Query 046793
Match_columns 237
No_of_seqs 174 out of 764
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:24:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.0 7E-05 2.4E-09 61.4 10.9 99 77-182 43-145 (174)
2 3but_A Uncharacterized protein 97.9 0.00015 5E-09 57.2 12.2 80 95-178 16-100 (136)
3 1xo8_A AT1G01470; structural g 97.7 2.8E-05 9.5E-10 62.3 4.9 101 77-183 20-123 (151)
4 2knc_B Integrin beta-3; transm 33.0 40 0.0014 23.3 3.4 19 54-72 15-33 (79)
5 2bn5_B U1 small nuclear ribonu 31.4 21 0.00071 19.1 1.2 8 27-34 10-17 (26)
6 3s8f_C Cytochrome C oxidase po 27.0 37 0.0013 19.8 2.0 15 58-72 10-24 (34)
7 2k9j_B Integrin beta-3; transm 25.2 88 0.003 19.0 3.6 19 54-72 14-32 (43)
8 1zza_A Stannin, AG8_1; helix, 18.8 88 0.003 21.5 2.8 27 52-78 16-42 (90)
9 1nrp_R Receptor based peptide 18.1 27 0.00093 18.6 0.1 16 105-120 8-23 (26)
10 1afo_A Glycophorin A; integral 17.1 74 0.0025 19.1 1.9 21 54-74 12-32 (40)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=97.96 E-value=7e-05 Score=61.38 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=74.9
Q ss_pred CCcEEEEeeEEEEecCCceeEEEEEEEEEeCCCceeeEEEeCcEEEEEEeCCeEEeeccCCCCc-eeecCCCeEEEEEEE
Q 046793 77 KGPKYYIDNLIPINQSSYYDVIYNFSIRSKNPNCHMGIIYQNDGIVSLSLKQQVIAIGNGKFPK-FYHGTKKSMLFNLLL 155 (237)
Q Consensus 77 ~~P~f~V~s~~v~nlss~ls~~~~ltl~a~NPN~k~~i~Y~~~~v~v~~Y~g~~Lg~~~~~vP~-F~q~~kntt~v~~~l 155 (237)
+.|+++++++++-+++ ....+|.+.++++|||. ..+.+.+++.++. -+|..|+ +|..+. +..++++++.+.+.+
T Consensus 43 ~~PeV~v~~v~~~~~~-l~~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~-vnG~~la--sG~s~~~~tIpa~g~~~v~Vpv 117 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVT-RDGVDYHAKVSVKNPYS-QSIPICQISYILK-SATRTIA--SGTIPDPGSLVGSGTTVLDVPV 117 (174)
T ss_dssp CCCEEEEEEEEEEEEC-SSSEEEEEEEEEEECSS-SCCBCCSEEEEEE-ESSSCEE--EEEESCCCBCCSSEEEEEEEEE
T ss_pred CCCEEEEEEeEEeccc-cceEEEEEEEEEECCCC-CCccccceEEEEE-ECCEEEE--EEecCCCceECCCCcEEEEEEE
Confidence 6899999999983222 23588999999999997 7999999999999 8999999 999875 778889999998887
Q ss_pred EEecChhhHHHHhcC---CceEEEEEEEEE
Q 046793 156 NFKHPKEIEDILKDE---KIQLPLSLLINV 182 (237)
Q Consensus 156 ~g~l~~~~~~~L~~~---~g~V~l~v~~~~ 182 (237)
+.. .....++..+ .+.++.++++..
T Consensus 118 ~v~--~~~l~~~~~~l~~~~~i~Y~L~g~L 145 (174)
T 1yyc_A 118 KVA--YSIAVSLMKDMCTDWDIDYQLDIGL 145 (174)
T ss_dssp EES--HHHHHHTCCCCCSSEEECEEEEEEE
T ss_pred EEE--HHHHHHHHHhcCCCCccceEEEEEE
Confidence 654 2222222233 346776666653
No 2
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.94 E-value=0.00015 Score=57.17 Aligned_cols=80 Identities=8% Similarity=0.049 Sum_probs=64.3
Q ss_pred eeEEEEEEEEEeCCCceeeEEEeCcEEEEEEeCCeEEeeccCC-CCceeecCCCeEEEEEEEEEe---cChhhHHHHhcC
Q 046793 95 YDVIYNFSIRSKNPNCHMGIIYQNDGIVSLSLKQQVIAIGNGK-FPKFYHGTKKSMLFNLLLNFK---HPKEIEDILKDE 170 (237)
Q Consensus 95 ls~~~~ltl~a~NPN~k~~i~Y~~~~v~v~~Y~g~~Lg~~~~~-vP~F~q~~kntt~v~~~l~g~---l~~~~~~~L~~~ 170 (237)
-...|.+.+++.|||. ..+.++..+.+++ .+|..+| +|. ...+..++.+.+.+.+.+.-+ +.+...+.++++
T Consensus 16 ~~t~~~~~l~V~NPN~-~~l~i~gl~y~v~-lng~~la--~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~ng 91 (136)
T 3but_A 16 SQTEIVALAKVRNEDV-VPIVVSGYHYTIE-MNGVKVA--DGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIANG 91 (136)
T ss_dssp SEEEEEEEEEEECCSS-SCEEEEEEEEEEE-ETTEEEE--EEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHHTT
T ss_pred cEEEEEEEEEEeCCCC-cceeeeceEEEEE-ECCEEEE--eeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhhcC
Confidence 4678999999999996 7999999999999 9999999 997 677889999988888887766 666666666654
Q ss_pred -CceEEEEE
Q 046793 171 -KIQLPLSL 178 (237)
Q Consensus 171 -~g~V~l~v 178 (237)
++.+.+++
T Consensus 92 e~s~l~i~~ 100 (136)
T 3but_A 92 EKTKIRVAI 100 (136)
T ss_dssp SEEEEEEEE
T ss_pred CceEEEEEE
Confidence 44444333
No 3
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=97.74 E-value=2.8e-05 Score=62.31 Aligned_cols=101 Identities=13% Similarity=0.067 Sum_probs=73.9
Q ss_pred CCcEEEEeeEEEEecCCceeEEEEEEEEEeCCCceeeEEEeCcEEEEEEeCCeEEeeccCCCCc-eeecCCCeEEEEEEE
Q 046793 77 KGPKYYIDNLIPINQSSYYDVIYNFSIRSKNPNCHMGIIYQNDGIVSLSLKQQVIAIGNGKFPK-FYHGTKKSMLFNLLL 155 (237)
Q Consensus 77 ~~P~f~V~s~~v~nlss~ls~~~~ltl~a~NPN~k~~i~Y~~~~v~v~~Y~g~~Lg~~~~~vP~-F~q~~kntt~v~~~l 155 (237)
+.|+++++++++-+++ ....+|.+.++++|||. ..+.+++.+.++. -+|..++ +|..+. +..++++++.+.+.+
T Consensus 20 ~~P~v~v~~v~~~~~~-~~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~-vng~~la--sG~~~~~~~ipa~g~~~v~vpv 94 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVN-RDSVEYLAKVSVTNPYS-HSIPICEISFTFH-SAGREIG--KGKIPDPGSLKAKDMTALDIPV 94 (151)
T ss_dssp CSCCCBCSEEEECCCT-TTEECEEEEEEEECSSS-SCCCCEEEEEEEE-SSSSCEE--EEEEEECCCCSSSSEEEEEECC
T ss_pred CCCEEEEEEeEEeccC-cceeEEEEEEEEECCCC-CCcccccEEEEEE-ECCEEEE--EEecCCCcEECCCCcEEEEEEE
Confidence 6799999999982222 23568999999999997 7999999999999 8999999 998864 778889999888776
Q ss_pred EEec--ChhhHHHHhcCCceEEEEEEEEEE
Q 046793 156 NFKH--PKEIEDILKDEKIQLPLSLLINVP 183 (237)
Q Consensus 156 ~g~l--~~~~~~~L~~~~g~V~l~v~~~~~ 183 (237)
+... -......+.. .+.++.+++++..
T Consensus 95 ~v~~~~l~~~~~~l~~-~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 95 VVPYSILFNLARDVGV-DWDIDYELQIGLT 123 (151)
T ss_dssp CEEHHHHHHHHHHHHH-HSEEEEEEEEEEE
T ss_pred EEEHHHHHHHHHhccc-CCcccEEEEEEEE
Confidence 6541 1112223322 3567777666543
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.00 E-value=40 Score=23.33 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhhe
Q 046793 54 LLLFIVALILLLIFIIFLF 72 (237)
Q Consensus 54 ~~ll~lill~gi~~~i~~l 72 (237)
+.+++.++++|++++++|-
T Consensus 15 ~gvi~gilliGllllliwk 33 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556777777777774
No 5
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=31.44 E-value=21 Score=19.06 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=5.9
Q ss_pred CCCCCCCC
Q 046793 27 NRIHPRPH 34 (237)
Q Consensus 27 ~r~pp~~~ 34 (237)
|.||||+-
T Consensus 10 fsvppppi 17 (26)
T 2bn5_B 10 FSVPPPPI 17 (26)
T ss_dssp CSCCCCSC
T ss_pred ecCCCCCc
Confidence 77888873
No 6
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=27.04 E-value=37 Score=19.84 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhhe
Q 046793 58 IVALILLLIFIIFLF 72 (237)
Q Consensus 58 ~lill~gi~~~i~~l 72 (237)
+.++++|++++++|+
T Consensus 10 ~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 10 AVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 344556666666664
No 7
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=25.16 E-value=88 Score=18.99 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhhe
Q 046793 54 LLLFIVALILLLIFIIFLF 72 (237)
Q Consensus 54 ~~ll~lill~gi~~~i~~l 72 (237)
..++..++++|++.+++|-
T Consensus 14 ~gvi~~ivliGl~lLliwk 32 (43)
T 2k9j_B 14 LSVMGAILLIGLAALLIWK 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556667877777773
No 8
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=18.81 E-value=88 Score=21.54 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhheeeecCC
Q 046793 52 VSLLLFIVALILLLIFIIFLFVVRPKG 78 (237)
Q Consensus 52 ~~~~ll~lill~gi~~~i~~lv~rP~~ 78 (237)
+++++++.+..+|+.+...|..+|-++
T Consensus 16 tv~viliavaalg~li~gcwcylrlqr 42 (90)
T 1zza_A 16 TVIVILIAIAALGALILGCWCYLRLQR 42 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSCS
T ss_pred EehhHHHHHHHHHHHHHHHHHHHHHHH
No 9
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=18.13 E-value=27 Score=18.59 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=0.0
Q ss_pred EeCCCceeeEEEeCcE
Q 046793 105 SKNPNCHMGIIYQNDG 120 (237)
Q Consensus 105 a~NPN~k~~i~Y~~~~ 120 (237)
.+|||+|..=.+++-+
T Consensus 8 lrnpndkyepfwedee 23 (26)
T 1nrp_R 8 LRNPNDKYEPFWEDEE 23 (26)
T ss_pred hcCCCcccCccccccc
No 10
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=17.13 E-value=74 Score=19.14 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhheee
Q 046793 54 LLLFIVALILLLIFIIFLFVV 74 (237)
Q Consensus 54 ~~ll~lill~gi~~~i~~lv~ 74 (237)
.+++++.+++|++..++.+.|
T Consensus 12 i~lII~~vmaGiIG~IllI~y 32 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISY 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Done!