RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 046801
         (272 letters)



>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 131

 Score =  158 bits (400), Expect = 1e-49
 Identities = 64/128 (50%), Positives = 86/128 (67%), Gaps = 2/128 (1%)

Query: 147 GNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELH 204
            +G    NY WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQPP++DGEL+
Sbjct: 2   SSGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELY 61

Query: 205 MAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPET 264
             VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ET
Sbjct: 62  NEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSET 121

Query: 265 RSTVEKMM 272
           RS V    
Sbjct: 122 RSMVSGPS 129


>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3
           (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 124

 Score =  120 bits (302), Expect = 4e-35
 Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 142 RAPNKGNGLDLENYSWTQILQEVTVSVPVPAG-TKSRFVLCEIKKNHLKVGLKG---QPP 197
           + P+  NG   ENY+W+Q   ++ V VPVP    K + V   +  + ++V +     +  
Sbjct: 9   KNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERV 68

Query: 198 IIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQK 249
           +++G+L   +  +   WS+E  K V + L+K  +  WW  +++G   ID   
Sbjct: 69  LMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEY-WWNAILEGEEPIDIDS 119


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 68.0 bits (166), Expect = 2e-15
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 155 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLK---GQPPIIDGELHMAVKPDD 211
           Y W Q   +V +++ +    +   V  E  +  L   +K   G+   +  EL   + P+ 
Sbjct: 5   YDWYQTESQVVITLMIK-NVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ 63

Query: 212 CYWSIEDQKTVSILLTKQNQMEWWKCLIKGG 242
             + +   K + I L K   +  W+ L   G
Sbjct: 64  STFKVLSTK-IEIKLKKPEAV-RWEKLEGQG 92


>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 110

 Score = 68.1 bits (166), Expect = 3e-15
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 8/100 (8%)

Query: 155 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPP----IIDGELHMAVKPD 210
             W      V +   V        V    +K+ L     G       + + +L   + P+
Sbjct: 6   AKWYDRRDYVFIEFCVEDSKD---VNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPN 62

Query: 211 DCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKV 250
           D      D+  +   L K    + W  L K   +++   V
Sbjct: 63  DSKHKRTDRS-ILCCLRKGESGQSWPRLTKERAKLNWLSV 101


>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
           USP19 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 28.8 bits (64), Expect = 0.33
 Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 18/100 (18%)

Query: 154 NYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPP---------------I 198
           N S+ +    V V V V             ++    +  + +                  
Sbjct: 22  NDSYEKGPDSVVVHVYVK-EICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFR 80

Query: 199 IDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCL 238
              +L   ++P+ C +     + + I L K+   + W  L
Sbjct: 81  WQVKLRNLIEPEQCTFCFTASR-IDICLRKRQS-QRWGGL 118


>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
           {Thermus thermophilus, AspRS-2 [TaxId: 274]}
          Length = 304

 Score = 26.3 bits (57), Expect = 3.8
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 94  QSPHQEEVKAKKMKEEKKEEEKFEDL 119
           Q  H+ E   + +K +  + E F   
Sbjct: 241 QRIHRYEELLESLKAKGMDPEAFHGY 266


>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae
           [TaxId: 108330]}
          Length = 299

 Score = 25.5 bits (55), Expect = 7.0
 Identities = 7/44 (15%), Positives = 16/44 (36%)

Query: 40  TLDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEK 83
            L        +E+ +  +A + D           +A  RA+ ++
Sbjct: 253 ALSVDMVPSLIEQGYRAIAVQFDVWGLSRLVHGSLAQARASAKQ 296


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.307    0.125    0.354 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 973,794
Number of extensions: 44582
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 17
Length of query: 272
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,254,276
Effective search space: 235803888
Effective search space used: 235803888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.1 bits)