RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 046801
(272 letters)
>gnl|CDD|107224 cd06467, p23_NUDC_like, p23_like domain of NUD (nuclear
distribution) C and similar proteins. Aspergillus
nidulas (An) NUDC is needed for nuclear movement. AnNUDC
is localized at the hyphal cortex, and binds NUDF at
spindle pole bodies (SPBs) and in the cytoplasm at
different stages in the cell cycle. At the SPBs it is
part of the dynein molecular motor/NUDF complex that
regulates microtubule dynamics. Mammalian(m) NUDC
associates both with the dynein complex and also with an
anti-inflammatory enzyme, platelet activating factor
acetylhydrolase I, PAF-AH(I) complex, through binding
mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC
is important for cell proliferation both in normal and
tumor tissues. Its expression is elevated in various
cell types undergoing mitosis or stimulated to
proliferate, with high expression levels observed in
leukemic cells and tumors. For a leukemic cell line,
human NUDC was shown to activate the thrombopoietin
(TPO) receptor (Mpl) by binding to its extracellular
domain, and promoting cell proliferation and
differentiation. This group also includes the human
broadly immunogenic tumor associated antigen, CML66,
which is highly expressed in a variety of solid tumors
and in leukemias. In normal tissues high expression of
CML66 is limited to testis and heart.
Length = 85
Score = 135 bits (343), Expect = 6e-41
Identities = 46/85 (54%), Positives = 61/85 (71%)
Query: 155 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYW 214
YSWTQ L EVTV++P+P GTKS+ V EI HLKVG+KG P++DGEL+ VK D+ W
Sbjct: 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTW 60
Query: 215 SIEDQKTVSILLTKQNQMEWWKCLI 239
++ED K + I L K+N+ EWW L+
Sbjct: 61 TLEDGKLLEITLEKRNEGEWWPSLV 85
>gnl|CDD|107241 cd06492, p23_mNUDC_like, p23-like NUD (nuclear distribution) C-like
domain of mammalian(m) NUDC and similar proteins.
Mammalian(m) NUDC associates both with the dynein
complex and also with an anti-inflammatory enzyme,
platelet activating factor acetylhydrolase I, PAF-AH(I)
complex, through binding mNUDF, the regulatory beta
subunit of PAF-AH(I). mNUDC is important for cell
proliferation both in normal and tumor tissues. Its
expression is elevated in various cell types undergoing
mitosis or stimulated to proliferate, with high
expression levels observed in leukemic cells and tumors.
For a leukemic cell line, human NUDC was shown to
activate the thrombopoietin (TPO) receptor (Mpl) by
binding to its extracellular domain, and promoting cell
proliferation and differentiation.
Length = 87
Score = 114 bits (287), Expect = 2e-32
Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 155 YSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDC 212
Y WTQ L EV + VP V K + V+ +I++ HLKVGLKGQPPIIDGEL+ VK ++
Sbjct: 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEES 60
Query: 213 YWSIEDQKTVSILLTKQNQMEWW 235
W IED K V++ L K N+MEWW
Sbjct: 61 SWLIEDGKVVTVNLEKINKMEWW 83
>gnl|CDD|218355 pfam04969, CS, CS domain. The CS and CHORD (pfam04968) are fused
into a single polypeptide chain in metazoans but are
found in separate proteins in plants; this is thought to
be indicative of an interaction between CS and CHORD. It
has been suggested that the CS domain is a binding
module for HSP90, implying that CS domain-containing
proteins are involved in recruiting heat shock proteins
to multiprotein assemblies.
Length = 78
Score = 82.6 bits (205), Expect = 1e-20
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 153 ENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQ---PPIIDGELHMAVKP 209
Y W Q L EVT+++P+ TK + V EIK LKV +KG ++DGEL + P
Sbjct: 1 PRYDWYQTLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIKGPGGKEYLLDGELFGPIDP 60
Query: 210 DDCYWSIEDQKTVSILLTK 228
++ W IED K V I L K
Sbjct: 61 EESSWKIEDTK-VEITLKK 78
>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include
p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1.
Both are co-chaperones for the heat shock protein (Hsp)
90. p23 binds Hsp90 and participates in the folding of
a number of Hsp90 clients, including the progesterone
receptor. p23 also has a passive chaperoning activity
and in addition may participate in prostaglandin
synthesis. Both p23 and Sba1p can regulate telomerase
activity. This group includes domains similar to the
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1). Sgt1 interacts with multiple
protein complexes and has the features of a
co-chaperone. Human (h) Sgt1 interacts with both Hsp70
and Hsp90, and has been shown to bind Hsp90 through its
CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a
subunit of both core kinetochore and SCF
(Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is
required for pathogen resistance in plants. This group
also includes the p23_like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR). hB-ind1 plays a role in the
signaling pathway mediated by the small GTPase Rac1,
NUDC is needed for nuclear movement, Melusin interacts
with two splice variants of beta1 integrin, and NCB5OR
plays a part in maintaining viable pancreatic beta
cells.
Length = 84
Score = 79.6 bits (197), Expect = 3e-19
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 157 WTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLK---GQPPIIDGELHMAVKPDDCY 213
W Q L EVT+++P+ TK V E L V +K G+ +++GEL + P++
Sbjct: 1 WYQTLDEVTITIPLKDVTKKD-VKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESK 59
Query: 214 WSIEDQKTVSILLTKQNQMEWWKCLI 239
W++ED + + I L K+ EWW L
Sbjct: 60 WTVED-RKIEITLKKKEPGEWWPRLE 84
>gnl|CDD|107243 cd06494, p23_NUDCD2_like, p23-like NUD (nuclear distribution)
C-like found in human NUDC domain-containing protein 2
(NUDCD2) and similar proteins. Little is known about
the function of the proteins in this subgroup.
Length = 93
Score = 68.3 bits (167), Expect = 7e-15
Identities = 28/76 (36%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 156 SWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWS 215
W Q + EV + V VP GT+++ V C++ + + +KGQ ++ G+L +V D+C W+
Sbjct: 9 CWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQE-VLKGKLFDSVVADECTWT 67
Query: 216 IEDQKTVSILLTKQNQ 231
+ED+K + I+LTK N+
Sbjct: 68 LEDRKLIRIVLTKSNR 83
>gnl|CDD|107244 cd06495, p23_NUDCD3_like, p23-like NUD (nuclear distribution)
C-like domain found in human NUDC domain-containing
protein 3 (NUDCD3) and similar proteins. Little is
known about the function of the proteins in this
subgroup.
Length = 102
Score = 56.0 bits (135), Expect = 3e-10
Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 153 ENYSWTQILQEVTVSVPVP-AGTKSRFVLCEIKKNHLKVGLK---GQPPIIDGELHMAVK 208
ENY+W+Q +V V VPVP K R V +++ + ++V ++ G+ +++GE +
Sbjct: 5 ENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKIN 64
Query: 209 PDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEID 246
++ WS+E K V + L+K +++ WW ++KG EID
Sbjct: 65 TENSLWSLEPGKCVLLSLSKCSEV-WWNAVLKGEEEID 101
>gnl|CDD|107242 cd06493, p23_NUDCD1_like, p23_NUDCD1: p23-like NUD (nuclear
distribution) C-like domain found in human NUD (nuclear
distribution) C domain-containing protein 1, NUDCD1
(also known as CML66), and similar proteins.
NUDCD1/CML66 is a broadly immunogenic tumor associated
antigen, which is highly expressed in a variety of solid
tumors and in leukemias. In normal tissues high
expression of NUDCD1/CML66 is limited to testis and
heart.
Length = 85
Score = 52.5 bits (126), Expect = 3e-09
Identities = 20/85 (23%), Positives = 49/85 (57%)
Query: 155 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYW 214
Y W Q +++T+++ +P T + + +H+ + LK Q P+++G+L+ ++ + W
Sbjct: 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTW 60
Query: 215 SIEDQKTVSILLTKQNQMEWWKCLI 239
I++ K++ + L K+++ W L+
Sbjct: 61 IIKENKSLEVSLIKKDEGPTWPELV 85
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 36.8 bits (86), Expect = 0.001
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 157 WTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLK----------GQPPIIDGELHMA 206
W Q EV V+V +P G K + E++ N L + K EL
Sbjct: 1 WYQTDDEVVVTVDLP-GVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPED 59
Query: 207 VKPDDCYWSIEDQKTVSILLTK 228
V P+ S+E+ + I L K
Sbjct: 60 VDPEKSKASLEN-GVLEITLPK 80
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 38.4 bits (90), Expect = 0.003
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 50 LEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKMKEE 109
L E +E +FLT + + + EK +K +++ A K KEE
Sbjct: 388 LAAFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEK-----KEKKKKAFAGKKKEE 442
Query: 110 KKEEEKFEDLPTMKVQKAPPPEPQLDANGNPARAPNKGNGLD 151
++EEEK E K ++ E + + + K L
Sbjct: 443 EEEEEK-EKKEEEKEEEEEEAEEEKEEEEEKKK---KQATLF 480
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 31.5 bits (71), Expect = 0.36
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 96 PHQEEVKAKKMKEEKKEEEKFEDLPTMKVQKAPPPEPQLDANGNPARAPNKGN 148
PH + K+K K+E +E+++ + ++ +K P Q + P + P + N
Sbjct: 143 PHMMKTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPN 195
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 32.2 bits (73), Expect = 0.36
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 85 SNTKKQPQPQSPHQEEVKAKKMKEEKKEEEKFEDLPTMKVQKAPPPEPQLDANGNPARAP 144
S T+ + + + +EE++ KK KEEK +E++ + L QK + Q + P
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAA--QKEAKAKLQAQQASDGTNVP 59
Query: 145 NKG 147
K
Sbjct: 60 KKS 62
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.9 bits (73), Expect = 0.39
Identities = 13/113 (11%), Positives = 30/113 (26%), Gaps = 2/113 (1%)
Query: 10 DENKPDPKKNPSASASSSSPSSAKTSSFSATLDPSNPLGFLEKAFEFVAKESDFLTKDAA 69
+ + P + S S D + G + + AA
Sbjct: 1261 SSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAA 1320
Query: 70 EKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKA--KKMKEEKKEEEKFEDLP 120
K+ + + K + + Q + + +K K + E+ +
Sbjct: 1321 LKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEV 1373
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 31.4 bits (72), Expect = 0.39
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 56 FVAKES--DFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSP--HQEEVKAKKMKEEKK 111
V E+ D L+K A+ +AA A K+ K+ E + ++ +EE++
Sbjct: 254 IVTPETADDILSKAVAQALALAAALADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEE 313
Query: 112 EEEKFEDL 119
EE E+
Sbjct: 314 EEPSEEEA 321
>gnl|CDD|219594 pfam07816, DUF1645, Protein of unknown function (DUF1645). These
sequences are derived from a number of hypothetical
plant proteins. The region in question is approximately
270 amino acids long. Some members of this family are
annotated as yeast pheromone receptor proteins AR781 but
no literature was found to support this.
Length = 191
Score = 30.2 bits (68), Expect = 0.83
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 17/111 (15%)
Query: 9 EDENKPDPKKNPSASASSSSPSSAKTSSFSATLDPSNPLGFLEKAFEFVAKESDFL---- 64
+ PS+ SSSP+S+ S S G ++ + SD L
Sbjct: 68 STDEGELEGVPPSSYCVSSSPASSSRKSSST--------GSSKR-----WRLSDLLLFRS 114
Query: 65 TKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKKEEEK 115
D + + A + K S P P + + + K+ +
Sbjct: 115 ASDGKDAFVFDAAKDPLLKYSPLSSPASPVKPASAKSRESSASKGKRRGKT 165
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 29.9 bits (67), Expect = 1.4
Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 13 KPDPKKNPSASASSSSPSSAKTSSFSATLDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQ 72
K S ++ + SAK ++ +A + +K + K++ K AA+K
Sbjct: 219 AKSAAKKVSKKKAAKTAVSAKKAAKTA----AKAAKKAKKTAKKALKKAAKAVKKAAKKA 274
Query: 73 IVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKKEEEK 115
AA +AAK + TK + + + ++ A + + K
Sbjct: 275 AKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPK 317
>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits
[Posttranslational modification, protein turnover,
chaperones].
Length = 236
Score = 29.6 bits (67), Expect = 1.4
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 47 LGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEKSSNTKK 89
GFLEK + + L+ + A + V A+RAA E+ + +
Sbjct: 168 YGFLEKEYR------EDLSLEEAIELAVKALRAAIERDAASGG 204
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional.
Length = 160
Score = 28.8 bits (65), Expect = 1.7
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 62 DFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKM 106
DFL + AA I A + E S ++ QP+ + K ++
Sbjct: 104 DFLKRVAANDAIKAEAKKKGELPSTKRQPAQPRPAGFVKPKPTEV 148
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
Length = 852
Score = 29.7 bits (67), Expect = 1.9
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 11 ENKPDPKKNPSASASSSSPSSAKTSSFSATLDPSNPLGFLEKAFEFV--AKESDF 63
+ + K P AS S +SS S+ D S LE F+ AKES
Sbjct: 746 DYRLTSKPIPEASTSEEVSPVLPSSSMSSDEDQS-----LEYELSFIREAKESGV 795
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 29.5 bits (66), Expect = 2.0
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 64 LTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKK----EEEKFEDL 119
L+ D A K++ + K+P+ +S +EE + +++KEEKK + ++
Sbjct: 71 LSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKD 130
Query: 120 PTMKVQKAPPPEPQ 133
K + P+
Sbjct: 131 RKPKEEAKEKRPPK 144
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 29.0 bits (65), Expect = 2.4
Identities = 13/66 (19%), Positives = 24/66 (36%)
Query: 79 AAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKKEEEKFEDLPTMKVQKAPPPEPQLDANG 138
+ + K + +P+ + + K K + K + K + P K + A
Sbjct: 74 ETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPN 133
Query: 139 NPARAP 144
PAR P
Sbjct: 134 QPARPP 139
>gnl|CDD|215406 PLN02761, PLN02761, lipase class 3 family protein.
Length = 527
Score = 29.2 bits (65), Expect = 2.9
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 12/101 (11%)
Query: 24 ASSSSPSSAKTSSFSATLDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEK 83
AS+S P + K F ++ P+ F + + + + +
Sbjct: 2 ASASLPITLKNPRFFSS-SPNKI---------FKTQPQTLILTTKFKTCSIICSSSCTSI 51
Query: 84 SSNTKKQPQPQSPHQEEVKAKKMKEEKKEEEKFEDLPTMKV 124
SS+T +Q Q Q V K +EE +EE + +++ ++
Sbjct: 52 SSSTTQQKQSNK--QTHVSDNKREEEPEEELEEKEVSLREI 90
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 29.0 bits (65), Expect = 3.1
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 19/144 (13%)
Query: 8 QEDENKPDPKKNPSASASSSSPSSAKTSS--FSATLDPSNPLGFLEKAFEFVAKESDFLT 65
+ ++N P S S S+ + A+ DP L+ S + T
Sbjct: 76 RYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIP-DLQ------PDPSLWGT 128
Query: 66 KDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKKEEEKFEDLPTMKVQ 125
E Q A + QPQPQ+P Q+ + ++++ + ++ ++ LP Q
Sbjct: 129 APKPEPQPPQA----------PESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQ 178
Query: 126 KAPPPEPQLDANGNPARAPNKGNG 149
P P A P + G
Sbjct: 179 VLPQGMPPRQAAFPQQGPPEQPPG 202
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 28.8 bits (65), Expect = 3.6
Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 70 EKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKK-EEEKFEDLPTMKVQKAP 128
++ + A ++ T P + A K K+ A
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 129 PPEPQLDANGNPARAPNKGNGLDLENYSWTQIL 161
P EP N A AP N +L W QIL
Sbjct: 421 PTEPSPTPPANAANAPPSLNLEEL----WQQIL 449
>gnl|CDD|221391 pfam12042, RP1-2, Tubuliform egg casing silk strands structural
domain. Spiders use fibroins to make silk strands.
This family includes tubuliform silk fibroins which are
used to protect egg cases. This domain is a structural
domain which is found in repeats of up to 20 in many
individuals (although this is not necessarily the
case). RP1 makes up structural domains in the N
terminal while RP2 makes up structural domains in the C
terminal.
Length = 167
Score = 27.9 bits (62), Expect = 3.8
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 21 SASASSSSPSSAKTSSFSATLDPS 44
++ A+SS+ SS+ S+F+ +L +
Sbjct: 3 ASQAASSASSSSSASAFAQSLSSA 26
>gnl|CDD|215167 PLN02296, PLN02296, carbonate dehydratase.
Length = 269
Score = 28.2 bits (63), Expect = 4.4
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 17/101 (16%)
Query: 45 NPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAK 104
NP FL K +E F+++ A +A + AA+ N K +E++ +
Sbjct: 184 NPAKFLRK---LTEEEIAFISQSATNYSNLAQVHAAE----NAKSF--------DEIEFE 228
Query: 105 KMKEEKKEEEKFEDLPTM-KVQKAPPPEPQLDANGNPARAP 144
K+ KK + E+ +M V + PPE L N P +AP
Sbjct: 229 KVLR-KKFARRDEEYDSMLGVVRETPPELILPDNILPDKAP 268
>gnl|CDD|215585 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional.
Length = 367
Score = 28.4 bits (63), Expect = 4.5
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 19/93 (20%)
Query: 22 ASASSSSPSSAKTSSFSATLDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAK 81
+A+ S PSS +S + T S L+K + + V ++RA
Sbjct: 5 VNAAVSLPSSKSSSLPARTSAISPERIRLKKGPLYYRNNVSSGKR-------VVSIRA-- 55
Query: 82 EKSSNTKKQPQPQSPHQEEVKAKKMKEEKKEEE 114
Q + E AK +K KK EE
Sbjct: 56 ----------QVTTETTTEAPAKVVKVSKKNEE 78
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 28.4 bits (64), Expect = 5.0
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 44 SNPLGFLEKAFEF-VAKESDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVK 102
PL + E S K +KQ A +A KE++ + + E
Sbjct: 389 DKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAK------KKAEAA 442
Query: 103 AKKMKEEKKEEEKFEDLP 120
AKK K E +K + P
Sbjct: 443 AKKAKGPDGETKKVDPDP 460
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 28.2 bits (63), Expect = 5.5
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 66 KDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKKEEEKFEDLPTMKVQ 125
K EK+ A++A K++ + ++ + + H+ + K +E K +
Sbjct: 563 KLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQKPTNF 622
Query: 126 KAPPPEPQLDANGNPARAPNKG 147
+A D G+ R G
Sbjct: 623 QA-------DKIGDKVRIRYFG 637
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 28.2 bits (63), Expect = 5.5
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 7/145 (4%)
Query: 2 AIISDFQEDENKPDPKKNPSASASSSSPSSAKTSSFSATLDPSNPLGFLEKAFEFVAKES 61
+++SD K K SA +P S + S + S+P A + +
Sbjct: 621 SLLSDLDALSPKEGDGKKSSADRKPKTPPSRAPPA-SLSKPASSPDASQTSASFDLDPDF 679
Query: 62 DFLTKDAA-EKQIVAAMRAAKEKSSNTKKQP-----QPQSPHQEEVKAKKMKEEKKEEEK 115
+ T + E + + A + +P + + + E
Sbjct: 680 ELATHQSVPEAALASGSAPAPPPVPDPYDRPPWEEAPEVASANDGPNNAAEGNLSESVED 739
Query: 116 FEDLPTMKVQKAPPPEPQLDANGNP 140
+ V++ +PQ+ A
Sbjct: 740 ASNSELQAVEQQATHQPQVQAEAQS 764
>gnl|CDD|222651 pfam14286, DHHW, DHHW protein. This family of proteins is found in
bacteria. Proteins in this family are typically between
366 and 404 amino acids in length. There is a conserved
DHHW motif.
Length = 378
Score = 28.1 bits (63), Expect = 5.7
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 4 ISDFQEDENKPDPKKN-------PSASASSSSPSSAKTSS---FSATLDPSNPLGFLEKA 53
D E E + P + S + SS SS + SS +DP + + F +
Sbjct: 67 KDDIPETEGETAPTQPIQTVAPEESDTVSSEDASSNQDSSAETTVIPVDPDDSVVFDDGK 126
Query: 54 FEFVAKESDFLTKDAA 69
+ + ++ A
Sbjct: 127 VQGEIQNGVYVYGGRA 142
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 28.1 bits (62), Expect = 6.3
Identities = 20/90 (22%), Positives = 32/90 (35%)
Query: 88 KKQPQPQSPHQEEVKAKKMKEEKKEEEKFEDLPTMKVQKAPPPEPQLDANGNPARAPNKG 147
KK +P+ ++E + ++ K++KKE E F+ L +A+ G
Sbjct: 197 KKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSG 256
Query: 148 NGLDLENYSWTQILQEVTVSVPVPAGTKSR 177
D E E T P K R
Sbjct: 257 TAPDSEPDEPKDAEAEETKKSPKHKKKKQR 286
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 27.7 bits (62), Expect = 6.5
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 108 EEKKEEEKFEDLPTMKVQKAPPPEPQLDANG 138
EE++EEE+ E+ P +V P PE QL A+G
Sbjct: 408 EEEEEEEEEEEEPVAEVMMMPAPEMQLPASG 438
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 27.3 bits (61), Expect = 6.8
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 65 TKDAAEKQIVAAMRAAKEKSSNTKKQPQP--QSPHQEEVKAKKMKEEKKEEEKFEDLPTM 122
KQ A +A K+K K+ + + + E + ++K K+ KF
Sbjct: 13 LAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPGKFYVPAEH 72
Query: 123 KV 124
K+
Sbjct: 73 KL 74
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 28.0 bits (62), Expect = 7.4
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 51 EKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEE-VKAKKMKEE 109
E+ FE+ + + + K A + + ++ K++P+ + P+ +E E
Sbjct: 762 EEEFEYPRM-YEEASGKSVRKVNTAVLSTTIKAAARAKQKPKEKGPNDKEIKIESPSVET 820
Query: 110 KKE-------EEKFEDLPTMKVQKAPPPE 131
+ E EEK D P + K P
Sbjct: 821 EGERCTIKQREEKGIDAPAILNVKKKKPY 849
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein.
Length = 1135
Score = 27.7 bits (62), Expect = 7.8
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 98 QEEVKAKKMKEEKKEEEKFEDLPTMKVQKA 127
+EE+KAKK + E + E L KV KA
Sbjct: 498 REEIKAKKKQRESGGGDPSEPL---KVPKA 524
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 27.0 bits (60), Expect = 7.8
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 64 LTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKKEEEKFEDLPTMK 123
T+ AE + A + KE N KK ++ ++ K ++ EKK E + K
Sbjct: 94 FTEAQAEAKF-EAWKEEKEGKVNAKKDKLSKA--KKAAKKAALEAEKKVNEARAEAVAEK 150
Query: 124 VQKAPPPEPQLDANGNPARAP 144
+A
Sbjct: 151 KAAEAAAVAAEEAAAAEEEEA 171
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.125 0.354
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,385,481
Number of extensions: 1223943
Number of successful extensions: 2167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1969
Number of HSP's successfully gapped: 184
Length of query: 272
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 177
Effective length of database: 6,723,972
Effective search space: 1190143044
Effective search space used: 1190143044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.5 bits)