BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046796
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JQG|A Chain A, Crystal Structure Of The Carboxypeptidase A From
Helicoverpa Armigera
Length = 433
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 1 MDVKE-DVQENIREPLMPIENILAHEDGGAGDR-------TNNKKVNPCMVY-------- 44
+DV E D+ NI ++P+ N + GDR T N CM
Sbjct: 200 IDVTESDLINNIDWIILPVANPDGYVHTFGGDRYWRKNRATGYMAGNLCMGVDLNRNFGM 259
Query: 45 ---FSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMI 95
++ +VC S F + +S P S IR+ IA +++ I +FG+MI
Sbjct: 260 NWGTASSSSVC-SDTFHGRSAFSEPESSVIRDIIAEHRNRMALYLDIHSFGSMI 312
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 1 MDVKEDVQENIREPLMPIENILAHE--DGGAGDRTNNKKVNPCMVYFSTP 48
M D +N R+P+ +N A D GAG N+ ++P +VY +TP
Sbjct: 455 MMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATP 504
>pdb|3E80|A Chain A, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
pdb|3E80|B Chain B, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
pdb|3E80|C Chain C, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
Length = 749
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 13/44 (29%)
Query: 24 HEDGGAGDRTNNKKVNPCMVYFSTPIAV-CGSYAFGSCAGYSSP 66
H+D GA +Y+ P+A+ GSY GS GY+SP
Sbjct: 385 HQDAGA-----------FQIYYKGPLAIDAGSYT-GSSGGYNSP 416
>pdb|3E7J|A Chain A, Heparinaseii H202a/y257a Double Mutant Complexed With A
Heparan Sulfate Tetrasaccharide Substrate
pdb|3E7J|B Chain B, Heparinaseii H202a/y257a Double Mutant Complexed With A
Heparan Sulfate Tetrasaccharide Substrate
Length = 749
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 13/44 (29%)
Query: 24 HEDGGAGDRTNNKKVNPCMVYFSTPIAV-CGSYAFGSCAGYSSP 66
H+D GA +Y+ P+A+ GSY GS GY+SP
Sbjct: 385 HQDAGA-----------FQIYYKGPLAIDAGSYT-GSSGGYNSP 416
>pdb|2FUT|A Chain A, Crystal Structure Of Heparinase Ii Complexed With A
Disaccharide Product
pdb|2FUT|B Chain B, Crystal Structure Of Heparinase Ii Complexed With A
Disaccharide Product
Length = 748
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 13/44 (29%)
Query: 24 HEDGGAGDRTNNKKVNPCMVYFSTPIAV-CGSYAFGSCAGYSSP 66
H+D GA +Y+ P+A+ GSY GS GY+SP
Sbjct: 384 HQDAGA-----------FQIYYKGPLAIDAGSYT-GSSGGYNSP 415
>pdb|2FUQ|A Chain A, Crystal Structure Of Heparinase Ii
pdb|2FUQ|B Chain B, Crystal Structure Of Heparinase Ii
Length = 747
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 13/44 (29%)
Query: 24 HEDGGAGDRTNNKKVNPCMVYFSTPIAV-CGSYAFGSCAGYSSP 66
H+D GA +Y+ P+A+ GSY GS GY+SP
Sbjct: 383 HQDAGA-----------FQIYYKGPLAIDAGSYT-GSSGGYNSP 414
>pdb|3BZT|A Chain A, Crystal Structural Of The Mutated P263a Escu C-Terminal
Domain
pdb|3C03|A Chain A, Crystal Structure Of The Escu C-Terminal Domain With
P263a Mutation, Space Group P 1 21 1
Length = 137
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 2 DVKEDVQENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSC 60
+VK + ++ P + E H + +G NN K + +V +T IA+C Y G
Sbjct: 11 EVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNATHIAICLYYKLGET 69
>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
Length = 371
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 5 EDVQENIREPLMPIENILA---HEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFG 58
E+ + I E E +LA + DG G+ + KK+ + P+ V G+YA G
Sbjct: 133 ENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIG 189
>pdb|3BZP|A Chain A, Crystal Structural Of The Mutated N262a Escu C-Terminal
Domain
Length = 137
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 2 DVKEDVQENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSC 60
+VK + ++ P + E H + +G NN K + +V T IA+C Y G
Sbjct: 11 EVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKAPTHIAICLYYKLGET 69
>pdb|3BZR|A Chain A, Crystal Structure Of Escu C-Terminal Domain With N262d
Mutation, Space Group P 41 21 2
pdb|3BZS|A Chain A, Crystal Structure Of Escu C-Terminal Domain With N262d
Mutation, Space Group P 21 21 21
Length = 137
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 2 DVKEDVQENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSC 60
+VK + ++ P + E H + +G NN K + +V T IA+C Y G
Sbjct: 11 EVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKDPTHIAICLYYKLGET 69
>pdb|3BWS|A Chain A, Crystal Structure Of The Leptospiral Antigen Lp49
pdb|3BWS|B Chain B, Crystal Structure Of The Leptospiral Antigen Lp49
Length = 433
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 36 KKVNPCMVYFSTPIAVC----GSYAFGSCAGYSSPTQSAIREDIAL 77
KKV + F P + G Y + SC G + PT+ +++ + L
Sbjct: 335 KKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVL 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,997,038
Number of Sequences: 62578
Number of extensions: 107276
Number of successful extensions: 157
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 11
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)