RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 046801
(272 letters)
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transport protein; NMR {Mus musculus} SCOP:
b.15.1.4
Length = 131
Score = 172 bits (437), Expect = 8e-55
Identities = 64/124 (51%), Positives = 86/124 (69%), Gaps = 2/124 (1%)
Query: 147 GNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELH 204
+G NY WTQ L E+ ++VP V K + V+ +I++ HL+VGLKGQPP++DGEL+
Sbjct: 2 SSGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELY 61
Query: 205 MAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPET 264
VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD ET
Sbjct: 62 NEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSET 121
Query: 265 RSTV 268
RS V
Sbjct: 122 RSMV 125
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2,
structure initiative; 1.66A {Encephalitozoon cuniculi}
Length = 131
Score = 154 bits (390), Expect = 1e-47
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 153 ENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDC 212
Y+W Q L E+ + PV S + + + V +G+ +IDGEL V
Sbjct: 5 AKYTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQGE-IVIDGELLHEVDVSSL 63
Query: 213 YWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKV-EPENSKLSDLDPETRSTVEKM 271
+W I V + +TK + EWW L+ G +D QK+ E +++ +S LD E R VEKM
Sbjct: 64 WWVING-DVVDVNVTK-KRNEWWDSLLVGSESVDVQKLAENKHADMSMLDAEAREVVEKM 121
Query: 272 M 272
M
Sbjct: 122 M 122
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein
cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B*
2cr0_A
Length = 121
Score = 151 bits (382), Expect = 1e-46
Identities = 56/114 (49%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Query: 144 PNKGNGLDLENYSWTQILQE--VTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDG 201
PN GNG DL NY WTQ L E + V V K + ++ +I++ HL+VGLKGQP IIDG
Sbjct: 8 PNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDG 67
Query: 202 ELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENS 255
EL+ VK ++ W I D V++ L K N+MEWW L+ PEI+T+K+ PENS
Sbjct: 68 ELYNEVKVEESSWLIADGAVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENS 121
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Length = 124
Score = 130 bits (327), Expect = 2e-38
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 142 RAPNKGNGLDLENYSWTQILQEVTVSVPVPAGT-KSRFVLCEIKKNHLKVGLK---GQPP 197
+ P+ NG ENY+W+Q ++ V VPVP K + V + + ++V + G+
Sbjct: 9 KNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERV 68
Query: 198 IIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKV 250
+++G+L + + WS+E K V + L+K + WW +++G ID
Sbjct: 69 LMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEY-WWNAILEGEEPIDIDSG 120
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement
protein, structural genomics, joint center for
structural genomics, JCSG; 1.95A {Mus musculus}
Length = 157
Score = 115 bits (288), Expect = 3e-32
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 153 ENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDC 212
W Q L+EV + V VP GT+++ + C ++ H+ + + G+ I+ G+L + D+
Sbjct: 14 PWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGR-EILKGKLFDSTIADEG 72
Query: 213 YWSIEDQKTVSILLT--KQNQMEWWKCLIKGGPEIDTQKVEPENSKL 257
W++ED+K V I+LT K++ W L++ D + KL
Sbjct: 73 TWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKL 119
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 127
Score = 42.0 bits (98), Expect = 2e-05
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 143 APNKGNGLDLENYSWTQILQEVTVSVPVP--AGTKSRFVLCEIKKNHLKVGLKGQP---- 196
G + + NY W Q + V + + + + V + + +K
Sbjct: 11 PITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSY 70
Query: 197 PIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKG 241
+I L + + ++ V IL K+ + W L +
Sbjct: 71 SMIVNNLLKPISVEGSSKKVKTDT-VLILCRKKVENTRWDYLTQV 114
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response; HET:
ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 36.7 bits (85), Expect = 9e-04
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 155 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLK---GQPPIIDGELHMAVKPDD 211
+ + Q +EV V+V G + V + + L V ++ + L + PD
Sbjct: 5 HEYYQKPEEVVVTVFA-KGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDK 63
Query: 212 CYWSIEDQKTVSILLTKQNQMEW 234
C + + K + I L K + + W
Sbjct: 64 CKYEVLSTK-IEICLAKADIITW 85
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.006
Identities = 28/154 (18%), Positives = 41/154 (26%), Gaps = 50/154 (32%)
Query: 1 MAIISDFQEDENKPDPKKNP-------SASASSS---SPSSA--------KTSSFSATLD 42
A D + P +A AS + S S T + D
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 43 PS----------NP----LGFLEKAFEFVAKESDFLTKDAAE--------KQIVAA--MR 78
NP F ++A ++V + T E +Q VAA +R
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR 1860
Query: 79 A-------AKE-KSSNTKKQPQPQSPHQEEVKAK 104
A K +S EEV+
Sbjct: 1861 ALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 30.0 bits (67), Expect = 1.2
Identities = 42/263 (15%), Positives = 76/263 (28%), Gaps = 88/263 (33%)
Query: 15 DPKKNPSASASSSSPSSAKTSSFSATLDPSNPL-GFLEKA-FEFVAKESDFLTKDAAE-- 70
+P P S P S PL G ++ A + AK F +
Sbjct: 221 NPSNTPDKDYLLSIPISC-------------PLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 71 -------KQIVAAMRAAKEKS-----SNTKK----------QPQPQSPHQEEVKAKKMKE 108
+ +V A+ A+ S + +K + P+ + +++
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT-SLPPSILED 326
Query: 109 EKKEEEKF-------EDLPTMKVQKA-------PPPEPQLDA---NGNPARAPNK----G 147
+ E +L +VQ P Q++ NG G
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG-----AKNLVVSG 381
Query: 148 NGLDLENYSWTQILQEVTVSVPVPAGT-KSRFVLCEIKKNH----LKVG-------LKGQ 195
L Y L++ P+G +SR E K L V L
Sbjct: 382 PPQSL--YGLNLTLRKAK----APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 196 PPIIDGELHMAVKPDDCYWSIED 218
+I+ +L ++ ++ +D
Sbjct: 436 SDLINKDL----VKNNVSFNAKD 454
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.057
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 10/53 (18%)
Query: 66 KDAAEKQIVAAMR--AAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKKEEEKF 116
DAA K + R A K+ + Q E K + ++ F
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQ--------RQSEQVEKNKINNRIADKAF 145
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich;
2.49A {Homo sapiens} SCOP: b.15.1.2
Length = 125
Score = 31.4 bits (71), Expect = 0.11
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Query: 157 WTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKV----GLKGQPPIIDGELHMAVKPDDC 212
W V + V V +K+ L G + + +L + P+D
Sbjct: 8 WYDRRDYVFIEFCVEDSKD---VNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDS 64
Query: 213 YWSIEDQKTVSILLTKQNQMEWWKCLIK 240
D+ + L K + W L K
Sbjct: 65 KHKRTDRS-ILCCLRKGESGQSWPRLTK 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.29
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 109 EKKEEEKFEDLPTMKVQKAPPPEPQLDANGN 139
EK+ +K + ++K+ A P L
Sbjct: 18 EKQALKKLQA--SLKLY-ADDSAPALAIKAT 45
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 31.7 bits (71), Expect = 0.29
Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 17/127 (13%)
Query: 30 SSAKTSSFSATLDPSNPLGFLEKAFEFV--AKESDF----LTKDAAEKQIVAAMRA---- 79
S + T + + S+ F+ AKE F + ++A+ K++ A
Sbjct: 761 SLSFTPTTVIGIRGSD---QAIPKFQMNCYAKEDAFSYPRMYEEASGKEVEKVATAVLST 817
Query: 80 -AKEKSSNTKKQPQPQSPHQEEVKA---KKMKEEKKEEEKFEDLPTMKVQKAPPPEPQLD 135
A+ K+ K + + +E+ K K+ + E ++ E + +
Sbjct: 818 TARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPY 877
Query: 136 ANGNPAR 142
N R
Sbjct: 878 KVDNMTR 884
Score = 30.6 bits (68), Expect = 0.73
Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 22/161 (13%)
Query: 8 QEDENKPDPKKNPSASASSSSPSSAKTSSFSATLDPSNPLGFLEKAFEFVAKESDFLTKD 67
E+ + + +K +A S+++ + A+ P+ E + +E++
Sbjct: 799 YEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIK 858
Query: 68 AAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKA----------KKM----------- 106
++ + P Q + +K
Sbjct: 859 ETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKFKGNNGVVVLRD 918
Query: 107 KEEKKEEEKFEDLPTMKVQKAPPPEP-QLDANGNPARAPNK 146
+E K+ E + MK AP P P ++D N + A
Sbjct: 919 REPKEPVALIETVRQMKDVNAPLPTPFKVDDNVDFPSALQP 959
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure
initiative, modified lysin, structural genomics; HET:
BGC; 2.45A {Clostridium perfringens}
Length = 328
Score = 30.6 bits (70), Expect = 0.55
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 68 AAEKQIVAAMRAAKEKSSN--TKKQPQPQSPHQEEVKAKKMKEEKKEEEKFEDL 119
+ I ++ A S+ + ++ + V AK +++ EEEK++
Sbjct: 268 MNKMPIEDIVKFAMTMSNITISHEETIHPDMALDTVLAK-LEKTTWEEEKYDLN 320
>1yio_A Response regulatory protein; transcription regulation, DNA binding
protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2
c.23.1.1 PDB: 1zn2_A
Length = 208
Score = 29.6 bits (67), Expect = 0.82
Identities = 6/39 (15%), Positives = 19/39 (48%)
Query: 61 SDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQE 99
+FL K E+ ++ A+ + ++ ++ + Q ++
Sbjct: 100 IEFLPKPFEEQALLDAIEQGLQLNAERRQARETQDQLEQ 138
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 29.2 bits (64), Expect = 1.9
Identities = 14/103 (13%), Positives = 25/103 (24%)
Query: 39 ATLDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQ 98
T P N E ++ K + E + + P S
Sbjct: 23 ETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEA 82
Query: 99 EEVKAKKMKEEKKEEEKFEDLPTMKVQKAPPPEPQLDANGNPA 141
+ + K EEK ++ P+ + P
Sbjct: 83 ATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPE 125
>3cz5_A Two-component response regulator, LUXR family; structural genomics,
protein structure initiative; 2.70A {Aurantimonas SP}
Length = 153
Score = 27.9 bits (63), Expect = 2.5
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 63 FLTKDAAEKQIVAAMRAA 80
++TK + ++V A+ A
Sbjct: 105 YVTKSSDPAELVQAIEAI 122
>2zai_A Oligosaccharyl transferase STT3 subunit related P; multi-domain
proteins (alpha and beta); 2.70A {Pyrococcus furiosus}
PDB: 2zag_A
Length = 497
Score = 28.2 bits (62), Expect = 2.8
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 164 VTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGEL 203
+ V+V +P T RFVL ++K +G+ P ++GE+
Sbjct: 329 IAVNVTLPNATSYRFVL--VQKG--PIGVLLDAPKVNGEI 364
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2,
protein structure initiative, PO transcription regulator
EVGA; 1.45A {Escherichia coli k-12}
Length = 134
Score = 27.4 bits (62), Expect = 3.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 63 FLTKDAAEKQIVAAMRAA 80
F++K I+AA+ AA
Sbjct: 100 FVSKKEGMNNIIAAIEAA 117
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics,
PSI-2, protein structure initiative; 2.10A {Silicibacter
pomeroyi dss-3}
Length = 154
Score = 27.5 bits (62), Expect = 3.4
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 63 FLTKDAAEKQIVAAMRAA 80
F+ K A + ++ A+
Sbjct: 104 FIPKSADPQVLIHAVSLI 121
>3eul_A Possible nitrate/nitrite response transcriptional regulatory
protein NARL (DNA-binding...; central beta strand
flanked by alpha helices; 1.90A {Mycobacterium
tuberculosis}
Length = 152
Score = 27.1 bits (61), Expect = 3.9
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 63 FLTKDAAEKQIVAAMRAA 80
FL KD+ +IV A+
Sbjct: 115 FLLKDSTRTEIVKAVLDC 132
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 27.7 bits (62), Expect = 4.4
Identities = 7/55 (12%), Positives = 12/55 (21%)
Query: 67 DAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKKEEEKFEDLPT 121
+ +S N ++P E E+ F L
Sbjct: 5 HHHSSGVDLGTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCN 59
>3tuf_B Stage II sporulation protein Q; intercellular signalling,
intercellular channel, sporulation engulfment and
signalling, intercellular space; 2.26A {Bacillus
subtilis} PDB: 3uz0_B
Length = 245
Score = 27.3 bits (60), Expect = 5.3
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 43 PSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVK 102
NPL F++K + E + Q + + + +K + + ++
Sbjct: 175 AMNPLNFMDKPVS--SIEKAATQETEESIQQSSEKKDGSTEKGTEEKSGEKKDDSTDKSG 232
Query: 103 AKKMKEEKKEEE 114
+K+ + E+
Sbjct: 233 SKESSTTEDTEQ 244
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 26.6 bits (58), Expect = 7.6
Identities = 12/82 (14%), Positives = 28/82 (34%)
Query: 68 AAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKKEEEKFEDLPTMKVQKA 127
+ + +P+P+ + +A + E+ K + K + P KVQ+
Sbjct: 40 VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQ 99
Query: 128 PPPEPQLDANGNPARAPNKGNG 149
P + + + + N
Sbjct: 100 PKRDVKPVESRPASPFENTAPA 121
>1a04_A Nitrate/nitrite response regulator protein NARL; signal
transduction protein, response regulators, two-
component systems; 2.20A {Escherichia coli} SCOP:
a.4.6.2 c.23.1.1 PDB: 1rnl_A
Length = 215
Score = 26.7 bits (60), Expect = 8.0
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 63 FLTKDAAEKQIVAAMRAA 80
+L KD + ++ A+ A
Sbjct: 105 YLLKDMEPEDLLKALHQA 122
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal
transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1
PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Length = 120
Score = 25.9 bits (58), Expect = 8.2
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 61 SDFLTKDAAEKQIVAAMRAAKE 82
DF+ K ++V A+ +
Sbjct: 99 KDFIVKPFQPSRVVEALNKVSK 120
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 26.3 bits (57), Expect = 8.4
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 70 EKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKKEEEK 115
+ + A+R K+K +N ++ + Q + K E K+ ++
Sbjct: 104 KAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQ 149
>3rqi_A Response regulator protein; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET: PHD
CIT; 1.70A {Burkholderia pseudomallei}
Length = 184
Score = 26.1 bits (58), Expect = 9.6
Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 62 DFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKKE 112
++L K A + I+AA++ + + ++P V + + ++
Sbjct: 104 NYLAKPANVESILAALQTNASEVQ---AEEALENPVVLSVDRLEWEHIQRV 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.125 0.354
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,936,222
Number of extensions: 223513
Number of successful extensions: 630
Number of sequences better than 10.0: 1
Number of HSP's gapped: 596
Number of HSP's successfully gapped: 62
Length of query: 272
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 180
Effective length of database: 4,133,061
Effective search space: 743950980
Effective search space used: 743950980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.1 bits)