Query 046793
Match_columns 237
No_of_seqs 174 out of 764
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:32:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 5.3E-34 1.1E-38 245.6 24.2 172 41-226 33-217 (219)
2 PF03168 LEA_2: Late embryogen 99.3 7.9E-12 1.7E-16 93.5 7.9 97 102-203 1-100 (101)
3 smart00769 WHy Water Stress an 98.2 1.6E-05 3.6E-10 60.1 10.2 83 94-181 12-97 (100)
4 COG5608 LEA14-like dessication 97.4 0.011 2.5E-07 48.1 14.1 100 77-181 31-135 (161)
5 PF12751 Vac7: Vacuolar segreg 97.1 0.0033 7.1E-08 58.2 9.7 87 40-132 295-381 (387)
6 PF07092 DUF1356: Protein of u 97.1 0.024 5.2E-07 49.5 14.1 79 76-158 98-182 (238)
7 PLN03160 uncharacterized prote 96.7 0.023 5E-07 49.1 10.7 102 35-150 30-147 (219)
8 KOG3950 Gamma/delta sarcoglyca 74.6 49 0.0011 29.4 10.3 22 94-115 105-126 (292)
9 TIGR02588 conserved hypothetic 71.8 15 0.00032 29.0 6.0 51 57-110 10-62 (122)
10 PF10631 DUF2477: Protein of u 69.6 2.2 4.7E-05 33.4 0.9 23 8-33 82-108 (141)
11 PF06072 Herpes_US9: Alphaherp 63.4 2.4 5.2E-05 29.1 0.1 7 65-71 52-58 (60)
12 PRK07021 fliL flagellar basal 61.3 35 0.00077 27.8 6.7 19 113-132 77-95 (162)
13 PRK10893 lipopolysaccharide ex 56.5 94 0.002 26.2 8.6 23 75-97 37-61 (192)
14 PF09911 DUF2140: Uncharacteri 55.8 14 0.0003 31.1 3.4 29 51-79 3-31 (187)
15 PRK07718 fliL flagellar basal 55.6 41 0.00089 26.9 6.0 15 115-130 63-77 (142)
16 PF14155 DUF4307: Domain of un 53.4 1E+02 0.0022 23.7 10.5 7 126-132 72-78 (112)
17 PF09604 Potass_KdpF: F subuni 52.1 13 0.00028 21.1 1.8 20 59-78 5-24 (25)
18 PRK06531 yajC preprotein trans 51.9 9.3 0.0002 29.7 1.6 16 65-80 11-26 (113)
19 KOG4331 Polytopic membrane pro 51.7 12 0.00026 38.4 2.7 27 52-78 153-179 (865)
20 COG5294 Uncharacterized protei 51.7 55 0.0012 25.4 5.7 18 94-111 49-66 (113)
21 COG1580 FliL Flagellar basal b 51.4 58 0.0013 26.8 6.3 26 49-74 17-42 (159)
22 PRK01844 hypothetical protein; 51.2 22 0.00048 25.4 3.3 20 51-70 4-23 (72)
23 PHA02844 putative transmembran 49.4 23 0.0005 25.4 3.1 24 49-72 46-69 (75)
24 PRK13183 psbN photosystem II r 47.8 21 0.00046 23.3 2.5 24 53-76 9-32 (46)
25 COG3671 Predicted membrane pro 47.7 20 0.00042 28.2 2.8 28 48-75 73-103 (125)
26 COG4698 Uncharacterized protei 47.7 20 0.00043 30.3 3.0 22 65-86 25-46 (197)
27 PF02468 PsbN: Photosystem II 47.2 20 0.00043 23.1 2.3 23 54-76 7-29 (43)
28 COG3763 Uncharacterized protei 44.3 32 0.00069 24.5 3.2 20 50-69 3-22 (71)
29 PF09307 MHC2-interact: CLIP, 44.2 7.5 0.00016 30.3 0.0 32 42-75 26-57 (114)
30 TIGR02115 potass_kdpF K+-trans 44.1 10 0.00023 21.7 0.6 20 59-78 4-23 (26)
31 PRK14759 potassium-transportin 43.6 22 0.00048 20.9 1.9 20 59-78 9-28 (29)
32 PRK00523 hypothetical protein; 43.3 35 0.00075 24.4 3.3 20 51-70 5-24 (72)
33 PF05478 Prominin: Prominin; 42.5 36 0.00078 35.0 4.6 21 48-68 140-160 (806)
34 CHL00020 psbN photosystem II p 42.3 24 0.00051 22.7 2.1 24 53-76 6-29 (43)
35 PF12505 DUF3712: Protein of u 42.2 1.6E+02 0.0034 22.7 8.2 66 130-200 2-71 (125)
36 PRK05696 fliL flagellar basal 41.4 59 0.0013 26.7 5.0 26 101-130 76-101 (170)
37 PF05545 FixQ: Cbb3-type cytoc 40.4 27 0.00059 22.6 2.3 20 59-78 15-34 (49)
38 cd01324 cbb3_Oxidase_CcoQ Cyto 39.6 33 0.00071 22.4 2.5 22 57-78 14-35 (48)
39 PHA02819 hypothetical protein; 38.6 35 0.00076 24.3 2.6 25 48-72 43-67 (71)
40 PF10907 DUF2749: Protein of u 38.4 24 0.00052 24.7 1.8 16 62-77 13-28 (66)
41 PF15145 DUF4577: Domain of un 38.3 34 0.00074 26.6 2.8 25 52-76 64-88 (128)
42 PF07787 DUF1625: Protein of u 38.2 42 0.00092 29.2 3.8 13 64-76 236-248 (248)
43 PHA03054 IMV membrane protein; 37.8 35 0.00076 24.3 2.6 25 48-72 45-69 (72)
44 PHA02650 hypothetical protein; 37.6 35 0.00076 24.8 2.6 25 48-72 46-70 (81)
45 PF08113 CoxIIa: Cytochrome c 36.5 33 0.00072 20.8 2.0 14 59-72 11-24 (34)
46 COG2332 CcmE Cytochrome c-type 36.2 2.1E+02 0.0046 23.4 7.2 56 107-170 80-140 (153)
47 PF15050 SCIMP: SCIMP protein 35.5 28 0.00061 27.4 2.0 25 50-75 8-32 (133)
48 PF14654 Epiglycanin_C: Mucin, 34.7 61 0.0013 24.6 3.6 21 53-73 22-42 (106)
49 PHA02975 hypothetical protein; 32.9 45 0.00099 23.6 2.5 25 48-72 41-65 (69)
50 PRK12785 fliL flagellar basal 32.2 1.1E+02 0.0023 25.1 5.1 17 114-131 86-102 (166)
51 PHA03049 IMV membrane protein; 31.9 39 0.00084 23.8 2.0 21 55-75 4-24 (68)
52 PF14283 DUF4366: Domain of un 31.4 27 0.00059 30.2 1.5 10 72-81 181-190 (218)
53 COG4736 CcoQ Cbb3-type cytochr 30.8 35 0.00075 23.6 1.6 14 65-78 21-34 (60)
54 cd07912 Tweety_N N-terminal do 29.4 48 0.001 31.6 2.8 6 48-53 81-86 (418)
55 PF05961 Chordopox_A13L: Chord 29.4 43 0.00094 23.6 1.9 21 55-75 4-24 (68)
56 COG1463 Ttg2C ABC-type transpo 28.9 1.5E+02 0.0034 27.2 6.1 22 55-76 11-32 (359)
57 PF09753 Use1: Membrane fusion 28.4 65 0.0014 28.1 3.4 9 48-56 228-236 (251)
58 PF02009 Rifin_STEVOR: Rifin/s 28.3 39 0.00084 30.7 2.0 23 53-75 258-280 (299)
59 PF06129 Chordopox_G3: Chordop 28.2 1.4E+02 0.0031 23.1 4.7 30 99-129 51-86 (109)
60 PF10177 DUF2371: Uncharacteri 27.7 69 0.0015 25.9 3.1 15 44-58 35-49 (141)
61 PF06092 DUF943: Enterobacteri 27.6 49 0.0011 27.3 2.2 16 61-76 13-28 (157)
62 PF03929 PepSY_TM: PepSY-assoc 27.3 1.1E+02 0.0024 17.5 3.1 11 60-70 16-26 (27)
63 COG5353 Uncharacterized protei 26.0 50 0.0011 27.1 2.0 26 51-76 8-33 (161)
64 PF15330 SIT: SHP2-interacting 25.9 61 0.0013 24.9 2.4 24 51-74 1-25 (107)
65 PF11906 DUF3426: Protein of u 25.8 3.2E+02 0.007 21.3 7.8 37 95-132 66-102 (149)
66 PF09624 DUF2393: Protein of u 25.5 3.4E+02 0.0073 21.4 8.9 61 66-132 33-95 (149)
67 PRK05886 yajC preprotein trans 24.2 43 0.00093 25.9 1.3 14 66-79 14-27 (109)
68 PF00927 Transglut_C: Transglu 23.7 2.7E+02 0.0058 20.5 5.6 60 94-155 12-74 (107)
69 PF04478 Mid2: Mid2 like cell 23.2 57 0.0012 26.8 1.8 42 62-117 63-104 (154)
70 PF13396 PLDc_N: Phospholipase 23.0 1E+02 0.0022 19.3 2.7 25 48-77 22-46 (46)
71 PRK13836 conjugal transfer pro 22.6 1.2E+02 0.0025 26.0 3.8 28 48-75 29-56 (220)
72 PHA02692 hypothetical protein; 22.4 79 0.0017 22.5 2.2 8 49-56 43-50 (70)
73 KOG2927 Membrane component of 21.8 85 0.0018 29.2 2.9 24 52-75 228-251 (372)
74 COG5009 MrcA Membrane carboxyp 21.7 74 0.0016 32.7 2.6 33 50-82 6-38 (797)
75 PRK14740 kdbF potassium-transp 21.6 1.1E+02 0.0024 17.9 2.3 19 60-78 10-28 (29)
76 PRK15231 fimbrial adhesin prot 21.6 2.8E+02 0.006 22.6 5.4 49 143-191 87-139 (150)
77 PF12505 DUF3712: Protein of u 21.4 2.9E+02 0.0062 21.2 5.5 25 96-121 99-123 (125)
78 PF12321 DUF3634: Protein of u 21.2 71 0.0015 24.7 1.9 18 67-84 10-29 (108)
79 KOG4602 Nanos and related prot 21.1 35 0.00076 30.4 0.3 10 40-49 231-240 (318)
80 PF11395 DUF2873: Protein of u 20.9 1.1E+02 0.0025 19.0 2.4 10 65-74 23-32 (43)
81 PRK15136 multidrug efflux syst 20.8 1E+02 0.0022 28.6 3.3 7 159-165 258-264 (390)
82 PRK14762 membrane protein; Pro 20.8 1.8E+02 0.0039 16.5 3.2 10 49-58 4-13 (27)
83 PRK08455 fliL flagellar basal 20.7 61 0.0013 27.2 1.6 15 115-130 103-117 (182)
84 PF01102 Glycophorin_A: Glycop 20.5 75 0.0016 25.0 2.0 24 52-75 67-90 (122)
85 PF15012 DUF4519: Domain of un 20.3 84 0.0018 21.4 1.9 13 65-77 44-56 (56)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=5.3e-34 Score=245.55 Aligned_cols=172 Identities=14% Similarity=0.178 Sum_probs=140.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhheeeecCCcEEEEeeEEE--EecCC------ceeEEEEEEEEEeCCCcee
Q 046793 41 ANISFTFLLLWVSLLLFIVALILLLIFIIFLFVVRPKGPKYYIDNLIP--INQSS------YYDVIYNFSIRSKNPNCHM 112 (237)
Q Consensus 41 ~~~cc~~c~~~~~~~ll~lill~gi~~~i~~lv~rP~~P~f~V~s~~v--~nlss------~ls~~~~ltl~a~NPN~k~ 112 (237)
|++||+ ||+|++++++ ++++++++++|++||||+|+|+|+++++ |++++ .++.+++++++++|||. +
T Consensus 33 r~~~~~-c~~~~~a~~l---~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~ 107 (219)
T PLN03160 33 RRNCIK-CCGCITATLL---ILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-A 107 (219)
T ss_pred cccceE-EHHHHHHHHH---HHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-e
Confidence 344444 5555544333 3355677788999999999999999999 87642 46777888889999998 8
Q ss_pred eEEEeCcEEEEEEeCCeEEeeccCCCCceeecCCCeEEEEEEEEEe---cChhhHHHHhcC--CceEEEEEEEEEEEEEE
Q 046793 113 GIIYQNDGIVSLSLKQQVIAIGNGKFPKFYHGTKKSMLFNLLLNFK---HPKEIEDILKDE--KIQLPLSLLINVPVKFK 187 (237)
Q Consensus 113 ~i~Y~~~~v~v~~Y~g~~Lg~~~~~vP~F~q~~kntt~v~~~l~g~---l~~~~~~~L~~~--~g~V~l~v~~~~~vr~k 187 (237)
+|+|++++++++ |+|+.+| ++.+|+|+|++++++.+++++... +.. ..+|.+| +|.++|++.++.++|++
T Consensus 108 ~~~Y~~~~~~v~-Y~g~~vG--~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~~G~v~l~~~~~v~gkVk 182 (219)
T PLN03160 108 SFKYSNTTTTIY-YGGTVVG--EARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDISSGLLNMNSYTRIGGKVK 182 (219)
T ss_pred eEEEcCeEEEEE-ECCEEEE--EEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhhCCeEEEEEEEEEEEEEE
Confidence 999999999999 9999999 999999999999999999887654 222 2457777 79999999999999999
Q ss_pred EEEEEEeeEEEEEEEEEEEeccccccccccccceeeech
Q 046793 188 IWLVKSWRMKIVIRCEMTISAFAKVQDTFIEFLRRHVDS 226 (237)
Q Consensus 188 vg~~~s~~~~v~V~C~l~V~~~~~~~~~~~~~~~C~v~~ 226 (237)
+|.++++++.++++|++.|+..+ ..++. ++|+.+.
T Consensus 183 v~~i~k~~v~~~v~C~v~V~~~~---~~i~~-~~C~~~~ 217 (219)
T PLN03160 183 ILKIIKKHVVVKMNCTMTVNITS---QAIQG-QKCKRHV 217 (219)
T ss_pred EEEEEEEEEEEEEEeEEEEECCC---CEEec-cEecccc
Confidence 99999999999999999997732 35666 7999874
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.31 E-value=7.9e-12 Score=93.51 Aligned_cols=97 Identities=20% Similarity=0.343 Sum_probs=67.8
Q ss_pred EEEEeCCCceeeEEEeCcEEEEEEeCCeEEeeccCC-CCceeecCCCeEEEEEEEEEecChhhHHHHhcC-CceEEEEEE
Q 046793 102 SIRSKNPNCHMGIIYQNDGIVSLSLKQQVIAIGNGK-FPKFYHGTKKSMLFNLLLNFKHPKEIEDILKDE-KIQLPLSLL 179 (237)
Q Consensus 102 tl~a~NPN~k~~i~Y~~~~v~v~~Y~g~~Lg~~~~~-vP~F~q~~kntt~v~~~l~g~l~~~~~~~L~~~-~g~V~l~v~ 179 (237)
+|+++|||. ++++|++.+++++ |+|..+| .+. .++|+|++++++.+.+.+..+ ..+..+.+.++ ++..++++.
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~-~~g~~v~--~~~~~~~~~i~~~~~~~v~~~v~~~-~~~l~~~l~~~~~~~~~~~v~ 75 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVY-YNGQRVG--TGGSLPPFTIPARSSTTVPVPVSVD-YSDLPRLLKDLLAGRVPFDVT 75 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEE-ESSSEEE--EEEECE-EEESSSCEEEEEEEEEEE-HHHHHHHHHHHHHTTSCEEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEE-ECCEEEE--CccccCCeEECCCCcEEEEEEEEEc-HHHHHHHHHhhhccccceEEE
Confidence 689999998 9999999999999 9999999 664 899999999999998887766 11113333333 355677777
Q ss_pred EEEEEEEEE-EEEEEeeEEEEEEEE
Q 046793 180 INVPVKFKI-WLVKSWRMKIVIRCE 203 (237)
Q Consensus 180 ~~~~vr~kv-g~~~s~~~~v~V~C~ 203 (237)
+++++++++ +.....+..+.++|+
T Consensus 76 ~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 76 YRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEcccceeeeEEEeEEeE
Confidence 777788884 433323344444443
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.23 E-value=1.6e-05 Score=60.08 Aligned_cols=83 Identities=11% Similarity=0.111 Sum_probs=63.6
Q ss_pred ceeEEEEEEEEEeCCCceeeEEEeCcEEEEEEeCCeEEeeccCCCC-ceeecCCCeEEEEEEEEEe--cChhhHHHHhcC
Q 046793 94 YYDVIYNFSIRSKNPNCHMGIIYQNDGIVSLSLKQQVIAIGNGKFP-KFYHGTKKSMLFNLLLNFK--HPKEIEDILKDE 170 (237)
Q Consensus 94 ~ls~~~~ltl~a~NPN~k~~i~Y~~~~v~v~~Y~g~~Lg~~~~~vP-~F~q~~kntt~v~~~l~g~--l~~~~~~~L~~~ 170 (237)
..+.++.++++++|||. ..+.|++.+..++ |+|..+| +|..+ +...++++++.+.+.++-+ ........|.+
T Consensus 12 ~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~-~~g~~v~--~g~~~~~~~ipa~~~~~v~v~~~~~~~~~~~~~~~l~~- 86 (100)
T smart00769 12 GLEIEIVLKVKVQNPNP-FPIPVNGLSYDLY-LNGVELG--SGEIPDSGTLPGNGRTVLDVPVTVNLFLAEALIWHIAN- 86 (100)
T ss_pred ceEEEEEEEEEEECCCC-CccccccEEEEEE-ECCEEEE--EEEcCCCcEECCCCcEEEEEEEEeehhHhHHHHHhhcc-
Confidence 46789999999999996 7999999999999 9999999 99986 7899999999988877665 23333344432
Q ss_pred CceEEEEEEEE
Q 046793 171 KIQLPLSLLIN 181 (237)
Q Consensus 171 ~g~V~l~v~~~ 181 (237)
+..++++++.+
T Consensus 87 ~~~~~y~l~g~ 97 (100)
T smart00769 87 GEEIPYRLDGK 97 (100)
T ss_pred CCCccEEEEEE
Confidence 22455554443
No 4
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.38 E-value=0.011 Score=48.08 Aligned_cols=100 Identities=9% Similarity=-0.029 Sum_probs=71.1
Q ss_pred CCcEEEEeeEEEEecCCceeEEEEEEEEEeCCCceeeEEEeCcEEEEEEeCCeEEeeccCCC-CceeecCCCeEEEEEEE
Q 046793 77 KGPKYYIDNLIPINQSSYYDVIYNFSIRSKNPNCHMGIIYQNDGIVSLSLKQQVIAIGNGKF-PKFYHGTKKSMLFNLLL 155 (237)
Q Consensus 77 ~~P~f~V~s~~v~nlss~ls~~~~ltl~a~NPN~k~~i~Y~~~~v~v~~Y~g~~Lg~~~~~v-P~F~q~~kntt~v~~~l 155 (237)
++|...--.+..-.+ +....++-.++.++|||. ..+--.+.+.+++ -+|..+| +|.. .++..++++..++++.+
T Consensus 31 ~~p~ve~~ka~wGkv-t~s~~EiV~t~KiyNPN~-fPipVtgl~y~vy-mN~Iki~--eG~~~k~~~v~p~S~~tvdv~l 105 (161)
T COG5608 31 KKPGVESMKAKWGKV-TNSETEIVGTLKIYNPNP-FPIPVTGLQYAVY-MNDIKIG--EGEILKGTTVPPNSRETVDVPL 105 (161)
T ss_pred CCCCceEEEEEEEEE-eccceEEEEEEEecCCCC-cceeeeceEEEEE-EcceEee--ccccccceEECCCCeEEEEEEE
Confidence 456555444443111 124568888999999997 7999999999999 9999999 9985 56899999999999888
Q ss_pred EEe---cChhhHHHHhcC-CceEEEEEEEE
Q 046793 156 NFK---HPKEIEDILKDE-KIQLPLSLLIN 181 (237)
Q Consensus 156 ~g~---l~~~~~~~L~~~-~g~V~l~v~~~ 181 (237)
.-+ +.+.-.+.+++. +..+..++++.
T Consensus 106 ~~d~~~~ke~w~~hi~ngErs~Ir~~i~~~ 135 (161)
T COG5608 106 RLDNSKIKEWWVTHIENGERSTIRVRIKGV 135 (161)
T ss_pred EEehHHHHHHHHHHhhccCcccEEEEEEEE
Confidence 765 445444566654 44455554444
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.14 E-value=0.0033 Score=58.23 Aligned_cols=87 Identities=11% Similarity=0.181 Sum_probs=49.8
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhheeeecCCcEEEEeeEEEEecCCceeEEEEEEEEEeCCCceeeEEEeCc
Q 046793 40 DANISFTFLLLWVSLLLFIVALILLLIFIIFLFVVRPKGPKYYIDNLIPINQSSYYDVIYNFSIRSKNPNCHMGIIYQND 119 (237)
Q Consensus 40 ~~~~cc~~c~~~~~~~ll~lill~gi~~~i~~lv~rP~~P~f~V~s~~v~nlss~ls~~~~ltl~a~NPN~k~~i~Y~~~ 119 (237)
+|++|.++++|.++. +++|+++.+++.+++ -.-+| .-.+.|.++. --+.+.--.-|+++|.|.|||- +.|.-++.
T Consensus 295 ~r~~~~r~~~c~~~~-i~~lL~ig~~~gFv~-AttKp-L~~v~v~~I~-NVlaS~qELmfdl~V~A~NPn~-~~V~I~d~ 369 (387)
T PF12751_consen 295 QRSWFSRFASCIYLS-ILLLLVIGFAIGFVF-ATTKP-LTDVQVVSIQ-NVLASEQELMFDLTVEAFNPNW-FTVTIDDM 369 (387)
T ss_pred cccHHhhhhHHHHHH-HHHHHHHHHHHHhhh-hcCcc-cccceEEEee-eeeeccceEEEeeEEEEECCCe-EEEEeccc
Confidence 466776654444332 333333333443333 34454 1122222221 1123455678999999999995 89999999
Q ss_pred EEEEEEeCCeEEe
Q 046793 120 GIVSLSLKQQVIA 132 (237)
Q Consensus 120 ~v~v~~Y~g~~Lg 132 (237)
+++++ -+..-+|
T Consensus 370 dldIF-AKS~yvg 381 (387)
T PF12751_consen 370 DLDIF-AKSRYVG 381 (387)
T ss_pred eeeeE-ecCCccC
Confidence 99999 5554444
No 6
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.09 E-value=0.024 Score=49.48 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=57.3
Q ss_pred cCCcEEEEeeEE---E-EecCC-ceeEEEEEEEEEeCCCceeeEEEeCcEEEEEEeCCeEEeeccCCCCce-eecCCCeE
Q 046793 76 PKGPKYYIDNLI---P-INQSS-YYDVIYNFSIRSKNPNCHMGIIYQNDGIVSLSLKQQVIAIGNGKFPKF-YHGTKKSM 149 (237)
Q Consensus 76 P~~P~f~V~s~~---v-~nlss-~ls~~~~ltl~a~NPN~k~~i~Y~~~~v~v~~Y~g~~Lg~~~~~vP~F-~q~~kntt 149 (237)
|+.-.++-.++. + ||-++ +...++.-++.++|||. ..+.-.+.++.+. |...-+| .+..... ..++++..
T Consensus 98 PRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~-~~~~VVG--~~~~~~~~~I~Prs~~ 173 (238)
T PF07092_consen 98 PRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTVTNLSIQVL-YMKTVVG--KGKNSNITVIGPRSSK 173 (238)
T ss_pred CcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEEEeEEEEEE-EEEeEEe--eeEecceEEecccCCc
Confidence 776665544443 3 55543 67888888999999995 8999999999999 9999999 8876543 45666666
Q ss_pred EEEEEEEEe
Q 046793 150 LFNLLLNFK 158 (237)
Q Consensus 150 ~v~~~l~g~ 158 (237)
.+...+...
T Consensus 174 q~~~tV~t~ 182 (238)
T PF07092_consen 174 QVNYTVKTT 182 (238)
T ss_pred eEEEEeeEE
Confidence 665555444
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=96.68 E-value=0.023 Score=49.13 Aligned_cols=102 Identities=15% Similarity=0.050 Sum_probs=58.0
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhheeeec--CCcEEEEeeEEE---------EecCC-----ceeEE
Q 046793 35 NSSNDDANISFTFLLLWVSLLLFIVALILLLIFIIFLFVVRP--KGPKYYIDNLIP---------INQSS-----YYDVI 98 (237)
Q Consensus 35 ~~r~~~~~~cc~~c~~~~~~~ll~lill~gi~~~i~~lv~rP--~~P~f~V~s~~v---------~nlss-----~ls~~ 98 (237)
++|++++.+||+ |++-+++++.++++++ ++.++---.| +.-.++++++.+ +|++- .-|+|
T Consensus 30 ~~~r~~~~~c~~-~~~a~~l~l~~v~~~l---~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN 105 (219)
T PLN03160 30 KTRRRNCIKCCG-CITATLLILATTILVL---VFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPN 105 (219)
T ss_pred ccccccceEEHH-HHHHHHHHHHHHHHhe---eeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCC
Confidence 445678888888 7766666666665533 3333333444 233444443332 34321 23566
Q ss_pred EEEEEEEeCCCceeeEEEeCcEEEEEEeCCeEEeeccCCCCceeecCCCeEE
Q 046793 99 YNFSIRSKNPNCHMGIIYQNDGIVSLSLKQQVIAIGNGKFPKFYHGTKKSML 150 (237)
Q Consensus 99 ~~ltl~a~NPN~k~~i~Y~~~~v~v~~Y~g~~Lg~~~~~vP~F~q~~kntt~ 150 (237)
. +.+.-+| ....++|++..+.- ..+. .|..|++.+...+.+.
T Consensus 106 ~-~~~~Y~~--~~~~v~Y~g~~vG~-----a~~p--~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 106 V-ASFKYSN--TTTTIYYGGTVVGE-----ARTP--PGKAKARRTMRMNVTV 147 (219)
T ss_pred c-eeEEEcC--eEEEEEECCEEEEE-----EEcC--CcccCCCCeEEEEEEE
Confidence 6 5666653 45889998754433 3455 6777777777777664
No 8
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=74.57 E-value=49 Score=29.35 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=17.5
Q ss_pred ceeEEEEEEEEEeCCCceeeEE
Q 046793 94 YYDVIYNFSIRSKNPNCHMGII 115 (237)
Q Consensus 94 ~ls~~~~ltl~a~NPN~k~~i~ 115 (237)
.+...=|+++.++|||.++.=.
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~~ 126 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTGQ 126 (292)
T ss_pred EEEeccCeeEEccCCCCceeee
Confidence 4667789999999999876544
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=71.76 E-value=15 Score=29.01 Aligned_cols=51 Identities=6% Similarity=-0.082 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhe--eeecCCcEEEEeeEEEEecCCceeEEEEEEEEEeCCCc
Q 046793 57 FIVALILLLIFIIFLF--VVRPKGPKYYIDNLIPINQSSYYDVIYNFSIRSKNPNC 110 (237)
Q Consensus 57 l~lill~gi~~~i~~l--v~rP~~P~f~V~s~~v~nlss~ls~~~~ltl~a~NPN~ 110 (237)
+.++++++++.+++|. .-+++.|.+++....... .....|-+-++++|--.
T Consensus 10 Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r---~~~gqyyVpF~V~N~gg 62 (122)
T TIGR02588 10 ISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER---MQTGQYYVPFAIHNLGG 62 (122)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeE---EeCCEEEEEEEEEeCCC
Confidence 3445556677777664 457789999887765511 23445777788888554
No 10
>PF10631 DUF2477: Protein of unknown function (DUF2477); InterPro: IPR018904 This is a family of proteins with no known function. The family is rich in proline residues.
Probab=69.65 E-value=2.2 Score=33.36 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=12.9
Q ss_pred cccccCCCCCceeE-eecCc---CCCCCCC
Q 046793 8 ARFQATTSSSQLYI-IQLPI---NRIHPRP 33 (237)
Q Consensus 8 ~~~~~~~~~~~~y~-~~~p~---~r~pp~~ 33 (237)
..|||+- .-|+ .|+|. |--+||-
T Consensus 82 qawqqp~---npy~sgqrpagltYag~PPv 108 (141)
T PF10631_consen 82 QAWQQPC---NPYGSGQRPAGLTYAGLPPV 108 (141)
T ss_pred ccccCCC---CcCCCCcCCCcccccCCCCC
Confidence 4566663 2244 67777 6544554
No 11
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=63.40 E-value=2.4 Score=29.11 Aligned_cols=7 Identities=14% Similarity=0.007 Sum_probs=2.9
Q ss_pred HHHHhhh
Q 046793 65 LIFIIFL 71 (237)
Q Consensus 65 i~~~i~~ 71 (237)
+.+++.|
T Consensus 52 lG~~~~~ 58 (60)
T PF06072_consen 52 LGALVAW 58 (60)
T ss_pred HHHHhhc
Confidence 3334444
No 12
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=61.34 E-value=35 Score=27.78 Aligned_cols=19 Identities=11% Similarity=-0.045 Sum_probs=11.7
Q ss_pred eEEEeCcEEEEEEeCCeEEe
Q 046793 113 GIIYQNDGIVSLSLKQQVIA 132 (237)
Q Consensus 113 ~i~Y~~~~v~v~~Y~g~~Lg 132 (237)
+-+|=..++++. +.+....
T Consensus 77 ~~rylkv~i~L~-~~~~~~~ 95 (162)
T PRK07021 77 ADRVLYVGLTLR-LPDEATR 95 (162)
T ss_pred CceEEEEEEEEE-ECCHHHH
Confidence 356767777777 6655433
No 13
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=56.49 E-value=94 Score=26.16 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=16.2
Q ss_pred ecCCcEEEEeeEEE--EecCCceeE
Q 046793 75 RPKGPKYYIDNLIP--INQSSYYDV 97 (237)
Q Consensus 75 rP~~P~f~V~s~~v--~nlss~ls~ 97 (237)
.++.|.|.+++++. +|.+..++.
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G~l~y 61 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEGALSY 61 (192)
T ss_pred CCCCCCEEEeccEEEEECCCCCEEE
Confidence 46789999999987 665433333
No 14
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=55.77 E-value=14 Score=31.11 Aligned_cols=29 Identities=28% Similarity=0.713 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeeecCCc
Q 046793 51 WVSLLLFIVALILLLIFIIFLFVVRPKGP 79 (237)
Q Consensus 51 ~~~~~ll~lill~gi~~~i~~lv~rP~~P 79 (237)
|..+.+.++.+++++++.+++.+++|..|
T Consensus 3 WK~aF~~Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 3 WKWAFLILLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHHHHHHHhheeeEEEccCCC
Confidence 55555555666677777788889999866
No 15
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=55.63 E-value=41 Score=26.86 Aligned_cols=15 Identities=0% Similarity=-0.223 Sum_probs=8.3
Q ss_pred EEeCcEEEEEEeCCeE
Q 046793 115 IYQNDGIVSLSLKQQV 130 (237)
Q Consensus 115 ~Y~~~~v~v~~Y~g~~ 130 (237)
+|=..++.+. +++..
T Consensus 63 ~ylk~~i~l~-~~~~~ 77 (142)
T PRK07718 63 NFIRIQFKIE-TDSKK 77 (142)
T ss_pred CEEEEEEEEE-ECCHH
Confidence 3555666666 55543
No 16
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=53.42 E-value=1e+02 Score=23.66 Aligned_cols=7 Identities=0% Similarity=0.050 Sum_probs=5.4
Q ss_pred eCCeEEe
Q 046793 126 LKQQVIA 132 (237)
Q Consensus 126 Y~g~~Lg 132 (237)
|++..+|
T Consensus 72 ~d~aeVG 78 (112)
T PF14155_consen 72 YDGAEVG 78 (112)
T ss_pred CCCCEEE
Confidence 6777888
No 17
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=52.13 E-value=13 Score=21.10 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhheeeecCC
Q 046793 59 VALILLLIFIIFLFVVRPKG 78 (237)
Q Consensus 59 lill~gi~~~i~~lv~rP~~ 78 (237)
+++.+++++-.+|-+++|++
T Consensus 5 ~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 5 GIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 34445556666666788864
No 18
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=51.93 E-value=9.3 Score=29.71 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=10.1
Q ss_pred HHHHhhheeeecCCcE
Q 046793 65 LIFIIFLFVVRPKGPK 80 (237)
Q Consensus 65 i~~~i~~lv~rP~~P~ 80 (237)
++++++|+.+||+.=+
T Consensus 11 v~~~i~yf~iRPQkKr 26 (113)
T PRK06531 11 VMLGLIFFMQRQQKKQ 26 (113)
T ss_pred HHHHHHHheechHHHH
Confidence 3445567789996543
No 19
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=51.70 E-value=12 Score=38.36 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhheeeecCC
Q 046793 52 VSLLLFIVALILLLIFIIFLFVVRPKG 78 (237)
Q Consensus 52 ~~~~ll~lill~gi~~~i~~lv~rP~~ 78 (237)
.++.+.++++.++++++|++...+-+.
T Consensus 153 ~~~~l~Llvl~i~~ligv~~~fvtnk~ 179 (865)
T KOG4331|consen 153 PCCELELLVLAIELLIGVFRAFVTNKP 179 (865)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444555566666666666665444333
No 20
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.67 E-value=55 Score=25.42 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=13.3
Q ss_pred ceeEEEEEEEEEeCCCce
Q 046793 94 YYDVIYNFSIRSKNPNCH 111 (237)
Q Consensus 94 ~ls~~~~ltl~a~NPN~k 111 (237)
..+...+.++.+.|-|.+
T Consensus 49 ~~~~~y~y~i~ayn~~Gk 66 (113)
T COG5294 49 DGSPGYEYTITAYNKNGK 66 (113)
T ss_pred cCCccceeeehhhccCCc
Confidence 455567788999997765
No 21
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=51.36 E-value=58 Score=26.78 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhheee
Q 046793 49 LLWVSLLLFIVALILLLIFIIFLFVV 74 (237)
Q Consensus 49 ~~~~~~~ll~lill~gi~~~i~~lv~ 74 (237)
..|.+++++++++++|..+..+|+..
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 56777777777777777778888775
No 22
>PRK01844 hypothetical protein; Provisional
Probab=51.22 E-value=22 Score=25.40 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 046793 51 WVSLLLFIVALILLLIFIIF 70 (237)
Q Consensus 51 ~~~~~ll~lill~gi~~~i~ 70 (237)
|+.+++.++.+++|++++.+
T Consensus 4 ~~~I~l~I~~li~G~~~Gff 23 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFF 23 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55445556666677766655
No 23
>PHA02844 putative transmembrane protein; Provisional
Probab=49.40 E-value=23 Score=25.44 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhe
Q 046793 49 LLWVSLLLFIVALILLLIFIIFLF 72 (237)
Q Consensus 49 ~~~~~~~ll~lill~gi~~~i~~l 72 (237)
..|...++++++++++++...+||
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544444444444455556666
No 24
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=47.79 E-value=21 Score=23.25 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhheeeec
Q 046793 53 SLLLFIVALILLLIFIIFLFVVRP 76 (237)
Q Consensus 53 ~~~ll~lill~gi~~~i~~lv~rP 76 (237)
+.++++..+++|+.+..+|..|-|
T Consensus 9 ~~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 9 SLAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHHHhhheeeeccCC
Confidence 345666777888999999999977
No 25
>COG3671 Predicted membrane protein [Function unknown]
Probab=47.74 E-value=20 Score=28.22 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---hhheeee
Q 046793 48 LLLWVSLLLFIVALILLLIFI---IFLFVVR 75 (237)
Q Consensus 48 c~~~~~~~ll~lill~gi~~~---i~~lv~r 75 (237)
|++|.++.+++.++.+|++.. -+|.++|
T Consensus 73 ~vl~~iIg~Llt~lgiGv~i~~AlgvW~i~R 103 (125)
T COG3671 73 AVLWWIIGLLLTFLGIGVVILVALGVWYIYR 103 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666666665665443 3565554
No 26
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.70 E-value=20 Score=30.26 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=14.7
Q ss_pred HHHHhhheeeecCCcEEEEeeE
Q 046793 65 LIFIIFLFVVRPKGPKYYIDNL 86 (237)
Q Consensus 65 i~~~i~~lv~rP~~P~f~V~s~ 86 (237)
++++++.+++.|+.|..++.+.
T Consensus 25 ~~~~i~~~vlsp~ee~t~~~~a 46 (197)
T COG4698 25 LAVLIALFVLSPREEPTHLEDA 46 (197)
T ss_pred HHHHhheeeccCCCCCchhhcc
Confidence 3466666788998866655544
No 27
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=47.19 E-value=20 Score=23.05 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhheeeec
Q 046793 54 LLLFIVALILLLIFIIFLFVVRP 76 (237)
Q Consensus 54 ~~ll~lill~gi~~~i~~lv~rP 76 (237)
.++++..+++|+.+..+|..|.|
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCC
Confidence 35666777788999999999976
No 28
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.25 E-value=32 Score=24.49 Aligned_cols=20 Identities=40% Similarity=0.678 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 046793 50 LWVSLLLFIVALILLLIFII 69 (237)
Q Consensus 50 ~~~~~~ll~lill~gi~~~i 69 (237)
+|..++++++.+++|++.+.
T Consensus 3 l~lail~ivl~ll~G~~~G~ 22 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGF 22 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35555556666677777763
No 29
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=44.18 E-value=7.5 Score=30.30 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhheeee
Q 046793 42 NISFTFLLLWVSLLLFIVALILLLIFIIFLFVVR 75 (237)
Q Consensus 42 ~~cc~~c~~~~~~~ll~lill~gi~~~i~~lv~r 75 (237)
+.|.+ ++.|.-+.+|+.++++|-++.++ ++|.
T Consensus 26 ~s~sr-a~~vagltvLa~LLiAGQa~TaY-fv~~ 57 (114)
T PF09307_consen 26 GSCSR-ALKVAGLTVLACLLIAGQAVTAY-FVFQ 57 (114)
T ss_dssp ----------------------------------
T ss_pred CCccc-hhHHHHHHHHHHHHHHhHHHHHH-HHHH
Confidence 34555 88888777777777777665544 4553
No 30
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=44.09 E-value=10 Score=21.70 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhheeeecCC
Q 046793 59 VALILLLIFIIFLFVVRPKG 78 (237)
Q Consensus 59 lill~gi~~~i~~lv~rP~~ 78 (237)
+++.+++++-.+|-++||++
T Consensus 4 ~~l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 4 LVLAVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHHHHhCHHh
Confidence 34445556666666788864
No 31
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=43.56 E-value=22 Score=20.89 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhheeeecCC
Q 046793 59 VALILLLIFIIFLFVVRPKG 78 (237)
Q Consensus 59 lill~gi~~~i~~lv~rP~~ 78 (237)
.++.+|+.+-.+|-++||++
T Consensus 9 ~~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 9 GAVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 34444555556666788864
No 32
>PRK00523 hypothetical protein; Provisional
Probab=43.28 E-value=35 Score=24.42 Aligned_cols=20 Identities=35% Similarity=0.104 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 046793 51 WVSLLLFIVALILLLIFIIF 70 (237)
Q Consensus 51 ~~~~~ll~lill~gi~~~i~ 70 (237)
|+.+++.++++++|++++.+
T Consensus 5 ~l~I~l~i~~li~G~~~Gff 24 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYF 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666554
No 33
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=42.45 E-value=36 Score=34.99 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046793 48 LLLWVSLLLFIVALILLLIFI 68 (237)
Q Consensus 48 c~~~~~~~ll~lill~gi~~~ 68 (237)
+++.++++++++++++|++.+
T Consensus 140 ~~l~~~L~~~~~~il~g~i~a 160 (806)
T PF05478_consen 140 GCLGILLLLLTLIILFGVICA 160 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666543
No 34
>CHL00020 psbN photosystem II protein N
Probab=42.33 E-value=24 Score=22.71 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhheeeec
Q 046793 53 SLLLFIVALILLLIFIIFLFVVRP 76 (237)
Q Consensus 53 ~~~ll~lill~gi~~~i~~lv~rP 76 (237)
+.++++..+++|+.+..+|..|-|
T Consensus 6 ~~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 6 LVAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred hHHHHHHHHHHHhhheeeeeccCC
Confidence 345666777888999999999977
No 35
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=42.24 E-value=1.6e+02 Score=22.65 Aligned_cols=66 Identities=8% Similarity=-0.004 Sum_probs=38.5
Q ss_pred EEeeccCCCCceeecCCCeEEE-EEEEEEecChhhHHHHhcC---CceEEEEEEEEEEEEEEEEEEEEeeEEEEE
Q 046793 130 VIAIGNGKFPKFYHGTKKSMLF-NLLLNFKHPKEIEDILKDE---KIQLPLSLLINVPVKFKIWLVKSWRMKIVI 200 (237)
Q Consensus 130 ~Lg~~~~~vP~F~q~~kntt~v-~~~l~g~l~~~~~~~L~~~---~g~V~l~v~~~~~vr~kvg~~~s~~~~v~V 200 (237)
++| .-.+|+..-.+..+..+ +..+.- .+.++..++..+ ...+.+.++.+ .+.++|.++...+....
T Consensus 2 ~f~--~~~lP~~~~~~~~~~~~~~~~l~i-~d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~~i~~~k 71 (125)
T PF12505_consen 2 PFA--TLDLPQIKIKGNGTISIIDQTLTI-TDQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFSGIPFDK 71 (125)
T ss_pred ceE--EEECCCEEecCCceEEEeeeeEEe-cCHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEEEEeecc
Confidence 456 77888887722222222 222211 456666667666 45677777766 58889988666544433
No 36
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=41.42 E-value=59 Score=26.67 Aligned_cols=26 Identities=4% Similarity=-0.051 Sum_probs=15.4
Q ss_pred EEEEEeCCCceeeEEEeCcEEEEEEeCCeE
Q 046793 101 FSIRSKNPNCHMGIIYQNDGIVSLSLKQQV 130 (237)
Q Consensus 101 ltl~a~NPN~k~~i~Y~~~~v~v~~Y~g~~ 130 (237)
+++....++ +-+|=..++++. .++..
T Consensus 76 fvvNl~~~~---~~ryLkv~i~l~-~~d~~ 101 (170)
T PRK05696 76 FVFNVPGNG---RDRLVQIKVQLM-VRGSD 101 (170)
T ss_pred EEEEecCCC---CceEEEEEEEEE-ECCHH
Confidence 444444444 356777777777 66644
No 37
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=40.44 E-value=27 Score=22.56 Aligned_cols=20 Identities=20% Similarity=0.556 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhheeeecCC
Q 046793 59 VALILLLIFIIFLFVVRPKG 78 (237)
Q Consensus 59 lill~gi~~~i~~lv~rP~~ 78 (237)
++++.+++++++|-+++|+.
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHcccc
Confidence 33444455566666778864
No 38
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=39.56 E-value=33 Score=22.43 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhheeeecCC
Q 046793 57 FIVALILLLIFIIFLFVVRPKG 78 (237)
Q Consensus 57 l~lill~gi~~~i~~lv~rP~~ 78 (237)
+.+++++++.+++++.+|+|+.
T Consensus 14 ~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 14 WGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHhCCCc
Confidence 3344444556666666888854
No 39
>PHA02819 hypothetical protein; Provisional
Probab=38.56 E-value=35 Score=24.27 Aligned_cols=25 Identities=32% Similarity=0.680 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhe
Q 046793 48 LLLWVSLLLFIVALILLLIFIIFLF 72 (237)
Q Consensus 48 c~~~~~~~ll~lill~gi~~~i~~l 72 (237)
+..|...++++++++++++...+||
T Consensus 43 ~~~~~~~ii~l~~~~~~~~~~flYL 67 (71)
T PHA02819 43 SFLRYYLIIGLVTIVFVIIFIIFYL 67 (71)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544444444444444444554
No 40
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=38.36 E-value=24 Score=24.71 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=11.7
Q ss_pred HHHHHHHhhheeeecC
Q 046793 62 ILLLIFIIFLFVVRPK 77 (237)
Q Consensus 62 l~gi~~~i~~lv~rP~ 77 (237)
+++.+..+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 3445667788899997
No 41
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=38.35 E-value=34 Score=26.62 Aligned_cols=25 Identities=12% Similarity=0.409 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhheeeec
Q 046793 52 VSLLLFIVALILLLIFIIFLFVVRP 76 (237)
Q Consensus 52 ~~~~ll~lill~gi~~~i~~lv~rP 76 (237)
|...++++++-++++.++.+|+++-
T Consensus 64 fvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 64 FVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeec
Confidence 3445556666667777777777753
No 42
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=38.19 E-value=42 Score=29.20 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=9.8
Q ss_pred HHHHHhhheeeec
Q 046793 64 LLIFIIFLFVVRP 76 (237)
Q Consensus 64 gi~~~i~~lv~rP 76 (237)
.+++++.|+.|||
T Consensus 236 l~~Ia~aW~~yRP 248 (248)
T PF07787_consen 236 LLTIALAWLFYRP 248 (248)
T ss_pred HHHHHHhheeeCc
Confidence 3556778999998
No 43
>PHA03054 IMV membrane protein; Provisional
Probab=37.81 E-value=35 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhe
Q 046793 48 LLLWVSLLLFIVALILLLIFIIFLF 72 (237)
Q Consensus 48 c~~~~~~~ll~lill~gi~~~i~~l 72 (237)
|..|...++++++++++++...+||
T Consensus 45 ~~~~~~~ii~l~~v~~~~l~~flYL 69 (72)
T PHA03054 45 CWGWYWLIIIFFIVLILLLLIYLYL 69 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544444443333344444443
No 44
>PHA02650 hypothetical protein; Provisional
Probab=37.55 E-value=35 Score=24.83 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhe
Q 046793 48 LLLWVSLLLFIVALILLLIFIIFLF 72 (237)
Q Consensus 48 c~~~~~~~ll~lill~gi~~~i~~l 72 (237)
+..|...++++++++++++...+||
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456554554444444455555665
No 45
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=36.50 E-value=33 Score=20.80 Aligned_cols=14 Identities=36% Similarity=0.785 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhe
Q 046793 59 VALILLLIFIIFLF 72 (237)
Q Consensus 59 lill~gi~~~i~~l 72 (237)
.+.+++++++++|+
T Consensus 11 vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 11 VVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHH
Confidence 34445566666664
No 46
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=36.22 E-value=2.1e+02 Score=23.41 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=31.6
Q ss_pred CCCceeeEEEeCcEEEEEEeCCeE-EeeccCCCCceeecCCCeEEEEEEEEE--e--cChhhHHHHhcC
Q 046793 107 NPNCHMGIIYQNDGIVSLSLKQQV-IAIGNGKFPKFYHGTKKSMLFNLLLNF--K--HPKEIEDILKDE 170 (237)
Q Consensus 107 NPN~k~~i~Y~~~~v~v~~Y~g~~-Lg~~~~~vP~F~q~~kntt~v~~~l~g--~--l~~~~~~~L~~~ 170 (237)
--|.++.+.|..+-=+++ =.|+. ++ .|++. + + ++-.-+-.+.. + .++++.++|+..
T Consensus 80 D~~~~v~V~Y~GiLPDLF-REGQgVVa--~G~~~---~-~-~~f~A~~vLAKHdEnY~P~ev~~~mk~~ 140 (153)
T COG2332 80 DGNKSVTVSYEGILPDLF-REGQGVVA--EGQLQ---G-G-GVFEAKEVLAKHDENYTPPEVAKAMKKN 140 (153)
T ss_pred cCCceEEEEEeccCchhh-hcCCeEEE--EEEec---C-C-CEEEeeehhhcCCcccCCHHHHHHhhhc
Confidence 447778899987777777 56654 44 55541 1 1 11111112222 1 788888888764
No 47
>PF15050 SCIMP: SCIMP protein
Probab=35.48 E-value=28 Score=27.42 Aligned_cols=25 Identities=24% Similarity=0.592 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeee
Q 046793 50 LWVSLLLFIVALILLLIFIIFLFVVR 75 (237)
Q Consensus 50 ~~~~~~ll~lill~gi~~~i~~lv~r 75 (237)
+|.++++. ++++....++|+|.+.|
T Consensus 8 FWiiLAVa-II~vS~~lglIlyCvcR 32 (133)
T PF15050_consen 8 FWIILAVA-IILVSVVLGLILYCVCR 32 (133)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 57655443 33333455667776655
No 48
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=34.68 E-value=61 Score=24.62 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhhhee
Q 046793 53 SLLLFIVALILLLIFIIFLFV 73 (237)
Q Consensus 53 ~~~ll~lill~gi~~~i~~lv 73 (237)
++.|..+++.+|+.+++++.+
T Consensus 22 LItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 22 LITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555566667777776544
No 49
>PHA02975 hypothetical protein; Provisional
Probab=32.90 E-value=45 Score=23.57 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhe
Q 046793 48 LLLWVSLLLFIVALILLLIFIIFLF 72 (237)
Q Consensus 48 c~~~~~~~ll~lill~gi~~~i~~l 72 (237)
+..|...++++++++.+++...+||
T Consensus 41 ~~~~~~~ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 41 SSLSIILIIFIIFITCIAVFTFLYL 65 (69)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556554444444444444444553
No 50
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=32.17 E-value=1.1e+02 Score=25.12 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=10.9
Q ss_pred EEEeCcEEEEEEeCCeEE
Q 046793 114 IIYQNDGIVSLSLKQQVI 131 (237)
Q Consensus 114 i~Y~~~~v~v~~Y~g~~L 131 (237)
.+|=..++++. +.+...
T Consensus 86 ~ryLkv~i~L~-~~~~~~ 102 (166)
T PRK12785 86 VQYLKLKVVLE-VKDEKV 102 (166)
T ss_pred ceEEEEEEEEE-ECCHHH
Confidence 46767777777 666443
No 51
>PHA03049 IMV membrane protein; Provisional
Probab=31.85 E-value=39 Score=23.78 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhheeee
Q 046793 55 LLFIVALILLLIFIIFLFVVR 75 (237)
Q Consensus 55 ~ll~lill~gi~~~i~~lv~r 75 (237)
-++++++-++++++|+|-+|+
T Consensus 4 d~~l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555666778888888774
No 52
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=31.43 E-value=27 Score=30.20 Aligned_cols=10 Identities=20% Similarity=0.228 Sum_probs=6.4
Q ss_pred eeeecCCcEE
Q 046793 72 FVVRPKGPKY 81 (237)
Q Consensus 72 lv~rP~~P~f 81 (237)
-++||+....
T Consensus 181 K~~K~K~~~~ 190 (218)
T PF14283_consen 181 KFYKPKQEEK 190 (218)
T ss_pred EEeccccccc
Confidence 3778876544
No 53
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.83 E-value=35 Score=23.56 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=9.5
Q ss_pred HHHHhhheeeecCC
Q 046793 65 LIFIIFLFVVRPKG 78 (237)
Q Consensus 65 i~~~i~~lv~rP~~ 78 (237)
++.+++|.+|||+.
T Consensus 21 ~fiavi~~ayr~~~ 34 (60)
T COG4736 21 FFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHhcccc
Confidence 44566677889864
No 54
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=29.37 E-value=48 Score=31.57 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=3.0
Q ss_pred HHHHHH
Q 046793 48 LLLWVS 53 (237)
Q Consensus 48 c~~~~~ 53 (237)
|..|++
T Consensus 81 c~~~sL 86 (418)
T cd07912 81 CLKWSL 86 (418)
T ss_pred HHHHHH
Confidence 455543
No 55
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=29.35 E-value=43 Score=23.60 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhheeee
Q 046793 55 LLFIVALILLLIFIIFLFVVR 75 (237)
Q Consensus 55 ~ll~lill~gi~~~i~~lv~r 75 (237)
-++++++-++++++|+|-+|.
T Consensus 4 d~iLi~ICVaii~lIlY~iYn 24 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555566778888887774
No 56
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.94 E-value=1.5e+02 Score=27.18 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhheeeec
Q 046793 55 LLFIVALILLLIFIIFLFVVRP 76 (237)
Q Consensus 55 ~ll~lill~gi~~~i~~lv~rP 76 (237)
.+++++.+++++++++|+..-+
T Consensus 11 ~~f~~~~l~~~~~~~~~~~~~~ 32 (359)
T COG1463 11 GLFLLLGLLAVLLFVLWLATLP 32 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4455555556666666655433
No 57
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=28.36 E-value=65 Score=28.08 Aligned_cols=9 Identities=11% Similarity=0.656 Sum_probs=5.1
Q ss_pred HHHHHHHHH
Q 046793 48 LLLWVSLLL 56 (237)
Q Consensus 48 c~~~~~~~l 56 (237)
|+.|+++++
T Consensus 228 ~~~~~~i~~ 236 (251)
T PF09753_consen 228 CWTWLMIFV 236 (251)
T ss_pred HHHHHHHHH
Confidence 667764433
No 58
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=28.29 E-value=39 Score=30.70 Aligned_cols=23 Identities=30% Similarity=0.636 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhhheeee
Q 046793 53 SLLLFIVALILLLIFIIFLFVVR 75 (237)
Q Consensus 53 ~~~ll~lill~gi~~~i~~lv~r 75 (237)
+.+.+++++++.++.+|+||++|
T Consensus 258 I~aSiiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555567778888775
No 59
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=28.20 E-value=1.4e+02 Score=23.06 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=16.6
Q ss_pred EEEEEEEeCCC----ceeeEEEe--CcEEEEEEeCCe
Q 046793 99 YNFSIRSKNPN----CHMGIIYQ--NDGIVSLSLKQQ 129 (237)
Q Consensus 99 ~~ltl~a~NPN----~k~~i~Y~--~~~v~v~~Y~g~ 129 (237)
.--++-+.||| ..+..+|| ...|.+. |+|.
T Consensus 51 ~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~-~~~~ 86 (109)
T PF06129_consen 51 LLNTVLFLNPDKPVSSQVILYYDSRSGTVTVA-YKNK 86 (109)
T ss_pred ceeeEEecCCCcccccceEEEEccCCCeEEEE-ECCc
Confidence 33456677777 34566676 3344555 5543
No 60
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=27.75 E-value=69 Score=25.91 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=5.7
Q ss_pred chhHHHHHHHHHHHH
Q 046793 44 SFTFLLLWVSLLLFI 58 (237)
Q Consensus 44 cc~~c~~~~~~~ll~ 58 (237)
||-+-+++.++.+++
T Consensus 35 l~s~Sg~~l~lG~lv 49 (141)
T PF10177_consen 35 LCSPSGLFLLLGILV 49 (141)
T ss_pred EecHHHHHHHHHHHH
Confidence 444433333333333
No 61
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=27.56 E-value=49 Score=27.26 Aligned_cols=16 Identities=25% Similarity=0.621 Sum_probs=10.7
Q ss_pred HHHHHHHHhhheeeec
Q 046793 61 LILLLIFIIFLFVVRP 76 (237)
Q Consensus 61 ll~gi~~~i~~lv~rP 76 (237)
+++|+++.++|+.+||
T Consensus 13 ~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 13 FLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHhhhhccCC
Confidence 3344444788889998
No 62
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=27.31 E-value=1.1e+02 Score=17.50 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=4.7
Q ss_pred HHHHHHHHHhh
Q 046793 60 ALILLLIFIIF 70 (237)
Q Consensus 60 ill~gi~~~i~ 70 (237)
.+++++.++++
T Consensus 16 ~lv~~iTGl~l 26 (27)
T PF03929_consen 16 MLVFAITGLIL 26 (27)
T ss_pred HHHHHHHHHHh
Confidence 33344444444
No 63
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.04 E-value=50 Score=27.07 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeeec
Q 046793 51 WVSLLLFIVALILLLIFIIFLFVVRP 76 (237)
Q Consensus 51 ~~~~~ll~lill~gi~~~i~~lv~rP 76 (237)
|.++++++++.+++.++..+|....|
T Consensus 8 ~i~ii~viflai~~s~~~~~~~s~~P 33 (161)
T COG5353 8 IIIIILVIFLAIILSIALFFWKSMKP 33 (161)
T ss_pred eehhHHHHHHHHHHHHHHHHhHhcCc
Confidence 44444445555556667777777766
No 64
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=25.94 E-value=61 Score=24.86 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH-Hhhheee
Q 046793 51 WVSLLLFIVALILLLIF-IIFLFVV 74 (237)
Q Consensus 51 ~~~~~ll~lill~gi~~-~i~~lv~ 74 (237)
|.+.+++++++++.+++ ++.|...
T Consensus 1 w~Ll~il~llLll~l~asl~~wr~~ 25 (107)
T PF15330_consen 1 WLLLGILALLLLLSLAASLLAWRMK 25 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544444 5556544
No 65
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=25.79 E-value=3.2e+02 Score=21.29 Aligned_cols=37 Identities=14% Similarity=-0.066 Sum_probs=27.8
Q ss_pred eeEEEEEEEEEeCCCceeeEEEeCcEEEEEEeCCeEEe
Q 046793 95 YDVIYNFSIRSKNPNCHMGIIYQNDGIVSLSLKQQVIA 132 (237)
Q Consensus 95 ls~~~~ltl~a~NPN~k~~i~Y~~~~v~v~~Y~g~~Lg 132 (237)
-+..+.++.+++|... ....|-.++++++--+|..++
T Consensus 66 ~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~ 102 (149)
T PF11906_consen 66 GPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLA 102 (149)
T ss_pred CCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEE
Confidence 4667888899999776 588888888888733455666
No 66
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=25.49 E-value=3.4e+02 Score=21.36 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=37.7
Q ss_pred HHHhhheeeec--CCcEEEEeeEEEEecCCceeEEEEEEEEEeCCCceeeEEEeCcEEEEEEeCCeEEe
Q 046793 66 IFIIFLFVVRP--KGPKYYIDNLIPINQSSYYDVIYNFSIRSKNPNCHMGIIYQNDGIVSLSLKQQVIA 132 (237)
Q Consensus 66 ~~~i~~lv~rP--~~P~f~V~s~~v~nlss~ls~~~~ltl~a~NPN~k~~i~Y~~~~v~v~~Y~g~~Lg 132 (237)
+.+++|.++.. +++..++.+.+-++ .+-.+-+..+++|-.+ ..+..=.+++++. .++...+
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~l~----~~~~~~v~g~V~N~g~-~~i~~c~i~~~l~-~~~~~~~ 95 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKRLQ----YSESFYVDGTVTNTGK-FTIKKCKITVKLY-NDKQVSG 95 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeeeee----eccEEEEEEEEEECCC-CEeeEEEEEEEEE-eCCCccC
Confidence 33444444433 55666666554332 3566777889999765 5777777888887 6554444
No 67
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=24.21 E-value=43 Score=25.86 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=8.0
Q ss_pred HHHhhheeeecCCc
Q 046793 66 IFIIFLFVVRPKGP 79 (237)
Q Consensus 66 ~~~i~~lv~rP~~P 79 (237)
++++.|+.+||+.=
T Consensus 14 ~~i~yF~~iRPQkK 27 (109)
T PRK05886 14 MGGFMYFASRRQRK 27 (109)
T ss_pred HHHHHHHHccHHHH
Confidence 34444567898543
No 68
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=23.74 E-value=2.7e+02 Score=20.46 Aligned_cols=60 Identities=5% Similarity=-0.081 Sum_probs=30.2
Q ss_pred ceeEEEEEEEEEeCCCceeeEE---EeCcEEEEEEeCCeEEeeccCCCCceeecCCCeEEEEEEE
Q 046793 94 YYDVIYNFSIRSKNPNCHMGII---YQNDGIVSLSLKQQVIAIGNGKFPKFYHGTKKSMLFNLLL 155 (237)
Q Consensus 94 ~ls~~~~ltl~a~NPN~k~~i~---Y~~~~v~v~~Y~g~~Lg~~~~~vP~F~q~~kntt~v~~~l 155 (237)
.+.-++++.++++||... .++ -.=....++ |.|....-..-.......+++++..+...+
T Consensus 12 ~vG~d~~v~v~~~N~~~~-~l~~v~~~l~~~~v~-ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSE-PLRNVSLNLCAFTVE-YTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS--EECEEEEEEEEEEE-CTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEeCCcC-ccccceeEEEEEEEE-ECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 356789999999999753 222 111334446 888765300112233344555555555444
No 69
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=23.17 E-value=57 Score=26.75 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=25.6
Q ss_pred HHHHHHHhhheeeecCCcEEEEeeEEEEecCCceeEEEEEEEEEeCCCceeeEEEe
Q 046793 62 ILLLIFIIFLFVVRPKGPKYYIDNLIPINQSSYYDVIYNFSIRSKNPNCHMGIIYQ 117 (237)
Q Consensus 62 l~gi~~~i~~lv~rP~~P~f~V~s~~v~nlss~ls~~~~ltl~a~NPN~k~~i~Y~ 117 (237)
+++++++++|+..|+++-.|-=.+-. .+++.++|+.-.++|.
T Consensus 63 ll~il~lvf~~c~r~kktdfidSdGk--------------vvtay~~n~~~~~w~~ 104 (154)
T PF04478_consen 63 LLGILALVFIFCIRRKKTDFIDSDGK--------------VVTAYRSNKLTKWWYS 104 (154)
T ss_pred HHHHHHhheeEEEecccCccccCCCc--------------EEEEEcCchHHHHHHH
Confidence 34567777888889887654322222 3566777765555553
No 70
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=23.04 E-value=1e+02 Score=19.27 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeeecC
Q 046793 48 LLLWVSLLLFIVALILLLIFIIFLFVVRPK 77 (237)
Q Consensus 48 c~~~~~~~ll~lill~gi~~~i~~lv~rP~ 77 (237)
-..|++ +++++-+++.++|++++.+
T Consensus 22 k~~W~~-----~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 22 KILWLI-----VILFFPIIGPILYLIFGRK 46 (46)
T ss_pred hhHHHH-----HHHHHHHHHHhheEEEeCC
Confidence 356764 2333556788889888753
No 71
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=22.61 E-value=1.2e+02 Score=25.96 Aligned_cols=28 Identities=4% Similarity=0.042 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeee
Q 046793 48 LLLWVSLLLFIVALILLLIFIIFLFVVR 75 (237)
Q Consensus 48 c~~~~~~~ll~lill~gi~~~i~~lv~r 75 (237)
...|.++++.++++.++.+++++|+.-+
T Consensus 29 ~~~W~~~a~~~l~~a~~~v~~~~~l~~~ 56 (220)
T PRK13836 29 AAAWRIVGILGLTMAVIGFGYALYQSTQ 56 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3568777765665544445555665543
No 72
>PHA02692 hypothetical protein; Provisional
Probab=22.37 E-value=79 Score=22.47 Aligned_cols=8 Identities=25% Similarity=0.958 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 046793 49 LLWVSLLL 56 (237)
Q Consensus 49 ~~~~~~~l 56 (237)
..|...++
T Consensus 43 ~~~~~~ii 50 (70)
T PHA02692 43 VPWTTVFL 50 (70)
T ss_pred cchHHHHH
Confidence 34544333
No 73
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.84 E-value=85 Score=29.25 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhheeee
Q 046793 52 VSLLLFIVALILLLIFIIFLFVVR 75 (237)
Q Consensus 52 ~~~~ll~lill~gi~~~i~~lv~r 75 (237)
+++.||+|+++=.|+.+|.|+++.
T Consensus 228 fl~~IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 228 FLAFILVLAIVRLILFGITWILTG 251 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455566655677788887775
No 74
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=21.71 E-value=74 Score=32.65 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeeecCCcEEE
Q 046793 50 LWVSLLLFIVALILLLIFIIFLFVVRPKGPKYY 82 (237)
Q Consensus 50 ~~~~~~ll~lill~gi~~~i~~lv~rP~~P~f~ 82 (237)
+|++.++++++++.+.+++++++.+.|+.|.+.
T Consensus 6 ~~~l~i~~~~~l~g~~~~~~~~~~~~~dLPd~~ 38 (797)
T COG5009 6 KYLLGILVTLILLGAGALAGLYLYISPDLPDVE 38 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChH
Confidence 344444444544444556666777788888764
No 75
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=21.62 E-value=1.1e+02 Score=17.90 Aligned_cols=19 Identities=21% Similarity=0.294 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhheeeecCC
Q 046793 60 ALILLLIFIIFLFVVRPKG 78 (237)
Q Consensus 60 ill~gi~~~i~~lv~rP~~ 78 (237)
++.+|+++-.+|-++||++
T Consensus 10 a~a~~Lf~YLv~ALlRaer 28 (29)
T PRK14740 10 ALATGLFVYLLVALLRADR 28 (29)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 3334455555555678764
No 76
>PRK15231 fimbrial adhesin protein SefD; Provisional
Probab=21.61 E-value=2.8e+02 Score=22.61 Aligned_cols=49 Identities=6% Similarity=0.001 Sum_probs=24.5
Q ss_pred ecCCCe-EEEEEEEEEe--cChhhHHHHhcC-CceEEEEEEEEEEEEEEEEEE
Q 046793 143 HGTKKS-MLFNLLLNFK--HPKEIEDILKDE-KIQLPLSLLINVPVKFKIWLV 191 (237)
Q Consensus 143 q~~knt-t~v~~~l~g~--l~~~~~~~L~~~-~g~V~l~v~~~~~vr~kvg~~ 191 (237)
|+.++. ..+.+.+.|+ .|+.....+... .....|+|.++..=++..+.|
T Consensus 87 qGk~dsqh~LrVRlgGeGWqPd~~g~Giv~~~~eqa~FDVv~DGnQ~V~pD~Y 139 (150)
T PRK15231 87 RGQNNSAHKLRIRIGGEDWQPDNSGIGMVSHSDFTNEFNIYYFGNGDIPVDTY 139 (150)
T ss_pred ECCCCCcceEEEEecCCCccCCCCCCceEeecccceeEEEEEeCCeecCCCeE
Confidence 544433 4477777776 332211112111 235677777776555554443
No 77
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=21.36 E-value=2.9e+02 Score=21.15 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=16.2
Q ss_pred eEEEEEEEEEeCCCceeeEEEeCcEE
Q 046793 96 DVIYNFSIRSKNPNCHMGIIYQNDGI 121 (237)
Q Consensus 96 s~~~~ltl~a~NPN~k~~i~Y~~~~v 121 (237)
..++..++.+.||.. +++..++.+.
T Consensus 99 g~~~~~~~~l~NPS~-~ti~lG~v~~ 123 (125)
T PF12505_consen 99 GINLNATVTLPNPSP-LTIDLGNVTL 123 (125)
T ss_pred cEEEEEEEEEcCCCe-EEEEeccEEE
Confidence 356677777888874 6666555544
No 78
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=21.19 E-value=71 Score=24.67 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=10.3
Q ss_pred HHhhheeeec--CCcEEEEe
Q 046793 67 FIIFLFVVRP--KGPKYYID 84 (237)
Q Consensus 67 ~~i~~lv~rP--~~P~f~V~ 84 (237)
++++||++-= ..|.|.|.
T Consensus 10 ~li~~Lv~~~r~~~~vf~i~ 29 (108)
T PF12321_consen 10 ALIFWLVFVDRRGLPVFEIH 29 (108)
T ss_pred HHHHHHHHccccCceEEEEE
Confidence 3777776533 34666644
No 79
>KOG4602 consensus Nanos and related proteins [General function prediction only]
Probab=21.07 E-value=35 Score=30.40 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=5.9
Q ss_pred CCCcchhHHH
Q 046793 40 DANISFTFLL 49 (237)
Q Consensus 40 ~~~~cc~~c~ 49 (237)
.|+-|||||.
T Consensus 231 ~r~l~CvFC~ 240 (318)
T KOG4602|consen 231 PRPLCCVFCF 240 (318)
T ss_pred CCceeEEeec
Confidence 4566777543
No 80
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=20.88 E-value=1.1e+02 Score=19.02 Aligned_cols=10 Identities=40% Similarity=0.979 Sum_probs=5.2
Q ss_pred HHHHhhheee
Q 046793 65 LIFIIFLFVV 74 (237)
Q Consensus 65 i~~~i~~lv~ 74 (237)
+...|+|.++
T Consensus 23 imliif~f~l 32 (43)
T PF11395_consen 23 IMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHH
Confidence 3445566554
No 81
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=20.80 E-value=1e+02 Score=28.63 Aligned_cols=7 Identities=0% Similarity=-0.216 Sum_probs=2.6
Q ss_pred cChhhHH
Q 046793 159 HPKEIED 165 (237)
Q Consensus 159 l~~~~~~ 165 (237)
+++....
T Consensus 258 v~E~~l~ 264 (390)
T PRK15136 258 FKETQLA 264 (390)
T ss_pred cCHHHHh
Confidence 3433333
No 82
>PRK14762 membrane protein; Provisional
Probab=20.78 E-value=1.8e+02 Score=16.52 Aligned_cols=10 Identities=40% Similarity=1.315 Sum_probs=5.7
Q ss_pred HHHHHHHHHH
Q 046793 49 LLWVSLLLFI 58 (237)
Q Consensus 49 ~~~~~~~ll~ 58 (237)
++|.++++++
T Consensus 4 ~lw~i~iifl 13 (27)
T PRK14762 4 ILWAVLIIFL 13 (27)
T ss_pred HHHHHHHHHH
Confidence 5676655444
No 83
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=20.68 E-value=61 Score=27.17 Aligned_cols=15 Identities=20% Similarity=0.178 Sum_probs=8.5
Q ss_pred EEeCcEEEEEEeCCeE
Q 046793 115 IYQNDGIVSLSLKQQV 130 (237)
Q Consensus 115 ~Y~~~~v~v~~Y~g~~ 130 (237)
+|=..++++. +.+..
T Consensus 103 ryLkv~i~Le-~~~~~ 117 (182)
T PRK08455 103 RYLKTSISLE-LSNEK 117 (182)
T ss_pred eEEEEEEEEE-ECCHh
Confidence 5666666666 55443
No 84
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.51 E-value=75 Score=25.02 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhheeee
Q 046793 52 VSLLLFIVALILLLIFIIFLFVVR 75 (237)
Q Consensus 52 ~~~~ll~lill~gi~~~i~~lv~r 75 (237)
+.+++=+++-++|++++|+|++-|
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHH
No 85
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=20.30 E-value=84 Score=21.37 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=8.4
Q ss_pred HHHHhhheeeecC
Q 046793 65 LIFIIFLFVVRPK 77 (237)
Q Consensus 65 i~~~i~~lv~rP~ 77 (237)
++++++|+.-||+
T Consensus 44 ~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 44 FIVVFVYLKTRPR 56 (56)
T ss_pred HHhheeEEeccCC
Confidence 4556677777774
Done!