Query 046799
Match_columns 114
No_of_seqs 103 out of 224
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 04:35:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02799 NMT_C: Myristoyl-CoA: 100.0 2.9E-58 6.3E-63 355.5 9.5 112 1-113 78-190 (190)
2 KOG2779 N-myristoyl transferas 100.0 6.6E-54 1.4E-58 357.5 10.3 112 1-114 310-421 (421)
3 COG5092 NMT1 N-myristoyl trans 100.0 4.9E-44 1.1E-48 297.0 9.1 112 1-114 313-451 (451)
4 PLN02706 glucosamine 6-phospha 80.7 16 0.00034 25.1 7.7 38 49-86 104-141 (150)
5 PF00583 Acetyltransf_1: Acety 75.8 4.8 0.0001 24.6 3.4 71 8-84 4-82 (83)
6 PF13420 Acetyltransf_4: Acety 66.0 39 0.00086 23.0 7.8 78 1-88 53-138 (155)
7 PRK10975 TDP-fucosamine acetyl 62.4 20 0.00044 26.1 4.9 46 49-96 145-193 (194)
8 COG3040 Blc Bacterial lipocali 49.0 27 0.00058 27.3 3.7 33 37-69 134-166 (174)
9 PF13527 Acetyltransf_9: Acety 47.4 80 0.0017 20.7 7.5 76 2-85 45-125 (127)
10 PRK10146 aminoalkylphosphonic 44.5 60 0.0013 21.7 4.6 39 49-87 95-136 (144)
11 COG5014 Predicted Fe-S oxidore 43.4 17 0.00038 29.1 2.0 39 31-69 51-97 (228)
12 KOG3139 N-acetyltransferase [G 40.9 76 0.0016 24.6 5.0 64 32-95 81-152 (165)
13 TIGR02382 wecD_rffC TDP-D-fuco 39.0 92 0.002 22.7 5.1 39 49-87 142-183 (191)
14 PRK09539 tRNA-splicing endonuc 38.3 1.6E+02 0.0035 21.7 8.2 65 12-100 55-121 (124)
15 PRK03624 putative acetyltransf 35.4 1E+02 0.0022 19.9 4.5 43 48-91 86-131 (140)
16 PRK09491 rimI ribosomal-protei 34.4 90 0.0019 21.2 4.2 47 49-95 82-131 (146)
17 cd02169 Citrate_lyase_ligase C 34.4 70 0.0015 26.2 4.2 51 49-101 44-97 (297)
18 PF03659 Glyco_hydro_71: Glyco 34.3 65 0.0014 27.4 4.2 19 54-73 21-39 (386)
19 PF09608 Alph_Pro_TM: Putative 34.0 24 0.00053 28.2 1.4 42 27-68 68-109 (236)
20 COG3439 Uncharacterized conser 33.8 89 0.0019 23.1 4.3 55 41-101 14-68 (137)
21 KOG0870 DNA polymerase epsilon 31.8 5.4 0.00012 31.1 -2.5 21 63-83 68-88 (172)
22 TIGR00124 cit_ly_ligase [citra 31.7 74 0.0016 26.5 4.0 41 48-88 68-108 (332)
23 PF13673 Acetyltransf_10: Acet 31.5 63 0.0014 20.7 2.9 35 49-84 83-117 (117)
24 TIGR02406 ectoine_EctA L-2,4-d 31.2 1.3E+02 0.0027 21.4 4.7 73 8-89 48-128 (157)
25 TIGR03019 pepcterm_femAB FemAB 29.5 2.1E+02 0.0046 22.8 6.2 50 47-96 236-286 (330)
26 KOG2658 NADH:ubiquinone oxidor 29.1 46 0.001 29.3 2.4 52 1-63 127-195 (478)
27 PRK10809 ribosomal-protein-S5- 27.1 2.4E+02 0.0052 20.2 7.7 77 2-86 79-163 (194)
28 PRK10140 putative acetyltransf 27.0 1.5E+02 0.0033 20.0 4.3 81 8-95 59-147 (162)
29 PRK07757 acetyltransferase; Pr 26.9 1.3E+02 0.0028 20.5 4.0 36 49-86 84-119 (152)
30 TIGR01575 rimI ribosomal-prote 26.3 1.8E+02 0.0039 18.6 4.5 46 48-93 72-120 (131)
31 TIGR03448 mycothiol_MshD mycot 25.4 1.2E+02 0.0027 23.2 4.0 45 49-93 245-292 (292)
32 PRK07922 N-acetylglutamate syn 24.7 1.5E+02 0.0032 21.5 4.2 41 48-90 88-128 (169)
33 PF13302 Acetyltransf_3: Acety 24.4 2.1E+02 0.0046 18.7 7.6 77 2-84 60-141 (142)
34 PF08212 Lipocalin_2: Lipocali 24.2 1.2E+02 0.0027 21.4 3.6 24 43-66 112-135 (143)
35 PF12643 MazG-like: MazG-like 22.2 48 0.001 23.2 1.1 23 48-71 41-63 (98)
36 TIGR02186 alph_Pro_TM conserve 22.1 72 0.0016 26.3 2.2 35 31-65 100-134 (261)
37 COG3612 Uncharacterized protei 21.1 54 0.0012 25.3 1.2 14 54-67 130-143 (157)
38 PF09999 DUF2240: Uncharacteri 20.1 51 0.0011 24.8 0.9 13 54-66 125-137 (144)
39 COG3623 SgaU Putative L-xylulo 20.1 87 0.0019 26.2 2.3 21 48-68 94-122 (287)
No 1
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=100.00 E-value=2.9e-58 Score=355.48 Aligned_cols=112 Identities=62% Similarity=1.055 Sum_probs=100.9
Q ss_pred CeeecCCCCccceeEEEeeccceeccCCCccceeeeeeEEEecCCCCHHHHHHHHHHHHHhCCCcEEeeeccccChhhhh
Q 046799 1 FLVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQKDFDVFNALDVMQNESFLK 80 (114)
Q Consensus 1 yVve~~~~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~Y~~~~~~~l~~L~~dali~Ak~~gfDVFNaL~im~N~~fL~ 80 (114)
||||+++ |+||||+|||+||||||+|++|++|+|||+||++++++||++||+||||+||+.|||||||||+|+|++||+
T Consensus 78 yVve~~~-~~ITDf~SFY~Lpstvi~~~k~~~l~aAY~fY~~~~~~~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~~fL~ 156 (190)
T PF02799_consen 78 YVVEDPD-GKITDFFSFYSLPSTVIGNPKHKTLKAAYSFYYVATSTRLKELMNDALILAKNEGFDVFNALDLMDNSSFLE 156 (190)
T ss_dssp EEEEETT-SEEEEEEEEEEEEEEESSSSSSSEEEEEEEEEEEESSSHHHHHHHHHHHHHHHTTESEEEEESTTTGGGTTT
T ss_pred EEEecCC-CceeeEEEEeecceeecCCCCccceeeeeeeeeeecCCCHHHHHHHHHHHHHHcCCCEEehhhhccchhhHh
Confidence 7999987 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCccceeEEEEeccCCccCCC-CceeEEe
Q 046799 81 ELKFGPGDGKLHYYLYNYRIRQAVLA-SELGLVL 113 (114)
Q Consensus 81 ~lkF~~GdG~L~YYLyNw~~~~~i~~-~~vglvl 113 (114)
+|||++|||+|||||||||||+..+| ++|||||
T Consensus 157 ~lKFg~GdG~L~YYLyNwr~~~i~~~~~~vGlVl 190 (190)
T PF02799_consen 157 DLKFGPGDGNLNYYLYNWRCPPIMGPISKVGLVL 190 (190)
T ss_dssp TTT-EEEEEEEEEEEESEB-----GSBGGBE---
T ss_pred hCCccCCCCCeEEEEEeccCCCCCCCccccceeC
Confidence 99999999999999999999864456 9999997
No 2
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=100.00 E-value=6.6e-54 Score=357.46 Aligned_cols=112 Identities=71% Similarity=1.207 Sum_probs=109.4
Q ss_pred CeeecCCCCccceeEEEeeccceeccCCCccceeeeeeEEEecCCCCHHHHHHHHHHHHHhCCCcEEeeeccccChhhhh
Q 046799 1 FLVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQKDFDVFNALDVMQNESFLK 80 (114)
Q Consensus 1 yVve~~~~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~Y~~~~~~~l~~L~~dali~Ak~~gfDVFNaL~im~N~~fL~ 80 (114)
||||+|+ |+||||+|||+||||||+||+|++|+|||+|||+++++|+.|||+||||+||+.|||||||||+|+|++||+
T Consensus 310 yVvesp~-g~ITDF~SFy~lpsTv~~~~~~ktl~aaYlyY~v~~~t~~~~lvnDalilak~~gfDVFNAld~meN~~fl~ 388 (421)
T KOG2779|consen 310 YVVESPN-GKITDFCSFYSLPSTVMGNPKYKTLQAAYLYYNVATSTPLLQLVNDALILAKQKGFDVFNALDLMENESFLK 388 (421)
T ss_pred EEEECCC-CcccceeeEEeccccccCCCCcceeeeeeEEEeccCCccHHHHHHHHHHHHHhcCCceeehhhhhhhhhHHH
Confidence 8999987 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCccceeEEEEeccCCccCCCCceeEEeC
Q 046799 81 ELKFGPGDGKLHYYLYNYRIRQAVLASELGLVLL 114 (114)
Q Consensus 81 ~lkF~~GdG~L~YYLyNw~~~~~i~~~~vglvl~ 114 (114)
+||||+|||+||||||||||+ .++|++||+||+
T Consensus 389 ~LkFg~GdG~l~YYLYNwr~~-~~~ps~vglVL~ 421 (421)
T KOG2779|consen 389 DLKFGPGDGNLQYYLYNWRCP-AMKPSKVGLVLQ 421 (421)
T ss_pred hcCcCcCCCceeEEEEeccCC-cCChhheeEeeC
Confidence 999999999999999999997 699999999985
No 3
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=100.00 E-value=4.9e-44 Score=297.05 Aligned_cols=112 Identities=44% Similarity=0.823 Sum_probs=106.2
Q ss_pred CeeecCCCCccceeEEEeeccceeccCCCccceeeeeeEEEecCC--------------CCHHHHHHHHHHHHHhCCCcE
Q 046799 1 FLVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTK--------------TPLLQLMNDALIVAKQKDFDV 66 (114)
Q Consensus 1 yVve~~~~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~Y~~~~~--------------~~l~~L~~dali~Ak~~gfDV 66 (114)
||||+|+ |+||||+|||+||+|+|+|++++.|.+||+||+++.. ++++++++||+|+||++||||
T Consensus 313 yvVe~p~-gkItdFfsFyslp~t~i~n~kykdiq~gYLYYya~d~~~kd~~~~a~~a~~~r~~e~v~Da~ilak~~~~DV 391 (451)
T COG5092 313 YVVEEPN-GKITDFFSFYSLPFTTIENKKYKDIQGGYLYYYAGDDQFKDFDPKATKALKTRVAEMVGDAMILAKVEGCDV 391 (451)
T ss_pred EEEeCCC-CccccceEEEeccceeecCccccccceeEEEEEccCccccccChHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 7999997 7899999999999999999999999999999999764 579999999999999999999
Q ss_pred EeeeccccChhhhhhcCCCCCccceeEEEEeccCCccCC-------------CCceeEEeC
Q 046799 67 FNALDVMQNESFLKELKFGPGDGKLHYYLYNYRIRQAVL-------------ASELGLVLL 114 (114)
Q Consensus 67 FNaL~im~N~~fL~~lkF~~GdG~L~YYLyNw~~~~~i~-------------~~~vglvl~ 114 (114)
||||++|||..||.+||||+|||.|+||||||+|+ +|+ ++++|+||+
T Consensus 392 FNalt~~dN~lFL~dLkFg~GdGflnyYlyNy~~~-~Ipggl~~~~s~d~~rrs~vgfVm~ 451 (451)
T COG5092 392 FNALTMMDNSLFLADLKFGCGDGFLNYYLYNYKSE-EIPGGLNPDNSNDIKRRSKVGFVMP 451 (451)
T ss_pred hhhhhhccchhHHHhcCccCCCceeEEEEEeccCC-CCCCCCCccccccccccccceEecC
Confidence 99999999999999999999999999999999996 477 899999985
No 4
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=80.66 E-value=16 Score=25.12 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCcEEeeeccccChhhhhhcCCCC
Q 046799 49 LQLMNDALIVAKQKDFDVFNALDVMQNESFLKELKFGP 86 (114)
Q Consensus 49 ~~L~~dali~Ak~~gfDVFNaL~im~N~~fL~~lkF~~ 86 (114)
.+|++.++..|++.|+.-.-+-..-+|..|.++++|..
T Consensus 104 ~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~y~k~GF~~ 141 (150)
T PLN02706 104 KKIIEALTEHARSAGCYKVILDCSEENKAFYEKCGYVR 141 (150)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccccHHHHHHCcCEE
Confidence 47899999999999998886666678889999999964
No 5
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=75.76 E-value=4.8 Score=24.57 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=48.2
Q ss_pred CCccceeEEEeeccceeccCCCccceeeeeeE-EEecCCC---C-HHHHHHHHHHHHHhCCCcEEeeeccccCh---hhh
Q 046799 8 THEITDFCSFYTLPSSILGNPNYSTLKAAYSY-YNVSTKT---P-LLQLMNDALIVAKQKDFDVFNALDVMQNE---SFL 79 (114)
Q Consensus 8 ~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~-Y~~~~~~---~-l~~L~~dali~Ak~~gfDVFNaL~im~N~---~fL 79 (114)
+|+|-.++++...+..- .+ -+.+++. ..+..+. . =+.|++.++..|++.|+...-+.-..+|. .|.
T Consensus 4 ~~~ivg~~~~~~~~~~~----~~--~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~ 77 (83)
T PF00583_consen 4 DGQIVGFASLRPPPEPF----DH--GNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFY 77 (83)
T ss_dssp TTEEEEEEEEEEEETTT----TT--TTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHH
T ss_pred CCEEEEEEEEEECCCcc----cc--CCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHH
Confidence 46777888777766542 11 2233332 1222211 1 34689999999999999999999999999 889
Q ss_pred hhcCC
Q 046799 80 KELKF 84 (114)
Q Consensus 80 ~~lkF 84 (114)
++++|
T Consensus 78 ~k~Gf 82 (83)
T PF00583_consen 78 EKLGF 82 (83)
T ss_dssp HHTTE
T ss_pred HHcCC
Confidence 98887
No 6
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=65.97 E-value=39 Score=23.00 Aligned_cols=78 Identities=24% Similarity=0.270 Sum_probs=52.7
Q ss_pred CeeecCCCCccceeEEEeeccceeccCCCccceeeeeeEEEecC---CCCH-HHHHHHHHHHH-HhCCCcEEeeeccccC
Q 046799 1 FLVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVST---KTPL-LQLMNDALIVA-KQKDFDVFNALDVMQN 75 (114)
Q Consensus 1 yVve~~~~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~Y~~~~---~~~l-~~L~~dali~A-k~~gfDVFNaL~im~N 75 (114)
|+|.+ ++|++-.++++..+.+ .-..|.+-+.+.. ...+ ..|+.-++..| ++.|+.-..+--...|
T Consensus 53 ~~v~~-~~g~iiG~~~~~~~~~---------~~~~~~~~~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N 122 (155)
T PF13420_consen 53 FLVAE-EDGKIIGYVSLRDIDP---------YNHTAELSIYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSN 122 (155)
T ss_dssp EEEEE-CTTEEEEEEEEEESSS---------GTTEEEEEEEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-
T ss_pred EEEEE-cCCcEEEEEEEEeeec---------cCCEEEEeeEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCC
Confidence 35565 4578999988875533 2234455454532 3345 57899999999 9999999987667777
Q ss_pred h---hhhhhcCCCCCc
Q 046799 76 E---SFLKELKFGPGD 88 (114)
Q Consensus 76 ~---~fL~~lkF~~Gd 88 (114)
+ .|.++++|..-.
T Consensus 123 ~~~i~~~~~~GF~~~g 138 (155)
T PF13420_consen 123 EKAINFYKKLGFEEEG 138 (155)
T ss_dssp HHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHhCCCEEEE
Confidence 7 679999997643
No 7
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=62.39 E-value=20 Score=26.15 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCCCcEEeeeccccCh---hhhhhcCCCCCccceeEEEE
Q 046799 49 LQLMNDALIVAKQKDFDVFNALDVMQNE---SFLKELKFGPGDGKLHYYLY 96 (114)
Q Consensus 49 ~~L~~dali~Ak~~gfDVFNaL~im~N~---~fL~~lkF~~GdG~L~YYLy 96 (114)
++|++.++..|++.|+...-+-..-+|. .|.++++|.. .|.. |+||
T Consensus 145 ~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~-~~~~-~~~~ 193 (194)
T PRK10975 145 ARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANI-ESTA-YWLY 193 (194)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeE-eEEE-eeec
Confidence 4799999999999999987666666786 5899999986 3332 3665
No 8
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=48.97 E-value=27 Score=27.34 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=24.3
Q ss_pred eeEEEecCCCCHHHHHHHHHHHHHhCCCcEEee
Q 046799 37 YSYYNVSTKTPLLQLMNDALIVAKQKDFDVFNA 69 (114)
Q Consensus 37 Y~~Y~~~~~~~l~~L~~dali~Ak~~gfDVFNa 69 (114)
|+|=...+.+.=.+..+.++..||+.||||-+-
T Consensus 134 ylWlLsRtP~~s~~~~~~ml~~ak~~Gfdv~~l 166 (174)
T COG3040 134 YLWLLSRTPTLSQETLKRMLEIAKRRGFDVSKL 166 (174)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHcCCCccee
Confidence 444444444456788999999999999999654
No 9
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=47.36 E-value=80 Score=20.74 Aligned_cols=76 Identities=18% Similarity=0.138 Sum_probs=51.7
Q ss_pred eeecCCCCccceeEEEeeccceeccCCCccceeeeeeEEEecCC-----CCHHHHHHHHHHHHHhCCCcEEeeeccccCh
Q 046799 2 LVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTK-----TPLLQLMNDALIVAKQKDFDVFNALDVMQNE 76 (114)
Q Consensus 2 Vve~~~~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~Y~~~~~-----~~l~~L~~dali~Ak~~gfDVFNaL~im~N~ 76 (114)
|+++ +|+|-..+..+..+.++ . -..+++|++---+... --...||+.++..+++.|++.. +|-- .+.
T Consensus 45 ~~~~--~~~ivg~~~~~~~~~~~---~-g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~-~l~~-~~~ 116 (127)
T PF13527_consen 45 VAED--DGKIVGHVGLIPRRLSV---G-GKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFI-FLFP-SSP 116 (127)
T ss_dssp EEEE--TTEEEEEEEEEEEEEEE---T-TEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEE-EEE--SSH
T ss_pred EEEE--CCEEEEEEEEEEEEEEE---C-CEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEE-EEec-CCh
Confidence 4555 46888888887665543 2 2678888888644321 1267899999999999999954 4422 568
Q ss_pred hhhhhcCCC
Q 046799 77 SFLKELKFG 85 (114)
Q Consensus 77 ~fL~~lkF~ 85 (114)
.|-++++|.
T Consensus 117 ~~Y~~~G~~ 125 (127)
T PF13527_consen 117 PFYRRFGFE 125 (127)
T ss_dssp HHHHHTTEE
T ss_pred hhhhcCCCE
Confidence 899988875
No 10
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=44.49 E-value=60 Score=21.73 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCCcEEeeeccccCh---hhhhhcCCCCC
Q 046799 49 LQLMNDALIVAKQKDFDVFNALDVMQNE---SFLKELKFGPG 87 (114)
Q Consensus 49 ~~L~~dali~Ak~~gfDVFNaL~im~N~---~fL~~lkF~~G 87 (114)
+.||+.++-.|++.|+..-..-.-.+|. .|-++++|...
T Consensus 95 ~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~ 136 (144)
T PRK10146 95 SKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQS 136 (144)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchh
Confidence 4689999999999999876533334554 78899999765
No 11
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=43.43 E-value=17 Score=29.14 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=29.5
Q ss_pred cceeeeeeEEEecC--------CCCHHHHHHHHHHHHHhCCCcEEee
Q 046799 31 STLKAAYSYYNVST--------KTPLLQLMNDALIVAKQKDFDVFNA 69 (114)
Q Consensus 31 ~~l~aAY~~Y~~~~--------~~~l~~L~~dali~Ak~~gfDVFNa 69 (114)
-.+..||+|=+..+ =.+-.+....++.+||+.|||++-.
T Consensus 51 Cnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRi 97 (228)
T COG5014 51 CNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRI 97 (228)
T ss_pred cceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 35777777744332 2467899999999999999999853
No 12
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=40.86 E-value=76 Score=24.62 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=43.4
Q ss_pred ceeeeeeEEEecCC-C----CHHHHHHHHHHHHHhCCCcEEeeeccccCh---hhhhhcCCCCCccceeEEE
Q 046799 32 TLKAAYSYYNVSTK-T----PLLQLMNDALIVAKQKDFDVFNALDVMQNE---SFLKELKFGPGDGKLHYYL 95 (114)
Q Consensus 32 ~l~aAY~~Y~~~~~-~----~l~~L~~dali~Ak~~gfDVFNaL~im~N~---~fL~~lkF~~GdG~L~YYL 95 (114)
.-+.+|+.=-+-.+ . ==+.|+..||..+++.|+|----=+-..|. ..-+.|+|..---..+||+
T Consensus 81 ~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~~YYl 152 (165)
T KOG3139|consen 81 NTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRLFRYYL 152 (165)
T ss_pred CcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceEecceeEEEE
Confidence 34567766433111 1 135789999999999999966444445555 3468999998777788886
No 13
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=38.99 E-value=92 Score=22.72 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCcEEeeeccccCh---hhhhhcCCCCC
Q 046799 49 LQLMNDALIVAKQKDFDVFNALDVMQNE---SFLKELKFGPG 87 (114)
Q Consensus 49 ~~L~~dali~Ak~~gfDVFNaL~im~N~---~fL~~lkF~~G 87 (114)
++|++.++-.|++.|+.-..+.-.-+|+ .|.++++|..-
T Consensus 142 ~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~ 183 (191)
T TIGR02382 142 AELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIE 183 (191)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccc
Confidence 5789999999999999988777677886 68999999753
No 14
>PRK09539 tRNA-splicing endonuclease subunit beta; Reviewed
Probab=38.28 E-value=1.6e+02 Score=21.68 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=45.3
Q ss_pred ceeEEEeeccceeccCCCccceeeeeeEEEec--CCCCHHHHHHHHHHHHHhCCCcEEeeeccccChhhhhhcCCCCCcc
Q 046799 12 TDFCSFYTLPSSILGNPNYSTLKAAYSYYNVS--TKTPLLQLMNDALIVAKQKDFDVFNALDVMQNESFLKELKFGPGDG 89 (114)
Q Consensus 12 tdf~SFY~Lpstvi~~~~~~~l~aAY~~Y~~~--~~~~l~~L~~dali~Ak~~gfDVFNaL~im~N~~fL~~lkF~~GdG 89 (114)
.||.|++..|. + + .+.|+.+-+. ...++.+| .++...|+...-...=|+ .-.+|
T Consensus 55 ~kfg~~~~~~~----~-~----~s~ylV~Vl~E~~~is~~eL-~~~vr~a~svrK~lVLAV--------------VD~eg 110 (124)
T PRK09539 55 IDEISLIIKDK----E-N----KYTAMVLIVDENEKVSFKKI-LDKLHFSKSMNLELYLAI--------------VDKYG 110 (124)
T ss_pred CceeEEEEecC----C-C----CceEEEEEecCCCccCHHHH-HHHHHHHhhccceeEEEE--------------EcCCC
Confidence 58999988872 1 1 6688888775 45677777 788888876544433232 22489
Q ss_pred ceeEEEEeccC
Q 046799 90 KLHYYLYNYRI 100 (114)
Q Consensus 90 ~L~YYLyNw~~ 100 (114)
.+-||-..|-.
T Consensus 111 dVTYY~v~~i~ 121 (124)
T PRK09539 111 DVTYYTLSEIK 121 (124)
T ss_pred cEEEEEEEEee
Confidence 99999999964
No 15
>PRK03624 putative acetyltransferase; Provisional
Probab=35.36 E-value=1e+02 Score=19.95 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCCCcEEeeeccccCh---hhhhhcCCCCCccce
Q 046799 48 LLQLMNDALIVAKQKDFDVFNALDVMQNE---SFLKELKFGPGDGKL 91 (114)
Q Consensus 48 l~~L~~dali~Ak~~gfDVFNaL~im~N~---~fL~~lkF~~GdG~L 91 (114)
-++|++.++..|++.|+....+--.-+|+ .+.++++|.. .+.+
T Consensus 86 g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~-~~~~ 131 (140)
T PRK03624 86 GRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEE-QDRI 131 (140)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCcc-ccEE
Confidence 34678888888999999988766666776 5899999987 4443
No 16
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=34.42 E-value=90 Score=21.23 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCCcEEeeeccccCh---hhhhhcCCCCCccceeEEE
Q 046799 49 LQLMNDALIVAKQKDFDVFNALDVMQNE---SFLKELKFGPGDGKLHYYL 95 (114)
Q Consensus 49 ~~L~~dali~Ak~~gfDVFNaL~im~N~---~fL~~lkF~~GdG~L~YYL 95 (114)
+++++.++..|++.|+.-.-+-..-+|. .|.++++|...+....|+.
T Consensus 82 ~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~ 131 (146)
T PRK09491 82 RALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIRRNYYP 131 (146)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeeeecccc
Confidence 4678888888888888754443334554 7899999998887777753
No 17
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=34.35 E-value=70 Score=26.22 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhCCCcEEeeeccccChhhhhhcCCCCCc---cceeEEEEeccCC
Q 046799 49 LQLMNDALIVAKQKDFDVFNALDVMQNESFLKELKFGPGD---GKLHYYLYNYRIR 101 (114)
Q Consensus 49 ~~L~~dali~Ak~~gfDVFNaL~im~N~~fL~~lkF~~Gd---G~L~YYLyNw~~~ 101 (114)
++||+.++..|++.|+.-.-...--++..|-++++|..-. | .+.++.+..+
T Consensus 44 ~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek~GF~~~~~~~~--~~~~~~~gi~ 97 (297)
T cd02169 44 LKIVSELINKAYEEGIFHLFLFTKPKNAKFFRGLGFKELANASD--EAVLLENGKP 97 (297)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHHCCCEEecccCC--eeeEecCCch
Confidence 4689999999999999866555555677899999998544 3 4556666653
No 18
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=34.34 E-value=65 Score=27.39 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=14.0
Q ss_pred HHHHHHHhCCCcEEeeeccc
Q 046799 54 DALIVAKQKDFDVFNALDVM 73 (114)
Q Consensus 54 dali~Ak~~gfDVFNaL~im 73 (114)
.=+.+|++.|+|-| |||++
T Consensus 21 ~di~~A~~~GIDgF-aLNig 39 (386)
T PF03659_consen 21 ADIRLAQAAGIDGF-ALNIG 39 (386)
T ss_pred HHHHHHHHcCCCEE-EEecc
Confidence 33567778888888 78877
No 19
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=34.01 E-value=24 Score=28.23 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=34.3
Q ss_pred CCCccceeeeeeEEEecCCCCHHHHHHHHHHHHHhCCCcEEe
Q 046799 27 NPNYSTLKAAYSYYNVSTKTPLLQLMNDALIVAKQKDFDVFN 68 (114)
Q Consensus 27 ~~~~~~l~aAY~~Y~~~~~~~l~~L~~dali~Ak~~gfDVFN 68 (114)
|...-+++.|-+||-++++.||.++.......-.+.|.|-.+
T Consensus 68 N~~~~~f~~vPsfY~vassrPl~~i~~~~~~~~~~ig~~~l~ 109 (236)
T PF09608_consen 68 NTDSVEFDNVPSFYAVASSRPLDEIASPEELLRLGIGLDNLR 109 (236)
T ss_pred ecCceEEccCCchheeeecCCHHHhCCHHHHHhhCcCcchhh
Confidence 334567889999999999999999999887777788888443
No 20
>COG3439 Uncharacterized conserved protein [Function unknown]
Probab=33.77 E-value=89 Score=23.12 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=41.7
Q ss_pred EecCCCCHHHHHHHHHHHHHhCCCcEEeeeccccChhhhhhcCCCCCccceeEEEEeccCC
Q 046799 41 NVSTKTPLLQLMNDALIVAKQKDFDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYRIR 101 (114)
Q Consensus 41 ~~~~~~~l~~L~~dali~Ak~~gfDVFNaL~im~N~~fL~~lkF~~GdG~L~YYLyNw~~~ 101 (114)
.+..+.++.|.++....-.|+.||.||--+|.+++-.-=..+++-+ ||+++---|
T Consensus 14 ~~~s~~~~~E~i~~l~~~lk~~G~~V~~~id~~e~l~~~g~~~~~p------~~Il~~cnP 68 (137)
T COG3439 14 TAESKLSFDETIERLEEKLKKNGFKVFTEIDHAEALKNAGVLDIPP------YTILVFCNP 68 (137)
T ss_pred EEEecCCHHHHHHHHHHHHHhCCCeEEEEecHHHHHHhcCcCCCCC------eEEEEEcCC
Confidence 3445779999999999999999999999988876655444455554 777776543
No 21
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Probab=31.84 E-value=5.4 Score=31.10 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=18.7
Q ss_pred CCcEEeeeccccChhhhhhcC
Q 046799 63 DFDVFNALDVMQNESFLKELK 83 (114)
Q Consensus 63 gfDVFNaL~im~N~~fL~~lk 83 (114)
+=||++||+=|+++.|...||
T Consensus 68 adDVl~aL~Eiefs~f~~plk 88 (172)
T KOG0870|consen 68 ADDVLKALDEIEFSSFVNPLK 88 (172)
T ss_pred HHHHHHHHHHhchHHHhhHHH
Confidence 569999999999999988775
No 22
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=31.71 E-value=74 Score=26.51 Aligned_cols=41 Identities=15% Similarity=0.010 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEeeeccccChhhhhhcCCCCCc
Q 046799 48 LLQLMNDALIVAKQKDFDVFNALDVMQNESFLKELKFGPGD 88 (114)
Q Consensus 48 l~~L~~dali~Ak~~gfDVFNaL~im~N~~fL~~lkF~~Gd 88 (114)
-++||+.++..|++.|+...-..+--.|..|.++++|.+-.
T Consensus 68 g~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~klGF~~i~ 108 (332)
T TIGR00124 68 ALQLMTELENLAYELGRFHLFIFTKPEYAALFEYCGFKTLA 108 (332)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHHcCCEEee
Confidence 56799999999999999888777766678899999997644
No 23
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=31.53 E-value=63 Score=20.72 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCCcEEeeeccccChhhhhhcCC
Q 046799 49 LQLMNDALIVAKQKDFDVFNALDVMQNESFLKELKF 84 (114)
Q Consensus 49 ~~L~~dali~Ak~~gfDVFNaL~im~N~~fL~~lkF 84 (114)
+.|+..++..|++ |+....+=.-.....|.++++|
T Consensus 83 ~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 83 RALLDAAEKEAKD-GIRRLTVEANERARRFYRKLGF 117 (117)
T ss_dssp HHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHhCCC
Confidence 4678888888877 9988766533333367777776
No 24
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=31.21 E-value=1.3e+02 Score=21.42 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=47.4
Q ss_pred CCccceeEEEeeccceeccCCCccceeeeeeE-EEecCC---CC-HHHHHHHHHHHHHhCCCcEEeeeccccCh---hhh
Q 046799 8 THEITDFCSFYTLPSSILGNPNYSTLKAAYSY-YNVSTK---TP-LLQLMNDALIVAKQKDFDVFNALDVMQNE---SFL 79 (114)
Q Consensus 8 ~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~-Y~~~~~---~~-l~~L~~dali~Ak~~gfDVFNaL~im~N~---~fL 79 (114)
+|++-.|++.+..|.. + ..++.+ ..+... .. =++|++.++..|++.++.-..+.-.-+|. .+.
T Consensus 48 ~~~ivG~~~~~~~~~~----~-----~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly 118 (157)
T TIGR02406 48 GGEIVGFVSGYLRPDR----P-----DVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALF 118 (157)
T ss_pred CCeEEEEEEEEecCCC----C-----CeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHH
Confidence 4678888776544421 1 123333 223221 11 35789999999999999888877777887 479
Q ss_pred hhcCCCCCcc
Q 046799 80 KELKFGPGDG 89 (114)
Q Consensus 80 ~~lkF~~GdG 89 (114)
++++|..+..
T Consensus 119 ~k~G~~~~~~ 128 (157)
T TIGR02406 119 KALARRRGVH 128 (157)
T ss_pred HHhCcccCCC
Confidence 9999877543
No 25
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=29.51 E-value=2.1e+02 Score=22.80 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHhCCCcEEeeeccccC-hhhhhhcCCCCCccceeEEEE
Q 046799 47 PLLQLMNDALIVAKQKDFDVFNALDVMQN-ESFLKELKFGPGDGKLHYYLY 96 (114)
Q Consensus 47 ~l~~L~~dali~Ak~~gfDVFNaL~im~N-~~fL~~lkF~~GdG~L~YYLy 96 (114)
+-.-|+..++..|+++|+.+|+.--...+ ..+--+.+||.-.-.|+|+-+
T Consensus 236 ~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l~~~~~ 286 (330)
T TIGR03019 236 ANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGFEPQPLHYEYL 286 (330)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCCeeccceEEEE
Confidence 45567888999999999999998655443 243445566666667777544
No 26
>KOG2658 consensus NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit [Energy production and conversion]
Probab=29.14 E-value=46 Score=29.32 Aligned_cols=52 Identities=27% Similarity=0.338 Sum_probs=32.1
Q ss_pred CeeecCCCCccceeEEEeeccceeccCCCccce------------eeeeeE-----EEecCCCCHHHHHHHHHHHHHhCC
Q 046799 1 FLVASPETHEITDFCSFYTLPSSILGNPNYSTL------------KAAYSY-----YNVSTKTPLLQLMNDALIVAKQKD 63 (114)
Q Consensus 1 yVve~~~~~~itdf~SFY~Lpstvi~~~~~~~l------------~aAY~~-----Y~~~~~~~l~~L~~dali~Ak~~g 63 (114)
|||.+.+.|++-.+ -.--|++|+.|+-| .|||.| |+-+ -.|+.|++-|-..|
T Consensus 127 ~lvVNadEgepGtc-----KDReilRHdPHKliEG~liagram~a~aayiyIR~efynEa------~nlq~ai~eAY~ag 195 (478)
T KOG2658|consen 127 YLVVNADEGEPGTC-----KDREILRHDPHKLIEGCLIAGRAMGASAAYIYIRGEFYNEA------CNLQKAIIEAYAAG 195 (478)
T ss_pred EEEEECCCCCCCcc-----ccHHHhccCcHHhhhhhhhhhhhcccceeEEEehhhhHHHH------HHHHHHHHHHHHhc
Confidence 45655544443321 12347788888766 578888 4433 36888998886653
No 27
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=27.11 E-value=2.4e+02 Score=20.19 Aligned_cols=77 Identities=18% Similarity=0.312 Sum_probs=52.9
Q ss_pred eeecCCCCccceeEEEeeccceeccCCCccceeeeeeEEEecCCCC----HHHHHHHHHHHHHh-CCCcEEeeeccccCh
Q 046799 2 LVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTP----LLQLMNDALIVAKQ-KDFDVFNALDVMQNE 76 (114)
Q Consensus 2 Vve~~~~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~Y~~~~~~~----l~~L~~dali~Ak~-~gfDVFNaL~im~N~ 76 (114)
+++..+++++-..+++..++- +. -..|.+-|.++.+.. -+++++.++..|.+ .|++-.=+.-.-+|.
T Consensus 79 ~i~~~~~~~~iG~i~l~~~~~-----~~---~~~~eig~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~ 150 (194)
T PRK10809 79 ALLDPDEKEIIGVANFSNVVR-----GS---FHACYLGYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNK 150 (194)
T ss_pred EEEECCCCeEEEEEEEEeecC-----CC---eeeEEEEEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCH
Confidence 444444567888888875421 11 134677777754221 56788888888876 699988777777886
Q ss_pred ---hhhhhcCCCC
Q 046799 77 ---SFLKELKFGP 86 (114)
Q Consensus 77 ---~fL~~lkF~~ 86 (114)
.++++++|..
T Consensus 151 ~S~~l~ek~Gf~~ 163 (194)
T PRK10809 151 RSGDLLARLGFEK 163 (194)
T ss_pred HHHHHHHHCCCcE
Confidence 6799999986
No 28
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=26.97 E-value=1.5e+02 Score=20.01 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=48.4
Q ss_pred CCccceeEEEeeccceeccCCCccceeeeeeEEEecCCC----CHHHHHHHHHHHHHh-CCCcEEeeeccccCh---hhh
Q 046799 8 THEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKT----PLLQLMNDALIVAKQ-KDFDVFNALDVMQNE---SFL 79 (114)
Q Consensus 8 ~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~Y~~~~~~----~l~~L~~dali~Ak~-~gfDVFNaL~im~N~---~fL 79 (114)
+|++..++++...+. |....+ +... +.+.... ==+++++.++-.|++ .|..-..+.-.-+|. .|.
T Consensus 59 ~~~~vG~~~~~~~~~-----~~~~~~-~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y 131 (162)
T PRK10140 59 DGDVVGHLTIDVQQR-----PRRSHV-ADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVY 131 (162)
T ss_pred CCEEEEEEEEecccc-----cccceE-EEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHH
Confidence 467888888875432 222211 1122 3443211 135688888888888 688777665556676 489
Q ss_pred hhcCCCCCccceeEEE
Q 046799 80 KELKFGPGDGKLHYYL 95 (114)
Q Consensus 80 ~~lkF~~GdG~L~YYL 95 (114)
++++|....=.-.++.
T Consensus 132 ~k~GF~~~g~~~~~~~ 147 (162)
T PRK10140 132 KKYGFEIEGTGKKYAL 147 (162)
T ss_pred HHCCCEEEeeccccee
Confidence 9999997443344554
No 29
>PRK07757 acetyltransferase; Provisional
Probab=26.88 E-value=1.3e+02 Score=20.54 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCcEEeeeccccChhhhhhcCCCC
Q 046799 49 LQLMNDALIVAKQKDFDVFNALDVMQNESFLKELKFGP 86 (114)
Q Consensus 49 ~~L~~dali~Ak~~gfDVFNaL~im~N~~fL~~lkF~~ 86 (114)
++|++.++..|++.|+...=+ .-.+..|.++++|.+
T Consensus 84 ~~Ll~~l~~~a~~~g~~~i~~--~~~~~~~Y~k~GF~~ 119 (152)
T PRK07757 84 RMLVEACLEEARELGVKRVFA--LTYQPEFFEKLGFRE 119 (152)
T ss_pred HHHHHHHHHHHHhCCCCeEEE--EeCcHHHHHHCCCEE
Confidence 478888888999988876522 235678999999976
No 30
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=26.28 E-value=1.8e+02 Score=18.55 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEeeeccccCh---hhhhhcCCCCCccceeE
Q 046799 48 LLQLMNDALIVAKQKDFDVFNALDVMQNE---SFLKELKFGPGDGKLHY 93 (114)
Q Consensus 48 l~~L~~dali~Ak~~gfDVFNaL~im~N~---~fL~~lkF~~GdG~L~Y 93 (114)
=++|++.++..|++.|+.-..+--.-.|+ .|+++++|.+-.=.-+|
T Consensus 72 g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~ 120 (131)
T TIGR01575 72 GRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNY 120 (131)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCcccccccc
Confidence 35788888889999887766443334454 68999999876443343
No 31
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=25.36 E-value=1.2e+02 Score=23.15 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCCcEEeeeccccCh---hhhhhcCCCCCccceeE
Q 046799 49 LQLMNDALIVAKQKDFDVFNALDVMQNE---SFLKELKFGPGDGKLHY 93 (114)
Q Consensus 49 ~~L~~dali~Ak~~gfDVFNaL~im~N~---~fL~~lkF~~GdG~L~Y 93 (114)
+.|+..++..|++.|+...-...--+|. .|.++++|.+-...+.|
T Consensus 245 ~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~~~~~ 292 (292)
T TIGR03448 245 DALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTVAEVDVAY 292 (292)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEEccccccC
Confidence 4678888889999998866544445564 68899999876665544
No 32
>PRK07922 N-acetylglutamate synthase; Validated
Probab=24.75 E-value=1.5e+02 Score=21.46 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEeeeccccChhhhhhcCCCCCccc
Q 046799 48 LLQLMNDALIVAKQKDFDVFNALDVMQNESFLKELKFGPGDGK 90 (114)
Q Consensus 48 l~~L~~dali~Ak~~gfDVFNaL~im~N~~fL~~lkF~~GdG~ 90 (114)
=++||+.++..|++.|+.-.-+.. .+..|-++++|..-.|.
T Consensus 88 G~~Ll~~~~~~a~~~g~~~l~~~~--~~~~fY~k~GF~~~~~~ 128 (169)
T PRK07922 88 GHAIVERLLDVARELGLSRVFVLT--FEVEFFARHGFVEIDGT 128 (169)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEe--ccHHHHHHCCCEECccc
Confidence 357899999999999998765443 24789999999775443
No 33
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=24.41 E-value=2.1e+02 Score=18.71 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=47.0
Q ss_pred eeecCCCCccceeEEEeeccceeccCCCccceeeeeeEEEecCCCC-HHHHHHHHHHHH-HhCCCcEEeeeccccCh---
Q 046799 2 LVASPETHEITDFCSFYTLPSSILGNPNYSTLKAAYSYYNVSTKTP-LLQLMNDALIVA-KQKDFDVFNALDVMQNE--- 76 (114)
Q Consensus 2 Vve~~~~~~itdf~SFY~Lpstvi~~~~~~~l~aAY~~Y~~~~~~~-l~~L~~dali~A-k~~gfDVFNaL~im~N~--- 76 (114)
+|+..+++++-.+++++.... .+.....+|....-.-... -++++.-++..+ ++.|+.-+-|=-.-+|.
T Consensus 60 ~i~~~~~~~~iG~i~~~~~~~------~~~~~eig~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~ 133 (142)
T PF13302_consen 60 AIEDKDDGEIIGFIGLYNIDK------NNNWAEIGYWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASR 133 (142)
T ss_dssp EEEETTTTEEEEEEEEEEEET------TTTEEEEEEEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHH
T ss_pred EEEeccCCceEEEeeeeeccc------CCCccccccchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHH
Confidence 455545567888888855432 2334444443321111112 457788888888 67999988777777787
Q ss_pred hhhhhcCC
Q 046799 77 SFLKELKF 84 (114)
Q Consensus 77 ~fL~~lkF 84 (114)
..+++++|
T Consensus 134 ~~~~k~GF 141 (142)
T PF13302_consen 134 RLLEKLGF 141 (142)
T ss_dssp HHHHHTT-
T ss_pred HHHHHcCC
Confidence 56888877
No 34
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=24.18 E-value=1.2e+02 Score=21.37 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=16.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcE
Q 046799 43 STKTPLLQLMNDALIVAKQKDFDV 66 (114)
Q Consensus 43 ~~~~~l~~L~~dali~Ak~~gfDV 66 (114)
.+...=.+.+++++..|++.|||+
T Consensus 112 R~p~~~~~~~~~~~~~~~~~G~d~ 135 (143)
T PF08212_consen 112 RTPQLSEETYAEILDRAKQQGYDV 135 (143)
T ss_dssp SSSS--HHHHHHHHHHHHHTT--G
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCH
Confidence 344445678999999999999996
No 35
>PF12643 MazG-like: MazG-like family
Probab=22.16 E-value=48 Score=23.19 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEeeec
Q 046799 48 LLQLMNDALIVAKQKDFDVFNALD 71 (114)
Q Consensus 48 l~~L~~dali~Ak~~gfDVFNaL~ 71 (114)
|.+++--+..+|++.|+| |..||
T Consensus 41 LAdvii~~ylLa~rLGid-~~~lD 63 (98)
T PF12643_consen 41 LADVIIYCYLLADRLGID-FRELD 63 (98)
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHH
Confidence 444555556788999999 55553
No 36
>TIGR02186 alph_Pro_TM conserved hypothetical protein. This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.
Probab=22.09 E-value=72 Score=26.25 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=31.1
Q ss_pred cceeeeeeEEEecCCCCHHHHHHHHHHHHHhCCCc
Q 046799 31 STLKAAYSYYNVSTKTPLLQLMNDALIVAKQKDFD 65 (114)
Q Consensus 31 ~~l~aAY~~Y~~~~~~~l~~L~~dali~Ak~~gfD 65 (114)
-+++.|-+||-++++.|+.++.......-.+.|.|
T Consensus 100 v~f~~vPsfYaVaSsrPl~~I~~~~~~~r~~igl~ 134 (261)
T TIGR02186 100 RTFLQVPESYSLASTRNIDDIASPDTARRMGIGVD 134 (261)
T ss_pred eEEcCCCcceeeeccCCHHHhCCHHHHHHhccCCc
Confidence 47889999999999999999998888877888887
No 37
>COG3612 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.10 E-value=54 Score=25.25 Aligned_cols=14 Identities=50% Similarity=0.563 Sum_probs=12.3
Q ss_pred HHHHHHHhCCCcEE
Q 046799 54 DALIVAKQKDFDVF 67 (114)
Q Consensus 54 dali~Ak~~gfDVF 67 (114)
-||+.||+.|+|+=
T Consensus 130 aaLivake~Gidis 143 (157)
T COG3612 130 AALIVAKEFGIDIS 143 (157)
T ss_pred HHHHHHHHhCCCch
Confidence 57999999999984
No 38
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=20.13 E-value=51 Score=24.76 Aligned_cols=13 Identities=54% Similarity=0.682 Sum_probs=11.1
Q ss_pred HHHHHHHhCCCcE
Q 046799 54 DALIVAKQKDFDV 66 (114)
Q Consensus 54 dali~Ak~~gfDV 66 (114)
-|+++||+.|+||
T Consensus 125 aall~ake~Gvdv 137 (144)
T PF09999_consen 125 AALLYAKEKGVDV 137 (144)
T ss_pred HHHHHHHHhCCCH
Confidence 4788999999997
No 39
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=20.06 E-value=87 Score=26.20 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhC--------CCcEEe
Q 046799 48 LLQLMNDALIVAKQK--------DFDVFN 68 (114)
Q Consensus 48 l~~L~~dali~Ak~~--------gfDVFN 68 (114)
=.++|+.|+.+|++. |+||+-
T Consensus 94 aleiM~KaI~LA~dLGIRtIQLAGYDVYY 122 (287)
T COG3623 94 ALEIMEKAIQLAQDLGIRTIQLAGYDVYY 122 (287)
T ss_pred HHHHHHHHHHHHHHhCceeEeeccceeee
Confidence 347899999999986 678873
Done!