BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046799
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RXT|A Chain A, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|B Chain B, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|C Chain C, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|D Chain D, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase
Length = 496
Score = 139 bits (351), Expect = 3e-34, Method: Composition-based stats.
Identities = 64/104 (61%), Positives = 88/104 (84%), Gaps = 1/104 (0%)
Query: 10 EITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQKDFDVFNA 69
E+TDF SFYTLPS+I+ +P + +LKAAYS+YNV T+TPLL LM+DAL++AK K FDVFNA
Sbjct: 393 EVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNA 452
Query: 70 LDVMQNESFLKELKFGPGDGKLHYYLYNYRIRQAVLASELGLVL 113
LD+M+N++FL++LKFG GDG L YYLYN++ ++ A ++G+VL
Sbjct: 453 LDLMENKTFLEKLKFGIGDGNLQYYLYNWKC-PSMGAEKVGIVL 495
>pdb|3IU1|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa
pdb|3IU1|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa
pdb|3IU2|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90096
pdb|3IU2|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90096
pdb|3IWE|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd85646
pdb|3IWE|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd85646
pdb|3JTK|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90055
pdb|3JTK|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90055
Length = 383
Score = 139 bits (349), Expect = 5e-34, Method: Composition-based stats.
Identities = 65/104 (62%), Positives = 88/104 (84%), Gaps = 1/104 (0%)
Query: 10 EITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQKDFDVFNA 69
E+TDF SFYTLPS+I+ +P + +LKAAYS+YNV T+TPLL LM+DAL++AK K FDVFNA
Sbjct: 280 EVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNA 339
Query: 70 LDVMQNESFLKELKFGPGDGKLHYYLYNYRIRQAVLASELGLVL 113
LD+M+N++FL++LKFG GDG L YYLYN++ ++ A ++GLVL
Sbjct: 340 LDLMENKTFLEKLKFGIGDGNLQYYLYNWKC-PSMGAEKVGLVL 382
>pdb|4A95|A Chain A, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|B Chain B, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|C Chain C, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4BBH|A Chain A, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|B Chain B, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|C Chain C, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
Length = 384
Score = 125 bits (314), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 81/111 (72%), Gaps = 1/111 (0%)
Query: 4 ASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQKD 63
+ E +I D SFY+LPS ILGN YSTL AAYS+YNV+T QLM DA+++AK+ +
Sbjct: 275 VNEENGKIKDMISFYSLPSQILGNDKYSTLNAAYSFYNVTTTATFKQLMQDAILLAKRNN 334
Query: 64 FDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYRIRQAVLASELGLVLL 114
FDVFNAL+VMQN+S ++LKFG GDG L YYLYN++ + + +G+VLL
Sbjct: 335 FDVFNALEVMQNKSVFEDLKFGEGDGSLKYYLYNWKC-ASFAPAHVGIVLL 384
>pdb|4B10|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B11|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B12|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B13|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B14|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
Length = 385
Score = 125 bits (314), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 81/111 (72%), Gaps = 1/111 (0%)
Query: 4 ASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQKD 63
+ E +I D SFY+LPS ILGN YSTL AAYS+YNV+T QLM DA+++AK+ +
Sbjct: 276 VNEENGKIKDMISFYSLPSQILGNDKYSTLNAAYSFYNVTTTATFKQLMQDAILLAKRNN 335
Query: 64 FDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYRIRQAVLASELGLVLL 114
FDVFNAL+VMQN+S ++LKFG GDG L YYLYN++ + + +G+VLL
Sbjct: 336 FDVFNALEVMQNKSVFEDLKFGEGDGSLKYYLYNWKC-ASFAPAHVGIVLL 385
>pdb|2WUU|A Chain A, Structure Of N-Myristoyltransferase From L. Donovani
Length = 421
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 10 EITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQKDFDVFNA 69
++TDF SFY +PS+++GN NY+ L AAY +Y +T PL QL+ D LIVA + FDV N
Sbjct: 318 KVTDFFSFYRIPSTVIGNSNYNILNAAYVHYYAATSMPLHQLILDLLIVAHSRGFDVCNM 377
Query: 70 LDVMQNESFLKELKFGPGDGKLHYYLYNYRIRQAVLASELGLVLL 114
++++ N SF+++LKFG GDG L YY YN+ + + S++ LV+L
Sbjct: 378 VEILDNRSFVEQLKFGAGDGHLRYYFYNWAYPK-IKPSQVALVML 421
>pdb|3H5Z|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|4A2Z|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A30|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A31|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A32|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A33|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
Length = 438
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 10 EITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQKDFDVFNA 69
++TDF SFY +PS+++GN NY+ L AAY +Y +T PL QL+ D LIVA + FDV N
Sbjct: 335 KVTDFFSFYRIPSTVIGNSNYNLLNAAYVHYYAATSIPLHQLILDLLIVAHSRGFDVCNM 394
Query: 70 LDVMQNESFLKELKFGPGDGKLHYYLYNYRIRQAVLASELGLVLL 114
++++ N SF+++LKFG GDG L YY YN+ + + S++ LV+L
Sbjct: 395 VEILDNRSFVEQLKFGAGDGHLRYYFYNWAYPK-IKPSQVALVML 438
>pdb|2WSA|A Chain A, Crystal Structure Of Leishmania Major N-
Myristoyltransferase (Nmt) With Bound Myristoyl-Coa And
A Pyrazole Sulphonamide Ligand (Ddd85646)
Length = 438
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 10 EITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQKDFDVFNA 69
++TDF SFY +PS+++GN NY+ L AAY +Y +T PL QL+ D LIVA + FDV N
Sbjct: 335 KVTDFFSFYRIPSTVIGNSNYNLLNAAYVHYYAATSIPLHQLILDLLIVAHSRGFDVCNM 394
Query: 70 LDVMQNESFLKELKFGPGDGKLHYYLYNYRIRQAVLASELGLVLL 114
++++ N SF+++LKFG GDG L YY YN+ + + S++ LV+L
Sbjct: 395 VEILDNRSFVEQLKFGAGDGHLRYYFYNWAYPK-IKPSQVALVML 438
>pdb|2NMT|A Chain A, Myristoyl-Coa:protein N-Myristoyltransferase Bound To
Myristoyl-Coa And Peptide Analogs
pdb|1IIC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IIC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IID|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae N-
Myristoyltransferase With Bound S-(2-Oxo)pentadecylcoa
And The Octapeptide Glyaskla
Length = 422
Score = 90.9 bits (224), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/118 (43%), Positives = 67/118 (56%), Gaps = 18/118 (15%)
Query: 1 FLVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVST---------------- 44
++V P+ +ITDF SFY+LP +IL N Y L Y YY +
Sbjct: 281 YVVEQPDG-KITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKA 339
Query: 45 -KTPLLQLMNDALIVAKQKDFDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYRIR 101
KT L +L+ DA I+AK + DVFNAL N FL +LKFGPGDG L++YL+NYR +
Sbjct: 340 LKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAK 397
>pdb|2P6E|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6F|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
Length = 455
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 67/118 (56%), Gaps = 18/118 (15%)
Query: 1 FLVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVST---------------- 44
++V P+ +ITDF SFY+LP +IL N Y L Y YY +
Sbjct: 314 YVVEQPDG-KITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKA 372
Query: 45 -KTPLLQLMNDALIVAKQKDFDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYRIR 101
KT L +L+ DA I+AK + DVFNAL N FL +LKFGPGDG L++YL+NYR +
Sbjct: 373 LKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAK 430
>pdb|1NMT|A Chain A, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|B Chain B, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|C Chain C, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1IYK|A Chain A, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYK|B Chain B, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYL|A Chain A, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|B Chain B, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|C Chain C, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|D Chain D, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
Length = 392
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 3 VASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVST-------KTPLLQLMNDA 55
V E ITD+ S+Y LP ++L N + L AY +Y S K L +L+ DA
Sbjct: 261 VVEDENGIITDYFSYYLLPFTVLDNAQHDELGIAYLFYYASDSFEKPNYKKRLNELITDA 320
Query: 56 LIVAKQKDFDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYR 99
LI +K+ DVFN L N FLK+ KFG GDG L+YYL+NYR
Sbjct: 321 LITSKKFGVDVFNCLTCQDNTYFLKDCKFGSGDGFLNYYLFNYR 364
>pdb|2WDC|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In
Complex With Glycerol
pdb|2WDD|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In
Complex With Sulfate
pdb|2WDE|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In
Complex With Thiosulfate
pdb|2WDF|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb
Length = 562
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 21 PSSILGNPNYSTLKAAYSYYNVSTKTPLLQLMN 53
P ++G P Y T +A YY V TPL L++
Sbjct: 55 PKPLMGRPGYLTGEAILRYYGVERGTPLAYLLS 87
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 42 VSTKTPLL-QLMNDALIVAKQKDFDVFNALDVMQNESFLKELK 83
V+T P+ +++ A + K+K F V LDV+++E+F+ ELK
Sbjct: 124 VNTTVPIAAEVLKKAGVYDKRKLFGV-TTLDVIRSETFVAELK 165
>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|C Chain C, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|D Chain D, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|E Chain E, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|F Chain F, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
Length = 106
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 20 LPSSILGNPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQKDFDVFNALDVMQNE--- 76
LP + P+Y + YSYY +T P L + +D +N+L M E
Sbjct: 22 LPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAM 81
Query: 77 -SFLKELKF 84
+++ E+K
Sbjct: 82 SAYITEMKL 90
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 25 LGNPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQKDFDVFNALDVMQNESFLKELKF 84
LGN S ++A + Y V ++ +DA I+ + D D L ++ +E +K+ +F
Sbjct: 105 LGNAFLSHVRAVDAIYQV------VRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEF 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,518,585
Number of Sequences: 62578
Number of extensions: 123982
Number of successful extensions: 242
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 15
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)