BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046801
         (272 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WFI|A Chain A, Nuclear Move Domain Of Nuclear Distribution Gene C Homolog
          Length = 131

 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 84/117 (71%), Gaps = 2/117 (1%)

Query: 154 NYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDD 211
           NY WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQPP++DGEL+  VK ++
Sbjct: 9   NYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEE 68

Query: 212 CYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTV 268
             W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS V
Sbjct: 69  SSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMV 125


>pdb|3QOR|A Chain A, Crystal Structure Of Human Nuclear Migration Protein Nudc
 pdb|3QOR|B Chain B, Crystal Structure Of Human Nuclear Migration Protein Nudc
 pdb|3QOR|D Chain D, Crystal Structure Of Human Nuclear Migration Protein Nudc
 pdb|3QOR|E Chain E, Crystal Structure Of Human Nuclear Migration Protein Nudc
          Length = 121

 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 2/114 (1%)

Query: 144 PNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDG 201
           PN GNG DL NY WTQ L E+ ++VP  V    K + ++ +I++ HL+VGLKGQP IIDG
Sbjct: 8   PNLGNGADLPNYRWTQTLSELDLAVPFXVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDG 67

Query: 202 ELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENS 255
           EL+  VK ++  W I D   V++ L K N+MEWW  L+   PEI+T+K+ PENS
Sbjct: 68  ELYNEVKVEESSWLIADGAVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENS 121


>pdb|3QOR|C Chain C, Crystal Structure Of Human Nuclear Migration Protein Nudc
          Length = 121

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 2/114 (1%)

Query: 144 PNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDG 201
           PN GNG DL NY WTQ L E+ ++VP  V    K + ++ +I++ HL+VGLKGQP IIDG
Sbjct: 8   PNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDG 67

Query: 202 ELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENS 255
           EL+  VK ++  W I D   V++ L K N+MEWW  L+   PEI+T+K+ PENS
Sbjct: 68  ELYNEVKVEESSWLIADGAVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENS 121


>pdb|2CR0|A Chain A, Solution Structure Of Nuclear Move Domain Of Nuclear
           Distribution Gene C
          Length = 121

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 74/107 (69%), Gaps = 2/107 (1%)

Query: 144 PNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDG 201
           PN GNG DL NY WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQPP++DG
Sbjct: 9   PNLGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDG 68

Query: 202 ELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQ 248
           EL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+
Sbjct: 69  ELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTK 115


>pdb|2O30|A Chain A, Nuclear Movement Protein From E. Cuniculi Gb-M1
 pdb|2O30|B Chain B, Nuclear Movement Protein From E. Cuniculi Gb-M1
          Length = 131

 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 155 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPI-IDGELHMAVKPDDCY 213
           Y+W Q L E+ +  PV     S  +  +I+    K+ +K Q  I IDGEL   V     +
Sbjct: 7   YTWDQELNEINIQFPVTGDADSSAI--KIRXVGKKICVKNQGEIVIDGELLHEVDVSSLW 64

Query: 214 WSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKV-EPENSKLSDLDPETRSTVEKMM 272
           W I +   V + +TK+   EWW  L+ G   +D QK+ E +++ +S LD E R  VEKMM
Sbjct: 65  WVI-NGDVVDVNVTKKRN-EWWDSLLVGSESVDVQKLAENKHADMSMLDAEAREVVEKMM 122


>pdb|2RH0|A Chain A, Crystal Structure Of Nudc Domain-containing Protein 2
           (13542905) From Mus Musculus At 1.95 A Resolution
 pdb|2RH0|B Chain B, Crystal Structure Of Nudc Domain-containing Protein 2
           (13542905) From Mus Musculus At 1.95 A Resolution
 pdb|2RH0|C Chain C, Crystal Structure Of Nudc Domain-containing Protein 2
           (13542905) From Mus Musculus At 1.95 A Resolution
 pdb|2RH0|D Chain D, Crystal Structure Of Nudc Domain-containing Protein 2
           (13542905) From Mus Musculus At 1.95 A Resolution
          Length = 157

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 157 WTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSI 216
           W Q L+EV + V VP GT+++ + C ++  H+ + + G+  I+ G+L  +   D+  W++
Sbjct: 18  WYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGR-EILKGKLFDSTIADEGTWTL 76

Query: 217 EDQKTVSILLTK 228
           ED+K V I+LTK
Sbjct: 77  EDRKXVRIVLTK 88


>pdb|1WGV|A Chain A, Solution Structure Of The Cs Domain Of Human Kiaa1068
           Protein
          Length = 124

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 142 RAPNKGNGLDLENYSWTQILQEVTVSVPVPAG-TKSRFVLCEIKKNHLKVGL---KGQPP 197
           + P+  NG   ENY+W+Q   ++ V VPVP    K + V   +  + ++V +    G+  
Sbjct: 9   KNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERV 68

Query: 198 IIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEID 246
           +++G+L   +  +   WS+E  K V + L+K  +  WW  +++G   ID
Sbjct: 69  LMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEY-WWNAILEGEEPID 116


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.129    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,083,590
Number of Sequences: 62578
Number of extensions: 264164
Number of successful extensions: 431
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 8
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)