BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046796
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana
GN=At2g48020 PE=2 SV=2
Length = 463
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 12/91 (13%)
Query: 9 ENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQ 68
+ +REPL+ + AG + + P MVY ST +AVCGS+AFGSCAGYSSP Q
Sbjct: 6 DAVREPLV--------DKNMAGSKPDQ----PWMVYLSTFVAVCGSFAFGSCAGYSSPAQ 53
Query: 69 SAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
+AIR D++L++AE+S+FGS+LTFGAMIGAIT
Sbjct: 54 AAIRNDLSLTIAEFSLFGSLLTFGAMIGAIT 84
>sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana
GN=At5g18840 PE=2 SV=2
Length = 482
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 3/77 (3%)
Query: 22 LAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAE 81
L HED ++ + + MV FST +AVCGS+ FGSC GYS+PTQS+IR+D+ LSLAE
Sbjct: 26 LTHEDD---EKESENNESYLMVLFSTFVAVCGSFEFGSCVGYSAPTQSSIRQDLNLSLAE 82
Query: 82 YSVFGSILTFGAMIGAI 98
+S+FGSILT GAM+GA+
Sbjct: 83 FSMFGSILTIGAMLGAV 99
>sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana
GN=At3g05150 PE=2 SV=1
Length = 470
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 42 MVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
MVY ST IAVCGSY FG+C GYS+PTQ I E++ LS +++SVFGSIL GA++GAIT
Sbjct: 34 MVYLSTIIAVCGSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAIT 91
>sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2
PE=2 SV=1
Length = 470
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 50/71 (70%), Gaps = 4/71 (5%)
Query: 32 RTNNKKVNPC----MVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGS 87
R N +N C +V FST ++VCGS+ FG AGYSS Q+ I D+ LS+A+YS+FGS
Sbjct: 17 RKNQNDINECRITAVVLFSTFVSVCGSFCFGCAAGYSSVAQTGIINDLGLSVAQYSMFGS 76
Query: 88 ILTFGAMIGAI 98
I+TFG MIGAI
Sbjct: 77 IMTFGGMIGAI 87
>sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana
GN=At1g54730 PE=2 SV=2
Length = 470
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 40/49 (81%)
Query: 49 IAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGA 97
+AV GS+ FGS GYSSP QS + +++ LS+AEYS+FGSILT GAMIGA
Sbjct: 38 VAVSGSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGA 86
>sp|Q9LTP6|EDL13_ARATH Putative sugar transporter ERD6-like 13 OS=Arabidopsis thaliana
GN=At3g20460 PE=3 SV=2
Length = 488
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 4 KEDVQENIRE-PLMPIENILAHEDGGAGDRTNN--KKVNPC--MVYFSTPIAVCGSYAFG 58
K +QE+I PL+ I + G R NN ++ P ++ F+T A+CG++++G
Sbjct: 9 KVKIQEDIESVPLLQKVKIQEDIESVKGIRVNNDGEEDGPVTLILLFTTFTALCGTFSYG 68
Query: 59 SCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGA 97
+ AG++SP Q+ I + LSLAE+S FG++LT G ++GA
Sbjct: 69 TAAGFTSPAQTGIMAGLNLSLAEFSFFGAVLTIGGLVGA 107
>sp|Q9M0Z9|EDL15_ARATH Sugar transporter ERD6-like 15 OS=Arabidopsis thaliana
GN=At4g04760 PE=3 SV=2
Length = 478
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/50 (54%), Positives = 41/50 (82%)
Query: 49 IAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI 98
+ CG++AFG GYS+PTQ++I +D+ LS+A+YS+FGSILT G ++GA+
Sbjct: 37 VGSCGAFAFGCIIGYSAPTQTSIMKDLNLSIADYSLFGSILTVGLILGAL 86
>sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3
Length = 496
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 43 VYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI 98
V+ ST +AV GS+ G G+SS Q+ I +D++LS+AEYS+FGSILT G +IGA+
Sbjct: 58 VFLSTFVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAV 113
>sp|Q8VZT3|EDL12_ARATH Sugar transporter ERD6-like 12 OS=Arabidopsis thaliana GN=SUGTL5
PE=2 SV=1
Length = 462
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 32 RTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTF 91
+ ++ P ++ FST I V S+ FG+ GY++ T S+I D+ LSLA++S+FGS+ TF
Sbjct: 16 KEDSANTTPLLI-FSTFIIVSASFTFGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTF 74
Query: 92 GAMIGAI 98
G MIGAI
Sbjct: 75 GGMIGAI 81
>sp|Q93Z80|EDL10_ARATH Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana
GN=At3g05160 PE=2 SV=1
Length = 458
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 54/80 (67%), Gaps = 6/80 (7%)
Query: 19 ENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALS 78
E +L HE+ DR +++++ C++ ST +AVC S+++G GY+S ++AI +++ LS
Sbjct: 3 EGLLRHEN----DR-DDRRITACVI-LSTFVAVCSSFSYGCANGYTSGAETAIMKELDLS 56
Query: 79 LAEYSVFGSILTFGAMIGAI 98
+A++S FGS L G +GA+
Sbjct: 57 MAQFSAFGSFLNLGGAVGAL 76
>sp|Q94AF9|EDL11_ARATH Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana
GN=At3g05165 PE=2 SV=2
Length = 467
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 55/80 (68%), Gaps = 6/80 (7%)
Query: 19 ENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALS 78
E +L H++ DR +++++ C++ ST +AVC ++++G AGY+S ++AI +++ LS
Sbjct: 12 EGLLQHQN----DR-DDRRITACVI-LSTFVAVCSAFSYGCAAGYTSGAETAIMKELDLS 65
Query: 79 LAEYSVFGSILTFGAMIGAI 98
+A++S FGS L G +GA+
Sbjct: 66 MAQFSAFGSFLNVGGAVGAL 85
>sp|Q94CI7|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1
PE=2 SV=2
Length = 474
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 37 KVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIG 96
++ C++ ST +AVCGS++FG GY+S ++ + +D+ LS+A++S FGS T GA IG
Sbjct: 26 RITACVI-LSTFVAVCGSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGAAIG 84
Query: 97 AI 98
A+
Sbjct: 85 AL 86
>sp|Q8GXK5|EDL14_ARATH Sugar transporter ERD6-like 14 OS=Arabidopsis thaliana
GN=At4g04750 PE=2 SV=2
Length = 482
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 34 NNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGA 93
+N P ++ F+ + CG+ +FG GY++PTQS+I +D+ LS+A++S FGSILT G
Sbjct: 29 SNASTRPFVLAFT--VGSCGALSFGCIVGYTAPTQSSIMKDLNLSIADFSFFGSILTVGL 86
Query: 94 MIGAI 98
++GA+
Sbjct: 87 ILGAL 91
>sp|Q7XA64|ERDL9_ARATH Sugar transporter ERD6-like 9 OS=Arabidopsis thaliana
GN=At3g05155 PE=2 SV=1
Length = 327
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 32 RTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTF 91
+ + P +V F+T I V S++FG G+++ T ++I ED+ LS+ ++SVFGS+LTF
Sbjct: 17 KEESANTTPFLV-FTTFIIVSASFSFGVALGHTAGTMASIMEDLDLSITQFSVFGSLLTF 75
Query: 92 GAMIGAI 98
G MIGA+
Sbjct: 76 GGMIGAL 82
>sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220
PE=1 SV=1
Length = 487
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 36/50 (72%)
Query: 49 IAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI 98
I G FG GYSSPTQ+AI +D+ L+++EYSVFGS+ GAM+GAI
Sbjct: 54 IVALGPIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAI 103
>sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450
PE=2 SV=1
Length = 488
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 36/50 (72%)
Query: 49 IAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI 98
I G FG GYSSPTQ+AI +D+ L+++EYSVFGS+ GAM+GAI
Sbjct: 55 IVALGPIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAI 104
>sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2
PE=2 SV=1
Length = 478
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 37 KVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIG 96
++ C++ ST IAVCGS++FG GY+S + I +D+ LS+A++S F S+ T GA IG
Sbjct: 30 RITACVI-LSTFIAVCGSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGAAIG 88
Query: 97 AI 98
A+
Sbjct: 89 AL 90
>sp|Q4F7G0|ERDL2_ARATH Sugar transporter ERD6-like 2 OS=Arabidopsis thaliana GN=SUGTL3
PE=2 SV=1
Length = 462
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 45 FSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI 98
ST + V GS+ +G YSSP QS I E++ LS+A+YS F S++T G MI A+
Sbjct: 27 LSTSVVVAGSFCYGCAMSYSSPAQSKIMEELGLSVADYSFFTSVMTLGGMITAV 80
>sp|Q9SCW7|ERDL1_ARATH Sugar transporter ERD6-like 1 OS=Arabidopsis thaliana GN=SUGTL4
PE=2 SV=2
Length = 464
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 41 CMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGA 97
C + ST +AV GS+ +G YSSP QS I E++ LS+A+YS F S++T G MI A
Sbjct: 25 CGLLLSTSVAVTGSFVYGCAMSYSSPAQSKIMEELGLSVADYSFFTSVMTLGGMITA 81
>sp|Q9UGQ3|GTR6_HUMAN Solute carrier family 2, facilitated glucose transporter member 6
OS=Homo sapiens GN=SLC2A6 PE=1 SV=2
Length = 507
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 30 GDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIRE----DIALSLAEYSVF 85
GDR + V+ +T AV G+++FG Y+SP A+ D+ L+ ++ S F
Sbjct: 25 GDRARVGTLQNKRVFLATFAAVLGNFSFGYALVYTSPVIPALERSLDPDLHLTKSQASWF 84
Query: 86 GSILTFGAMIGAIT 99
GS+ T GA G ++
Sbjct: 85 GSVFTLGAAAGGLS 98
>sp|Q8GX69|BGA16_ARATH Beta-galactosidase 16 OS=Arabidopsis thaliana GN=BGAL16 PE=2 SV=2
Length = 815
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 45 FSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGA 93
F TP CGSY+ GSC SP A+ + L + SV TFG
Sbjct: 753 FGTPNGSCGSYSIGSC---HSPNSLAVVQKACLKKSRCSVPVWSKTFGG 798
>sp|P49676|BGAL_BRAOL Beta-galactosidase OS=Brassica oleracea PE=2 SV=1
Length = 828
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 23 AHEDGGAGDRTNNKKVNPC-MVYFSTPIAVCGSYAFGSCAGYSSPTQSAIRE 73
AHE NN+ ++ F P CGS+A GSC G + +E
Sbjct: 742 AHEHNKVELSCNNRPISAVKFASFGNPSGQCGSFAAGSCEGAKDAVKVVAKE 793
>sp|Q9SCW1|BGAL1_ARATH Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1
Length = 847
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 11 IREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSS 65
+ +PL P AH G G + K F TP CGSY GSC + S
Sbjct: 759 VNKPLHP----KAHLQCGPGQKITTVK----FASFGTPEGTCGSYRQGSCHAHHS 805
>sp|Q9SCV5|BGAL7_ARATH Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2
Length = 826
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 23 AHEDGGAGDRTNNKKVNPC-MVYFSTPIAVCGSYAFGSCAGYSSPTQSAIRE 73
AHE +N+ ++ F P+ CGS+A G+C G ++ +E
Sbjct: 740 AHEHNKVELSCHNRPISAVKFASFGNPLGHCGSFAVGTCQGDKDAAKTVAKE 791
>sp|Q6FKS8|SPB4_CANGA ATP-dependent rRNA helicase SPB4 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SPB4 PE=3 SV=1
Length = 617
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 34 NNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILT 90
NN + C+VYFST ++V Y + Y T +RED+ + S+ G + T
Sbjct: 258 NNIRFKKCIVYFSTCVSVTFFYQY---LKYLQQTDKTLREDLQV----ISIHGKLTT 307
>sp|Q9JJZ1|GTR8_RAT Solute carrier family 2, facilitated glucose transporter member 8
OS=Rattus norvegicus GN=Slc2a8 PE=1 SV=1
Length = 478
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 43 VYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDI--ALSLAEY--SVFGSILT 90
V+ +T A G +FG GYSSP ++R AL L + S FG+++T
Sbjct: 26 VFLATFAAALGPLSFGFALGYSSPAIPSLRRTAPPALRLGDTAASWFGAVVT 77
>sp|Q5R608|GTR3_PONAB Solute carrier family 2, facilitated glucose transporter member 3
OS=Pongo abelii GN=SLC2A3 PE=2 SV=1
Length = 496
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 15/78 (19%)
Query: 36 KKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAE-------------- 81
+KV P ++ F+ +A GS+ FG G + + I+E I +L +
Sbjct: 4 QKVTPALI-FAITVATIGSFQFGYNTGVINAPEKIIKEFINKTLTDKGNAPPSEVLLTSL 62
Query: 82 YSVFGSILTFGAMIGAIT 99
+S+ +I + G MIG+ +
Sbjct: 63 WSLSVAIFSVGGMIGSFS 80
>sp|P11169|GTR3_HUMAN Solute carrier family 2, facilitated glucose transporter member 3
OS=Homo sapiens GN=SLC2A3 PE=1 SV=1
Length = 496
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 15/78 (19%)
Query: 36 KKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAE-------------- 81
+KV P ++ F+ +A GS+ FG G + + I+E I +L +
Sbjct: 4 QKVTPALI-FAITVATIGSFQFGYNTGVINAPEKIIKEFINKTLTDKGNAPPSEVLLTSL 62
Query: 82 YSVFGSILTFGAMIGAIT 99
+S+ +I + G MIG+ +
Sbjct: 63 WSLSVAIFSVGGMIGSFS 80
>sp|Q9ZNS0|PLT3_ARATH Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3
PE=3 SV=1
Length = 508
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 57 FGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
FG G S Q IR+D+ ++ + V IL A++G++T
Sbjct: 36 FGYDTGVMSGAQIFIRDDLKINDTQIEVLAGILNLCALVGSLT 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,277,404
Number of Sequences: 539616
Number of extensions: 1393532
Number of successful extensions: 2590
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2565
Number of HSP's gapped (non-prelim): 35
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)