Query 046796
Match_columns 99
No_of_seqs 152 out of 1057
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 07:26:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 98.5 3.4E-08 1.2E-12 74.1 2.0 59 40-98 7-73 (491)
2 3o7q_A L-fucose-proton symport 96.1 0.005 1.7E-07 44.9 4.0 52 47-98 28-79 (438)
3 2gfp_A EMRD, multidrug resista 93.8 0.094 3.2E-06 37.4 5.0 50 49-98 4-53 (375)
4 1pw4_A Glycerol-3-phosphate tr 93.4 0.061 2.1E-06 39.1 3.5 55 43-98 26-80 (451)
5 4aps_A DI-OR tripeptide H+ sym 73.2 4.8 0.00016 29.5 4.6 24 75-98 49-72 (491)
6 2cfq_A Lactose permease; trans 65.1 6.7 0.00023 28.5 3.9 34 65-98 27-61 (417)
7 2xut_A Proton/peptide symporte 56.4 8.7 0.0003 28.4 3.2 30 69-98 37-72 (524)
8 1pw4_A Glycerol-3-phosphate tr 46.0 17 0.00058 25.9 3.2 33 66-98 273-306 (451)
9 3o7q_A L-fucose-proton symport 35.9 40 0.0014 23.8 3.9 28 71-98 286-313 (438)
10 3org_A CMCLC; transporter, tra 8.4 2.8E+02 0.0095 21.8 3.3 21 77-98 231-251 (632)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.49 E-value=3.4e-08 Score=74.06 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHhhhhhhhccceehHhHHHHHhhcC----C----CchHHHHHHHHHHHHHHhhcc
Q 046796 40 PCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIA----L----SLAEYSVFGSILTFGAMIGAI 98 (99)
Q Consensus 40 ~~~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~----i----s~~~~s~i~Si~~lGa~~Gal 98 (99)
+++++.+++++++|++++|||+++++++++.+++.+. . ++.+.+|++|++.+|+++|++
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~ 73 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGA 73 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999998877543 2 234579999999999999986
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=96.13 E-value=0.005 Score=44.88 Aligned_cols=52 Identities=12% Similarity=0.143 Sum_probs=44.4
Q ss_pred HHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796 47 TPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI 98 (99)
Q Consensus 47 ~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal 98 (99)
.++..+..+..|++.+..++.+|.+.++++++..+.+++.++..++..++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~ 79 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPI 79 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444556778899988989999999999999999999999999999988764
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=93.79 E-value=0.094 Score=37.45 Aligned_cols=50 Identities=6% Similarity=-0.043 Sum_probs=42.6
Q ss_pred HHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796 49 IAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI 98 (99)
Q Consensus 49 vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal 98 (99)
+.+++.+..+++.+..++.+|.+.++++.+..+.+++.++..++..++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 53 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQL 53 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888999999999999999999999999999988865
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=93.43 E-value=0.061 Score=39.10 Aligned_cols=55 Identities=9% Similarity=-0.110 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796 43 VYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI 98 (99)
Q Consensus 43 ~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal 98 (99)
.+.......++.+..+++.+..++.++.+.+++ ++..+.+|+.++..++.+++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~ 80 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKF 80 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHH
Confidence 344455566677888999999999999998889 9999999999999999888764
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=73.20 E-value=4.8 Score=29.50 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=21.9
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcc
Q 046796 75 IALSLAEYSVFGSILTFGAMIGAI 98 (99)
Q Consensus 75 ~~is~~~~s~i~Si~~lGa~~Gal 98 (99)
++++..+.+++.++..++..++++
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~ 72 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGT 72 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988865
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=65.13 E-value=6.7 Score=28.52 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=26.6
Q ss_pred hHhHH-HHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796 65 SPTQS-AIREDIALSLAEYSVFGSILTFGAMIGAI 98 (99)
Q Consensus 65 s~~l~-~l~~~~~is~~~~s~i~Si~~lGa~~Gal 98 (99)
.+.++ .++++++++..+.+++.++..++.++|++
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~ 61 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQP 61 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34454 36667899999999999999999888764
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=56.37 E-value=8.7 Score=28.39 Aligned_cols=30 Identities=10% Similarity=-0.035 Sum_probs=25.1
Q ss_pred HHHHhhcC------CCchHHHHHHHHHHHHHHhhcc
Q 046796 69 SAIREDIA------LSLAEYSVFGSILTFGAMIGAI 98 (99)
Q Consensus 69 ~~l~~~~~------is~~~~s~i~Si~~lGa~~Gal 98 (99)
+.+.++++ ++..+.+|+.++..++.+++++
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~ 72 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPL 72 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 45667788 9999999999999999888764
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=46.00 E-value=17 Score=25.92 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=24.5
Q ss_pred HhHHH-HHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796 66 PTQSA-IREDIALSLAEYSVFGSILTFGAMIGAI 98 (99)
Q Consensus 66 ~~l~~-l~~~~~is~~~~s~i~Si~~lGa~~Gal 98 (99)
...|. +++.++++..+.+++.++..++.++|.+
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTL 306 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444 4445888998999999999988888764
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=35.92 E-value=40 Score=23.82 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=22.4
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796 71 IREDIALSLAEYSVFGSILTFGAMIGAI 98 (99)
Q Consensus 71 l~~~~~is~~~~s~i~Si~~lGa~~Gal 98 (99)
+++.++.+..+.+++.++..++.++|.+
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 313 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRF 313 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHH
Confidence 4555688998999999998888888764
No 10
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=8.44 E-value=2.8e+02 Score=21.83 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=12.8
Q ss_pred CCchHHHHHHHHHHHHHHhhcc
Q 046796 77 LSLAEYSVFGSILTFGAMIGAI 98 (99)
Q Consensus 77 is~~~~s~i~Si~~lGa~~Gal 98 (99)
++..+. ++.-+..+++++|.+
T Consensus 231 ~~~~~l-~~~~lGi~~Gl~g~~ 251 (632)
T 3org_A 231 SRTQTL-LYAILGALMGVLGAL 251 (632)
T ss_dssp CCSCTH-HHHHHHHHHHHHHHH
T ss_pred CcHHHH-HHHHHHHHHHHHHHH
Confidence 344556 666666666666654
Done!