BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046801
(272 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LV09|BOB1_ARATH Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1
Length = 304
Score = 267 bits (683), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 145/244 (59%), Positives = 178/244 (72%), Gaps = 8/244 (3%)
Query: 37 FSATLDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQS- 95
F ATL +NPLGFLEK F+F+ ++SDFL K +AE +IV A+RAAKEK +K+ +
Sbjct: 21 FRATLSSANPLGFLEKVFDFLGEQSDFLKKPSAEDEIVVAVRAAKEKLKKAEKKKAEKES 80
Query: 96 --PHQEEVKAKKMKEEKKEEEKFEDLPTMKVQKAPPPEPQLDANGNPAR-----APNKGN 148
P +++ + + +K +K+ EK PT+ A P E + + PNKGN
Sbjct: 81 VKPVEKKAEKEIVKLVEKKVEKESVKPTIAASSAEPIEVEKPKEEEEKKESGPIVPNKGN 140
Query: 149 GLDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVK 208
G DLENYSW Q LQEVTV++PVP GTK+R V+CEIKKN LKVGLKGQ PI+DGEL+ +VK
Sbjct: 141 GTDLENYSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVK 200
Query: 209 PDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTV 268
PDDCYW+IEDQK +SILLTK +QMEWWKC +KG PEIDTQKVEPE SKL DLDPETRSTV
Sbjct: 201 PDDCYWNIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTV 260
Query: 269 EKMM 272
EKMM
Sbjct: 261 EKMM 264
>sp|Q9STN7|BOB2_ARATH Protein BOBBER 2 OS=Arabidopsis thaliana GN=BOB2 PE=2 SV=1
Length = 293
Score = 255 bits (652), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 133/241 (55%), Positives = 172/241 (71%), Gaps = 9/241 (3%)
Query: 37 FSATLDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSP 96
F+A+ DPSNP+ FLEK + + KES+FL KD AEK+IVAA+ AAK++ ++ + +
Sbjct: 17 FTASFDPSNPIAFLEKVLDVIGKESNFLKKDTAEKEIVAAVMAAKQRL----REAEKKKL 72
Query: 97 HQEEVKAKKMKEEKKEEEKFEDLPTMKVQKAPPPEPQLDANGNPAR-----APNKGNGLD 151
+E VK+ ++++ KK+ K +L K + +P + PNKGNGLD
Sbjct: 73 EKESVKSMEVEKPKKDSLKPTELEKPKEESLMATDPMEIEKPKEEKESGPIVPNKGNGLD 132
Query: 152 LENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDD 211
E YSW Q LQEVT+++P+P GTKSR V CEIKKN LKVGLKGQ I+DGE +VKPDD
Sbjct: 133 FEKYSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDD 192
Query: 212 CYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKM 271
C+W+IEDQK +S+LLTKQ+QMEWWK +KG PEIDTQKVEPE SKL DLDPETR++VEKM
Sbjct: 193 CFWNIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKM 252
Query: 272 M 272
M
Sbjct: 253 M 253
>sp|O35685|NUDC_MOUSE Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1
Length = 332
Score = 158 bits (399), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 95/131 (72%), Gaps = 2/131 (1%)
Query: 144 PNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDG 201
PN GNG DL NY WTQ L E+ ++VP V K + V+ +I++ HL+VGLKGQPP++DG
Sbjct: 162 PNLGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDG 221
Query: 202 ELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLD 261
EL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD
Sbjct: 222 ELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLD 281
Query: 262 PETRSTVEKMM 272
ETRS VEKMM
Sbjct: 282 SETRSMVEKMM 292
>sp|Q63525|NUDC_RAT Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1
SV=1
Length = 332
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 94/131 (71%), Gaps = 2/131 (1%)
Query: 144 PNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDG 201
PN GNG DL NY WTQ L E+ ++VP V K + V+ +I++ HL+VGLKGQ P+IDG
Sbjct: 162 PNLGNGADLPNYRWTQTLSELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQAPVIDG 221
Query: 202 ELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLD 261
EL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD
Sbjct: 222 ELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLD 281
Query: 262 PETRSTVEKMM 272
ETRS VEKMM
Sbjct: 282 SETRSMVEKMM 292
>sp|Q5ZIN1|NUDC_CHICK Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1
Length = 341
Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/140 (53%), Positives = 95/140 (67%), Gaps = 2/140 (1%)
Query: 135 DANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGL 192
D N PN GNG DL NY WTQ L E+ +++P V K + V+ +I++ L+VGL
Sbjct: 162 DENDKGKLKPNAGNGADLPNYRWTQTLSELDLAIPFKVTFRLKGKDVVVDIQRRRLRVGL 221
Query: 193 KGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 252
KG PP+IDGEL VK ++ W IED KTV++ L K N+MEWW L+ PEI+T+K+ P
Sbjct: 222 KGHPPVIDGELFNEVKVEESSWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINP 281
Query: 253 ENSKLSDLDPETRSTVEKMM 272
ENSKLSDLD ETRS VEKMM
Sbjct: 282 ENSKLSDLDSETRSMVEKMM 301
>sp|Q9Y266|NUDC_HUMAN Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1
Length = 331
Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 94/131 (71%), Gaps = 2/131 (1%)
Query: 144 PNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDG 201
PN GNG DL NY WTQ L E+ ++VP V K + ++ +I++ HL+VGLKGQP IIDG
Sbjct: 161 PNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDG 220
Query: 202 ELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLD 261
EL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD
Sbjct: 221 ELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLD 280
Query: 262 PETRSTVEKMM 272
ETRS VEKMM
Sbjct: 281 SETRSMVEKMM 291
>sp|Q17QG2|NUDC_BOVIN Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1
Length = 332
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 94/131 (71%), Gaps = 2/131 (1%)
Query: 144 PNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDG 201
PN GNG DL +Y WTQ L E+ ++VP V K + V+ +I++ HL+VGLKGQP I+DG
Sbjct: 162 PNLGNGADLPSYRWTQTLSELDLAVPFCVNFRLKGKDVVVDIQRRHLRVGLKGQPAIVDG 221
Query: 202 ELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLD 261
EL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD
Sbjct: 222 ELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLD 281
Query: 262 PETRSTVEKMM 272
ETRS VEKMM
Sbjct: 282 SETRSMVEKMM 292
>sp|O60166|NUDC_SCHPO Nuclear movement protein nudc OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=nudc PE=3 SV=1
Length = 166
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
Query: 155 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLK--GQPPIIDGELHMAVKPDDC 212
Y W Q + +V + + VP GT+++ + ++ + LK+ + + ++ G L + D+
Sbjct: 11 YEWDQTIADVDIVIHVPKGTRAKSLQVDMSNHDLKIQINVPERKVLLSGPLEKQINLDES 70
Query: 213 YWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMM 272
W++E+Q+ + I L K N+MEWW C+IKG P ID +EPENSKLSDLD ETR+TVEKMM
Sbjct: 71 TWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEKMM 130
>sp|P17624|NUDC_EMENI Nuclear movement protein nudC OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nudC
PE=3 SV=1
Length = 198
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 155 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQ--PPIIDGELHMAVKPDDC 212
Y WTQ +++V V++PV A K R + +KK+ +KV +KG+ IDG+ +KP +
Sbjct: 34 YKWTQTIRDVDVTIPVSANLKGRDLDVVLKKDSIKVKVKGENGEVFIDGQFPHPIKPSES 93
Query: 213 YWSIEDQ-----KTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRST 267
W++E K VSI L K NQMEWW ++ P+ID K+ PENS LSDLD ETR+
Sbjct: 94 SWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETRAM 153
Query: 268 VEKMM 272
VEKMM
Sbjct: 154 VEKMM 158
>sp|Q54M64|NUDC_DICDI Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc
PE=3 SV=1
Length = 171
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
Query: 153 ENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKV-GLKGQPPIIDGELHMAVKPDD 211
+ Y+W+Q L + T+S+ + KS+ + +I +HL V L IIDG+L+ VK D
Sbjct: 11 DRYTWSQTLNDCTLSIKLENPVKSKDLFIKIDNDHLTVKNLITNDTIIDGKLYKNVKKSD 70
Query: 212 CYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKM 271
C W++E K + I L K EWW C+I+G EID +++P+NS LSD D ETR+ VEKM
Sbjct: 71 CNWTLESGKNLEIELFKLKGQEWWSCIIQGESEIDVTQIKPQNSSLSDFDGETRAMVEKM 130
Query: 272 M 272
+
Sbjct: 131 L 131
>sp|Q5RB75|NUDC3_PONAB NudC domain-containing protein 3 OS=Pongo abelii GN=NUDCD3 PE=2
SV=1
Length = 361
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 123 KVQKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPAG-TKSRFVLC 181
+V + PP P++ + P+ NG ENY+W+Q ++ V VPVP K + V
Sbjct: 160 EVPREPPVLPRIQEQFQ--KNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSV 217
Query: 182 EIKKNHLKVGL---KGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCL 238
+ + ++V + G+ +++G+L + + WS+E K V + L+K + WW +
Sbjct: 218 ALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEY-WWNAI 276
Query: 239 IKGGPEIDTQKVEPENSKLSDLDPETRSTVEKM 271
++G ID K+ E S ++ +D E ++ ++++
Sbjct: 277 LEGEEPIDIDKINKERS-MATVDEEEQAVLDRL 308
>sp|Q8IVD9|NUDC3_HUMAN NudC domain-containing protein 3 OS=Homo sapiens GN=NUDCD3 PE=1
SV=3
Length = 361
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 123 KVQKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPAG-TKSRFVLC 181
+V + PP P++ + P+ NG ENY+W+Q ++ V VPVP K + V
Sbjct: 160 EVPREPPILPRIQEQFQ--KNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSV 217
Query: 182 EIKKNHLKVGL---KGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCL 238
+ + ++V + G+ +++G+L + + WS+E K V + L+K + WW +
Sbjct: 218 ALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEY-WWNAI 276
Query: 239 IKGGPEIDTQKVEPENSKLSDLDPETRSTVEKM 271
++G ID K+ E S ++ +D E ++ ++++
Sbjct: 277 LEGEEPIDIDKINKERS-MATVDEEEQAVLDRL 308
>sp|Q8R1N4|NUDC3_MOUSE NudC domain-containing protein 3 OS=Mus musculus GN=Nudcd3 PE=2
SV=3
Length = 363
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 144 PNKGNGLDLENYSWTQILQEVTVSVPVPAGT-KSRFVLCEIKKNHLKVGL---KGQPPII 199
P+ NG ENY W+Q ++ V VPVP K + V + ++V + G+ ++
Sbjct: 181 PDSYNGAIRENYIWSQDYTDLEVRVPVPKHVMKGKQVSVALSSGTIRVAMVEENGERVLM 240
Query: 200 DGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSD 259
+G+L + + WS+E + V + L+K + WW +++G ID K+ E S ++
Sbjct: 241 EGKLTHKINTESSLWSLEPGRCVLVNLSKVGEY-WWSAILEGEEPIDIDKINKERS-MAT 298
Query: 260 LDPETRSTVEKM 271
+D E ++ ++++
Sbjct: 299 VDEEEQAVLDRL 310
>sp|Q5M823|NUDC2_RAT NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2
PE=2 SV=1
Length = 157
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 157 WTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSI 216
W Q L+EV + V VP GT+++ + C ++ H+ + + G+ I+ G+L + D+ W++
Sbjct: 21 WYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGR-EILKGKLFDSTIADEGTWTL 79
Query: 217 EDQKTVSILLTK 228
ED+K V I+LTK
Sbjct: 80 EDRKMVRIVLTK 91
>sp|Q9CQ48|NUDC2_MOUSE NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1
SV=1
Length = 157
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 157 WTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSI 216
W Q L+EV + V VP GT+++ + C ++ H+ + + G+ I+ G+L + D+ W++
Sbjct: 21 WYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGR-EILKGKLFDSTIADEGTWTL 79
Query: 217 EDQKTVSILLTK 228
ED+K V I+LTK
Sbjct: 80 EDRKMVRIVLTK 91
>sp|Q8WVJ2|NUDC2_HUMAN NudC domain-containing protein 2 OS=Homo sapiens GN=NUDCD2 PE=1
SV=1
Length = 157
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 157 WTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSI 216
W Q L+EV + V VP GT+++ + C ++ H+ + + G+ I+ G+L + D+ W++
Sbjct: 21 WYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGR-EILKGKLFDSTIADEGTWTL 79
Query: 217 EDQKTVSILLTK 228
ED+K V I+LTK
Sbjct: 80 EDRKMVRIVLTK 91
>sp|Q503C8|NUDC1_DANRE NudC domain-containing protein 1 OS=Danio rerio GN=nudcd1 PE=2 SV=1
Length = 585
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%)
Query: 155 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYW 214
Y W Q ++VT+ V +P GT + ++ + L+V + P++DG+L V P+ W
Sbjct: 281 YFWQQTEEDVTLCVRLPEGTTKDDIRFKLTVDCLRVRVGDYAPLLDGQLFAPVDPEASTW 340
Query: 215 SIEDQKTVSILLTKQNQMEWWKCLIKG 241
++ D K++ + L K+++ W ++ G
Sbjct: 341 TMNDDKSLEVSLQKRSEGPLWSEVVLG 367
>sp|Q28IB1|NUDC1_XENTR NudC domain-containing protein 1 OS=Xenopus tropicalis GN=nudcd1
PE=2 SV=1
Length = 586
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%)
Query: 155 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYW 214
Y+W Q ++VT++ +P G + + + + LK Q + G+L++ + + W
Sbjct: 280 YNWHQTGEDVTLTFQLPEGMTKEDLTIKFLPGEIDISLKDQGTFLKGQLYLDIDCESSAW 339
Query: 215 SIEDQKTVSILLTKQNQMEWWKCLIKG 241
I++ ++V + LTK+ W L+ G
Sbjct: 340 IIKEGRSVEVTLTKREPGSTWAELVIG 366
>sp|Q96RS6|NUDC1_HUMAN NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1
SV=2
Length = 583
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 155 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYW 214
Y W Q ++TV++ +P + + + +H+ + LK ++G+L+ ++ + W
Sbjct: 278 YYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQ-FLEGKLYSSIDHESSTW 336
Query: 215 SIEDQKTVSILLTKQNQMEWWKCLIKG 241
I++ ++ I L K+N+ W L+ G
Sbjct: 337 IIKESNSLEISLIKKNEGLTWPELVIG 363
>sp|Q7T0S2|NUDC1_XENLA NudC domain-containing protein 1 OS=Xenopus laevis GN=nudcd1 PE=2
SV=1
Length = 586
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%)
Query: 155 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYW 214
Y+W Q +EVT++ +P G + + + + +K Q + G+L+ V + W
Sbjct: 280 YNWQQTGEEVTLTFLLPEGKTKEDLNIKFLPGEIDISIKDQGTFLKGQLYSDVDCESSAW 339
Query: 215 SIEDQKTVSILLTKQ 229
+++ + V + LTK+
Sbjct: 340 IMKEGRGVEVTLTKR 354
>sp|Q6PIP5|NUDC1_MOUSE NudC domain-containing protein 1 OS=Mus musculus GN=Nudcd1 PE=2
SV=2
Length = 582
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 155 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYW 214
Y W Q ++TV+V +P + + + +++ + LK +++G+L+ ++ + W
Sbjct: 277 YYWQQSEDDLTVTVRLPESSTKEDIQIQFLPDNINIKLK-DIQVLEGKLYSSIDHEGSTW 335
Query: 215 SIEDQKTVSILLTKQNQMEWWKCLIKG 241
+I++ ++ I L K+N+ W L+ G
Sbjct: 336 TIKENDSLEISLIKKNEGLMWPELVVG 362
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.125 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,007,194
Number of Sequences: 539616
Number of extensions: 4877755
Number of successful extensions: 37482
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 644
Number of HSP's that attempted gapping in prelim test: 31890
Number of HSP's gapped (non-prelim): 4109
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)