BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046793
         (237 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human
           Aryl-Hydrocarbon Receptor-Interacting Protein (Aip)
          Length = 165

 Score = 33.5 bits (75), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 125 SLKQQVIAIGNGKFPKFYHGTKKSMLFNLLLNFKHPKEIEDILKDEKIQL-PLSLLINVP 183
            ++++VI  G G+ P F  GTK +  +  L    H  +   +L D + +  P+ L+I   
Sbjct: 11  GIQKRVIQEGRGELPDFQDGTKATFHYRTL----HSDDEGTVLDDSRARGKPMELIIGKK 66

Query: 184 VKFKIW 189
            K  +W
Sbjct: 67  FKLPVW 72


>pdb|3QPH|A Chain A, The Three-Dimensional Structure Of Trmb, A Global
           Transcriptional Regulator Of The Hyperthermophilic
           Archaeon Pyrococcus Furiosus In Complex With Sucrose
          Length = 342

 Score = 27.7 bits (60), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 23/134 (17%)

Query: 105 SKNPNCHMGIIYQN--DGIVSLSLKQQVIAIGNGKFPKFYHGTKKSMLFNLLLNFKHPKE 162
           +K  +   GI Y    D I SL L+  V  I     PK Y      + F     F+  KE
Sbjct: 35  AKEISTKSGIPYNRVYDTISSLKLRGFVTEIEGT--PKVYAAYSPRIAF-----FRFKKE 87

Query: 163 IEDILKDEKIQLPLSLLINVPVKFKIWLVKSWRMKIVIRCEMTISA------------FA 210
           +EDI+K  K+++ L+ +     +  IW  +S+   I +  E   SA            F 
Sbjct: 88  LEDIMK--KLEIELNNVKKEEQRPAIWRSRSFDEAIEMFRESLYSAKNEVIVVTPSEFFE 145

Query: 211 KVQDTFIEFLRRHV 224
            +++  I+ L R V
Sbjct: 146 TIREDLIKTLERGV 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,795,879
Number of Sequences: 62578
Number of extensions: 202606
Number of successful extensions: 589
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 2
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)