------------A---YKTKVLKTFGAGDSYASAFLYALISGKGIETALKYGSASA 300 (332)
T ss_dssp ------EEEC--------------------------C---BCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ------EEcC--------------------------C---CCccccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1333 4 5678999999999999999999999999999999999999
Q ss_pred HhhccccCCccCCCCCCCccc
Q 046789 312 AAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 312 a~~~~~~g~~~~~p~~~e~~~ 332 (336)
+.+|++.|+.+++|+++|+++
T Consensus 301 a~~v~~~G~~~~~p~~~ev~~ 321 (332)
T 2qcv_A 301 SIVVSKHSSSDAMPSVEEIEA 321 (332)
T ss_dssp HHHHHC-----CCCCHHHHHH
T ss_pred HHHHccCCCccCCCCHHHHHH
Confidence 999999999888899988753
No 25
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}
Probab=100.00 E-value=4.1e-38 Score=291.38 Aligned_cols=264 Identities=19% Similarity=0.228 Sum_probs=209.1
Q ss_pred CceEEecCCchHHHHHHHHHcC----CCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCee
Q 046789 12 NRIVVQGGGNAGNALTCAARLG----LNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTR 87 (336)
Q Consensus 12 ~~~~~~~GG~a~n~a~~l~~LG----~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~ 87 (336)
...+..+||++.|+|.++++|| .++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++++++.+|.++
T Consensus 22 ~~~~~~~GG~~~NvA~~la~LG~~~~~~~~~ig~vG~D~~G~~l~~~L~~~GV~~~~v~~~~~~~T~~~~i~~~~~g~r~ 101 (319)
T 3lhx_A 22 ADVKRGFGGDTLNTSVYIARQVDPAALTVHYVTALGTDSFSQQMLDAWHGENVDTSLTQRMENRLPGLYYIETDSTGERT 101 (319)
T ss_dssp -CCEEEEECHHHHHHHHHHTTSCTTTEEEEEECEECSSHHHHHHHHHHHTTTEECTTCEECTTCCCCEEEEEC----CCE
T ss_pred CceEEecCChHHHHHHHHHHcCCCCCCcEEEEEEeCCCHHHHHHHHHHHHcCCCcceEEEcCCCCceEEEEEeCCCCCee
Confidence 3456889999999999999999 899999999999999999999999999999998877778999998888766555
Q ss_pred EEEecCCC--C-CCCCcccchhhHhhhccCCcEEEEcCCcH--------HHHHHHHHHHHhCCCcEEEeCCc--------
Q 046789 88 TCIHTPGD--P-PMIPDDLSESTIFSALDGARILYLDGRLP--------DTAIIVAQEAARKNIPILIDTER-------- 148 (336)
Q Consensus 88 ~~~~~~~~--~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~~--------~~~~~~~~~a~~~~~~v~~d~~~-------- 148 (336)
+.++.... + .+++++++. +.+.++.++++|++++.+ +.+.++++.++++++++++|+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~v~~~g~~~~~l~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~ 179 (319)
T 3lhx_A 102 FYYWRNEAAAKFWLASEQSAA--ICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNNYRPRLWASK 179 (319)
T ss_dssp EEEECTTCGGGGTTSSSSHHH--HHHHHTTCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGSSCH
T ss_pred EEEecCCCHHHhccCccchhh--HHHHhcCCCEEEEcCchhhhcCchhHHHHHHHHHHHHhcCCEEEEeCcCCcccccCH
Confidence 44443321 1 355555443 456789999999997542 46678899999999999999952
Q ss_pred --chHhHHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHH
Q 046789 149 --QRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSL 226 (336)
Q Consensus 149 --~~~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~ 226 (336)
..+.+..+++++|++++|.+|+..+++..+..+ +++.+... +++.||+|+|++|++++..++..
T Consensus 180 ~~~~~~~~~ll~~~di~~~n~~E~~~l~g~~~~~~-~~~~l~~~-g~~~vvvt~G~~G~~~~~~~~~~------------ 245 (319)
T 3lhx_A 180 EETQQVYQQMLECTDIAFLTLDDEDALWGQQPVED-VIARTHNA-GVKEVVVKRGADSCLVSIAGEAL------------ 245 (319)
T ss_dssp HHHHHHHHHHHTTCSEEEEEHHHHHHHHCCCCHHH-HHHHHHHT-TCSEEEEEETTEEEEEEETTSCC------------
T ss_pred HHHHHHHHHHHhhCCcccCCHHHHHHHhCCCCHHH-HHHHHHhc-CCCEEEEEECCCCeEEEECCcce------------
Confidence 134567889999999999999999998765544 44444443 89999999999999998765431
Q ss_pred HHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHH
Q 046789 227 LEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPF 306 (336)
Q Consensus 227 ~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~ 306 (336)
.++| +++.++.+++|||||||+|.|||+++|++|+++++|+++
T Consensus 246 -----------~~~~--------------------------~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~ 288 (319)
T 3lhx_A 246 -----------VDVP--------------------------AVKLPKEKVIDTTAAGDSFSAGYLAVRLTGGSAENAAKR 288 (319)
T ss_dssp -----------EEEC--------------------------CCCCCGGGCCCCTTHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred -----------EEcc--------------------------cccCCCCccCCCCCccHHHHHHHHHHHHcCCCHHHHHHH
Confidence 1344 433346789999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCccCCCCCCCc
Q 046789 307 AAQVAAAGCRALGARTSLPHRTDP 330 (336)
Q Consensus 307 a~~~Aa~~~~~~g~~~~~p~~~e~ 330 (336)
|+++|+.++++.|+.. |.....
T Consensus 289 A~~~aa~~v~~~Ga~~--~~~~~~ 310 (319)
T 3lhx_A 289 GHLTASTVIQYRGAII--PREAMP 310 (319)
T ss_dssp HHHHHHHHTTSSSSSC--CGGGCC
T ss_pred HHHHHHhhhccCCCcC--CCCCCc
Confidence 9999999999999864 544443
No 26
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*
Probab=100.00 E-value=3.5e-38 Score=291.00 Aligned_cols=255 Identities=20% Similarity=0.235 Sum_probs=207.2
Q ss_pred eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEE--EcCCCCeeEEEe
Q 046789 14 IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVI--VDNQMKTRTCIH 91 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~--~~~~g~~~~~~~ 91 (336)
.+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.+++. ++.+|.+++.++
T Consensus 28 ~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~~~~~l~~~gv~~~~v~~~~~~~t~~~~~~~~~~~~g~~~~~~~ 107 (313)
T 2v78_A 28 FEKHVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPMKSELVYY 107 (313)
T ss_dssp EEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHHTTCBCTTEEEETTSCCCEEEEEESSSSTTCEEEEEE
T ss_pred eEecCCChHHHHHHHHHHCCCcEEEEEEeCCCHHHHHHHHHHHHcCCcCceEEEcCCCCceEEEEEEecCCCCCeeEEEe
Confidence 458999999999999999999999999999999999999999999999999987777789999888 776665555444
Q ss_pred cC-CC-CCCCCcccchhhHhhhccCCcEEEEcCCcH-------HHHHHHHHHHHhCCCcEEEeCCc----------chHh
Q 046789 92 TP-GD-PPMIPDDLSESTIFSALDGARILYLDGRLP-------DTAIIVAQEAARKNIPILIDTER----------QRER 152 (336)
Q Consensus 92 ~~-~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-------~~~~~~~~~a~~~~~~v~~d~~~----------~~~~ 152 (336)
.. ++ ..++++++.. ..+++++++|++++.+ +.+..+++.++++ ++|+.. ..+.
T Consensus 108 ~~~~a~~~l~~~~~~~----~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~a~~~----~~D~~~~~~~~~~~~~~~~~ 179 (313)
T 2v78_A 108 RKGSAGSRLSPEDINE----NYVRNSRLVHSTGITLAISDNAKEAVIKAFELAKSR----SLDTNIRPKLWSSLEKAKET 179 (313)
T ss_dssp CTTCSGGGCCGGGCCH----HHHHTSSEEEEEHHHHHHCHHHHHHHHHHHHHCSSE----EEECCCCGGGSSCHHHHHHH
T ss_pred CCcChhHhCChhhCCH----HHhcCCCEEEEcCchhhcChHHHHHHHHHHHHHHHh----CcCCcCChhhcCCHHHHHHH
Confidence 32 22 3677777765 4578999999987754 3444566665544 889942 1245
Q ss_pred HHHhhhcCc--EEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHH
Q 046789 153 IDEFLKLAS--YAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQL 230 (336)
Q Consensus 153 ~~~~l~~~d--il~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (336)
+..+++++| ++++|++|+..+++..+.. .+++.+.. .+++.+|+|+|++|++++..+...
T Consensus 180 ~~~~l~~~d~~il~~N~~E~~~l~g~~~~~-~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~---------------- 241 (313)
T 2v78_A 180 ILSILKKYDIEVLITDPDDTKILLDVTDPD-EAYRKYKE-LGVKVLLYKLGSKGAIAYKDNVKA---------------- 241 (313)
T ss_dssp HHHHHHHSCEEEEEECHHHHHHHHSCCCHH-HHHHHHHH-TTEEEEEEECGGGCEEEEETTEEE----------------
T ss_pred HHHHHHhcCeeEEECcHHHHHHHhCCCCHH-HHHHHHHh-CCCCEEEEEECCCCcEEeeCCcEE----------------
Confidence 677889999 9999999999999876544 44444545 389999999999999987543322
Q ss_pred hhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHH
Q 046789 231 KQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQV 310 (336)
Q Consensus 231 ~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~ 310 (336)
++| + ++++++|||||||+|.|||+++|++|+++++|+++|+++
T Consensus 242 --------~~~--------------------------~---~~v~vvDttGAGDaF~ag~~~~l~~g~~~~~a~~~a~~~ 284 (313)
T 2v78_A 242 --------FKD--------------------------A---YKVPVEDPTGAGDAMAGTFVSLYLQGKDIEYSLAHGIAA 284 (313)
T ss_dssp --------EEC--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred --------EeC--------------------------C---CcCCccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 334 4 566799999999999999999999999999999999999
Q ss_pred HHhhccccCCccCCCCCCCcc
Q 046789 311 AAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 311 Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
|+.+|++.|+.+++|++++++
T Consensus 285 aa~~v~~~G~~~~~~~~~~v~ 305 (313)
T 2v78_A 285 STLVITVRGDNELTPTLEDAE 305 (313)
T ss_dssp HHHHHTSSSSSTTCCCHHHHH
T ss_pred HHHHhccCCCCCCCCCHHHHH
Confidence 999999999988889998875
No 27
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
Probab=100.00 E-value=3.2e-38 Score=295.40 Aligned_cols=262 Identities=19% Similarity=0.267 Sum_probs=212.2
Q ss_pred eEEecCCchHHHHHHHHHc----CCC-ceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeE
Q 046789 14 IVVQGGGNAGNALTCAARL----GLN-PRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRT 88 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~L----G~~-v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~ 88 (336)
.+..+||++.|+|.++++| |.+ +.++|.+|+|.+|+.+++.|++.||+++++. .++.+|+.++++++ + +.|+
T Consensus 59 ~~~~~GG~~~N~a~~la~L~~~~G~~~~~~ig~vG~D~~g~~~~~~l~~~GV~~~~~~-~~~~~T~~~~i~~~-~-g~r~ 135 (347)
T 3otx_A 59 VRYVPGGSGLNVARVAQWMQQAYKGKFVTYVGCIADDRYGKVLKEAAEHEGIVMAVEH-TTKAGSGACAVCIT-G-KERT 135 (347)
T ss_dssp CEEEECCHHHHHHHHHHHTTGGGTTSSEEEECEECSSHHHHHHHHHHHHHTCEECCEE-CSSSCEEEEEEEEE-T-TEEE
T ss_pred eEEecCCHHHHHHHHHHHhcccCCCCeEEEEEEecCChHHHHHHHHHHHCCCceeccc-CCCCCCeEEEEEEE-C-Ccee
Confidence 4589999999999999999 999 9999999999999999999999999999985 46778999999887 4 4566
Q ss_pred EEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCc----HHHHHHHHHHHHhCCCcEEEeCCc------chHhHHHhh
Q 046789 89 CIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRL----PDTAIIVAQEAARKNIPILIDTER------QRERIDEFL 157 (336)
Q Consensus 89 ~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~----~~~~~~~~~~a~~~~~~v~~d~~~------~~~~~~~~l 157 (336)
++...++ ..++++++....+.+.++.++++|++++. ++.+.++++.++++++++++|+.. ..+.+.+++
T Consensus 136 ~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~l~~~l 215 (347)
T 3otx_A 136 LVADLGAANHLSSEHMRSPAVVRAMDESRIFYFSGFTLTVDVNHVLQACRKAREVDGLFMINLSAPFIMQFFSAQLGEVL 215 (347)
T ss_dssp EEEEEEGGGGCCHHHHTSHHHHHHHHHCSEEEEEGGGGGTCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCHHHHHHHG
T ss_pred eeechhhhhcCCHHHcCchhhHHHHhhCCEEEEeeeecccCHHHHHHHHHHHHHhCCEEEeeCchhhhHHHHHHHHHHHH
Confidence 6655543 47777777754445678999999998864 467788999999999999999962 246778899
Q ss_pred hcCcEEecCcccchhhcCC----CChHHHHHHHHHc-----CCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHH
Q 046789 158 KLASYAVCSAKFPQVWTEA----PSVPSALVSMLLR-----LPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLE 228 (336)
Q Consensus 158 ~~~dil~~n~~e~~~l~~~----~~~~~~~~~~l~~-----~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~ 228 (336)
+++|++++|++|+..+++. ....+++++.+.. ..+++.||+|+|++|++++..++..
T Consensus 216 ~~~dil~~N~~Ea~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvT~G~~Ga~~~~~~~~~-------------- 281 (347)
T 3otx_A 216 PYTDIIVANRHEAKEFANMMKWDTDCVEEIARRAVSEVPYTGTKGRVVVFTRDIESTVLATKDGVE-------------- 281 (347)
T ss_dssp GGCSEEEEEHHHHHHHHHHHTCCCCCHHHHHHHHHHTSCCCCSSCCEEEEEETTEEEEEEETTEEE--------------
T ss_pred hhCCEEecCHHHHHHHhcccCCCcCCHHHHHHHHHhhhccccCCCCEEEEEeCCCCeEEEECCeEE--------------
Confidence 9999999999999988753 1234555555553 2489999999999999998765432
Q ss_pred HHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHH
Q 046789 229 QLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAA 308 (336)
Q Consensus 229 ~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~ 308 (336)
++| +.+.++.+++|||||||+|.|||+++|++|+++++|+++|+
T Consensus 282 ----------~~~--------------------------~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~l~~a~~~a~ 325 (347)
T 3otx_A 282 ----------TVP--------------------------VPQLDQDKVIDMNGAGDAFMGGFLSAYAVGKDLRRCCETGH 325 (347)
T ss_dssp ----------EEC--------------------------CCCCCGGGCCSSCCSHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ----------EEE--------------------------ecccCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444 43333448999999999999999999999999999999999
Q ss_pred HHHHhhccccCCccCCCCCCCc
Q 046789 309 QVAAAGCRALGARTSLPHRTDP 330 (336)
Q Consensus 309 ~~Aa~~~~~~g~~~~~p~~~e~ 330 (336)
++|+.+|++.|+ .+|++.++
T Consensus 326 ~~aa~~v~~~G~--~~p~~~~~ 345 (347)
T 3otx_A 326 YTAQEVIQRDGC--SFPEKPSF 345 (347)
T ss_dssp HHHHHHHTCC------CCSCSC
T ss_pred HHHHHHHcccCC--CCCCCCCC
Confidence 999999999996 45877653
No 28
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=100.00 E-value=3.4e-38 Score=290.56 Aligned_cols=268 Identities=19% Similarity=0.278 Sum_probs=215.3
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.+|.+ .++++++ ..+||++.|+|.++++||.++.++|.+|+| +|+.+++.|++.||+++++...+ +|+.++
T Consensus 18 ~v~~~-~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i~~~l~~~gv~~~~v~~~~--~t~~~~ 93 (309)
T 3umo_A 18 ITPQI-YPEGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFPAGGA-TGEHLVSLLADENVPVATVEAKD--WTRQNL 93 (309)
T ss_dssp EESCC-CSSSEEECCCCEEEEESHHHHHHHHHHHTTCCEEEEEEECHH-HHHHHHHHHHHTTCCEEEEECSS--CCCCCE
T ss_pred EcCcc-cCCCeEEeceeeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHHHHHHHHcCCceEEEEecC--CCeeEE
Confidence 35677 6777766 899999999999999999999999999998 99999999999999999987643 466666
Q ss_pred EEEcCCCCeeEEEecCCCCCCCCcccch-hhHhhhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCCcchH
Q 046789 78 VIVDNQMKTRTCIHTPGDPPMIPDDLSE-STIFSALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTERQRE 151 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~e~~~~-~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~~~~~ 151 (336)
.+++..++.++.+..++. .+++++++. ....+.+..++++|++++.+ +.+.++++.++++++++++|+.. +
T Consensus 94 ~~~~~~~g~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~--~ 170 (309)
T 3umo_A 94 HVHVEASGEQYRFVMPGA-ALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSG--E 170 (309)
T ss_dssp EEEETTTCCEEEEECCCC-CCCHHHHHHHHHHHTTSCTTCEEEEESCCCTTCCHHHHHHHHHHHHHTTCEEEEECCH--H
T ss_pred EEEECCCCcEEEEEcCCC-CCCHHHHHHHHHHHHhcCCCCEEEEEccCCCCCCHHHHHHHHHHHHhcCCEEEEECCc--H
Confidence 656554456777777763 467666643 01112246788999998753 67788999999999999999953 4
Q ss_pred hHHHhhhc--CcEEecCcccchhhcCCC----ChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhH
Q 046789 152 RIDEFLKL--ASYAVCSAKFPQVWTEAP----SVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDS 225 (336)
Q Consensus 152 ~~~~~l~~--~dil~~n~~e~~~l~~~~----~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~ 225 (336)
.+..+++. +|++++|++|+..+++.. ...+.+++.+......+.+++|+|++|+++++.++..
T Consensus 171 ~l~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~~vvvt~G~~G~~~~~~~~~~----------- 239 (309)
T 3umo_A 171 ALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCI----------- 239 (309)
T ss_dssp HHHHHTSSCCBSEECCBHHHHHHHHTSCCCSTTHHHHHHHHHHHTTSBSCEEEECGGGCEEEECSSCEE-----------
T ss_pred HHHHHhccCCCeEEEeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCcccEEEEECCcEE-----------
Confidence 56778877 599999999999998754 2345556666665334899999999999998765432
Q ss_pred HHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHH
Q 046789 226 LLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLP 305 (336)
Q Consensus 226 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~ 305 (336)
++| + ++.+++|||||||+|.|||+++|++|+++++|++
T Consensus 240 -------------~~~--------------------------~---~~v~vvdttGAGD~f~a~~~~~l~~g~~~~~a~~ 277 (309)
T 3umo_A 240 -------------QVV--------------------------P---PPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVR 277 (309)
T ss_dssp -------------EEC--------------------------C---CSCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred -------------EEe--------------------------C---CCcCCCCCcChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 444 4 5678999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCccCCCCCCCccc
Q 046789 306 FAAQVAAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 306 ~a~~~Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
+|+++|+.+|++.|+. +|+++|++.
T Consensus 278 ~A~~~aa~~v~~~G~~--~~~~~ev~~ 302 (309)
T 3umo_A 278 FGVAAGSAATLNQGTR--LCSHDDTQK 302 (309)
T ss_dssp HHHHHHHHHTTSSTTC--CCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCC--CCCHHHHHH
Confidence 9999999999999985 699998864
No 29
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Probab=100.00 E-value=1.1e-37 Score=287.70 Aligned_cols=261 Identities=22% Similarity=0.310 Sum_probs=208.4
Q ss_pred CCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 4 DPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 4 ~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
++.+|.+++.++ ..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.+++
T Consensus 34 ~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~ig~vG~D~~G~~l~~~L~~~GV~~~~v~~~~~~~T~~~~~ 113 (312)
T 2hlz_A 34 VDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 113 (312)
T ss_dssp ESSCCCTTCEEECSEEEEEEESHHHHHHHHHHHHTCCEEEEEEECSSHHHHHHHHHHHHTTCBCTTEEECSSCCCCEEEE
T ss_pred cccCCCccceeecccceeccCccHHHHHHHHHHcCCceEEEEEecCchHHHHHHHHHHHcCCCCccceeccCCCCCeEEE
Confidence 466787777654 789999999999999999999999999999999999999999999999987765667888888
Q ss_pred EEcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhC--------CCcEEEeCCcc
Q 046789 79 IVDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARK--------NIPILIDTERQ 149 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~--------~~~v~~d~~~~ 149 (336)
+++...+.|++++..++ ..+++++++. ..++.++++|++++.++...++++.+++. ++++++|+...
T Consensus 114 ~v~~~~g~r~~~~~~~~~~~~~~~~~~~----~~l~~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~d~~~~ 189 (312)
T 2hlz_A 114 IINEASGSRTILYYDRSLPDVSATDFEK----VDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKP 189 (312)
T ss_dssp EEETTTCCEEEEEECCCCCCCCHHHHHT----SCGGGEEEEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCEEEEEECSC
T ss_pred EEECCCCceEEEecCCccccCCHHHhhH----hhhccCCEEEEeccCHHHHHHHHHHHHHhcccccCCCCeEEEEEcccc
Confidence 77642334555555443 4666665543 24688999999999888878888887776 67899999766
Q ss_pred hHhHHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCC-cEEEEeecCCceEEEeeccCCCCchhhhhhhHHHH
Q 046789 150 RERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNL-RFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLE 228 (336)
Q Consensus 150 ~~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~-~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~ 228 (336)
.+.+..+++++|++++|++|+..+ +..+ .+++.+.+...... +.||+|+|++|++++..+...
T Consensus 190 ~~~~~~~l~~~dil~~n~~ea~~l-g~~~-~~~~~~~l~~~~~~g~~vvvt~G~~G~~~~~~~~~~-------------- 253 (312)
T 2hlz_A 190 REELFQLFGYGDVVFVSKDVAKHL-GFQS-AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKL-------------- 253 (312)
T ss_dssp CGGGGGGGGSSSEEEECHHHHHHT-TCCS-HHHHHHHHGGGSCTTCEEEEECGGGCEEEECTTCCE--------------
T ss_pred hHHHHHHHhcCCEEEEcHHHHHHc-CCCC-HHHHHHHHHHhcCCCCEEEEEecccCeEEEccCCCE--------------
Confidence 677788999999999999999876 5443 44455555443233 899999999999887643221
Q ss_pred HHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHH
Q 046789 229 QLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAA 308 (336)
Q Consensus 229 ~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~ 308 (336)
.++| ++ +..+++|||||||+|.|||+++|++|+++++|+++|+
T Consensus 254 ---------~~~~--------------------------~~--~~~~vvdt~GAGDaf~a~~~~~l~~g~~~~~a~~~a~ 296 (312)
T 2hlz_A 254 ---------LHSD--------------------------AF--PPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGC 296 (312)
T ss_dssp ---------EEEC--------------------------CC--CCSSCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ---------EECC--------------------------CC--CCCCcccCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1333 31 3467999999999999999999999999999999999
Q ss_pred HHHHhhccccCCc
Q 046789 309 QVAAAGCRALGAR 321 (336)
Q Consensus 309 ~~Aa~~~~~~g~~ 321 (336)
++|+.+|++.|+.
T Consensus 297 ~~aa~~v~~~G~~ 309 (312)
T 2hlz_A 297 QVAGKKCGLQGFD 309 (312)
T ss_dssp HHHHHHHTSSSSG
T ss_pred HHHHHHHhhcCcc
Confidence 9999999999864
No 30
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A*
Probab=100.00 E-value=3.8e-38 Score=292.58 Aligned_cols=260 Identities=20% Similarity=0.295 Sum_probs=211.5
Q ss_pred CCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecC-ChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 5 PLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIAD-DPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 5 ~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~-D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
+.+|.+++.+. ..+||++.|+|.++++||.++.++|.+|+ | +|+ +++.|++.||+++++.+.++.+|+.+++
T Consensus 28 ~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~~D-~g~-i~~~L~~~gVd~~~v~~~~~~~T~~~~v 105 (326)
T 3b1n_A 28 DQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVD-AQP-YLDRMDALGLSREYVRVLPDTYSAQAMI 105 (326)
T ss_dssp TSSSSCEEEEECCSCCCEEECHHHHHHHHHHHTTCCEEEEEEEETTT-CHH-HHHHHHHHTCEEEEEEEETTCCCEEEEE
T ss_pred cccCCCCcceecccceeccCCHHHHHHHHHHHcCCCeeEEEEECCcC-HHH-HHHHHHHcCCcccceEEcCCCCceEEEE
Confidence 67777766543 68999999999999999999999999999 8 888 9999999999999998877788999999
Q ss_pred EEcCCCCeeEEEecCCCC-CCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCc-----chHh
Q 046789 79 IVDNQMKTRTCIHTPGDP-PMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTER-----QRER 152 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~-----~~~~ 152 (336)
+++.+|.+.+.++ ++.. .+.++++.. .+.++++|+++..++.+.++++.+++.++++++|+.. ..+.
T Consensus 106 ~~~~~g~~~~~~~-~ga~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~ 178 (326)
T 3b1n_A 106 TTDLDNNQITAFH-PGAMMQSHVNHAGE------AKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGAT 178 (326)
T ss_dssp EECTTCCCEEEEE-CGGGGGGGGSCGGG------CCSCSEEEECSCCHHHHHHHHHHHHHHTCCEEECCGGGGGGCCHHH
T ss_pred EECCCCceEEEEe-cChhhhcChhhccc------ccCCCEEEECCccHHHHHHHHHHHHHCCCEEEEeCchhhhhccHHH
Confidence 9987654444444 4432 444454443 2789999999999998999999999999999999952 2345
Q ss_pred HHHhhhcCcEEecCcccchhhcCCCC-hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHh
Q 046789 153 IDEFLKLASYAVCSAKFPQVWTEAPS-VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLK 231 (336)
Q Consensus 153 ~~~~l~~~dil~~n~~e~~~l~~~~~-~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (336)
+..+++++|++++|++|+..+++... ..+. +.. .++.||+|+|++|++++..+...
T Consensus 179 ~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~----l~~--~~~~vvvT~G~~Ga~~~~~~~~~----------------- 235 (326)
T 3b1n_A 179 LRRSIELATYIAVNDYEAKLVCDKTGWSEDE----IAS--RVQALIITRGEHGATIRHRDGTE----------------- 235 (326)
T ss_dssp HHHHHHHCSEEEEEHHHHHHHHHHHCCCHHH----HHT--TSSEEEEECGGGCEEEEETTEEE-----------------
T ss_pred HHHHHHhCCEEecCHHHHHHHhCCCCCCHHH----HHh--cCCEEEEecCCCceEEEECCcEE-----------------
Confidence 67889999999999999998875321 1222 223 47899999999999988654322
Q ss_pred hhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCC-ccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHH
Q 046789 232 QRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSE-LVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQV 310 (336)
Q Consensus 232 ~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~ 310 (336)
++| + ++++ ++|||||||+|.|||+++|++|+++++|+++|+++
T Consensus 236 -------~~~--------------------------~---~~v~~vvDttGAGDaF~ag~l~~l~~g~~~~~a~~~A~~~ 279 (326)
T 3b1n_A 236 -------QIP--------------------------A---VRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLM 279 (326)
T ss_dssp -------EEC--------------------------C---CCCSCCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred -------EeC--------------------------C---CCCCCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 333 4 4454 78999999999999999999999999999999999
Q ss_pred HHhhccccCCccCCCCCCCccc
Q 046789 311 AAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 311 Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
|+.+|++.|+...+|+++|++.
T Consensus 280 aa~~v~~~G~~~~~~~~~ev~~ 301 (326)
T 3b1n_A 280 GALKIAHQGPQTYAPTRAEIDA 301 (326)
T ss_dssp HHHHHTSSSTTCCCCCHHHHHH
T ss_pred HHHHHcCCCCCCCCCCHHHHHH
Confidence 9999999999888899988753
No 31
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=1.1e-37 Score=290.18 Aligned_cols=266 Identities=16% Similarity=0.155 Sum_probs=211.4
Q ss_pred CCCCCCCCCce--------EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcC--CcccceEEeCCCCc
Q 046789 4 DPLPPLPENRI--------VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADG--VDTSFLVVSKEGNS 73 (336)
Q Consensus 4 ~~~~p~~~~~~--------~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~g--v~~~~i~~~~~~~t 73 (336)
++. |.+++++ +..+||++.|+|.++++||.++.++|.+|+| +|+.+++.|++.| |+++++...+ .|
T Consensus 29 ~~~-~~~g~~~~~s~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~d-~G~~i~~~L~~~g~~V~~~~v~~~~--~t 104 (331)
T 2ajr_A 29 IED-FQVNRLYRINDLSKTQMSPGGKGINVSIALSKLGVPSVATGFVGGY-MGKILVEELRKISKLITTNFVYVEG--ET 104 (331)
T ss_dssp CTT-CCSSCEEECCSGGGEEEEEESHHHHHHHHHHHTTCCEEEEEEEEHH-HHHHHHHHHHHHCTTEEEEEEEESS--CC
T ss_pred cCC-ccCCceEEeccccceEEecCcHHHHHHHHHHHcCCCeEEEEEecCc-hHHHHHHHHHHcCCccceEEEEcCC--CC
Confidence 555 6677644 3689999999999999999999999999997 9999999999999 9999987643 37
Q ss_pred cEEEEEEcCCCCeeEEEecCCCCCCCCcccch--hhHhhhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeC
Q 046789 74 PFTYVIVDNQMKTRTCIHTPGDPPMIPDDLSE--STIFSALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDT 146 (336)
Q Consensus 74 ~~~~~~~~~~g~~~~~~~~~~~~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~ 146 (336)
+.++++++.+|.+++.+..++. .+++++++. ..+.+.++.++++|++++++ +.+..+++.++++++++++|+
T Consensus 105 ~~~~~~v~~~g~~~~~~~~~g~-~l~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 183 (331)
T 2ajr_A 105 RENIEIIDEKNKTITAINFPGP-DVTDMDVNHFLRRYKMTLSKVDCVVISGSIPPGVNEGICNELVRLARERGVFVFVEQ 183 (331)
T ss_dssp EEEEEEEETTTTEEEEEECCCC-CCCHHHHHHHHHHHHHHHTTCSEEEEESCCCTTSCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred eEEEEEEeCCCceEEEEeCCCC-CCCHHHHHHHHHHHHHhcccCCEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 7788888766654477777663 466665543 11234678999999998765 477789999999999999999
Q ss_pred CcchHhHHHhhhc---CcEEecCccc-chhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCch
Q 046789 147 ERQRERIDEFLKL---ASYAVCSAKF-PQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPEL 218 (336)
Q Consensus 147 ~~~~~~~~~~l~~---~dil~~n~~e-~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~ 218 (336)
.. +.+..++++ +|++++|++| +..+++... ..+.+++.+... ++.+|+|+|++|+++++.+...
T Consensus 184 ~~--~~~~~~l~~~~~~dil~~N~~E~~~~l~g~~~~~~~~~~~~~~~l~~~--~~~vvvT~G~~Ga~~~~~~~~~---- 255 (331)
T 2ajr_A 184 TP--RLLERIYEGPEFPNVVKPDLRGNHASFLGVDLKTFDDYVKLAEKLAEK--SQVSVVSYEVKNDIVATREGVW---- 255 (331)
T ss_dssp CH--HHHHHHHHSSCCCSEECCCCTTCCSCBTTBCCCSHHHHHHHHHHHHHH--SSEEEEEETTTEEEEECSSCEE----
T ss_pred Ch--HHHHHHHhcCCCCeEEEeCccchHHHHhCCCCCCHHHHHHHHHHHHHh--cCEEEEeecCCceEEEeCCcEE----
Confidence 63 346667764 8999999999 998887542 223445555553 7899999999999987654321
Q ss_pred hhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHH-hC
Q 046789 219 EEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALC-AN 297 (336)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~-~g 297 (336)
+ .+. .++++++|||||||+|.|||+++|+ +|
T Consensus 256 --------------------~--------------------------~~~--~~~v~vvDttGAGDaF~ag~l~~l~~~g 287 (331)
T 2ajr_A 256 --------------------L--------------------------IRS--KEEIDTSHLLGAGDAYVAGMVYYFIKHG 287 (331)
T ss_dssp --------------------E--------------------------EEE--SSCCCGGGCTTHHHHHHHHHHHHHHHHC
T ss_pred --------------------E--------------------------Eec--CCcccccCCCchHHHHHHHHHHHHHHcC
Confidence 1 110 2567899999999999999999999 99
Q ss_pred CChhhHHHHHHHHHHhhccccCCccCCCCCCCccc
Q 046789 298 MSPEKMLPFAAQVAAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 298 ~~l~~al~~a~~~Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
+++++|+++|+++|+.+|++.|+. +|+++|+++
T Consensus 288 ~~~~~al~~A~a~aa~~v~~~G~~--~~~~~ev~~ 320 (331)
T 2ajr_A 288 ANFLEMAKFGFASALAATRRKEKY--MPDLEAIKK 320 (331)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSSCC--CCCHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCcCcC--CCCHHHHHH
Confidence 999999999999999999999984 699888753
No 32
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A*
Probab=100.00 E-value=7.4e-39 Score=298.96 Aligned_cols=260 Identities=26% Similarity=0.326 Sum_probs=205.8
Q ss_pred CCceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEE
Q 046789 11 ENRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCI 90 (336)
Q Consensus 11 ~~~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~ 90 (336)
....+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++.+.++.+|+.+++.++.+|.+.+.+
T Consensus 42 ~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~T~~~~v~~~~~g~r~~~~ 121 (339)
T 1tyy_A 42 QNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSFTY 121 (339)
T ss_dssp SSEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHHHHHHHHTTTEECTTEEECTTSCCCEEEEC-------CEEE
T ss_pred CCceEEcCCCHHHHHHHHHHHcCCCeEEEEeeCCCHHHHHHHHHHHHcCCCchheEecCCCCCeEEEEEEcCCCCeEEEE
Confidence 34556789999999999999999999999999999999999999999999999998877778998888887666555555
Q ss_pred ecC-CCC-CCCCcccchhhHhhhccCCcEEEEcCCc------HHHHHHHHHHHHhCCCcEEEeCCc----------chHh
Q 046789 91 HTP-GDP-PMIPDDLSESTIFSALDGARILYLDGRL------PDTAIIVAQEAARKNIPILIDTER----------QRER 152 (336)
Q Consensus 91 ~~~-~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~------~~~~~~~~~~a~~~~~~v~~d~~~----------~~~~ 152 (336)
+.. +++ .+++++ .+.++.++++|++++. .+.+.++++.++++++++++|+.. ..+.
T Consensus 122 ~~~~~a~~~l~~~~------~~~l~~~~~v~~~~~~l~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~ 195 (339)
T 1tyy_A 122 LVHPGADTYVSPQD------LPPFRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLFDVNLRSKMWGNTDEIPEL 195 (339)
T ss_dssp CCSSCGGGGCCGGG------CCCCCTTCEEEEEHHHHSSHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGCSCGGGHHHH
T ss_pred ecCCChhhhCCcch------hhHhccCCEEEEcchhhcCcccHHHHHHHHHHHHHcCCEEEEeCCCCccccCCHHHHHHH
Confidence 443 322 343331 2357889999997652 246668899999999999999941 1345
Q ss_pred HHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhh
Q 046789 153 IDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQ 232 (336)
Q Consensus 153 ~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (336)
+.++++++|++++|++|+..+++..+..+ +++.+.. .+++.||+|+|++|+++++.+...
T Consensus 196 ~~~ll~~~dil~~N~~Ea~~l~g~~~~~~-~~~~l~~-~g~~~VvvT~G~~G~~~~~~~~~~------------------ 255 (339)
T 1tyy_A 196 IARSAALASICKVSADELCQLSGASHWQD-ARYYLRD-LGCDTTIISLGADGALLITAEGEF------------------ 255 (339)
T ss_dssp HHHHHHHCSEEEEEHHHHHHHHCCSSGGG-GSSTTGG-GTCSCEEEECGGGCEEEESSSCEE------------------
T ss_pred HHHHHhhCCEEecCHHHHHHHhCCCCHHH-HHHHHHH-cCCCEEEEEECCCceEEEeCCceE------------------
Confidence 67788999999999999999988765433 3333333 388999999999999988654322
Q ss_pred hcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhC-----CChhhHHHHH
Q 046789 233 RKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCAN-----MSPEKMLPFA 307 (336)
Q Consensus 233 ~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g-----~~l~~al~~a 307 (336)
++| + ++++++|||||||+|.|||+++|++| +++++|+++|
T Consensus 256 ------~~~--------------------------~---~~v~vvDttGAGDaF~ag~~~~l~~g~~~~~~~l~~a~~~A 300 (339)
T 1tyy_A 256 ------HFP--------------------------A---PRVDVVDTTGAGDAFVGGLLFTLSRANCWDHALLAEAISNA 300 (339)
T ss_dssp ------EEC--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred ------EcC--------------------------C---CCCCcCCCCCchHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence 344 4 56789999999999999999999997 8999999999
Q ss_pred HHHHHhhccccCCccCCCCCCCcc
Q 046789 308 AQVAAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 308 ~~~Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
+++|+.+|++.|+.+++|+++|++
T Consensus 301 ~a~aa~~v~~~G~~~~~p~~~ev~ 324 (339)
T 1tyy_A 301 NACGAMAVTAKGAMTALPFPDQLN 324 (339)
T ss_dssp HHHHHHGGGSSSTTTTCCCHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCHHHHH
Confidence 999999999999988889998875
No 33
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=8.5e-38 Score=292.99 Aligned_cols=269 Identities=17% Similarity=0.229 Sum_probs=209.7
Q ss_pred CCCCCCCC-------ceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 5 PLPPLPEN-------RIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 5 ~~~p~~~~-------~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
+.+|.+++ .....+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++.. .+.+|+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~i~~~L~~~gv~~~~v~~-~~~~t~~~~ 101 (351)
T 2afb_A 23 LRLSPPDHKRIFQTDSFDVTYGGAEANVAAFLAQMGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDYIAR-GGNRIGIYF 101 (351)
T ss_dssp EEEECSTTCCGGGCSEEEEEEECHHHHHHHHHHHTTSEEEEEEEECSSHHHHHHHHHHHHTTCBCTTEEE-CSSCCCEEE
T ss_pred heecCCCCccccccceeeEecCChHHHHHHHHHHcCCCeEEEEEeCCCHHHHHHHHHHHHcCCcceeEEE-CCCcceEEE
Confidence 44555554 2337899999999999999999999999999999999999999999999999876 566788877
Q ss_pred EEEcCCCCeeEEEec-CCC--CCCCCcccchhhHhhhccCCcEEEEcCCcH-------HHHHHHHHHHHhCCCcEEEeCC
Q 046789 78 VIVDNQMKTRTCIHT-PGD--PPMIPDDLSESTIFSALDGARILYLDGRLP-------DTAIIVAQEAARKNIPILIDTE 147 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~-~~~--~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-------~~~~~~~~~a~~~~~~v~~d~~ 147 (336)
+..+.++....+.+. .+. ..++++++.. ...++.++++|++++.+ +.+.++++.+++.++++++|+.
T Consensus 102 v~~~~~~r~~~v~~~~~~~a~~~~~~~~~~~---~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~ 178 (351)
T 2afb_A 102 LEIGASQRPSKVVYDRAHSAISEAKREDFDW---EKILDGARWFHFSGITPPLGKELPLILEDALKVANEKGVTVSCDLN 178 (351)
T ss_dssp EECCBTTBCCEEEEECTTCTTTTCCGGGCCH---HHHTTTEEEEEEETTSGGGSTTHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred EEecCCCCcceEEEeCCCChhhhCChhhCCH---HHhhcCCCEEEEeCcccccChhHHHHHHHHHHHHHHcCCEEEEeCC
Confidence 776643222233333 221 3566666653 24578999999998754 5667889999999999999995
Q ss_pred c---------chHhHHHhhhcCcEEecCcccchhhcCCCCh-------------HHHHHHHHHcCCCCcEEEEeecCCce
Q 046789 148 R---------QRERIDEFLKLASYAVCSAKFPQVWTEAPSV-------------PSALVSMLLRLPNLRFAIVTLGEDGC 205 (336)
Q Consensus 148 ~---------~~~~~~~~l~~~dil~~n~~e~~~l~~~~~~-------------~~~~~~~l~~~~~~~~vvvt~G~~G~ 205 (336)
. ..+.+..+++++|++++|++|+..+++.... .+.+++.+....+++.||+|+|++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~vvvT~G~~G~ 258 (351)
T 2afb_A 179 YRARLWTKEEAQKVMIPFMEYVDVLIANEEDIEKVLGISVEGLDLKTGKLNREAYAKIAEEVTRKYNFKTVGITLRESIS 258 (351)
T ss_dssp CCTTTCCHHHHHHHHHHHGGGCSEEEECHHHHHHHHCCCCSCC-------CHHHHHHHHHHHHHHHCCSEEEEEEEECSC
T ss_pred CchhcCChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCcccccccccccchhhHHHHHHHHHHHcCCCEEEEEeCCcCc
Confidence 2 2355678899999999999999999886531 23344444332388999999999975
Q ss_pred --------EEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCcc
Q 046789 206 --------IMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELV 277 (336)
Q Consensus 206 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vv 277 (336)
+++..+... ++| + ++++++
T Consensus 259 ~~~~~~g~~~~~~~~~~------------------------~~~--------------------------~---~~v~vv 285 (351)
T 2afb_A 259 ATVNYWSVMVFENGQPH------------------------FSN--------------------------R---YEIHIV 285 (351)
T ss_dssp SSEEEEEEEEEETTEEE------------------------ECC--------------------------C---EEEECS
T ss_pred cccccceeEEEeCCcEE------------------------EcC--------------------------C---CCCccC
Confidence 555433221 333 4 456789
Q ss_pred ccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccCCccCCCCCCCcc
Q 046789 278 DTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 278 d~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
|||||||+|.|||+++|++|+++++|+++|+++|+.+|++.|+.. +|++++++
T Consensus 286 dttGAGDaF~ag~~~~l~~g~~l~~a~~~A~~~aa~~v~~~G~~~-~~~~~ev~ 338 (351)
T 2afb_A 286 DRVGAGDSFAGALIYGSLMGFDSQKKAEFAAAASCLKHTIPGDFV-VLSIEEIE 338 (351)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTSSSSSC-CCCHHHHH
T ss_pred CCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCC-CCCHHHHH
Confidence 999999999999999999999999999999999999999999874 79988875
No 34
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Probab=100.00 E-value=1.6e-37 Score=288.92 Aligned_cols=264 Identities=15% Similarity=0.189 Sum_probs=212.6
Q ss_pred CCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 4 DPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 4 ~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
+|.+ .+++..+ ..+||++.|+|.++++||.++.++|.+|+ ++|+.+++.|++.||+++++...+ .|+.++.
T Consensus 37 ~~~~-~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~-~~G~~l~~~L~~~gV~~~~v~~~~--~t~~~~~ 112 (330)
T 2jg1_A 37 LTAL-KLDDVNRVQEVSKTAGGKGLNVTRVLAQVGEPVLASGFIGG-ELGQFIAKKLDHADIKHAFYNIKG--ETRNCIA 112 (330)
T ss_dssp ESCC-CTTSEEEESCCEEEEECHHHHHHHHHHHHTCCEEEEEEEEH-HHHHHHHHHHHHTTCEECCEEESS--CCEEEEE
T ss_pred cCCc-cCCceEEeceEEEcCCchHHHHHHHHHHhCCCeEEEEEecc-hhHHHHHHHHHHCCCceeEEEccC--CCeeEEE
Confidence 4454 5666554 78999999999999999999999999996 799999999999999999987643 3777888
Q ss_pred EEcCCCCeeEEEecCCCCCCCCcccch--hhHhhhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCCcchH
Q 046789 79 IVDNQMKTRTCIHTPGDPPMIPDDLSE--STIFSALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTERQRE 151 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~~~~~ 151 (336)
+++.+ .++.+..++ ..+++++++. ..+.+.++.++++|++++.+ +.+..+++.++++++++++|+.. .
T Consensus 113 ~v~~~--~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~--~ 187 (330)
T 2jg1_A 113 ILHEG--QQTEILEQG-PEIDNQEAAGFIKHFEQMMEKVEAVAISGSLPKGLNQDYYAQIIERCQNKGVPVILDCSG--A 187 (330)
T ss_dssp EEETT--EEEEEEECC-CBCCHHHHHHHHHHHHHHGGGCSEEEEESCCCBTSCTTHHHHHHHHHHTTTCCEEEECCH--H
T ss_pred EEeCC--CcEEEECCC-CCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCc--H
Confidence 88754 666676666 3566665543 12234578999999988765 57778999999999999999963 3
Q ss_pred hHHHhhh---cCcEEecCcccchhhcCCCC-----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhh
Q 046789 152 RIDEFLK---LASYAVCSAKFPQVWTEAPS-----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDV 223 (336)
Q Consensus 152 ~~~~~l~---~~dil~~n~~e~~~l~~~~~-----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~ 223 (336)
.+.++++ ++|++++|++|+..+++... ..+++++.+... +++.||+|+|++|+++++.+...
T Consensus 188 ~l~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~l~~~-g~~~VvvT~G~~Ga~~~~~~~~~--------- 257 (330)
T 2jg1_A 188 TLQTVLENPYKPTVIKPNISELYQLLNQPLDESLESLKQAVSQPLFE-GIEWIIVSLGAQGAFAKHNHTFY--------- 257 (330)
T ss_dssp HHHHHHTSSSCCSEECCBHHHHHHHTTSCCCCCHHHHHHHHHSGGGT-TCSEEEEECGGGCEEEEETTEEE---------
T ss_pred HHHHHHhccCCceEEEeCHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-CCCEEEEeecCCceEEEeCCCEE---------
Confidence 5667776 89999999999999987642 233444545453 89999999999999988654332
Q ss_pred hHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhH
Q 046789 224 DSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKM 303 (336)
Q Consensus 224 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~a 303 (336)
++| + ++++++|||||||+|.|||+++|++|+++++|
T Consensus 258 ---------------~~~--------------------------~---~~v~vvDttGAGDaF~ag~~~~l~~g~~l~~a 293 (330)
T 2jg1_A 258 ---------------RVN--------------------------I---PTISVLNPVGSGDSTVAGITSAILNHENDHDL 293 (330)
T ss_dssp ---------------EEE--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ---------------EEe--------------------------C---CCccccCCCcHHHHHHHHHHHHHHcCCCHHHH
Confidence 333 4 56789999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCccCCCCCCCccc
Q 046789 304 LPFAAQVAAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 304 l~~a~~~Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
+++|+++|+.+|++.|+. +|+++|+++
T Consensus 294 l~~A~a~aa~~v~~~G~~--~~~~~ev~~ 320 (330)
T 2jg1_A 294 LKKANTLGMLNAQEAQTG--YVNLNNYDD 320 (330)
T ss_dssp HHHHHHHHHHHHTSSSSS--CCCGGGHHH
T ss_pred HHHHHHHHHHHhcCcCCC--CCCHHHHHH
Confidence 999999999999999984 699998763
No 35
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Probab=100.00 E-value=2.9e-38 Score=294.37 Aligned_cols=265 Identities=18% Similarity=0.245 Sum_probs=213.1
Q ss_pred CCCCCCCCc-----eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEE
Q 046789 5 PLPPLPENR-----IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVI 79 (336)
Q Consensus 5 ~~~p~~~~~-----~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~ 79 (336)
+.+|.+++. .+..+||++.|+|.++++||.++.++|.+|+| +|+ +++.|++.||+++++.+.++.+|+.++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D-~g~-i~~~L~~~gV~~~~v~~~~~~~T~~~~~~ 115 (334)
T 2pkf_A 38 EHLHKVSLSFLVDDLVMHRGGVAGNMAFAIGVLGGEVALVGAAGAD-FAD-YRDWLKARGVNCDHVLISETAHTARFTCT 115 (334)
T ss_dssp SCGGGCCCCCCCSEEEEEEECHHHHHHHHHHHTTCEEEEECEECGG-GHH-HHHHHHTTTEECTTCEECSSCCCEEEEEE
T ss_pred hhccccccccccccceecCCChHHHHHHHHHHcCCCeEEEEEEeCc-hHH-HHHHHHHCCCceeeeEecCCCCceEEEEE
Confidence 566766643 45889999999999999999999999999999 899 99999999999999987777789999999
Q ss_pred EcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCc-----chHhH
Q 046789 80 VDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTER-----QRERI 153 (336)
Q Consensus 80 ~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~-----~~~~~ 153 (336)
++.+|.+.+.++ .++ ..+.++++.. ....++.++++|+++..++.+.++++.++++++++++|+.. ..+.+
T Consensus 116 ~~~~g~~~~~~~-~ga~~~~~~~~~~~--~~~~l~~~~~v~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~l 192 (334)
T 2pkf_A 116 TDVDMAQIASFY-PGAMSEARNIKLAD--VVSAIGKPELVIIGANDPEAMFLHTEECRKLGLAFAADPSQQLARLSGEEI 192 (334)
T ss_dssp ECTTCCEEEEEE-CGGGGGGGGCCHHH--HHHHHCSCSEEEEESCCHHHHHHHHHHHHHHTCCEEEECGGGGGTSCHHHH
T ss_pred EcCCCCEEEEEC-CchhhhCCHhhcCh--hhhhhcCCCEEEEcCCChHHHHHHHHHHHhcCCeEEEeccchhhhhhHHHH
Confidence 887654444444 442 2455555544 11345899999999999998999999999999999999952 23456
Q ss_pred HHhhhcCcEEecCcccchhhcCCCC-hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhh
Q 046789 154 DEFLKLASYAVCSAKFPQVWTEAPS-VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQ 232 (336)
Q Consensus 154 ~~~l~~~dil~~n~~e~~~l~~~~~-~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (336)
..+++++|++++|++|+..+.+... ..+. +.. .++.||+|+|++|++++.++...
T Consensus 193 ~~~l~~~dil~~N~~E~~~l~g~~~~~~~~----l~~--~~~~vvvt~G~~G~~~~~~~~~~------------------ 248 (334)
T 2pkf_A 193 RRLVNGAAYLFTNDYEWDLLLSKTGWSEAD----VMA--QIDLRVTTLGPKGVDLVEPDGTT------------------ 248 (334)
T ss_dssp HTTTTTCSEEEEEHHHHHHHHHHHCCCHHH----HHT--TCSCEEEECGGGCEEEECTTSCE------------------
T ss_pred HHHHhcCCEEecCHHHHHHHhccCCCCHHH----HHh--cCCEEEEEeCCCCeEEEeCCCcE------------------
Confidence 7789999999999999998875321 1221 333 37899999999999988654311
Q ss_pred hcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCC-ccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 046789 233 RKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSE-LVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVA 311 (336)
Q Consensus 233 ~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~A 311 (336)
.++| + ++++ ++|||||||+|.|||+++|++|+++++|+++|+++|
T Consensus 249 -----~~~~--------------------------~---~~v~~vvDttGAGDaF~a~~~~~l~~g~~~~~a~~~A~~~a 294 (334)
T 2pkf_A 249 -----IHVG--------------------------V---VPETSQTDPTGVGDAFRAGFLTGRSAGLGLERSAQLGSLVA 294 (334)
T ss_dssp -----EEEC--------------------------C---CCCSCCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred -----EEeC--------------------------C---cCCCCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1333 4 4554 789999999999999999999999999999999999
Q ss_pred HhhccccCCccCCCCCCCccc
Q 046789 312 AAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 312 a~~~~~~g~~~~~p~~~e~~~ 332 (336)
+.+|++.|+...+|+++|++.
T Consensus 295 a~~v~~~G~~~~~p~~~ev~~ 315 (334)
T 2pkf_A 295 VLVLESTGTQEWQWDYEAAAS 315 (334)
T ss_dssp HHHHTSSSSSCCCCCHHHHHH
T ss_pred HHHHhCCCCCcCCCCHHHHHH
Confidence 999999999888899988753
No 36
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Probab=100.00 E-value=8.8e-38 Score=288.03 Aligned_cols=255 Identities=18% Similarity=0.225 Sum_probs=207.9
Q ss_pred eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCC--eeEEEe
Q 046789 14 IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMK--TRTCIH 91 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~--~~~~~~ 91 (336)
.+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.+++.++.+|. +++.++
T Consensus 28 ~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~ 107 (311)
T 2dcn_A 28 FEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKSESIYY 107 (311)
T ss_dssp EEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHHHHHHHHTTCBCTTCEEETTSCCCEEEEEESCSSTTCEEEEEE
T ss_pred eeecCCChHHHHHHHHHHCCCceEEEEEeCCCHHHHHHHHHHHHcCCCcceEEEcCCCCceEEEEEECCCCCccceEEEe
Confidence 458999999999999999999999999999999999999999999999999987777789999998887665 555444
Q ss_pred c-CCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH-------HHHHHHHHHHHhCCCcEEEeCCc---------chHhH
Q 046789 92 T-PGD-PPMIPDDLSESTIFSALDGARILYLDGRLP-------DTAIIVAQEAARKNIPILIDTER---------QRERI 153 (336)
Q Consensus 92 ~-~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-------~~~~~~~~~a~~~~~~v~~d~~~---------~~~~~ 153 (336)
. .++ ..++++++.. ..+++++++|++++.+ +.+.++++.++++ ++|+.. ..+.+
T Consensus 108 ~~~~a~~~~~~~~~~~----~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~a~~~----~~D~~~~~~~~~~~~~~~~~ 179 (311)
T 2dcn_A 108 RKGSAGSKLSPEDVDE----EYVKSADLVHSSGITLAISSTAKEAVYKAFEIASNR----SFDTNIRLKLWSAEEAKREI 179 (311)
T ss_dssp CTTCTGGGCCGGGCCH----HHHTTCSEEEEEHHHHHSCHHHHHHHHHHHHHCSSE----EEECCCCTTTSCHHHHHHHH
T ss_pred cCcChhhhCChhhcCh----HHHcCCCEEEEeCcccccChHHHHHHHHHHHHHHHh----CcCccCchhhCChHHHHHHH
Confidence 3 232 3677777765 4578999999987654 3445666666554 889852 12456
Q ss_pred HHhhh--cCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHh
Q 046789 154 DEFLK--LASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLK 231 (336)
Q Consensus 154 ~~~l~--~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (336)
..+++ ++|++++|++|+..+++..+.. .+++.+.. . ++.+|+|+|++|++++..+...
T Consensus 180 ~~~l~~~~~dil~~N~~E~~~l~g~~~~~-~~~~~l~~-~-~~~vvvt~G~~G~~~~~~~~~~----------------- 239 (311)
T 2dcn_A 180 LKLLSKFHLKFLITDTDDSKIILGESDPD-KAAKAFSD-Y-AEIIVMKLGPKGAIVYYDGKKY----------------- 239 (311)
T ss_dssp HHHHHHCCEEEEEEEHHHHHHHHSCCCHH-HHHHHHTT-T-EEEEEEEEETTEEEEEETTEEE-----------------
T ss_pred HHHHhhcCCcEEECCHHHHHHHhCCCCHH-HHHHHHHH-h-CCEEEEEECCCCcEEEeCCcEE-----------------
Confidence 77889 9999999999999999875544 45555555 3 8899999999999988654322
Q ss_pred hhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 046789 232 QRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVA 311 (336)
Q Consensus 232 ~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~A 311 (336)
++| + ++++++|||||||+|.|||+++|++|+++++|+++|+++|
T Consensus 240 -------~~~--------------------------~---~~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~a~~~a 283 (311)
T 2dcn_A 240 -------YSS--------------------------G---YQVPVEDVTGAGDALGGTFLSLYYKGFEMEKALDYAIVAS 283 (311)
T ss_dssp -------EEE--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred -------EeC--------------------------C---ccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 334 4 5667999999999999999999999999999999999999
Q ss_pred HhhccccCCccCCCCCCCccc
Q 046789 312 AAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 312 a~~~~~~g~~~~~p~~~e~~~ 332 (336)
+.+|++.|+.+++|++++++.
T Consensus 284 a~~v~~~G~~~~~~~~~~v~~ 304 (311)
T 2dcn_A 284 TLNVMIRGDQENLPTTKDIET 304 (311)
T ss_dssp HHHTTSSSSSTTCCCHHHHHH
T ss_pred HHHhccCCCCCCCCCHHHHHH
Confidence 999999999888899988753
No 37
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Probab=100.00 E-value=2.7e-37 Score=286.44 Aligned_cols=263 Identities=16% Similarity=0.222 Sum_probs=212.3
Q ss_pred CCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 4 DPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 4 ~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
+|. |.+++..+ ..+||++.|+|.++++||.++.++|.+|+ ++|+.+++.|++.||+++++...+ .|+.++.
T Consensus 19 v~~-~~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~-~~G~~i~~~L~~~gV~~~~v~~~~--~t~~~~~ 94 (323)
T 2f02_A 19 LDH-LKLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLGG-FHGAFIANELKKANIPQAFTSIKE--ETRDSIA 94 (323)
T ss_dssp CSC-CCTTSEEEESCEEEEEESHHHHHHHHHHHHTCCEEEEEEEEH-HHHHHHHHHHHHTTCCBCCEEESS--CCEEEEE
T ss_pred cCC-cccCCEEEeceEEEcCCcHHHHHHHHHHHcCCCeEEEEEecc-chHHHHHHHHHHCCCceeEEEcCC--CCeeEEE
Confidence 555 67777655 78999999999999999999999999997 699999999999999999987643 3777777
Q ss_pred EEcCCCCeeEEEecCCCCCCCCcccch--hhHhhhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCCcchH
Q 046789 79 IVDNQMKTRTCIHTPGDPPMIPDDLSE--STIFSALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTERQRE 151 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~~~~~ 151 (336)
+++.+ +++.+..++ ..+++++++. +.+.+.++.+++++++++.+ +.+..+++.++++++++++|+.. .
T Consensus 95 ~~~~~--~~~~~~~~g-~~l~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~--~ 169 (323)
T 2f02_A 95 ILHEG--NQTEILEAG-PTVSPEEISNFLENFDQLIKQAEIVTISGSLAKGLPSDFYQELVQKAHAQEVKVLLDTSG--D 169 (323)
T ss_dssp EEETT--EEEEEEECC-CBCCHHHHHHHHHHHHHHHTTCSEEEEESCCCBTSCTTHHHHHHHHHHHTTCEEEEECCT--H
T ss_pred EEcCC--CeEEEECCC-CCCCHHHHHHHHHHHHHhccCCCEEEEECCCCCCCChHHHHHHHHHHHHCCCEEEEECCh--H
Confidence 77754 677777766 3566666543 12234578999999988764 57778999999999999999963 3
Q ss_pred hHHHhhh---cCcEEecCcccchhhcCCCC------hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhh
Q 046789 152 RIDEFLK---LASYAVCSAKFPQVWTEAPS------VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEID 222 (336)
Q Consensus 152 ~~~~~l~---~~dil~~n~~e~~~l~~~~~------~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~ 222 (336)
.+.++++ ++|++++|++|+..+++... ..+.+++.+... +++.+|+|+|++|+++++.+...
T Consensus 170 ~~~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~~l~~~-g~~~vvvt~G~~G~~~~~~~~~~-------- 240 (323)
T 2f02_A 170 SLRQVLQGPWKPYLIKPNLEELEGLLGQDFSENPLAAVQTALTKPMFA-GIEWIVISLGKDGAIAKHHDQFY-------- 240 (323)
T ss_dssp HHHHHHHSSCCCSEECCBHHHHHHHHTCCCCSSCHHHHHHHHTSGGGT-TCSEEEEECGGGCEEEEETTEEE--------
T ss_pred HHHHHHhccCCCeEEecCHHHHHHHhCCCCCCCcHHHHHHHHHHHHHc-CCCEEEEeecCCceEEEeCCCEE--------
Confidence 4556664 89999999999999987641 223344445443 89999999999999988654332
Q ss_pred hhHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhh
Q 046789 223 VDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEK 302 (336)
Q Consensus 223 ~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~ 302 (336)
++| + ++++++|||||||+|.|||+++|++|+++++
T Consensus 241 ----------------~~~--------------------------~---~~v~vvdttGAGDaF~a~~~~~l~~g~~~~~ 275 (323)
T 2f02_A 241 ----------------RVK--------------------------I---PTIQAKNPVGSGDATIAGLAYGLAKDAPAAE 275 (323)
T ss_dssp ----------------EEE--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHHTTCCHHH
T ss_pred ----------------EEc--------------------------C---CCccccCCccHHHHHHHHHHHHHHcCCCHHH
Confidence 333 4 5678999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCccCCCCCCCcc
Q 046789 303 MLPFAAQVAAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 303 al~~a~~~Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
|+++|+++|+.+|++.|+. +|+++|++
T Consensus 276 a~~~A~~~aa~~v~~~G~~--~~~~~ev~ 302 (323)
T 2f02_A 276 LLKWGMAAGMANAQERMTG--HVDVENVK 302 (323)
T ss_dssp HHHHHHHHHHHHHHSSSSS--CCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcC--CCCHHHHH
Confidence 9999999999999999984 68888875
No 38
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*
Probab=100.00 E-value=3.5e-37 Score=283.75 Aligned_cols=264 Identities=20% Similarity=0.292 Sum_probs=205.8
Q ss_pred CCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 4 DPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 4 ~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
++. |.+++..+ ..+||++.|+|.++++||.++.++|.+|+| +|+.+++.|++.||+++++...++ |+.++.
T Consensus 19 ~~~-~~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i~~~l~~~gv~~~~v~~~~~--t~~~~~ 94 (309)
T 3cqd_A 19 TPQ-IYPEGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFPAGGA-TGEHLVSLLADENVPVATVEAKDW--TRQNLH 94 (309)
T ss_dssp ESC-CCSSSEEECCCCEEEEESHHHHHHHHHHHTTCCEEEEEEECHH-HHHHHHHHHHHTTCCEEEEECSSC--CCCCEE
T ss_pred cCC-CcCCCeeeccceeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHHHHHHHHcCCCceeEEcCCC--CeeEEE
Confidence 455 56777665 789999999999999999999999999997 999999999999999999876433 666677
Q ss_pred E-EcCCCCeeEEEecCCCCCCCCcccch--hhHhhhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCCcch
Q 046789 79 I-VDNQMKTRTCIHTPGDPPMIPDDLSE--STIFSALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTERQR 150 (336)
Q Consensus 79 ~-~~~~g~~~~~~~~~~~~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~~~~ 150 (336)
+ ++.+| .++.+..++ ..+++++++. +.+.+.++. +++|++++.+ +.+..+++.++++++++++|+...
T Consensus 95 ~~~~~~g-~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~- 170 (309)
T 3cqd_A 95 VHVEASG-EQYRFVMPG-AALNEDEFRQLEEQVLEIESG-AILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGE- 170 (309)
T ss_dssp EEETTTC-CEEEEECCC-CCCCHHHHHHHHHHHHTSCTT-CEEEEESCCCTTCCHHHHHHHHHHHHTTTCEEEEECCHH-
T ss_pred EEEcCCC-CEEEEEcCC-CCCCHHHHHHHHHHHHHhhcC-CEEEEECCCCCCCCHHHHHHHHHHHHHcCCeEEEECChH-
Confidence 7 77655 467777766 3566665543 112345778 9999998764 577789999999999999999632
Q ss_pred HhHHHhh-hcC-cEEecCcccchhhcCCC----ChHHHHHHHHHcCCC-CcEEEEeecCCceEEEeeccCCCCchhhhhh
Q 046789 151 ERIDEFL-KLA-SYAVCSAKFPQVWTEAP----SVPSALVSMLLRLPN-LRFAIVTLGEDGCIMLERSVNESPELEEIDV 223 (336)
Q Consensus 151 ~~~~~~l-~~~-dil~~n~~e~~~l~~~~----~~~~~~~~~l~~~~~-~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~ 223 (336)
.+...+ +.+ |++++|++|+..+++.. ...+++++.+... + ++.+|+|+|++|+++++.+...
T Consensus 171 -~~~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~-g~~~~vvvt~G~~G~~~~~~~~~~--------- 239 (309)
T 3cqd_A 171 -ALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNS-GKAKRVVVSLGPQGALGVDSENCI--------- 239 (309)
T ss_dssp -HHHHHTTTCCBSEECCBHHHHHHHHTSCCCSTTHHHHHHHHHHHT-TSBSCEEEECGGGCEEEECSSCEE---------
T ss_pred -HHHHHHHhCCCEEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCCCEEEEEecCCceEEEECCceE---------
Confidence 244444 788 99999999999988753 2344455555554 7 8999999999999987654322
Q ss_pred hHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhH
Q 046789 224 DSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKM 303 (336)
Q Consensus 224 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~a 303 (336)
++| + ++++++|||||||+|.|||+++|++|+++++|
T Consensus 240 ---------------~~~--------------------------~---~~v~~vdttGAGDaf~a~~~~~l~~g~~~~~a 275 (309)
T 3cqd_A 240 ---------------QVV--------------------------P---PPVKSQSTVGAGDSMVGAMTLKLAENASLEEM 275 (309)
T ss_dssp ---------------EEC--------------------------C---CSCCCCCCTTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ---------------EEe--------------------------C---CccccCCCcCcHHHHHHHHHHHHHcCCCHHHH
Confidence 333 4 56789999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCccCCCCCCCccc
Q 046789 304 LPFAAQVAAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 304 l~~a~~~Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
+++|+++|+.+|++.|+. .|+++|++.
T Consensus 276 ~~~A~~~aa~~~~~~G~~--~~~~~~v~~ 302 (309)
T 3cqd_A 276 VRFGVAAGSAATLNQGTR--LCSHDDTQK 302 (309)
T ss_dssp HHHHHHHHHHHTC-------CCCHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCC--CCCHHHHHH
Confidence 999999999999999985 588888753
No 39
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Probab=100.00 E-value=8.3e-37 Score=283.82 Aligned_cols=251 Identities=23% Similarity=0.240 Sum_probs=204.4
Q ss_pred CceEEecCCchHHHHHHHHHc--CCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEE
Q 046789 12 NRIVVQGGGNAGNALTCAARL--GLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTC 89 (336)
Q Consensus 12 ~~~~~~~GG~a~n~a~~l~~L--G~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~ 89 (336)
...+..+||++.|+|.++++| |.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.+++.++ +| .|++
T Consensus 43 ~~~~~~~GG~~~NvA~~la~Lg~G~~~~~ig~vG~D~~G~~l~~~L~~~GV~~~~v~~~~~~~T~~~~v~~~-~g-~r~~ 120 (328)
T 4e69_A 43 GTYRLGFAGDTFNTAWYLARLRPESRISYFSAIGDDALSQQMRAAMSAAGIDGGGLRVIPGRTVGLYLITLE-QG-ERSF 120 (328)
T ss_dssp TEEEEEEECHHHHHHHHHHHHCTTSEEEEECEECSSHHHHHHHHHHHHTTEECTTCEECTTCCCEEEEEEEE-TT-EEEE
T ss_pred CceEEecCCHHHHHHHHHHhcCCCCcEEEEEeeCCCHHHHHHHHHHHHcCCccceEEEcCCCCCeEEEEEec-CC-ceEE
Confidence 455689999999999999999 8999999999999999999999999999999998877778999999988 55 4555
Q ss_pred EecCCCC----CCCCcccchhhHhhhccCCcEEEEcCCc--------HHHHHHHHHHHHhCCCcEEEeCCc---------
Q 046789 90 IHTPGDP----PMIPDDLSESTIFSALDGARILYLDGRL--------PDTAIIVAQEAARKNIPILIDTER--------- 148 (336)
Q Consensus 90 ~~~~~~~----~~~~e~~~~~~~~~~l~~~~~i~~~~~~--------~~~~~~~~~~a~~~~~~v~~d~~~--------- 148 (336)
++.++.. .+..+++ ..+.++.++++|++++. .+.+.++++.+++.++++++|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~ 196 (328)
T 4e69_A 121 AYWRGQSAARELAGDADA----LAAAMARADVVYFSGITLAILDQCGRATLLRALAQARATGRTIAFDPNLRPRLWAGTG 196 (328)
T ss_dssp EEECTTCGGGGTTSCHHH----HHHHHTTCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGCSCHH
T ss_pred EEeCCCCHHHhhcCcccc----chHHhcCCCEEEECCchhhccCchHHHHHHHHHHHHHhCCCEEEEeCCCChhhcCCHH
Confidence 5444322 1222222 23678999999999753 245668888999999999999941
Q ss_pred -chHhHHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHH
Q 046789 149 -QRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLL 227 (336)
Q Consensus 149 -~~~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 227 (336)
..+.+.++++++|++++|++|+..+++.++.. .+++.+.. .+++.+|+|+|++|++++..+...
T Consensus 197 ~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~-~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~------------- 261 (328)
T 4e69_A 197 EMTETIMQGAAVSDIALPSFEDEAAWFGDAGPD-ATADRYAR-AGVRSVVVKNGPHAVHFLQDGRRG------------- 261 (328)
T ss_dssp HHHHHHHHHHTTCSEECCBHHHHHHHHTCSSHH-HHHHHHHT-TTCSEEEEBCTTSCEEEEETTEEE-------------
T ss_pred HHHHHHHHHHHhCCEEeCCHHHHHHHcCCCCHH-HHHHHHHh-cCCCEEEEEeCCCCeEEEeCCceE-------------
Confidence 23456788999999999999999999876544 44555554 389999999999999998765432
Q ss_pred HHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHH
Q 046789 228 EQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFA 307 (336)
Q Consensus 228 ~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a 307 (336)
++| ++ +..+++|||||||+|.|||+++|++|+++++|+++|
T Consensus 262 -----------~~~--------------------------~~--~~~~vvdttGAGDaf~a~~~~~l~~g~~l~~a~~~A 302 (328)
T 4e69_A 262 -----------RVP--------------------------VP--PVAQVVDTTAAGDSFNAGLLDSVLAGQPLETAIAAA 302 (328)
T ss_dssp -----------EEC--------------------------CC--CCCSCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred -----------Eec--------------------------CC--CCCCccCCCChhHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 444 41 347899999999999999999999999999999999
Q ss_pred HHHHHhhccccCCcc
Q 046789 308 AQVAAAGCRALGART 322 (336)
Q Consensus 308 ~~~Aa~~~~~~g~~~ 322 (336)
+++|+.+|++.|+.+
T Consensus 303 ~~~aa~~v~~~Ga~~ 317 (328)
T 4e69_A 303 AALAGQVVQGKGALV 317 (328)
T ss_dssp HHHHHHHHTSSSSSC
T ss_pred HHHHHHHHccCCCcC
Confidence 999999999999864
No 40
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*
Probab=100.00 E-value=7.9e-37 Score=282.02 Aligned_cols=250 Identities=24% Similarity=0.329 Sum_probs=205.5
Q ss_pred ceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEec
Q 046789 13 RIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHT 92 (336)
Q Consensus 13 ~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~ 92 (336)
..+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.+++.++. |.+.+..+.
T Consensus 27 ~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~~T~~~~~~~~~-g~~~~~~~~ 105 (313)
T 3ewm_A 27 LFEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGIVFVQLKG-ASPSFLLYD 105 (313)
T ss_dssp EEEEEEECHHHHHHHHHHHTTCEEEEEEEEESSHHHHHHHHHHHHTTCBCTTEEEESSSCCEEEEEECSS-SSCEEEECC
T ss_pred ceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCCHHHHHHHHHHHHcCCCccceeecCCCCceEEEEEecC-CCcceEeec
Confidence 3458999999999999999999999999999999999999999999999999987788889988888764 544444443
Q ss_pred CCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH------HHHHHHHHHHHhCCCcEEEeCCcc-----------hHhHH
Q 046789 93 PGD-PPMIPDDLSESTIFSALDGARILYLDGRLP------DTAIIVAQEAARKNIPILIDTERQ-----------RERID 154 (336)
Q Consensus 93 ~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~------~~~~~~~~~a~~~~~~v~~d~~~~-----------~~~~~ 154 (336)
..+ ..++++++.. +.++.++++|+++... +.+.++++.++ .++++++|+... .+.+.
T Consensus 106 ~~a~~~l~~~~~~~----~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~-~~~~v~~Dp~~~~~~~~~~~~~~~~~~~ 180 (313)
T 3ewm_A 106 DVAYFNMTLNDINW----DIVEEAKIVNFGSVILARNPSRETVMKVIKKIK-GSSLIAFDVNLRLDLWRGQEEEMIKVLE 180 (313)
T ss_dssp SSGGGCCCGGGCCH----HHHHHCSEEEEESGGGGSTTHHHHHHHHHHHHB-TTBEEEEECCCCGGGGTTCHHHHHHHHH
T ss_pred cCHHHhCChhhCCH----HHhCCCCEEEEcCcccCCcchHHHHHHHHHHhc-cCCEEEEeCCCChHHcCCCHHHHHHHHH
Confidence 322 3678887775 4577899999998742 56678888887 468999999421 24567
Q ss_pred HhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhc
Q 046789 155 EFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRK 234 (336)
Q Consensus 155 ~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (336)
++++++|++++|++|+..+.+... ...+.+.+|+|+|++|+++++.++..
T Consensus 181 ~~l~~~di~~~N~~E~~~l~~~~~----------~~~~~~~vviT~G~~G~~~~~~~~~~-------------------- 230 (313)
T 3ewm_A 181 ESIKLADIVKASEEEVLYLENQGV----------EVKGSMLTAITLGPKGCRLIKNETVV-------------------- 230 (313)
T ss_dssp HHHHHCSEEEEEHHHHHHHHTTTC----------CCCCSSEEEEECGGGEEEEEETTEEE--------------------
T ss_pred HHHhhCCEEecCHHHHHHHhccCc----------cccCceEEEEEECCCCeEEEECCeeE--------------------
Confidence 788999999999999988766421 11256678999999999998765432
Q ss_pred CCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHH--hCCChhhHHHHHHHHHH
Q 046789 235 DDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALC--ANMSPEKMLPFAAQVAA 312 (336)
Q Consensus 235 ~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~--~g~~l~~al~~a~~~Aa 312 (336)
++| + ++++++|||||||+|.|||+++|+ +|+++++|+++|+++|+
T Consensus 231 ----~~~--------------------------~---~~v~vvDttGAGDaf~a~~~~~l~~~~g~~l~~a~~~A~~~aa 277 (313)
T 3ewm_A 231 ----DVP--------------------------S---YNVNPLDTTGAGDAFMAALLVGILKLKGLDLLKLGKFANLVAA 277 (313)
T ss_dssp ----EEE--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred ----EcC--------------------------C---CCcccCCCCCchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 444 4 567899999999999999999999 99999999999999999
Q ss_pred hhccccCCccCCCCCCCccc
Q 046789 313 AGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 313 ~~~~~~g~~~~~p~~~e~~~ 332 (336)
.+|++.|+.+ +|+++|+++
T Consensus 278 ~~v~~~G~~~-~p~~~ev~~ 296 (313)
T 3ewm_A 278 LSTQKRGAWS-TPRKDELLK 296 (313)
T ss_dssp HHTTSCSSCC-CCCHHHHTT
T ss_pred HHHccCCCCC-CCCHHHHHH
Confidence 9999999964 899999864
No 41
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A*
Probab=100.00 E-value=1.1e-36 Score=284.61 Aligned_cols=262 Identities=19% Similarity=0.266 Sum_probs=209.3
Q ss_pred ceEEecCCchHHHHHHHHHcC----CCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeE
Q 046789 13 RIVVQGGGNAGNALTCAARLG----LNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRT 88 (336)
Q Consensus 13 ~~~~~~GG~a~n~a~~l~~LG----~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~ 88 (336)
..+..+||++.|+|.++++|| .++.++|.+|+|.+|+.+++.|++.||+++++.. ++.+|+.++++++ +| .|+
T Consensus 57 ~~~~~~GG~~~NvA~~la~lgg~~~~~~~~ig~vG~D~~G~~i~~~L~~~gv~~~~v~~-~~~~T~~~~~~~~-~g-~r~ 133 (345)
T 1bx4_A 57 KVEYHAGGSTQNSIKVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQ-NEQPTGTCAACIT-GD-NRS 133 (345)
T ss_dssp CCEEEEECHHHHHHHHHHHHHCSSTTCEEEEEEEESSHHHHHHHHHHHHTTCEEEEEEE-SSSCCCEEEEEEE-TT-EEE
T ss_pred CceecCCcHHHHHHHHHHHhcCCCCCcEEEEEEeCCChhHHHHHHHHHHcCCceeeeec-CCCCCceEEEEEc-CC-ceE
Confidence 345889999999999999996 9999999999999999999999999999999864 6678999999887 43 555
Q ss_pred EEecCCC-CCCCCc-ccchhhHhhhccCCcEEEEcCCc----HHHHHHHHHHHHhCCCcEEEeCCcc------hHhHHHh
Q 046789 89 CIHTPGD-PPMIPD-DLSESTIFSALDGARILYLDGRL----PDTAIIVAQEAARKNIPILIDTERQ------RERIDEF 156 (336)
Q Consensus 89 ~~~~~~~-~~~~~e-~~~~~~~~~~l~~~~~i~~~~~~----~~~~~~~~~~a~~~~~~v~~d~~~~------~~~~~~~ 156 (336)
.+...+. ..++++ ++....+.+.++.++++|++++. ++.+..+++.++++++++++|+... .+.+..+
T Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~ 213 (345)
T 1bx4_A 134 LIANLAAANCYKKEKHLDLEKNWMLVEKARVCYIAGFFLTVSPESVLKVAHHASENNRIFTLNLSAPFISQFYKESLMKV 213 (345)
T ss_dssp EEEECGGGGGCCGGGTTTSHHHHHHHHHCSEEEEEGGGGGTCHHHHHHHHHHHHHTTCEEEEECCSHHHHHHTHHHHHHH
T ss_pred eeeccchHhhcCcccccCcHHHHHHHhhCCEEEEEEEeccCCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHH
Confidence 5544443 367777 77643345667899999998763 4677789999999999999999532 2456778
Q ss_pred hhcCcEEecCcccchhhcCC----CChHHHHHHHHHcC-----CCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHH
Q 046789 157 LKLASYAVCSAKFPQVWTEA----PSVPSALVSMLLRL-----PNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLL 227 (336)
Q Consensus 157 l~~~dil~~n~~e~~~l~~~----~~~~~~~~~~l~~~-----~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 227 (336)
++++|++++|++|+..+++. ....+.+++.+... .+++.||+|+|++|+++++.+...
T Consensus 214 l~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~------------- 280 (345)
T 1bx4_A 214 MPYVDILFGNETEAATFAREQGFETKDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVT------------- 280 (345)
T ss_dssp GGGCSEEEEEHHHHHHHHHHTTCCCCCHHHHHHHHHTSCCSCTTSCCEEEEEETTEEEEEECSSCEE-------------
T ss_pred hccCCEEeCCHHHHHHHhcccCCCCCCHHHHHHHHHhcccccccCCCEEEEEeCCCCeEEEECCeEE-------------
Confidence 99999999999999988642 22344555555553 388999999999999987654322
Q ss_pred HHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHH
Q 046789 228 EQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFA 307 (336)
Q Consensus 228 ~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a 307 (336)
++| +++.++.+++|||||||+|.|||+++|++|+++++|+++|
T Consensus 281 -----------~~~--------------------------~~~v~~~~vvDttGAGDaf~ag~~~~l~~g~~~~~a~~~A 323 (345)
T 1bx4_A 281 -----------AFA--------------------------VLDQDQKEIIDTNGAGDAFVGGFLSQLVSDKPLTECIRAG 323 (345)
T ss_dssp -----------EEC--------------------------CCCCCCTTCCCHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred -----------EEe--------------------------ccccCcCccccCCCcchHHHHHHHHHHHcCCCHHHHHHHH
Confidence 344 4332334899999999999999999999999999999999
Q ss_pred HHHHHhhccccCCccCCCCCCC
Q 046789 308 AQVAAAGCRALGARTSLPHRTD 329 (336)
Q Consensus 308 ~~~Aa~~~~~~g~~~~~p~~~e 329 (336)
+++|+.+|++.|+. +|++-+
T Consensus 324 ~~~aa~~v~~~G~~--~p~~~~ 343 (345)
T 1bx4_A 324 HYAASIIIRRTGCT--FPEKPD 343 (345)
T ss_dssp HHHHHHHTTSSSSC--CCSSCC
T ss_pred HHHHHHHHhccCCC--CCCccc
Confidence 99999999999985 576643
No 42
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1
Probab=100.00 E-value=1.3e-36 Score=279.70 Aligned_cols=260 Identities=20% Similarity=0.243 Sum_probs=207.4
Q ss_pred CCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 4 DPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 4 ~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
+|.+ .+++..+ ..+||++.|+|.++++||.++.++|.+|+ .+|+.+++.|++.||+++++...+ .|+.++.
T Consensus 17 ~~~~-~~g~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~~~~vG~-~~g~~i~~~L~~~gv~~~~v~~~~--~t~~~~~ 92 (306)
T 2abq_A 17 VENF-QQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG-FTGAYVRNALEKEEIGLSFIEVEG--DTRINVK 92 (306)
T ss_dssp CTTC-CSSSEEECSEEEEEEECHHHHHHHHHHHTTCCCEEEEEEEH-HHHHHHHHHHHHTTCEECCEEESS--CCEEEEE
T ss_pred cCCc-ccCCeEEeceeEecCCchHHHHHHHHHHcCCCceEEEEecc-hhHHHHHHHHHHcCCceEEEEcCC--CCceEEE
Confidence 5664 6676655 78999999999999999999999999998 899999999999999999987643 3666665
Q ss_pred EEcCCCCeeEEEecCCCCCCCCcccchh-hHhhhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCCcchHh
Q 046789 79 IVDNQMKTRTCIHTPGDPPMIPDDLSES-TIFSALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTERQRER 152 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~~~~~~e~~~~~-~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~~~~~~ 152 (336)
+ + +| .++.+..++ ..+++++++.. .....++.++++|++++.+ +.+.++++.++++++++++|+.. +.
T Consensus 93 ~-~-~g-~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~--~~ 166 (306)
T 2abq_A 93 I-K-GK-QETELNGTA-PLIKKEHVQALLEQLTELEKGDVLVLAGSVPQAMPQTIYRSMTQIAKERGAFVAVDTSG--EA 166 (306)
T ss_dssp E-E-SS-SCEEEBCCC-CCCCHHHHHHHHHHHTTCCTTCEEEEESCCCTTSCTTHHHHHHHHHHTTTCEEEEECCH--HH
T ss_pred E-e-CC-ceEEEECCC-CCCCHHHHHHHHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEECCh--HH
Confidence 5 3 44 456666666 45666655431 0111268899999988764 57778999999999999999963 35
Q ss_pred HHHhhh-cCcEEecCcccchhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHH
Q 046789 153 IDEFLK-LASYAVCSAKFPQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLL 227 (336)
Q Consensus 153 ~~~~l~-~~dil~~n~~e~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 227 (336)
+.++++ ++|++++|.+|+..+++... ...++++.+... +++.+|+|+|++|++++..+...
T Consensus 167 ~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~-g~~~vvvt~G~~G~~~~~~~~~~------------- 232 (306)
T 2abq_A 167 LHEVLAAKPSFIKPNHHELSELVSKPIASIEDAIPHVQRLIGE-GIESILVSFAGDGALFASAEGMF------------- 232 (306)
T ss_dssp HHHHGGGCCSEECCBHHHHHHHHTSCCCSHHHHHHHHHHHHHT-TCCEEEEECGGGCEEEEETTEEE-------------
T ss_pred HHHHHhcCCcEEecCHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCCEEEEecCCCceEEEeCCCEE-------------
Confidence 678889 99999999999999987632 223344555553 89999999999999988654322
Q ss_pred HHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHH
Q 046789 228 EQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFA 307 (336)
Q Consensus 228 ~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a 307 (336)
++| + ++.+++|||||||+|.|||+++|++|+++++|+++|
T Consensus 233 -----------~~~--------------------------~---~~v~vvdttGAGDaF~a~~~~~l~~g~~~~~a~~~A 272 (306)
T 2abq_A 233 -----------HVN--------------------------V---PSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFA 272 (306)
T ss_dssp -----------EEC--------------------------C---CCCCCCCCSSHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred -----------EEe--------------------------C---CCccccCCccHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 333 4 567899999999999999999999999999999999
Q ss_pred HHHHHhhccccCCccCCCCCCCcc
Q 046789 308 AQVAAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 308 ~~~Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
+++|+.+|++. ++|+++|++
T Consensus 273 ~a~aa~~v~~~----~~p~~~ev~ 292 (306)
T 2abq_A 273 VAAGSATAFSD----GFCTREEVE 292 (306)
T ss_dssp HHHHHHHHHSS----SCCCHHHHH
T ss_pred HHHHHHHhcCc----CCCCHHHHH
Confidence 99999999997 468888875
No 43
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*
Probab=100.00 E-value=1.7e-37 Score=291.03 Aligned_cols=253 Identities=17% Similarity=0.142 Sum_probs=199.7
Q ss_pred EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEE-ecC
Q 046789 15 VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCI-HTP 93 (336)
Q Consensus 15 ~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~-~~~ 93 (336)
+..+||+ .|+|.++++||.++.++|.+|+|.+|+.+++.|++.||++..+ ..++.+|+.++++++.+ ..++.+ ...
T Consensus 90 ~~~~GG~-~NvA~~la~LG~~v~~ig~vG~D~~G~~i~~~L~~~GV~~~~~-~~~~~~T~~~~~~~~~~-~~~~~~~~~~ 166 (352)
T 4e84_A 90 EERLGGA-ANVARNAVTLGGQAGLLCVVGCDEPGERIVELLGSSGVTPHLE-RDPALPTTIKLRVLARQ-QQLLRVDFEA 166 (352)
T ss_dssp EEEEEEH-HHHHHHHHHTTCEEEEEEEEESSHHHHHHHHHHTTTSCEEEEE-EETTSCCCEEEEEEESS-CEEEEEEECC
T ss_pred EEecChH-HHHHHHHHHcCCCEEEEEEeCCChhHHHHHHHHHHcCCceeeE-ECCCCCCceEEEEEcCC-ceEEEEEcCC
Confidence 3789997 8999999999999999999999999999999999999999544 45677899999888854 444433 222
Q ss_pred CCCCCCCcccch--hhHhhhccCCcEEEEcCCc---HHHHHHHHHHHHhCCCcEEEeCCcchHhHHHhhhcCcEEecCcc
Q 046789 94 GDPPMIPDDLSE--STIFSALDGARILYLDGRL---PDTAIIVAQEAARKNIPILIDTERQRERIDEFLKLASYAVCSAK 168 (336)
Q Consensus 94 ~~~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~---~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~l~~~dil~~n~~ 168 (336)
+ . ..+.... +.+.+.++.+++++++++. .+.+.++++.++++++++++|+... ...+++.+|++++|++
T Consensus 167 ~-~--~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~---~~~~l~~~dil~pN~~ 240 (352)
T 4e84_A 167 M-P--THEVLLAGLARFDVLLPQHDVVLMSDYAKGGLTHVTTMIEKARAAGKAVLVDPKGD---DWARYRGASLITPNRA 240 (352)
T ss_dssp C-C--CHHHHHHHHHHHHHHGGGCSEEEEECCSSSSCSSHHHHHHHHHHTTCEEEEECCSS---CCSTTTTCSEECCBHH
T ss_pred C-C--CHHHHHHHHHHHHHhcccCCEEEEeCCCCCCHHHHHHHHHHHHhcCCEEEEECCCc---chhhccCCcEEcCCHH
Confidence 2 1 1111111 2245678999999999653 2447789999999999999999642 2257799999999999
Q ss_pred cchhhcCCCC---hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccc
Q 046789 169 FPQVWTEAPS---VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCIS 245 (336)
Q Consensus 169 e~~~l~~~~~---~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~ 245 (336)
|+..+++... ..+.+++.+....+++.||+|+|++|+++++++... ++|
T Consensus 241 Ea~~l~g~~~~~~~~~~~a~~l~~~~g~~~VvvT~G~~Ga~~~~~~~~~------------------------~~p---- 292 (352)
T 4e84_A 241 ELREVVGQWKSEDDLRARVANLRAELDIDALLLTRSEEGMTLFSAGGEL------------------------HAP---- 292 (352)
T ss_dssp HHHHHHCCCSSHHHHHHHHHHHHHHHTCSEEEEECGGGCEEEEETTEEE------------------------EEC----
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhCCCEEEEEcCCCcEEEEECCceE------------------------Eec----
Confidence 9999988322 223344444432389999999999999998765432 444
Q ss_pred hhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccCCccCCC
Q 046789 246 SLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTSLP 325 (336)
Q Consensus 246 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g~~~~~p 325 (336)
+ ++++++|||||||+|.|||+++|++|+++++|+++|+++|+.+|++.|+.+ |
T Consensus 293 ----------------------a---~~v~vvDttGAGDaF~ag~l~~l~~g~~l~~al~~A~aaaa~~v~~~Ga~~--~ 345 (352)
T 4e84_A 293 ----------------------A---LAREVFDVSGAGDTVIATVATMLGAGVPLVDAVVLANRAAGIVVGKLGTAT--V 345 (352)
T ss_dssp ----------------------C---CCSCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSSCC--C
T ss_pred ----------------------C---CCcCccCCccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcc--C
Confidence 4 567899999999999999999999999999999999999999999999976 7
Q ss_pred CCCCcc
Q 046789 326 HRTDPR 331 (336)
Q Consensus 326 ~~~e~~ 331 (336)
+++||+
T Consensus 346 t~~el~ 351 (352)
T 4e84_A 346 DYDELF 351 (352)
T ss_dssp CHHHHT
T ss_pred CHHHhc
Confidence 888876
No 44
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}
Probab=100.00 E-value=1.5e-36 Score=279.05 Aligned_cols=258 Identities=18% Similarity=0.272 Sum_probs=206.2
Q ss_pred CCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 4 DPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 4 ~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
+|. |.+++..+ ..+||++.|+|.++++||.++.++|.+|+ ++|+.+++.|++.||+++++...+ .|+.++.
T Consensus 17 ~~~-~~~g~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~~~~vG~-~~g~~i~~~l~~~gv~~~~v~~~~--~t~~~~~ 92 (306)
T 2jg5_A 17 TND-FKIDGLNRATATYKFAGGKGINVSRVLKTLDVESTALGFAGG-FPGKFIIDTLNNSAIQSNFIEVDE--DTRINVK 92 (306)
T ss_dssp CSS-CCTTSEEECSEEEEEEESHHHHHHHHHHHTTCCCEEEEEECH-HHHHHHHHHHHHTTCEECCEECSS--CCEEEEE
T ss_pred cCC-cccCceEEeceeEecCCchHHHHHHHHHHcCCCeeEEEEecC-cchHHHHHHHHHCCCceeEEEcCC--CCeEEEE
Confidence 565 56777665 78999999999999999999999999999 799999999999999999987643 3666665
Q ss_pred EEcCCCCeeEEEecCCCCCCCCcccchhhHhhh---ccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCCcch
Q 046789 79 IVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSA---LDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTERQR 150 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~---l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~~~~ 150 (336)
+ . +| .++.+..++ ..+++++++. +.+. ++.++++|+++..+ +....+++.++++++++++|+..
T Consensus 93 ~-~-~g-~~~~~~~~g-~~~~~~~~~~--~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~-- 164 (306)
T 2jg5_A 93 L-K-TG-QETEINAPG-PHITSTQFEQ--LLQQIKNTTSEDIVIVAGSVPSSIPSDAYAQIAQITAQTGAKLVVDAEK-- 164 (306)
T ss_dssp E-E-SS-SEEEEECCC-CCCCHHHHHH--HHHHHTTCCTTCEEEEESCCCTTSCTTHHHHHHHHHHHHCCEEEEECCH--
T ss_pred E-c-CC-CEEEEECCC-CCCCHHHHHH--HHHHHHhccCCCEEEEeCCCCCCCChHHHHHHHHHHHHCCCEEEEECCh--
Confidence 5 3 44 466676666 3466665543 1111 67899999988764 56778899999999999999963
Q ss_pred HhHHHhhh-cCcEEecCcccchhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhH
Q 046789 151 ERIDEFLK-LASYAVCSAKFPQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDS 225 (336)
Q Consensus 151 ~~~~~~l~-~~dil~~n~~e~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~ 225 (336)
..+..+++ .+|++++|++|+..+++... ..+.+++.+.. .+++.+++|+|++|+++++.+...
T Consensus 165 ~~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~----------- 232 (306)
T 2jg5_A 165 ELAESVLPYHPLFIKPNKDELEVMFNTTVNSDADVIKYGRLLVD-KGAQSVIVSLGGDGAIYIDKEISI----------- 232 (306)
T ss_dssp HHHHHHGGGCCSEECCBHHHHHHHTTSCCCSHHHHHHHHHHHHH-TTCSCEEEECGGGCEEEECSSEEE-----------
T ss_pred HHHHHHHhcCCeEEecCHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCCEEEEccCCCceEEEeCCcEE-----------
Confidence 34667777 69999999999999987642 22344555554 389999999999999887654322
Q ss_pred HHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHH
Q 046789 226 LLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLP 305 (336)
Q Consensus 226 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~ 305 (336)
++| + ++.+++|||||||+|.|||+++|++|+++++|++
T Consensus 233 -------------~~~--------------------------~---~~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~ 270 (306)
T 2jg5_A 233 -------------KAV--------------------------N---PQGKVVNTVGSGDSTVAGMVAGIASGLSIEKAFQ 270 (306)
T ss_dssp -------------EEE--------------------------C---CCCCCCCCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred -------------EEe--------------------------C---CcccccCCcChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 333 4 5678999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCccCCCCCCCcc
Q 046789 306 FAAQVAAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 306 ~a~~~Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
+|+++|+.+|++.| +|+++|++
T Consensus 271 ~A~a~aa~~v~~~G----~~~~~ev~ 292 (306)
T 2jg5_A 271 QAVACGTATAFDED----LATRDAIE 292 (306)
T ss_dssp HHHHHHHHHHTSSS----SCCHHHHH
T ss_pred HHHHHHHHHHcCCC----CCCHHHHH
Confidence 99999999999999 58888875
No 45
>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601}
Probab=100.00 E-value=8.2e-37 Score=286.25 Aligned_cols=261 Identities=20% Similarity=0.291 Sum_probs=192.5
Q ss_pred eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecC
Q 046789 14 IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTP 93 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~ 93 (336)
.+..+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+ .++....++..+.+.+..
T Consensus 51 ~~~~~GG~~aNvA~~larLG~~~~~ig~vG~D~~G~~l~~~L~~~GVdt~~v~~~~~~~t~-~~~~~~~~~~~~~~~~~~ 129 (351)
T 4gm6_A 51 LDIHIGGAEANVAVNLSKLGHPTRIATVVPANPIGKMAVEHLWRHQVDTAFVVEAGDRLGT-YYLESGTALKAPSVVYDR 129 (351)
T ss_dssp EEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHHHHHHHHHTTEECTTEEECSSCCCE-EEEECCBTTBCCEEEEEC
T ss_pred EEEecCChHHHHHHHHHHcCCCeEEEEEeCCCHHHHHHHHHHHHcCCCcccccccCCccce-eEEEEccCCcceEEEEcc
Confidence 3478999999999999999999999999999999999999999999999999876655444 444444445555555544
Q ss_pred CCC---CCCCcccchhhHhhhccCCcEEEEcCCcH-------HHHHHHHHHHHhCCCcEEEeCC---------cchHhHH
Q 046789 94 GDP---PMIPDDLSESTIFSALDGARILYLDGRLP-------DTAIIVAQEAARKNIPILIDTE---------RQRERID 154 (336)
Q Consensus 94 ~~~---~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-------~~~~~~~~~a~~~~~~v~~d~~---------~~~~~~~ 154 (336)
... .+.+.++.. .+.++.++++|+++..+ +.+.++++.|++++++|+||++ ..++.+.
T Consensus 130 ~~~a~~~~~~~d~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ak~~g~~v~~D~n~r~~lw~~~~~~~~~~ 206 (351)
T 4gm6_A 130 QHSSFARHKSMDWDL---SELLKGIRVLHVSGITIALSTFWLEMVVKIIREAKRNGIKISFDMNYRAKLWELEAAKRAYQ 206 (351)
T ss_dssp TTCHHHHCCCCCCCH---HHHHTTEEEEEEEHHHHHHCHHHHHHHHHHHHHHHHTTCEEEEECCCCTTTSCHHHHHHHHH
T ss_pred ccchhhhCCccccCH---HHHHhhcccceecccchhhchhHHHHHHHHHHHHHHcCCCcccCCCcCchhhhhhhHHHHHH
Confidence 322 344455543 46789999999987643 4667899999999999999993 2245677
Q ss_pred HhhhcCcEEecCcccchhhcCCCChHHHHHH-HHHcCCCCcE------EEEeecCC--ceEEEeeccCCCCchhhhhhhH
Q 046789 155 EFLKLASYAVCSAKFPQVWTEAPSVPSALVS-MLLRLPNLRF------AIVTLGED--GCIMLERSVNESPELEEIDVDS 225 (336)
Q Consensus 155 ~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~-~l~~~~~~~~------vvvt~G~~--G~~~~~~~~~~~~~~~~~~~~~ 225 (336)
++++++|++++|++|+..+++.....+...+ .....+.++. .+++.+.. +..++..+..
T Consensus 207 ~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------ 274 (351)
T 4gm6_A 207 QLLPLVDYCSAGQMDAVAFFEISSETTDYYQAMHDKYPNIELFYATKRTVISASHHLLQGHLWTQGEC------------ 274 (351)
T ss_dssp HHGGGCSEEECCHHHHHHTSCCCTTCSCHHHHHHHHCTTCCEEEEEEEEEEETTEEEEEEEEEETTEE------------
T ss_pred HHHHhCCccccCHHHHHHHhCCCCchhHHHHHHHhhhhhhhhhhccccceeeeccCCceEEEEeCCce------------
Confidence 8899999999999999999875443222222 2222223333 33333322 2333333322
Q ss_pred HHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHH
Q 046789 226 LLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLP 305 (336)
Q Consensus 226 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~ 305 (336)
+..++. +..+|+|||||||+|.|||+++|++|+++++|++
T Consensus 275 --------------------------------------~~~~~~--~~~~VvDttGAGDaF~ag~l~~l~~g~~~~~al~ 314 (351)
T 4gm6_A 275 --------------------------------------WESEEY--AIYPIVDRVGGGDAYTAAVLHGILSEWRPDETVK 314 (351)
T ss_dssp --------------------------------------EEEEEE--EECSCSCCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred --------------------------------------EEeCCC--CCCCcCCCCChhHHHHHHHHHHHHCCCCHHHHHH
Confidence 221132 4567999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCccCCCCCCCcc
Q 046789 306 FAAQVAAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 306 ~a~~~Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
+|+++|+++|++.|+.+.+|. +|++
T Consensus 315 ~A~aaaal~v~~~Ga~~~~~~-~ev~ 339 (351)
T 4gm6_A 315 FATAAAGLKHSIHGDINPFDE-KTIA 339 (351)
T ss_dssp HHHHHHHHHTTSSSSSCCCCH-HHHH
T ss_pred HHHHHHHHHhCCCCCCCCCCH-HHHH
Confidence 999999999999999887664 4554
No 46
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum}
Probab=100.00 E-value=2.8e-36 Score=278.41 Aligned_cols=264 Identities=17% Similarity=0.164 Sum_probs=206.3
Q ss_pred CCCCCCCCceEEecCCchHHHHHHHHHcCC-CceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEE--c
Q 046789 5 PLPPLPENRIVVQGGGNAGNALTCAARLGL-NPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIV--D 81 (336)
Q Consensus 5 ~~~p~~~~~~~~~~GG~a~n~a~~l~~LG~-~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~--~ 81 (336)
|.++.+.+..+..+||++.|+|.++++||. ++.++|.+|+| +|+.+++.|++.||+++++.+.++.+|......+ +
T Consensus 14 D~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~ig~vG~D-~g~~~~~~L~~~gVd~~~v~~~~~~~T~~~~g~~~~~ 92 (313)
T 3kd6_A 14 DDIETPFGRSDNTLGGSSTYIALSASYFTDEPIRMVGVVGSD-FGKEHFDLLHAKNIDTRGIQVIEDGKTFRWAGRYHYD 92 (313)
T ss_dssp EEEECSSCEEEEEEECHHHHHHHHHTTTCSSCEEEEEEEETT-SCHHHHHHHHHTTEEEEEEEEETTCCCEEEEEEECTT
T ss_pred eeecCCCCcccccCCCHHHHHHHHHHHhCCCceEEEEecCCC-cHHHHHHHHHHcCCCccceEEcCCCCeeeeeeeeecc
Confidence 444455566778999999999999999999 99999999999 9999999999999999999887666663322222 2
Q ss_pred CCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCc-----chHhHHH
Q 046789 82 NQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTER-----QRERIDE 155 (336)
Q Consensus 82 ~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~-----~~~~~~~ 155 (336)
.+ ..+......+. ..+.++ + .+.+++++++|+++..++....+++.+ +.+.++++|+.. ..+.+.+
T Consensus 93 ~~-~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~v~~Dp~~~~~~~~~~~~~~ 164 (313)
T 3kd6_A 93 MN-TRDTLDTQLNVFAEFDPH-V-----PQYYRDSKFVCLGNIDPELQLKVLDQI-DDPKLVVCDTMNFWIEGKPEELKK 164 (313)
T ss_dssp SS-CEEEEEEECGGGTTCCCC-C-----CGGGTTCSEEEECSSCHHHHHHHHTTC-SSCSEEEEECCHHHHHHCHHHHHH
T ss_pred cc-ccceeecccchHhhcCcc-c-----hHHHccCCEEEEcCCCHHHHHHHHHHH-hhCCEEEEcChhhhhhhhHHHHHH
Confidence 22 23333332221 233332 1 245789999999888787777788777 678899999932 3466778
Q ss_pred hhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcC
Q 046789 156 FLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKD 235 (336)
Q Consensus 156 ~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (336)
+++++|++++|++|+..+++..+.. .+++.+.. .+++.||+|+|++|+++++.++..
T Consensus 165 ~l~~~dil~~N~~E~~~l~g~~~~~-~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~--------------------- 221 (313)
T 3kd6_A 165 VLARVDVFIVNDSEARLLSGDPNLV-KTARIIRE-MGPKTLIIKKGEHGALLFTDNGIF--------------------- 221 (313)
T ss_dssp HHTTCSEEEEEHHHHHHHHSCSCHH-HHHHHHHT-TSCSEEEEECTTSCEEEEETTEEE---------------------
T ss_pred HHhcCCEEEeCHHHHHHHhCCCCHH-HHHHHHHH-cCCCEEEEeeCCCcEEEEECCceE---------------------
Confidence 9999999999999999999876544 44455554 489999999999999998765432
Q ss_pred CCCCCccccchhhhhhhccCcccccceeeecccccCCCC-CccccCCchhhhHHHHHHHHHhCC-----ChhhHHHHHHH
Q 046789 236 DRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPS-ELVDTTGAGDAFIGAVLYALCANM-----SPEKMLPFAAQ 309 (336)
Q Consensus 236 ~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~vvd~tGAGDaF~ag~i~~l~~g~-----~l~~al~~a~~ 309 (336)
++| + ++. +++|||||||+|.|||+++|++|+ ++++|+++|++
T Consensus 222 ---~~~--------------------------~---~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~~~l~~a~~~a~~ 269 (313)
T 3kd6_A 222 ---AAP--------------------------A---FPLESIYDPTGAGDTFAGGFIGHLARCGNTSEAEMRKAVLYGSA 269 (313)
T ss_dssp ---EEC--------------------------C---CTTCCCSCCTTHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ---EeC--------------------------C---CCCCCcCCCCCccHHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Confidence 444 4 455 789999999999999999999998 89999999999
Q ss_pred HHHhhccccCCccC-CCCCCCccc
Q 046789 310 VAAAGCRALGARTS-LPHRTDPRL 332 (336)
Q Consensus 310 ~Aa~~~~~~g~~~~-~p~~~e~~~ 332 (336)
+|+.+|++.|+.+. .|+++|++.
T Consensus 270 ~aa~~v~~~G~~~~~~~~~~ev~~ 293 (313)
T 3kd6_A 270 MASFCVEQFGPYRYNDLDLLEVDD 293 (313)
T ss_dssp HHHHHTTSSTTGGGGTCCHHHHHH
T ss_pred HHHHHHeecCCCCCCCCCHHHHHH
Confidence 99999999999753 588888764
No 47
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=3.9e-37 Score=282.26 Aligned_cols=262 Identities=16% Similarity=0.168 Sum_probs=201.2
Q ss_pred CCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 4 DPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 4 ~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
++.+|.+++.++ ..+||++.|+|.++++||.++.++|.+|+|. +.+++.|++.||+++++.. ..+|+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~--~~~~~~L~~~gVd~~~v~~--~~~t~~~~i 91 (298)
T 1vk4_A 16 FIGHVSKDVNVVDGKREIAYGGGVVMGAITSSLLGVKTKVITKCTRED--VSKFSFLRDNGVEVVFLKS--PRTTSIENR 91 (298)
T ss_dssp EECCCEEEEEEETTEEEEEEECHHHHHHHHHHHTTCEEEEEEEECTTT--GGGGTTTGGGTCEEEEEEC--SSCEEEEEE
T ss_pred EeccccCceEeecCeEEEecCCHHHHHHHHHHHcCCceEEEEEEcCCH--HHHHHHHHHcCCceEEEec--CCCcEEEEE
Confidence 456677777766 7899999999999999999999999999997 7788999999999998753 344544444
Q ss_pred EEcCCCCeeEEEecCCCCCCCCcccchhhHhhhccCCcEEEEcCCc-HHHHHHHHHHHHhCCCcEEEeCCc---------
Q 046789 79 IVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRL-PDTAIIVAQEAARKNIPILIDTER--------- 148 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~-~~~~~~~~~~a~~~~~~v~~d~~~--------- 148 (336)
+ +.+|.+++..+......++++++.. ..++++|+++.. ++...++++.++++++++++|+..
T Consensus 92 ~-~~~g~~~~~~~~~~~~~l~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~v~~D~~~~~~~~~~~~ 163 (298)
T 1vk4_A 92 Y-GSDPDTRESFLISAADPFTESDLAF-------IEGEAVHINPLWYGEFPEDLIPVLRRKVMFLSADAQGFVRVPENEK 163 (298)
T ss_dssp C------CCEEEEEECCCCCCGGGGGG-------CCSSEEEECCSSTTSSCGGGHHHHHHHCSEEEEETHHHHEEEETTE
T ss_pred E-cCCCCeeEEEeccccccCCHHHcCc-------CCCCEEEECCcccccccHHHHHHHHHcCCEEEEecCcccccccccc
Confidence 3 4455555554443334666665542 578999998773 344456778888889999999952
Q ss_pred ----chHhHHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhh
Q 046789 149 ----QRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVD 224 (336)
Q Consensus 149 ----~~~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~ 224 (336)
.++.+.++++++|++++|++|+..+++..+..+ +++.+... +++.||+|+ ++|++++.. ...
T Consensus 164 ~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~-~~~~l~~~-g~~~vvvT~-~~G~~~~~~-~~~---------- 229 (298)
T 1vk4_A 164 LVYRDWEMKEKYLKYLDLFKVDSREAETLTGTNDLRE-SCRIIRSF-GAKIILATH-ASGVIVFDG-NFY---------- 229 (298)
T ss_dssp EEECCCTTHHHHGGGCSEEEEEHHHHHHHHSCSCHHH-HHHHHHHT-TCSSEEEEE-TTEEEEESS-SEE----------
T ss_pred ccccchHHHHhhcccCCEEecCHHHHHHHhCCCCHHH-HHHHHHhc-CCCEEEEEc-CCCcEEEeC-CEE----------
Confidence 123567789999999999999999998765444 44444443 899999999 999988765 322
Q ss_pred HHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHh-CCChhhH
Q 046789 225 SLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCA-NMSPEKM 303 (336)
Q Consensus 225 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~-g~~l~~a 303 (336)
++| + ++++++|||||||+|.|||+++|++ |+++++|
T Consensus 230 --------------~~~--------------------------~---~~v~vvDttGAGDaF~a~~~~~l~~~g~~~~~a 266 (298)
T 1vk4_A 230 --------------EAS--------------------------F---RSWSLEGRTGRGDTCTAAFLVGFVFKKMSIEKA 266 (298)
T ss_dssp --------------EEE--------------------------C---CCSSGGGGTTHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred --------------Eec--------------------------c---CCcccCCCcCccHHHHHHHHHHHHHcCCCHHHH
Confidence 333 4 5678999999999999999999999 9999999
Q ss_pred HHHHHHHHHhhccccCCccCCCCCCCcccccC
Q 046789 304 LPFAAQVAAAGCRALGARTSLPHRTDPRLASF 335 (336)
Q Consensus 304 l~~a~~~Aa~~~~~~g~~~~~p~~~e~~~~~~ 335 (336)
+++|+++|+.+|++.|+... |+++|+..|..
T Consensus 267 ~~~A~a~aa~~v~~~G~~~~-~~~~el~~~~~ 297 (298)
T 1vk4_A 267 TKFAAAVTSVKMRHPGPLRR-EDLEAISGDQY 297 (298)
T ss_dssp HHHHHHHHHHHTTSSSSCCG-GGGGGCC----
T ss_pred HHHHHHHHHHHHccCCCCCC-CCHHHHhcccc
Confidence 99999999999999999865 89999987753
No 48
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=6.7e-36 Score=273.47 Aligned_cols=250 Identities=19% Similarity=0.182 Sum_probs=193.2
Q ss_pred EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCC
Q 046789 16 VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGD 95 (336)
Q Consensus 16 ~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~ 95 (336)
..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.|| +++.+.++.+|+.+++.++.+|.+++.++....
T Consensus 21 ~~~GG~~~N~A~~la~LG~~~~~~~~vG~D~~g~~~~~~l~~~gv--~~v~~~~~~~T~~~~v~~~~~g~~~~~~~~~~~ 98 (296)
T 2qhp_A 21 KKIGGAPANFAYHVSQFGFDSRVVSAVGNDELGDEIMEVFKEKQL--KNQIERVDYPTGTVQVTLDDEGVPCYEIKEGVA 98 (296)
T ss_dssp EEEECHHHHHHHHHHHTTCEEEEEEEEESSHHHHHHHHHHHHTTC--CEEEEEESSCCEEEEEC------CCEEECSSCG
T ss_pred CCCCCHHHHHHHHHHHcCCCeeEEEEeCCChHHHHHHHHHHHcCC--CEEeecCCCCceEEEEEECCCCCEEEEEecCCh
Confidence 679999999999999999999999999999999999999999999 777666677898888888766655555544331
Q ss_pred -CCCCCcccchhhHhhhccCCcEEEEcCCc------HHHHHHHHHHHHh-CCCcEEEeCCc-----chHhHHHhhhcCcE
Q 046789 96 -PPMIPDDLSESTIFSALDGARILYLDGRL------PDTAIIVAQEAAR-KNIPILIDTER-----QRERIDEFLKLASY 162 (336)
Q Consensus 96 -~~~~~e~~~~~~~~~~l~~~~~i~~~~~~------~~~~~~~~~~a~~-~~~~v~~d~~~-----~~~~~~~~l~~~di 162 (336)
..+.+++ ...+.++.++++|+++.. .+.+..+++.+++ +++++++|+.. ..+.+.++++++|+
T Consensus 99 ~~~l~~~~----~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~D~~~~~~~~~~~~~~~~l~~~di 174 (296)
T 2qhp_A 99 WDNIPFTD----ELKRLALNTRAVCFGSLAQRNEVSRATINRFLDTMPDIDGQLKIFDINLRQDFYTKEVLRESFKRCNI 174 (296)
T ss_dssp GGCCCCCH----HHHHHHHTEEEEEECSGGGSSHHHHHHHHHHHHHSCCTTSCEEEEECCCCTTCCCHHHHHHHHHHCSE
T ss_pred hhhCCcch----hhHhhhcCCCEEEECChHhcChHHHHHHHHHHHHHHhcCCCEEEEECcCCccccCHHHHHHHHHHCCE
Confidence 2343322 223567899999997653 2455677788776 68999999942 23566788999999
Q ss_pred EecCcccchhhcCC----CChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCC
Q 046789 163 AVCSAKFPQVWTEA----PSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRA 238 (336)
Q Consensus 163 l~~n~~e~~~l~~~----~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (336)
+++|++|+..+++. ....+++++.+....+++.+|+|+|++|+++++.++..
T Consensus 175 l~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~------------------------ 230 (296)
T 2qhp_A 175 LKINDEELVTISRMFGYPGIDLQDKCWILLAKYNLKMLILTCGINGSYVFTPGVVS------------------------ 230 (296)
T ss_dssp EEEEHHHHHHHHHHTTCTTSCHHHHHHHHHHHTTCSEEEEECGGGCEEEEETTEEE------------------------
T ss_pred EECCHHHHHHHhcccCCCCCCHHHHHHHHHHhcCCCEEEEeecCCCeEEEECCeEE------------------------
Confidence 99999999988762 12344455555443488999999999999988654322
Q ss_pred CCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcccc
Q 046789 239 AVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRAL 318 (336)
Q Consensus 239 ~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~ 318 (336)
++| + ++++++|||||||+|.|||+++|++|+++++|+++|+++|+.++++.
T Consensus 231 ~~~--------------------------~---~~v~~vdttGAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~v~~~ 281 (296)
T 2qhp_A 231 FQE--------------------------T---PKVPVADTVGAGDSFTAAFCASILNGKSVPEAHKLAVEVSAYVCTQS 281 (296)
T ss_dssp EEC--------------------------C---CCCCCSCCTTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSS
T ss_pred EeC--------------------------C---CCCccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC
Confidence 334 4 56789999999999999999999999999999999999999999999
Q ss_pred CCccCC
Q 046789 319 GARTSL 324 (336)
Q Consensus 319 g~~~~~ 324 (336)
|+.+.+
T Consensus 282 G~~~~~ 287 (296)
T 2qhp_A 282 GAMPEL 287 (296)
T ss_dssp SSSCCC
T ss_pred CCCCCC
Confidence 987643
No 49
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=1.3e-36 Score=279.85 Aligned_cols=246 Identities=20% Similarity=0.275 Sum_probs=196.7
Q ss_pred CCCCCCCCCce-----EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 4 DPLPPLPENRI-----VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 4 ~~~~p~~~~~~-----~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
++.+| +++.. ...+||++.|+|.++++||.++.++|.+|+| +|+.+++.|++.||+++++...++.+|+.+++
T Consensus 37 ~~~~p-~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D-~G~~i~~~L~~~gV~~~~v~~~~~~~T~~~~~ 114 (306)
T 3bf5_A 37 VDSIP-REGSVNVKDLRPRFGGTAGNFAIVAQKFRIPFDLYSAVGMK-THREYLAMIESMGINTGHVEKFEDESGPICYI 114 (306)
T ss_dssp CSCCC-SSEEEECSEEEEEEEHHHHHHHHHHHHTTCCCEEEEEEETT-TCHHHHHHHHHTTCCCTTEEEETTCCCSEEEE
T ss_pred cCCCC-CCceEECcceEecCCChHHHHHHHHHHcCCCeEEEEEEeCC-hHHHHHHHHHHcCCCchheEecCCCCCceEEE
Confidence 56677 66544 3789999999999999999999999999999 99999999999999999987667778999999
Q ss_pred EEcCCCCeeEEEecCCCC-CCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCcc-----hHh
Q 046789 79 IVDNQMKTRTCIHTPGDP-PMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTERQ-----RER 152 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~-----~~~ 152 (336)
+++. |. |+.+...+.+ .++ +++. +.++++|+++.. ...++++.+++ ++++|+... .+.
T Consensus 115 ~~~~-g~-r~~~~~~ga~~~~~-~~l~--------~~~~~v~~~~~~--~~~~~~~~a~~---~v~~D~~~~~~~~~~~~ 178 (306)
T 3bf5_A 115 ATDG-KK-QVSFMHQGAMAAWA-PQLA--------DEYEYVHFSTGP--NYLDMAKSIRS---KIIFDPSQEIHKYSKDE 178 (306)
T ss_dssp EECS-SC-EEEEEECTHHHHCC-CCCC--------SCEEEEEECSSS--SHHHHHHHCCS---EEEECCGGGGGGSCHHH
T ss_pred EEcC-Ce-eEEEEeCChhhhhh-Hhhc--------CCCCEEEECChH--HHHHHHHHhCC---cEEEcCchhhhhccHHH
Confidence 9986 54 4445444432 344 3332 688999999877 55677777765 899999631 356
Q ss_pred HHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhh
Q 046789 153 IDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQ 232 (336)
Q Consensus 153 ~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (336)
+..+++++|++++|++|+..+++.....+. . . .+|+|+|++|++++..+...
T Consensus 179 ~~~~l~~~dil~~N~~E~~~l~g~~~~~~~------~---l-~vvvT~G~~Ga~~~~~~~~~------------------ 230 (306)
T 3bf5_A 179 LKKFHEISYMSIFNDHEYRVFREMTGLSSP------K---V-TTIVTNGERGSSLFMDGKKY------------------ 230 (306)
T ss_dssp HHHHHHHCSEEEEEHHHHHHHHHHHCCSSC------S---S-CEEEEEGGGEEEEEETTEEE------------------
T ss_pred HHHHHhcCCEEEcCHHHHHHHhCCCCcCcc------c---E-EEEEeecccCeEEEeCCcEE------------------
Confidence 778899999999999999887653221110 1 1 19999999999988654332
Q ss_pred hcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 046789 233 RKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAA 312 (336)
Q Consensus 233 ~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa 312 (336)
++| + ++++ +|||||||+|.|||+++|++|+++++|+++|+++|+
T Consensus 231 ------~~~--------------------------~---~~v~-vDttGAGDaF~ag~~~~l~~g~~~~~a~~~A~~~aa 274 (306)
T 3bf5_A 231 ------DFP--------------------------A---IPSS-GDTVGAGDSFRAGLYLALYNRRSIEKGMIYGTIIAH 274 (306)
T ss_dssp ------EEE--------------------------C---CCCC-SCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ------Eec--------------------------C---CcCC-CCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333 4 5667 999999999999999999999999999999999999
Q ss_pred hhccc--cCCccCCCCCCCcc
Q 046789 313 AGCRA--LGARTSLPHRTDPR 331 (336)
Q Consensus 313 ~~~~~--~g~~~~~p~~~e~~ 331 (336)
.+|++ .|+.+.+|+++|++
T Consensus 275 ~~v~~~~~G~~~~~p~~~ev~ 295 (306)
T 3bf5_A 275 HVIDDGIENFSLNMEDLERET 295 (306)
T ss_dssp HHHHHCSTTCCCCHHHHHHHH
T ss_pred HHhccCCccccccCCCHHHHH
Confidence 99999 99887788888875
No 50
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A*
Probab=100.00 E-value=4.5e-35 Score=277.71 Aligned_cols=251 Identities=22% Similarity=0.296 Sum_probs=198.8
Q ss_pred eEEecCCchHHHHHHHHHc---CCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEE
Q 046789 14 IVVQGGGNAGNALTCAARL---GLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCI 90 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~L---G~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~ 90 (336)
....+||++.|+|.++++| |.++.++|.+|+|.+|+.+++.|++.||+++++. .++.+|+.++++++ + +.|+.+
T Consensus 83 ~~~~~GG~~~NvA~~la~Lg~~g~~v~~ig~vG~D~~G~~i~~~L~~~GV~~~~v~-~~~~~T~~~~~~~~-~-g~r~~~ 159 (383)
T 2abs_A 83 PTSLPGGSALNSVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMV-APGQSTGVCAVLIN-E-KERTLC 159 (383)
T ss_dssp CEEEEESHHHHHHHHHHHHHCSTTSEEEEEEECSSHHHHHHHHHHHHHTCEEEEEE-CTTCCCEEEEEEEE-T-TEEEEE
T ss_pred ceeeCCChHHHHHHHHHHhccCCCcEEEEEEecCChhHHHHHHHHHHcCCceeeee-cCCCCCeEEEEEEc-C-CceeEe
Confidence 3578999999999999999 8999999999999999999999999999999986 45678999999887 4 455555
Q ss_pred ecCCCC-CCCCcccchhhHhhhccCCcEEEEcCCc----HHHHHHHHHHHHh-CCCcEEEeCCcc------hHhHHHhhh
Q 046789 91 HTPGDP-PMIPDDLSESTIFSALDGARILYLDGRL----PDTAIIVAQEAAR-KNIPILIDTERQ------RERIDEFLK 158 (336)
Q Consensus 91 ~~~~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~----~~~~~~~~~~a~~-~~~~v~~d~~~~------~~~~~~~l~ 158 (336)
...+++ .+++++. ..+.++.++++|++++. ++.+..+++.+++ +++++++|+... .+.+.++++
T Consensus 160 ~~~~a~~~l~~~~~----~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~~g~~v~~d~~~~~~~~~~~~~l~~ll~ 235 (383)
T 2abs_A 160 THLGACGSFRLPED----WTTFASGALIFYATAYTLTATPKNALEVAGYAHGIPNAIFTLNLSAPFCVELYKDAMQSLLL 235 (383)
T ss_dssp EECGGGGGCCCCTT----HHHHTTTCCEEEEEGGGGTTCHHHHHHHHHHHHTSTTCEEEEECCCHHHHHHCHHHHHHHHH
T ss_pred eccChhhhCChhhh----hHHHhhcCCEEEEeeecccCCHHHHHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHHHHHHh
Confidence 555433 4666522 33568899999998754 4677789999998 899999999532 245677899
Q ss_pred cCcEEecCcccchhhcCCC----------------ChHHHHHHHHHcC-----C-CCcEEEEeecCCceEEEee-----c
Q 046789 159 LASYAVCSAKFPQVWTEAP----------------SVPSALVSMLLRL-----P-NLRFAIVTLGEDGCIMLER-----S 211 (336)
Q Consensus 159 ~~dil~~n~~e~~~l~~~~----------------~~~~~~~~~l~~~-----~-~~~~vvvt~G~~G~~~~~~-----~ 211 (336)
++|++++|++|+..+++.. ...+++++.+... . +++.||+|+|++|++++.. +
T Consensus 236 ~~dil~pN~~Ea~~L~g~~~~~~~~~~~~s~~~~~~~~~~~a~~l~~~~~~~~~~g~~~VvvT~G~~Ga~~~~~~~~~~~ 315 (383)
T 2abs_A 236 HTNILFGNEEEFAHLAKVHNLVAAEKTALSTANKEHAVEVCTGALRLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTV 315 (383)
T ss_dssp TCSEEEEEHHHHHHHHHHHTCC----------CHHHHHHHHHHHHHHHHTTCCCSSCCEEEEECTTSCEEEEEECTTSCE
T ss_pred hCCEEeCCHHHHHHHhcccCcccccccccccccccccHHHHHHHHHhccccccccCCCEEEEEcCCCCeEEEEeecCCCC
Confidence 9999999999999886421 1223444455442 3 7899999999999998742 2
Q ss_pred cCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHH
Q 046789 212 VNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVL 291 (336)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i 291 (336)
.. .++| +++.++.+++|||||||+|.|||+
T Consensus 316 ~~------------------------~~~~--------------------------~~~v~~~~vvDttGAGDaF~ag~~ 345 (383)
T 2abs_A 316 VV------------------------HEVG--------------------------VPVVAAEKIVDTNGAGDAFVGGFL 345 (383)
T ss_dssp EE------------------------EEEC--------------------------CCCCCGGGCCCCTTHHHHHHHHHH
T ss_pred eE------------------------EEec--------------------------CccCCcCCcCcCCChHHHHHHHHH
Confidence 11 1233 432233479999999999999999
Q ss_pred HHHHhCCChhhHHHHHHHHHHhhccccCCc
Q 046789 292 YALCANMSPEKMLPFAAQVAAAGCRALGAR 321 (336)
Q Consensus 292 ~~l~~g~~l~~al~~a~~~Aa~~~~~~g~~ 321 (336)
++|++|+++++|+++|+++|+.+|++.|+.
T Consensus 346 ~~l~~g~~l~~al~~A~a~aa~~v~~~Ga~ 375 (383)
T 2abs_A 346 YALSQGKTVKQCIMCGNACAQDVIQHVGFS 375 (383)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999985
No 51
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*
Probab=99.84 E-value=1.7e-21 Score=179.24 Aligned_cols=209 Identities=10% Similarity=0.043 Sum_probs=142.3
Q ss_pred CceEEEeecCChhhHHHHHHHHHcCCcccceEEe--CCCCccEEEEEEcCCCCeeEEEecCCCCCCCCcccch--hhHhh
Q 046789 35 NPRIISKIADDPQGKGIREEFEADGVDTSFLVVS--KEGNSPFTYVIVDNQMKTRTCIHTPGDPPMIPDDLSE--STIFS 110 (336)
Q Consensus 35 ~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~--~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~e~~~~--~~~~~ 110 (336)
++.++|.+|+|. |+.+ |++.||+++++... ++ .|++.+ ..+ ..++++++.. +.+..
T Consensus 12 ~~~~~g~vG~D~-g~~i---L~~~GV~~~~v~~~~~~~-~t~~~~--------------~~g-~~l~~~~i~~~~~~~~~ 71 (312)
T 2yxt_A 12 SHVIRGYVGNRA-ATFP---LQVLGFEIDAVNSVQFSN-HTGYAH--------------WKG-QVLNSDELQELYEGLRL 71 (312)
T ss_dssp EEESSSCSTHHH-HHHH---HHHTTCEEEEEEEEEESS-CTTSSC--------------CCE-EECCHHHHHHHHHHHHH
T ss_pred cccCCCccchHh-hHHH---HHHcCCeEEEEEEEEecC-CCCcCC--------------ccC-ccCCHHHHHHHHHHHHh
Confidence 456789999998 9988 99999999987542 21 222111 111 2455555543 11112
Q ss_pred h-ccCCcEEEEcCCcH----HHHHHHHHHHHhCCCc--EEEeCCc---------------chHhHHH-hhhcCcEEecCc
Q 046789 111 A-LDGARILYLDGRLP----DTAIIVAQEAARKNIP--ILIDTER---------------QRERIDE-FLKLASYAVCSA 167 (336)
Q Consensus 111 ~-l~~~~~i~~~~~~~----~~~~~~~~~a~~~~~~--v~~d~~~---------------~~~~~~~-~l~~~dil~~n~ 167 (336)
. +..++++++....+ +.+.++++.+++++.+ +++||.. ..+.+.. +++++|++++|+
T Consensus 72 ~~~~~~~~v~~G~~~~~~~~~~~~~~~~~a~~~g~~~~vv~Dp~~~~~~~~sg~~~~~~~~~~~l~~~ll~~~dil~pN~ 151 (312)
T 2yxt_A 72 NNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPEDLLPVYKEKVVPLADIITPNQ 151 (312)
T ss_dssp TTCCCCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTCEEEECCCCEEC--CCCEESSCTTHHHHHHHTTGGGCSEECCCH
T ss_pred cCCccCCEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEECCCcCCCCCCCCCeeCCHHHHHHHHHHhhhhCCEEcCCH
Confidence 1 67899988754433 3444778888887754 8899741 1124554 789999999999
Q ss_pred ccchhhcCCC----ChHHHHHHHHHcCCCCcEEEEeecCCc------eEEE-------eecc----CCCCchhhhhhhHH
Q 046789 168 KFPQVWTEAP----SVPSALVSMLLRLPNLRFAIVTLGEDG------CIML-------ERSV----NESPELEEIDVDSL 226 (336)
Q Consensus 168 ~e~~~l~~~~----~~~~~~~~~l~~~~~~~~vvvt~G~~G------~~~~-------~~~~----~~~~~~~~~~~~~~ 226 (336)
+|+..+++.. ...+.+++.+.. .+++.||+|+|+.| ++++ ..+. ..
T Consensus 152 ~Ea~~L~g~~~~~~~~~~~~~~~l~~-~g~~~VvvT~G~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~------------ 218 (312)
T 2yxt_A 152 FEAELLSGRKIHSQEEALRVMDMLHS-MGPDTVVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMER------------ 218 (312)
T ss_dssp HHHHHHHSCCCCSHHHHHHHHHHHHH-HSCSEEEECCCSCCCTTCTTEEEEEEEEEC----CCCCEEE------------
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCCceEEEEEeccccccccccccce------------
Confidence 9999998863 223344455544 38999999988864 6654 2211 10
Q ss_pred HHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHh-CCChhhHHH
Q 046789 227 LEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCA-NMSPEKMLP 305 (336)
Q Consensus 227 ~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~-g~~l~~al~ 305 (336)
.++| . +++++ ||+||||+|.|+|+++|++ |+++++|++
T Consensus 219 -----------~~~~--------------------------~---~~v~v-dttGAGDaf~a~~~~~l~~~g~~l~~a~~ 257 (312)
T 2yxt_A 219 -----------IRMD--------------------------I---RKVDA-VFVGTGDLFAAMLLAWTHKHPNNLKVACE 257 (312)
T ss_dssp -----------EEEE--------------------------E---ECCSS-CCSSHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred -----------EEEe--------------------------e---cccCC-CCCCchHHHHHHHHHHHHhcCCCHHHHHH
Confidence 1222 4 45556 9999999999999999999 999999999
Q ss_pred HHHHHHHhhccc
Q 046789 306 FAAQVAAAGCRA 317 (336)
Q Consensus 306 ~a~~~Aa~~~~~ 317 (336)
+|+++++.++++
T Consensus 258 ~A~a~a~~~v~~ 269 (312)
T 2yxt_A 258 KTVSTLHHVLQR 269 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888754
No 52
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Probab=99.83 E-value=1.5e-20 Score=170.62 Aligned_cols=216 Identities=13% Similarity=0.115 Sum_probs=144.3
Q ss_pred cCCCceE-EEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCCCCCCCcccch--hhH
Q 046789 32 LGLNPRI-ISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPPMIPDDLSE--STI 108 (336)
Q Consensus 32 LG~~v~~-i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~e~~~~--~~~ 108 (336)
|+..... +|.+|.| .....|++.||++.++.. . ++.+.++ .+. ..+ ..+.++++.. +.+
T Consensus 19 L~i~~~~~~g~~G~d----~~~~~l~~~Gv~~~~v~t--------~-i~~~~~g-~~~---~~g-~~~~~~~~~~~~~~l 80 (283)
T 2ddm_A 19 VAVQSQVVYGSVGNS----IAVPAIKQNGLNVFAVPT--------V-LLSNTPH-YDT---FYG-GAIPDEWFSGYLRAL 80 (283)
T ss_dssp EEEEEEESSSSSTHH----HHHHHHHHTTCCEEEEEE--------E-EESSCTT-SSC---CCE-EECCHHHHHHHHHHH
T ss_pred EEEecccCCCcchHH----HHHHHHHHcCCeeeEEeE--------E-EeccCCC-cCc---eee-eeCCHHHHHHHHHHH
Confidence 4444333 6666665 345689999999988732 1 2223332 222 111 2344444433 112
Q ss_pred hh--hccCCcEEEEcCCcH----HHHHHHHHHHHh--CCCcEEEeCCcc------------hHhH-HHhhhcCcEEecCc
Q 046789 109 FS--ALDGARILYLDGRLP----DTAIIVAQEAAR--KNIPILIDTERQ------------RERI-DEFLKLASYAVCSA 167 (336)
Q Consensus 109 ~~--~l~~~~~i~~~~~~~----~~~~~~~~~a~~--~~~~v~~d~~~~------------~~~~-~~~l~~~dil~~n~ 167 (336)
.+ .++.++++++....+ +.+.++++.+++ +++++++||... .+.+ ..+++++|++++|.
T Consensus 81 ~~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~a~~~~~g~~vv~Dp~~~~~~~~~~~~~~~~~~~~~~ll~~~dil~pN~ 160 (283)
T 2ddm_A 81 QERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNI 160 (283)
T ss_dssp HHTTCCTTCCEEEECCCSCHHHHHHHHHHHHHHHTTCTTCEEEECCCCEETTTEECSCTTHHHHHHHTTGGGCSEECCBH
T ss_pred HhcCCcccCCEEEECCcCCHHHHHHHHHHHHHHHhcCCCCeEEECCcccCCCCCcccCHHHHHHHHHhhhhhceEecCCH
Confidence 22 456889999976543 455577888877 789999998411 1222 35789999999999
Q ss_pred ccchhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCC-------ceEEEeeccCCCCchhhhhhhHHHHHHhhhcCC
Q 046789 168 KFPQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGED-------GCIMLERSVNESPELEEIDVDSLLEQLKQRKDD 236 (336)
Q Consensus 168 ~e~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (336)
+|+..+++... ..+.+++.+.. .+.+.||+|.|++ |+++++.+...
T Consensus 161 ~E~~~L~g~~~~~~~~~~~~a~~l~~-~g~~~Vvvt~G~~~~~~~~~G~~~~~~~~~~---------------------- 217 (283)
T 2ddm_A 161 FELEILTGKNCRDLDSAIAAAKSLLS-DTLKWVVVTSASGNEENQEMQVVVVTADSVN---------------------- 217 (283)
T ss_dssp HHHHHHHTSCCSSHHHHHHHHHHHCC-SSCCEEEEEC-------CEEEEEEEETTEEE----------------------
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH-cCCCEEEEccccCccCCCceeEEEEeCCceE----------------------
Confidence 99999988641 23444555555 4899999999998 78877644321
Q ss_pred CCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcc
Q 046789 237 RAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCR 316 (336)
Q Consensus 237 ~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~ 316 (336)
++| . ++.. +|++||||+|.|+|+++|++|+++++|+++|+++++.+++
T Consensus 218 --~~~--------------------------~---~~v~-vdt~GAGDaf~a~~~~~l~~g~~~~~A~~~A~a~a~~~v~ 265 (283)
T 2ddm_A 218 --VIS--------------------------H---SRVK-TDLKGTGDLFCAQLISGLLKGKALTDAVHRAGLRVLEVMR 265 (283)
T ss_dssp --EEE--------------------------E---ECCC-CCCCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred --EEe--------------------------e---ceeC-CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 333 3 3344 7999999999999999999999999999999999999998
Q ss_pred ccCC
Q 046789 317 ALGA 320 (336)
Q Consensus 317 ~~g~ 320 (336)
+...
T Consensus 266 ~~~~ 269 (283)
T 2ddm_A 266 YTQQ 269 (283)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7543
No 53
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=99.79 E-value=1.9e-19 Score=163.74 Aligned_cols=151 Identities=16% Similarity=0.056 Sum_probs=111.6
Q ss_pred CCcEEEEcCCc-HHHHHHHHHHHHhCCCc-EEEeCCcc------------hHhHHH-hhhcCcEEecCcccchhhcCC-C
Q 046789 114 GARILYLDGRL-PDTAIIVAQEAARKNIP-ILIDTERQ------------RERIDE-FLKLASYAVCSAKFPQVWTEA-P 177 (336)
Q Consensus 114 ~~~~i~~~~~~-~~~~~~~~~~a~~~~~~-v~~d~~~~------------~~~~~~-~l~~~dil~~n~~e~~~l~~~-~ 177 (336)
.++++++.... .+....+++.+++.+.+ +++||... .+.+.. +++.+|++++|..|+..+++. .
T Consensus 94 ~~~~v~~G~l~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~g~~l~~~~~~~~l~~~ll~~~dil~pN~~Ea~~L~g~~~ 173 (288)
T 1jxh_A 94 RIDTTKIGMLAETDIVEAVAERLQRHHVRNVVLDTVMLAKSGDPLLSPSAIETLRVRLLPQVSLITPNLPEAAALLDAPH 173 (288)
T ss_dssp CCSEEEECCCCSHHHHHHHHHHHHHTTCCSEEEECCCC------CCCHHHHHHHHHHTGGGCSEEECBHHHHHHHHTCCC
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHCCCCeEEEcCcccCCCCCccCCHHHHHHHHHHHHhhCcEEcCCHHHHHHHcCCCC
Confidence 36888886553 35666788889988986 99998421 123443 789999999999999999876 2
Q ss_pred C----hHHHHHHHHHcCCCCcEEEEeecCCc-----eEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhh
Q 046789 178 S----VPSALVSMLLRLPNLRFAIVTLGEDG-----CIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLE 248 (336)
Q Consensus 178 ~----~~~~~~~~l~~~~~~~~vvvt~G~~G-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~ 248 (336)
. ..+++++.+.. .+.+.||+|.|++| ++++..+... ++|
T Consensus 174 ~~~~~~~~~~a~~l~~-~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~------------------------~~~------- 221 (288)
T 1jxh_A 174 ARTEQEMLAQGRALLA-MGCEAVLMKGGHLEDAQSPDWLFTREGEQ------------------------RFS------- 221 (288)
T ss_dssp CCSHHHHHHHHHHHHH-TTCSEEEEBC---------CEEECSSCEE------------------------EC--------
T ss_pred CCCHHHHHHHHHHHHH-hCCCEEEEeccCCCCCceeEEEEECCeEE------------------------EEe-------
Confidence 1 22344555555 38999999999999 7776544321 333
Q ss_pred hhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcccc
Q 046789 249 TRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRAL 318 (336)
Q Consensus 249 ~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~ 318 (336)
. ++.+++||+||||+|.|+|+++|++|+++++|+++|+++++.++++.
T Consensus 222 -------------------~---~~~~~vdttGAGD~f~a~~~a~l~~g~~~~~A~~~A~a~a~~~v~~~ 269 (288)
T 1jxh_A 222 -------------------A---PRVNTKNTHGTGCTLSAALAALRPRHRSWGETVNEAKAWLSAALAQA 269 (288)
T ss_dssp ------------------------CCCCSCCBTHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHTTG
T ss_pred -------------------c---cccCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 3 56678999999999999999999999999999999999999999776
No 54
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2
Probab=99.76 E-value=1.2e-18 Score=155.87 Aligned_cols=151 Identities=14% Similarity=0.100 Sum_probs=113.5
Q ss_pred CCcEEEEcCCcH-HHHHHHHHHHHhCC-CcEEEeCCcc------------hHhH-HHhhhcCcEEecCcccchhhcCCCC
Q 046789 114 GARILYLDGRLP-DTAIIVAQEAARKN-IPILIDTERQ------------RERI-DEFLKLASYAVCSAKFPQVWTEAPS 178 (336)
Q Consensus 114 ~~~~i~~~~~~~-~~~~~~~~~a~~~~-~~v~~d~~~~------------~~~~-~~~l~~~dil~~n~~e~~~l~~~~~ 178 (336)
..+.+++....+ +....+++.+++.+ +++++|+... .+.+ ..+++++|++++|..|+..+++...
T Consensus 70 ~~~~v~~G~l~~~~~~~~~~~~~~~~~~~~vv~Dp~~~~~~g~~l~~~~~~~~~~~~ll~~~dil~pN~~E~~~L~g~~~ 149 (258)
T 1ub0_A 70 PLHAAKTGALGDAAIVEAVAEAVRRFGVRPLVVDPVMVAKSGDPLLAKEAAAALKERLFPLADLVTPNRLEAEALLGRPI 149 (258)
T ss_dssp CCSEEEECCCCSHHHHHHHHHHHHHTTCCSEEECCCC---------CHHHHHHHHHHTGGGCSEECCBHHHHHHHHCSCC
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHhCCCCcEEECCeeecCCCCcccChHHHHHHHHhhcccCeEEeCCHHHHHHHhCCCC
Confidence 467777755433 45567888888888 8999999421 1233 4578999999999999999987632
Q ss_pred ----hHHHHHHHHHcCCCCcEEEEeecCC-c----eEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhh
Q 046789 179 ----VPSALVSMLLRLPNLRFAIVTLGED-G----CIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLET 249 (336)
Q Consensus 179 ----~~~~~~~~l~~~~~~~~vvvt~G~~-G----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~ 249 (336)
..+.+++.+.+ .+.+.||+|.|++ | +++++.+... ++|
T Consensus 150 ~~~~~~~~~a~~l~~-~g~~~vvvt~g~~~G~~~~~~~~~~~~~~------------------------~~~-------- 196 (258)
T 1ub0_A 150 RTLKEAEEAAKALLA-LGPKAVLLKGGHLEGEEAVDLLATRGGVL------------------------RFS-------- 196 (258)
T ss_dssp CSHHHHHHHHHHHHT-TSCSCEEEEEEECC---EEEEEEETTEEE------------------------EEE--------
T ss_pred CCHHHHHHHHHHHHH-cCCCEEEEccCCCCCCceEEEEEeCCeEE------------------------EEe--------
Confidence 23445555655 4889999999998 8 6666543221 233
Q ss_pred hhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcccc
Q 046789 250 RLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRAL 318 (336)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~ 318 (336)
. ++.+++||+||||+|.|+|+++|++|+++++|+++|+++++.++++.
T Consensus 197 ------------------~---~~~~~~dt~GaGD~f~a~~~~~l~~g~~~~~a~~~a~~~~~~~~~~~ 244 (258)
T 1ub0_A 197 ------------------A---PRVHTRNTHGTGCTLSAAIAALLAKGRPLAEAVAEAKAYLTRALKTA 244 (258)
T ss_dssp ------------------E---CCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred ------------------c---cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3 56778999999999999999999999999999999999999888764
No 55
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis}
Probab=99.73 E-value=5.2e-17 Score=146.20 Aligned_cols=151 Identities=14% Similarity=0.116 Sum_probs=115.3
Q ss_pred CCcEEEEcCCc-HHHHHHHHHHHHhCCC-cEEEeCCc------------chHhHH-HhhhcCcEEecCcccchhhcCCC-
Q 046789 114 GARILYLDGRL-PDTAIIVAQEAARKNI-PILIDTER------------QRERID-EFLKLASYAVCSAKFPQVWTEAP- 177 (336)
Q Consensus 114 ~~~~i~~~~~~-~~~~~~~~~~a~~~~~-~v~~d~~~------------~~~~~~-~~l~~~dil~~n~~e~~~l~~~~- 177 (336)
.+|.+++.... ++....+++.+++.+. ++++||.. ..+.+. .+++++|++++|..|+..+++..
T Consensus 74 ~~d~v~~G~l~~~~~~~~~~~~~~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~l~~~ll~~~diltpN~~E~~~L~g~~~ 153 (271)
T 2i5b_A 74 GVDAMKTGMLPTVDIIELAAKTIKEKQLKNVVIDPVMVCKGANEVLYPEHAQALREQLAPLATVITPNLFEASQLSGMDE 153 (271)
T ss_dssp CCSEEEECCCCSHHHHHHHHHHHHHTTCSSEEECCCCSSBCSSSBSSHHHHHHHHHHTGGGCSEECCBHHHHHHHHTCCC
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhCCCCCEEEcCCcCCCCCCcCcCHHHHHHHHHHhHhhCcEEcCCHHHHHHHhCCCC
Confidence 67888886543 3566678888888888 69999831 113444 67899999999999999998865
Q ss_pred C----hHHHHHHHHHcCCCCcEEEEeecC--Cce----EEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchh
Q 046789 178 S----VPSALVSMLLRLPNLRFAIVTLGE--DGC----IMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSL 247 (336)
Q Consensus 178 ~----~~~~~~~~l~~~~~~~~vvvt~G~--~G~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~ 247 (336)
. ..+++++.+.+ .+.+.||+|.|+ +|+ ++++.+... ++|
T Consensus 154 ~~~~~~~~~~a~~l~~-~g~~~Vvvt~g~~~~g~~~~~~~~~~~~~~------------------------~~~------ 202 (271)
T 2i5b_A 154 LKTVDDMIEAAKKIHA-LGAQYVVITGGGKLKHEKAVDVLYDGETAE------------------------VLE------ 202 (271)
T ss_dssp CCSHHHHHHHHHHHHT-TTCSEEEEECGGGSCSSSEEEEEECSSCEE------------------------EEE------
T ss_pred CCCHHHHHHHHHHHHH-hCCCEEEEcCCCCCCCCceEEEEEeCCeEE------------------------EEe------
Confidence 1 23345555655 488999999999 784 554432211 222
Q ss_pred hhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcccc
Q 046789 248 ETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRAL 318 (336)
Q Consensus 248 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~ 318 (336)
. +..+++||+||||+|.|+|+++|++|+++++|+.+|+++++.++++.
T Consensus 203 --------------------~---~~~~~~dt~GaGD~f~a~~~~~l~~g~~~~~A~~~A~~~~~~~~~~~ 250 (271)
T 2i5b_A 203 --------------------S---EMIDTPYTHGAGCTFSAAVTAELAKGAEVKEAIYAAKEFITAAIKES 250 (271)
T ss_dssp --------------------E---CCCCCSCCBTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred --------------------c---cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3 55678999999999999999999999999999999999999999875
No 56
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=99.63 E-value=1e-15 Score=139.09 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=109.6
Q ss_pred ccCCcEEEEcCCcH-----HHHHHHHHHHHhCC--CcEEEeCC----c--------chHhHH-HhhhcCcEEecCcccch
Q 046789 112 LDGARILYLDGRLP-----DTAIIVAQEAARKN--IPILIDTE----R--------QRERID-EFLKLASYAVCSAKFPQ 171 (336)
Q Consensus 112 l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~--~~v~~d~~----~--------~~~~~~-~~l~~~dil~~n~~e~~ 171 (336)
+...|++ ..|+++ +.+.++++.+++++ .++++||. . ..+.+. .+++.+|++++|..|+.
T Consensus 75 l~~~d~v-~~G~l~~~~~~~~v~~~l~~~~~~~~~~~vv~DPVm~~~~~~~~~~~~~~~~l~~~ll~~~diitpN~~E~~ 153 (289)
T 3pzs_A 75 LKDCDAV-LSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVMGHPEKGCIVAPGVAEFFCNEALPASDMIAPNLLELE 153 (289)
T ss_dssp GGGCCEE-EECCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCCCEETTTEECSCHHHHHHHHHTHHHHCSEECCCHHHHH
T ss_pred ccCCCEE-EECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCccccCCCCcccCHHHHHHHHHHhhccCCEEeCCHHHHH
Confidence 3588886 456553 45567777777655 78999982 1 124444 37899999999999999
Q ss_pred hhcCCCC----hHHHHHHHHHcCCCCcEEEEeec-CCce-------EEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCC
Q 046789 172 VWTEAPS----VPSALVSMLLRLPNLRFAIVTLG-EDGC-------IMLERSVNESPELEEIDVDSLLEQLKQRKDDRAA 239 (336)
Q Consensus 172 ~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G-~~G~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (336)
.|++.+. ....+++.+.. .+.+.|++|.| .+|+ ++++.+... +
T Consensus 154 ~L~g~~~~~~~~~~~aa~~l~~-~g~~~Vvvt~~~~~G~~~~~~~~~~~~~~~~~------------------------~ 208 (289)
T 3pzs_A 154 QLSGERVENVEQAVQVARSLCA-RGPKVVLVKHLSRAGYHADCFEMLLVTADDAW------------------------H 208 (289)
T ss_dssp HHHTSCCCSHHHHHHHHHHHHT-TSCSEEEECCCGGGSSCTTEEEEEEECSSCEE------------------------E
T ss_pred HHhCCCCCCHHHHHHHHHHHHH-HCCCEEEEecccCCCCCCCeEEEEEEeCCeEE------------------------E
Confidence 9998642 23445555655 48999999985 4675 544433221 2
Q ss_pred CccccchhhhhhhccCcccccceeeecccccCCCCCc--cccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccc
Q 046789 240 VPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSEL--VDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRA 317 (336)
Q Consensus 240 vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v--vd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~ 317 (336)
++ . +..++ +|++|+||+|.|+|+++|++|+++++|+++|+++++.++++
T Consensus 209 ~~--------------------------~---~~~~~~v~dt~GaGD~f~a~~~~~l~~g~~~~~A~~~A~~~~~~~i~~ 259 (289)
T 3pzs_A 209 IC--------------------------R---PLVDFGKRQPVGVGDLTSGLLLVNLLKGEPLDKALEHVTAAVYEVMLK 259 (289)
T ss_dssp EE--------------------------E---ECCCCTTSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EE--------------------------e---eeecCCCCCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 21 2 33444 89999999999999999999999999999999998888776
Q ss_pred c
Q 046789 318 L 318 (336)
Q Consensus 318 ~ 318 (336)
.
T Consensus 260 t 260 (289)
T 3pzs_A 260 T 260 (289)
T ss_dssp H
T ss_pred H
Confidence 3
No 57
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=99.60 E-value=3.2e-15 Score=135.33 Aligned_cols=165 Identities=13% Similarity=0.068 Sum_probs=115.8
Q ss_pred CCcEEEEcCC-cHHHHHHHHHHHHh-CCCcEEEeCC-----c-c----h---HhHHHhhhcCcEEecCcccchhhcCCC-
Q 046789 114 GARILYLDGR-LPDTAIIVAQEAAR-KNIPILIDTE-----R-Q----R---ERIDEFLKLASYAVCSAKFPQVWTEAP- 177 (336)
Q Consensus 114 ~~~~i~~~~~-~~~~~~~~~~~a~~-~~~~v~~d~~-----~-~----~---~~~~~~l~~~dil~~n~~e~~~l~~~~- 177 (336)
..|.+.+... .++....+.+..++ .+.++++||+ . + . +.+.++++.+|++++|..|+..+++.+
T Consensus 74 ~~daik~G~l~s~~~i~~v~~~l~~~~~~~vv~DPv~~~~g~l~~l~~~~~~~~l~~ll~~adiitpN~~Ea~~L~g~~~ 153 (282)
T 3h74_A 74 HFDQALIGYVGSVALCQQITTYLEQQTLSLLVVDPVLGDLGQLYQGFDQDYVAAMRQLIQQADVILPNTTEAALLTGAPY 153 (282)
T ss_dssp CCSEEEECCCCSHHHHHHHHHHHHHSCCSEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCCHHHHHHHHTCCC
T ss_pred ccCEEEECCCCCHHHHHHHHHHHHHCCCCcEEEcCeeecCCCCCCCCCHHHHHHHHHHhccCCEECCCHHHHHHHhCCCC
Confidence 6788888443 23444445555544 4688999993 1 1 1 235678999999999999999998864
Q ss_pred ---ChHHHHHHHHHcCCCC-cEEEEeecC----CceEEEe-eccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhh
Q 046789 178 ---SVPSALVSMLLRLPNL-RFAIVTLGE----DGCIMLE-RSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLE 248 (336)
Q Consensus 178 ---~~~~~~~~~l~~~~~~-~~vvvt~G~----~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~ 248 (336)
...+.+++.+....+. +.|++|.|+ .|+++++ .+... ++|
T Consensus 154 ~~~~~~~~aa~~L~~~~g~~~~Vvvt~G~~~~~~g~~~~~~~~~~~------------------------~~~------- 202 (282)
T 3h74_A 154 QVTPDLEVILPALQAQLKTGAHAVITDVQRADQIGCAWLDEAGHVQ------------------------YCG------- 202 (282)
T ss_dssp CSSCCHHHHHHHHHTTSCTTCEECEEEEEETTEEEEEEECTTSCEE------------------------EEE-------
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEecCCCCceEEEEEeCCCeEE------------------------EEE-------
Confidence 2345556666653488 999999985 5676654 22111 222
Q ss_pred hhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccCCccCC-CCC
Q 046789 249 TRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTSL-PHR 327 (336)
Q Consensus 249 ~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g~~~~~-p~~ 327 (336)
. +.. .+|++|+||+|.|+|+++|++|+++++|+++|+++++.+++..-.. .. |.+
T Consensus 203 -------------------~---~~v-~~dt~GaGD~fsaai~a~l~~g~~l~~A~~~A~~~~~~ai~~~~~~-~~g~~~ 258 (282)
T 3h74_A 203 -------------------A---RRL-PGHYNGTGDTLAAVIAGLLGRGYPLAPTLARANQWLNMAVAETIAQ-NRTDDR 258 (282)
T ss_dssp -------------------E---ECC-SSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT-TCSCTT
T ss_pred -------------------e---cCC-CCCCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHhhC-CCCchh
Confidence 3 333 3799999999999999999999999999999999999998764332 23 555
Q ss_pred CCcccc
Q 046789 328 TDPRLA 333 (336)
Q Consensus 328 ~e~~~~ 333 (336)
..+..+
T Consensus 259 ~Gv~~e 264 (282)
T 3h74_A 259 QGVALG 264 (282)
T ss_dssp SCCCCH
T ss_pred cCCcHH
Confidence 555443
No 58
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*
Probab=99.59 E-value=4.4e-15 Score=135.07 Aligned_cols=166 Identities=16% Similarity=0.076 Sum_probs=116.0
Q ss_pred CCcEEEEcCC-c---HHHHHHHHHHHHhCCCcEEEeCCc------ch-------HhHHHhhhcCcEEecCcccchhhcCC
Q 046789 114 GARILYLDGR-L---PDTAIIVAQEAARKNIPILIDTER------QR-------ERIDEFLKLASYAVCSAKFPQVWTEA 176 (336)
Q Consensus 114 ~~~~i~~~~~-~---~~~~~~~~~~a~~~~~~v~~d~~~------~~-------~~~~~~l~~~dil~~n~~e~~~l~~~ 176 (336)
..|.+.+.-. . -+.+.++++.+++.+.++++||.- +. +.+.++++.+|++++|..|+..|++.
T Consensus 77 ~~~aik~G~l~s~~~i~~v~~~l~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~g~ 156 (291)
T 3mbh_A 77 QFDAIYTGYLGSPRQIQIVSDFIKDFRQPDSLIVADPVLGDNGRLYTNFDMEMVKEMRHLITKADVITPNLTELFYLLDE 156 (291)
T ss_dssp CCSEEEECCCSSTTHHHHHHHHHHHHCCTTCEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCBHHHHHHHHTC
T ss_pred ccCEEEECCCCCHHHHHHHHHHHHHhcCCCCcEEECceeeeCCCCCCCCCHHHHHHHHHHhccCCEEeCCHHHHHHHhCC
Confidence 5678877432 1 245556677666678999999931 11 23567899999999999999999886
Q ss_pred CC-------hHHHHHHHHHcCCCCcEEEEeecC-------CceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCcc
Q 046789 177 PS-------VPSALVSMLLRLPNLRFAIVTLGE-------DGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPT 242 (336)
Q Consensus 177 ~~-------~~~~~~~~l~~~~~~~~vvvt~G~-------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~ 242 (336)
+. ..+.+++.+... +.+.|++|.|+ .|+++++.+... ..++|
T Consensus 157 ~~~~~~~~~~~~~aa~~L~~~-g~~~Vvvtgg~~~~~~g~~g~~~~~~~~~~----------------------~~~~~- 212 (291)
T 3mbh_A 157 PYKADSTDEELKEYLRLLSDK-GPQVVIITSVPVHDEPHKTSVYAYNRQGNR----------------------YWKVT- 212 (291)
T ss_dssp CCCSCCCHHHHHHHHHHHHHT-SCSEEEEEEEEETTEEEEEEEEEEETTTTE----------------------EEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHhh-CCCEEEEEeccccCCCCcEEEEEEeCCCCe----------------------EEEEE-
Confidence 52 234455666664 89999999664 456665542110 00222
Q ss_pred ccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccCCcc
Q 046789 243 CISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGART 322 (336)
Q Consensus 243 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g~~~ 322 (336)
. +... +|++|+||+|.|+|+++|++|+++++|+++|++++..++++.-. .
T Consensus 213 -------------------------~---~~~~-~dt~GaGD~f~aai~a~l~~g~~l~~A~~~A~~~~~~ai~~~~~-~ 262 (291)
T 3mbh_A 213 -------------------------C---PYLP-AHYPGTGDTFTSVITGSLMQGDSLPMALDRATQFILQGIRATFG-Y 262 (291)
T ss_dssp -------------------------E---SCCG-GGSTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTT-S
T ss_pred -------------------------e---cccC-CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-c
Confidence 3 3443 89999999999999999999999999999999998888876432 2
Q ss_pred CCCCCCCcccc
Q 046789 323 SLPHRTDPRLA 333 (336)
Q Consensus 323 ~~p~~~e~~~~ 333 (336)
..|.++.+..+
T Consensus 263 ~~~~~~gv~~e 273 (291)
T 3mbh_A 263 EYDNREGILLE 273 (291)
T ss_dssp CCCGGGCSCHH
T ss_pred CCCcccCCcHH
Confidence 34555555543
No 59
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=99.50 E-value=7.7e-14 Score=127.33 Aligned_cols=155 Identities=13% Similarity=0.094 Sum_probs=102.7
Q ss_pred cCCcEEEEcCCcH-----HHHHHHHHHHHhCC------CcEEEeCC-----------cchHhHHHhhhcCcEEecCcccc
Q 046789 113 DGARILYLDGRLP-----DTAIIVAQEAARKN------IPILIDTE-----------RQRERIDEFLKLASYAVCSAKFP 170 (336)
Q Consensus 113 ~~~~~i~~~~~~~-----~~~~~~~~~a~~~~------~~v~~d~~-----------~~~~~~~~~l~~~dil~~n~~e~ 170 (336)
..+|++.+ |+++ +.+.++++..++.+ .++++||. ...+.+.++++.+|++++|..|+
T Consensus 75 ~~~daV~t-G~l~s~~~i~~v~~~l~~~k~~~~~~~~~~~vv~DPVm~d~G~~~~~~~~~~~~~~Ll~~adiitPN~~Ea 153 (300)
T 3zs7_A 75 SNYRYILT-GYINNVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDDGIMYCKKEVLDAYRELVPLADIVTPNYFEA 153 (300)
T ss_dssp GGCSEEEE-CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCCC---------CTHHHHHHHHGGGCSEECCCHHHH
T ss_pred ccCCEEEE-CCCCCHHHHHHHHHHHHHHHhhCcCcCCCceEEEccccccCCCeecCHHHHHHHHHHhhhCCEecCCHHHH
Confidence 46787665 6653 34446666665544 78999992 12234566889999999999999
Q ss_pred hhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCc----e--EEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCC
Q 046789 171 QVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDG----C--IMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAV 240 (336)
Q Consensus 171 ~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 240 (336)
+.|++.+. ..+.+++.+... +++.||+|.|+.| . +++......
T Consensus 154 ~~L~g~~~~~~~~~~~aa~~L~~~-G~~~Vvvt~g~~g~~~~~~~~l~~~~~~~-------------------------- 206 (300)
T 3zs7_A 154 SLLSGVTVNDLSSAILAADWFHNC-GVAHVIIKSFREQENPTHLRFLYSVKEGS-------------------------- 206 (300)
T ss_dssp HHHHSSCCCSHHHHHHHHHHHHHH-TCSEEEEEEEC---CCSEEEEEEEECCST--------------------------
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHh-CCCEEEEecCcCCCCCceEEEEEeccccc--------------------------
Confidence 99998642 233445555553 9999999999987 1 232221000
Q ss_pred ccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccc
Q 046789 241 PTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRA 317 (336)
Q Consensus 241 p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~ 317 (336)
...+..+..+. +..+. +++|+||+|.|+|+++| +|+++++|+++|.+....+++.
T Consensus 207 -----------------~~~~~~~~~~~---~~v~~-~~~GtGD~fsaal~a~l-~g~~~~~Av~~A~~~v~~~i~~ 261 (300)
T 3zs7_A 207 -----------------EAAVRRFSGVV---PYHEG-RYTGTGDVFAACLLAFS-HSHPMDVAIGKSMAVLQELIIA 261 (300)
T ss_dssp -----------------TSCCEEEEEEE---ECCSS-CBTTHHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------cCCCeEEEEEe---ccCCC-CCcCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHH
Confidence 00001111113 34444 89999999999999999 9999999999999996666654
No 60
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A*
Probab=99.34 E-value=6.6e-12 Score=112.89 Aligned_cols=145 Identities=17% Similarity=0.099 Sum_probs=96.9
Q ss_pred hhhccCCcEEEEc-CCcH----HHHHHHHHHHHhCCCcEEEeCC-----cc-hHhHHHhhh--cCcEEecCcccchhhcC
Q 046789 109 FSALDGARILYLD-GRLP----DTAIIVAQEAARKNIPILIDTE-----RQ-RERIDEFLK--LASYAVCSAKFPQVWTE 175 (336)
Q Consensus 109 ~~~l~~~~~i~~~-~~~~----~~~~~~~~~a~~~~~~v~~d~~-----~~-~~~~~~~l~--~~dil~~n~~e~~~l~~ 175 (336)
.+.+..++.+++. |..+ +.+.++++.+++.++|+++|+. .. .+...++++ .+|++++|..|+..|++
T Consensus 53 ~~~~~~a~~lvi~~G~~~~~~~~~~~~~~~~a~~~~~pvVlDp~g~~~~~~~~~~~~~ll~~~~~~vitPN~~E~~~L~g 132 (272)
T 1ekq_A 53 ADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAHTVG 132 (272)
T ss_dssp HHHHHHSSEEEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEECTTBTTBHHHHHHHHHHHHHSCCSEEEECHHHHHHHCC
T ss_pred HHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCcCcccchHHHHHHHHccCCCeEECCCHHHHHHHhC
Confidence 3456678988884 4432 4556778888899999999995 22 122346676 89999999999999987
Q ss_pred CC-C------------hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCcc
Q 046789 176 AP-S------------VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPT 242 (336)
Q Consensus 176 ~~-~------------~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~ 242 (336)
.. . ....+++.+.+. ....|++| |..+ ++.+.+... ++|
T Consensus 133 ~~~~~~~gvd~~~~~~~~~~aa~~l~~~-~~~vVv~~-G~~~-~i~~~~~~~------------------------~~~- 184 (272)
T 1ekq_A 133 VTDWLIKGVDAGEGGGDIIRLAQQAAQK-LNTVIAIT-GEVD-VIADTSHVY------------------------TLH- 184 (272)
T ss_dssp ---------------HHHHHHHHHHHHH-HTSEEEEC-SSSE-EEECSSCEE------------------------EEC-
T ss_pred CCcccccCccCCCCHHHHHHHHHHHHHH-cCCEEEEE-CCCC-EEEeCCEEE------------------------EEc-
Confidence 54 1 122344445443 33455555 8877 443332211 222
Q ss_pred ccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHH
Q 046789 243 CISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQ 309 (336)
Q Consensus 243 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~ 309 (336)
. +...+.|++|+||+|.|.+.+.+.+|.++.+|+.+|..
T Consensus 185 -------------------------~---~~~~~~~ttGaGD~lag~iaa~la~g~~~~~A~~~A~~ 223 (272)
T 1ekq_A 185 -------------------------N---GHKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAIS 223 (272)
T ss_dssp -------------------------C---CCGGGGGSTTHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred -------------------------C---CCccccCccCchHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 2 34456799999999987777777789999999999986
No 61
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=99.17 E-value=7.4e-11 Score=116.16 Aligned_cols=146 Identities=9% Similarity=-0.028 Sum_probs=98.9
Q ss_pred cCCcEEEEcCCcHHH---HHHHHHHHHhCCCcEEEeCCc------------chHhHH-HhhhcCcEEecCcccchhhcCC
Q 046789 113 DGARILYLDGRLPDT---AIIVAQEAARKNIPILIDTER------------QRERID-EFLKLASYAVCSAKFPQVWTEA 176 (336)
Q Consensus 113 ~~~~~i~~~~~~~~~---~~~~~~~a~~~~~~v~~d~~~------------~~~~~~-~~l~~~dil~~n~~e~~~l~~~ 176 (336)
...|.+.+....++. +.++++..++.+.++++||+- ..+.+. .+++.+|++.+|..|+..|++.
T Consensus 90 ~~~daIkiG~ls~~~i~~v~~~l~~~~~~~~~vVlDPvm~a~~g~~l~~~~~~~~l~~~Ll~~a~iitPN~~Ea~~L~g~ 169 (550)
T 3rm5_A 90 MKCNVIKTGMLTAAAIEVLHEKLLQLGENRPKLVVDPVLVATSGSSLAGKDIVSLITEKVAPFADILTPNIPECYKLLGE 169 (550)
T ss_dssp BCCSEEEECSCCHHHHHHHHHHHHHHGGGSCEEEECCCC---------CTTHHHHHHHHTGGGCSEECCBHHHHHHHHSC
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHhcccCCCEEEecceecCCCCcCCCHHHHHHHHHHhhCcceEEecCHHHHHHHhCC
Confidence 377888886654433 334455555558899999941 112234 6789999999999999999886
Q ss_pred C----C--hHHHHHHHHHcCCCCcEEEEeecCCc--------e--EEEe-eccCCCCchhhhhhhHHHHHHhhhcCCCCC
Q 046789 177 P----S--VPSALVSMLLRLPNLRFAIVTLGEDG--------C--IMLE-RSVNESPELEEIDVDSLLEQLKQRKDDRAA 239 (336)
Q Consensus 177 ~----~--~~~~~~~~l~~~~~~~~vvvt~G~~G--------~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (336)
. + ....+++.+....+.+.||+|.|+.+ + +++. .++
T Consensus 170 ~~~i~~~~d~~~aa~~L~~~g~~~~VvvkgG~~~~~g~~~~~~~d~l~~~~~~--------------------------- 222 (550)
T 3rm5_A 170 ERKVNGLQDIFQIAKDLAKITKCSNILVKGGHIPWNDEKEKYITDVLFLGAEQ--------------------------- 222 (550)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHCCSCEEEEECC-------CCEEEEEEEETTTT---------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcccCCCCeEEEEEEEcCCC---------------------------
Confidence 3 1 23445555555433489999998753 2 2332 111
Q ss_pred CccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHH
Q 046789 240 VPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQV 310 (336)
Q Consensus 240 vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~ 310 (336)
+++..+. +..+++|++|+||+|.|+++++|++|+++++|+..|+..
T Consensus 223 ----------------------~~~~~~~---~~v~~~~t~GtGD~fsaaiaa~La~G~~l~eAv~~A~~~ 268 (550)
T 3rm5_A 223 ----------------------KFIIFKG---NFVNTTHTHGTGCTLASAIASNLARGYSLPQSVYGGIEY 268 (550)
T ss_dssp ----------------------EEEEEEE---ECCCCSCCBTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ----------------------eEEEEEe---cCcCCCCCcChhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1111113 455668999999999999999999999999999999963
No 62
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=98.84 E-value=4.8e-09 Score=93.69 Aligned_cols=155 Identities=15% Similarity=0.013 Sum_probs=99.0
Q ss_pred CCCCcccchhhHhhhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCCc-----ch-HhHHHhhh-cCcEEe
Q 046789 97 PMIPDDLSESTIFSALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTER-----QR-ERIDEFLK-LASYAV 164 (336)
Q Consensus 97 ~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~~-----~~-~~~~~~l~-~~dil~ 164 (336)
++..+++++ ..+.++.+|.+++....+ +....+++.+++.++|+++||.. .+ +....+++ ..+++.
T Consensus 41 p~M~~~~~e--~~~~~~~~dalvi~~G~~~~~~~~~~~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~vIT 118 (265)
T 1v8a_A 41 PVMAHAEEE--LEEMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGATKFRTRVSLEILSRGVDVLK 118 (265)
T ss_dssp EEECCCTTT--HHHHHHHCSEEEEECTTCCHHHHHHHHHHHHHHHHHTCCEEEECTTBTTBHHHHHHHHHHHHHCCSEEE
T ss_pred ccccCCHHH--HHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHcCCcEEEcCccccccccCHHHHHHHHHhCCcEEc
Confidence 344444444 445678899999975543 23445677788889999999952 11 22344553 389999
Q ss_pred cCcccchhhcCCC-------------ChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHh
Q 046789 165 CSAKFPQVWTEAP-------------SVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLK 231 (336)
Q Consensus 165 ~n~~e~~~l~~~~-------------~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (336)
+|..|+..|++.. ......++.+.+..+ ..|++| |..+.+ ++.+...
T Consensus 119 PN~~E~~~L~g~~~~~~gvd~~~~~~~~~~~aa~~la~~~~-~~Vvlk-G~~d~i-~~~~~~~----------------- 178 (265)
T 1v8a_A 119 GNFGEISALLGEEGKTRGVDSLEYGEEEAKKLTMNAAREFN-TTVAVT-GAVDYV-SDGRRTF----------------- 178 (265)
T ss_dssp EEHHHHHHHHHHHC----------CHHHHHHHHHHHHHHTT-SEEEEE-SSSEEE-ECSSCEE-----------------
T ss_pred CCHHHHHHHhCCcccccCcCcccccHHHHHHHHHHHHHHhC-cEEEEc-CCCcEE-EcCCEEE-----------------
Confidence 9999999887632 122334555555433 456776 766643 3322211
Q ss_pred hhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHH
Q 046789 232 QRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQV 310 (336)
Q Consensus 232 ~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~ 310 (336)
.++ . ......+++|+||+|.|.+.+.+++|.+ .+|+..|...
T Consensus 179 -------~~~--------------------------~---g~~~~~~~~GtGD~Lsg~iaa~lA~g~~-~~Aa~~a~~~ 220 (265)
T 1v8a_A 179 -------AVY--------------------------N---GHELLGRVTGTGCMVAALTGAFVAVTEP-LKATTSALVT 220 (265)
T ss_dssp -------EEC--------------------------C---CCGGGGGSTTHHHHHHHHHHHHHTTSCH-HHHHHHHHHH
T ss_pred -------EEc--------------------------C---CCcCcCCccChhHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 111 2 2333459999999999999999999999 8887776644
No 63
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans}
Probab=98.49 E-value=1.3e-06 Score=79.52 Aligned_cols=149 Identities=12% Similarity=0.068 Sum_probs=86.2
Q ss_pred HhhhccCCcEEEEcCCcH--H----HHHHHHHHHHhCCCcEEEeCCcchHhHH---Hh-h-hcCcEEecCcccchhhcCC
Q 046789 108 IFSALDGARILYLDGRLP--D----TAIIVAQEAARKNIPILIDTERQRERID---EF-L-KLASYAVCSAKFPQVWTEA 176 (336)
Q Consensus 108 ~~~~l~~~~~i~~~~~~~--~----~~~~~~~~a~~~~~~v~~d~~~~~~~~~---~~-l-~~~dil~~n~~e~~~l~~~ 176 (336)
+.+.+...|.+.+..-+. + .+.++++..+ .++|+++|+... ..+. .+ + +..+++++|..|+..|++.
T Consensus 119 l~~~~~~~dav~IG~Gl~~~~~~~~~v~~~l~~~~-~~~pvVlDa~g~-~ll~~~~~l~L~~~~~viTPN~~E~~~L~g~ 196 (311)
T 3bgk_A 119 LSEQITAADVVLMGPGLAEDDLAQTTFDVVWQAIE-PKQTLIIDGSAI-NLLAKRKPAIWPTKQIILTPHQKEWERLSGL 196 (311)
T ss_dssp HHHHHHHCSEEEECTTCCSSHHHHHHHHHHHHHCC-TTSEEEEETHHH-HHHHHCC-CCCSCSCEEEECCSCC-CTTTCC
T ss_pred HHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHcC-CCCeEEEeCChh-hhhccChhhcCCCCCEEECCcHHHHHHHhCC
Confidence 334556789999976332 2 2233333332 478999999421 1111 11 3 4678999999999999875
Q ss_pred CCh--HHHH-HHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhc
Q 046789 177 PSV--PSAL-VSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRA 253 (336)
Q Consensus 177 ~~~--~~~~-~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~ 253 (336)
... .+.. ....++... ..+|+.-| .+.++++ +... ++.
T Consensus 197 ~~~~~~~d~~~~aa~~l~~-g~~VvlkG-~~~~i~~-~~~~------------------------~~~------------ 237 (311)
T 3bgk_A 197 TIPEQIEAATQTALAHFPK-ETILVAKS-HQTKIYQ-GQKI------------------------GHI------------ 237 (311)
T ss_dssp CSTTCCHHHHHHHHTTSCT-TCEEEECS-SSCEEEE-TTEE------------------------EEE------------
T ss_pred CCCcchhhHHHHHHHHHhc-CCEEEEeC-CCeEEEE-CCEE------------------------EEE------------
Confidence 421 1122 222122111 23444444 4555554 2211 111
Q ss_pred cCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHH-Hh-CCChhhHHHHHHHHHHhhc
Q 046789 254 EGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYAL-CA-NMSPEKMLPFAAQVAAAGC 315 (336)
Q Consensus 254 ~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l-~~-g~~l~~al~~a~~~Aa~~~ 315 (336)
. +.....+++|+||++ +|+++++ ++ |.++.+++.+|..+.+...
T Consensus 238 --------------~---~~~~~~~t~GtGD~L-ag~iaa~lA~~g~~~~eA~~~A~~~~~~ag 283 (311)
T 3bgk_A 238 --------------Q---VGGPYQATGGMGDTL-AGMIAGFVAQFHTDRFEVAAAAVFLHSYIA 283 (311)
T ss_dssp --------------C---CCCGGGCSTTHHHHH-HHHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred --------------C---CCCCCCCCCcHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 2 345567899999997 6666766 58 9999999999977766643
No 64
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=98.42 E-value=5e-06 Score=74.09 Aligned_cols=157 Identities=15% Similarity=0.068 Sum_probs=98.7
Q ss_pred CCCCcccchhhHhhhccCCcEEEEcCCc--H---HHHHHHHHHHHhCCCcEEEeCCc-----c-hHhHHHhh-hcCcEEe
Q 046789 97 PMIPDDLSESTIFSALDGARILYLDGRL--P---DTAIIVAQEAARKNIPILIDTER-----Q-RERIDEFL-KLASYAV 164 (336)
Q Consensus 97 ~~~~e~~~~~~~~~~l~~~~~i~~~~~~--~---~~~~~~~~~a~~~~~~v~~d~~~-----~-~~~~~~~l-~~~dil~ 164 (336)
++..++.++ ..+.++.++.+++..-. + +.....++.+++.++|+++||.. . .+....++ ...+++.
T Consensus 43 P~M~~~~~e--~~e~~~~a~alvIn~G~l~~~~~~~~~~a~~~a~~~~~PvVlDPVg~gas~~r~~~~~~Ll~~~~~VIt 120 (273)
T 3dzv_A 43 PIMADDPRE--FPQMFQQTSALVLNLGHLSQEREQSLLAASDYARQVNKLTVVDLVGYGASDIRNEVGEKLVHNQPTVVK 120 (273)
T ss_dssp EECCCCGGG--HHHHHTTCSEEEEECCSCCHHHHHHHHHHHHHHHHTTCCEEEECTTTTSCHHHHHHHHHHHHTCCSEEE
T ss_pred hhhcCCHHH--HHHHHHHCCeEEEecCCCChHHHHHHHHHHHHHHHcCCcEEEchhhcCCcccCHHHHHHHHhcCCcEEC
Confidence 333344333 55677889999986443 2 34556677788899999999931 1 12223333 3679999
Q ss_pred cCcccchhhcCCCC------------------hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHH
Q 046789 165 CSAKFPQVWTEAPS------------------VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSL 226 (336)
Q Consensus 165 ~n~~e~~~l~~~~~------------------~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~ 226 (336)
+|..|+..|.+... .....++.+.+..+...|++|-+.+ ++++.+..+
T Consensus 121 pN~~E~~~L~g~~~~~~GVds~~~~~~~~~~~d~~~aa~~la~~~~~~~VvlkG~~D--~i~dg~~~~------------ 186 (273)
T 3dzv_A 121 GNLSEMRTFCQLVSHGRGVDGSPLDQSEEAIEELIQALRQQTQKFPQTVFLATGIQD--VLVSQEQVI------------ 186 (273)
T ss_dssp EEHHHHHHHTTCCCC-------CGGGSHHHHHHHHHHHHHHHHHSTTCEEEEESSSE--EEECSSCEE------------
T ss_pred CCHHHHHHHhCCcccccccccccccchhhhhHHHHHHHHHHHHHhCCeEEEEECCee--EEEcCCEEE------------
Confidence 99999999987531 1123445555543436777775432 333322111
Q ss_pred HHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHH
Q 046789 227 LEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPF 306 (336)
Q Consensus 227 ~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~ 306 (336)
.++ . .....-+++|.||++.|.+.+.+..|.++.+|+..
T Consensus 187 ------------~~~--------------------------~---G~~~~~~v~GtGc~Ls~~Iaa~lA~g~~~~~Aa~~ 225 (273)
T 3dzv_A 187 ------------VLQ--------------------------N---GVPELDCFTGTGDLVGALVAALLGEGNAPMTAAVA 225 (273)
T ss_dssp ------------EEC--------------------------C---CCGGGGSSTTHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ------------EeC--------------------------C---CCcccCCcCCchHHHHHHHHHHHhCCCCHHHHHHH
Confidence 111 1 12223457999999999999999999999999887
Q ss_pred HHHH
Q 046789 307 AAQV 310 (336)
Q Consensus 307 a~~~ 310 (336)
|...
T Consensus 226 A~~~ 229 (273)
T 3dzv_A 226 AVSY 229 (273)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 65
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A
Probab=98.33 E-value=2e-06 Score=78.29 Aligned_cols=142 Identities=12% Similarity=0.035 Sum_probs=85.7
Q ss_pred hhhccCCcEEEEcCCcH--H----HHHHHHHHHHhCCCcEEEeCCcchHhHH---Hhh--hcCcEEecCcccchhhcCCC
Q 046789 109 FSALDGARILYLDGRLP--D----TAIIVAQEAARKNIPILIDTERQRERID---EFL--KLASYAVCSAKFPQVWTEAP 177 (336)
Q Consensus 109 ~~~l~~~~~i~~~~~~~--~----~~~~~~~~a~~~~~~v~~d~~~~~~~~~---~~l--~~~dil~~n~~e~~~l~~~~ 177 (336)
...+...+.+.+..-+. + .+.++++..+ .++|+++|+... ..+. .++ +..+++.+|..|+..|++..
T Consensus 106 ~~~~~~~dav~IG~Gl~~~~~~~~~v~~~l~~~~-~~~pvVlDa~g~-~ll~~~~~~l~~~~~~viTPN~~E~~~L~g~~ 183 (310)
T 2r3b_A 106 TNVVEQADVILIGPGLGLDATAQQILKMVLAQHQ-KQQWLIIDGSAI-TLFSQGNFSLTYPEKVVFTPHQMEWQRLSHLP 183 (310)
T ss_dssp HHHHHHCSEEEECTTCCSSHHHHHHHHHHHHHCC-TTCEEEEETHHH-HHHHHTTCCCSSGGGEEEECCHHHHHHHHCCC
T ss_pred HHHhccCCEEEEeCCCCCCHHHHHHHHHHHHhcC-CCCcEEEcCCcc-hhcccchhhhcCCCCEEEcCCHHHHHHHhCCC
Confidence 34556789999975332 2 2233343332 488999999421 1111 122 46789999999999998754
Q ss_pred Ch-----H-HHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhh
Q 046789 178 SV-----P-SALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRL 251 (336)
Q Consensus 178 ~~-----~-~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~ 251 (336)
.. . ..+++.+ +. +|+.-| .+.++++ +... ++.
T Consensus 184 ~~~~~~~~a~~aA~~l----g~--~VvlKG-~~~vi~~-~~~~------------------------~~~---------- 221 (310)
T 2r3b_A 184 IEQQTLANNQRQQAKL----GS--TIVLKS-HRTTIFH-AGEP------------------------FQN---------- 221 (310)
T ss_dssp GGGCCHHHHHHHHHHH----TS--EEEECS-TTCEEEC-SSSC------------------------EEC----------
T ss_pred CCcccchHHHHHHHHh----Cc--EEEEeC-CceEEEE-CCEE------------------------EEE----------
Confidence 21 1 2233333 33 444444 3555554 2221 111
Q ss_pred hccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHH-HhCCChhhHHHHHHHHHHhh
Q 046789 252 RAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYAL-CANMSPEKMLPFAAQVAAAG 314 (336)
Q Consensus 252 ~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l-~~g~~l~~al~~a~~~Aa~~ 314 (336)
. +.....+++|+||++ +|+++++ ++|+++.+++..|..+.+..
T Consensus 222 ----------------~---~g~~~~~t~GtGD~L-ag~Iaa~lA~g~~~~eA~~~A~~~~~~a 265 (310)
T 2r3b_A 222 ----------------T---GGNPGMATGGTGDTL-AGIIAGFLAQFKPTIETIAGAVYLHSLI 265 (310)
T ss_dssp ----------------C---CCCGGGCSTTHHHHH-HHHHHHHHHHSCSSHHHHHHHHHHHHHH
T ss_pred ----------------C---CCCCCCCCCChHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1 344567899999996 6666666 59999999999997766653
No 66
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A
Probab=98.27 E-value=3.2e-06 Score=75.68 Aligned_cols=139 Identities=12% Similarity=0.138 Sum_probs=87.8
Q ss_pred ccCCcEEEEcCCcH--HHHHHHHHHHHhCCCcEEEeCCcchHhHHHhh---hcCcEEecCcccchhhcCCCC-----hHH
Q 046789 112 LDGARILYLDGRLP--DTAIIVAQEAARKNIPILIDTERQRERIDEFL---KLASYAVCSAKFPQVWTEAPS-----VPS 181 (336)
Q Consensus 112 l~~~~~i~~~~~~~--~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~l---~~~dil~~n~~e~~~l~~~~~-----~~~ 181 (336)
++.+|++++.+-+. +...++++.+.+.+.|+++|.....- ..+ ...+++.+|..|+..|++... ...
T Consensus 96 l~~~davviGPGlg~~~~~~~~~~~~l~~~~p~VlDAdal~~---~~l~~~~~~~vlTPN~~E~~~L~g~~~~~~~~d~~ 172 (279)
T 3rpz_A 96 EETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAK---RTYPKREGPVILTPHPGEFFRMTGVPVNELQKKRA 172 (279)
T ss_dssp SSCCSEEEECTTCCCCHHHHHHHHHHTTSSSCEEECGGGCCS---CCCCCCSSCEEECCCHHHHHHHHCCCHHHHTTSHH
T ss_pred ccCCCEEEECCCCCCCHHHHHHHHHHHhhCCCEEEECCccch---hhhhhccCCEEEecCHHHHHHHhCCCccchHHHHH
Confidence 57889999987654 45567888888888999999953221 222 356899999999999988542 222
Q ss_pred HHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccc
Q 046789 182 ALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSG 261 (336)
Q Consensus 182 ~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~ 261 (336)
..++.+.+..+. .|++ -|. +.++++.+... ++.
T Consensus 173 ~aa~~la~~~~~-~Vvl-KG~-~~vi~~~~g~~------------------------~~~-------------------- 205 (279)
T 3rpz_A 173 EYAKEWAAQLQT-VIVL-KGN-QTVIAFPDGDC------------------------WLN-------------------- 205 (279)
T ss_dssp HHHHHHHHHHTS-EEEE-CST-TCEEECTTSCE------------------------EEC--------------------
T ss_pred HHHHHHHHHcCe-EEEE-eCC-CcEEECCCceE------------------------EEe--------------------
Confidence 334444443343 4444 343 33444433221 111
Q ss_pred eeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHH
Q 046789 262 RLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQ 309 (336)
Q Consensus 262 ~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~ 309 (336)
. .......++|+||++.|.+...+.+|.++.+++..|..
T Consensus 206 ------~---~g~~~~at~GtGD~Lag~iaa~lA~g~~~~~A~~~a~~ 244 (279)
T 3rpz_A 206 ------P---TGNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVY 244 (279)
T ss_dssp ------C---CCCGGGCSTTHHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred ------C---CCCCCCCCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 1 23445688999998654444445699999999998864
No 67
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=98.25 E-value=7.8e-06 Score=79.14 Aligned_cols=158 Identities=11% Similarity=0.073 Sum_probs=97.0
Q ss_pred CCCcccchhhHhhhccCCcEEEEcCCcH--HHHHHHHH-HHHhCCCcEEEeCCcchHhHHHhh---hcCcEEecCcccch
Q 046789 98 MIPDDLSESTIFSALDGARILYLDGRLP--DTAIIVAQ-EAARKNIPILIDTERQRERIDEFL---KLASYAVCSAKFPQ 171 (336)
Q Consensus 98 ~~~e~~~~~~~~~~l~~~~~i~~~~~~~--~~~~~~~~-~a~~~~~~v~~d~~~~~~~~~~~l---~~~dil~~n~~e~~ 171 (336)
+++++++. +.+.++.+|.+++.+-+. +...++++ .+++.++|+++|+....-.-.+++ +..+++.+|..|+.
T Consensus 306 ~~~~~~~~--~~~~~~~~davviGpGlg~~~~~~~~~~~~l~~~~~pvVlDadgl~~l~~~ll~~~~~~~vlTPN~~E~~ 383 (502)
T 3rss_A 306 FSLQNLQE--CLELSKDVDVVAIGPGLGNNEHVREFVNEFLKTLEKPAVIDADAINVLDTSVLKERKSPAVLTPHPGEMA 383 (502)
T ss_dssp CCGGGHHH--HHHHHTTCSEEEECTTCCCSHHHHHHHHHHHHHCCSCEEECHHHHHTCCHHHHHHCSSCEEECCCHHHHH
T ss_pred cchhhHHH--HHHHhccCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEeCcccchhcHHHHhccCCCEEEeCCHHHHH
Confidence 44444443 456678999999987543 34444444 455679999999942110002233 45789999999999
Q ss_pred hhcCCCChH----HHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchh
Q 046789 172 VWTEAPSVP----SALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSL 247 (336)
Q Consensus 172 ~l~~~~~~~----~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~ 247 (336)
.|++..... ...++.+.+..+ .+|+..|. +.++++.+.. ++.
T Consensus 384 ~L~g~~~~~~~~d~~aa~~la~~~~--~~VvlKG~-~~vi~~~~~~-------------------------~~~------ 429 (502)
T 3rss_A 384 RLVKKTVGDVKYNYELAEEFAKEND--CVLVLKSA-TTIVTDGEKT-------------------------LFN------ 429 (502)
T ss_dssp HHHTCCHHHHTTCHHHHHHHHHHHT--SEEEECSS-SEEEECSSCE-------------------------EEE------
T ss_pred HHhCCCccchHHHHHHHHHHHHHcC--CEEEEeCC-CeEEEcCCEE-------------------------EEE------
Confidence 998753111 334444444333 34555554 3444443311 111
Q ss_pred hhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhh
Q 046789 248 ETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAG 314 (336)
Q Consensus 248 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~ 314 (336)
. .....++++|+||+|.|.+...+++|.++.+++.+|+..-+..
T Consensus 430 --------------------~---~g~~~~at~GsGD~Lag~iaa~lA~g~~~~~Aa~~A~~~hg~A 473 (502)
T 3rss_A 430 --------------------I---TGNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFA 473 (502)
T ss_dssp --------------------C---CCCGGGSSTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred --------------------C---CCCCccccCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 1 2334568999999887777777779999999999987665554
No 68
>3drw_A ADP-specific phosphofructokinase; AMP, GLYC kinase, magnesium, metal-binding, transferase, structural G PSI-2, protein structure initiative; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A
Probab=97.97 E-value=6.5e-05 Score=71.48 Aligned_cols=155 Identities=14% Similarity=0.069 Sum_probs=88.3
Q ss_pred EEecCCchHHHHHHHHHcCCC-ceEEEeecCChhhHHHHHHHHHcCCcccc-----e---E----EeCCCCccEEEEEEc
Q 046789 15 VVQGGGNAGNALTCAARLGLN-PRIISKIADDPQGKGIREEFEADGVDTSF-----L---V----VSKEGNSPFTYVIVD 81 (336)
Q Consensus 15 ~~~~GG~a~n~a~~l~~LG~~-v~~i~~vG~D~~g~~i~~~l~~~gv~~~~-----i---~----~~~~~~t~~~~~~~~ 81 (336)
+...||.|..+|..|+.+|.+ |.+.+.... +...+.|. -+|-.-. + . ..++...-..+++=-
T Consensus 113 ~~~~GGnA~imAn~La~lg~~~Vi~~~p~~s----k~~~~ll~-~~i~~p~~e~g~l~l~~~~ea~~~~~~~~iH~I~Ey 187 (474)
T 3drw_A 113 EERLGGQAGIIANTLAGLKIRKVIAYTPFLP----KRLAELFK-KGVLYPVVENGELQFKPIQEAYREGDPLKINRIFEF 187 (474)
T ss_dssp EEEEESHHHHHHHHHHHTTCSEEEECCSCCC----HHHHTTSC-TTEEEEEESSSSEEEEEGGGCCCTTCCCCEEEEEEE
T ss_pred eEecCChHHHHHHHHHHcCCCcEEEecCcCC----HHHHHhcC-CcceeecccCCceeecCchhhhccCCCCCcEEEEEc
Confidence 367999999999999999994 777777654 33444442 2121110 0 0 000011122222111
Q ss_pred CCC--------------CeeEEEecCCCC--CC-CCcccchhhHhhhccCCcEEEEcCCc---H------------HHHH
Q 046789 82 NQM--------------KTRTCIHTPGDP--PM-IPDDLSESTIFSALDGARILYLDGRL---P------------DTAI 129 (336)
Q Consensus 82 ~~g--------------~~~~~~~~~~~~--~~-~~e~~~~~~~~~~l~~~~~i~~~~~~---~------------~~~~ 129 (336)
..| .+|+.+.....+ .+ ..+++.. .+.+..+..|.++++|.- . +...
T Consensus 188 ~~G~~~~~~~~~~~aPraNRfI~s~D~~N~~~l~~~e~f~~-~l~e~~~~~d~~vLSGlq~m~~~y~dg~~~~~~l~~~~ 266 (474)
T 3drw_A 188 RKGLKFKLGDETIEIPNSGRFIVSARFESISRIETREDIKP-FLGEIGKEVDGAIFSGYQGLRTKYSDGKDANYYLRRAK 266 (474)
T ss_dssp CTTCEEESSSCEEECCSCEEEEEEECCSGGGCCSCCTTTGG-GHHHHHHHCSEEEECCGGGCCSBCTTSCBHHHHHHHHH
T ss_pred CCCCeeecCCceEEccCCCeEEEEcCCCCHHhccccHHHHH-HHHHhhcCCCEEEEeccccccccccccccHHHHHHHHH
Confidence 111 345555433222 22 2344432 344445579999998863 1 2223
Q ss_pred HHHHHHHhCCCcEEEeCC-----c-chHhHHHhhhcCcEEecCcccchhhcC
Q 046789 130 IVAQEAARKNIPILIDTE-----R-QRERIDEFLKLASYAVCSAKFPQVWTE 175 (336)
Q Consensus 130 ~~~~~a~~~~~~v~~d~~-----~-~~~~~~~~l~~~dil~~n~~e~~~l~~ 175 (336)
+.++..+..+.++-++.. . ....+..+++++|.+.+|++|...+.+
T Consensus 267 e~i~~l~~~~~~iH~E~As~~~~~l~~~i~~~i~p~vDSlGmNEqELa~l~~ 318 (474)
T 3drw_A 267 EDIIEFKEKDVKIHVEFASVQDRKLRKKIITNILPFVDSVGIDEAEIAQILS 318 (474)
T ss_dssp HHHHHHHHTTCEEEEECCCCSCHHHHHHHHHHTGGGSSEEEEEHHHHHHHHH
T ss_pred HHHHHhcCCCCeEEEEeCccccHHHHHHHHHHhcccccccccCHHHHHHHHH
Confidence 455555688999999983 2 224456788999999999999986654
No 69
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3
Probab=97.73 E-value=5.5e-05 Score=72.00 Aligned_cols=151 Identities=12% Similarity=0.100 Sum_probs=87.3
Q ss_pred ecCCchHHHHHHHHHcCCCceE--EEeecCChhhHHHHHHHHHcCCcccceE--E---------eCCCCccEEEEEEcCC
Q 046789 17 QGGGNAGNALTCAARLGLNPRI--ISKIADDPQGKGIREEFEADGVDTSFLV--V---------SKEGNSPFTYVIVDNQ 83 (336)
Q Consensus 17 ~~GG~a~n~a~~l~~LG~~v~~--i~~vG~D~~g~~i~~~l~~~gv~~~~i~--~---------~~~~~t~~~~~~~~~~ 83 (336)
..||.|..+|..++.+|.++.+ ++.+|+ .+.+.|...+|..-... . .........+++=-..
T Consensus 109 ~~GGnA~imAn~la~lg~~~vl~~~~~l~~-----~~~~lf~~~~i~~p~~~~~~~~l~~~~e~~~~~~~~iH~I~Ef~~ 183 (455)
T 1ua4_A 109 RMGGQAGIMANLLGGVYGVPVIVHVPQLSR-----LQANLFLDGPIYVPTLENGEVKLIHPKEFSGDEENCIHYIYEFPR 183 (455)
T ss_dssp EEESHHHHHHHHHTTTTCCCEEECCSCCCH-----HHHTTSCSSSEEEEEEETTEEEEECGGGCSCCCCCCEEEEEEECT
T ss_pred ccCCcHHHHHHHHHHcCCCEEEEeCCCCCH-----HHHHhcCCCCeEeecccCCccccccchhhccCCCCCceEEEEcCC
Confidence 8999999999999999999988 666654 34445542223220000 0 0012223333322222
Q ss_pred C----------CeeEEEecCCCC-CC-CCcccchhhHhhhccCCcEEEEcCCc--H-----H---HHHHHHHHHHhCCCc
Q 046789 84 M----------KTRTCIHTPGDP-PM-IPDDLSESTIFSALDGARILYLDGRL--P-----D---TAIIVAQEAARKNIP 141 (336)
Q Consensus 84 g----------~~~~~~~~~~~~-~~-~~e~~~~~~~~~~l~~~~~i~~~~~~--~-----~---~~~~~~~~a~~~~~~ 141 (336)
| .+|+.+.....+ .+ ..+++. +.+.+.....|.++++|.- + + ..++.++...+.+.+
T Consensus 184 G~~~~~~~aPraNRfI~s~D~~n~~l~~~e~f~-~~l~e~~~~~dl~vlSG~q~l~~~~~~~~~~~~l~~i~~L~~~~~~ 262 (455)
T 1ua4_A 184 GFRVFEFEAPRENRFIGSADDYNTTLFIREEFR-ESFSEVIKNVQLAILSGLQALTKENYKEPFEIVKSNLEVLNEREIP 262 (455)
T ss_dssp TCEETTEECSSCEEEEEECCSSGGGTCCCGGGS-TTHHHHGGGCSEEEECCGGGCCTTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCeecceeccccceeEEecCCCcccCcccHHHH-HHHHhhccCCcEEEEechhcccccchHHHHHHHHHHHHHhcCCCce
Confidence 2 255555443322 22 233333 2345555679999999873 1 1 222222233678899
Q ss_pred EEEeCC-----cc-hHhHHHhhhcCcEEecCcccchhhc
Q 046789 142 ILIDTE-----RQ-RERIDEFLKLASYAVCSAKFPQVWT 174 (336)
Q Consensus 142 v~~d~~-----~~-~~~~~~~l~~~dil~~n~~e~~~l~ 174 (336)
+-++.. .. ...+ .+++++|.+.+|+.|+..+.
T Consensus 263 iH~ElAs~~~~~~~~~i~-~ilp~vDSlGmNE~EL~~l~ 300 (455)
T 1ua4_A 263 VHLEFAFTPDEKVREEIL-NVLGMFYSVGLNEVELASIM 300 (455)
T ss_dssp EEEECCCCCCHHHHHHHH-HHGGGCSEEEECHHHHHHHH
T ss_pred EEEEeCCccCHHHHHHHH-hhhccCcccccCHHHHHHHH
Confidence 999993 22 3344 88999999999999997553
No 70
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=97.52 E-value=0.00079 Score=65.64 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=56.1
Q ss_pred CCCCCcccchhhHhhhccC-CcEEEEcCCc---HHHHHHHHHHHHhCCCcEEEeCCc------chHhHHHhhh--cCcEE
Q 046789 96 PPMIPDDLSESTIFSALDG-ARILYLDGRL---PDTAIIVAQEAARKNIPILIDTER------QRERIDEFLK--LASYA 163 (336)
Q Consensus 96 ~~~~~e~~~~~~~~~~l~~-~~~i~~~~~~---~~~~~~~~~~a~~~~~~v~~d~~~------~~~~~~~~l~--~~dil 163 (336)
.++..+..++ ..+..+. ++.+++..-. .+....+++.+++.++|+++||.. ..+....+++ ..+++
T Consensus 289 sPiM~~~~~E--~~e~~~~~~~alvin~G~l~~~~~~~~a~~~a~~~~~PvVlDPVg~~a~~~r~~~~~~Ll~~~~~~vI 366 (540)
T 3nl6_A 289 SPIMSEIQSE--VNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCI 366 (540)
T ss_dssp EEECCCCHHH--HHHHTTSTTCEEEEESSCSCCHHHHHHHHHHHHTTTCCEEEECTTCTTSHHHHHHHHHHTTSCCCSEE
T ss_pred ChhhcCCHHH--HHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHHcCCCEEEChHHhhcccccHHHHHHHHhhCCCeEE
Confidence 3444444444 5566777 8999986443 356667777888999999999931 2234456666 78999
Q ss_pred ecCcccchhhcCCC
Q 046789 164 VCSAKFPQVWTEAP 177 (336)
Q Consensus 164 ~~n~~e~~~l~~~~ 177 (336)
.+|..|+..|.+..
T Consensus 367 tpN~~E~~~L~g~~ 380 (540)
T 3nl6_A 367 KGNSSEILGLAELN 380 (540)
T ss_dssp EECHHHHHHHTTC-
T ss_pred CCCHHHHHHHhCCC
Confidence 99999999888743
No 71
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3
Probab=97.46 E-value=0.0016 Score=61.89 Aligned_cols=150 Identities=12% Similarity=0.038 Sum_probs=85.4
Q ss_pred ecCCchHHHHHHHHHcCCCceE--EEeecCChhhHHHHHHHHHcCCccc----ceEE--e-----CCCCccEEEEEEcCC
Q 046789 17 QGGGNAGNALTCAARLGLNPRI--ISKIADDPQGKGIREEFEADGVDTS----FLVV--S-----KEGNSPFTYVIVDNQ 83 (336)
Q Consensus 17 ~~GG~a~n~a~~l~~LG~~v~~--i~~vG~D~~g~~i~~~l~~~gv~~~----~i~~--~-----~~~~t~~~~~~~~~~ 83 (336)
..||.|..+|..++.+|.++.+ .+.+| +...+.|..-+|.+- .-.. . .+...-..+++=-..
T Consensus 117 ~mGGnAgimAn~la~lg~~~vl~~~~~~s-----~~~~~l~~~~~i~~p~~~~g~l~~~~~~ea~~~~~~~iH~I~Ey~~ 191 (467)
T 1gc5_A 117 RIGGQAGIMANLLGGVYRIPTIVHVPQNP-----KLQAELFVDGPIYVPVFEGNKLKLVHPKDAIAEEEELIHYIYEFPR 191 (467)
T ss_dssp EEESHHHHHHHHHHHTSCCCEEECCSCCC-----HHHHTTSCSSSEEEEEECSSCEEEECGGGSCCSCCCCEEEEEEECS
T ss_pred ccCccHHHHHHHHHhcCCCEEEEcCCCCC-----HHHHHhcCCCCeeeeeccCCceecccchhhccCCCCcceEEEEcCC
Confidence 8999999999999999999987 44444 344555542223211 0000 0 011122222221112
Q ss_pred C----------CeeEEEecCCCC-CC-CCcccchhhHhhhccCCcEEEEcCCc-----------HH----HHHHHHHHHH
Q 046789 84 M----------KTRTCIHTPGDP-PM-IPDDLSESTIFSALDGARILYLDGRL-----------PD----TAIIVAQEAA 136 (336)
Q Consensus 84 g----------~~~~~~~~~~~~-~~-~~e~~~~~~~~~~l~~~~~i~~~~~~-----------~~----~~~~~~~~a~ 136 (336)
| .+|+.+.....+ .+ ..+++. +.+.+.....|.++++|.- .+ .+.+.++...
T Consensus 192 G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~-~~l~e~~~~~dl~vlSG~q~l~~~y~~g~~~~~~l~~~~~~l~~l~ 270 (467)
T 1gc5_A 192 GFQVFDVQAPRENRFIANADDYNARVYMRREFR-EGFEEITRNVELAIISGLQVLKEYYPDGTTYKDVLDRVESHLNILN 270 (467)
T ss_dssp SCEETTEECSSCEEEEEECCSSTTTTCCCHHHH-HSHHHHHTTCSEEEECCGGGCCSBCTTSCBHHHHHHHHHHHHHHHH
T ss_pred CCeecceeccCCceEEEecCCCCccccccHHHH-HHHHhhccCCCEEEEechhcccCccCCchhHHHHHHHHHHHHHhhc
Confidence 2 356655543322 22 223332 3345556779999998862 11 2223333325
Q ss_pred hCCCcEEEeCC-----c-chHhHHHhhhcCcEEecCcccchhh
Q 046789 137 RKNIPILIDTE-----R-QRERIDEFLKLASYAVCSAKFPQVW 173 (336)
Q Consensus 137 ~~~~~v~~d~~-----~-~~~~~~~~l~~~dil~~n~~e~~~l 173 (336)
+.+.++-++.. . ....+ .+++++|.+.+|++|...+
T Consensus 271 ~~~~~iH~E~As~~~~~l~~~i~-~ilp~vDSlGmNEqELa~l 312 (467)
T 1gc5_A 271 RYNVKSHFEFAYTANRRVREALV-ELLPKFTSVGLNEVELASI 312 (467)
T ss_dssp HTTCEEEEECCCCCCHHHHHHHH-HHGGGCSEEEECHHHHHHH
T ss_pred CCCCeEEEEECCcccHHHHHHHH-hhccccccCccCHHHHHHH
Confidence 68899999983 2 23445 8899999999999999743
No 72
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=97.23 E-value=0.0011 Score=58.44 Aligned_cols=67 Identities=10% Similarity=0.002 Sum_probs=46.6
Q ss_pred hhhccCCcEEEEcCCc--H---HHHHHHHHHHHhCCCcEEEeCC-----c-chHhHHHhh-hcCcEEecCcccchhhcC
Q 046789 109 FSALDGARILYLDGRL--P---DTAIIVAQEAARKNIPILIDTE-----R-QRERIDEFL-KLASYAVCSAKFPQVWTE 175 (336)
Q Consensus 109 ~~~l~~~~~i~~~~~~--~---~~~~~~~~~a~~~~~~v~~d~~-----~-~~~~~~~~l-~~~dil~~n~~e~~~l~~ 175 (336)
.+..+.++.+++..-. + +......+.+++.++|+++||. . ..+...+++ ...+++.+|..|...|.+
T Consensus 51 ~e~~~~a~al~iNiGtl~~~~~~~m~~A~~~A~~~~~PvVLDPVg~gas~~R~~~~~~ll~~~~~vIrgN~sEi~~L~g 129 (265)
T 3hpd_A 51 EEMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGATKFRTRVSLEILSRGVDVLKGNFGEISALLG 129 (265)
T ss_dssp HHHHHHCSEEEEECTTCCHHHHHHHHHHHHHHHHHTCCEEEECTTBTTBHHHHHHHHHHHHHCCSEEEEEHHHHHHHHH
T ss_pred HHHHHHCCeEEEECCCCChHHHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHHHHhcCCcEEcCCHHHHHHHhc
Confidence 3455667777775432 2 3445667888899999999993 1 223344444 578999999999988875
No 73
>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} SCOP: c.72.1.3
Probab=96.99 E-value=0.0017 Score=61.71 Aligned_cols=150 Identities=9% Similarity=-0.009 Sum_probs=84.9
Q ss_pred ecCCchHHHHHHHHHcCCCceE--EEeecCChhhHHHHHHHHHcCCcccce----EEe-------CCCCccEEEEEEcCC
Q 046789 17 QGGGNAGNALTCAARLGLNPRI--ISKIADDPQGKGIREEFEADGVDTSFL----VVS-------KEGNSPFTYVIVDNQ 83 (336)
Q Consensus 17 ~~GG~a~n~a~~l~~LG~~v~~--i~~vG~D~~g~~i~~~l~~~gv~~~~i----~~~-------~~~~t~~~~~~~~~~ 83 (336)
..||.|..+|..++.+|.++.+ .+.+| +...+.|..-+|..-.+ ... .+...-..+++=-..
T Consensus 112 ~mGGnA~imAn~la~lg~~~vl~~~~~~s-----~~~~~l~~~~~i~~p~~~~g~l~l~~~~e~~~~~~~~iH~I~Ey~~ 186 (457)
T 1l2l_A 112 RMGGQVGIMANLLGGVYGIPVIAHVPQLS-----ELQASLFLDGPIYVPTFERGELRLIHPREFRKGEEDCIHYIYEFPR 186 (457)
T ss_dssp EEESHHHHHHHHHTTTSCCCEEECCSSCC-----HHHHHTSCSSSEEEEC------CEECGGGC----CCCEEECCEECT
T ss_pred ccCchHHHHHHHHHHcCCCEEEEcCCCCC-----HHHHHhcCCCCeEeeeccCCceeccCchhhccCCCCcceEEEEcCC
Confidence 8999999999999999999887 44444 34555554222221100 000 001111122211111
Q ss_pred C----------CeeEEEecCCCC-CC-CCcccchhhHhhhccCCcEEEEcCCc-------H---HHHHHHHHHHHhCCCc
Q 046789 84 M----------KTRTCIHTPGDP-PM-IPDDLSESTIFSALDGARILYLDGRL-------P---DTAIIVAQEAARKNIP 141 (336)
Q Consensus 84 g----------~~~~~~~~~~~~-~~-~~e~~~~~~~~~~l~~~~~i~~~~~~-------~---~~~~~~~~~a~~~~~~ 141 (336)
| .+|+.+.....+ .+ ..+++. +.+.+.....|.++++|.- + +...+.++...+.+.+
T Consensus 187 G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~-~~l~e~~~~~d~~vlSG~q~l~~~~~~~~~~~~~~~i~~L~~~~~~ 265 (457)
T 1l2l_A 187 NFKVLDFEAPRENRFIGAADDYNPILYVREEWI-ERFEEIAKRSELAIISGLHPLTQENHGKPIKLVREHLKILNDLGIR 265 (457)
T ss_dssp TCEETTEECSSCEEEEEEECSSGGGTCCCHHHH-HSHHHHHTTCSEEEEECCTTCCTTTCHHHHHHHHHHHHHHHHTTCE
T ss_pred CCeecceecCCCCeEEEEcCCCCCCCcccHHHH-HHHHhhccCCCEEEEeccccccccchhhhHHHHHHHHHHhcCCCCe
Confidence 1 355555443322 22 223332 2345556779999999872 1 1223333333678999
Q ss_pred EEEeCC-----c-chHhHHHhhhcCcEEecCcccchhh
Q 046789 142 ILIDTE-----R-QRERIDEFLKLASYAVCSAKFPQVW 173 (336)
Q Consensus 142 v~~d~~-----~-~~~~~~~~l~~~dil~~n~~e~~~l 173 (336)
+-++.. . ....+ .+++++|.+.+|++|...+
T Consensus 266 iH~E~As~~~~~l~~~i~-~ilp~vDSlGmNEqELa~l 302 (457)
T 1l2l_A 266 AHLEFAFTPDEVVRLEIV-KLLKHFYSVGLNEVELASV 302 (457)
T ss_dssp EEEECCCCSSHHHHHHHH-HHGGGCSEEEECHHHHHHH
T ss_pred EEEEECCcccHHHHHHHH-hhccccccCccCHHHHHHH
Confidence 999983 2 23445 8899999999999999763
No 74
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}
Probab=95.04 E-value=0.015 Score=55.71 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=79.7
Q ss_pred cCCcEEEEcCCcH---HHHHHHHHHHHhCCCcEEEeCCcch-HhHHHhhhcCcEEecCcccchhhcCC-----C--Ch--
Q 046789 113 DGARILYLDGRLP---DTAIIVAQEAARKNIPILIDTERQR-ERIDEFLKLASYAVCSAKFPQVWTEA-----P--SV-- 179 (336)
Q Consensus 113 ~~~~~i~~~~~~~---~~~~~~~~~a~~~~~~v~~d~~~~~-~~~~~~l~~~dil~~n~~e~~~l~~~-----~--~~-- 179 (336)
..++.+++.+-+. ..+.+++ +.+ |+++|..... ..+...++...|+.+|..|+..|++. . +.
T Consensus 291 ~~~~a~~iGPGlG~~~~~l~~~l----~~~-p~VlDADaL~~~~~~~~~~~~~VlTPh~~E~~rL~g~~~~~v~~~~~~~ 365 (475)
T 3k5w_A 291 NLLSAFALGMGLENIPKDFNRWL----ELA-PCVLDAGVFYHKEILQALEKEAVLTPHPKEFLSLLNLVGINISMLELLD 365 (475)
T ss_dssp SSCSEEEECTTCSSCCTTHHHHH----HHS-CEEEEGGGGGSGGGGTTTTSSEEEECCHHHHHHHHHHTSCCCCTTSGGG
T ss_pred cCCCEEEEcCCCCCCHHHHHHHH----hcC-CEEEECcccCCchhhhccCCCEEECCCHHHHHHHhCCccCCCCcchhHH
Confidence 6778888865432 1122233 234 9999985321 12223345568999999999988753 1 11
Q ss_pred -HHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCccc
Q 046789 180 -PSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGT 258 (336)
Q Consensus 180 -~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~ 258 (336)
....++.+.+..+-..|++|-+. .+++..+..
T Consensus 366 d~~~aa~~la~~~g~~~VvlKG~~--~vI~~~~~~--------------------------------------------- 398 (475)
T 3k5w_A 366 NKLEIARDFSQKYPKVVLLLKGAN--TLIAHQGQV--------------------------------------------- 398 (475)
T ss_dssp SCC--CHHHHHHCTTEEEEECSSS--EEEEETTEE---------------------------------------------
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCC--CEEECCCEE---------------------------------------------
Confidence 12233444443223455555432 233332111
Q ss_pred ccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhh
Q 046789 259 VSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAG 314 (336)
Q Consensus 259 ~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~ 314 (336)
|.. . .-..-..+.|.||++.|.+..-++++.++.+++..|...-+.+
T Consensus 399 -----~~~-~---~g~~~mat~GtGdvLsg~Iaa~lA~g~~~~~Aa~~a~~lhg~a 445 (475)
T 3k5w_A 399 -----FIN-I---LGSVALAKAGSGDVLAGLILSLLSQNYTPLDAAINASLAHALA 445 (475)
T ss_dssp -----EEE-C---CCCGGGCSTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHG
T ss_pred -----EEE-C---CCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 100 1 1122346799999999998888899999999888776554443
No 75
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=32.57 E-value=46 Score=24.57 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=26.4
Q ss_pred ccccCCchhhhHHHHHHHHHhC-CChhhHHHH
Q 046789 276 LVDTTGAGDAFIGAVLYALCAN-MSPEKMLPF 306 (336)
Q Consensus 276 vvd~tGAGDaF~ag~i~~l~~g-~~l~~al~~ 306 (336)
-.|..|-||..-|-+.|+|++| .+.+|++..
T Consensus 63 R~DKh~kGd~aEA~iAyAWleG~is~eEavei 94 (133)
T 1ztd_A 63 RVDKHAKGDYAEALIAKAWLMGLISEREAVEI 94 (133)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred cccccCccHHHHHHHHHHHHhccccHHHHHHH
Confidence 3588999999999999999998 578887654
No 76
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.07 E-value=82 Score=23.45 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=32.0
Q ss_pred cCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCC
Q 046789 18 GGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGV 60 (336)
Q Consensus 18 ~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv 60 (336)
.||........+..-.....+|+.|.-+..-+.|+++++..|.
T Consensus 7 ~~g~~~~~~~~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~g~ 49 (123)
T 2dha_A 7 GGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCP 49 (123)
T ss_dssp SCCCCHHHHHHHHCCSCCEEEECSCCTTCCHHHHHHHHHTTSC
T ss_pred CCCCchhHHhhccCCCCCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence 4565555555555445567889999888888999999999873
No 77
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=27.27 E-value=2.1e+02 Score=25.47 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=27.0
Q ss_pred hhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEE
Q 046789 110 SALDGARILYLDGRLPDTAIIVAQEAARKNIPILI 144 (336)
Q Consensus 110 ~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~ 144 (336)
+.++++|+++.+....+....+-+.+++.++|++.
T Consensus 121 ~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~ 155 (346)
T 1y8q_A 121 SFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFT 155 (346)
T ss_dssp HHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 45688999988777777766777888888887653
No 78
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=26.96 E-value=79 Score=21.76 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=31.6
Q ss_pred CceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCC----ccEEEEEE
Q 046789 35 NPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGN----SPFTYVIV 80 (336)
Q Consensus 35 ~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~----t~~~~~~~ 80 (336)
++.+|+.|..+..-+.|++.+++.|..+..+.+..+.. .++.++.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F 51 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEF 51 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEe
Confidence 46789999988888999999999996555544433322 24455544
No 79
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=26.86 E-value=2.8e+02 Score=23.18 Aligned_cols=36 Identities=3% Similarity=-0.036 Sum_probs=25.7
Q ss_pred hhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEE
Q 046789 109 FSALDGARILYLDGRLPDTAIIVAQEAARKNIPILI 144 (336)
Q Consensus 109 ~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~ 144 (336)
.+.++++|+++.+...++....+.+.+++.+++++.
T Consensus 116 ~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~ 151 (249)
T 1jw9_B 116 AALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVS 151 (249)
T ss_dssp HHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 355788999988766666656677777777777543
No 80
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=26.36 E-value=2.9e+02 Score=23.15 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=24.0
Q ss_pred hhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEE
Q 046789 109 FSALDGARILYLDGRLPDTAIIVAQEAARKNIPIL 143 (336)
Q Consensus 109 ~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~ 143 (336)
.+.++++|+++.+....+....+-+.+++.++|++
T Consensus 113 ~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i 147 (251)
T 1zud_1 113 KDAVARADVVLDCTDNMATRQEINAACVALNTPLI 147 (251)
T ss_dssp HHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhcCCEEEECCCCHHHHHHHHHHHHHhCCCEE
Confidence 35577899988765555555556667777888754
No 81
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=25.34 E-value=29 Score=26.59 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=31.4
Q ss_pred CCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCccc
Q 046789 19 GGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTS 63 (336)
Q Consensus 19 GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~ 63 (336)
+|.+...+..|+..|+++.+.+.+|... ++.|++ ||++-
T Consensus 65 ~g~g~~~~~~L~~~gv~~VI~g~iG~~a-----~~~L~~-GI~v~ 103 (136)
T 2re2_A 65 AARGVFMLKSALDHGANALVLSEIGSPG-----FNFIKN-KMDVY 103 (136)
T ss_dssp SCHHHHHHHHHHHTTCSEEEESCCBHHH-----HHHHTT-TSEEE
T ss_pred CCccHHHHHHHHHcCCCEEEECCCCHhH-----HHHHHC-CCEEE
Confidence 5777788888999999999999987643 478888 99854
No 82
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=24.98 E-value=1.2e+02 Score=21.99 Aligned_cols=46 Identities=7% Similarity=0.091 Sum_probs=32.9
Q ss_pred ceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEc
Q 046789 36 PRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVD 81 (336)
Q Consensus 36 v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~ 81 (336)
..+|+.|..+..-+.|++.+++.|..+..+.+......++.++.+.
T Consensus 30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~ 75 (111)
T 2jvr_A 30 RITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFP 75 (111)
T ss_dssp EEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEES
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEEC
Confidence 5788889888888999999999996555555532334456666554
No 83
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=23.95 E-value=69 Score=27.28 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=29.6
Q ss_pred ecCCchHHHHHHHHHcCCCceEEEeecC---ChhhHHHHHHHHHcCCc
Q 046789 17 QGGGNAGNALTCAARLGLNPRIISKIAD---DPQGKGIREEFEADGVD 61 (336)
Q Consensus 17 ~~GG~a~n~a~~l~~LG~~v~~i~~vG~---D~~g~~i~~~l~~~gv~ 61 (336)
.-||.|+-+|+.|+..|.+|.++- ++. ....+...+.++..|+.
T Consensus 69 NNGGDGlv~AR~L~~~G~~V~v~~-~~~~~~~~~~~~~~~~~~~~g~~ 115 (246)
T 1jzt_A 69 NNGGDGLVCARHLKLFGYNPVVFY-PKRSERTEFYKQLVHQLNFFKVP 115 (246)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEC-CCCCTTCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEE-cCCCCCCHHHHHHHHHHHHcCCc
Confidence 458899999999999999988863 332 12233445566666654
No 84
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=23.33 E-value=91 Score=23.37 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=50.3
Q ss_pred Hhhhc-cCCcEEEEcCCcHHHHHHHH-HHHHhCCCcEEEeCC----cchHhHHHhhhcCcEEecCcccchhhcCCCC-hH
Q 046789 108 IFSAL-DGARILYLDGRLPDTAIIVA-QEAARKNIPILIDTE----RQRERIDEFLKLASYAVCSAKFPQVWTEAPS-VP 180 (336)
Q Consensus 108 ~~~~l-~~~~~i~~~~~~~~~~~~~~-~~a~~~~~~v~~d~~----~~~~~~~~~l~~~dil~~n~~e~~~l~~~~~-~~ 180 (336)
+.+.. -.++.+...|..+...+..+ +..+.+++.++.|+. ..+..+...++.+...++...+. +-+. .+
T Consensus 19 L~~~~~~~~~iI~t~Gsi~~~~l~~I~~~~~~r~VIi~TD~D~~GekIRk~i~~~lp~~~hafi~r~~~----gVE~a~~ 94 (119)
T 2fcj_A 19 VAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRAYR----EVAAAPI 94 (119)
T ss_dssp HHHHBSSCCEEEECCSCCCHHHHHHHHHHTTTSEEEEECCSSHHHHHHHHHHHHHCTTSEEECCCTTTC----STTTSCH
T ss_pred HHHhcCCCCCEEEeCCccCHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHHHCCCCcEEeccCCcc----CcccCCH
Confidence 33444 47788888888766555554 444567888888994 45556667888888888887764 3222 24
Q ss_pred HHHHHHHHc
Q 046789 181 SALVSMLLR 189 (336)
Q Consensus 181 ~~~~~~l~~ 189 (336)
+.+.+.|.+
T Consensus 95 ~~I~~aL~~ 103 (119)
T 2fcj_A 95 WHLAQVLLR 103 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555554
No 85
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=22.59 E-value=3.7e+02 Score=24.47 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=25.0
Q ss_pred cCCcEEEEcCCcHHHHHHHHHHHH----hCCCcEEEeC
Q 046789 113 DGARILYLDGRLPDTAIIVAQEAA----RKNIPILIDT 146 (336)
Q Consensus 113 ~~~~~i~~~~~~~~~~~~~~~~a~----~~~~~v~~d~ 146 (336)
-+...+.+++..++.+...++.|. +.+.|++++.
T Consensus 246 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 246 YGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp GTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 366788999988776666665554 4678998887
No 86
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=20.99 E-value=41 Score=24.68 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=31.8
Q ss_pred CCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCccc
Q 046789 19 GGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTS 63 (336)
Q Consensus 19 GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~ 63 (336)
+|.+...+..|+..|.++.+.+.+|... .+.|++.||++-
T Consensus 48 ~g~g~~~~~~l~~~gv~~vi~~~iG~~a-----~~~L~~~GI~v~ 87 (116)
T 1rdu_A 48 HGTGPKVVQSLVSKGVEYLIASNVGRNA-----FETLKAAGVKVY 87 (116)
T ss_dssp CCSSCSHHHHHHTTTCCEEECSSCCSSC-----HHHHHTTTCEEE
T ss_pred CCccHHHHHHHHHcCCCEEEECCCCHhH-----HHHHHHCCCEEE
Confidence 4556678888888899999999998865 468888898754
No 87
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=20.82 E-value=3e+02 Score=22.97 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=37.7
Q ss_pred ccCCcEEEEcCCc---HHHHHHHHHHHHhCCCcEEEeCCcchHhHHHhhhcCcEEe
Q 046789 112 LDGARILYLDGRL---PDTAIIVAQEAARKNIPILIDTERQRERIDEFLKLASYAV 164 (336)
Q Consensus 112 l~~~~~i~~~~~~---~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~l~~~dil~ 164 (336)
-.++|.+.+.|.. .+.+.++++..++.++|+++.|... ..+.+.+|.++
T Consensus 29 ~~GtD~i~vGGs~gvt~~~~~~~v~~ik~~~~Pvvlfp~~~----~~v~~gaD~~l 80 (228)
T 3vzx_A 29 ESGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAI----EAIVPGFDLYF 80 (228)
T ss_dssp TSSCSEEEECCCSCCCHHHHHHHHHHHTTSSSCEEEECSCG----GGCCSCCSEEE
T ss_pred HcCCCEEEECCcCCCCHHHHHHHHHHhhccCCCEEEeCCCH----HHccccCCEEE
Confidence 4678999998874 5778899999988999999999653 23457777543
Done!