BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046793
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
Length = 219
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 19/208 (9%)
Query: 35 NSSNDDANISFTFLLLWVSLLLFIVALILLLIFIIFLFVVRPKGPKYYIDNL-IPI---N 90
N+ N+D +S + F L L +++ +R PK I N IP +
Sbjct: 2 NNQNEDTEGGRNCCTCCLSFI-FTAGLTSLFLWL----SLRADKPKCSIQNFFIPALGKD 56
Query: 91 QSSYYDVIYNFSIRSKNPNCHMGIIYQN-----DGIVSLSLKQQVIA-IGNGKFPKFYHG 144
+S + NF +R NPN GI Y + I + + + +GN PKFY G
Sbjct: 57 PNSRDNTTLNFMVRCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQG 116
Query: 145 -TKKSMLFNLLLNFKHPKEIEDILKDEKIQLPLSLLINVPVKFKIWLVKSWRMKIVIRCE 203
KK+ + + + + +L + L L V K W K + +++ E
Sbjct: 117 HKKKAKKWGQVKPLNNQTVLRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVE 176
Query: 204 MTISAFAKVQDTFIEFLRRHVDSCIILR 231
+ K Q I+ + DS LR
Sbjct: 177 VNGDG-VKAQKKGIKM--KKSDSSFPLR 201
>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1
Length = 416
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 90 NQSSYYDVIYNFSIRSKNPNCHMGIIYQNDGIVSLSLKQQVIAIGNGKFPKFYHGTKKSM 149
N + Y + N SIR N +GI Y + Q++ A+ P FY G+K +M
Sbjct: 24 NNNLQYSLSLNLSIR--NSKSSIGIHYDRFEATVYYMNQRLGAV---PMPLFYLGSKNTM 78
Query: 150 LFN--------LLLNFKHPKEIEDILKDEKIQLPLSLLINVPVKFKIWLVK--SWRMKIV 199
L +LL K+ ED K ++ + L IN F++ ++ +W MK V
Sbjct: 79 LLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSIN----FRVMVLHLVTWPMKPV 134
Query: 200 IRCEMTI 206
+RC + I
Sbjct: 135 VRCHLKI 141
>sp|O97628|AIP_CHLAE AH receptor-interacting protein OS=Chlorocebus aethiops GN=AIP PE=2
SV=1
Length = 330
Score = 34.3 bits (77), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 117 QNDGIVSLSLKQQVIAIGNGKFPKFYHGTKKSMLFNLLLNFKHPKEIEDILKDEKIQ-LP 175
+ DGI +++VI G G+ P F GTK + + L H +L D +++ P
Sbjct: 9 REDGI-----QKRVIQEGRGELPDFQDGTKATFHYRTL----HSDNEGTVLDDSRVRGKP 59
Query: 176 LSLLINVPVKFKIW 189
+ L+I K +W
Sbjct: 60 MELIIGKKFKLPVW 73
>sp|O00170|AIP_HUMAN AH receptor-interacting protein OS=Homo sapiens GN=AIP PE=1 SV=2
Length = 330
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 117 QNDGIVSLSLKQQVIAIGNGKFPKFYHGTKKSMLFNLLLNFKHPKEIEDILKDEKIQ-LP 175
+ DGI +++VI G G+ P F GTK + + L H + +L D + + P
Sbjct: 9 REDGI-----QKRVIQEGRGELPDFQDGTKATFHYRTL----HSDDEGTVLDDSRARGKP 59
Query: 176 LSLLINVPVKFKIW 189
+ L+I K +W
Sbjct: 60 MELIIGKKFKLPVW 73
>sp|Q5FWY5|AIP_RAT AH receptor-interacting protein OS=Rattus norvegicus GN=Aip PE=1
SV=1
Length = 330
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 117 QNDGIVSLSLKQQVIAIGNGKFPKFYHGTKKSMLFNLLLNFKHPKEIEDILKDEKIQLPL 176
+ DGI +++VI G G+ P+F GTK + F L + I+D K P+
Sbjct: 9 REDGI-----QKRVIQEGRGELPEFQDGTKATFHFRTLHSDPEGSVIDDSRARGK---PM 60
Query: 177 SLLINVPVKFKIW 189
L+I K +W
Sbjct: 61 ELIIGKKFKLPVW 73
>sp|Q7YRC1|AIP_BOVIN AH receptor-interacting protein OS=Bos taurus GN=AIP PE=2 SV=1
Length = 330
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 117 QNDGIVSLSLKQQVIAIGNGKFPKFYHGTKKSMLFNLLLNFKHPKEIEDILKDEKIQ-LP 175
+ DGI +++VI G G P F GTK + + L + E +L D +++ P
Sbjct: 9 REDGI-----QKRVIQEGRGALPDFQDGTKATFHYRTLCS----DEEGAVLDDSRVRGKP 59
Query: 176 LSLLINVPVKFKIW 189
+ L+I K +W
Sbjct: 60 MELIIGKKFKLPVW 73
>sp|O35075|DSCR3_MOUSE Down syndrome critical region protein 3 homolog OS=Mus musculus
GN=Dscr3 PE=2 SV=1
Length = 297
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 103 IRSKNPNCHMGIIYQNDGIVSLSLKQQVIAIGNGKFPKFYHGTKKSMLFNLLLNFKHPKE 162
I SK+ H G+ +G V+L L + + G F FY+ K + N ++ P +
Sbjct: 28 ISSKDSVQHQGVSLTMEGTVNLQLSAKSV----GVFEAFYNSVKPIQIINSTIDVLKPGK 83
Query: 163 IEDILKDEKIQLPLSLLINVPVKFKIWLVKSWRMKIVIRCEMTISAFAKVQDTFIEFL 220
I + + PL L+ V ++ + ++ +RC+M S AK EF+
Sbjct: 84 IPSGKTEVPFEFPL-LVKGSKVLYETYHGVFVNIQYTLRCDMRRSLLAKDLTKTCEFI 140
>sp|O08915|AIP_MOUSE AH receptor-interacting protein OS=Mus musculus GN=Aip PE=1 SV=1
Length = 330
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 117 QNDGIVSLSLKQQVIAIGNGKFPKFYHGTKKSMLFNLLLNFKHPKEIEDILKDEKIQLPL 176
+ DGI +++VI G G+ P F GTK + F L + I+D K P+
Sbjct: 9 REDGI-----QKRVIQEGRGELPDFQDGTKATFHFRTLHSDNEGSVIDDSRTRGK---PM 60
Query: 177 SLLINVPVKFKIW 189
L++ K +W
Sbjct: 61 ELIVGKKFKLPVW 73
>sp|P47508|SYL_MYCGE Leucine--tRNA ligase OS=Mycoplasma genitalium (strain ATCC 33530 /
G-37 / NCTC 10195) GN=leuS PE=3 SV=1
Length = 792
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 125 SLKQQVIAIGNGKFPKFYHGTKKSMLFNLLLNFKHPKEIEDILKD--EKIQLPLSLLINV 182
+ K +VI NGKF TK S+ ++L +FK KEI DIL E++ +INV
Sbjct: 729 TAKTKVILSINGKFKAAKEFTKGSLEIDVLESFKQDKEINDILNQPIERVVYVQDRIINV 788
Query: 183 PVK 185
+K
Sbjct: 789 LLK 791
>sp|O14972|DSCR3_HUMAN Down syndrome critical region protein 3 OS=Homo sapiens GN=DSCR3
PE=2 SV=1
Length = 297
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 103 IRSKNPNCHMGIIYQNDGIVSLSLKQQVIAIGNGKFPKFYHGTKKSMLFNLLLNFKHPKE 162
I SK+ H G+ +G V+L L + + G F FY+ K + N + P +
Sbjct: 28 ISSKDSVQHQGVSLTMEGTVNLQLSAKSV----GVFEAFYNSVKPIQIINSTIEMVKPGK 83
Query: 163 IEDILKDEKIQLPLSLLINVPVKFKIWLVKSWRMKIVIRCEMTISAFAKVQDTFIEFL 220
+ + PL L N V ++ + ++ +RC+M S AK EF+
Sbjct: 84 FPSGKTEIPFEFPLHLKGN-KVLYETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFI 140
>sp|Q552C6|ZAK2_DICDI Dual specificity protein kinase zak2 OS=Dictyostelium discoideum
GN=zak2 PE=1 SV=1
Length = 635
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 160 PKEIEDILKDEKIQLPLSLLINVPVKFKIWLVKSW 194
PKE+ ++ DEK+ + NVP+KFK + + W
Sbjct: 525 PKEMASMVSDEKLNYRPQIPFNVPLKFKELITQCW 559
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.143 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,958,450
Number of Sequences: 539616
Number of extensions: 3193275
Number of successful extensions: 10842
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10831
Number of HSP's gapped (non-prelim): 19
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)