BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046803
         (580 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/578 (68%), Positives = 492/578 (85%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           + Q HSP +EA+L++GPRL+ LQQVHAH+IV+G  RSRS+LTKL+SLVC AG ITYA+R+
Sbjct: 86  DTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRL 145

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P+PDSFLF++L+   SK  FS D++LFYRRM+ S    SNYTF++VIK+CA LS L
Sbjct: 146 FPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSAL 205

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            LG+ +H HV V GY SD++VQAAL+  YAK++++ VA+KVFD MP ++++AWNS+ISGY
Sbjct: 206 RLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGY 265

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
           +QNG  +E+IGLF+LM + G  PDS T V +L++C+QLG +D G W+H++  G G D+NV
Sbjct: 266 DQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNV 325

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           VL TSLINMY RCGNVSKARE+FD M E NV+ WTAMISGYGMHGYG +A+ELF  MRA+
Sbjct: 326 VLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAY 385

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G RPNN+TFVAVLSACAH+GL+ +G RVF+SM++ YGL+PGVEH+VCMVD+FGRAGLLN+
Sbjct: 386 GPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLND 445

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           AY+F+K  I ++P PAVWT+MLGAC+MH+NFDLGV+VAEH+LSVEPENPGHYVMLSNIYA
Sbjct: 446 AYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYA 505

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
           LAGRMDRVE+VRN+M ++ LKK VGYST+E+++K YLFSMGDKSHP TN IY+YLDELM 
Sbjct: 506 LAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMC 565

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           RC E+GYVP  ES MH+LEEEER+Y+LRYHSEKLALAFGL++T+ G TIRIVKNLR+C D
Sbjct: 566 RCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICED 625

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CHSAIK IS+  +REIIVRD+ RFHHFK GSCSCLDYW
Sbjct: 626 CHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/578 (68%), Positives = 492/578 (85%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           + Q HSP +EA+L++GPRL+ LQQVHAH+IV+G  RSRS+LTKL+SLVC AG ITYA+R+
Sbjct: 22  DTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRL 81

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P+PDSFLF++L+   SK  FS D++LFYRRM+ S    SNYTF++VIK+CA LS L
Sbjct: 82  FPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSAL 141

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            LG+ +H HV V GY SD++VQAAL+  YAK++++ VA+KVFD MP ++++AWNS+ISGY
Sbjct: 142 RLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGY 201

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
           +QNG  +E+IGLF+LM + G  PDS T V +L++C+QLG +D G W+H++  G G D+NV
Sbjct: 202 DQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNV 261

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           VL TSLINMY RCGNVSKARE+FD M E NV+ WTAMISGYGMHGYG +A+ELF  MRA+
Sbjct: 262 VLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAY 321

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G RPNN+TFVAVLSACAH+GL+ +G RVF+SM++ YGL+PGVEH+VCMVD+FGRAGLLN+
Sbjct: 322 GPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLND 381

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           AY+F+K  I ++P PAVWT+MLGAC+MH+NFDLGV+VAEH+LSVEPENPGHYVMLSNIYA
Sbjct: 382 AYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYA 441

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
           LAGRMDRVE+VRN+M ++ LKK VGYST+E+++K YLFSMGDKSHP TN IY+YLDELM 
Sbjct: 442 LAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMC 501

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           RC E+GYVP  ES MH+LEEEER+Y+LRYHSEKLALAFGL++T+ G TIRIVKNLR+C D
Sbjct: 502 RCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICED 561

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CHSAIK IS+  +REIIVRD+ RFHHFK GSCSCLDYW
Sbjct: 562 CHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  858 bits (2218), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/579 (69%), Positives = 481/579 (83%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           K ++  S  YEA++ AGP L+ LQQ HAHL+V G  RSR++LTKLL+L C AG I Y +R
Sbjct: 4   KERKIKSAEYEAVVSAGPHLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRR 63

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +  PDSFLFN+LI  +SK  FS D++LFYRRM++S I PS YTF++VIK+CA LS+
Sbjct: 64  LFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSL 123

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L +G  VH HVFVSGY SD  VQAAL+ FYAKS    VARKVFD MP +S+VAWNSMISG
Sbjct: 124 LCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISG 183

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           YEQNG A EA+ +FN MR+  V PDS T V VL+AC+QLG +D G W+H+ IVG G+ +N
Sbjct: 184 YEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMN 243

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           VVLATSL+NM++RCG+V +AR +F  M E NV+ WTAMISGYGMHGYG EA+E+FHRM+A
Sbjct: 244 VVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKA 303

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV PN+VTFVAVLSACAHAGL+ EG  VFASM+QEYG++PGVEHHVCMVD+FGR GLLN
Sbjct: 304 RGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLN 363

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EAY+FVK +  ++  PAVWTAMLGACKMHKNFDLGVEVAE+L++ EPENPGHYV+LSN+Y
Sbjct: 364 EAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMY 423

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           ALAGRMDRVE VRN+MIQ+GLKK VGYST++VD ++YLFSMGDKSHP TNEIY +LDEL+
Sbjct: 424 ALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELI 483

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            RC++AGY P  ESAMHELE EEREY+LRYHSEKLA+AFGLM+T  G+T+RIVKNLR+C 
Sbjct: 484 WRCKDAGYAPVPESAMHELEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICE 543

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSAIKFIS   NREIIVRD+LRFHHF+ GSCSC DYW
Sbjct: 544 DCHSAIKFISAVMNREIIVRDKLRFHHFREGSCSCSDYW 582


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/579 (72%), Positives = 488/579 (84%), Gaps = 1/579 (0%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           +K PHSPAY  +L+AGPRL  L QVHAH+IV+GYGRSRS+LTKLL+L C AG I+Y ++I
Sbjct: 7   HKLPHSPAYNFLLQAGPRLYLLHQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQI 66

Query: 63  FFCIPSPDSFLFNTLIIRNSKA-NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           F  +P+PDSFLF +LI   SK+ NFS  SL FY RM++SN+SPSNYTF++VIKSCA LS 
Sbjct: 67  FLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSA 126

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  GR VH HV V G+  D++VQAALV  Y K  ++  ARKVFD++ ++S+VAWNSMISG
Sbjct: 127 LKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISG 186

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           YEQNGFAKEAIGLF+ M++ GV PDS T V VL+ACA LG   LG WVHE+IVG GLD+N
Sbjct: 187 YEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLN 246

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           VVL TSLINMY RCGNVSKARE+FD M E NV+AWTAMISGYG +GYG++AVELFH MR 
Sbjct: 247 VVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRR 306

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
           +G+ PN++TFVAVLSACAHAGLV EG R+FAS+R+EY L+PGVEH+VC+VD+ GRAGLL+
Sbjct: 307 NGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLD 366

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EAY F+K+ I E PAPA+ TAMLGACKMHKNFDLG +VAEHLL+ EPENP HYV+LSNIY
Sbjct: 367 EAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIY 426

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           ALAGRMD+VE+VRN MI+K LKK VGYSTVEVDQK YLFSMGDKSH  TN IY YLDELM
Sbjct: 427 ALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELM 486

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            +C EAGYVP S+S MHELEEEEREY+LRYHSEKLA+AFGL++TS G  IRIVKNLRMC 
Sbjct: 487 WKCSEAGYVPVSDSVMHELEEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCE 546

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSAIKFIS  ++REIIVRD+LRFHHFK GSCSCLDYW
Sbjct: 547 DCHSAIKFISAISSREIIVRDKLRFHHFKVGSCSCLDYW 585


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/573 (70%), Positives = 483/573 (84%), Gaps = 1/573 (0%)

Query: 9   PAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLV-CDAGFITYAQRIFFCIP 67
           P Y +I+ AGPRLKPLQQ+HA +I+ G GR+RS++TKLLS     A  I+Y +R+FF IP
Sbjct: 20  PIYHSIILAGPRLKPLQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIP 79

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
            PD+FLF++LI   SK +F  +SLL YRRM+++NIS SNYTFSAVIKS A L+  ++G  
Sbjct: 80  KPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGET 139

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +HCHV++ GY  D +VQAALV+FYAKS +V +ARKVFD+MP+K+VVAWNSMISGYEQNGF
Sbjct: 140 IHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGF 199

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            KEA+ LF LM+D GV PDS+T V +L+ACAQ+G I LG WVHE+I     D+NVVL T+
Sbjct: 200 GKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTA 259

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L+NMY+RCGNVSKARE+FD M E N++AWTAMISGYGMHG+G++A+ELF+ M   G RPN
Sbjct: 260 LMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPN 319

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           NVTFVAVLSACAHAGLV EG ++F +M+QEYGL+P VEH VCMVD+ GRAG LNEAY+F+
Sbjct: 320 NVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFI 379

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           K+   ++PAPAVWTAMLGACKMHKNFDLGVEVAEHLLS+EPENPGHYVMLSNIYALAGRM
Sbjct: 380 KNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRM 439

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           DRVE +RNIMI+  LKK VGYST++VD K YLFSMGDKSHP TN+IY YLDELM RCREA
Sbjct: 440 DRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREA 499

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           GY+P SES MHE+EEEEREY+LRYHSEKLA+AFGL++T  G+ IRIVKNLRMC DCH+AI
Sbjct: 500 GYIPASESVMHEVEEEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAI 559

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           K+IS+  NREI VRDRLRFHHFK GSCSC DYW
Sbjct: 560 KYISIIANREINVRDRLRFHHFKDGSCSCQDYW 592


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  848 bits (2191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/579 (70%), Positives = 483/579 (83%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           K ++  S  YEA++ AGP L+ LQQ HAHL+V G  RSR++LTKLL+L C AG I Y +R
Sbjct: 4   KERRRKSAEYEAVVSAGPHLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRR 63

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +  PDSFLFN+LI  +S   FS D++ FYRRM+ S I PS YTF++VIK+CA LS+
Sbjct: 64  LFRSVSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSL 123

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L LG  VH HVFVSGY S+  VQAALV FYAKS    VARKVFD MP +S++AWNSMISG
Sbjct: 124 LRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISG 183

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           YEQNG A EA+ +FN MR+ G  PDS T V VL+AC+QLG +DLG W+HE IVG G+ +N
Sbjct: 184 YEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMN 243

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           VVLATSL+NM++RCG+V +AR +FD M+E NV++WTAMISGYGMHGYG EA+E+FHRM+A
Sbjct: 244 VVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKA 303

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV PN VT+VAVLSACAHAGL+ EG  VFASM+QEYG++PGVEHHVCMVD+FGR GLLN
Sbjct: 304 CGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLN 363

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EAY+FV+ +  E+  PAVWTAMLGACKMHKNFDLGVEVAE+L+S EPENPGHYV+LSN+Y
Sbjct: 364 EAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMY 423

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           ALAGRMDRVE VRN+MIQ+GLKK VGYST++V+ ++YLFSMGDKSHP TNEIY YLDELM
Sbjct: 424 ALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELM 483

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            RC++AGY P  ESAMHELEEEEREY+LRYHSEKLA+AFGLM+T  G+T+RIVKNLR+C 
Sbjct: 484 WRCKDAGYAPAPESAMHELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICE 543

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSAIKFISV  NREIIVRD+LRFHHF+ GSCSC DYW
Sbjct: 544 DCHSAIKFISVVMNREIIVRDKLRFHHFREGSCSCSDYW 582


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  833 bits (2152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/579 (70%), Positives = 482/579 (83%), Gaps = 2/579 (0%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           +K PHSPAY  +L+AGPRLK L QVHAH+IV+GYG SR +LTKLL+L C AG I+Y ++I
Sbjct: 7   HKHPHSPAYNLLLQAGPRLKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQI 66

Query: 63  FFCIPSPDSFLFNTLIIRNSK-ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           F  +P+PDSFLF +LI   SK  NFS  SL FY RM++SN++PSNYTF++VIKSCA L  
Sbjct: 67  FLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVA 126

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  GR +H HV V+G+ SD++VQ AL++FY K   +  ARKVFD+M D+SVV WNSMISG
Sbjct: 127 LRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISG 186

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           YEQNGFAKEAI LF+ M++ GV P+S T V VL+ACA LG   LG WVHE+ VG GLD+N
Sbjct: 187 YEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLN 246

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           VVL TSLINMY RCGNVSKARE+FD M E NV+AWTAMISGYG +GYG++AVELFH MR 
Sbjct: 247 VVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRR 306

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
           +G+ PN++TFVAVLSACAHAGLV EG RVF SMR+EY L+P VEHHVC+VD+ GRAGLL+
Sbjct: 307 NGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLD 366

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EAY F+K+ I E+PAPA+WTAMLGACKMHKNF LG +VAEH L+ EP NP HYV+LSNIY
Sbjct: 367 EAYNFIKE-IHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIY 425

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           ALAGRMD+VE+VR+ MI+K LKK VGYST+++D+K YLFSMGDKSH  TNEIY YLD+LM
Sbjct: 426 ALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLM 485

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            +CREAGYV  S+S MHELEEEEREY+L YHSEKLA+AFGL++TS G  IRIVKNLRMC 
Sbjct: 486 RKCREAGYVTVSDSVMHELEEEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCE 545

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSAIK+ISV +NREIIVRD+LRFHHFK GSCSCLDYW
Sbjct: 546 DCHSAIKYISVISNREIIVRDKLRFHHFKNGSCSCLDYW 584


>gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33760-like [Vitis vinifera]
          Length = 561

 Score =  787 bits (2032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/574 (67%), Positives = 458/574 (79%), Gaps = 30/574 (5%)

Query: 7   HSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           HSPAY+ +L AGPRLKPLQQVHAHLIV+G  RSR++LTKLL+L C AG I Y +++FF I
Sbjct: 18  HSPAYQVLLHAGPRLKPLQQVHAHLIVSGSYRSRALLTKLLTLACTAGSILYTRQLFFSI 77

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
            +PDSFLFN +I  +SK  FS D++LFYRRM+  +I  SNYTF+AVIK+CA +S L +GR
Sbjct: 78  TNPDSFLFNAIIKASSKFGFSCDAILFYRRMVADSIPQSNYTFTAVIKACADISALRIGR 137

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H HV V GYDSD  VQAAL+ FYAKS +V  A+KVFDRMP+++++AWNSMISGY+QNG
Sbjct: 138 PIHSHVLVCGYDSDSFVQAALIAFYAKSGDVGEAKKVFDRMPERTIIAWNSMISGYDQNG 197

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
           F+KEA+GLF  MR+ GV  DS T V VL+AC+Q G +DLG WVH++IV    DVNVVL T
Sbjct: 198 FSKEAVGLFYRMRELGVEFDSATFVSVLSACSQSGALDLGCWVHDYIVNNSFDVNVVLGT 257

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           SLINMY RCGNVSKARE+FD M+E NV+AWTAMISGYGMHGYG EA+ELF  MR HG   
Sbjct: 258 SLINMYTRCGNVSKAREVFDEMNERNVVAWTAMISGYGMHGYGREAIELFRLMRIHG--- 314

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
                                      MRQ+YGL+P VEHHVCMVD+ GRAG LNEA+++
Sbjct: 315 ---------------------------MRQDYGLVPRVEHHVCMVDMLGRAGFLNEAFQY 347

Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
           +KD+   + APA+WTAMLGACKMHKN DLGV+VAEHLL+ EPENP HYV+LSN+YALAGR
Sbjct: 348 IKDLKQGEQAPALWTAMLGACKMHKNLDLGVQVAEHLLAAEPENPSHYVLLSNVYALAGR 407

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE 486
           M+RVE+VRN+MI+KGLKK VGYS +EV QK+YLFSMGD+SHP T EIY+YLDELM R +E
Sbjct: 408 MERVEMVRNMMIRKGLKKQVGYSIIEVGQKSYLFSMGDRSHPETTEIYKYLDELMLRSKE 467

Query: 487 AGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSA 546
           AGYVP  E  MHELEEEEREY+LRYHSEKLA+AFGLM+TS GMTIRIVKNLRMC DCHSA
Sbjct: 468 AGYVPAPELVMHELEEEEREYALRYHSEKLAIAFGLMKTSHGMTIRIVKNLRMCEDCHSA 527

Query: 547 IKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           IKFIS   NREIIVRD+LRFHHFK G CSC DYW
Sbjct: 528 IKFISNIANREIIVRDKLRFHHFKNGLCSCQDYW 561


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/577 (62%), Positives = 457/577 (79%), Gaps = 4/577 (0%)

Query: 7   HSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           +S AYEAI++AGPR+K LQQVHAHLIV  YGRSRS+LTKL++L C A  I Y   +F  +
Sbjct: 8   NSAAYEAIVRAGPRVKQLQQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLLFLSV 67

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P PD FLFN++I   SK       + +YRRM+ SN+SPSNYTF++VIKSCA LS L +G+
Sbjct: 68  PLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGK 127

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            VHCH  VSG+  D +VQAALV FY+K  +++ AR+VFDRMP+KSVVAWNS++SG+EQNG
Sbjct: 128 GVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNG 187

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
            A++AI +F  MR+ G  PDS T V +L+ACAQ G I LG WVH++IV +GLDVNV L T
Sbjct: 188 LAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGT 247

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVR 305
           +LIN+Y+RCG+V KARE+FD M E NV AWTAMIS YG HGYG +AV+LF++M    G  
Sbjct: 248 ALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSI 307

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           PNNVTFVAVLSACAHAGLV++G  V+  M + Y L+PGVEHHVC+VD+ GRAG L+EAY+
Sbjct: 308 PNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYR 367

Query: 366 FVK--DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
           F++  D  G   APA+WTAMLGACKMH+N+DLGVE+A+ L+++EPENPGH+VMLSNIYAL
Sbjct: 368 FIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIYAL 427

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
           +G+ D V  +R+ M++  L+K VGYS +EV+ K YLFSMGD+SH  T EIY+YL+ L+ R
Sbjct: 428 SGKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISR 487

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
           C+E GY P SE  MH++EEEE+E++LRYHSEKLA+AFGL++T     I +VKNLR+C DC
Sbjct: 488 CKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVDS-AITVVKNLRICEDC 546

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           HSA K+IS+ +NR+IIVRD+LRFHHF+ GSCSCLDYW
Sbjct: 547 HSAFKYISIVSNRQIIVRDKLRFHHFQNGSCSCLDYW 583


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/577 (62%), Positives = 457/577 (79%), Gaps = 4/577 (0%)

Query: 7   HSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           +S AYEAI++AGPR+K LQQVHAHLIV GYGRSRS+LTKL++L C A  I Y   +F  +
Sbjct: 8   NSAAYEAIVRAGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSV 67

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P PD FLFN++I   SK       + +YRRM+ SN+SPSNYTF++VIKSCA LS L +G+
Sbjct: 68  PLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGK 127

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            VHCH  VSG+  D +VQAALV FY+K  +++ AR+VFDRMP+KS+VAWNS++SG+EQNG
Sbjct: 128 GVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNG 187

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
            A EAI +F  MR+ G  PDS T V +L+ACAQ G + LG WVH++I+ +GLD+NV L T
Sbjct: 188 LADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGT 247

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVR 305
           +LIN+Y+RCG+V KARE+FD M E NV AWTAMIS YG HGYG +AVELF++M    G  
Sbjct: 248 ALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPI 307

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           PNNVTFVAVLSACAHAGLV+EG  V+  M + Y L+PGVEHHVCMVD+ GRAG L+EAYK
Sbjct: 308 PNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYK 367

Query: 366 FVK--DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
           F+   D  G+  APA+WTAMLGACKMH+N+DLGVE+A+ L+++EP+NPGH+VMLSNIYAL
Sbjct: 368 FIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYAL 427

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
           +G+ D V  +R+ M++  L+K VGYS +EV+ K Y+FSMGD+SH  T EIY+YL+ L+ R
Sbjct: 428 SGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISR 487

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
           C+E GY P SE  MH++EEEE+E++LRYHSEKLA+AFGL++T   + I IVKNLR+C DC
Sbjct: 488 CKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDC 546

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           HSA K+IS+ +NR+I VRD+LRFHHF+ GSCSCLDYW
Sbjct: 547 HSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/575 (57%), Positives = 421/575 (73%), Gaps = 3/575 (0%)

Query: 8   SPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           SP Y ++L AG RL PL+Q HA L+V+G+  S  + TKL +L   AG  +YA  +    P
Sbjct: 10  SPEYNSLLLAGARLGPLKQAHARLVVSGHAHSLPLTTKLATLAVAAGAASYAGLLAASHP 69

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
           SPDSFLF +L    ++      +L FYRR++ + +  S++ F++V K+CA LS L  G  
Sbjct: 70  SPDSFLFCSLTRAAARRGLPAAALAFYRRLLAAALPFSSFAFTSVAKACADLSALRAGMG 129

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           VH H  + G+ SD  VQ ALV  Y+K   +DVARK+FD + D+SVVAWN+MISGYEQNG 
Sbjct: 130 VHAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQNGL 189

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
           A  AI ++  MR  G  PDS T V  L+ACAQ G +DLG  V   IV + +++NVVL  +
Sbjct: 190 AGRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVLGAA 249

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L+NMYARCG V+KARE FDM+ E NV+ WT+MI+GYGMHG+G EAV+LF  MR  G  PN
Sbjct: 250 LVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPN 309

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           +VTFVAVLSACAHAGLV +G   FASM+  YGL+P  EH+  MVD++GRAGLL++A +F+
Sbjct: 310 DVTFVAVLSACAHAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFI 369

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
            D I  +P P VWTAMLGACKMHKNF LGVEVAE L+++EPENP H V+LSNIYAL+G+M
Sbjct: 370 HDSIPGEPGPEVWTAMLGACKMHKNFSLGVEVAERLIALEPENPSHRVLLSNIYALSGKM 429

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           + VE VRN MI++ LKK +GYS +E+    ++F MG+KSHP T EIYQYL++L+ R  +A
Sbjct: 430 NHVEKVRNTMIKRRLKKPIGYSLIEIGGVAHVFRMGEKSHPKTPEIYQYLEKLIHRITDA 489

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT--IRIVKNLRMCVDCHS 545
           GY+PE++S +HELEEEERE++LRYH EKLA+AFGLM TS G T  IRI+KNLR+C DCH 
Sbjct: 490 GYMPETDSVLHELEEEEREFALRYHGEKLAVAFGLMMTS-GCTAPIRIIKNLRICGDCHL 548

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           AIK++S   NREIIVRD  RFHHFK G CSC +YW
Sbjct: 549 AIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 583


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/578 (56%), Positives = 429/578 (74%), Gaps = 3/578 (0%)

Query: 6   PH--SPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF 63
           PH  SP Y ++L AGPRL PL+Q HA L+V+G+G S  ++TKL +L   AG  +YA+ + 
Sbjct: 3   PHRRSPEYNSLLLAGPRLGPLKQAHARLVVSGHGDSLPLITKLATLAVAAGAASYARLLA 62

Query: 64  FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123
              P+PDSFLF +L    ++      +L FYR ++ + +  S++ F++V K+CA LS + 
Sbjct: 63  ASHPAPDSFLFCSLTRATARRGLPAAALAFYRCLLAAALPFSSFAFTSVAKACADLSAIR 122

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
            G  +H H  + G  S+  VQ +LV  Y+K   +DVARK+FD + DKSVVAWN+MISGYE
Sbjct: 123 AGMGIHAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYE 182

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG A  AI ++  M+  G  PDS T V  L+ACAQ G +DLGR V + IV + +++NVV
Sbjct: 183 QNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIVSERMEMNVV 242

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           L  +L+NMYARCG V+KARE F+M+ E NV+ WT+MI+GYGMHG+G EAV+LF+ MR  G
Sbjct: 243 LGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQQG 302

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
             PN+VTFVAVLSACAHAGLV EG   FASM+  YGL+P VEH+  MVD++GRAGLL++A
Sbjct: 303 PPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYCSMVDMYGRAGLLDDA 362

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
            +F+ D I  +P P VWTAMLGACKMHK+F+LGVEVAE L+++EPE+P H V+LSN+YAL
Sbjct: 363 MRFIHDSIPGEPGPEVWTAMLGACKMHKDFNLGVEVAERLIALEPESPSHRVLLSNLYAL 422

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
           +G+M+ VE VR+ MI++ LKK +GYS +E+    +LF MG+KSHP T+EIYQYL++L+ +
Sbjct: 423 SGKMNHVEKVRDTMIKRRLKKPIGYSLIEIAGVAHLFRMGEKSHPKTSEIYQYLEKLIEK 482

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT-IRIVKNLRMCVD 542
             + GYVP+++S +HELEEEERE++LRYH EKLA+AFGLM TS   T IRI+KNLR+C D
Sbjct: 483 ITDVGYVPKTDSVLHELEEEEREFALRYHGEKLAVAFGLMMTSGCTTPIRIIKNLRICED 542

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH AIK++S   NREIIVRD  RFHHFK G CSC +YW
Sbjct: 543 CHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 580


>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
          Length = 584

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 326/575 (56%), Positives = 427/575 (74%), Gaps = 1/575 (0%)

Query: 7   HSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           HSP ++++L AGPRL PL+Q HA L+VAG+G S  ++TKL +L   AG   YA  +    
Sbjct: 10  HSPEFDSLLVAGPRLGPLKQAHARLVVAGHGGSLPLVTKLATLAVAAGAAPYAHLLAASH 69

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P+ DSFL ++L    +      +++ FY R++ + +  S++ F+A  K+CA LS L  G 
Sbjct: 70  PACDSFLLSSLARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGM 129

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
           AVH H  + G+ SD  VQ ALV  Y+K   + VARK+FD + D+SVVAWN+MISGYEQNG
Sbjct: 130 AVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNG 189

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
            A+ AI ++  M+   V PDS T V  L+ACAQ G +DLGR V   IV   +DV+V L +
Sbjct: 190 LAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVFLGS 249

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           +L+NMYARCG VSKAR+ FD + E NV+ WT+MI+GYGMHG+G EA++LFH MR  G  P
Sbjct: 250 ALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTP 309

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           N+VTFVAVL+ACAHAGLV EG   F SM++ YGL+P  EH+  MVD++GRAGLL++A +F
Sbjct: 310 NDVTFVAVLAACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQF 369

Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
           ++D I  +P P VWTAMLGACKMHKNF+LGVEVAE L+++EPENP H V+LSNIYAL+G+
Sbjct: 370 IRDSIPGEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALSGK 429

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE 486
           M+ VE VRN+MI++ LKK +GYS +E+   ++LF MG+KSH  T EIYQYL+EL+ R  +
Sbjct: 430 MNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYQYLEELIHRISD 489

Query: 487 AGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT-IRIVKNLRMCVDCHS 545
           AGYVPE++S +HELEEEERE +LRYHSEKLA+A+GLM +S   T IR++KNLR+C DCH 
Sbjct: 490 AGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTTPIRVIKNLRICGDCHL 549

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           AIKF+S   +REIIVRD+ RFHHFK G CSCL+YW
Sbjct: 550 AIKFMSSVESREIIVRDKHRFHHFKDGKCSCLEYW 584


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 323/581 (55%), Positives = 424/581 (72%), Gaps = 2/581 (0%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           M +  P SP + ++L AGPR  PL+Q HA L+V G+GRS  ++TKL +L   AG   YA 
Sbjct: 1   MDSHHP-SPEHSSLLLAGPRGGPLKQAHARLVVTGHGRSLPLITKLATLAVAAGAAPYAH 59

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
            +    P+PDSFLF++L    +       ++ FYR ++ + +  S++TF+AV K+CA LS
Sbjct: 60  LLATSHPAPDSFLFSSLTRTAAHHGLPVAAIAFYRGLLSAALPFSSFTFTAVAKACADLS 119

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L  G A+H H  + G+ SD  V  ALV  Y+K   + VARK+FD + D+SVVAWN+MIS
Sbjct: 120 ALRTGAAIHAHSILLGFGSDRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMIS 179

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GYEQNG A+  IG++  M+     PDS T V  L+ACAQ G +DLGR V   +V + +D+
Sbjct: 180 GYEQNGLAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDLGREVERRVVSERMDI 239

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +V L ++L+NMYARCG V KAR  FD + E NV+ WT+MI+GYGMHG+G EA++LFH MR
Sbjct: 240 SVFLGSALVNMYARCGVVDKARRWFDALQERNVVTWTSMIAGYGMHGHGREAIKLFHLMR 299

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G  PN+VTFVAVLSACAHAGLV EG   FA M++ YGL+P VEH+  MVD+FGRAGLL
Sbjct: 300 CEGPPPNHVTFVAVLSACAHAGLVMEGRDAFACMKRVYGLVPRVEHYCSMVDMFGRAGLL 359

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
           +EA +F+ D +  +P P VWTA+LGACKMHKNF+LGVEVAE L+++EPENP ++V+LSNI
Sbjct: 360 DEAMQFISDYMPGEPGPEVWTAVLGACKMHKNFNLGVEVAERLIALEPENPSYHVLLSNI 419

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YAL+G+M  VE VRN MI++ LKK +G+S +E+   ++LF MG+KSHP T EIY YL+EL
Sbjct: 420 YALSGKMHHVEKVRNTMIKRRLKKQIGFSLIELGGTSHLFRMGEKSHPQTTEIYHYLEEL 479

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT-IRIVKNLRM 539
           + R   AGY+PE+ES +HELEEEERE +LRYHSEKLA+A+GLM +    T IR++KNLR+
Sbjct: 480 IHRITAAGYMPETESVLHELEEEEREGALRYHSEKLAVAYGLMMSVGSTTPIRVIKNLRI 539

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCH AIKF+S   NREI+VRD+ RFHHFK G CSCL+YW
Sbjct: 540 CGDCHLAIKFMSAVENREIVVRDKHRFHHFKDGKCSCLEYW 580


>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
          Length = 584

 Score =  629 bits (1623), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 325/575 (56%), Positives = 426/575 (74%), Gaps = 1/575 (0%)

Query: 7   HSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           HSP ++++L AGPRL PL+Q HA L+VAG+G S  ++TKL +L   AG   YA  +    
Sbjct: 10  HSPEFDSLLVAGPRLGPLKQAHARLVVAGHGGSLPLVTKLATLAVAAGAAPYAHLLAASH 69

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P+ DSFL ++L    +      +++ FY R++ + +  S++ F+A  K+CA LS L  G 
Sbjct: 70  PACDSFLLSSLARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGM 129

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
           AVH H  + G+ SD  VQ ALV  Y+K   + VARK+FD + D+SVVAWN+MISGYEQNG
Sbjct: 130 AVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNG 189

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
            A+ AI ++  M+   V PDS T V  L+ACAQ G +DLGR V   IV   +DV+V L +
Sbjct: 190 LAERAIEVYREMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLGS 249

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           +L+NMYARCG VSKAR+ FD + E NV+ WT+MI+GYGMHG+G EA++LFH MR  G  P
Sbjct: 250 ALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTP 309

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           N+VTFVAVL+ACAHAGLV EG   F SM++ YGL+P  EH+  MVD++GRAGLL++A +F
Sbjct: 310 NDVTFVAVLAACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQF 369

Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
           + D I E+P P VWTAMLGACKMHKNF+LGVEVAE L+++EPENP H V+LSNIYAL+G+
Sbjct: 370 ICDSIPEEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALSGK 429

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE 486
           M+ VE VRN+MI++ LKK +GYS +E+   ++LF MG+KSH  T EIY+YL+EL+ R  +
Sbjct: 430 MNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYRYLEELIHRISD 489

Query: 487 AGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT-IRIVKNLRMCVDCHS 545
           AGYVPE++S +HELEEEERE +LRYHSEKLA+A+GLM +S     IR++KNLR+C DCH 
Sbjct: 490 AGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTAPIRVIKNLRICGDCHL 549

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           AIKF+S   +REIIVRD+ RFHHFK G CSCL+YW
Sbjct: 550 AIKFMSSVESREIIVRDKHRFHHFKDGKCSCLEYW 584


>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Brachypodium distachyon]
          Length = 580

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 316/574 (55%), Positives = 415/574 (72%), Gaps = 1/574 (0%)

Query: 8   SPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           SP Y ++L AGPR+ PL+Q HA L+V G+ R   ++TKL +L   AG   YA  +    P
Sbjct: 7   SPEYSSLLLAGPRIGPLKQAHARLVVTGHSRCLPLITKLANLAVAAGAAPYAHLVATSHP 66

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
           + DSFLF++L    +       +L FYR ++ + +  S++ F+AV K+CA LS L  G  
Sbjct: 67  ASDSFLFSSLARAATHQGLPLAALAFYRCLLSAALPFSSFAFTAVAKACADLSALRTGMT 126

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           VH H  + G+ SD  V  ALV  Y+K   + VARK+FD + DK+VVAWN+MISGYEQNG 
Sbjct: 127 VHAHSILLGFGSDRFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQNGL 186

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
           A++ I ++  M+     PDS T V  L+ACAQ G +DLGR V   IV + +D++V L ++
Sbjct: 187 AEQGIEVYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREVERRIVSERMDISVFLGSA 246

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L+NMYARCG V KAR+ FD++ E NV+ WT+MI+GYGMHG+G EA++L+H MR  G  PN
Sbjct: 247 LVNMYARCGVVDKARQWFDVLQERNVVTWTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPN 306

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           +VTFVAVLSACAHAGL+ EG   FA M++ YGL P VEH+  MVD++GRAG L EA +F+
Sbjct: 307 DVTFVAVLSACAHAGLITEGRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEAMQFI 366

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           +D +   P P VWTA+LGACKMHKNF LGVEVAE L+ +EPENP ++V+LSNIYAL+G+M
Sbjct: 367 RDSMPGDPGPEVWTAILGACKMHKNFSLGVEVAERLIRLEPENPSYHVLLSNIYALSGKM 426

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
             VE VRN MI++ LKK +GYS +E+   ++LF MG+KSH  T EIYQYL+EL+ R   A
Sbjct: 427 YHVEKVRNTMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQKTREIYQYLEELVHRISAA 486

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT-IRIVKNLRMCVDCHSA 546
           GY+PE+ES +HELEEEERE +LRYHSEKLA+A+GLM ++   T +R++KNLR+C DCH A
Sbjct: 487 GYMPETESVLHELEEEEREGALRYHSEKLAVAYGLMMSAGSTTPLRVIKNLRICSDCHLA 546

Query: 547 IKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           IKF+S   NREIIVRD+ RFHHFK G CSCL+YW
Sbjct: 547 IKFMSAVENREIIVRDKHRFHHFKDGKCSCLEYW 580


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/579 (43%), Positives = 378/579 (65%), Gaps = 4/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+S    +++     L  L+Q   +H + I +G      ++  L+++    G +  A +
Sbjct: 218 KPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHK 277

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  D   +N +I   S  +   ++L F+ RM V  I P++ T  +V+ +CAHL  
Sbjct: 278 LFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFA 337

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +H +   SG++S+  V  ALVN YAK  NV+ A K+F+RMP K+VVAWN++ISG
Sbjct: 338 LEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISG 397

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q+G   EA+ LF  M+  G+ PDS   V VL ACA    ++ G+ +H + +  G + N
Sbjct: 398 YSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESN 457

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           VV+ T L+++YA+CGNV+ A+++F+ M E +V++WT MI  YG+HG+G +A+ LF +M+ 
Sbjct: 458 VVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQE 517

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G + +++ F A+L+AC+HAGLV +G + F  M+ +YGL P +EH+ C+VDL GRAG L+
Sbjct: 518 TGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLD 577

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA   +K++  E P   VW A+LGAC++H N +LG + A+HL  ++P+N G+YV+LSNIY
Sbjct: 578 EANGIIKNMSLE-PDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIY 636

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A A R + V  +R +M +KG+KK  G S V V +    F +GD++HP + +IY  L+ L 
Sbjct: 637 AEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILY 696

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            + R+AGYVP +  A+ ++EEE +E  L  HSEKLA++FG++ TSPG+ IRI+KNLR+C 
Sbjct: 697 EQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCS 756

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+A KFIS    REIIVRD  RFHH K G CSC DYW
Sbjct: 757 DCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 221/397 (55%), Gaps = 24/397 (6%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    + +++KA      LQ   +VH  +I  G+     + T L S+    G +  A+++
Sbjct: 118 PDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQV 177

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P  D   +N +I   S+     ++L  +  M V+ I P++ T  +V+  CAHL  L
Sbjct: 178 FDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLAL 237

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+ +HC+   SG +SD+ V   LVN YAK  NV+ A K+F+RMP + V +WN++I GY
Sbjct: 238 EQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGY 297

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
             N    EA+  FN M+  G+ P+S T V VL ACA L  ++ G+ +H + +  G + N 
Sbjct: 298 SLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESND 357

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           V+  +L+NMYA+CGNV+ A ++F+ M + NV+AW A+ISGY  HG+  EA+ LF  M+A 
Sbjct: 358 VVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQ 417

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC----MVDLFGRAG 358
           G++P++   V+VL ACAH   +++G ++       Y +  G E +V     +VD++ + G
Sbjct: 418 GIKPDSFAIVSVLPACAHFLALEQGKQIHG-----YTIRSGFESNVVVGTGLVDIYAKCG 472

Query: 359 LLNEAYKFV-----KDVIGEKPAPAVWTAMLGACKMH 390
            +N A K       +DV+        WT M+ A  +H
Sbjct: 473 NVNTAQKLFERMPEQDVVS-------WTTMILAYGIH 502



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 190/325 (58%), Gaps = 11/325 (3%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           ++ ++   II   K  F   +L  Y +M  + I+P    F +VIK+C   S L  GR VH
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
             +   G++SD+ V  AL + Y K  +++ AR+VFDRMP + VV+WN++I+GY QNG   
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           EA+ LF+ M+  G+ P+S+T V V+  CA L  ++ G+ +H + +  G++ +V++   L+
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLV 263

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           NMYA+CGNV+ A ++F+ M   +V +W A+I GY ++    EA+  F+RM+  G++PN++
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSI 323

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH----VCMVDLFGRAGLLNEAYK 365
           T V+VL ACAH   +++G ++       Y +  G E +      +V+++ + G +N AYK
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHG-----YAIRSGFESNDVVGNALVNMYAKCGNVNSAYK 378

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMH 390
             + +   K     W A++     H
Sbjct: 379 LFERM--PKKNVVAWNAIISGYSQH 401


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/562 (42%), Positives = 364/562 (64%), Gaps = 11/562 (1%)

Query: 24   LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
            L++ HA +   G      +LTK   +      I  A  +F  IP+P SFL+N +I     
Sbjct: 736  LKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMI----- 790

Query: 84   ANFSTD-----SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
              F+TD     SL  Y +M+   + P  + F   +KSCA LS L  G+ +H H+   G  
Sbjct: 791  RGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCS 850

Query: 139  SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
            +DL V AALV+ YAK  +++ AR VFD+M  + +V+W SMISGY  NG+  E +G F+LM
Sbjct: 851  NDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLM 910

Query: 199  RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
            R  GV P+  + + VL AC  LG +  G W H +++  G + ++++AT++++MY++CG++
Sbjct: 911  RSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSL 970

Query: 259  SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
              AR +FD  +  +++ W+AMI+ YG+HG+G +A++LF +M   GVRP++VTF  VLSAC
Sbjct: 971  DLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSAC 1030

Query: 319  AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
            +H+GL++EG   F  M +E+ +   + ++ CMVDL GRAG L+EA   ++++  E P  +
Sbjct: 1031 SHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVE-PDAS 1089

Query: 379  VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
            +W ++LGAC++H N DL  ++A+HL  ++P + G++V+LSNIYA   R + VE VR +M 
Sbjct: 1090 IWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMA 1149

Query: 439  QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
            ++G  K  G+S VE D + + F +GD+SHP   ++Y  L+EL    +  GYVP ++  +H
Sbjct: 1150 RRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLH 1209

Query: 499  ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
            ++EEE +E +L YHSE+LA+AFGL+ TSPG T+RI KNLR+C DCH+AIK IS   NR I
Sbjct: 1210 DIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVI 1269

Query: 559  IVRDRLRFHHFKRGSCSCLDYW 580
            +VRD  RFH F+ G CSC DYW
Sbjct: 1270 LVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 171/477 (35%), Positives = 279/477 (58%), Gaps = 8/477 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH  +I   +     ++  LL+L    G    A  +F  +P  D   ++T+I   +    
Sbjct: 228 VHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEA 287

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
           + ++L  +  MI     P++ T  + +++CA    L  G+ +H      G++ D  V  A
Sbjct: 288 ANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTA 347

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ Y K +  D A  +F R+P K VV+W +++SGY QNG A +++G+F  M   G+ PD
Sbjct: 348 LIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPD 407

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
           +   V +LAA ++LG       +H ++V  G + NV +  SLI +Y++CG++  A ++F 
Sbjct: 408 AVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFK 467

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQ 325
            M   +V+ W++MI+ YG+HG G EA+E+F +M +   VRPNNVTF+++LSAC+HAGLV+
Sbjct: 468 GMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVE 527

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA---VWTA 382
           EG ++F  M  +Y L P  EH   MVDL GR G L +A     D+I   P PA   VW A
Sbjct: 528 EGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAM----DIINRMPIPAGPHVWGA 583

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LGAC++H N ++G   A++L  ++P + G+Y++LSNIYA+ G+ D V  +R  + ++GL
Sbjct: 584 LLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGL 643

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           KK  G S VEV    + F   D+ HP++ +IY+ L +L  +  +  Y+P+ +  +H+
Sbjct: 644 KKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHD 700



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 202/380 (53%), Gaps = 4/380 (1%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN-I 102
           + L+ L    G +  A ++F     PD+ L+ +++    + N   ++L  + +M++ + +
Sbjct: 143 SALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCV 202

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
                T  +V+ +CA L  +  G  VH  V    +D DL +  +L+N YAK+    +A  
Sbjct: 203 VLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAAN 262

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           +F +MP+K V++W++MI+ Y  N  A EA+ LF+ M +    P+S T V  L ACA   +
Sbjct: 263 LFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRN 322

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           ++ G+ +H+  V +G +++  ++T+LI+MY +C    +A ++F  + + +V++W A++SG
Sbjct: 323 LEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSG 382

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
           Y  +G   +++ +F  M + G++P+ V  V +L+A +  G+ Q+   +   + +  G   
Sbjct: 383 YAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS-GFNS 441

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
            V     +++L+ + G L +A K  K +I       +W++M+ A  +H      +E+ + 
Sbjct: 442 NVFVGASLIELYSKCGSLGDAVKLFKGMIVRD--VVIWSSMIAAYGIHGRGGEALEIFDQ 499

Query: 403 LLSVEPENPGHYVMLSNIYA 422
           ++      P +   LS + A
Sbjct: 500 MVKNSTVRPNNVTFLSILSA 519



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 185/372 (49%), Gaps = 18/372 (4%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           + + Q+H+ +   G        TKL SL      +  A+++F   P P+  L+N+ +   
Sbjct: 18  RSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSY 77

Query: 82  SKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-- 138
            +     ++L  +  MI  +  +P N+T    +K+CA L +L LG+ +H   F    D  
Sbjct: 78  CREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHG--FAKKNDEI 135

Query: 139 -SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
            SD+ V +ALV  Y+K   +  A KVF+       V W SM++GY+QN   +EA+ LF+ 
Sbjct: 136 GSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQ 195

Query: 198 MRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
           M     V  D  T V V++ACAQL ++  G  VH  ++ +  D ++ L  SL+N+YA+ G
Sbjct: 196 MVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTG 255

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
               A  +F  M E +VI+W+ MI+ Y  +    EA+ LFH M      PN+VT V+ L 
Sbjct: 256 CEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQ 315

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHH----VCMVDLFGRAGLLNEAYKFVKDVIG 372
           ACA +  ++EG ++      +  +  G E        ++D++ +    +EA    + +  
Sbjct: 316 ACAVSRNLEEGKKI-----HKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRL-- 368

Query: 373 EKPAPAVWTAML 384
            K     W A+L
Sbjct: 369 PKKDVVSWVALL 380



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 165/330 (50%), Gaps = 8/330 (2%)

Query: 91   LLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNF 150
            L F++R+     + S Y           +S  +  +  H  +F  G   D  +       
Sbjct: 705  LQFWQRI---KATESKYKTIGSAPGTDTISCFSCLKKTHAKIFAYGLQYDSRILTKFAIM 761

Query: 151  YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
            Y   N +D A  VF+ +P+     WN MI G+  +G    ++ L++ M + G+ PD    
Sbjct: 762  YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAF 821

Query: 211  VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
               L +CA L D+  G+ +H+ +V  G   ++ +  +L++MYA+CG++  AR +FD M+ 
Sbjct: 822  PFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAV 881

Query: 271  LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
             ++++WT+MISGY  +GY +E +  F  MR+ GV PN V+ ++VL AC + G +++G   
Sbjct: 882  RDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEW- 940

Query: 331  FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            F S   + G    +     ++D++ + G L+ A     +  G+      W+AM+ +  +H
Sbjct: 941  FHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKD--LVCWSAMIASYGIH 998

Query: 391  KNFDLGVEVAEHLLS--VEPENPGHYVMLS 418
             +    +++ + ++   V P +     +LS
Sbjct: 999  GHGRKAIDLFDQMVKAGVRPSHVTFTCVLS 1028



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 133/276 (48%), Gaps = 13/276 (4%)

Query: 2   KNKQPHSPAYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           K  +P+S    + L+A      L+  +++H   +  G+    S+ T L+ +         
Sbjct: 301 KRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDE 360

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A  +F  +P  D   +  L+   ++   +  S+  +R M+   I P       ++ + + 
Sbjct: 361 AVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSE 420

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L I      +H +V  SG++S++ V A+L+  Y+K  ++  A K+F  M  + VV W+SM
Sbjct: 421 LGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSM 480

Query: 179 ISGYEQNGFAKEAIGLFNLM-RDFGVNPDSTTCVCVLAACAQLGDIDLG-----RWVHEF 232
           I+ Y  +G   EA+ +F+ M ++  V P++ T + +L+AC+  G ++ G     R VH++
Sbjct: 481 IAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDY 540

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
                L  +      ++++  R G + KA +I + M
Sbjct: 541 ----QLRPDSEHFGIMVDLLGRIGQLGKAMDIINRM 572


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/579 (41%), Positives = 358/579 (61%), Gaps = 3/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P S    ++L A   +        VHA     G  +   ++T L+SL    G +  A+ 
Sbjct: 218 RPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARH 277

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +  PD   +N LI   S       S+  ++ ++   + PS+ T  A+I   +    
Sbjct: 278 LFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGH 337

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
             L   +H HV  +G D++  V  AL   Y + N++D AR+ FD MP+K++ +WN+MISG
Sbjct: 338 EPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISG 397

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y QNG  + A+ LF  M+   V P+  T    L+ACAQLG + LG+WVH+ I  + L++N
Sbjct: 398 YAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELN 457

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V + T+LI+MY +CG++++AR IFD M   NV++W  MISGYG+HG G EA++L+  M  
Sbjct: 458 VYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMD 517

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             + P + TF++VL AC+H GLV+EG  VF SM  +YG+ PG+EH  CMVDL GRAG L 
Sbjct: 518 AHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLK 577

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA++ + +       P +W A+LGAC +HK+ DL    ++ L  +EPEN G+YV+LSN+Y
Sbjct: 578 EAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLY 637

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
               +     VVR     + L K  G + +E+  + ++F  GD++HP ++ IY YL++L 
Sbjct: 638 TSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLT 697

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            +  EAGY P++E+A++++EEEE+E+ ++ HSEKLA+AFGL+ T PG  IRI+KNLR+C+
Sbjct: 698 AKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNLRVCL 757

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+A K IS  T R I+VRD  RFHHF+ G CSC DYW
Sbjct: 758 DCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 216/439 (49%), Gaps = 20/439 (4%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           L+ +HA  + +G+     + + L  L         A+++F  +PSPD+ L+NTL+     
Sbjct: 142 LRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLL----- 196

Query: 84  ANFSTDSLL--FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           A  S    L  F R     ++ P + T ++V+ + A ++   +GR VH      G     
Sbjct: 197 AGLSGSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHE 256

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
           HV   L++ YAK  +++ AR +FDRM    +V +N++ISGY  NG    ++ LF  +   
Sbjct: 257 HVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGM 316

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G+ P S+T V ++   +  G   L   +H  +V  GLD N  ++T+L  +Y R  ++  A
Sbjct: 317 GLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSA 376

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           R  FD M E  + +W AMISGY  +G    AV LF +M+A  VRPN +T  + LSACA  
Sbjct: 377 RRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQL 436

Query: 322 GLVQEG---HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           G +  G   H++ A+ + E      V     ++D++ + G + EA + + D +  K   +
Sbjct: 437 GALSLGKWVHKIIANEKLEL----NVYVMTALIDMYVKCGSIAEA-RCIFDSMDNKNVVS 491

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA-GRM--DRVEVVRN 435
            W  M+    +H      +++ + ++     +P     LS +YA + G +  +   V R+
Sbjct: 492 -WNVMISGYGLHGQGAEALKLYKDMMDAH-LHPTSSTFLSVLYACSHGGLVKEGTTVFRS 549

Query: 436 IMIQKGLKKHVGYSTVEVD 454
           +    G+   + + T  VD
Sbjct: 550 MTSDYGITPGIEHCTCMVD 568



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 193/425 (45%), Gaps = 61/425 (14%)

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTF----SAVIKSC 116
           R++   P PD FL N+L+   S      D LLF         SP +++F    +++  SC
Sbjct: 79  RLYRAFPRPDRFLRNSLL--RSLPTLRAD-LLF--------PSPDSFSFAFAATSLASSC 127

Query: 117 AHLSILNLG------RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
           +   I          R +H     SG+ +D  V +AL   Y   +  + ARKVFD +P  
Sbjct: 128 SRGGISPPSAASAALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSP 187

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWV 229
             V WN++++G        EA+  F  M   G V PDSTT   VL A A++ +  +GR V
Sbjct: 188 DTVLWNTLLAGLS----GSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCV 243

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           H F    GL  +  + T LI++YA+CG++  AR +FD M   +++ + A+ISGY ++G  
Sbjct: 244 HAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMV 303

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAV-----------LSACAHAGLVQEGHRVFA------ 332
             +VELF  +   G+RP++ T VA+           L+ C HA +V+ G    A      
Sbjct: 304 GSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTAL 363

Query: 333 -----------SMRQEYGLLP--GVEHHVCMVDLFGRAGLLNEAYKFVKDV--IGEKPAP 377
                      S R+ +  +P   +E    M+  + + GL   A    + +  +  +P P
Sbjct: 364 TTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNP 423

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM--LSNIYALAGRMDRVEVVRN 435
              ++ L AC       LG  V   +++ E      YVM  L ++Y   G +     + +
Sbjct: 424 LTISSALSACAQLGALSLGKWV-HKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFD 482

Query: 436 IMIQK 440
            M  K
Sbjct: 483 SMDNK 487


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 254/611 (41%), Positives = 378/611 (61%), Gaps = 36/611 (5%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ- 60
           +P+S  +  +LK+  ++   Q   Q+H H++  G      + T L+++    G + YA+ 
Sbjct: 129 EPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAEL 188

Query: 61  ------------------------------RIFFCIPSPDSFLFNTLIIRNSKANFSTDS 90
                                         R+F  IP  D+  +N +I   +++    ++
Sbjct: 189 VFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEA 248

Query: 91  LLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNF 150
           L F++ M  +N++P+  T   V+ +CA    L LG  V   +   G  S+L +  AL++ 
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
           Y+K  ++D AR +F+ + +K +++WN MI GY      KEA+ LF  M+   V P+  T 
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDV-NVVLATSLINMYARCGNVSKAREIFDMMS 269
           V +L ACA LG +DLG+W+H +I  + L + N  L TSLI+MYA+CGN+  A+++F  M 
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             ++ +W AMISG  MHG+   A+ELF +MR  G  P+++TFV VLSAC+HAGLV+ G +
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
            F+SM ++Y + P ++H+ CM+DL GRAGL +EA   +K+ +  KP  A+W ++LGAC++
Sbjct: 489 CFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKN-MEMKPDGAIWGSLLGACRV 547

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           H N +LG   A+HL  +EPENPG YV+LSNIYA AGR D V  +R  +  KG+KK  G S
Sbjct: 548 HGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCS 607

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
           ++EVD   + F +GDK H  + +IY+ LDE+     +AG+VP++   +++++EE +E SL
Sbjct: 608 SIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSL 667

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
            +HSEKLA+AFGL+ T P  TIRIVKNLR+C +CHSAIK IS   NREII RDR RFHHF
Sbjct: 668 SHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHF 727

Query: 570 KRGSCSCLDYW 580
           K GSCSC+DYW
Sbjct: 728 KDGSCSCMDYW 738



 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 241/451 (53%), Gaps = 48/451 (10%)

Query: 5   QPHSPAYEAILKAGPRL---------KPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDA 53
           QP S     +L+  P L         + L+Q+H+ +I  G   ++  L+KL+    +   
Sbjct: 20  QPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPF 79

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G ++YA  +F  I  P+ F++NT+I  NS ++    ++ FY RM++  + P++YTF  ++
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN----------------- 156
           KSCA +     G+ +H HV   G +SD  V  +L+N YA++                   
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 157 --------------VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
                         +D AR++F+ +P +  V+WN+MI+GY Q+G  +EA+  F  M+   
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           V P+ +T V VL+ACAQ G ++LG WV  +I   GL  N+ L  +LI+MY++CG++ KAR
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR 319

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           ++F+ + E ++I+W  MI GY       EA+ LF +M+   V PN+VTFV++L ACA+ G
Sbjct: 320 DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLG 379

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP-AVWT 381
            +  G  + A + +++  L        ++D++ + G + EA K V    G KP     W 
Sbjct: 380 ALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNI-EAAKQV--FAGMKPKSLGSWN 436

Query: 382 AMLGACKMHKNFDLGVEVAEHLLS--VEPEN 410
           AM+    MH + ++ +E+   +     EP++
Sbjct: 437 AMISGLAMHGHANMALELFRQMRDEGFEPDD 467


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/570 (41%), Positives = 358/570 (62%), Gaps = 7/570 (1%)

Query: 14  ILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           IL A   L+ L+   Q+H+     G      +LT  +SL    G I     +F     PD
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPD 286

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
              +N +I   +    +  SL  ++ +++S     + T  +++    HL ++    A+H 
Sbjct: 287 IVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI---YAIHG 343

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
           +   S + S   V  AL   Y+K N ++ ARK+FD  P+KS+ +WN+MISGY QNG  ++
Sbjct: 344 YCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTED 403

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           AI LF  M+    +P+  T  C+L+ACAQLG + LG+WVH+ +     + ++ ++T+LI 
Sbjct: 404 AISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIG 463

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MYA+CG++++AR +FD+M++ N + W  MISGYG+HG G EA+ +F+ M   G+ P  VT
Sbjct: 464 MYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVT 523

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           F+ VL AC+HAGLV+EG  +F SM   YG  P V+H+ CMVD+ GRAG L  A +F+ + 
Sbjct: 524 FLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFI-EA 582

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
           +  +P  +VW  +LGAC++HK+ +L   V+E L  ++P+N G++V+LSNI++      + 
Sbjct: 583 MSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQA 642

Query: 431 EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
             VR    ++ L K  GY+ +E+ +  ++F+ GD+SHP   EIY+ L++L G+ REAGY 
Sbjct: 643 ATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQ 702

Query: 491 PESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFI 550
           PE+E A+H++EEEERE  ++ HSE+LA+AFGL+ T PG  IRI+KNLR+C+DCH+  K I
Sbjct: 703 PETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLI 762

Query: 551 SVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S  T R I+VRD  RFHHFK G CSC DYW
Sbjct: 763 SKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/464 (27%), Positives = 213/464 (45%), Gaps = 34/464 (7%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
            Y    K    +  L Q HA +I+ G+    S+LTKL   + D G I YA+ IF  +  P
Sbjct: 22  TYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRP 81

Query: 70  DSFLFNTLIIRNSKANFSTDSLL--FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
           D FLFN L+ R    N S  S L  F      +++ P++ T++  I + +       GR 
Sbjct: 82  DVFLFNVLM-RGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRV 140

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H    V G DS+L + + +V  Y K   V+ ARKVFDRMP+K  + WN+MISGY +N  
Sbjct: 141 IHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEM 200

Query: 188 AKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
             E+I +F +L+ +     D+TT + +L A A+L ++ LG  +H      G   +  + T
Sbjct: 201 YVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLT 260

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
             I++Y++CG +     +F    + +++A+ AMI GY  +G    ++ LF  +   G R 
Sbjct: 261 GFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARL 320

Query: 307 NNVTFVAVLSACAHAGLVQEGH------------RVFASMRQEYGLLPGVEHHV------ 348
            + T V+++    H  L+   H             V  ++   Y  L  +E         
Sbjct: 321 RSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDES 380

Query: 349 ---------CMVDLFGRAGLLNEAYKFVKDVIGEK--PAPAVWTAMLGACKMHKNFDLGV 397
                     M+  + + GL  +A    +++   +  P P   T +L AC       LG 
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGK 440

Query: 398 EVAEHLLSVEPENPGHY-VMLSNIYALAGRMDRVEVVRNIMIQK 440
            V + + S + E+  +    L  +YA  G +     + ++M +K
Sbjct: 441 WVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKK 484


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/570 (41%), Positives = 367/570 (64%), Gaps = 3/570 (0%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLL--SLVCDAGFITYAQRIFFCIPSPD 70
           A +K   R+  L+ + AH++ A   +   + +KL+  S V  +G + YA RIF C   P+
Sbjct: 12  AAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPN 71

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
            F++NT+I   S ++    ++  YR M +  ISP++YTF  V+K+C  L  L  G+ +H 
Sbjct: 72  LFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHS 131

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
            +   G D +  +   L+  YA    +D A  +FD MP+    +W++M+SGY QNG A E
Sbjct: 132 QIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVE 191

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ LF  M+   V+ D+ T   V+  C  LG +DLG+WVH ++  +G+ ++VVL T+L+ 
Sbjct: 192 ALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVG 251

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MY++CG++  A ++F  M+E +V AW+ MI+GY +HG+G +A++LF  M+     PN VT
Sbjct: 252 MYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVT 311

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           F +VLSAC+H+GLV++GH++F +M  EY + P ++H+ CMVDLF RAG++  A+KF++ +
Sbjct: 312 FTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTM 371

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
             E P   +W  +LGACK H   DLG  ++  +L ++P +P +YV++SN+YA  GR   V
Sbjct: 372 PIE-PNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSV 430

Query: 431 EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
             VR++M  K  KK  G+S++E++   + F MGD+SHP   +IY  L ++  + ++ G+V
Sbjct: 431 CQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHV 490

Query: 491 PESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFI 550
             +   +H+++EEE+EY+L  HSE+LA+A+GL+ T  G  IRIVKNLR+C DCH  IK I
Sbjct: 491 NSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLI 550

Query: 551 SVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S   NREIIVRDR+RFHHF+   CSC DYW
Sbjct: 551 SEVYNREIIVRDRVRFHHFRERGCSCNDYW 580


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/570 (41%), Positives = 359/570 (62%), Gaps = 7/570 (1%)

Query: 14  ILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           IL A   L+ L+   Q+H+     G      +LT  +SL    G I  A  +F     PD
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPD 286

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
              +N +I   +    +  SL  ++ +++S     + T  +++    HL ++    A+H 
Sbjct: 287 IVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLI---YAIHG 343

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
           +   S + S   V  AL   Y+K N ++ ARK+FD  P+KS+ +WN+MISGY QNG  ++
Sbjct: 344 YSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTED 403

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           AI LF  M++   +P+  T  C+L+ACAQLG + LG+WVH+ +     + ++ ++T+LI 
Sbjct: 404 AISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIG 463

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MYA+CG++++AR +FD M + N + W  MISGYG+HG+G EA+ +F  M   G+ P  VT
Sbjct: 464 MYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVT 523

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           F+ VL AC+HAGLV+EG  +F SM   YG  P V+H+ C+VD+ GRAG L  A +F+ + 
Sbjct: 524 FLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFI-EA 582

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
           +  +P P+VW  +LGAC++HK+ +L   V+E L  ++P+N G++V+LSNI++      + 
Sbjct: 583 MPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQA 642

Query: 431 EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
             VR    ++ L K  GY+ +E+ +  ++F+ GD+SHP    I++ L++L G+ REAGY 
Sbjct: 643 ATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQ 702

Query: 491 PESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFI 550
           PE+E A+H++EEEERE  ++ HSE+LA+AFGL+ T PG  IRI+KNLR+C+DCH+A K I
Sbjct: 703 PETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLI 762

Query: 551 SVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S  T R I+VRD  RFHHFK G CSC DYW
Sbjct: 763 SKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 211/460 (45%), Gaps = 34/460 (7%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           + K    +  L Q HA +++ G+    S+LTKL   + D G I YA+ IF  +  PD FL
Sbjct: 26  LFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFL 85

Query: 74  FNTLIIRNSKANFSTDSLL--FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           FN L+ R    N S  S L  F      +++ P++ T++  I + +       G  +H  
Sbjct: 86  FNVLM-RGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQ 144

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
             V G DS+L + + +V  Y K   V+ ARKVFDRMP+K  + WN+MISGY +N    E+
Sbjct: 145 AIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVES 204

Query: 192 IGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           I +F +L+ +     D+TT + +L A A+L ++ LG  +H      G   +  + T  I+
Sbjct: 205 IQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFIS 264

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           +Y++CG +  A  +F      +++A+ AMI GY  +G    ++ LF  +   G +  + T
Sbjct: 265 LYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSST 324

Query: 311 FVAVLSACAHAGLVQEGH------------RVFASMRQEYGLLPGVEHHV---------- 348
            V+++    H  L+   H             V  ++   Y  L  +E             
Sbjct: 325 LVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKS 384

Query: 349 -----CMVDLFGRAGLLNEAYKFVKDVIGEK--PAPAVWTAMLGACKMHKNFDLGVEVAE 401
                 M+  + + GL  +A    +++   +  P P   T +L AC       LG  V +
Sbjct: 385 LPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHD 444

Query: 402 HLLSVEPENPGHY-VMLSNIYALAGRMDRVEVVRNIMIQK 440
            + S + E+  +    L  +YA  G +     + + M +K
Sbjct: 445 LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKK 484


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/579 (41%), Positives = 357/579 (61%), Gaps = 3/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P +    ++L A   +  +     VH+     G      +LT L+SL    G +  A+ 
Sbjct: 209 RPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARC 268

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +  PD   +N LI   S       S+  +  ++   + P++ T  A+I   +    
Sbjct: 269 LFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGH 328

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
             L + +H  V  SG+ ++  V  A+   + + N+++ ARK FD MP+K++ +WN+MISG
Sbjct: 329 DLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISG 388

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y QNG  + A+ LF  M    V P+  T    L+ACAQLG + LG+W+H  I  + L+ N
Sbjct: 389 YAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPN 448

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V + T+LI+MYA+CG++S+AR IF+ M   NV++W AMI+GYG+HG G EA++L+  M  
Sbjct: 449 VYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLD 508

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             + P + TF++VL AC+H GLV+EG +VF SM  +Y + PG+EH  CMVDL GRAG L 
Sbjct: 509 AHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLK 568

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA++ + +       P VW A+LGAC +HK+ DL    ++ L  ++PEN G+YV+LSN++
Sbjct: 569 EAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLH 628

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
               +     VVR     + L K  GY+ +E+  K ++F  GD++HP +  IY YL++L 
Sbjct: 629 TSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLT 688

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            +  EAGY PE+E+A++++EEEE+E+ ++ HSEKLA+AFGL+ T PG  IRI+KNLR+C+
Sbjct: 689 AKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCL 748

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+A KFIS  T R I+VRD  RFHHF+ G CSC DYW
Sbjct: 749 DCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 190/372 (51%), Gaps = 17/372 (4%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLI--IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           + +A+++F  +PSPD+ L+NTL+  +  S+A  S     F R +   ++ P   T ++V+
Sbjct: 165 VDHARKVFDTVPSPDTVLWNTLLAGLSGSEAVES-----FARMVCDGSVRPDATTLASVL 219

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
            + A ++ + +GR VH      G     HV   L++ Y+K  +V+ AR +FD M    +V
Sbjct: 220 PAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLV 279

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           A+N++ISGY  NG    ++ LF  +   G+ P+S+T V ++   +  G   L + +H F+
Sbjct: 280 AYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFV 339

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  G   N  ++T++  ++ R  ++  AR+ FD M E  + +W AMISGY  +G    AV
Sbjct: 340 LKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAV 399

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGVEHHVCM 350
            LF +M    VRPN +T  + LSACA  G +  G   HR+      E  L P V     +
Sbjct: 400 ALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIIT----EEDLEPNVYVMTAL 455

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410
           +D++ + G ++EA +    +  +      W AM+    +H      +++ + +L      
Sbjct: 456 IDMYAKCGSISEARRIFNTM--DNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAH-LL 512

Query: 411 PGHYVMLSNIYA 422
           P     LS +YA
Sbjct: 513 PTSATFLSVLYA 524



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 214/469 (45%), Gaps = 66/469 (14%)

Query: 21  LKPLQQVHAHLIVAGY-----GRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFN 75
           L+ L Q+ A  + +G+       + S+L +  SL    G +    R+F   P PD FL N
Sbjct: 31  LRHLDQILAVSLASGHYPLDPAPATSLLLRYASLRAPTGHLL---RLFRGFPRPDRFLRN 87

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL-------SILNLGRAV 128
            L+           SL   R  ++    P +++F+    S A L       +  +  RA+
Sbjct: 88  ALL----------RSLPSLRPRLLFPC-PDSFSFAFAATSLAALCSRGGGAASSSAARAL 136

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H     +GY +D  V +AL   Y   + VD ARKVFD +P    V WN++++G       
Sbjct: 137 HALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS----G 192

Query: 189 KEAIGLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            EA+  F  M  D  V PD+TT   VL A A++ D+ +GR VH F    GL  +  + T 
Sbjct: 193 SEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTG 252

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           LI++Y++CG+V  AR +FDMM + +++A+ A+ISGY ++G    +V LF  +   G+ PN
Sbjct: 253 LISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPN 312

Query: 308 NVTFVA-----------VLSACAHAGLVQEGHRV-----------------FASMRQEYG 339
           + T VA           +L+ C H  +++ G                      S R+ + 
Sbjct: 313 SSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFD 372

Query: 340 LLP--GVEHHVCMVDLFGRAGLLNEAYKFVKDVI--GEKPAPAVWTAMLGACKMHKNFDL 395
            +P   +E    M+  + + GL   A    + ++    +P P   ++ L AC       L
Sbjct: 373 TMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSL 432

Query: 396 GVEVAEHLLSVEPENPGHYVM--LSNIYALAGRMDRVEVVRNIMIQKGL 442
           G +    +++ E   P  YVM  L ++YA  G +     + N M  K +
Sbjct: 433 G-KWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNV 480


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/554 (42%), Positives = 342/554 (61%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH + +  G      ++T L+SL    G +  AQ +F  + +PD   +N LI   S    
Sbjct: 234 VHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGM 293

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
              S+  ++ +  S   P++ T  AVI   +      L R +H  V  +  D+D  V  A
Sbjct: 294 VESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTA 353

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L   Y + N+++ AR +FD M +K++ +WN+MISGY QNG  + A+ LF LM++  V P+
Sbjct: 354 LTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPN 413

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T    L+ACA LG + LG+WVH  I  + L++NV + T+LI+MYA+CG++++AR IFD
Sbjct: 414 PITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFD 473

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M   NV++W AMISGYG+HG G EA++L+  M    + P + TF++V+ AC+H GLV E
Sbjct: 474 RMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDE 533

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G +VF  M  EY + PG+EH  CMVDL GRAG LNEA + + +       P VW A+LGA
Sbjct: 534 GQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGA 593

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C +HKN DL    ++ L  ++ EN G+YV+LSN+Y          VVR     + L K  
Sbjct: 594 CMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTP 653

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
           G + +E+  + ++F  GD  HP +  IY YL+ L  +  EAGY P +E+A++++EEEE+E
Sbjct: 654 GCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKE 713

Query: 507 YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
           + ++ HSEKLA+AFGL+ T PG  IRI+KNLR+C+DCH+A KFIS  T R I+VRD  RF
Sbjct: 714 HMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRF 773

Query: 567 HHFKRGSCSCLDYW 580
           HHF+ G CSC DYW
Sbjct: 774 HHFRDGVCSCGDYW 787



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 215/422 (50%), Gaps = 17/422 (4%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + +H   + AGY     + + L  L         A+++F  +PSPD+ L+NTL+      
Sbjct: 134 RTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLL----AG 189

Query: 85  NFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
              +++L  + RM+    + P + T ++ +++ A  S + +GR VH +    G     HV
Sbjct: 190 LPGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHV 249

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
              L++ Y+K  ++D A+ +FDRM +  +VA+N++ISGY  NG  + ++ LF  +   G 
Sbjct: 250 VTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGW 309

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            P+S+T V V+   +  G   L R +H F+V   LD + +++T+L  +Y R  ++  AR 
Sbjct: 310 RPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARS 369

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           IFD M E  + +W AMISGY  +G    AV LF  M+   V+PN +T  + LSACAH G 
Sbjct: 370 IFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGA 429

Query: 324 VQEG---HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
           +  G   HR+ +  + E      V     ++D++ + G + EA + + D +  K   + W
Sbjct: 430 LSLGKWVHRIISKEKLEL----NVYVMTALIDMYAKCGSIAEA-RSIFDRMDNKNVVS-W 483

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVEVVRNIMI 438
            AM+    +H      +++ + +L      P     LS IYA +  G +D  + V  +M 
Sbjct: 484 NAMISGYGLHGQGAEALKLYKDMLDARIL-PTSSTFLSVIYACSHGGLVDEGQKVFRVMT 542

Query: 439 QK 440
            +
Sbjct: 543 NE 544



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 191/435 (43%), Gaps = 77/435 (17%)

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           R+F   P PD FL N L+           SL   R  ++   SP +++F+    S +   
Sbjct: 75  RLFRAFPCPDRFLRNALL----------RSLPSLRPHLLFP-SPDSFSFAFAATSLSSSC 123

Query: 121 ILN-----LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
                     R +H     +GY +D  V +AL   Y K +  D ARKVFD +P    + W
Sbjct: 124 SSRGNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILW 183

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           N++++G        EA+  F  M D G V PDSTT    L A A+   + +GR VH + V
Sbjct: 184 NTLLAGLP----GSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGV 239

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             GL  +  + T L+++Y++CG++  A+ +FD M   +++A+ A+ISGY ++G    +VE
Sbjct: 240 KCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVE 299

Query: 295 LFHRMRAHGVRPNNVTFVAV-----------LSACAHAGLV------------------- 324
           LF  + A G RPN+ T VAV           L+ C HA +V                   
Sbjct: 300 LFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYC 359

Query: 325 -----QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK--DVIGEKPAP 377
                +    +F +M ++      +E    M+  + + GL   A    +    +  +P P
Sbjct: 360 RLNDMESARSIFDAMLEK-----TMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNP 414

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM--LSNIYALAG---------- 425
              ++ L AC       LG  V   ++S E      YVM  L ++YA  G          
Sbjct: 415 ITISSTLSACAHLGALSLGKWV-HRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFD 473

Query: 426 RMDRVEVVR-NIMIQ 439
           RMD   VV  N MI 
Sbjct: 474 RMDNKNVVSWNAMIS 488


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/600 (41%), Positives = 364/600 (60%), Gaps = 35/600 (5%)

Query: 15  LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCIPSPDSF 72
           L +   LK L Q+HA  I  G      + +++LS   +   G I YA+ +F+ I  PD F
Sbjct: 42  LSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIF 101

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNIS-PSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           + NTLI   + +    D+++FY  M  S++  P  +TF  ++K+C+ +  L LG A+H H
Sbjct: 102 IANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSH 161

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR------------------------- 166
           VF  G+ S++ V   LV  YA    ++ A  VFDR                         
Sbjct: 162 VFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSA 221

Query: 167 ------MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
                 MPD+ VV+W+ MI+GY Q    KE +GLF  M    + P+ +  V  L+ACA L
Sbjct: 222 RRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHL 281

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
           G ++ G+W+  ++  + + + V L T+LI+MY++CG+V +A E+F  M E NV+AW+AMI
Sbjct: 282 GAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMI 341

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +G  ++G G +A+ LF +M   GV+PN VTF+ +L+AC+H+ LV EG   F SM   YGL
Sbjct: 342 NGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGL 401

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P   HH CMVDL+GRAG+L++A   +K  +  KP  A+W A+L AC++H + +LG +V 
Sbjct: 402 KPNAHHHCCMVDLYGRAGMLDQAQTVIKS-MPFKPNSAIWGALLNACRIHGDTELGEQVG 460

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           + LL ++P + G YV+LSNIYA  GR DRV  +R +M ++ + K  G S +++    + F
Sbjct: 461 KRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEF 520

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
             GD SHP    IY  L E+    + AGY P++   + +++EEE+E +L +HSEKLA+AF
Sbjct: 521 VAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAF 580

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL++T PG TIRI KNLR+C DCHSA K IS   NREIIVRDR RFHHF+ GSCSC+D+W
Sbjct: 581 GLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/588 (42%), Positives = 366/588 (62%), Gaps = 32/588 (5%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           L+Q+HAHL+      S   L+++ S+       +YA+ IF  + + +   +NT +   ++
Sbjct: 31  LKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAE 90

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
            +   D++  + R+   +ISP +YT S V+K+C+ L  +  G+ VH +V   G  S++ +
Sbjct: 91  GDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFL 150

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN--------------------------- 176
           Q  +V+ YA    + VARKVFD+MP + V+ WN                           
Sbjct: 151 QNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNV 210

Query: 177 ----SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
               SMI GY Q G +KEAI LF  M D G+ P+  T V VL ACA +G++ LGR +H+F
Sbjct: 211 RSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDF 270

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
               G + N+ +  +LI+MY +CG +  A  IFD M E  V++W+AMI+G   HG   +A
Sbjct: 271 SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDA 330

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           + LF++M   GV+PN VTF+ +L AC+H G+V++G + FASM ++YG++P +EH+ CMVD
Sbjct: 331 LALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVD 390

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           LF RAGLL EA++F+ + +   P   VW A+LG CK+HKN  L  E   HL  ++P N G
Sbjct: 391 LFSRAGLLQEAHEFIMN-MPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDG 449

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
           +YV+LSNIYA AGR + V  VR +M  +G+KK  G+S++ V+   Y F  GD +HP T E
Sbjct: 450 YYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEE 509

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           I+Q  ++L+ R +  GYVP +   + ++EE+++E  L  HSEKLA+ FGL++T+PG  IR
Sbjct: 510 IFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIR 569

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           I+KNLR+C DCH+A+K ISV + REI+VRDR RFH FK GSCSC DYW
Sbjct: 570 IMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/559 (41%), Positives = 369/559 (66%), Gaps = 3/559 (0%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTK--LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           L+Q+HA  I  G   +   + K  + ++V  +  ++YA  +F  I +P+ F +NT+I   
Sbjct: 34  LKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGY 93

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           ++++  + + LFYR+M+VS + P  +T+  ++K+ +    +  G A+H     +G++S +
Sbjct: 94  AESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLV 153

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            VQ +L++ YA   + + A KVF+ M ++ +VAWNSMI+G+  NG   EA+ LF  M   
Sbjct: 154 FVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVE 213

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           GV PD  T V +L+A A+LG ++LGR VH +++  GL  N  +  SL+++YA+CG + +A
Sbjct: 214 GVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREA 273

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           + +F  MSE N ++WT++I G  ++G+G EA+ELF  M   G+ P+ +TFV VL AC+H 
Sbjct: 274 QRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHC 333

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
           G++ EG   F  M++E G++P +EH+ CMVDL  RAGL+ +AY+++++ +  +P   +W 
Sbjct: 334 GMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQN-MPVQPNAVIWR 392

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
            +LGAC +H +  LG     HLL++EP++ G YV+LSN+YA   R   V+V+R  M++ G
Sbjct: 393 TLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDG 452

Query: 442 LKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE 501
           +KK  GYS VE+  + Y F+MGD+SHP + ++Y  L+++    +  GYVP + + + ++E
Sbjct: 453 VKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIE 512

Query: 502 EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
           EEE+E +L YHSEK+A+AF L+ T PG  IR++KNLR+C DCH AIK I+   +REI++R
Sbjct: 513 EEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIR 572

Query: 562 DRLRFHHFKRGSCSCLDYW 580
           DR RFHHF+ GSCSC DYW
Sbjct: 573 DRSRFHHFRGGSCSCKDYW 591


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 242/601 (40%), Positives = 376/601 (62%), Gaps = 36/601 (5%)

Query: 15  LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCD----AGFITYAQRIFFCIPSPD 70
           L+    L  L+ +HA++I           ++L++   D       I YA RIF  I +P+
Sbjct: 24  LETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPN 83

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
            F+FN +I  +S +     +  FY +     + P N TF  ++KSC  L  +++G   H 
Sbjct: 84  LFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHG 143

Query: 131 HVFVSGYDSDLHVQAALVNFYA-------------------------------KSNNVDV 159
           H+   G++ D++VQ +LV+ YA                               K  +V+ 
Sbjct: 144 HIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVES 203

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           ARK+FD+MP+K++V W++MISGY QN    +A+ LF +++  GV  + T  V V+++CA 
Sbjct: 204 ARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAH 263

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           LG ++LG   H+++V  G+ +N++L T+L++MYARCG++ KA  +F+ + E + ++WTA+
Sbjct: 264 LGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTAL 323

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           I+G  MHGY   +++ F  M   G+ P ++TF AVLSAC+H GLV+ G ++F SM++++ 
Sbjct: 324 IAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHR 383

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           + P +EH+ CMVDL GRAG L EA +FV   +  KP   VW A+LGAC++HKN ++G  V
Sbjct: 384 VEPRLEHYGCMVDLLGRAGKLEEAERFVLK-MPVKPNAPVWGALLGACRIHKNAEIGERV 442

Query: 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYL 459
            + L+ + P++ G+YV+LSNIYA A   ++V  +R +M  KGLKK  G+S +E+D + + 
Sbjct: 443 GKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHK 502

Query: 460 FSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALA 519
           F++GD SHP  ++I +  +E++ R R AGY   +  A+ +++EEE+E +L  HSEKLA+A
Sbjct: 503 FTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIA 562

Query: 520 FGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           FG+MR+  G  IRIVKNLR+C DCH+A K IS    RE+IVRDR RFHHF++G CSC+DY
Sbjct: 563 FGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDY 622

Query: 580 W 580
           W
Sbjct: 623 W 623


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/557 (43%), Positives = 358/557 (64%), Gaps = 2/557 (0%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           ++QVHAH++  G  +   +  KLL        I  A  +F  +   DS  ++ ++   +K
Sbjct: 19  IRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAK 78

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
           A         +R ++   ++P NYT   VI++C   + L +GR +H  V   G  SD  V
Sbjct: 79  AGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFV 138

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
            A+LV+ YAK   V+ A+++F+RM  K +V W  MI  Y     A E++ LF+ MR+ GV
Sbjct: 139 CASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN-AYESLVLFDRMREEGV 197

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            PD    V V+ ACA+LG +   R+ +++IV  G  ++V+L T++I+MYA+CG+V  ARE
Sbjct: 198 VPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESARE 257

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +FD M E NVI+W+AMI+ YG HG G +A++LFH M +  + PN VTFV++L AC+HAGL
Sbjct: 258 VFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGL 317

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           ++EG R F SM +E+ + P V+H+ CMVDL GRAG L+EA + ++ +  EK    +W+A+
Sbjct: 318 IEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKD-ERLWSAL 376

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           LGAC++H   +L  + A  LL ++P+NPGHYV+LSNIYA AG+ ++V   R++M Q+ LK
Sbjct: 377 LGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLK 436

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K  G++ +EVD K Y FS+GD+SHP + EIY+ L  L+ +   AGYVP+++  + ++EEE
Sbjct: 437 KIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEE 496

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
            ++  L  HSEKLA+AFGL+    G  IRI KNLR+C DCH+  K +S    R IIVRD 
Sbjct: 497 VKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDA 556

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFHHF  G+CSC DYW
Sbjct: 557 NRFHHFNDGTCSCGDYW 573


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 247/583 (42%), Positives = 365/583 (62%), Gaps = 9/583 (1%)

Query: 6   PHSPAYE--AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF 63
           P +P     A+L+A   L  L Q+H H++  G   +  +LTK  S+        YA    
Sbjct: 25  PRAPEQNCLALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFL 84

Query: 64  FCIPSP----DSFLFNTLIIRNSKANFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           F   +     D+FLFNTLI   ++   S D +L  Y  M+   I P+ +T+  V+K+CA 
Sbjct: 85  FSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAG 144

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK-SNNVDVARKVFDRMPDKSVVAWNS 177
           L +LNLG+ VH  V   G+D D+HVQ  +V+ Y+  +  ++ ARKVFD MP    V W++
Sbjct: 145 LEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSA 204

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           MI GY + G + EA+ LF  M+   V PD  T V +L+AC  LG ++LG+W+  +I    
Sbjct: 205 MIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHE 264

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           +   V ++ +LI+M+A+CG++SKA ++F  M+E  +++WT++I G  MHG G EA  LF 
Sbjct: 265 IHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFE 324

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
            M + GV P++V F+ +LSAC+H+GLV+ G   F SM ++Y L+P +EH+ CMVD++ R 
Sbjct: 325 EMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRT 384

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           GL+ EA +FV+++  E P P +   ++ AC+ H  F LG ++ + L+  EP +  +YV+L
Sbjct: 385 GLVKEALEFVRNMPIE-PNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLL 443

Query: 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL 477
           SNIYA     ++   +R +M  KG+KK  G + +E+D + Y F  GDKSH    EIY+ +
Sbjct: 444 SNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMV 503

Query: 478 DELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNL 537
           DE+    +++GY P +   + ++ EE++E SL  HSEKLA+AFGL+RT PG  IRIVKNL
Sbjct: 504 DEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPPGTPIRIVKNL 563

Query: 538 RMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R+C DCHSA KFIS   +REII+RDR RFHHFK G CSC D+W
Sbjct: 564 RVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/565 (42%), Positives = 359/565 (63%), Gaps = 7/565 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT----YAQRIFFCIPSPDSFLFNT 76
           LK L+Q+ A  I         +LTKL++  C     T    YA ++F  IP PD  LFN+
Sbjct: 39  LKELKQIQAFSIKTHLQNDLQILTKLIN-SCTQNPTTASMDYAHQLFEAIPQPDIVLFNS 97

Query: 77  LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
           +    S++N    ++  + + +  N+ P +YTF +++K+C        G+ +HC     G
Sbjct: 98  MFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLG 157

Query: 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN 196
            + + +V   L+N YA  N+VD A++VFD + +  VV++N++I+GY ++    EA+ LF 
Sbjct: 158 LNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFR 217

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            ++   + P+  T + VL++CA LG +DLG+W+HE++   GLD  V + T+LI+MYA+CG
Sbjct: 218 QLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCG 277

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
           ++  A  +F+ MS  +  AW+AMI  Y MHG G + + +F  M    V+P+ +TF+ +L 
Sbjct: 278 SLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLY 337

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC+H GLV EG R F SM + YG++PG++H+ CMVDL GRAGLL+EAYKF+ D +  KP 
Sbjct: 338 ACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFI-DELPIKPT 396

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
           P +W  +L +C  H N +L  +V   +L ++  + G YV+LSN+ A AG+ + V+ +R +
Sbjct: 397 PILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKL 456

Query: 437 MIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESA 496
           MI KG  K  G S++EVD   + F  GD  H  +  +++ LDEL+   +  GYVP++   
Sbjct: 457 MIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDELVKELKSVGYVPDTSLV 516

Query: 497 MH-ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
           +H ++E+EE+E +LRYHSEKLA++FGL+ T PG TIR+VKNLR+C DCHSA K IS   +
Sbjct: 517 VHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLID 576

Query: 556 REIIVRDRLRFHHFKRGSCSCLDYW 580
           REII+RD  RFHHFK G CSC DYW
Sbjct: 577 REIILRDVQRFHHFKDGKCSCGDYW 601


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/546 (43%), Positives = 352/546 (64%), Gaps = 4/546 (0%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           R     T L++     GF+  A+ +F  IP  D   +N +I   +++    +++ F+  M
Sbjct: 192 RDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEM 251

Query: 98  IVSNISPSNYTFSAVIKSCAHL-SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
             + ++P+  T  +V+ +CA   S L LG  V   +   G  S++ +   L++ Y K  +
Sbjct: 252 RRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGD 311

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           ++ A  +F+++ DK+VV+WN MI GY      KEA+GLF  M    ++P+  T + +L A
Sbjct: 312 LEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPA 371

Query: 217 CAQLGDIDLGRWVHEFIVG--QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
           CA LG +DLG+WVH ++    + +   V L TSLI+MYA+CG+++ A+ IFD M+  ++ 
Sbjct: 372 CANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLA 431

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
            W AMISG+ MHG+   A+ LF RM + G  P+++TFV VL+AC HAGL+  G R F+SM
Sbjct: 432 TWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSM 491

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
            Q+Y + P + H+ CM+DLFGRAGL +EA   VK+ +  KP  A+W ++LGAC++H+  +
Sbjct: 492 IQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKN-MEMKPDGAIWCSLLGACRIHRRIE 550

Query: 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           L   VA+HL  +EPENP  YV+LSNIYA AGR + V  +R  +    +KK  G S++EVD
Sbjct: 551 LAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVD 610

Query: 455 QKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSE 514
              + F +GDK HP +NEIY+ LDE+  R  +AG+VP++   +++++EE +E  L +HSE
Sbjct: 611 SVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSE 670

Query: 515 KLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSC 574
           KLA+AFGL+ T PG TIRI+KNLR+C +CHSA K IS   NREII RDR RFHHFK GSC
Sbjct: 671 KLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSC 730

Query: 575 SCLDYW 580
           SC DYW
Sbjct: 731 SCKDYW 736



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 137/441 (31%), Positives = 223/441 (50%), Gaps = 45/441 (10%)

Query: 8   SPAYE--------AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFIT 57
           SP Y+         +L     L+ L+Q+H+ +I  G   +   L+KL+    V   G ++
Sbjct: 20  SPPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLS 79

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           YA  +F  I +P+  ++N +I   S +     +L +Y  MI S   P+ YTF ++ KSC 
Sbjct: 80  YALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCT 139

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN--------------------- 156
            +   + G+ VH HV   G + +  V  +L+N YA++                       
Sbjct: 140 KIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTA 199

Query: 157 ----------VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
                     +D AR++FD +P + VV+WN+MISGY Q+G  +EA+  F  MR   V P+
Sbjct: 200 LITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPN 259

Query: 207 STTCVCVLAACAQLG-DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
            +T + VL+ACAQ G  + LG WV  +I  +GL  N+ L   LI+MY +CG++ +A  +F
Sbjct: 260 VSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLF 319

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           + + + NV++W  MI GY       EA+ LF RM    + PN+VTF+++L ACA+ G + 
Sbjct: 320 EKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALD 379

Query: 326 EGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            G  V A + +    +   V     ++D++ + G L  A K + D +  K + A W AM+
Sbjct: 380 LGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVA-KRIFDCMNTK-SLATWNAMI 437

Query: 385 GACKMHKNFDLGVEVAEHLLS 405
               MH + D  + +   + S
Sbjct: 438 SGFAMHGHTDTALGLFSRMTS 458



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 154/310 (49%), Gaps = 10/310 (3%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
           A  ++G  L+    V + +   G G +  ++  L+ +    G +  A  +F  I   +  
Sbjct: 269 ACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVV 328

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
            +N +I   +  +   ++L  +RRM+ SNI P++ TF +++ +CA+L  L+LG+ VH +V
Sbjct: 329 SWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYV 388

Query: 133 --FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
              +    + + +  +L++ YAK  ++ VA+++FD M  KS+  WN+MISG+  +G    
Sbjct: 389 DKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDT 448

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLI 249
           A+GLF+ M   G  PD  T V VL AC   G + LG R+    I    +   +     +I
Sbjct: 449 ALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMI 508

Query: 250 NMYARCGNVSKAREIF-DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH--GVRP 306
           +++ R G   +A  +  +M  + +   W +++    +H      +EL   +  H   + P
Sbjct: 509 DLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIH----RRIELAESVAKHLFELEP 564

Query: 307 NNVTFVAVLS 316
            N +   +LS
Sbjct: 565 ENPSAYVLLS 574


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 244/577 (42%), Positives = 360/577 (62%), Gaps = 6/577 (1%)

Query: 8   SPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           S    A+L A   L+ L+    +    +  G+G    +LT L+SL    G +  A+ +F 
Sbjct: 209 SSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFR 268

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123
            I  PD   +N +I     AN  T+ S+  +R ++ S    S+ T   +I   +    L+
Sbjct: 269 RINRPDLIAYNAMI-SGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLH 327

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
           L  ++H     SG   +  V  A    Y K N +D+AR +FD  P+K+VVAWN+MISGY 
Sbjct: 328 LACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYT 387

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG  + AI LF  M      P++ T   +L+ACAQLG +  G+WVH  I  + L+ N+ 
Sbjct: 388 QNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIY 447

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           ++T+L++MYA+CGN+S+A ++FD MSE N + W  MI GYG+HGYG EA++L++ M   G
Sbjct: 448 VSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLG 507

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
             P+ VTF++VL AC+HAGLV EG  +F +M  +Y + P +EH+ CMVD+ GR+G L +A
Sbjct: 508 YNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKA 567

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
            +F+K +  E P PAVW  +LGAC +HK+ D+    +E L  ++P + G+YV+LSNIY++
Sbjct: 568 LEFIKKMPVE-PGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSV 626

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
                +   +R ++ ++ L K  G + +EV+   ++F  GD+SH +  +IY  L++L G+
Sbjct: 627 ERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGK 686

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
            RE GY  E+  A+H++EEEE+E ++  HSEKLA+AFGL+ T PG  IRI+KNLR+C+DC
Sbjct: 687 MREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDC 746

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           H+A KFIS  T R I+VRD  RFHHFK G CSC DYW
Sbjct: 747 HTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/440 (29%), Positives = 216/440 (49%), Gaps = 6/440 (1%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           N  P +  Y   + A    K L  +HAH I+ GYG +  + + L+ L C    + YA+++
Sbjct: 106 NLSPDNFTYAFAVAACSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKV 165

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P  D+ L+NT+I    K     DS+  +R M+   +   + T +AV+ + A L  L
Sbjct: 166 FDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQEL 225

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            +G  + C     G+    +V   L++ Y+K  +V+ AR +F R+    ++A+N+MISG+
Sbjct: 226 KVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGF 285

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
             NG  + ++ LF  +   G    S+T V ++   +  G + L   +H F V  G+ +N 
Sbjct: 286 TANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNP 345

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            ++T+   +Y +   +  AR +FD   E  V+AW AMISGY  +G    A+ LF  M   
Sbjct: 346 TVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKT 405

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
              PN VT   +LSACA  G +  G  V   ++ E  L P +     +VD++ + G ++E
Sbjct: 406 EFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSE-NLEPNIYVSTALVDMYAKCGNISE 464

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A++   D + EK     W  M+    +H      +++   +L +   NP     LS +YA
Sbjct: 465 AWQLF-DSMSEKNT-VTWNTMIFGYGLHGYGHEALKLYNEMLHL-GYNPSAVTFLSVLYA 521

Query: 423 L--AGRMDRVEVVRNIMIQK 440
              AG +   E + + M+ K
Sbjct: 522 CSHAGLVGEGEEIFHNMVNK 541



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 154/535 (28%), Positives = 246/535 (45%), Gaps = 58/535 (10%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           L Q HA  I+ GY    + LTKL   + D     +A+ +FF +P PD FLFN L+   S 
Sbjct: 28  LAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSL 87

Query: 84  ANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
            +  + S+  Y  +   +N+SP N+T++  + +C++   L L   +H H  + GY S++ 
Sbjct: 88  NDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML---LHAHSIIDGYGSNVF 144

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           V +ALV+ Y K + V  ARKVFD MP++  V WN+MI+G  +N    ++I LF  M   G
Sbjct: 145 VGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADG 204

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           V  DS+T   VL A A+L ++ +G  +    +  G      + T LI++Y++CG+V+ AR
Sbjct: 205 VRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTAR 264

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTE-AVELFHRMRAHGVRPNNVTFVAVLS----- 316
            +F  ++  ++IA+ AMISG+  +G GTE +V+LF  +   G R ++ T V ++      
Sbjct: 265 LLFRRINRPDLIAYNAMISGFTANG-GTECSVKLFRELLFSGERVSSSTIVGLIPLHSPF 323

Query: 317 -----ACA-HAGLVQEG-------HRVFASMRQEYGLLPGVEHHV------------CMV 351
                AC+ H   V+ G          F ++  +   +    H               M+
Sbjct: 324 GHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMI 383

Query: 352 DLFGRAGLLNEAYKFVKDVIGEK--PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
             + + G    A    K+++  +  P     T +L AC    +   G  V  HL+  E  
Sbjct: 384 SGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWV-HHLIKSENL 442

Query: 410 NPGHYV--MLSNIYALAGRMDRVEVVRNIMIQK----------GLKKHVGYSTVEVDQKN 457
            P  YV   L ++YA  G +     + + M +K          G   H GY    +   N
Sbjct: 443 EPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLH-GYGHEALKLYN 501

Query: 458 YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYH 512
            +  +G      T     +L  L   C  AG V E E   H +  + R   L  H
Sbjct: 502 EMLHLGYNPSAVT-----FLSVLYA-CSHAGLVGEGEEIFHNMVNKYRIEPLIEH 550


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/579 (40%), Positives = 365/579 (63%), Gaps = 4/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP    +  ILK   RL+ L   +Q+HA ++  G+G    +   L+ +  + G +  A+R
Sbjct: 121 QPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARR 180

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   +   +N++    +K+    + +  +  M+  +I     T  +V+ +C  L+ 
Sbjct: 181 VFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLAD 240

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L LG  ++ +V   G   +  +  +LV+ YAK   VD AR++FD+M  + VVAW++MISG
Sbjct: 241 LELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISG 300

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q    +EA+ LF+ M+   ++P+  T V +L++CA LG ++ G+WVH FI  + + + 
Sbjct: 301 YSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLT 360

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V L T+L++ YA+CG+V  + E+F  M   NV++WT +I G   +G G +A+E F+ M  
Sbjct: 361 VTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLE 420

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             V PN+VTF+ VLSAC+HAGLV EG  +F SM +++G+ P +EH+ CMVD+ GRAGL+ 
Sbjct: 421 KNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIE 480

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA++F+K+ +  +P   +W  +L +CK+HKN ++G E  + L+ +EP + G Y++LSNIY
Sbjct: 481 EAFQFIKN-MPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIY 539

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A  GR +    VR  M +KG+KK  G S +E+D   + F   D  H  + EIY  ++++M
Sbjct: 540 ASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMM 599

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            + + AGYVP +  A  + EE+++E S+ +HSEKLA+AFGL+++ PG TIRI KNLR+C 
Sbjct: 600 KQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCT 659

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+A K +S   NREI+VRDR RFHHFK GSCSC DYW
Sbjct: 660 DCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 209/383 (54%), Gaps = 10/383 (2%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLL--SLVCDAGFITYAQRIF 63
           P +P    IL+    ++ L ++HAHLI         +   LL  + +     + YA  IF
Sbjct: 23  PENPKT-LILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIF 81

Query: 64  FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123
             I  PDS  +N +I   +      +++L ++ M  +++ P  +TF  ++K C+ L  L+
Sbjct: 82  RQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALS 141

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
            G  +H  +   G+ S   V+  L++ YA    V+VAR+VFD M +++V  WNSM +GY 
Sbjct: 142 EGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYT 201

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           ++G  +E + LF+ M +  +  D  T V VL AC +L D++LG W++ ++  +GL  N  
Sbjct: 202 KSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPT 261

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           L TSL++MYA+CG V  AR +FD M   +V+AW+AMISGY       EA++LFH M+   
Sbjct: 262 LITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKAN 321

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           + PN +T V++LS+CA  G ++ G  V   ++++   L  V     ++D + + G +  +
Sbjct: 322 IDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLT-VTLGTALMDFYAKCGSVESS 380

Query: 364 YKFVKDVIGEKPAPAV--WTAML 384
                +V G+ P   V  WT ++
Sbjct: 381 I----EVFGKMPVKNVLSWTVLI 399


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/560 (42%), Positives = 347/560 (61%), Gaps = 38/560 (6%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G I ++  +F     PD FLF   I   S       + L Y +++ S I+P+ +TFS+++
Sbjct: 76  GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSIL 135

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS-- 171
           KSC+  S    G+ +H HV   G   D +V   LV+ YAK  +V  A+KVFDRMP++S  
Sbjct: 136 KSCSTKS----GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLV 191

Query: 172 -----------------------------VVAWNSMISGYEQNGFAKEAIGLFN-LMRDF 201
                                        +V+WN MI GY Q+GF  +A+ LF  L+ D 
Sbjct: 192 SSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADG 251

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
              PD  T V  L+AC+Q+G ++ GRW+H F+    + +NV + T+LI+MY++CG++ +A
Sbjct: 252 KPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEA 311

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA-HGVRPNNVTFVAVLSACAH 320
             +F+     +++AW AMI+GY MHGY  +A+ LF  M+   G++P ++TF+  L ACAH
Sbjct: 312 VLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAH 371

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
           AGLV EG ++F SM QEYG+ P +EH+ C+V L GRAG L  AY+ +K++  E  +  +W
Sbjct: 372 AGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADS-VLW 430

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
           +++LG+CK+H  F LG E+AE+L+     N G YV+LSNIYAL G  + V  VRN+M +K
Sbjct: 431 SSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEK 490

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
           G+ K  G ST+E+D K + F  GD+ H  + EIY  L ++  R +  GYVP + + +H+L
Sbjct: 491 GIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDL 550

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
           EE E+E SL+ HSE+LA+A+GL+ T PG  ++I KNLR+C DCH+  K IS  T R+I++
Sbjct: 551 EETEKERSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVM 610

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RDR RFHHF  GSCSC D+W
Sbjct: 611 RDRNRFHHFSDGSCSCDDFW 630


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/540 (42%), Positives = 344/540 (63%), Gaps = 3/540 (0%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN 101
           +LT L+SL    G     + +F  I  PD   +N +I   +  + +  ++  +R ++ S 
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
              ++ T   +I      + L L R +       G      V  AL   Y + N V  AR
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           ++FD  P+KS+ +WN+MISGY QNG    AI LF  M    ++P+  T   +L+ACAQLG
Sbjct: 371 QLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLG 429

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            + +G+WVH  I  + L+ NV ++T+L++MYA+CG++ +AR++FD+M + NV+ W AMI+
Sbjct: 430 ALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMIT 489

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           GYG+HG+G EA++LF+ M   G+ P  VTF+++L AC+H+GLV EG+ +F SM   YG  
Sbjct: 490 GYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQ 549

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P  EH+ CMVD+ GRAG L  A +F++ +  E P PAVW A+LGAC +HKN ++    ++
Sbjct: 550 PMSEHYACMVDILGRAGQLTNALEFIERMPLE-PGPAVWGALLGACMIHKNTEMANVASK 608

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
            L  ++PEN G+YV+LSNIY+      +   VR ++ ++ L K  G + +E+D + Y+F+
Sbjct: 609 RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFT 668

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPES-ESAMHELEEEEREYSLRYHSEKLALAF 520
            GD+SHP    I++ L++L G+ REAGY  E+  +A+H++E+EE+E  +  HSEKLA+AF
Sbjct: 669 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 728

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+ T PG  IRI+KNLR+C+DCH+A KFIS  T R I+VRD  RFHHFK G CSC DYW
Sbjct: 729 GLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 224/447 (50%), Gaps = 8/447 (1%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           +  +L     L  L Q+ A LI+ G     S +TKL     D G + + +++F  +  PD
Sbjct: 17  FLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPD 76

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRM-IVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
            FLFN LI   S       S+  Y  +   +N+ P N+T++  I + + L    +G  +H
Sbjct: 77  LFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLH 136

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
            H  V G  S+L V +A+V+ Y K    ++ARKVFD MP++  V WN+MISG+ +N + +
Sbjct: 137 AHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFE 196

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           ++I +F  M D G++ DSTT   VL A A+L +  LG  +      +GL  +V + T LI
Sbjct: 197 DSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLI 256

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           ++Y++CG   K R +FD + + ++I++ AMISGY  +     AV LF  + A G R N+ 
Sbjct: 257 SLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSS 316

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           T V ++        +Q   R+  ++  + G++        +  ++ R   LNE  +F + 
Sbjct: 317 TLVGLIPVYLPFNHLQLS-RLIQNLSLKIGIILQPSVSTALTTVYCR---LNEV-QFARQ 371

Query: 370 VIGEKP--APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           +  E P  + A W AM+     +   D  + + + ++     NP     + +  A  G +
Sbjct: 372 LFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGAL 431

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVD 454
              + V  ++  + L+ +V  ST  VD
Sbjct: 432 SIGKWVHGLIKSERLESNVYVSTALVD 458


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/540 (42%), Positives = 344/540 (63%), Gaps = 3/540 (0%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN 101
           +LT L+SL    G     + +F  I  PD   +N +I   +  + +  ++  +R ++ S 
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
              ++ T   +I      + L L R +       G      V  AL   Y + N V  AR
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           ++FD  P+KS+ +WN+MISGY QNG    AI LF  M    ++P+  T   +L+ACAQLG
Sbjct: 371 QLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLG 429

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            + +G+WVH  I  + L+ NV ++T+L++MYA+CG++ +AR++FD+M + NV+ W AMI+
Sbjct: 430 ALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMIT 489

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           GYG+HG+G EA++LF+ M   G+ P  VTF+++L AC+H+GLV EG+ +F SM   YG  
Sbjct: 490 GYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQ 549

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P  EH+ CMVD+ GRAG L  A +F++ +  E P PAVW A+LGAC +HKN ++    ++
Sbjct: 550 PMSEHYACMVDILGRAGQLTNALEFIERMPLE-PGPAVWGALLGACMIHKNTEMANVASK 608

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
            L  ++PEN G+YV+LSNIY+      +   VR ++ ++ L K  G + +E+D + Y+F+
Sbjct: 609 RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFT 668

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPES-ESAMHELEEEEREYSLRYHSEKLALAF 520
            GD+SHP    I++ L++L G+ REAGY  E+  +A+H++E+EE+E  +  HSEKLA+AF
Sbjct: 669 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 728

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+ T PG  IRI+KNLR+C+DCH+A KFIS  T R I+VRD  RFHHFK G CSC DYW
Sbjct: 729 GLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 224/447 (50%), Gaps = 8/447 (1%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           +  +L     L  L Q+ A LI+ G     S +TKL     D G + + +++F  +  PD
Sbjct: 17  FLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPD 76

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRM-IVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
            FLFN LI   S       S+  Y  +   +N+ P N+T++  I + + L    +G  +H
Sbjct: 77  LFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLH 136

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
            H  V G  S+L V +A+V+ Y K    ++ARKVFD MP++  V WN+MISG+ +N + +
Sbjct: 137 AHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFE 196

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           ++I +F  M D G++ DSTT   VL A A+L +  LG  +      +GL  +V + T LI
Sbjct: 197 DSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLI 256

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           ++Y++CG   K R +FD + + ++I++ AMISGY  +     AV LF  + A G R N+ 
Sbjct: 257 SLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSS 316

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           T V ++        +Q   R+  ++  + G++        +  ++ R   LNE  +F + 
Sbjct: 317 TLVGLIPVYLPFNHLQLS-RLIQNLSLKIGIILQPSVSTALTTVYCR---LNEV-QFARQ 371

Query: 370 VIGEKP--APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           +  E P  + A W AM+     +   D  + + + ++     NP     + +  A  G +
Sbjct: 372 LFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGAL 431

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVD 454
              + V  ++  + L+ +V  ST  VD
Sbjct: 432 SIGKWVHGLIKSERLESNVYVSTALVD 458


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/588 (41%), Positives = 372/588 (63%), Gaps = 13/588 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   +   +K+   L  L   +Q H   ++ G+     + + L+ +    G +  A+ 
Sbjct: 149 KPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDART 208

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN--------ISPSNYTFSAVI 113
           +F  I   +   + ++I    + + +  +LL ++  +V          +        +V+
Sbjct: 209 LFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVL 268

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
            +C+ +S  ++   VH  +   G++ DL V+  L++ YAK   + V+R+VFD M ++ V+
Sbjct: 269 SACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVI 328

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           +WNS+I+ Y QNG + E++ +F+ M +D  +N ++ T   VL ACA  G   LG+ +H+ 
Sbjct: 329 SWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQ 388

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           ++  GL+ NV + TS+I+MY +CG V  AR+ FD M E NV +W+AM++GYGMHG+  EA
Sbjct: 389 VIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEA 448

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           +E+F+ M   GV+PN +TFV+VL+AC+HAGL++EG   F +M  E+ + PGVEH+ CMVD
Sbjct: 449 LEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVD 508

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L GRAG L EA+  +K  +  +P   VW A+LGAC+MHKN DLG   A  L  ++P+N G
Sbjct: 509 LLGRAGYLKEAFDLIKG-MKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCG 567

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
           +YV+LSNIYA AGR + VE +R +M   GL K  G+S V++  + ++F +GD+ HP   +
Sbjct: 568 YYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEK 627

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           IY+YL++L  + +E GYVP+  S +H++  EE+E  LR HSEKLA+AFG+M T PG TI 
Sbjct: 628 IYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIH 687

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           I+KNLR+C DCH+AIKFIS   +REI+VRD  RFHHF+ G CSC DYW
Sbjct: 688 IIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 190/346 (54%), Gaps = 18/346 (5%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           +   + F +N++I   +++  S ++L  +  M   ++ P+  TF   IKSC+ L  L+ G
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 171

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           R  H    + G++ DL V +ALV+ Y+K   +  AR +FD +  +++V+W SMI+GY QN
Sbjct: 172 RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 231

Query: 186 GFAKEAIGLFN--LMRDFGVNPDSTTC------VCVLAACAQLGDIDLGRWVHEFIVGQG 237
             A  A+ LF   L+ + G   D   C      V VL+AC+++ +  +   VH F++ +G
Sbjct: 232 DDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRG 291

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
            + ++ +  +L++ YA+CG +  +R +FD M+E +VI+W ++I+ Y  +G  TE++E+FH
Sbjct: 292 FEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFH 351

Query: 298 RMRAHG-VRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGVEHHVCMVDL 353
           RM   G +  N VT  AVL ACAH+G  + G   H     M  E  +  G      ++D+
Sbjct: 352 RMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTS----IIDM 407

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           + + G +  A K   D + EK   + W+AM+    MH +    +EV
Sbjct: 408 YCKCGKVEMARKAF-DRMREKNVKS-WSAMVAGYGMHGHAKEALEV 451



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 168/334 (50%), Gaps = 21/334 (6%)

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS-VVAWNSMISGYEQNGFAKEAIG 193
           SG+     + A  V     SNN ++   +F++  DK+ V +WNS+I+   ++G + EA+ 
Sbjct: 80  SGFSKRRSICAGAVLRRRYSNNPNLT-TLFNKYVDKTNVFSWNSVIAELARSGDSVEALR 138

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
            F+ MR   + P+ +T  C + +C+ L D+  GR  H+  +  G + ++ ++++L++MY+
Sbjct: 139 AFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYS 198

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH--------GVR 305
           +CG +  AR +FD +S  N+++WT+MI+GY  +     A+ LF               V 
Sbjct: 199 KCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVC 258

Query: 306 PNNVTFVAVLSACAHAG--LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
            + +  V+VLSAC+      + EG   F   R   G L GVE+   ++D + + G L  +
Sbjct: 259 VDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDL-GVEN--TLMDAYAKCGELGVS 315

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY-- 421
            + V D + E+   + W +++     +      +E+  H +  + E   + V LS +   
Sbjct: 316 RR-VFDGMAERDVIS-WNSIIAVYAQNGMSTESMEIF-HRMVKDGEINYNAVTLSAVLLA 372

Query: 422 -ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
            A +G     + + + +I+ GL+ +V   T  +D
Sbjct: 373 CAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIID 406


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/547 (43%), Positives = 350/547 (63%), Gaps = 33/547 (6%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           +   + F +N++I   +++  S ++L  +  M   ++ P+  TF   IKSC+ L  L+ G
Sbjct: 36  VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 95

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR------------------------ 161
           R  H    + G++ DL V +ALV+ Y+K   +  AR                        
Sbjct: 96  RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 155

Query: 162 -------KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM-RDFGVNPDSTTCVCV 213
                  +VFD M ++ V++WNS+I+ Y QNG + E++ +F+ M +D  +N ++ T   V
Sbjct: 156 DDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAV 215

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           L ACA  G   LG+ +H+ ++  GL+ NV + TS+I+MY +CG V  AR+ FD M E NV
Sbjct: 216 LLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNV 275

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
            +W+AM++GYGMHG+  EA+E+F+ M   GV+PN +TFV+VL+AC+HAGL++EG   F +
Sbjct: 276 KSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKA 335

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
           M  E+ + PGVEH+ CMVDL GRAG L EA+  +K  +  +P   VW A+LGAC+MHKN 
Sbjct: 336 MSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKG-MKLRPDFVVWGALLGACRMHKNV 394

Query: 394 DLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEV 453
           DLG   A  L  ++P+N G+YV+LSNIYA AGR + VE +R +M   GL K  G+S V++
Sbjct: 395 DLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDI 454

Query: 454 DQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHS 513
             + ++F +GD+ HP   +IY+YL++L  + +E GYVP+  S +H++  EE+E  LR HS
Sbjct: 455 KGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHS 514

Query: 514 EKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGS 573
           EKLA+AFG+M T PG TI I+KNLR+C DCH+AIKFIS   +REI+VRD  RFHHF+ G 
Sbjct: 515 EKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGL 574

Query: 574 CSCLDYW 580
           CSC DYW
Sbjct: 575 CSCGDYW 581



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 163/311 (52%), Gaps = 27/311 (8%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCA 117
           A R+F  +   D   +N++I   ++   ST+S+  + RM+    I+ +  T SAV+ +CA
Sbjct: 161 ALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACA 220

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
           H     LG+ +H  V   G +S++ V  ++++ Y K   V++ARK FDRM +K+V +W++
Sbjct: 221 HSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSA 280

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWV----HEF 232
           M++GY  +G AKEA+ +F  M   GV P+  T V VLAAC+  G ++ G  W     HEF
Sbjct: 281 MVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEF 340

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV----IAWTAMISGYGMHGY 288
            V  G++        ++++  R G +   +E FD++  + +    + W A++    MH  
Sbjct: 341 DVEPGVE----HYGCMVDLLGRAGYL---KEAFDLIKGMKLRPDFVVWGALLGACRMHK- 392

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSAC-AHAGLVQEGHRVFASMRQEYGLL--PGVE 345
             +  E+  R +   + P N  +  +LS   A AG  ++  R+   M+   GL+  PG  
Sbjct: 393 NVDLGEISAR-KLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNS-GLVKPPGFS 450

Query: 346 HHVCMVDLFGR 356
               +VD+ GR
Sbjct: 451 ----LVDIKGR 457



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 147/282 (52%), Gaps = 43/282 (15%)

Query: 154 SNNVDVARKVFDRMPDKS-VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVC 212
           SNN ++   +F++  DK+ V +WNS+I+   ++G + EA+  F+ MR   + P+ +T  C
Sbjct: 23  SNNPNLT-TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPC 81

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
            + +C+ L D+  GR  H+  +  G + ++ ++++L++MY++CG +  AR +FD +S  N
Sbjct: 82  AIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRN 141

Query: 273 VIAWTAMISGY--------------GM-----------------HGYGTEAVELFHRMRA 301
           +++WT+MI+GY              GM                 +G  TE++E+FHRM  
Sbjct: 142 IVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVK 201

Query: 302 HG-VRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
            G +  N VT  AVL ACAH+G  + G   H     M  E  +  G      ++D++ + 
Sbjct: 202 DGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTS----IIDMYCKC 257

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           G +  A K   D + EK   + W+AM+    MH +    +EV
Sbjct: 258 GKVEMARKAF-DRMREKNVKS-WSAMVAGYGMHGHAKEALEV 297


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/575 (42%), Positives = 354/575 (61%), Gaps = 20/575 (3%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC--------IPSPDSF 72
           L  L Q+HA ++  G   +  +LTK  S   +   I YA    F          PS D+F
Sbjct: 31  LSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYDAF 90

Query: 73  LFNTLI-----IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
           LFNTLI      R+SK+N    S LFYR M+   ++P+ +TF  V+K CA +  L LG+ 
Sbjct: 91  LFNTLIRAYSQTRDSKSN----SFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKC 146

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYA--KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           VH  V   G++ D+HV   L++ Y     +  + A KVFD  P    V W++MI+G+ + 
Sbjct: 147 VHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRL 206

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G +  A+ LF  M+  GV PD  T V VL+ACA LG ++LG+WV  ++  + +  +V L 
Sbjct: 207 GCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELC 266

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
            +LI+M+A+CGNV KA ++F  M    +++WT++I+G  MHG G +AV LF  M  +G+ 
Sbjct: 267 NALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGIT 326

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           P++V F+ VLSAC+H+GLV +G   F SM + + ++P VEH+ CMVDL  R G + EA++
Sbjct: 327 PDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFE 386

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
           FV+ +  E P   +W  ++ AC       LG  +++ L+  EP +  +YV+LSNIYA   
Sbjct: 387 FVQKMPFE-PNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLR 445

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
           + ++   VR +M  +G+KK  G + +EV+ + Y F  GDKSH    EIY+ +DE+    +
Sbjct: 446 QWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIK 505

Query: 486 EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
           +AGYVP +   + +++EE++E +L  HSEKLA+AF L+ T PG +IRIVKNLR+C DCHS
Sbjct: 506 KAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCEDCHS 565

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           A KFIS   NREI+VRDR RFHHFK G CSC D+W
Sbjct: 566 ATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/578 (42%), Positives = 367/578 (63%), Gaps = 5/578 (0%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P   ++  +LKA   L  L+   +VH  +   G+     +   L++L    G I  A  +
Sbjct: 171 PDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAV 230

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +       + ++I   ++     ++L  +  M  +N+ P      +V+++   +  L
Sbjct: 231 FGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDL 290

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+++H  V   G + +  +  +L + YAK  +V VAR  F+++ + S++ WN+MISGY
Sbjct: 291 EHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGY 350

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            +NG+A+EAI LF LM+   + PDS T    +AACAQ+G ++L RW+ E+I       +V
Sbjct: 351 VKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDV 410

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           ++ TSLI+ YA+CG+V  AR +FD + + +V+ W+AM+ GYG+HG G E++ LFH MR  
Sbjct: 411 IVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQA 470

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV PN+VTFV +L+AC ++GLV+EG  +F  MR +YG+ P  +H+ C+VDL GRAG L+ 
Sbjct: 471 GVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMR-DYGIEPRHQHYACVVDLLGRAGHLDR 529

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           AY FV ++  E P  +VW A+L ACK+H++  LG   AE L S++P N GHYV LSN+YA
Sbjct: 530 AYNFVMNMPIE-PGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYA 588

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            +   D V  VR +M +KGL KH+GYS +E++ K   F  GDK+HP + EI++ +++L  
Sbjct: 589 SSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLER 648

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           R +EAG+VP +ES +H+L  EE E +L  HSE+LA+A+GL+ T PG T+RI KNLR C +
Sbjct: 649 RLKEAGFVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDN 708

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+AIK IS   +REI+VRD  RFHHFK G+CSC DYW
Sbjct: 709 CHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/559 (42%), Positives = 361/559 (64%), Gaps = 3/559 (0%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLL--SLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
            +Q+HA  I  G   +   + K L  +L+     ++YA +IF  I +P+ F +NT+I   
Sbjct: 56  FRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGY 115

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           +++     +L  YR+M VS I P  +T+  ++K+ A L  +  G  VH     +G++S +
Sbjct: 116 AESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLV 175

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            VQ  LV+ YA   + + A K+F+ M ++++V WNS+I+GY  NG   EA+ LF  M   
Sbjct: 176 FVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLR 235

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           GV PD  T V +L+ACA+LG + LGR  H ++V  GLD N+    +L+++YA+CG++ +A
Sbjct: 236 GVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQA 295

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
            ++FD M E +V++WT++I G  ++G+G EA+ELF  +   G+ P+ +TFV VL AC+H 
Sbjct: 296 HKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHC 355

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
           G+V EG   F  M++EYG++P +EH+ CMVDL GRAGL+ +A++F+++ +  +P   VW 
Sbjct: 356 GMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQN-MPMQPNAVVWR 414

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
            +LGAC +H +  LG      LL +EP++ G YV+LSN+YA   R   V  VR  M+++G
Sbjct: 415 TLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREG 474

Query: 442 LKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE 501
           +KK  G+S VE+  + + F MGD+SHP T EIY  L E+    +  GYVP   + + ++E
Sbjct: 475 VKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIE 534

Query: 502 EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
           EEE+E +L YHSEK+A+AF L+ T+ G+ IR+VKNLR+C DCH AIK IS   +REI+VR
Sbjct: 535 EEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVR 594

Query: 562 DRLRFHHFKRGSCSCLDYW 580
           DR RFHHFK G CSC DYW
Sbjct: 595 DRSRFHHFKDGHCSCKDYW 613


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/588 (40%), Positives = 347/588 (59%), Gaps = 36/588 (6%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           L Q+HA L   G      +  KL       G + Y+  +F    +P  F +  +I  ++ 
Sbjct: 46  LLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHAL 105

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
                 +L FY +M+   + P+ +TFS+++K C     +  G+A+H      G+DSDL+V
Sbjct: 106 RGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYV 161

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVA----------------------------- 174
           +  L++ YA+  +V  A+++FD MP+KS+V+                             
Sbjct: 162 RTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDG 221

Query: 175 --WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
             WN MI GY QNG   EA+ LF  M      P+  T + VL+AC QLG ++ GRWVH +
Sbjct: 222 VCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSY 281

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           I   G+  NV + T+L++MY++CG++  AR +FD + + +V+AW +MI GY MHG+  EA
Sbjct: 282 IENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEA 341

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           ++LF  M   G+ P N+TF+ +LSAC H+G V EG  +F  M+ EYG+ P +EH+ CMV+
Sbjct: 342 LQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVN 401

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L GRAG + +AY+ VK++  E P P +W  +LGAC++H    LG ++ E L+     N G
Sbjct: 402 LLGRAGHVEQAYELVKNMNIE-PDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSG 460

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
            Y++LSNIYA  G  D V  +R +M   G+KK  G S++EV+ K + F  G  +HP   E
Sbjct: 461 TYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKE 520

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           IY  L+E+ G  +  GY P+++  +H++ E E+E SL  HSEKLA+AFGL+ T PG TI+
Sbjct: 521 IYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIK 580

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           IVKNLR+C DCH   K IS  T R+I+VRDR RFHHF  GSCSC DYW
Sbjct: 581 IVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/571 (42%), Positives = 354/571 (61%), Gaps = 4/571 (0%)

Query: 13  AILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           A+L A   L+ L+   Q+    I  G+    S+LT L+SL    G +  A+ +F  I   
Sbjct: 36  AVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKK 95

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D    N +I   +    + DS+  ++ ++ S    S+ T   +I   +      L   +H
Sbjct: 96  DLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIH 155

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
                 G  S   V  AL   Y + N +  AR++FD   +K++ +WN+MISG  QNG   
Sbjct: 156 GFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTD 215

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
            AI LF  M+   VNP+  T   +L+ACAQ+G + LG WVH  I     + NV ++T+LI
Sbjct: 216 AAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALI 275

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           +MYA+CG+++ ARE+FD+M E N + W AMISGYG+HG+G EA++LF+ M +  V+P  +
Sbjct: 276 DMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGL 335

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           TF++VL AC+HAGLV+EG  +F +M  ++G  P  EH+ CMVD+ GRAG L +A +F+K 
Sbjct: 336 TFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKA 395

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
           +  E P P VW A+LGAC +HK+ +L    +E L  ++PEN G+YV++SNIY++  +  +
Sbjct: 396 MPVE-PGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQ 454

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
              VR +  +K L K  G + +E+ Q  ++F+ GD+SHP +  IY  LD+L G+  EAG+
Sbjct: 455 AASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGF 514

Query: 490 VPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKF 549
             E+ + +H+LEEEE+E +++ HSEKLA+AFGL+ T PG  IRI+KNLR+C+DCH+  KF
Sbjct: 515 QTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKF 574

Query: 550 ISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +S  T R I+VRD  RFHHFK G CSC DYW
Sbjct: 575 LSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 166/338 (49%), Gaps = 11/338 (3%)

Query: 89  DSLLFYRRMIVSNISPSNYT-FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL 147
           DS+  +  M++ N    + T   AV+ + A L  L LG  + C     G+ S + +   L
Sbjct: 13  DSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGL 72

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
           ++ ++K   V++AR +F  +  K +++ N+MISG+  NG  ++++ LF  +   G    S
Sbjct: 73  ISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSS 132

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
           +T V ++   +  G   L   +H F V  G+  +  ++T+L  +Y R   +  AR++FD 
Sbjct: 133 STIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDE 192

Query: 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG 327
            +E  + +W AMISG   +G    A+ LF  M+ + V PN VT  ++LSACA  G +  G
Sbjct: 193 SAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLG 252

Query: 328 ---HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
              H +  S R E      V     ++D++ + G +  A +   D++ EK     W AM+
Sbjct: 253 EWVHSLIKSNRFE----SNVYVSTALIDMYAKCGSITVARELF-DLMPEK-NEVTWNAMI 306

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
               +H +    +++   +LS     P     LS +YA
Sbjct: 307 SGYGLHGHGQEALKLFYDMLS-SSVKPTGLTFLSVLYA 343


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/488 (45%), Positives = 325/488 (66%), Gaps = 1/488 (0%)

Query: 93  FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYA 152
            + RMI  N+ P++ T  ++I SC  +  + LG+ +H ++  +G+   L +  ALV+ Y 
Sbjct: 219 LFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYG 278

Query: 153 KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVC 212
           K   +  AR +FD M +K V+ W +MIS Y Q      A  LF  MRD GV P+  T V 
Sbjct: 279 KCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVS 338

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
           +L+ CA  G +D+G+W H +I  QG++V+V+L T+LI+MYA+CG++S A+ +F    + +
Sbjct: 339 LLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRD 398

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           +  W  M++GYGMHGYG +A++LF  M   GV+PN++TF+  L AC+HAGLV EG  +F 
Sbjct: 399 ICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFE 458

Query: 333 SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKN 392
            M  ++GL+P VEH+ CMVDL GRAGLL+EAYK ++  +   P  A+W AML ACK+HKN
Sbjct: 459 KMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIES-MPVTPNIAIWGAMLAACKIHKN 517

Query: 393 FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVE 452
            ++G   A  LL++EP+N G+ V++SNIYA A R + V  +R  +   G+KK  G S++E
Sbjct: 518 SNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIE 577

Query: 453 VDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYH 512
           V+   + F MGD +HP   +I + L E+  + +EAGY+P++   +H ++EEE+E +L YH
Sbjct: 578 VNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYH 637

Query: 513 SEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRG 572
           SEKLA+AFGL+ T+PG  IR+VKNLR+C DCH+  K +S    R IIVRDR RFHHF+ G
Sbjct: 638 SEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREG 697

Query: 573 SCSCLDYW 580
           SCSC  YW
Sbjct: 698 SCSCGGYW 705



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 173/331 (52%), Gaps = 28/331 (8%)

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           S   ++ ++  + R++   +I   ++   +V+K+C+ +S+  +G+ +H     +G  SD+
Sbjct: 88  SHPRYALNTYTYMRKL---DIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDV 144

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ--NGFAKEAI------- 192
            V  AL+  Y++  ++  AR +FD+M ++ VV+W++MI  Y     GF++ +I       
Sbjct: 145 FVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMI 204

Query: 193 -------------GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
                         LF  M +  V P+  T + ++ +C  +G + LG+ +H +I+  G  
Sbjct: 205 AGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFG 264

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
           +++ LAT+L++MY +CG +  AR IFD M   +V+ WTAMIS Y        A +LF +M
Sbjct: 265 MSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQM 324

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
           R +GVRPN +T V++LS CA  G +  G + F +   + G+   V     ++D++ + G 
Sbjct: 325 RDNGVRPNELTMVSLLSLCAVNGALDMG-KWFHAYIDKQGVEVDVILKTALIDMYAKCGD 383

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           ++ A +   + I        W  M+    MH
Sbjct: 384 ISGAQRLFSEAIDRD--ICTWNVMMAGYGMH 412



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 139/264 (52%), Gaps = 2/264 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++HA+++  G+G S ++ T L+ +    G I  A+ IF  + + D   +  +I   ++A
Sbjct: 252 KRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQA 311

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           N    +   + +M  + + P+  T  +++  CA    L++G+  H ++   G + D+ ++
Sbjct: 312 NCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILK 371

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL++ YAK  ++  A+++F    D+ +  WN M++GY  +G+ ++A+ LF  M   GV 
Sbjct: 372 TALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVK 431

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKARE 263
           P+  T +  L AC+  G +  G+ + E ++   GL   V     ++++  R G + +A +
Sbjct: 432 PNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYK 491

Query: 264 IFDMMS-ELNVIAWTAMISGYGMH 286
           + + M    N+  W AM++   +H
Sbjct: 492 MIESMPVTPNIAIWGAMLAACKIH 515



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 30/289 (10%)

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+  +  MR   +  DS     VL AC+Q+    +G+ +H F V  GL  +V +  +L+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG--------------------- 289
           MY+ CG++  AR +FD MSE +V++W+ MI  Y    YG                     
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 290 -TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEHH 347
             E   LF RM    V PN++T ++++ +C   G VQ G R+ A  +R  +G+   +   
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGM--SLALA 270

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS-- 405
             +VD++G+ G +  A + + D +  K     WTAM+ A       D   ++   +    
Sbjct: 271 TALVDMYGKCGEIRSA-RAIFDSMKNKDV-MTWTAMISAYAQANCIDYAFQLFVQMRDNG 328

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           V P N    V L ++ A+ G +D  +     + ++G++  V   T  +D
Sbjct: 329 VRP-NELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALID 376


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/579 (41%), Positives = 362/579 (62%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKA--GPR-LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   + +IL A   P  LK  QQ+  H+I AGYG    + T LLS+    G +  A R
Sbjct: 410 EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHR 469

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  I   +   +N +I    +     ++L  ++ ++   I P++ TF++++  C     
Sbjct: 470 VFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDS 529

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L LG+ VH  +  +G +SDLHV  ALV+ +    ++  A+ +F+ MP + +V+WN++I+G
Sbjct: 530 LELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAG 589

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + Q+G  + A   F +M++ G+ PD  T   +L ACA    +  GR +H  I     D +
Sbjct: 590 FVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCD 649

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V++ T LI+MY +CG++  A ++F  + + NV +WT+MI+GY  HG G EA+ELF++M+ 
Sbjct: 650 VLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQ 709

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV+P+ +TFV  LSACAHAGL++EG   F SM+ E+ + P +EH+ CMVDLFGRAGLLN
Sbjct: 710 EGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAGLLN 768

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA +F+  +  E P   VW A+LGAC++H N +L  + A+  L ++P + G +V+LSNIY
Sbjct: 769 EAVEFIIKMQVE-PDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIY 827

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AG    V  +R +M+ +G+ K  G S +EVD K + F   DK+HP T EI+  L+ L 
Sbjct: 828 AAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLH 887

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              R+ GYVP++   +H++E+ E+E +L YHSE+LA+ +GL++T P   I I KNLR+C 
Sbjct: 888 MEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCG 947

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+A KFIS  T R+II RD  RFHHFK G CSC D+W
Sbjct: 948 DCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 234/454 (51%), Gaps = 9/454 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           Q +   Y A+L+   + K L   ++++ H+  +G      M   L+++    G    A++
Sbjct: 107 QIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQ 166

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF  +   D + +N L+    +     ++   + +M+  ++ P   TF +++ +CA    
Sbjct: 167 IFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARN 226

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           ++ GR ++  +  +G+D+DL V  AL+N + K  ++  A KVFD +P + +V W SMI+G
Sbjct: 227 VDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITG 286

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             ++G  K+A  LF  M + GV PD    V +L AC     ++ G+ VH  +   G D  
Sbjct: 287 LARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTE 346

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + + T++++MY +CG++  A E+FD++   NV++WTAMI+G+  HG   EA   F++M  
Sbjct: 347 IYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ PN VTF+++L AC+    ++ G ++   +  E G          ++ ++ + G L 
Sbjct: 407 SGIEPNRVTFMSILGACSSPSALKRGQQIQDHI-IEAGYGSDDRVRTALLSMYAKCGSLK 465

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLSN 419
           +A++  + +   K     W AM+ A   H+ +D  +   + LL   ++P N   +  + N
Sbjct: 466 DAHRVFEKI--SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILN 522

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEV 453
           +   +  ++  + V  ++++ GL+  +  S   V
Sbjct: 523 VCKSSDSLELGKWVHFLIMKAGLESDLHVSNALV 556



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 210/391 (53%), Gaps = 10/391 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP   A+ ++L+A    + L+Q   VHA +   G+     + T +LS+    G +  A  
Sbjct: 309 QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   +   +  +I   ++     ++ LF+ +MI S I P+  TF +++ +C+  S 
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSA 428

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +  H+  +GY SD  V+ AL++ YAK  ++  A +VF+++  ++VVAWN+MI+ 
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITA 488

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q+     A+  F  +   G+ P+S+T   +L  C     ++LG+WVH  I+  GL+ +
Sbjct: 489 YVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESD 548

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + ++ +L++M+  CG++  A+ +F+ M + ++++W  +I+G+  HG    A + F  M+ 
Sbjct: 549 LHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE 608

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G++P+ +TF  +L+ACA    + EG R+ A +  E      V     ++ ++ + G + 
Sbjct: 609 SGIKPDKITFTGLLNACASPEALTEGRRLHA-LITEAAFDCDVLVGTGLISMYTKCGSIE 667

Query: 362 EAYKFVKDVIGEKPAPAV--WTAMLGACKMH 390
           +A++    V  + P   V  WT+M+     H
Sbjct: 668 DAHQ----VFHKLPKKNVYSWTSMITGYAQH 694



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 117/395 (29%), Positives = 194/395 (49%), Gaps = 38/395 (9%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN 101
           MLT   S  C  G      R        D+   N ++ R SKA    +++    R+  S+
Sbjct: 52  MLTTSFSGRCPKG------RCVVFADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSH 105

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           I     T+SA+++ C     L  G  ++ H+  SG   D+ +   L+N YAK  N   A+
Sbjct: 106 IQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAK 165

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           ++FD M +K V +WN ++ GY Q+G  +EA  L   M    V PD  T V +L ACA   
Sbjct: 166 QIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADAR 225

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           ++D GR ++  I+  G D ++ + T+LINM+ +CG++  A ++FD +   +++ WT+MI+
Sbjct: 226 NVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMIT 285

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR------ 335
           G   HG   +A  LF RM   GV+P+ V FV++L AC H   +++G +V A M+      
Sbjct: 286 GLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDT 345

Query: 336 ----------------------QEYGLLPG--VEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
                                 + + L+ G  V     M+  F + G ++EA+ F   +I
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405

Query: 372 --GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
             G +P    + ++LGAC        G ++ +H++
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII 440


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/579 (41%), Positives = 362/579 (62%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKA--GPR-LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   + +IL A   P  LK  QQ+  H+I AGYG    + T LLS+    G +  A R
Sbjct: 410 EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHR 469

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  I   +   +N +I    +     ++L  ++ ++   I P++ TF++++  C     
Sbjct: 470 VFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDS 529

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L LG+ VH  +  +G +SDLHV  ALV+ +    ++  A+ +F+ MP + +V+WN++I+G
Sbjct: 530 LELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAG 589

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + Q+G  + A   F +M++ G+ PD  T   +L ACA    +  GR +H  I     D +
Sbjct: 590 FVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCD 649

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V++ T LI+MY +CG++  A ++F  + + NV +WT+MI+GY  HG G EA+ELF++M+ 
Sbjct: 650 VLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQ 709

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV+P+ +TFV  LSACAHAGL++EG   F SM+ E+ + P +EH+ CMVDLFGRAGLLN
Sbjct: 710 EGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAGLLN 768

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA +F+  +  E P   VW A+LGAC++H N +L  + A+  L ++P + G +V+LSNIY
Sbjct: 769 EAVEFIIKMQVE-PDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIY 827

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AG    V  +R +M+ +G+ K  G S +EVD K + F   DK+HP T EI+  L+ L 
Sbjct: 828 AAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLH 887

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              R+ GYVP++   +H++E+ E+E +L YHSE+LA+ +GL++T P   I I KNLR+C 
Sbjct: 888 MEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCG 947

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+A KFIS  T R+II RD  RFHHFK G CSC D+W
Sbjct: 948 DCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 234/454 (51%), Gaps = 9/454 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           Q +   Y A+L+   + K L   ++++ H+  +G      M   L+++    G    A++
Sbjct: 107 QIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQ 166

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF  +   D + +N L+    +     ++   + +M+  ++ P   TF +++ +CA    
Sbjct: 167 IFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARN 226

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           ++ GR ++  +  +G+D+DL V  AL+N + K  ++  A KVFD +P + +V W SMI+G
Sbjct: 227 VDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITG 286

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             ++G  K+A  LF  M + GV PD    V +L AC     ++ G+ VH  +   G D  
Sbjct: 287 LARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTE 346

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + + T++++MY +CG++  A E+FD++   NV++WTAMI+G+  HG   EA   F++M  
Sbjct: 347 IYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ PN VTF+++L AC+    ++ G ++   +  E G          ++ ++ + G L 
Sbjct: 407 SGIEPNRVTFMSILGACSSPSALKRGQQIQDHI-IEAGYGSDDRVRTALLSMYAKCGSLK 465

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLSN 419
           +A++  + +   K     W AM+ A   H+ +D  +   + LL   ++P N   +  + N
Sbjct: 466 DAHRVFEKI--SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILN 522

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEV 453
           +   +  ++  + V  ++++ GL+  +  S   V
Sbjct: 523 VCKSSDSLELGKWVHFLIMKAGLESDLHVSNALV 556



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 210/391 (53%), Gaps = 10/391 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP   A+ ++L+A    + L+Q   VHA +   G+     + T +LS+    G +  A  
Sbjct: 309 QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   +   +  +I   ++     ++ LF+ +MI S I P+  TF +++ +C+  S 
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSA 428

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +  H+  +GY SD  V+ AL++ YAK  ++  A +VF+++  ++VVAWN+MI+ 
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITA 488

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q+     A+  F  +   G+ P+S+T   +L  C     ++LG+WVH  I+  GL+ +
Sbjct: 489 YVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESD 548

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + ++ +L++M+  CG++  A+ +F+ M + ++++W  +I+G+  HG    A + F  M+ 
Sbjct: 549 LHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE 608

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G++P+ +TF  +L+ACA    + EG R+ A +  E      V     ++ ++ + G + 
Sbjct: 609 SGIKPDKITFTGLLNACASPEALTEGRRLHA-LITEAAFDCDVLVGTGLISMYTKCGSIE 667

Query: 362 EAYKFVKDVIGEKPAPAV--WTAMLGACKMH 390
           +A++    V  + P   V  WT+M+     H
Sbjct: 668 DAHQ----VFHKLPKKNVYSWTSMIAGYAQH 694



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/395 (29%), Positives = 195/395 (49%), Gaps = 38/395 (9%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN 101
           MLT   S  C  G      R        D+   N ++ R SKA    +++    R+  S+
Sbjct: 52  MLTTSFSGRCPKG------RCVVFADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSH 105

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           I     T+SA+++ C     L  G  ++ H+  SG   D+ ++  L+N YAK  N   A+
Sbjct: 106 IQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAK 165

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           ++FD M +K V +WN ++ GY Q+G  +EA  L   M    V PD  T V +L ACA   
Sbjct: 166 QIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADAR 225

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           ++D GR ++  I+  G D ++ + T+LINM+ +CG++  A ++FD +   +++ WT+MI+
Sbjct: 226 NVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMIT 285

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR------ 335
           G   HG   +A  LF RM   GV+P+ V FV++L AC H   +++G +V A M+      
Sbjct: 286 GLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDT 345

Query: 336 ----------------------QEYGLLPG--VEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
                                 + + L+ G  V     M+  F + G ++EA+ F   +I
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405

Query: 372 --GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
             G +P    + ++LGAC        G ++ +H++
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII 440


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/601 (38%), Positives = 359/601 (59%), Gaps = 36/601 (5%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           + +++     +  L Q+HA L+  G   +  +  KL       G +  +  +F     P+
Sbjct: 50  FASLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPN 109

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
            F F+ +I  + ++     +  +Y +M+   + P+ +TFS+V+KSC+    L  G+ +HC
Sbjct: 110 VFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHC 165

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS------------------- 171
                G  SDL+V+  LV+ YA+  +V  AR++FD+MP++S                   
Sbjct: 166 QAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDK 225

Query: 172 ------------VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
                       VV WN MI GY Q+G   E++ LF  M      P+  T + VL+AC Q
Sbjct: 226 ARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQ 285

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           LG ++ GRW+H +I  +G+ +NV + T+LI+MY++CG++  AR +FD + + +V+AW +M
Sbjct: 286 LGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSM 345

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           I GY MHG+   A++LF  M   G +P ++TF+ +LSAC H GLV+EG   F  MR +YG
Sbjct: 346 IVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYG 405

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           + P +EH+ CMV+L GRAG L EAY  VK++      P +W  +LG C++H N  LG E+
Sbjct: 406 IEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMT-IAADPVLWGTLLGCCRLHVNIKLGEEI 464

Query: 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYL 459
           A+ L+  +  N G YV+LSN+YA  G  + V  +R +M + G++K  G S++EVD K + 
Sbjct: 465 AKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHE 524

Query: 460 FSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALA 519
           F  G++ HP + EIY  L+E+    +  GY P+++  +H+L EE++E SL  HSEKLA+A
Sbjct: 525 FVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIA 584

Query: 520 FGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           FGL+ T PG T++IVKNLR+C DCH+ +K IS  T R+I++RDR RFHHF+ G CSC DY
Sbjct: 585 FGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDY 644

Query: 580 W 580
           W
Sbjct: 645 W 645


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/585 (40%), Positives = 368/585 (62%), Gaps = 7/585 (1%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           M ++    P  + IL+A   L  L Q+H H+I  G+  +  +LTK  S   +   I YA 
Sbjct: 1   MNHRAVEQPCLD-ILQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAM 59

Query: 61  RIFFCIPSP---DSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSC 116
            + F +      D+FLF+T+I   ++++ S  + +FY  +++   ISP+ Y F  V+K+C
Sbjct: 60  SLVFSVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKAC 119

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK-SNNVDVARKVFDRMPDKSVVAW 175
           A L  LNLG+AVH  +   G+D D+ VQ  +V+ Y   S  ++ ARK+FD MP    V W
Sbjct: 120 AGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTW 179

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
            +MI GY + G +  A+GLF  M+  GV PD  T V VL+AC  LG ++LG+W+  +I  
Sbjct: 180 TAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEK 239

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
           + +   V L+ +L++M+A+CG+V KA  +F  MS+  +++WT++I G  MHG G EAV L
Sbjct: 240 ERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSL 299

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355
           F  M+A G+ P ++ F+ +LSAC+H+GLV+ G + F+ M +++G++P +EH+ CMVDL  
Sbjct: 300 FEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLS 359

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415
           RAGL+ EA +FV+ +  E P P +W  ++ AC++H    LG  +++ L+  EP +  +YV
Sbjct: 360 RAGLVTEALEFVERMPIE-PNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYV 418

Query: 416 MLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQ 475
           +LSNIY      ++   +R  M +KG++K  G + +E+D + + F +GD+SH   NEI +
Sbjct: 419 LLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIK 478

Query: 476 YLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVK 535
            ++E+    + AGY P +     +++EE++E +L  HSEKLA+AF L+ T PG  IRI K
Sbjct: 479 MVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITK 538

Query: 536 NLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           NLR+C DCHSA KFIS   NREI++RDR RFHHF+ G CSC D+W
Sbjct: 539 NLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/561 (41%), Positives = 349/561 (62%), Gaps = 36/561 (6%)

Query: 52  DAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA 111
           D+G + YA+ +F  IP+P +F  N++I   +  N    ++LFY+ M++  + P  +TF +
Sbjct: 24  DSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPS 83

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           + KSC    +L  G+ +HCH    G+ SD ++Q  L+N Y+    +  ARKVFD+M +KS
Sbjct: 84  LFKSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKS 140

Query: 172 VVAWNSMISGYEQ---------------------------NGFAK-----EAIGLFNLMR 199
           VV+W +MI  Y Q                           NG  +     EA+ LFN M+
Sbjct: 141 VVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQ 200

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             GV  D  T   +L AC  LG ++LG+W+H +I  + ++V+V L T+L++MYA+CG++ 
Sbjct: 201 LSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIE 260

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            A  +F  M E +V+ WTA+I G  M G G +A+ELFH M+   V+P+ +TFV VL+AC+
Sbjct: 261 SAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACS 320

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           HAGLV EG   F SM  +YG+ P +EH+ CMVD+ GRAG + EA   +++ +   P   V
Sbjct: 321 HAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQN-MPMAPDYFV 379

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
              +L AC++H N  +    A+ L+ ++P+N G YV+LSNIY+     +  + +R +M++
Sbjct: 380 LVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVE 439

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           + +KK  G S +EV    + F  GD SHP ++EIY+ LD++M R + AGYVP+    + +
Sbjct: 440 RNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFD 499

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           ++E+E+E  L  HSEKLA+AFGL+ T+PG  IR+VKNLR+C DCHSA+KFIS   NREII
Sbjct: 500 MDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREII 559

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           VRDR RFHHF +GSCSC D+W
Sbjct: 560 VRDRNRFHHFTKGSCSCRDFW 580



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 94/236 (39%), Gaps = 46/236 (19%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L+ +    G I  A R+F  +P  D   +  LI+  +       +L  +  M +S + 
Sbjct: 247 TALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVK 306

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   TF  V+ +C+H  ++N G A                                    
Sbjct: 307 PDAITFVGVLAACSHAGLVNEGIA-----------------------------------Y 331

Query: 164 FDRMPDK-----SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
           F+ MP+K     S+  +  M+    + G   EA    +L+++  + PD    V +L+AC 
Sbjct: 332 FNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEA---EDLIQNMPMAPDYFVLVGLLSACR 388

Query: 219 QLGDIDLGRWVHEFIVGQGLDV-NVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
             G++ +     + ++   LD  N      L N+Y+   N   A+++ ++M E N+
Sbjct: 389 IHGNLVVAERAAQQLI--ELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNI 442


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/580 (40%), Positives = 363/580 (62%), Gaps = 6/580 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT---YAQR 61
           +P S +  +++     L+ L+Q+ A+ I   +  + ++LTKL++       I    +A R
Sbjct: 32  EPPSSSILSLIPKCTSLRELKQIQAYTI-KTHQNNPTVLTKLINFCTSNPTIASMDHAHR 90

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  IP PD  LFNT+    ++ +    ++L   +++ S + P +YTFS+++K+CA L  
Sbjct: 91  MFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKA 150

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +HC     G   +++V   L+N Y   N+VD AR+VFD++ +  VVA+N++I+ 
Sbjct: 151 LEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITS 210

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             +N    EA+ LF  +++ G+ P   T +  L++CA LG +DLGRW+HE++   G D  
Sbjct: 211 CARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQY 270

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V + T+LI+MYA+CG++  A  +F  M   +  AW+AMI  Y  HG+G++A+ +   M+ 
Sbjct: 271 VKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKK 330

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             V+P+ +TF+ +L AC+H GLV+EG+  F SM  EYG++P ++H+ CM+DL GRAG L 
Sbjct: 331 AKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLE 390

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA KF+ D +  KP P +W  +L +C  H N ++   V + +  ++  + G YV+LSN+ 
Sbjct: 391 EACKFI-DELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLC 449

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A  GR D V  +R +M+ KG  K  G S++EV+   + F  GD  H  +  ++  LDEL+
Sbjct: 450 ARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHALDELV 509

Query: 482 GRCREAGYVPESESAMH-ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
              + AGYVP++    + ++E+EE+E  LRYHSEKLA+ +GL+ T PG TIR+VKNLR+C
Sbjct: 510 KELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVC 569

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           VDCH+A KFIS+   R+II+RD  RFHHFK G CSC DYW
Sbjct: 570 VDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/599 (39%), Positives = 368/599 (61%), Gaps = 32/599 (5%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
           + L++   L  L+ +HAHLI A         + L+S+  +   + YA ++F+ I +P+ F
Sbjct: 20  SFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLF 79

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
           ++N+ I   S +     S  FY +   + + P N T+  ++K+C     L++G   H  +
Sbjct: 80  IYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQI 139

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS--------------- 177
              G+DSD++VQ +LV  Y+   ++  A  VF R+    VV+W S               
Sbjct: 140 IRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSAR 199

Query: 178 ----------------MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
                           MISGY +N F  +AI L+ L++  GV+ + T  V V+A+CA LG
Sbjct: 200 KLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLG 259

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            ++LG   H++I+   + VN++L T+L++MYARCG++ KA  +FD +   + ++WT +I+
Sbjct: 260 ALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIA 319

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           G+ MHGY  +A+E F RM   G+ P  +TF AVLSAC+H GLV+ G  +F SM+++Y + 
Sbjct: 320 GFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIE 379

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P +EH+ CMVDL GRAG L EA KFV + +  KP   +W A+LGAC++HKN ++     +
Sbjct: 380 PRLEHYGCMVDLLGRAGKLAEAEKFVNE-MPMKPNAPIWGALLGACRIHKNSEIAERAGK 438

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
            L+ ++PE+ G+YV+LSNIYA   + + VE +R +M ++G+ K  GY+  E+D K + F+
Sbjct: 439 TLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFT 498

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
           +GDK+HP   +I +  +E++G+ R AGY   ++ A+ +++EEE+E ++  HSEKLA+A+ 
Sbjct: 499 IGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLAIAYA 558

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +MRT     IRIVKNLR+C DCH+A K IS    RE+IVRDR RFHHFK G+CSC+DYW
Sbjct: 559 IMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/572 (41%), Positives = 355/572 (62%), Gaps = 5/572 (0%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLL---SLVCDAGFITYAQRIFFCIPSP 69
           ++L     L+ L+Q+ A  I        S+LTK +   SL      + +A  +F  IP P
Sbjct: 25  SLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQP 84

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D  LFNT+    ++ +    +   + +++ S + P +YTF +++K+CA    L  GR +H
Sbjct: 85  DIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLH 144

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
           C     G   +++V   L+N Y   N +D AR+VFD++ +  VV +N+MI+GY +     
Sbjct: 145 CLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPN 204

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           EA+ LF  ++   + P   T + VL++CA LG +DLG+W+HE++   G +  V + T+LI
Sbjct: 205 EALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALI 264

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           +MYA+CG++  A  +F+ M+  +  AW+AMI  Y +HG+G +AV LF  MR  G  P+ +
Sbjct: 265 DMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEI 324

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           TF+ +L AC+H GLV+EG   F  MR +YG++PG++H+ CMVDL GRAG L EAY+F+  
Sbjct: 325 TFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVG 384

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
            +  +P P +W  +L AC  H N +LG  V E +  ++  + G Y++LSN+ A AGR + 
Sbjct: 385 -LPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWED 443

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
           V  VR +M ++G+ K  G S+VEV+   + F  GD  H  + +++Q LDEL+   +  GY
Sbjct: 444 VNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGY 503

Query: 490 VPESESAMH-ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           VP +    H ++E+EE+E +LRYHSEKLA+ FGL+ T PG TIR+VKNLR+C DCHSA K
Sbjct: 504 VPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAK 563

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            IS+  +R+II+RD  RFHHFK G CSC DYW
Sbjct: 564 LISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/560 (41%), Positives = 348/560 (62%), Gaps = 38/560 (6%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G I ++  +F     PD FLF   I   S       + L Y +++ S I+P+ +TFS+++
Sbjct: 78  GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLL 137

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS-- 171
           KSC+  S    G+ +H HV   G   D +V   LV+ YAK  +V  A+KVFDRMP++S  
Sbjct: 138 KSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLV 193

Query: 172 -----------------------------VVAWNSMISGYEQNGFAKEAIGLFN-LMRDF 201
                                        +V+WN MI GY Q+GF  +A+ LF  L+ + 
Sbjct: 194 SSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEG 253

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
              PD  T V  L+AC+Q+G ++ GRW+H F+    + +NV + T LI+MY++CG++ +A
Sbjct: 254 KPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEA 313

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA-HGVRPNNVTFVAVLSACAH 320
             +F+     +++AW AMI+GY MHGY  +A+ LF+ M+   G++P ++TF+  L ACAH
Sbjct: 314 VLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAH 373

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
           AGLV EG R+F SM QEYG+ P +EH+ C+V L GRAG L  AY+ +K++  +  +  +W
Sbjct: 374 AGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADS-VLW 432

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
           +++LG+CK+H +F LG E+AE+L+ +  +N G YV+LSNIYA  G  + V  VRN+M +K
Sbjct: 433 SSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEK 492

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
           G+ K  G ST+E++ K + F  GD+ H  + EIY  L ++  R +  GYVP + + + +L
Sbjct: 493 GIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDL 552

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
           EE E+E SL+ HSE+LA+A+GL+ T PG  ++I KNLR+C DCH+  K IS  T R+I++
Sbjct: 553 EETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVM 612

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RDR RFHHF  GSCSC D+W
Sbjct: 613 RDRNRFHHFTDGSCSCGDFW 632


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/593 (39%), Positives = 351/593 (59%), Gaps = 34/593 (5%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           +  L+Q H+ +I  G       + +++    +  +G + YA  +F  IP PD++++NT+ 
Sbjct: 33  MAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIF 92

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
               +   + + +  Y RM+  ++SP+ +T+  +I++C     +  G+ +H HV   G+ 
Sbjct: 93  RGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 152

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK--------- 189
           +D      L++ Y    +++ AR+VFD MP + VV+W S+I+GY Q GF           
Sbjct: 153 ADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELM 212

Query: 190 ----------------------EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
                                 EA  LF+ MR   V  D      +L+AC  LG ++ G+
Sbjct: 213 PERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGK 272

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
           W+H +I   G++++  LAT++I+MY +CG + KA E+F+ + +  + +W  MI G  MHG
Sbjct: 273 WIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHG 332

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
            G  A+ELF  M    V P+ +TFV VLSACAH+GLV+EG   F  M +  GL PG+EH 
Sbjct: 333 KGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHF 392

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
            CMVDL GRAGLL EA K + + +   P   V  A++GAC++H N +LG ++ + ++ +E
Sbjct: 393 GCMVDLLGRAGLLEEARKLINE-MPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELE 451

Query: 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSH 467
           P N G YV+L+N+YA AGR + V  VR +M  +G+KK  G+S +E +     F  G ++H
Sbjct: 452 PHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAH 511

Query: 468 PNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSP 527
           P   EIY  LDE++   R  GYVP+++  +H+++EEE+E  L YHSEKLA+AFGL++T P
Sbjct: 512 PQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKP 571

Query: 528 GMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           G T+RI KNLR+C DCH A K IS   +REII+RDR RFHHF+ G CSC DYW
Sbjct: 572 GETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/528 (45%), Positives = 346/528 (65%), Gaps = 8/528 (1%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+R F  IP P+  +   +     + N    SL  +R MI S+ +      +A++   A 
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 119 LSILNLGRAVHCHVFVS--GYDSDLHVQAALVNFYAK--SNNVDVARKVFDRMPDKSVVA 174
             + + G     H  ++  G++ +  V   +++ YAK  S +++VARKVFD M ++ VV+
Sbjct: 63  ARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVS 121

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFG--VNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           WNSMI+ Y QNG + EAIGL++ M + G  +  ++     VL ACA  G I  G+ +H  
Sbjct: 122 WNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQ 181

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           +V  GL+ NV + TS+++MY++CG V  A   F  + E N+++W+AMI+GYGMHG G EA
Sbjct: 182 VVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEA 241

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           +E+F  M+  G+RPN +TF++VL+AC+HAGL+ EG   + +M+QE+G+  GVEH+ CMVD
Sbjct: 242 LEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVD 301

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L GRAG L+EAY  +K+ +  KP  A+W A+L AC++HKN +L     + L  ++  N G
Sbjct: 302 LLGRAGCLDEAYSLIKE-MKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSG 360

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
           +YV+LSNIYA AG    VE +R ++  + ++K  GYS+ E+  K YLF +GDKSHP   E
Sbjct: 361 YYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIE 420

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           IY YL++L+ R +EAGYVP + S +H+L+EEE+E +LR HSEKLA+AF LM + P   I 
Sbjct: 421 IYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIH 480

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           I+KNLR+C DCH+A+KFI+  T REII+RD  RFHHFK G CSC DYW
Sbjct: 481 IIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/557 (43%), Positives = 345/557 (61%), Gaps = 1/557 (0%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           ++QVHA +   G      +  KLL +      +  A  +F  +   D   ++ +I    K
Sbjct: 19  IKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVK 78

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
                     +R +I +   P N++   VIK+C     L +GR +H  V  +G   D  V
Sbjct: 79  NGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFV 138

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
            + LV+ YAK   +D A+++FDRMP K +V    MI+GY + G   E+  LF+ MR  G 
Sbjct: 139 CSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGF 198

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            PD    V ++ ACA+LG ++  R VH+++  +   ++V L T++I+MYA+CG++  +RE
Sbjct: 199 VPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSRE 258

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           IFD M + NVI+W+AMI  YG HG G EA+ELFH M   G+ PN +TF+++L AC+HAGL
Sbjct: 259 IFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGL 318

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           V +G ++F+ M   YG+ P V+H+ CMVDL GRAG L++A + ++++  EK    +W A 
Sbjct: 319 VDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKD-EGIWCAF 377

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           LGAC++H+  DL  + A+ LLS++ +NPGHY++LSNIYA AGR   V  +RN+M ++ LK
Sbjct: 378 LGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLK 437

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K  GY+ +EVD   Y F  GD SH  +NEIY+ L  L  +   AGYVP++ S +H+++EE
Sbjct: 438 KIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEE 497

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
            +   L  HSEKLA+AFGL+ T  G  IRI KNLR+C DCHS  K +S  T R+IIVRD 
Sbjct: 498 VKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDA 557

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFHHFK G CSC DYW
Sbjct: 558 NRFHHFKEGICSCGDYW 574


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/591 (42%), Positives = 361/591 (61%), Gaps = 36/591 (6%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCD-AGFITYAQRIFFCIPS--PDSFLFNTLIIR 80
           L+QVHA +I      S   LT++  LVC       YAQ+IF C+    P++F++N+ +  
Sbjct: 44  LRQVHAQIIKTNAPLSILPLTRV-GLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKA 102

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            ++ +   D+++ + R+   ++ P  +T S+V+++C +L  L+ GR +H  V   G+ S+
Sbjct: 103 LAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSN 162

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN------------------------ 176
           L++Q  +V+ YA    +  AR +F++MP + VV WN                        
Sbjct: 163 LYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPE 222

Query: 177 -------SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
                  SMI+GY Q G AKEAI LF  M + GV  +  T V VLAACA LG +DLG  +
Sbjct: 223 RNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRI 282

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           HE+    G   NV ++ +LI+MY +CG + +A ++F+ M E  V++W+AMI G  MHG  
Sbjct: 283 HEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRA 342

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
            EA+ LF  M   G+ PN VTF+ +L AC+H GL+ EG R FASM ++YG++P +EH+ C
Sbjct: 343 EEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGC 402

Query: 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
           MVDL  RAGLL+EA++F+ + +  KP   VW A+LGAC++HKN ++  E  +HLL ++P 
Sbjct: 403 MVDLLSRAGLLHEAHEFILN-MPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPL 461

Query: 410 NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPN 469
           N G+YV+LSNIYA AGR +    VR  M  + +KK  G+S++ VD   + F  G++SHP+
Sbjct: 462 NDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPD 521

Query: 470 TNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGM 529
           T +I+Q  +EL+   R  GYVP +   + ++EE E+   +  HSEKLAL FGLM T    
Sbjct: 522 TEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAET 581

Query: 530 TIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            IRI+KNLR+C DCHSA K IS   NREI+VRDR RFH F   SCSC DYW
Sbjct: 582 PIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/595 (40%), Positives = 363/595 (61%), Gaps = 43/595 (7%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           L Q+HA L+  G      +  KL       G + ++  +F   P+P+ FL+  +I  ++ 
Sbjct: 39  LLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAH 98

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
            +    +L +Y +M+   I P+ +T S+++K+C     L+  RAVH H    G  S L+V
Sbjct: 99  FDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKFGLSSHLYV 154

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKS-------------------------------V 172
              LV+ YA+  +V  A+K+FD MP++S                               V
Sbjct: 155 STGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDV 214

Query: 173 VAWNSMISGYEQNGFAKEAIGLFN-------LMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           V WN MI GY Q+G   EA+  F           +  V P+  T V VL++C Q+G ++ 
Sbjct: 215 VCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALEC 274

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+WVH ++   G+ VNV + T+L++MY +CG++  AR++FD+M   +V+AW +MI GYG+
Sbjct: 275 GKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGI 334

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           HG+  EA++LFH M   GV+P+++TFVAVL+ACAHAGLV +G  VF SM+  YG+ P VE
Sbjct: 335 HGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVE 394

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ CMV+L GRAG + EAY  V+ +  E P P +W  +L AC++H N  LG E+AE L+S
Sbjct: 395 HYGCMVNLLGRAGRMQEAYDLVRSMEVE-PDPVLWGTLLWACRIHSNVSLGEEIAEILVS 453

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
               + G YV+LSN+YA A     V  VR++M   G++K  G S++EV  + + F  GD+
Sbjct: 454 NGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDR 513

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
            HP + +IY  L+++ G  +E  Y P++++ +H++ E+E+E SL  HSEKLALAFGL+ T
Sbjct: 514 RHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLIST 573

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           SPG  I+IVKNLR+C+DCH+ +K +S  + R+II+RDR RFHHF+ GSCSC DYW
Sbjct: 574 SPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/582 (41%), Positives = 367/582 (63%), Gaps = 5/582 (0%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           + K+P S    +IL A   +  L+    +H + + AG+    ++ T L+ +    G +  
Sbjct: 270 EGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGT 329

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+ IF  +       +N++I    +      ++  +++M+   +  +N T    + +CA 
Sbjct: 330 ARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACAD 389

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L  +  GR VH  +      SD+ V  +L++ Y+K   VD+A ++F+ +  K++V+WN+M
Sbjct: 390 LGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAM 449

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           I GY QNG   EAI  F  M+   + PDS T V V+ A A+L  +   +W+H  ++   L
Sbjct: 450 ILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCL 509

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           D NV +AT+L++MYA+CG V  AR++FDMM E +V  W AMI GYG HG G  A+ELF +
Sbjct: 510 DKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEK 569

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M+   ++PN VTF+ VLSAC+H+GLV+EG + F SM+++YGL P ++H+  MVDL GRA 
Sbjct: 570 MKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRAN 629

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
            LNEA+ F++ +  E PA +V+ AMLGAC++HKN +LG + A  +  ++P++ G++V+L+
Sbjct: 630 RLNEAWDFIQKMPIE-PAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLA 688

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           NIYA A   D+V  VR  M +KG++K  G+S VE+  + + F  G  SHP   +IY +L+
Sbjct: 689 NIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLE 748

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
            L  R + AGY+P++ S +H++E+  +E  L  HSEKLA+AF L+ TSPG TI + KNLR
Sbjct: 749 TLGNRIKAAGYMPDTNS-VHDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLR 807

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+A K+IS+ T REIIVRD  RFHHFK G+CSC DYW
Sbjct: 808 VCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/470 (30%), Positives = 243/470 (51%), Gaps = 19/470 (4%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           +L+    +K L Q    +I  G        TKL+SL C  G +  A R+F  I      L
Sbjct: 83  LLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDEL 142

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           ++T++   ++ +   D++ F+ RM    + P  Y F+ ++K C   + L  G+ +HC + 
Sbjct: 143 YHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLI 202

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
           V+G+ S++     +VN YAK   V+ A K+FDRMP++ +V WN++ISGY QNGF K A+ 
Sbjct: 203 VNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALE 262

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           L   M++ G  PDS T V +L A A +G + +GR +H + +  G +  V ++T+L++MY+
Sbjct: 263 LVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYS 322

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +CG+V  AR IFD M+   V++W +MI GY  +G    A+E+F +M    V   NVT + 
Sbjct: 323 KCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMG 382

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
            L ACA  G V++G R    +  +  L   V     ++ ++ +   ++ A +  +++  +
Sbjct: 383 ALHACADLGDVEQG-RFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENL--Q 439

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSNIYALA--GRMDR 429
                 W AM+     +   +   E  ++   ++ +N  P  + M+S I ALA    + +
Sbjct: 440 HKTLVSWNAMILGYAQNGRIN---EAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQ 496

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVD---------QKNYLFSMGDKSHPNT 470
            + +  ++I+  L K+V  +T  VD             LF M D+ H  T
Sbjct: 497 AKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTT 546


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/546 (42%), Positives = 343/546 (62%), Gaps = 1/546 (0%)

Query: 35  GYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFY 94
           G+     +LT L+S+      +  A+ +F  I  PD   +N LI   S    +  ++ ++
Sbjct: 234 GFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYF 293

Query: 95  RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154
           R ++VS    S+ T   +I   +    L+L   +      SG      V  AL   Y++ 
Sbjct: 294 RELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRL 353

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
           N +D+AR++FD   +K+V AWN+MISGY Q+G  + AI LF  M      P+  T   +L
Sbjct: 354 NEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSIL 413

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
           +ACAQLG +  G+ VH+ I  + L+ N+ ++T+LI+MYA+CGN+S+A ++FD+ SE N +
Sbjct: 414 SACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTV 473

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
            W  MI GYG+HGYG EA++LF+ M   G +P++VTF++VL AC+HAGLV+EG  +F +M
Sbjct: 474 TWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAM 533

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
             +Y + P  EH+ CMVD+ GRAG L +A +F++ +  E P PAVW  +LGAC +HK+ +
Sbjct: 534 VNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVE-PGPAVWGTLLGACMIHKDTN 592

Query: 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           L    +E L  ++P N G+YV+LSNIY++     +   VR  + ++ L K  G + +EV+
Sbjct: 593 LARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVN 652

Query: 455 QKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSE 514
              ++F  GD+SH  T  IY  L+EL G+ RE GY  E+ +A+H++EEEE+E     HSE
Sbjct: 653 GTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSE 712

Query: 515 KLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSC 574
           KLA+AFGL+ T PG  IRI+KNLR+C+DCH+A KFIS  T R I+VRD  RFHHFK G C
Sbjct: 713 KLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGIC 772

Query: 575 SCLDYW 580
           SC DYW
Sbjct: 773 SCGDYW 778



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 225/450 (50%), Gaps = 21/450 (4%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
           A++        L + HA LI  GY    + +TKL   + D G   +A+ +FF +P PD F
Sbjct: 13  ALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIF 72

Query: 73  LFNTLIIRNSKANFSTD--SLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           LFN LI      +FS D  S+ FY  ++  + +SP N+T++  I +       NLG  +H
Sbjct: 73  LFNVLI---KGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDD---NLGMCLH 126

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
            H  V G+DS+L V +ALV+ Y K + V  ARKVFD+MPD+  V WN+MI+G  +N    
Sbjct: 127 AHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYD 186

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           +++ +F  M   GV  DSTT   VL A A++ ++ +G  +    +  G   +  + T LI
Sbjct: 187 DSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLI 246

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           +++++C +V  AR +F M+ + +++++ A+ISG+  +G    AV+ F  +   G R ++ 
Sbjct: 247 SVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSS 306

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV----EHHVCMVDLFGRAGLLNEAYK 365
           T V ++   +       GH   A   Q + +  G          +  ++ R   ++ A +
Sbjct: 307 TMVGLIPVSS-----PFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQ 361

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE-PENPGHYVMLSNIYALA 424
              D   EK   A W AM+         ++ + + + +++ E   NP     + +  A  
Sbjct: 362 LF-DESSEKTV-AAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQL 419

Query: 425 GRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           G +   + V  ++  K L++++  ST  +D
Sbjct: 420 GALSFGKSVHQLIKSKNLEQNIYVSTALID 449


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/546 (43%), Positives = 347/546 (63%), Gaps = 1/546 (0%)

Query: 35  GYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFY 94
           G+     ++T L  L    G I  A+ +F  I  PD   +N +I   +  N +  S+  +
Sbjct: 237 GFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLF 296

Query: 95  RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154
           + ++VS    ++ +   +I        L+L R +H     SG  S+  V  AL   Y++ 
Sbjct: 297 KELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRL 356

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
           N ++ AR +FD   +KS+ +WN+MISGY QNG  ++AI LF  M+   V P+  T   +L
Sbjct: 357 NEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSIL 416

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
           +ACAQLG + LG+WVH+ I  +  + N+ ++T+LI+MYA+CG++++A+ +F MM E N +
Sbjct: 417 SACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAV 476

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
            W AMISGYG+HGYG EA+ LF+ M    V P  VTF++VL AC+HAGLV+EG  +F SM
Sbjct: 477 TWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSM 536

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
             ++G  P  EH+ CMVDL GRAG L++A  F++ +  E P P VW A+LGAC +HK+ +
Sbjct: 537 VHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVE-PGPPVWGALLGACMIHKDAN 595

Query: 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           L    ++ L  ++P+N G+YV+LSNIY+          VR ++ ++ L K  G + +EV 
Sbjct: 596 LARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVA 655

Query: 455 QKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSE 514
              ++F+ GD+SHP    IY  L++L G+ REAG+  E+ +A+H++EEEE+E  ++ HSE
Sbjct: 656 NTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSE 715

Query: 515 KLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSC 574
           KLA+AFGL+ + PG  IRI+KNLR+C+DCH+A KFIS  T R I+VRD  RFHHFK G C
Sbjct: 716 KLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGIC 775

Query: 575 SCLDYW 580
           SC DYW
Sbjct: 776 SCGDYW 781



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 181/359 (50%), Gaps = 3/359 (0%)

Query: 32  IVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSL 91
           IVAG+G    + + +++       +  A+++F  +   D+ L+NT++    K +   +++
Sbjct: 133 IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAI 192

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
           L +  M+   I   + T +AV+   A L  L LG  + C     G+ S  +V   L   Y
Sbjct: 193 LIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLY 252

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
           +K   ++ AR +F ++    +V++N+MISGY  N   + ++ LF  +   G   +S++ V
Sbjct: 253 SKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIV 312

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
            ++      G + L R +H F    G+  N  ++T+L  +Y+R   +  AR +FD  SE 
Sbjct: 313 GLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEK 372

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           ++ +W AMISGY  +G   +A+ LF  M+   VRPN VT  ++LSACA  G +  G  V 
Sbjct: 373 SLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVH 432

Query: 332 ASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
             + +E      +     ++D++ + G + EA +    ++ EK A   W AM+    +H
Sbjct: 433 DLINRE-SFESNIFVSTALIDMYAKCGSITEAQRLF-SMMPEKNA-VTWNAMISGYGLH 488



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 207/455 (45%), Gaps = 39/455 (8%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L  L Q HA +I+ G       +TKL   +     I  A  +F  IP+PD FL+N LI  
Sbjct: 23  LHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRA 82

Query: 81  NSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
            S  N  + ++  Y  +  S  + P N+T++ VI   + L +  L  A      V+G+ S
Sbjct: 83  FSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHS---IVAGFGS 139

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           DL V +A+V  Y K + V  ARKVFD M ++  V WN+M+SG  +N    EAI +F  M 
Sbjct: 140 DLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMV 199

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+  DSTT   VL   A+L D+ LG  +    +  G   +  + T L  +Y++CG + 
Sbjct: 200 KGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIE 259

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV----- 314
            AR +F  + + +++++ AMISGY  +     +V LF  +   G + N+ + V +     
Sbjct: 260 TARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFF 319

Query: 315 ------LSACAHAGLVQ----EGHRVFASMRQEYGLLPGVEHHV---------------C 349
                 L+ C H    +        V  ++   Y  L  +E                   
Sbjct: 320 PFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNA 379

Query: 350 MVDLFGRAGLLNEAYKFVKDV--IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
           M+  + + GL  +A    +++     +P P   T++L AC       LG  V + L++ E
Sbjct: 380 MISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHD-LINRE 438

Query: 408 PENPGHYV--MLSNIYALAGRMDRVEVVRNIMIQK 440
                 +V   L ++YA  G +   + + ++M +K
Sbjct: 439 SFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK 473


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/569 (40%), Positives = 339/569 (59%), Gaps = 36/569 (6%)

Query: 43  LTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI 102
           L KL       G + Y+  +F    +P  F +  +I  ++       +L FY +M+   +
Sbjct: 12  LDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGV 71

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
            P+ +TFS+++K C     +  G+A+H      G+DSDL+V+  L++ YA+  +V  A++
Sbjct: 72  EPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQ 127

Query: 163 VFDRMPDKSVVA-------------------------------WNSMISGYEQNGFAKEA 191
           +FD MP+KS+V+                               WN MI GY QNG   EA
Sbjct: 128 LFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEA 187

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           + LF  M      P+  T + VL+AC QLG ++ GRWVH +I   G+  NV + T+L++M
Sbjct: 188 LVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDM 247

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           Y++CG++  AR +FD + + +V+AW +MI GY M G+  EA++LF  M   G+ P N+TF
Sbjct: 248 YSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITF 307

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           + +LSAC H+G V EG  +F  M+ EYG+ P +EH+ CMV+L GRAG + +AY+ VK++ 
Sbjct: 308 IGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMN 367

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
            E P P +W  +LGAC++H    LG ++ E L+     N G Y++LSNIYA  G  D V 
Sbjct: 368 IE-PDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVA 426

Query: 432 VVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVP 491
            +R +M   G+KK  G S++EV+ K + F  G  +HP   EIY  L+E+ G  +  GY P
Sbjct: 427 RLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTP 486

Query: 492 ESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFIS 551
           +++  +H++ E E+E SL  HSEKLA+AFGL+ T PG TI+IVKNLR+C DCH   K IS
Sbjct: 487 QTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLIS 546

Query: 552 VATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             T R+I+VRDR RFHHF  GSCSC DYW
Sbjct: 547 KITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 162/328 (49%), Gaps = 37/328 (11%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           +P++  + +ILK  P ++P + +H+  +  G+     + T LL +    G +  AQ++F 
Sbjct: 72  EPNAFTFSSILKLCP-IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD 130

Query: 65  CIPSP-------------------------------DSFLFNTLIIRNSKANFSTDSLLF 93
            +P                                 D   +N +I   ++     ++L+ 
Sbjct: 131 TMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVL 190

Query: 94  YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153
           +RRM+ +   P+  T  +V+ +C  L  L  GR VH ++  +G   ++HV  ALV+ Y+K
Sbjct: 191 FRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSK 250

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
             +++ AR VFD++ DK VVAWNSMI GY   GF++EA+ LF  M   G++P + T + +
Sbjct: 251 CGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGI 310

Query: 214 LAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKAREIFDMMS-EL 271
           L+AC   G +  G  +   +  + G++  +     ++N+  R G+V +A E+   M+ E 
Sbjct: 311 LSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEP 370

Query: 272 NVIAWTAMISGYGMHG---YGTEAVELF 296
           + + W  ++    +HG    G + VEL 
Sbjct: 371 DPVLWGTLLGACRLHGKIALGEKIVELL 398



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 113/277 (40%), Gaps = 47/277 (16%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+     ++L A  +L  L+    VH+++   G   +  + T L+ +    G +  A+ 
Sbjct: 200 KPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARL 259

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  I   D   +N++I+  +   FS ++L  ++ M    + P+N TF  ++ +C H   
Sbjct: 260 VFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGW 319

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK-----SVVAWN 176
           +             G+D                        +F++M D+      +  + 
Sbjct: 320 V-----------TEGWD------------------------IFNKMKDEYGIEPKIEHYG 344

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
            M++   + G  ++A   + L+++  + PD      +L AC   G I LG  + E +V Q
Sbjct: 345 CMVNLLGRAGHVEQA---YELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQ 401

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
            L  N      L N+YA  GN      +  MM +  V
Sbjct: 402 NL-ANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGV 437


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/619 (40%), Positives = 356/619 (57%), Gaps = 40/619 (6%)

Query: 1   MKNKQPHSP---AYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAG 54
           M ++ P  P    +  ++KA   L+ L   +  H  +I    G    +L  L+      G
Sbjct: 126 MLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCG 185

Query: 55  FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
            +    R+F  IP  D   +N++I    +     ++L  ++ M   N+ P+  T   V+ 
Sbjct: 186 ELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLS 245

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV- 173
           +CA  S    GR VH ++  +     L +  A+++ Y K  +V+ A+++FD+MP+K +V 
Sbjct: 246 ACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVS 305

Query: 174 ------------------------------AWNSMISGYEQNGFAKEAIGLFN-LMRDFG 202
                                         AWN++IS YEQ G  KEA+ LF+ L     
Sbjct: 306 WTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKT 365

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
             PD  T V  L+ACAQLG +DLG W+H +I  QG+ +N  L TSLI+MY +CG++ KA 
Sbjct: 366 AKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKAL 425

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
            +F  +   +V  W+AMI+G  MHG+G +A+ LF +M+   V+PN VTF  +L AC+H G
Sbjct: 426 MVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVG 485

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           LV+EG   F  M   YG+LPGV+H+ CMVD+ GRAGLL EA + ++  +   PA +VW A
Sbjct: 486 LVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEK-MPMAPAASVWGA 544

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LGAC +H+N  L  +    L+ +EP N G YV+LSNIYA AG+ DRV  +R +M   GL
Sbjct: 545 LLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGL 604

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
           KK  G S++EVD   + F +GD SHP+  +IY  LDE++ R    GYVP     +  +EE
Sbjct: 605 KKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEE 664

Query: 503 EE-REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
           E+ +E +L  HSEKLA+AFGL+ T     IRIVKNLR+C DCHS  K +S   +REI++R
Sbjct: 665 EDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLR 724

Query: 562 DRLRFHHFKRGSCSCLDYW 580
           DR RFHHF+ G CSC+DYW
Sbjct: 725 DRYRFHHFREGHCSCMDYW 743



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 209/404 (51%), Gaps = 38/404 (9%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFLFNTLII 79
           K L+Q+HA ++  G        ++L++    + F  + YAQ++F  IP P+ + +NTLI 
Sbjct: 49  KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIR 108

Query: 80  RNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
             + ++    SLL + RM+  S   P  +TF  +IK+ + L  L  G+A H  V      
Sbjct: 109 AYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLG 168

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
           SD+ +  +L++FYAK   + +  +VF  +P + VV+WNSMI+ + Q G  +EA+ LF  M
Sbjct: 169 SDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEM 228

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
               V P+  T V VL+ACA+  D + GRWVH +I    +  ++ L+ ++++MY +CG+V
Sbjct: 229 ETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSV 288

Query: 259 SKAREIFDMMSELNVIAWT-------------------------------AMISGYGMHG 287
             A+ +FD M E ++++WT                               A+IS Y   G
Sbjct: 289 EDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCG 348

Query: 288 YGTEAVELFHRMR-AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
              EA+ELFH ++ +   +P+ VT V+ LSACA  G +  G  +   ++++ G+      
Sbjct: 349 KPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQ-GMKLNCHL 407

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
              ++D++ + G L +A      V  E+    VW+AM+    MH
Sbjct: 408 TTSLIDMYCKCGDLQKALMVFHSV--ERKDVFVWSAMIAGLAMH 449


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/579 (40%), Positives = 354/579 (61%), Gaps = 4/579 (0%)

Query: 5   QPHSPAYEAILKA--GPRLKPL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + ++L A   P L  + Q+VH  +  AG      + T L+ +    G I+ AQ 
Sbjct: 194 KPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQV 253

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF  +P  +   +  LI   ++      +L    +M  + ++P+  T++++++ C     
Sbjct: 254 IFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLA 313

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ VH ++  SGY  ++ V  AL+  Y K   +  ARK+F  +P + VV W +M++G
Sbjct: 314 LEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTG 373

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q GF  EAI LF  M+  G+ PD  T    L +C+    +  G+ +H+ +V  G  ++
Sbjct: 374 YAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLD 433

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V L ++L++MYA+CG++  AR +F+ MSE NV+AWTAMI+G   HG   EA+E F +M+ 
Sbjct: 434 VYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKK 493

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G++P+ VTF +VLSAC H GLV+EG + F SM  +YG+ P VEH+ C VDL GRAG L 
Sbjct: 494 QGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLE 553

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA   +   +  +P P+VW A+L AC++H + + G   AE++L ++P++ G YV LSNIY
Sbjct: 554 EAENVIL-TMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIY 612

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AGR +  E VR +M ++ + K  G S +EVD K ++F + DKSHP   EIY  L +L 
Sbjct: 613 AAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLT 672

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            + +E GYVP++   +H+++EE++  +L  HSE+LA+ +GLM+T PG  IRIVKNLR+C 
Sbjct: 673 EQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVCG 732

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+A KFIS    REII RD  RFHHF  G CSC D+W
Sbjct: 733 DCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 234/459 (50%), Gaps = 8/459 (1%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           ++  + +S  +  +L+   RL+ L+Q   VHA ++ +G   +R +   LLS+    G +T
Sbjct: 89  LQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLT 148

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A+R+F  I   +   +  +I      N + ++   Y  M ++   P   TF +++ +  
Sbjct: 149 DARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFT 208

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
           +  +L +G+ VH  +  +G + +  V  +LV  YAK  ++  A+ +FD++P+K+VV W  
Sbjct: 209 NPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTL 268

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +I+GY Q G    A+ L   M+   V P+  T   +L  C     ++ G+ VH +I+  G
Sbjct: 269 LIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSG 328

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
               + +  +LI MY +CG + +AR++F  +   +V+ WTAM++GY   G+  EA++LF 
Sbjct: 329 YGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFR 388

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
           RM+  G++P+ +TF + L++C+    +QEG  +   +    G    V     +V ++ + 
Sbjct: 389 RMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHA-GYSLDVYLQSALVSMYAKC 447

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL--LSVEPENPGHYV 415
           G +++A + V + + E+   A WTAM+  C  H      +E  E +    ++P+      
Sbjct: 448 GSMDDA-RLVFNQMSERNVVA-WTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTS 505

Query: 416 MLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           +LS    +    +  +  R++ +  G+K  V + +  VD
Sbjct: 506 VLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVD 544



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 157/299 (52%), Gaps = 9/299 (3%)

Query: 89  DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
           ++L     MI+      +  F  +++ CA L  L  GR VH  +  SG   + +++  L+
Sbjct: 79  EALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLL 138

Query: 149 NFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
           + YAK  ++  AR+VFD + D+++V+W +MI  +       EA   +  M+  G  PD  
Sbjct: 139 SMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKV 198

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           T V +L A      + +G+ VH  I   GL++   + TSL+ MYA+CG++SKA+ IFD +
Sbjct: 199 TFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKL 258

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
            E NV+ WT +I+GY   G    A+EL  +M+   V PN +T+ ++L  C     ++ G 
Sbjct: 259 PEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGK 318

Query: 329 RVFASMRQE-YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAML 384
           +V   + Q  YG    V +   ++ ++ + G L EA K    + G+ P   V  WTAM+
Sbjct: 319 KVHRYIIQSGYGREIWVVN--ALITMYCKCGGLKEARK----LFGDLPHRDVVTWTAMV 371



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 141/281 (50%), Gaps = 15/281 (5%)

Query: 139 SDLHVQAALVNFYAKSNNVDVARKV------FDRMPDKS------VVAWNSMISGYEQNG 186
           + L    +++ F    +NVD A ++       D++P  +       +A +  +S   + G
Sbjct: 16  TQLRCGRSILMFNRYQSNVDTAFELTTPTVSHDQLPGNAGFRKVDTLANSGDVSILCKQG 75

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
             KEA+G+ N M   G    S     +L  CA+L  ++ GR VH  I+  G+  N  L  
Sbjct: 76  RLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLEN 135

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           +L++MYA+CG+++ AR +FD + + N+++WTAMI  +       EA + +  M+  G +P
Sbjct: 136 TLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKP 195

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           + VTFV++L+A  +  L+Q G +V   + +  GL         +V ++ + G +++A + 
Sbjct: 196 DKVTFVSLLNAFTNPELLQVGQKVHMEIAKA-GLELEPRVGTSLVGMYAKCGDISKA-QV 253

Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
           + D + EK     WT ++         D+ +E+ E +   E
Sbjct: 254 IFDKLPEKNV-VTWTLLIAGYAQQGQVDVALELLEKMQQAE 293


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 246/611 (40%), Positives = 359/611 (58%), Gaps = 37/611 (6%)

Query: 6   PHSPAYEAILKAGPRLK---PLQQVHAHLIVAGY-----------------GRSRSM--- 42
           P+S  +  +LK+  +LK     QQ+H H++  GY                 GR +     
Sbjct: 101 PNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKV 160

Query: 43  -----------LTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSL 91
                       T L++     G+I  AQ++F  IP  D   +N +I   +    + ++L
Sbjct: 161 FDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEAL 220

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
             ++ M+ +N+ P   T   V+ +CA    + LGR VH  +   G  S+L +  AL++ Y
Sbjct: 221 DLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLY 280

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
           +K   V+ A  +F  + +K V++WN+MI GY      KEA+ LF  M   G NP+  T +
Sbjct: 281 SKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTML 340

Query: 212 CVLAACAQLGDIDLGRWVHEFIVG--QGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
            +L ACAQLG ID GRW+H +I    +G+     L TSLI+MYA+CG++  A ++F+ M 
Sbjct: 341 SILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMH 400

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
              + A  AMI G+ MHG    A ++F RMR +G+ P+++TFV +LSAC+H+G++  G R
Sbjct: 401 HRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRR 460

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
           +F SM Q Y + P +EH+ CM+DL G  GL  EA + +  +  E P   +W ++L ACKM
Sbjct: 461 IFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTME-PDGVIWCSLLKACKM 519

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           H N +LG   A+ L+ +EPENPG YV+LSNIYA AGR + V  +R ++  KG+KK  G S
Sbjct: 520 HGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCS 579

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
           ++E+D   + F +GDK HP   EIY  L+E+     EAG+VP++   + E+EEE ++ +L
Sbjct: 580 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGAL 639

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
           R+HSEKLA+AFGL+ T PG  + IVKNLR+C +CH A K IS    REII RDR RFHHF
Sbjct: 640 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHF 699

Query: 570 KRGSCSCLDYW 580
           + G CSC DYW
Sbjct: 700 RDGVCSCNDYW 710



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 198/388 (51%), Gaps = 35/388 (9%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL-VCDAGF--ITYAQRIFFCIPSP 69
           ++L     L+ L+ +HA +I  G   +   L++LL   +    F  + YA  +F  I  P
Sbjct: 7   SLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEP 66

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           +  ++NT+   ++ ++    ++  Y  MI   + P++YTF  ++KSCA L +   G+ +H
Sbjct: 67  NLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIH 126

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNN-------------------------------VD 158
            HV   GY+ DL+V  +L++ Y K+                                 ++
Sbjct: 127 GHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIE 186

Query: 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
            A+K+FD +P K VV+WN++ISGY   G  KEA+ LF  M    V PD +T V V++ACA
Sbjct: 187 SAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACA 246

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
           Q G I LGR VH +I   GL  N+ +  +LI++Y++CG V  A  +F  +S  +VI+W  
Sbjct: 247 QSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNT 306

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           MI GY       EA+ LF  M   G  PN+VT +++L ACA  G +  G  +   + +  
Sbjct: 307 MIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRI 366

Query: 339 -GLLPGVEHHVCMVDLFGRAGLLNEAYK 365
            G+         ++D++ + G +  A++
Sbjct: 367 KGVTNASSLRTSLIDMYAKCGDIEAAHQ 394


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/528 (44%), Positives = 345/528 (65%), Gaps = 8/528 (1%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+R F  IP P+  +   +     + N    SL  +R MI S+ +      +A++   A 
Sbjct: 148 ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 207

Query: 119 LSILNLGRAVHCHVFVS--GYDSDLHVQAALVNFYAK--SNNVDVARKVFDRMPDKSVVA 174
             + + G     H  ++  G++ +  V   +++ YAK  S +++VARKVFD M ++ VV+
Sbjct: 208 ARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVS 266

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFG--VNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           WNSMI+ Y QNG + EAIGL++ M + G  +  ++     VL ACA  G I  G+ +H  
Sbjct: 267 WNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQ 326

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           +V  GL+ NV + TS+++MY++CG V  A   F  + E N+++W+AMI+GYGMHG G EA
Sbjct: 327 VVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEA 386

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           +E+F  M+  G+RPN +TF++VL+AC+HAGL+ EG   + +M+QE+G+  GVEH+ CMVD
Sbjct: 387 LEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVD 446

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L GRAG L+EAY  +K+ +  KP  A+W A+L AC++HKN +L     + L  ++  N G
Sbjct: 447 LLGRAGCLDEAYSLIKE-MKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSG 505

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
           +YV+LSNIYA A     VE +R ++  + ++K  GYS+ E+  K YLF +GDKSHP   E
Sbjct: 506 YYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIE 565

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           IY YL++L+ R +EAGYVP + S +H+L+EEE+E +LR HSEKLA+AF LM + P   I 
Sbjct: 566 IYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIH 625

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           I+KNLR+C DCH+A+KFI+  T REII+RD  RFHHFK G CSC DYW
Sbjct: 626 IIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 673



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 140/279 (50%), Gaps = 11/279 (3%)

Query: 128 VHCHVFVSG-YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
           +H     SG + SD +  +AL++ Y   +    AR+ FD +PD + V   +M SGY +N 
Sbjct: 115 LHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNN 174

Query: 187 FAKEAIGLFNLM--RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
               ++ LF  M   D     D    +   +A A++ D  +   +H  I   G + N  +
Sbjct: 175 LVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGV 234

Query: 245 ATSLINMYARCG--NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR-- 300
             ++++ YA+ G  ++  AR++FD M E +V++W +MI+ Y  +G   EA+ L+ +M   
Sbjct: 235 VNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNV 293

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G++ N V   AVL ACAHAG +Q G R+   + +  GL   V     +VD++ + G +
Sbjct: 294 GGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVR-MGLEENVYVGTSIVDMYSKCGRV 352

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
             A +  +  I EK   + W+AM+    MH      +E+
Sbjct: 353 EMASRAFRK-IKEKNILS-WSAMITGYGMHGRGQEALEI 389


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/591 (41%), Positives = 363/591 (61%), Gaps = 16/591 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
            P+   +   +K+   L  L   +Q+H    V GYG    + + L+ +    G++  A++
Sbjct: 83  HPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARK 142

Query: 62  IFFCIPSPDSFLFNTLI---IRNSKAN---FSTDSLLF-----YRRMIVSNISPSNYTFS 110
           +F  IP  +   + ++I   ++N +A    F     L      Y  ++   +   +    
Sbjct: 143 LFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLG 202

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
            VI +CA + + ++   VH      G++  L V   L++ YAK   + V+RKVFD M + 
Sbjct: 203 CVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEET 262

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWV 229
            V +WNS+I+ Y QNG + EA  LF+ M   G V  ++ T   VL ACA  G + +G+ +
Sbjct: 263 DVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCI 322

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           H+ +V   L+ N+V+ TS+++MY +CG V  AR+ FD +   NV +WT M++GYGMHG+G
Sbjct: 323 HDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHG 382

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
            EA+++F+ M   G++PN +TFV+VL+AC+HAGL++EG   F  M+ E+ + PG+EH+ C
Sbjct: 383 KEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSC 442

Query: 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
           MVDL GRAG L EAY  +++ +  KP   VW ++LGAC++HKN +LG   A  L  ++P 
Sbjct: 443 MVDLLGRAGYLKEAYGLIQE-MKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPS 501

Query: 410 NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPN 469
           N G+YV+LSNIYA AGR D VE +R +M   GL K  GYS VE   + ++F +GDK HP 
Sbjct: 502 NCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQ 561

Query: 470 TNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGM 529
             +IY+YLDEL  + +E GY+P   S +++++ EE+   LR HSEKLA+AFG+M + PG 
Sbjct: 562 HEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGS 621

Query: 530 TIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            I+I+KNLR+C DCH AIK IS   NREI++RD  RFHHFK G CSC DYW
Sbjct: 622 VIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 183/334 (54%), Gaps = 21/334 (6%)

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           + +N++I   +++  S  +L  +  M   ++ P+  TF   IKSC+ L  L  G+ +H  
Sbjct: 52  YSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQ 111

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
            FV GY SD+ V +AL++ Y+K   ++ ARK+FD +P+++VV+W SMISGY QN  A+EA
Sbjct: 112 AFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREA 171

Query: 192 IGLFN--LMRD---------FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           + LF   L+ D          GV  DS    CV++ACA++    +   VH   V +G + 
Sbjct: 172 VFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEG 231

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
            + +  +L++ YA+CG +S +R++FD M E +V +W ++I+ Y  +G   EA  LF  M 
Sbjct: 232 CLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMV 291

Query: 301 AHG-VRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
             G VR N VT  AVL ACAH+G +Q G   H     M  E  L+ G      +VD++ +
Sbjct: 292 KRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTS----IVDMYCK 347

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            G +  A K   D +  K   + WT M+    MH
Sbjct: 348 CGRVEMARKAF-DRLKRKNVKS-WTVMVAGYGMH 379



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 166/322 (51%), Gaps = 51/322 (15%)

Query: 161 RKVFDRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           R +F +  DK SV +WNS+I+ + ++G + +A+  F+ MR   ++P+ +T  C + +C+ 
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 220 LGDIDLGRWVHE--FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
           L D+  G+ +H+  F+ G G D+ V  A++LI+MY++CG ++ AR++FD + E NV++WT
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFV--ASALIDMYSKCGYLNDARKLFDEIPERNVVSWT 156

Query: 278 AMISGYGMHGYGTEAVELFH-----------RMRAHGVRPNNVTFVAVLSACA------- 319
           +MISGY  +    EAV LF             +   GV  ++V    V+SACA       
Sbjct: 157 SMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSV 216

Query: 320 ----HAGLVQEGHR----VFASMRQEYG----------LLPGVEH-HVC----MVDLFGR 356
               H   V++G      V  ++   Y           +  G+E   VC    ++ ++ +
Sbjct: 217 TECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQ 276

Query: 357 AGLLNEAYKFVKDVI--GEKPAPAV-WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GL  EA+    D++  GE    AV  +A+L AC       +G  + + ++ +E E+  +
Sbjct: 277 NGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELED--N 334

Query: 414 YVMLSNIYALAGRMDRVEVVRN 435
            V+ ++I  +  +  RVE+ R 
Sbjct: 335 LVVGTSIVDMYCKCGRVEMARK 356


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/528 (44%), Positives = 346/528 (65%), Gaps = 8/528 (1%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A++ F  IPSP+  +   +     + N    SL  +R++I S  + +    +A++   A 
Sbjct: 144 ARKAFDEIPSPNPVIITAMASGYVRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSAS 203

Query: 119 LSILNLG--RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV--ARKVFDRMPDKSVVA 174
             I + G   ++H  V  +G D D  V   +++ YAK    D+  ARKVFD M +K VV+
Sbjct: 204 ARIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVS 262

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFG--VNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           WNSMI+ Y QNG + +A+GL+  M +    +  ++ T   +L ACA  G I  G+ +H  
Sbjct: 263 WNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQ 322

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           +V  GL+ NV + TS+++MY++CG V  AR+ F  + E N+++W+AMI+GYGMHG+G EA
Sbjct: 323 VVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEA 382

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           +++F+ M   G  PN +TF++VL+AC+HAGL+ +G   + +M++ +G+ PGVEH+ CMVD
Sbjct: 383 LDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVD 442

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L GRAG L+EAY  +K+ +  KP  A+W A+L AC++HKN +L    A+ L  ++  N G
Sbjct: 443 LLGRAGCLDEAYGLIKE-MKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELDATNCG 501

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
           +YV+LSNIYA AG    VE +R ++  +G++K  GYS+VE+  + +LF +GDKSHP   E
Sbjct: 502 YYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKE 561

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           IY YL +L+ + +EAGYVP + S +H+L+EEE+  +L  HSEKLA+AF LM + PG  I 
Sbjct: 562 IYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIH 621

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           ++KNLR+C DCH+AIK I+    REIIVRD  RFHHFK GSCSC DYW
Sbjct: 622 VIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKDGSCSCGDYW 669



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 167/340 (49%), Gaps = 15/340 (4%)

Query: 125 GRAVHCHVFVSG-YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
           GR +H     SG + SD    +AL++ Y   +    ARK FD +P  + V   +M SGY 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 184 QNGFAKEAIGLFNLMRDFG--VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           +N     ++ LF  +   G     D    +   +A A++ D  +   +H  +V  GLD +
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 242 VVLATSLINMYARCG--NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
             +  ++++ YA+ G  ++  AR++FD M E +V++W +MI+ Y  +G   +A+ L+ +M
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRKM 286

Query: 300 R--AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
              +  ++ N VT  A+L ACAHAG +Q G +   +     GL   V     +VD++ + 
Sbjct: 287 LNVSGSIKCNAVTLSAILLACAHAGTIQTG-KCIHNQVVRMGLEENVYVGTSVVDMYSKC 345

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           G +  A K  +  I EK   + W+AM+    MH +    +++   +     +NP +   +
Sbjct: 346 GRVEMARKAFQK-IKEKNILS-WSAMITGYGMHGHGQEALDIFNEMCR-SGQNPNYITFI 402

Query: 418 SNIYAL--AGRMDRVEVVRNIMIQK-GLKKHVGYSTVEVD 454
           S + A   AG +D+     N M ++ G++  V +    VD
Sbjct: 403 SVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVD 442



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 108/260 (41%), Gaps = 20/260 (7%)

Query: 226 GRWVHEFIVGQGL-DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
           GR +H   +  GL   +   A++L++MY  C     AR+ FD +   N +  TAM SGY 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG-HRVFASMRQEYGLLPG 343
            +     ++ LF ++ A G         A+++  A A +   G      ++  + GL   
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 344 VEHHVCMVDLFGRAGL--LNEAYKFV----KDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
                 M+D + + G   L  A K      KDV+        W +M+     +      +
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGAARKVFDTMEKDVVS-------WNSMIALYAQNGMSADAL 280

Query: 398 EVAEHLLSVEPENPGHYVMLSNIY---ALAGRMDRVEVVRNIMIQKGLKK--HVGYSTVE 452
            +   +L+V      + V LS I    A AG +   + + N +++ GL++  +VG S V+
Sbjct: 281 GLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVD 340

Query: 453 VDQKNYLFSMGDKSHPNTNE 472
           +  K     M  K+     E
Sbjct: 341 MYSKCGRVEMARKAFQKIKE 360


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/560 (42%), Positives = 358/560 (63%), Gaps = 2/560 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L   ++VHA  +  G+    ++ T +L + C  G +  A+++F  +   +S  +N +I  
Sbjct: 343 LGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKG 402

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            ++   +T++L  ++RM+   +  ++ +  A + +C  L  L+ GR VH  +   G +S+
Sbjct: 403 YAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESN 462

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           ++V  AL+  Y K    D+A +VFD +  K+ V+WN+MI G  QNG +++A+ LF+ M+ 
Sbjct: 463 VNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQL 522

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
             V PDS T V ++ A A + D    RW+H + +   LD +V + T+LI+MYA+CG VS 
Sbjct: 523 ENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSI 582

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           AR +F+   + +VI W AMI GYG HG G  AVELF  M++ G  PN  TF++VLSAC+H
Sbjct: 583 ARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSH 642

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
           AGLV EG   F+SM+++YGL PG+EH+  MVDL GRAG L+EA+ F++ +  E P  +V+
Sbjct: 643 AGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPME-PGISVY 701

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
            AMLGACK+HKN +L  E A+ +  +EPE   ++V+L+NIYA A     V  VR  M +K
Sbjct: 702 GAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKK 761

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
           GL+K  G+S V++  + + F  G  +H    +IY  L +L+   +  GYVP+++S +H++
Sbjct: 762 GLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDS-IHDV 820

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
           E++ +   L  HSEKLA+A+GL+RT+PG TI+I KNLR+C DCH+A K IS+ T REII+
Sbjct: 821 EDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDCHNATKLISLVTGREIIM 880

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RD  RFHHFK G CSC DYW
Sbjct: 881 RDIQRFHHFKDGKCSCGDYW 900



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 116/333 (34%), Positives = 178/333 (53%), Gaps = 5/333 (1%)

Query: 100 SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV 159
           S   P   TF++++K CA  + L  GRAVH  +   G   +     AL N YAK      
Sbjct: 219 SGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGD 278

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVNPDSTTCVCVLAACA 218
           AR+VFDRMP +  VAWN++++GY +NG A+ A+G+   M++  G  PD+ T V VL ACA
Sbjct: 279 ARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACA 338

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
               +   R VH F V  G D  V ++T+++++Y +CG V  AR++FD M + N ++W A
Sbjct: 339 DAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNA 398

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           MI GY  +G  TEA+ LF RM   GV   +V+ +A L AC   G + EG RV   +    
Sbjct: 399 MIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVH-ELLVRI 457

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
           GL   V     ++ ++ +    + A + V D +G K   + W AM+  C  + + +  V 
Sbjct: 458 GLESNVNVMNALITMYCKCKRTDLAAQ-VFDELGYKTRVS-WNAMILGCTQNGSSEDAVR 515

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
           +    + +E   P  + ++S I ALA   D ++
Sbjct: 516 LFSR-MQLENVKPDSFTLVSIIPALADISDPLQ 547



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 228/503 (45%), Gaps = 33/503 (6%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + VHA L   G        T L ++         A+R+F  +P+ D   +N L+   ++ 
Sbjct: 245 RAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARN 304

Query: 85  NFSTDSLLFYRRMIVSNIS-PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
             +  ++    RM   +   P   T  +V+ +CA    L   R VH      G+D  ++V
Sbjct: 305 GLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNV 364

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             A+++ Y K   VD ARKVFD M D++ V+WN+MI GY +NG A EA+ LF  M   GV
Sbjct: 365 STAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGV 424

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           +    + +  L AC +LG +D GR VHE +V  GL+ NV +  +LI MY +C     A +
Sbjct: 425 DVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQ 484

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +FD +     ++W AMI G   +G   +AV LF RM+   V+P++ T V+++ A A    
Sbjct: 485 VFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISD 544

Query: 324 VQE-----GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
             +     G+ +   + Q+  +L        ++D++ + G ++ A               
Sbjct: 545 PLQARWIHGYSIRLHLDQDVYVL------TALIDMYAKCGRVSIARSLFNS--ARDRHVI 596

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL--AGRMDRVEVVRNI 436
            W AM+     H +  + VE+ E + S   + P     LS + A   AG +D  +   + 
Sbjct: 597 TWNAMIHGYGSHGSGKVAVELFEEMKS-SGKVPNETTFLSVLSACSHAGLVDEGQEYFSS 655

Query: 437 MIQK-GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE--------LMGRC--- 484
           M +  GL+  + +    VD    L     K H   + I +   E        ++G C   
Sbjct: 656 MKEDYGLEPGMEHYGTMVD----LLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLH 711

Query: 485 REAGYVPESESAMHELEEEEREY 507
           +      ES   + ELE EE  Y
Sbjct: 712 KNVELAEESAQRIFELEPEEGVY 734


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/568 (42%), Positives = 360/568 (63%), Gaps = 10/568 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTK-----LLSLVCDAGFITYAQRIFFCIPSP-DSFLF 74
           +  L+Q+HA  I  G   S + L K     L+SL      ++YA ++F  I  P + F++
Sbjct: 30  ITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPP-MSYAHKVFSKIEKPINVFIW 88

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           NTLI   ++   S  +   YR M VS  + P  +T+  +IK+   ++ + LG  +H  V 
Sbjct: 89  NTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVI 148

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            SG+ S ++VQ +L++ YA   +V  A KVFD+MP+K +VAWNS+I+G+ +NG  +EA+ 
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALA 208

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           L+  M   G+ PD  T V +L+ACA++G + LG+ VH +++  GL  N+  +  L+++YA
Sbjct: 209 LYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA-HGVRPNNVTFV 312
           RCG V +A+ +FD M + N ++WT++I G  ++G+G EA+ELF  M +  G+ P  +TFV
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFV 328

Query: 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372
            +L AC+H G+V+EG   F  MR+EY + P +EH  CMVDL  RAG + +AY+++K  + 
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKS-MP 387

Query: 373 EKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432
            +P   +W  +LGAC +H + DL       +L +EP + G YV+LSN+YA   R   V+ 
Sbjct: 388 MQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQK 447

Query: 433 VRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPE 492
           +R  M++ G+KK  G+S VEV  + + F MGDKSHP ++ IY  L E+ GR R  GYVP+
Sbjct: 448 IRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQ 507

Query: 493 SESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISV 552
             +   ++EEEE+E ++ YHSEK+A+AF L+ T     I +VKNLR+C DCH AIK +S 
Sbjct: 508 ISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSK 567

Query: 553 ATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             NREI+VRDR RFHHFK GSCSC DYW
Sbjct: 568 VYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/582 (40%), Positives = 358/582 (61%), Gaps = 4/582 (0%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           K+ Q     + ++LKA  R+K L   +QVHA ++ +G+  +  +   L+ +  + G I  
Sbjct: 115 KSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGV 174

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+ +F  +P      +N+++   +K     + +  +R+++   I   + T  +V+ +C  
Sbjct: 175 ARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGR 234

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L+ L +G  +  ++   G   +  +  +L++ YAK   VD ARK+FD M  + VVAW++M
Sbjct: 235 LANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAM 294

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           ISGY Q    KEA+ LF+ M+   V P+  T V VL +CA LG  + G+WVH +I  + +
Sbjct: 295 ISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKM 354

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
            + V L T LI+ YA+CG + ++ E+F  MS  NV  WTA+I G   +G G  A+E F  
Sbjct: 355 KLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSS 414

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M  + V+PN+VTF+ VLSAC+HA LV +G  +F SMR+++ + P +EH+ CMVD+ GRAG
Sbjct: 415 MLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAG 474

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
            L EAY+F+ D +   P   VW  +L +C+ HKN ++  +  EH+  +EP + G Y++LS
Sbjct: 475 FLEEAYQFI-DNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLS 533

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           N YAL GR++    VR+++ +K +KK  G S +E+D   + F   D  H ++ EI+  LD
Sbjct: 534 NTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALD 593

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           ++M + +  GYVP ++ A  E EEE +E S+ +HSEKLA+A+GL+RTSP  TIRI KNLR
Sbjct: 594 KMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLR 653

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           MC DCH+A KFIS    R IIVRDR RFHHFK G CSC DYW
Sbjct: 654 MCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 136/388 (35%), Positives = 217/388 (55%), Gaps = 20/388 (5%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLS---------LVCDAGFI 56
           P +P    IL+     K LQQVHAHL+     ++R +L  +++         L+ D   I
Sbjct: 20  PENPK-SLILQQCKTPKDLQQVHAHLL-----KTRRLLDPIITEAVLESAALLLPDT--I 71

Query: 57  TYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC 116
            YA  IF  I  P+S  +N +I   +      ++LL +++M   ++    +TFS+V+K+C
Sbjct: 72  DYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKAC 131

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
           + +  L  G  VH  +  SG+ S+  V+  L+  YA    + VAR VFD MP++S+VAWN
Sbjct: 132 SRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWN 191

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
           SM+SGY +NG   E + LF  + +  +  D  T + VL AC +L ++++G  + E+IV +
Sbjct: 192 SMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSK 251

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
           GL  N  L TSLI+MYA+CG V  AR++FD M + +V+AW+AMISGY       EA+ LF
Sbjct: 252 GLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLF 311

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
           H M+   V PN VT V+VL +CA  G  + G  V   ++++   L  V     ++D + +
Sbjct: 312 HEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLT-VTLGTQLIDFYAK 370

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            G ++ + +  K++  +      WTA++
Sbjct: 371 CGYIDRSVEVFKEMSFKN--VFTWTALI 396


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/562 (41%), Positives = 358/562 (63%), Gaps = 10/562 (1%)

Query: 28   HAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFS 87
            H    V G+     + + L+ +    G +  A+ +F  IP  +   + ++I    +   +
Sbjct: 2038 HQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQA 2097

Query: 88   TDSLLFYRRMIV--------SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             ++LL ++  +         +N+   +    +V+ +C+ +S   +   VH  V   G+D 
Sbjct: 2098 DNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDG 2157

Query: 140  DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN-LM 198
             + V   L++ YAK     V++KVFD M +K  ++WNSMI+ Y Q+G + EA+ +F+ ++
Sbjct: 2158 SIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMV 2217

Query: 199  RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
            R  GV  ++ T   VL ACA  G +  G+ +H+ ++   L+ NV + TS+I+MY +CG V
Sbjct: 2218 RHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRV 2277

Query: 259  SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
              A++ FD M E NV +WTAM++GYGMHG   EA+++F++M   GV+PN +TFV+VL+AC
Sbjct: 2278 EMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAAC 2337

Query: 319  AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
            +HAGLV+EG   F +M+ +Y + PG+EH+ CMVDLFGRAG LNEAY  +K  +  KP   
Sbjct: 2338 SHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKR-MKMKPDFV 2396

Query: 379  VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
            VW ++LGAC++HKN DLG   A+ L  ++P+N G+YV+LSN+YA AGR   VE +R +M 
Sbjct: 2397 VWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMK 2456

Query: 439  QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
             + L K  G+S VE+  + ++F +GDK HP+   IY+YL++L    ++ GYVP   S +H
Sbjct: 2457 NRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLH 2516

Query: 499  ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
            +++EEE+E  LR HSEKLA+AFG+M ++PG TI I+KNLR+C DCH+ IK IS   +R+ 
Sbjct: 2517 DVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDF 2576

Query: 559  IVRDRLRFHHFKRGSCSCLDYW 580
            +VRD  RFHHFK G CSC DYW
Sbjct: 2577 VVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/412 (32%), Positives = 223/412 (54%), Gaps = 41/412 (9%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           +L+     K L+Q+HA +I +G    + +  KL+ L    G I YA  +F+ I +P +F 
Sbjct: 33  LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFT 92

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N +I  N+    S  +L+ Y+ M+   I+   +TF  VIK+C +   ++LG+ VH  + 
Sbjct: 93  WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLI 152

Query: 134 VSGYDSDLHVQAALVNFYAKSN-------------------------------NVDVARK 162
             G+  D+ VQ  L++FY K                                 ++  AR+
Sbjct: 153 KYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARR 212

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           +FD +P K+VV+W +MI+GY +N   +EA+ LF  M+   + P+  T V ++ AC ++G 
Sbjct: 213 IFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGI 272

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           + LGR +H++ +   +++ V L T+LI+MY++CG++  A E+F+ M   ++  W +MI+ 
Sbjct: 273 LTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITS 332

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
            G+HG G EA+ LF  M    V+P+ +TF+ VL AC H   V+EG   F  M Q YG+ P
Sbjct: 333 LGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAP 392

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV----------WTAML 384
             EH+ CM +L+ R+  L+EA+K  K+V     +P++          WT +L
Sbjct: 393 IPEHYECMTELYARSNNLDEAFKSTKEVGSLANSPSICFDARAKQVAWTQLL 444



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 116/332 (34%), Positives = 181/332 (54%), Gaps = 24/332 (7%)

Query: 74   FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
            +N++I   ++   S ++L  +  +    + P+  +F   IKSC+ L  L  GR  H   F
Sbjct: 1983 WNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAF 2042

Query: 134  VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            V G+++DL V +AL++ Y+K   +  AR +FD +P ++VV+W SMI+GY QN  A  A+ 
Sbjct: 2043 VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 2102

Query: 194  LFNLMRDF-----------GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            LF   +DF            V  DS   V VL+AC+++    +   VH F+V +G D ++
Sbjct: 2103 LF---KDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSI 2159

Query: 243  VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
             +  +L++ YA+CG    ++++FD M E + I+W +MI+ Y   G   EA+E+FH M  H
Sbjct: 2160 GVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRH 2219

Query: 303  -GVRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
             GVR N VT  AVL ACAHAG ++ G   H     M  EY +  G      ++D++ + G
Sbjct: 2220 VGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTS----IIDMYCKCG 2275

Query: 359  LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
             +  A K   D + EK   + WTAM+    MH
Sbjct: 2276 RVEMAKKTF-DRMKEKNVKS-WTAMVAGYGMH 2305



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 164/392 (41%), Gaps = 88/392 (22%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           ++++C +   L   R +H  +  SG  +D  +   L++ Y+    +  A  +F ++ +  
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
              WN +I     NG +++A+ L+  M   G+  D  T   V+ AC     IDLG+ VH 
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 232 FIVGQGLDVNVVLATSLINMYARCG-------------------------------NVSK 260
            ++  G   +V +  +LI+ Y +CG                               ++ +
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           AR IFD +   NV++WTAMI+GY  +    EA+ELF RM+A  + PN  T V+++ AC  
Sbjct: 210 ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
            G++  G  +      +Y +   +E  V     ++D++ + G + +A + V + +  K  
Sbjct: 270 MGILTLGRGI-----HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIE-VFETMPRKSL 323

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN-------------------------- 410
           P  W +M+ +  +H    LG E       +E  N                          
Sbjct: 324 PT-WNSMITSLGVH---GLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCA 379

Query: 411 --------------PGHYVMLSNIYALAGRMD 428
                         P HY  ++ +YA +  +D
Sbjct: 380 YFTRMTQHYGIAPIPEHYECMTELYARSNNLD 411



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 172/359 (47%), Gaps = 22/359 (6%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            + VH  ++  G+  S  +   L+      G    ++++F  +   D   +N++I   +++
Sbjct: 2144 EGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQS 2203

Query: 85   NFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
              S ++L  +  M+    +  +  T SAV+ +CAH   L  G+ +H  V     + ++ V
Sbjct: 2204 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCV 2263

Query: 144  QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
              ++++ Y K   V++A+K FDRM +K+V +W +M++GY  +G AKEA+ +F  M   GV
Sbjct: 2264 GTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGV 2323

Query: 204  NPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
             P+  T V VLAAC+  G ++ G  W +       ++  +     +++++ R G +++A 
Sbjct: 2324 KPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAY 2383

Query: 263  EIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVEL--FHRMRAHGVRPNNVTFVAVLSAC- 318
             +   M  + + + W +++    +H    + V+L      +   + P+N  +  +LS   
Sbjct: 2384 NLIKRMKMKPDFVVWGSLLGACRIH----KNVDLGEIAAQKLFELDPDNCGYYVLLSNLY 2439

Query: 319  AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
            A AG   +  R+   M+    + P       +V+L GR  +          ++G+K  P
Sbjct: 2440 ADAGRWADVERMRMLMKNRQLVKPP---GFSLVELKGRVHVF---------LVGDKEHP 2486



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 9/165 (5%)

Query: 164  FDRMPDKSVV-AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
            F +  DKS V +WNS+I+   + G + EA+  F+ +R  G+ P  ++  C + +C+ L D
Sbjct: 1971 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 2030

Query: 223  IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
            +  GR  H+     G + ++ ++++LI+MY++CG +  AR +FD +   NV++WT+MI+G
Sbjct: 2031 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 2090

Query: 283  YGMHGYGTEAVELFHRM--------RAHGVRPNNVTFVAVLSACA 319
            Y  +     A+ LF             + V  ++V  V+VLSAC+
Sbjct: 2091 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 2135


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/579 (41%), Positives = 359/579 (62%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKAG---PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
            P       +LKA    P L+  ++VH  +   G+     +   L++L    G +  A+ 
Sbjct: 166 NPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARI 225

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   +   + ++I    +     ++L  + +M   N+ P      +V+++   +  
Sbjct: 226 VFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVED 285

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+++H  V   G + +  +  +L   YAK   V VAR  FD+M   +V+ WN+MISG
Sbjct: 286 LEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISG 345

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y +NG+  EA+GLF  M    +  DS T    + ACAQ+G +DL +W+ ++I       +
Sbjct: 346 YAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRND 405

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V + T+LI+M+A+CG+V  ARE+FD   + +V+ W+AMI GYG+HG G +A++LF+ M+ 
Sbjct: 406 VFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQ 465

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV PN+VTFV +L+AC H+GLV+EG  +F SM+  YG+    +H+ C+VDL GR+G LN
Sbjct: 466 AGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKY-YGIEARHQHYACVVDLLGRSGHLN 524

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EAY F+  +  E P  +VW A+LGACK++++  LG   AE L S++P N GHYV LSN+Y
Sbjct: 525 EAYDFITTMPIE-PGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLY 583

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A +   D V  VR +M +KGL K +GYS +E++ K   F +GDKSHP   EI++ L+ L 
Sbjct: 584 ASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLE 643

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            R +EAG++P  ES +H+L +EE+E +L  HSE+LA+A+GL+ T+PG T+RI KNLR C+
Sbjct: 644 RRLKEAGFIPHIESVLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACI 703

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +CHSA K IS   NREI+VRD  RFHHFK G CSC DYW
Sbjct: 704 NCHSATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  241 bits (615), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 137/386 (35%), Positives = 212/386 (54%), Gaps = 15/386 (3%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           + ++L      + L Q+HA L+V+G   S  ++TK ++   + G I YA+++F   P P 
Sbjct: 74  FSSLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPS 133

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
            FL+N +I   S  NF  D++  Y RM  S ++P  +T   V+K+C+ + +L +G+ VH 
Sbjct: 134 VFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHG 193

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
            +F  G++SD+ VQ  LV  YAK   V+ AR VF+ + D+++V+W SMISGY QNG   E
Sbjct: 194 QIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPME 253

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ +F  MR   V PD    V VL A   + D++ G+ +H  +V  GL+    L  SL  
Sbjct: 254 ALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTA 313

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MYA+CG V  AR  FD M   NV+ W AMISGY  +GY  EAV LF  M +  +R +++T
Sbjct: 314 MYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSIT 373

Query: 311 FVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV-- 367
             + + ACA  G +     +   + + EY     V  +  ++D+F + G ++ A +    
Sbjct: 374 VRSAILACAQVGSLDLAKWMGDYINKTEY--RNDVFVNTALIDMFAKCGSVDLAREVFDR 431

Query: 368 ---KDVIGEKPAPAVWTAMLGACKMH 390
              KDV+       VW+AM+    +H
Sbjct: 432 TLDKDVV-------VWSAMIVGYGLH 450


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/580 (40%), Positives = 358/580 (61%), Gaps = 5/580 (0%)

Query: 5   QPHSPAYEAILKA--GPRLKPL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + ++L A   P L  L Q+VH  ++ AG      + T L+ +    G I+ A+ 
Sbjct: 145 KPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARV 204

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF  +P  +   +  LI   ++      +L     M  + ++P+  TF+++++ C   + 
Sbjct: 205 IFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAA 264

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ VH ++  SGY  +L V  +L+  Y K   ++ ARK+F  +P + VV W +M++G
Sbjct: 265 LEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTG 324

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q GF  EAI LF  M+  G+ PD  T   VL +C+    +  G+ +H+ +V  G +++
Sbjct: 325 YAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLD 384

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY-GMHGYGTEAVELFHRMR 300
           V L ++L++MYA+CG++  A  +F+ MSE NV+AWTA+I+G    HG   EA+E F +M+
Sbjct: 385 VYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMK 444

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G++P+ VTF +VLSAC H GLV+EG + F SM  +YG+ P VEH+ C VDL GRAG L
Sbjct: 445 KQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHL 504

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
            EA   +   +   P P+VW A+L AC++H + + G   AE++L ++P++ G YV LS+I
Sbjct: 505 EEAENVILS-MPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSI 563

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA AGR +  E VR +M ++ + K  G S +EVD K ++F + DKSHP + +IY  L +L
Sbjct: 564 YAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKL 623

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
             + +E GYVP++   +H+++EE++E  L  HSE+LA+ +GLM+T PGM IRIVKNLR+C
Sbjct: 624 TEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPGMPIRIVKNLRVC 683

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH+A KFIS    REII RD  RFHHF  G CSC D+W
Sbjct: 684 GDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  214 bits (546), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 209/394 (53%), Gaps = 7/394 (1%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           ++  + +S  +  +L+   RL+ L+Q   VHA ++ +G   +R +   LLS+    G +T
Sbjct: 40  LQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLT 99

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A+R+F  I   +   +  +I      N + ++   Y  M ++   P   TF +++ +  
Sbjct: 100 DARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFT 159

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
           +  +L LG+ VH  +  +G + +  V  +LV  YAK  ++  AR +FDR+P+K+VV W  
Sbjct: 160 NPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTL 219

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +I+GY Q G    A+ L   M+   V P+  T   +L  C     ++ G+ VH +I+  G
Sbjct: 220 LIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSG 279

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
               + +  SLI MY +CG + +AR++F  +   +V+ WTAM++GY   G+  EA+ LF 
Sbjct: 280 YGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFR 339

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
           RM+  G++P+ +TF +VL++C+    +QEG R+   +    G    V     +V ++ + 
Sbjct: 340 RMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHA-GYNLDVYLQSALVSMYAKC 398

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAML-GACKMH 390
           G +++A   V + + E+   A WTA++ G C  H
Sbjct: 399 GSMDDA-SLVFNQMSERNVVA-WTAIITGCCAQH 430



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 156/299 (52%), Gaps = 9/299 (3%)

Query: 89  DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
           ++L     MI+      +  F  +++ CA L  L  GR VH  +  SG   + +++  L+
Sbjct: 30  EALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLL 89

Query: 149 NFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
           + YAK  ++  AR+VFD + D+++V+W +MI  +       EA   +  M+  G  PD  
Sbjct: 90  SMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKV 149

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           T V +L A      + LG+ VH  IV  GL++   + TSL+ MYA+CG++SKAR IFD +
Sbjct: 150 TFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRL 209

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
            E NV+ WT +I+GY   G    A+EL   M+   V PN +TF ++L  C     ++ G 
Sbjct: 210 PEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGK 269

Query: 329 RVFASMRQE-YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAML 384
           +V   + Q  YG    V +   ++ ++ + G L EA K   D+    P   V  WTAM+
Sbjct: 270 KVHRYIIQSGYGRELWVVNS--LITMYCKCGGLEEARKLFSDL----PHRDVVTWTAMV 322



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 3/224 (1%)

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           + G  KEA+G+ N M   G    S     +L  CA+L  ++ GR VH  I+  G+  N  
Sbjct: 24  KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           L  +L++MYA+CG+++ AR +FD + + N+++WTAMI  +       EA + +  M+  G
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
            +P+ VTFV++L+A  +  L+Q G +V   +  E GL         +V ++ + G +++A
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEI-VEAGLELEPRVGTSLVGMYAKCGDISKA 202

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
            + + D + EK     WT ++         D+ +E+ E +   E
Sbjct: 203 -RVIFDRLPEKNV-VTWTLLIAGYAQQGQVDVALELLETMQQAE 244


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/562 (41%), Positives = 358/562 (63%), Gaps = 10/562 (1%)

Query: 28   HAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFS 87
            H    V G+     + + L+ +    G +  A+ +F  IP  +   + ++I    +   +
Sbjct: 1165 HQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQA 1224

Query: 88   TDSLLFYRRMIV--------SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             ++LL ++  +         +N+   +    +V+ +C+ +S   +   VH  V   G+D 
Sbjct: 1225 DNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDG 1284

Query: 140  DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN-LM 198
             + V   L++ YAK     V++KVFD M +K  ++WNSMI+ Y Q+G + EA+ +F+ ++
Sbjct: 1285 SIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMV 1344

Query: 199  RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
            R  GV  ++ T   VL ACA  G +  G+ +H+ ++   L+ NV + TS+I+MY +CG V
Sbjct: 1345 RHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRV 1404

Query: 259  SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
              A++ FD M E NV +WTAM++GYGMHG   EA+++F++M   GV+PN +TFV+VL+AC
Sbjct: 1405 EMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAAC 1464

Query: 319  AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
            +HAGLV+EG   F +M+ +Y + PG+EH+ CMVDLFGRAG LNEAY  +K  +  KP   
Sbjct: 1465 SHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKR-MKMKPDFV 1523

Query: 379  VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
            VW ++LGAC++HKN DLG   A+ L  ++P+N G+YV+LSN+YA AGR   VE +R +M 
Sbjct: 1524 VWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMK 1583

Query: 439  QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
             + L K  G+S VE+  + ++F +GDK HP+   IY+YL++L    ++ GYVP   S +H
Sbjct: 1584 NRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLH 1643

Query: 499  ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
            +++EEE+E  LR HSEKLA+AFG+M ++PG TI I+KNLR+C DCH+ IK IS   +R+ 
Sbjct: 1644 DVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDF 1703

Query: 559  IVRDRLRFHHFKRGSCSCLDYW 580
            +VRD  RFHHFK G CSC DYW
Sbjct: 1704 VVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/397 (32%), Positives = 219/397 (55%), Gaps = 31/397 (7%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           +L+     K L+Q+HA +I +G    + +  KL+ L    G I YA  +F+ I +P +F 
Sbjct: 33  LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFT 92

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N +I  N+    S  +L+ Y+ M+   I+   +TF  VIK+C +   ++LG+ VH  + 
Sbjct: 93  WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLI 152

Query: 134 VSGYDSDLHVQAALVNFYAKSN-------------------------------NVDVARK 162
             G+  D+ VQ  L++FY K                                 ++  AR+
Sbjct: 153 KYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARR 212

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           +FD +P K+VV+W +MI+GY +N   +EA+ LF  M+   + P+  T V ++ AC ++G 
Sbjct: 213 IFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGI 272

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           + LGR +H++ +   +++ V L T+LI+MY++CG++  A E+F+ M   ++  W +MI+ 
Sbjct: 273 LTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITS 332

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
            G+HG G EA+ LF  M    V+P+ +TF+ VL AC H   V+EG   F  M Q YG+ P
Sbjct: 333 LGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAP 392

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
             EH+ CM +L+ R+  L+EA+K  K+V     +P++
Sbjct: 393 IPEHYECMTELYARSNNLDEAFKSTKEVGSLANSPSI 429



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/332 (34%), Positives = 181/332 (54%), Gaps = 24/332 (7%)

Query: 74   FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
            +N++I   ++   S ++L  +  +    + P+  +F   IKSC+ L  L  GR  H   F
Sbjct: 1110 WNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAF 1169

Query: 134  VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            V G+++DL V +AL++ Y+K   +  AR +FD +P ++VV+W SMI+GY QN  A  A+ 
Sbjct: 1170 VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 1229

Query: 194  LFNLMRDF-----------GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            LF   +DF            V  DS   V VL+AC+++    +   VH F+V +G D ++
Sbjct: 1230 LF---KDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSI 1286

Query: 243  VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
             +  +L++ YA+CG    ++++FD M E + I+W +MI+ Y   G   EA+E+FH M  H
Sbjct: 1287 GVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRH 1346

Query: 303  -GVRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
             GVR N VT  AVL ACAHAG ++ G   H     M  EY +  G      ++D++ + G
Sbjct: 1347 VGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTS----IIDMYCKCG 1402

Query: 359  LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
             +  A K   D + EK   + WTAM+    MH
Sbjct: 1403 RVEMAKKTF-DRMKEKNVKS-WTAMVAGYGMH 1432



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 157/375 (41%), Gaps = 79/375 (21%)

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           R +H  +  SG  +D  +   L++ Y+    +  A  +F ++ +     WN +I     N
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G +++A+ L+  M   G+  D  T   V+ AC     IDLG+ VH  ++  G   +V + 
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 246 TSLINMYARCG-------------------------------NVSKAREIFDMMSELNVI 274
            +LI+ Y +CG                               ++ +AR IFD +   NV+
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
           +WTAMI+GY  +    EA+ELF RM+A  + PN  T V+++ AC   G++  G  +    
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI---- 279

Query: 335 RQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDV-------------------- 370
             +Y +   +E  V     ++D++ + G + +A +  + +                    
Sbjct: 280 -HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGL 338

Query: 371 -------------IGEKPAPAVWTAMLGACKMHKNFDLG----VEVAEHLLSVEPENPGH 413
                        +  KP    +  +L AC   KN   G      + +H   + P  P H
Sbjct: 339 GQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHY-GIAPI-PEH 396

Query: 414 YVMLSNIYALAGRMD 428
           Y  ++ +YA +  +D
Sbjct: 397 YECMTELYARSNNLD 411



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 136/265 (51%), Gaps = 3/265 (1%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            + VH  ++  G+  S  +   L+      G    ++++F  +   D   +N++I   +++
Sbjct: 1271 EGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQS 1330

Query: 85   NFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
              S ++L  +  M+    +  +  T SAV+ +CAH   L  G+ +H  V     + ++ V
Sbjct: 1331 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCV 1390

Query: 144  QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
              ++++ Y K   V++A+K FDRM +K+V +W +M++GY  +G AKEA+ +F  M   GV
Sbjct: 1391 GTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGV 1450

Query: 204  NPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
             P+  T V VLAAC+  G ++ G  W +       ++  +     +++++ R G +++A 
Sbjct: 1451 KPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAY 1510

Query: 263  EIFDMMS-ELNVIAWTAMISGYGMH 286
             +   M  + + + W +++    +H
Sbjct: 1511 NLIKRMKMKPDFVVWGSLLGACRIH 1535



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 9/165 (5%)

Query: 164  FDRMPDKSVV-AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
            F +  DKS V +WNS+I+   + G + EA+  F+ +R  G+ P  ++  C + +C+ L D
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 1157

Query: 223  IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
            +  GR  H+     G + ++ ++++LI+MY++CG +  AR +FD +   NV++WT+MI+G
Sbjct: 1158 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 1217

Query: 283  YGMHGYGTEAVELFHRM--------RAHGVRPNNVTFVAVLSACA 319
            Y  +     A+ LF             + V  ++V  V+VLSAC+
Sbjct: 1218 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 1262


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/494 (45%), Positives = 322/494 (65%), Gaps = 3/494 (0%)

Query: 89  DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
           D L FY  M+ +++ PS  +FS +++SCA      LG A HC +   G++ D+ +Q  L+
Sbjct: 13  DFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLL 72

Query: 149 NFYAKSNNVDVARKVFDRMPDKSV--VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           +FYAK   V+ AR +FD M +++   V WN+MIS Y Q G    AI +F  M+   V P 
Sbjct: 73  DFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPT 132

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T V +L+ACA LG +D+G W+H +I  + L ++VVL  +LI+MY +CG +  A ++F 
Sbjct: 133 EVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFH 192

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            +S  N+  W ++I G GM+G G EA+  F  M   G++P+ VTFV +LS C+H+GL+  
Sbjct: 193 GLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSA 252

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G R F+ M   YGL PGVEH+ CMVDL GRAG L EA + ++  +  KP   V  ++L A
Sbjct: 253 GQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIR-AMPMKPNSMVLGSLLRA 311

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C++HK+  LG +V + LL ++P + G+YV LSN+YA   R D V   R +MI++G+ K  
Sbjct: 312 CQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTP 371

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
           G S++EV+   + F  GD SHP   +I  +LDE+    +  G+VP + + +H++EEEE+E
Sbjct: 372 GCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKE 431

Query: 507 YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
            ++RYHSE++A+AFGLM T PG TIR+VKNLR C DCHSA+K IS A  REIIVRDR RF
Sbjct: 432 GAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRF 491

Query: 567 HHFKRGSCSCLDYW 580
           HHF+ GSCSC DYW
Sbjct: 492 HHFRNGSCSCNDYW 505



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 121/247 (48%), Gaps = 3/247 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP--SPDSFLFNTLIIRNS 82
           +  H  ++  G+     + T LL      G++  A+ +F  +   + +S  +NT+I    
Sbjct: 50  EAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYV 109

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
           +      ++  +++M   N+ P+  T  +++ +CAHL  L++G  +H ++       D+ 
Sbjct: 110 QCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVV 169

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           +  AL++ Y K   ++ A  VF  +  K++  WNS+I G   NG  +EAI  F +M   G
Sbjct: 170 LGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEG 229

Query: 203 VNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           + PD  T V +L+ C+  G +  G R+  E +   GL+  V     ++++  R G + +A
Sbjct: 230 IKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEA 289

Query: 262 REIFDMM 268
            E+   M
Sbjct: 290 LELIRAM 296


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/607 (38%), Positives = 368/607 (60%), Gaps = 38/607 (6%)

Query: 11  YEAI--LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLV---CDAGFITYAQRIFFC 65
           YE +  L+   + + L+Q+HA ++  G  +    +TK LS       + F+ YAQ +F  
Sbjct: 15  YETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDG 74

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
              PD+FL+N +I   S ++    SLL Y+RM+ S+   + YTF +++K+C++LS     
Sbjct: 75  FDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEET 134

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS-------- 177
             +H  +   GY++D++   +L+N YA + N  +A  +FDR+P+   V+WNS        
Sbjct: 135 TQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKA 194

Query: 178 -----------------------MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
                                  MISGY Q    KEA+ LF+ M++  V PD+ +    L
Sbjct: 195 GKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANAL 254

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
           +ACAQLG ++ G+W+H ++    + ++ VL   LI+MYA+CG + +A E+F  + + +V 
Sbjct: 255 SACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 314

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
           AWTA+ISGY  HG+G EA+  F  M+  G++PN +TF AVL+AC++ GLV+EG  +F SM
Sbjct: 315 AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSM 374

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
            ++Y L P +EH+ C+VDL GRAGLL+EA +F+++ +  KP   +W A+L AC++HKN +
Sbjct: 375 ERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQE-MPLKPNAVIWGALLKACRIHKNIE 433

Query: 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           LG E+ E L++++P + G YV  +NI+A+  + D+    R +M ++G+ K  G ST+ ++
Sbjct: 434 LGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLE 493

Query: 455 QKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL-EEEEREYSLRYHS 513
              + F  GD+SHP   +I      +  +  E GYVPE E  + +L +++ERE  +  HS
Sbjct: 494 GTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHS 553

Query: 514 EKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGS 573
           EKLA+ +GL++T PG  IRI+KNLR+C DCH   K IS    R+I++RDR RFHHF+ G 
Sbjct: 554 EKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGK 613

Query: 574 CSCLDYW 580
           CSC DYW
Sbjct: 614 CSCGDYW 620


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/610 (40%), Positives = 371/610 (60%), Gaps = 35/610 (5%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAG--------------YGRSRSM----- 42
           +P+S  +  +LK+  +L      +Q+HAH++  G              Y +S  M     
Sbjct: 126 EPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQL 185

Query: 43  ------------LTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDS 90
                        T L++     G++  A+++F  +P  D   +N +I   ++   S ++
Sbjct: 186 VFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEA 245

Query: 91  LLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNF 150
           LL +  M  +N+ P+  T  +V+ +CA  + L+LG ++   +   G  S+L +  AL++ 
Sbjct: 246 LLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDM 305

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
           Y+K  ++  AR++FD M ++ V++WN MI GY      KEA+ LF  M   GV P   T 
Sbjct: 306 YSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITF 365

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           + +L +CA LG IDLG+W+H +I      V+  L+TSLI++YA+CGN+  AR++FD M  
Sbjct: 366 LSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKI 425

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            ++ +W AMI G  MHG   +A ELF +M + G+ PN +TFV +LSAC HAGLV  G + 
Sbjct: 426 KSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQF 485

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           F+SM Q+Y + P  +H+ CM+DL GRAGL  EA   +++ +  KP  A+W ++LGAC+ H
Sbjct: 486 FSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQN-MEVKPDGAIWGSLLGACRDH 544

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
              +LG  VAE L  +EP+NPG YV+LSNIYA AG+ D V  +R  +  +G+KK  G +T
Sbjct: 545 GRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTT 604

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLR 510
           +EVD   + F +GDK HP + +IY+ L+E+  + +  G+V ++   +++++EE +E +L 
Sbjct: 605 IEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALS 664

Query: 511 YHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
           +HSEKLA+AFGL+ T PG  IRI+KNLR+C +CHSA K IS   NREII RDR RFHHFK
Sbjct: 665 HHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFK 724

Query: 571 RGSCSCLDYW 580
            GSCSC DYW
Sbjct: 725 DGSCSCNDYW 734



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 172/540 (31%), Positives = 271/540 (50%), Gaps = 75/540 (13%)

Query: 6   PHSPAYEAILKAGPRLKPL---------QQVHAHLIVAGYGRSRSMLTKLL--SLVCDAG 54
           P S     +L+  P LK L         +Q+HAH+I  G   +   L+KL+  S V  +G
Sbjct: 18  PSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSG 77

Query: 55  FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
            I+YA  +F  I  P+ F++N++I   S +     +L+F+ RMI S + P++YTF  ++K
Sbjct: 78  DISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLK 137

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS---NN--------------- 156
           SCA L+  + G+ +H HV   G+ SD+ +  +L+N YA+S   NN               
Sbjct: 138 SCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAIS 197

Query: 157 -------------VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
                        +D AR++FD MP K VV+WN+MI+GY Q G +KEA+ LF  MR   V
Sbjct: 198 FTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANV 257

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            P+ +T V VL+ACAQ   +DLG  +  +I  +GL  N+ L  +LI+MY++CG++  ARE
Sbjct: 258 PPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARE 317

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +FD M E +VI+W  MI GY       EA+ LF  M A GV P  +TF+++L +CAH G 
Sbjct: 318 LFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGA 377

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           +  G  + A + + +  +        ++DL+ + G +  A +    +  +  + A W AM
Sbjct: 378 IDLGKWIHAYINKNFNSVSTSLSTS-LIDLYAKCGNIVAARQVFDGM--KIKSLASWNAM 434

Query: 384 LGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
           +    MH   D   E+   + S  +EP       +LS                       
Sbjct: 435 ICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSAC--------------------- 473

Query: 442 LKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE 501
             KH G   V++ Q+ +   + D      ++ Y  + +L+GR   AG   E+ES +  +E
Sbjct: 474 --KHAGL--VDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGR---AGLFEEAESLLQNME 526


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/542 (44%), Positives = 354/542 (65%), Gaps = 7/542 (1%)

Query: 41  SMLTKLLSLVCDAG-FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV 99
           S+ T LLS V  A   ++YA+ +F  IPSPD+  +NT IIR+    F + SL ++  M  
Sbjct: 22  SLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNT-IIRSHSRFFPSHSLFYFFSMRS 80

Query: 100 SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV 159
           + I   N+TF  V+K+C+ L I NL   +H  +   G DSD+ VQ AL+  Y    ++++
Sbjct: 81  NGIPLDNFTFPFVLKACSRLQI-NL--HLHSLIVKYGLDSDIFVQNALICVYGYCGSLEM 137

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR-DFGVNPDSTTCVCVLAACA 218
           A KVFD M ++  V+W+++I+ +  NG+A EA+ LF  M+ +  V PD  T + V++A +
Sbjct: 138 AVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAIS 197

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
            LGD++LGRWV  FI   GL V+V L T+LI+M++RCG++ ++  +F+ M+  NV+ WTA
Sbjct: 198 HLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTA 257

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           +I+G G+HG  TEA+ +FH MR  GV+P+ VTF  VL AC+H GLV+EG  +F S+R+ Y
Sbjct: 258 LINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVY 317

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
            + P ++H+ CMVD+ GRAGLLNEAY FV+  +  KP   +W  +LGAC  H N  L  +
Sbjct: 318 RMDPLLDHYGCMVDILGRAGLLNEAYDFVER-MPMKPNSIIWRTLLGACVNHNNLGLAEK 376

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458
           V   +  +     G  V+LSN+Y  AGR      +R+ M +K + K  G S++ VDQ  +
Sbjct: 377 VKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIH 436

Query: 459 LFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLAL 518
            F  GD SHP + +I ++L  ++G  R  GY+ ++++ +H++EEEERE+SL YHSEKLA+
Sbjct: 437 EFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAV 496

Query: 519 AFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLD 578
           AF ++      TIRI+KNLR+C DCHS +K ISV   R+II+RDR RFHHF++G CSC D
Sbjct: 497 AFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHD 556

Query: 579 YW 580
           YW
Sbjct: 557 YW 558


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/579 (41%), Positives = 363/579 (62%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P S    +IL A    + L+    VH +++ AG+    ++ T L+ +    G ++ A+ 
Sbjct: 128 RPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARV 187

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF  +       +N++I    ++  +  ++L +++M+   + P+N T    + +CA L  
Sbjct: 188 IFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGD 247

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ VH  V     DSD+ V  +L++ Y+K   VD+A  +F  + +K++V+WN+MI G
Sbjct: 248 LERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILG 307

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y QNG   EA+  F  M+   + PDS T V V+ A A+L      +W+H  ++ + LD N
Sbjct: 308 YAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKN 367

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V + T+L++MYA+CG +  AR++FDMM+  +VI W AMI GYG HG G  +VELF  M+ 
Sbjct: 368 VFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKK 427

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             ++PN++TF+  LSAC+H+GLV+EG   F SM+++YG+ P ++H+  MVDL GRAG LN
Sbjct: 428 GTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLN 487

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           +A+ F++  +  KP   V+ AMLGACK+HKN DLG + A  +  + P++ G++V+L+NIY
Sbjct: 488 QAWDFIQK-MPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIY 546

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A A    +V  VR IM + GL+K  G S VE+  + + F  G  SHP + +IY YL+ L+
Sbjct: 547 ATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLV 606

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              R AGYVP++ S +H++E++ +   L  HSEKLA+AFGL+ TS G  I I KNLR+C 
Sbjct: 607 DEIRAAGYVPDTNS-IHDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCG 665

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+A K+IS+ T REIIVRD  RFH FK G CSC DYW
Sbjct: 666 DCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 214/392 (54%), Gaps = 5/392 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  +++H  +I +G+  +   +T ++++      I  A  +F  +P  D   +NT+I  
Sbjct: 46  LKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISG 105

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            ++  F+  +L+   RM      P + T  +++ + A   +L +G AVH +V  +G++S 
Sbjct: 106 YAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESL 165

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           ++V  ALV+ Y+K  +V +AR +FD M  ++VV+WNSMI GY Q+G A+ A+ +F  M D
Sbjct: 166 VNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLD 225

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            GV P + T +  L ACA LGD++ G++VH+ +    LD +V +  SLI+MY++C  V  
Sbjct: 226 EGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDI 285

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A +IF  +    +++W AMI GY  +G   EA+  F  M++  ++P++ T V+V+ A A 
Sbjct: 286 AADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAE 345

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
             + ++   +   + + + L   V     +VD++ + G ++ A K   D++  +     W
Sbjct: 346 LSIPRQAKWIHGLVIRRF-LDKNVFVMTALVDMYAKCGAIHTARKLF-DMMNARHV-ITW 402

Query: 381 TAMLGACKMHKNFDLGVEVAEHLL--SVEPEN 410
            AM+     H      VE+ + +   +++P +
Sbjct: 403 NAMIDGYGTHGLGKTSVELFKEMKKGTIKPND 434



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 195/377 (51%), Gaps = 10/377 (2%)

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           +K++    +L F+ RM   ++ P  Y F+ ++K C   S L  G+ +H  V  SG+  +L
Sbjct: 6   AKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNL 65

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
                +VN YAK   ++ A  +FDRMP++ +V WN+MISGY QNGFAK A+ L   M + 
Sbjct: 66  FAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEE 125

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G  PDS T V +L A A    + +G  VH +++  G +  V ++T+L++MY++CG+VS A
Sbjct: 126 GHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIA 185

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           R IFD M    V++W +MI GY   G    A+ +F +M   GV+P NVT +  L ACA  
Sbjct: 186 RVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADL 245

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
           G ++ G  V   + Q   L   V     ++ ++ +   ++ A    K++         W 
Sbjct: 246 GDLERGKFVHKLVDQ-LKLDSDVSVMNSLISMYSKCKRVDIAADIFKNL--RNKTLVSWN 302

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSNIYALA--GRMDRVEVVRNIM 437
           AM+     +   +   E       ++  N  P  + M+S I ALA      + + +  ++
Sbjct: 303 AMILGYAQNGCVN---EALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 359

Query: 438 IQKGLKKHVGYSTVEVD 454
           I++ L K+V   T  VD
Sbjct: 360 IRRFLDKNVFVMTALVD 376



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 132/275 (48%), Gaps = 14/275 (5%)

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           M+ GY ++     A+  F+ M+   V P       +L  C    D+  G+ +H  ++  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
              N+   T ++NMYA+C  ++ A  +FD M E +++ W  MISGY  +G+   A+ L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDL 353
           RM   G RP+++T V++L A A   L++ G  V       Y L  G E  V     +VD+
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHG-----YVLRAGFESLVNVSTALVDM 175

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
           + + G ++ A + + D +  +   + W +M+       + +  + + + +L  E   P +
Sbjct: 176 YSKCGSVSIA-RVIFDGMDHRTVVS-WNSMIDGYVQSGDAEGAMLIFQKMLD-EGVQPTN 232

Query: 414 YVMLSNIYALA--GRMDRVEVVRNIMIQKGLKKHV 446
             ++  ++A A  G ++R + V  ++ Q  L   V
Sbjct: 233 VTVMGALHACADLGDLERGKFVHKLVDQLKLDSDV 267


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/537 (41%), Positives = 334/537 (62%), Gaps = 1/537 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T LL +    G +  A+++F  +       +  +I    ++N   +    + RM   NI 
Sbjct: 236 TALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIF 295

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P+  T  ++I  C     L LG+ +H ++  +G+   L +  ALV+ Y K +++  AR +
Sbjct: 296 PNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARAL 355

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           FD   ++ V+ W +M+S Y Q     +A  LF+ MR  GV P   T V +L+ CA  G +
Sbjct: 356 FDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGAL 415

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
           DLG+WVH +I  + ++V+ +L T+L++MYA+CG+++ A  +F      ++  W A+I+G+
Sbjct: 416 DLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGF 475

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
            MHGYG EA+++F  M   GV+PN++TF+ +L AC+HAGLV EG ++F  M   +GL+P 
Sbjct: 476 AMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQ 535

Query: 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
           +EH+ CMVDL GRAGLL+EA++ +K  +  KP   VW A++ AC++HKN  LG   A  L
Sbjct: 536 IEHYGCMVDLLGRAGLLDEAHEMIKS-MPIKPNTIVWGALVAACRLHKNPQLGELAATQL 594

Query: 404 LSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMG 463
           L +EPEN G+ V++SNIYA A R      VR  M   G+KK  G+S +EV+   + F MG
Sbjct: 595 LEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMG 654

Query: 464 DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLM 523
           D+SHP    I + L E+  +  EAGYVP++ + +  ++EEE+E +L YHSEKLA+AFGL+
Sbjct: 655 DQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLI 714

Query: 524 RTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            T+P   IRIVKNLR+C DCH+A K +S    R IIVRDR RFHHF+ G CSC DYW
Sbjct: 715 STAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 199/383 (51%), Gaps = 8/383 (2%)

Query: 13  AILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           ++LKA  ++   Q   ++H  ++  G  R   +   L+ +  +   + YA+ +F  +   
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   ++T+I   S+      +L   R M    + PS     +++   A  + + +G+A+H
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 218

Query: 130 CHVFVSGYDSDLHV--QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
            +V  +  +  + V    AL++ YAK  ++ +AR++F+ +  K+VV+W +MI+G  ++  
Sbjct: 219 AYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNR 278

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            +E   LF  M++  + P+  T + ++  C   G + LG+ +H +I+  G  V++ LAT+
Sbjct: 279 LEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATA 338

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L++MY +C ++  AR +FD     +V+ WTAM+S Y       +A  LF +MR  GVRP 
Sbjct: 339 LVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPT 398

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            VT V++LS CA AG +  G  V + + +E   +  +  +  +VD++ + G +N A +  
Sbjct: 399 KVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCI-LNTALVDMYAKCGDINAAGRLF 457

Query: 368 KDVIGEKPAPAVWTAMLGACKMH 390
            + I       +W A++    MH
Sbjct: 458 IEAISRD--ICMWNAIITGFAMH 478



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 173/353 (49%), Gaps = 17/353 (4%)

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           N+   +V+K+C  +S   LG+ +H  V   G D D+ V  AL+  Y +   V+ AR VFD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           +M ++ VV+W++MI    +N     A+ L   M    V P     V ++   A   ++ +
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 226 GRWVHEFIVGQGLD--VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
           G+ +H +++    +  + V   T+L++MYA+CG++  AR++F+ +++  V++WTAMI+G 
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
                  E  +LF RM+   + PN +T ++++  C   G +Q G ++ A + +  G    
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRN-GFSVS 332

Query: 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
           +     +VD++G+   +  A         +     +WTAML A       D    + + +
Sbjct: 333 LALATALVDMYGKCSDIRNARALFDST--QNRDVMIWTAMLSAYAQANCIDQAFNLFDQM 390

Query: 404 LS--VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
            +  V P       +LS + A+AG +D         + K +  ++    VEVD
Sbjct: 391 RTSGVRPTKVTIVSLLS-LCAVAGALD---------LGKWVHSYIDKERVEVD 433



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 136/264 (51%), Gaps = 2/264 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+HA+++  G+  S ++ T L+ +      I  A+ +F    + D  ++  ++   ++A
Sbjct: 318 KQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQA 377

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           N    +   + +M  S + P+  T  +++  CA    L+LG+ VH ++     + D  + 
Sbjct: 378 NCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILN 437

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            ALV+ YAK  +++ A ++F     + +  WN++I+G+  +G+ +EA+ +F  M   GV 
Sbjct: 438 TALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVK 497

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKARE 263
           P+  T + +L AC+  G +  G+ + E +V   GL   +     ++++  R G + +A E
Sbjct: 498 PNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHE 557

Query: 264 IFDMMS-ELNVIAWTAMISGYGMH 286
           +   M  + N I W A+++   +H
Sbjct: 558 MIKSMPIKPNTIVWGALVAACRLH 581


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/582 (40%), Positives = 360/582 (61%), Gaps = 5/582 (0%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           + ++P S     +L A   +  L   + +H + I AG+ +  ++ T L  +    G +  
Sbjct: 242 EGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVET 301

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+ IF  +       +N+++    +      ++  + +M+   I P+  T    + +CA 
Sbjct: 302 ARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACAD 361

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L  L  G+ VH  V      SD+ V  +L++ Y+K   VD+A  +F+ +  ++ V+WN+M
Sbjct: 362 LGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAM 421

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           I GY QNG   EA+  F+ M+  G+ PDS T V V+ A A+L      +W+H  I+   L
Sbjct: 422 ILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCL 481

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           D N+ + T+L++MY++CG +  AR++FDM+S+ +VI W AMI GYG HG G  A++LF +
Sbjct: 482 DKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDK 541

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M+   V PN++T+++V+SAC+H+GLV EG R F SM+Q+YGL P ++H+  MVDL GRAG
Sbjct: 542 MKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAG 601

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
            + EA+ F+++ +   P   V+ AMLGACK+HKN ++G + A+ L  + P+  G++V+L+
Sbjct: 602 RIKEAWDFIEN-MPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLA 660

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           NIYA   +  +V  VR  M +KGLKK  G S VE+  + + F  G  +HP +  IY +L+
Sbjct: 661 NIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLE 720

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           EL+   + AGYVP++   + ++E++ +E  L  HSEKLA+AFGL+ TSPG TI + KNLR
Sbjct: 721 ELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLR 779

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+A K+IS+ T REIIVRD  RFHHFK G CSC DYW
Sbjct: 780 VCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 226/443 (51%), Gaps = 6/443 (1%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           +L+    +K L Q+   +I  G        TKL+SL    G I  A R+F  I      L
Sbjct: 55  LLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDAL 114

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           ++T++   +K +    +L F  RM   ++ P  Y F+ ++K C   + L  G+ +H  + 
Sbjct: 115 YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI 174

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            + + +++     +VN YAK   +D A K+FDRMP++ +V+WN++I+G+ QNGFAK+A+ 
Sbjct: 175 TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALE 234

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           L   M+D G  PDS T V VL A A +G + +G+ +H + +  G    V ++T+L +MY+
Sbjct: 235 LVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYS 294

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +CG+V  AR IFD M +  V++W +M+ GY  +G   +A+ +F +M   G+ P  VT + 
Sbjct: 295 KCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIME 354

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
            L ACA  G ++ G  V   + Q   L   +     ++ ++ +   ++ A     ++ G 
Sbjct: 355 ALHACADLGDLERGKFVHKFVDQ-LNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGR 413

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVE 431
                 W AM+     +      +     + S+  + P  + M+S I ALA        +
Sbjct: 414 THVS--WNAMILGYAQNGRVSEALNCFSEMKSLGMK-PDSFTMVSVIPALAELSVTRHAK 470

Query: 432 VVRNIMIQKGLKKHVGYSTVEVD 454
            +  ++I+  L K++  +T  VD
Sbjct: 471 WIHGLIIRSCLDKNIFVTTALVD 493


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/560 (42%), Positives = 349/560 (62%), Gaps = 1/560 (0%)

Query: 21   LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
            L  ++QVH    V G  ++  +  KL+        +  A  +F  +   DS  ++ ++  
Sbjct: 751  LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810

Query: 81   NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
             +K     +    +R +I     P NYT   VI++C  L  L +GR +H  V+  G D D
Sbjct: 811  FAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLD 870

Query: 141  LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
              V AALV+ Y K   ++ AR +FD+M ++ +V W  MI GY + G A E++ LF+ MR+
Sbjct: 871  HFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMRE 930

Query: 201  FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
             GV PD    V V+ ACA+LG +   R + ++I  +   ++V+L T++I+M+A+CG V  
Sbjct: 931  EGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVES 990

Query: 261  AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
            AREIFD M E NVI+W+AMI+ YG HG G +A++LF  M   G+ PN +T V++L AC+H
Sbjct: 991  AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSH 1050

Query: 321  AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
            AGLV+EG R F+ M ++Y +   V+H+ C+VDL GRAG L+EA K +  +  EK    +W
Sbjct: 1051 AGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKD-EGLW 1109

Query: 381  TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
             A LGAC+ HK+  L  + A  LL ++P+NPGHY++LSNIYA AGR + V  +R++M Q+
Sbjct: 1110 GAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQR 1169

Query: 441  GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
             LKK  G++ +EVD K++ FS+GD +HP + EIY+ L  L  +    GYVP++   +H++
Sbjct: 1170 RLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDV 1229

Query: 501  EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
            +EE +   L  HSEKLA+AFGL+ T     IRI+KNLR+C DCH+  K +S  T R IIV
Sbjct: 1230 DEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIV 1289

Query: 561  RDRLRFHHFKRGSCSCLDYW 580
            RD  RFHHFK G+CSC DYW
Sbjct: 1290 RDANRFHHFKEGACSCGDYW 1309



 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/549 (39%), Positives = 329/549 (59%), Gaps = 12/549 (2%)

Query: 1   MKNKQPHSPAYEAILKAGPR-----------LKPLQQVHAHLIVAGYGRSRSMLTKLLSL 49
           + N++  S  +  + +  P+           L  ++QVHA   V G   +  +  KL+  
Sbjct: 44  LHNREEESSKFHFLQRLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYF 103

Query: 50  VCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTF 109
                 +  A  +F  +   DS  ++ ++   +K     +    +R +I     P NYT 
Sbjct: 104 YSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTL 163

Query: 110 SAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD 169
             VI++C  L  L +GR +H  V+  G D D  V AALV+ Y K   ++ AR +FD+M +
Sbjct: 164 PFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQE 223

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           + +V W  MI GY + G A E++ LF  MR+ GV PD    V V+ ACA+LG +   R +
Sbjct: 224 RDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARII 283

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
            ++I  +   ++V+L T++I+MYA+CG V  AREIFD M E NVI+W+AMI+ YG HG G
Sbjct: 284 DDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQG 343

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
            +A++LF  M + G+ P+ +T  ++L AC+HAGLV+EG R F+SM ++Y +   V+H+ C
Sbjct: 344 RKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTC 403

Query: 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
           +VDL GRAG L+EA K +K +  EK    +W A LGAC+ HK+  L  + A  LL ++ +
Sbjct: 404 VVDLLGRAGRLDEALKLIKSMTIEKD-EGLWGAFLGACRTHKDVVLAEKAATSLLELQSQ 462

Query: 410 NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPN 469
           NPGHYV+LSNIYA AGR + V  +R++M Q+ LKK  G++ +EVD K++ FS+GD +HP 
Sbjct: 463 NPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPR 522

Query: 470 TNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGM 529
           + EIY+ L  L  +    GYVP++   +H+++EE +   L  HSEKLA+AFGL+ T    
Sbjct: 523 SKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHT 582

Query: 530 TIRIVKNLR 538
            IRI+KNLR
Sbjct: 583 PIRIIKNLR 591


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/582 (42%), Positives = 360/582 (61%), Gaps = 19/582 (3%)

Query: 13  AILKAGPRLKPLQQVHAHL-------IVAGYGRSR---SMLTKLLSLVCDAGFITYAQRI 62
           ++++  P L  L+  HAHL       + A +  S+   S ++        A   +YA+ +
Sbjct: 72  SLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPAAAQAAASSYARNL 131

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSI 121
           F  IP P +F +N+LI R   A  S  +L  YRRM+   +  P+++T +  +K+CA +  
Sbjct: 132 FDQIPDPTAFCYNSLI-RALPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAAVPA 190

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMIS 180
              GR +H      G  +  +VQ  L+N YAK   V +AR VFD M  DK++VAW++M+S
Sbjct: 191 PGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVS 250

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY + G   EA+GLF  M+  GV PD  T V V++ACA+ G +DLG+WVH +I  +G+ V
Sbjct: 251 GYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITV 310

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           ++ L+T+LI+MYA+CG + +AR +FD M E +  AW+AMI G+ +HG   +A+ LF RM 
Sbjct: 311 DLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRML 370

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
              VRPNNVTF+ VLSACAH+GLV++G R ++ M Q  G+ P +E++ CMVDL  R+GLL
Sbjct: 371 ELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIM-QNLGIKPSMENYGCMVDLLCRSGLL 429

Query: 361 NEAYKFVKDVIGEKPAP--AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           ++AY FV   IG   +P   +W  +L ACK     D+     + LL +EP NP +YV+LS
Sbjct: 430 DDAYSFV---IGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLS 486

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           N+YA   + DRV  +R  M  K +    G S++E++   + F + D SHP   EI   L 
Sbjct: 487 NLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLR 546

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           E+  R R AG+ P + + +H++ EEE+E +L  HSE+LA+A+GL++T     IR+VKNLR
Sbjct: 547 EMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLR 606

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            C+DCH   K IS A NREI+VRDR+RFH F  GSCSC D+W
Sbjct: 607 FCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/582 (42%), Positives = 360/582 (61%), Gaps = 19/582 (3%)

Query: 13  AILKAGPRLKPLQQVHAHL-------IVAGYGRSR---SMLTKLLSLVCDAGFITYAQRI 62
           ++++  P L  L+  HAHL       + A +  S+   S ++        A   +YA+ +
Sbjct: 23  SLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPAAAQAAASSYARNL 82

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSI 121
           F  IP P +F +N+LI R   A  S  +L  YRRM+   +  P+++T +  +K+CA +  
Sbjct: 83  FDQIPDPTAFCYNSLI-RALPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAAVPA 141

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMIS 180
              GR +H      G  +  +VQ  L+N YAK   V +AR VFD M  DK++VAW++M+S
Sbjct: 142 PGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVS 201

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY + G   EA+GLF  M+  GV PD  T V V++ACA+ G +DLG+WVH +I  +G+ V
Sbjct: 202 GYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITV 261

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           ++ L+T+LI+MYA+CG + +AR +FD M E +  AW+AMI G+ +HG   +A+ LF RM 
Sbjct: 262 DLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRML 321

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
              VRPNNVTF+ VLSACAH+GLV++G R ++ M Q  G+ P +E++ CMVDL  R+GLL
Sbjct: 322 ELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIM-QNLGIKPSMENYGCMVDLLCRSGLL 380

Query: 361 NEAYKFVKDVIGEKPAP--AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           ++AY FV   IG   +P   +W  +L ACK     D+     + LL +EP NP +YV+LS
Sbjct: 381 DDAYSFV---IGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLS 437

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           N+YA   + DRV  +R  M  K +    G S++E++   + F + D SHP   EI   L 
Sbjct: 438 NLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLR 497

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           E+  R R AG+ P + + +H++ EEE+E +L  HSE+LA+A+GL++T     IR+VKNLR
Sbjct: 498 EMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLR 557

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            C+DCH   K IS A NREI+VRDR+RFH F  GSCSC D+W
Sbjct: 558 FCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/560 (41%), Positives = 347/560 (61%), Gaps = 1/560 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L  ++QVHA +   G  R+ ++  KLL +  + G +  AQ +F  +     + ++ ++  
Sbjct: 66  LFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGG 125

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            +K          +R ++ S     +Y+   VI++C  L  L  GR +HC     G D  
Sbjct: 126 YAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYG 185

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
             V A LV+ YA+   V+ A ++F +M  + +  W  MI    ++G   E++  F+ MR+
Sbjct: 186 HFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRN 245

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G+ PD    V V+ ACA+LG ++  + +H +I G G  ++V+L T++I+MYA+CG+V  
Sbjct: 246 QGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVES 305

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           AR IFD M   NVI W+AMI+ YG HG G +A+ELF  M   G+ PN +TFV++L AC+H
Sbjct: 306 ARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSH 365

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
           AGL++EG R F+SM  EYG+ P V+H+ CMVDL GRAG L+EA + ++ +  EK    +W
Sbjct: 366 AGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKD-EVLW 424

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
            A+LGAC++H++ DL   VA  LL ++ + PGHYV+LSNIYA AG+ + +   R++M + 
Sbjct: 425 GALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKG 484

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
           GL+K  G + +EV +K Y F +GDK+HP +NEIY+ L  L  +   AGY P++   ++++
Sbjct: 485 GLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDV 544

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
           +EE ++  L  HSEKLA+AFGL+    G  IRI KNLR+C DCH+  KF+S+   + IIV
Sbjct: 545 DEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIV 604

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RD  RFHHFK G CSC DYW
Sbjct: 605 RDAKRFHHFKEGVCSCRDYW 624


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/537 (43%), Positives = 342/537 (63%), Gaps = 1/537 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T ++ +    G +  A+ IF  +   +   ++ +I           +L  +R M+ S + 
Sbjct: 170 TAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGML 229

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   T ++++ +C+ L  L +GR +H  V+  G D D  V AALV+ Y K   ++ AR +
Sbjct: 230 PDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFL 289

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           FD+MP++ +V W  MI GY + G A E++ LF+ MR+ GV PD    V V+ ACA+LG +
Sbjct: 290 FDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAM 349

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
              R + ++I  +   ++V+L T++I+M+A+CG V  AREIFD M E NVI+W+AMI+ Y
Sbjct: 350 HKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAY 409

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
           G HG G +A++LF  M   G+ PN +T V++L AC+HAGLV+EG R F+ M ++Y +   
Sbjct: 410 GYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRAD 469

Query: 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
           V+H+ C+VDL GRAG L+EA K ++ +  EK    +W A LGAC+ HK+  L  + A  L
Sbjct: 470 VKHYTCVVDLLGRAGRLDEALKLIESMTVEKD-EGLWGAFLGACRTHKDVVLAEKAATSL 528

Query: 404 LSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMG 463
           L ++P+NPGHY++LSNIYA AGR + V   R++M Q+ LKK  G++ +EVD K++ FS+G
Sbjct: 529 LELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVG 588

Query: 464 DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLM 523
           D +HP + EIY+ L  L  +    GYVP++   +H+++EE +   L  HSEKLA+AFGL+
Sbjct: 589 DTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLI 648

Query: 524 RTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            T     IRI+KNLR+C DCH+  K +S  T R IIVRD  RFHHFK G+CSC DYW
Sbjct: 649 ATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 207/365 (56%), Gaps = 10/365 (2%)

Query: 94  YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153
           +R +I     P NYT   VI++C  L  L +GR +H  V+  G D D  V AALV+ Y K
Sbjct: 18  FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVK 77

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
              ++ AR +FD+M ++ +V W  MI GY + G A E++ LF  MR+ GV PD    V V
Sbjct: 78  CREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTV 137

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           + ACA+LG +   R + ++I  +   ++V+L T++I+MYA+CG V  AREIFD M E NV
Sbjct: 138 VFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNV 197

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
           I+W+AMI+ YG HG G +A++LF  M + G+ P+ +T  ++L AC+    +Q G R+   
Sbjct: 198 ISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMG-RLIHH 256

Query: 334 MRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHK 391
           +  ++GL   ++H VC  +VD++G+   + +A +F+ D + E+     WT M+G      
Sbjct: 257 IVYKFGL--DLDHFVCAALVDMYGKCREIEDA-RFLFDKMPERDL-VTWTVMIGGYAECG 312

Query: 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVEVVRNIMIQKGLKKHVGYS 449
           N +  + + + +   E   P    M++ ++A A  G M +   + + + +K  +  V   
Sbjct: 313 NANESLVLFDKMRE-EGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG 371

Query: 450 TVEVD 454
           T  +D
Sbjct: 372 TAMID 376



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 197/389 (50%), Gaps = 6/389 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVH-AHLIVAGYGRSRS--MLTKLLSLVCDAGFITYAQR 61
           +P +     +++A   LK LQ     H IV  +G      +   L+ +      I  A+ 
Sbjct: 27  RPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARF 86

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   D   +  +I   ++   + +SL+ + +M    + P       V+ +CA L  
Sbjct: 87  LFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGA 146

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           ++  R +  ++    +  D+ +  A+++ YAK   V+ AR++FDRM +K+V++W++MI+ 
Sbjct: 147 MHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAA 206

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y  +G  ++A+ LF +M   G+ PD  T   +L AC+ L ++ +GR +H  +   GLD++
Sbjct: 207 YGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLD 266

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +  +L++MY +C  +  AR +FD M E +++ WT MI GY   G   E++ LF +MR 
Sbjct: 267 HFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMRE 326

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV P+ V  V V+ ACA  G + +  R      Q       V     M+D+  + G + 
Sbjct: 327 EGVVPDKVAMVTVVFACAKLGAMHKA-RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCV- 384

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           E+ + + D + EK   + W+AM+ A   H
Sbjct: 385 ESAREIFDRMEEKNVIS-WSAMIAAYGYH 412



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 4/245 (1%)

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           M+ G+ + G      G F  +   G  PD+ T   V+ AC  L ++ +GR +H  +   G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           LD++  +  +L++MY +C  +  AR +FD M E +++ WT MI GY   G   E++ LF 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
           +MR  GV P+ V  V V+ ACA  G + +  R+     Q       V     M+D++ + 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKA-RIIDDYIQRKKFQLDVILGTAMIDMYAKC 179

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           G + E+ + + D + EK   + W+AM+ A   H      +++   +LS     P    + 
Sbjct: 180 GCV-ESAREIFDRMEEKNVIS-WSAMIAAYGYHGQGRKALDLFRMMLS-SGMLPDKITLA 236

Query: 418 SNIYA 422
           S +YA
Sbjct: 237 SLLYA 241


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/539 (41%), Positives = 341/539 (63%), Gaps = 3/539 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L+      G+I  AQ++F  IP  D   +N +I   ++     ++L  ++ M+ +N+ 
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   T   V+ +CA    + LGR VH  +   G+ S+L +  AL++ Y+K   ++ A  +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F+R+P K V++WN++I GY      KEA+ LF  M   G  P+  T + +L ACA LG I
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383

Query: 224 DLGRWVHEFIVG--QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           D+GRW+H +I    +G+     L TSLI+MYA+CG++  A ++F+ +   ++ +W AMI 
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           G+ MHG    + +LF RMR  G++P+++TFV +LSAC+H+G++  G  +F +M Q+Y + 
Sbjct: 444 GFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMT 503

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P +EH+ CM+DL G +GL  +  + + +++  +P   +W ++L ACKMH N +LG   AE
Sbjct: 504 PKLEHYGCMIDLLGHSGLF-KEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAE 562

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
           +L+ +EPENPG YV+LSNIYA AGR + V   R ++  KG+KK  G S++E+D   + F 
Sbjct: 563 NLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFI 622

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
           +GDK HP   EIY  L+E+     +AG+VP++   + E+EEE +E +LR+HSEKLA+AFG
Sbjct: 623 IGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFG 682

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           L+ T PG  + IVKNLR+C +CH A K IS    REII RDR RFHHF+ G CSC DYW
Sbjct: 683 LISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 215/427 (50%), Gaps = 39/427 (9%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSL-VCDAGF--ITYAQRIFFCIPSPDSFLFNTL 77
           L+ L+ +HA +I  G   +   L+KL+   +    F  + YA  +F  I  P+  ++NT+
Sbjct: 46  LQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTM 105

Query: 78  IIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
              ++ ++    +L  Y  MI   + P++YTF  V+KSCA       G+ +H HV   G 
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGC 165

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDR------------------------------- 166
           D DL+V  +L++ Y ++  ++ A KVFD+                               
Sbjct: 166 DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDE 225

Query: 167 MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
           +P K VV+WN+MISGY + G  KEA+ LF  M    V PD +T V V++ACAQ G I+LG
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
           R VH +I   G   N+ +  +LI++Y++CG +  A  +F+ +   +VI+W  +I GY   
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHM 345

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY-GLLPGVE 345
               EA+ LF  M   G  PN+VT +++L ACAH G +  G  +   + +   G+     
Sbjct: 346 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASS 405

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL-- 403
               ++D++ + G +  A++    ++ +  + + W AM+    MH   D   ++   +  
Sbjct: 406 LRTSLIDMYAKCGDIEAAHQVFNSILHK--SLSSWNAMIFGFAMHGRADASFDLFSRMRK 463

Query: 404 LSVEPEN 410
           + ++P++
Sbjct: 464 IGIQPDD 470



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 33  VAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLL 92
           + G   + S+ T L+ +    G I  A ++F  I       +N +I   +    +  S  
Sbjct: 397 LKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFD 456

Query: 93  FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
            + RM    I P + TF  ++ +C+H  +L+LGR    H+F
Sbjct: 457 LFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR----HIF 493


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/583 (40%), Positives = 366/583 (62%), Gaps = 8/583 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDA---GFITY 58
           +P       ++ A   ++ L   QQ+H+  I  G    R +   L+++       G +  
Sbjct: 268 EPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCA 327

Query: 59  AQRIFFCIPSPDSFLFNTLIIRN-SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           A++IF  I   + F +  +I     K  +  ++L  +R MI++++ P+++TFS+ +K+CA
Sbjct: 328 ARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACA 387

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
           +L+ L +G  V  H    G+ S   V  +L++ YA+S  +D ARK FD + +K+++++N+
Sbjct: 388 NLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNT 447

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +I  Y +N  ++EA+ LFN + D G+   + T   +L+  A +G I  G  +H  ++  G
Sbjct: 448 VIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSG 507

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           L +N  +  +LI+MY+RCGN+  A ++F+ M + NVI+WT++I+G+  HG+ T+A+ELFH
Sbjct: 508 LKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFH 567

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
           +M   GVRPN VT++AVLSAC+H GLV EG + F SM  E+G++P +EH+ CMVD+ GR+
Sbjct: 568 KMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRS 627

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           G L+EA +F+ + +  K    VW   LGAC++H N +LG   A+ ++  EP +P  Y++L
Sbjct: 628 GSLSEAIQFI-NSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILL 686

Query: 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL 477
           SN+YA   + D V  +R  M +K L K  G S VEV+ K + F +GD SHP   EIY  L
Sbjct: 687 SNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDEL 746

Query: 478 DELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNL 537
             L  + ++ GYVP  +  +H++EEE++E  L  HSEK+A+AFGL+ TS    IR+ KNL
Sbjct: 747 QNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNL 806

Query: 538 RMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R+C DCHSAIK+IS+AT REIIVRD  RFHH K G CSC +YW
Sbjct: 807 RICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 197/384 (51%), Gaps = 14/384 (3%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           +   P    Y   LK   R +       VH  L  +        L  L+SL    G    
Sbjct: 60  QGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEK 119

Query: 59  AQRIFFCIPSP-DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           A  IF  + S  D   ++ ++   +  N    +LL +  MI +   P+ Y F+A  ++C+
Sbjct: 120 ATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACS 179

Query: 118 HLSILNLGRAVHCHVFVSGY-DSDLHVQAALVNFYAKS-NNVDVARKVFDRMPDKSVVAW 175
               +++G ++   V  +GY  SD+ V   L++ + K   ++  A KVF++MP+++ V W
Sbjct: 180 TAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTW 239

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
             MI+   Q G+A EAI LF  M   G  PD  T   V++ACA +  + LG+ +H   + 
Sbjct: 240 TLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIR 299

Query: 236 QGLDVNVVLATSLINMYARC---GNVSKAREIFDMMSELNVIAWTAMISGYGMH-GYGTE 291
            GL ++  +   LINMYA+C   G++  AR+IFD + + NV +WTAMI+GY    GY  E
Sbjct: 300 HGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEE 359

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCM 350
           A++LF  M    V PN+ TF + L ACA+   ++ G +VF  +++  +  +  V +   +
Sbjct: 360 ALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS--L 417

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEK 374
           + ++ R+G +++A K   D++ EK
Sbjct: 418 ISMYARSGRIDDARKAF-DILFEK 440



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 9/287 (3%)

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   T+S  +K C      ++G  VH  +  S    D     +L++ Y+K    + A  +
Sbjct: 64  PDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSI 123

Query: 164 FDRM-PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           F  M   + +++W++M+S +  N     A+  F  M + G  P+         AC+    
Sbjct: 124 FQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEF 183

Query: 223 IDLGRWVHEFIVGQG-LDVNVVLATSLINMYARC-GNVSKAREIFDMMSELNVIAWTAMI 280
           + +G  +  F+V  G L  +V +   LI+M+ +  G++  A ++F+ M E N + WT MI
Sbjct: 184 VSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMI 243

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +     GY  EA++LF  M   G  P+  T   V+SACA+  L+  G ++  S    +GL
Sbjct: 244 TRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLH-SQAIRHGL 302

Query: 341 LPGVEHHVCMVDLFGRA---GLLNEAYKFVKDVIGEKPAPAVWTAML 384
                   C+++++ +    G +  A K    ++        WTAM+
Sbjct: 303 TLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS--WTAMI 347



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 6/203 (2%)

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           NG   +AI     M   G +PD  T    L  C +    D+G  VHE +    L ++ V 
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 245 ATSLINMYARCGNVSKAREIFDMM-SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
             SLI++Y++CG   KA  IF +M S  ++I+W+AM+S +  +  G  A+  F  M  +G
Sbjct: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF--GRAGLLN 361
             PN   F A   AC+ A  V  G  +F  + +   L   V     ++D+F  GR  L++
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 362 EAYKFVKDVIGEKPAPAVWTAML 384
            A+K V + + E+ A   WT M+
Sbjct: 224 -AFK-VFEKMPERNA-VTWTLMI 243


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/568 (39%), Positives = 354/568 (62%), Gaps = 4/568 (0%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
           A++    +   L++V+ +  V   G++  + +K      ++ ++   +++F  +P  D  
Sbjct: 146 ALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEK---ESYYLGSLRKVFEMMPKRDIV 202

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
            +NT+I  N++     D+L+  R M  +++ P ++T S+V+   A    L  G+ +H + 
Sbjct: 203 SWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYA 262

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI 192
             +GYD+D+ + ++L++ YAK   VD + +VF  +P    ++WNS+I+G  QNG   E +
Sbjct: 263 IRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGL 322

Query: 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252
             F  M    + P+  +   ++ ACA L  + LG+ +H +I+    D NV +A++L++MY
Sbjct: 323 KFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMY 382

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
           A+CGN+  AR IFD M   ++++WTAMI GY +HG+  +A+ LF RM   GV+PN V F+
Sbjct: 383 AKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFM 442

Query: 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372
           AVL+AC+HAGLV E  + F SM Q+Y ++PG+EH+  + DL GR G L EAY+F+ D+  
Sbjct: 443 AVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHI 502

Query: 373 EKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432
           E P  +VW+ +L AC++HKN +L  +V++ L +V+P+N G YV+LSNIY+ AGR      
Sbjct: 503 E-PTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARK 561

Query: 433 VRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPE 492
           +R  M  KG+KK    S +E+  K + F  GDKSHP  + I + L  L+ +    GYV +
Sbjct: 562 LRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLD 621

Query: 493 SESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISV 552
           +   +H++EEE++ Y L  HSE+LA+ FG++ T  G TIR+ KNLR+CVDCH+A KFIS 
Sbjct: 622 TTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISK 681

Query: 553 ATNREIIVRDRLRFHHFKRGSCSCLDYW 580
              REI+VRD  RFHHFK G CSC D+W
Sbjct: 682 IVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 217/448 (48%), Gaps = 39/448 (8%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR-NSK 83
           +Q+HA ++      S S+L+ +LS+  +   +  +  IF  +PSP + L    IIR  + 
Sbjct: 25  KQLHAQILRTSLP-SPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTS 83

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
                 SL F+ +M+ S   P +  F +V+KSC  +  L  G +VH  +   G   DL+ 
Sbjct: 84  HGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYT 143

Query: 144 QAALVNFYAK----------------SNNVDV-------------ARKVFDRMPDKSVVA 174
             AL+N Y+K                    DV              RKVF+ MP + +V+
Sbjct: 144 CNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVS 203

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           WN++ISG  QNG  ++A+ +   M +  + PDS T   VL   A+  ++  G+ +H + +
Sbjct: 204 WNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAI 263

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             G D +V + +SLI+MYA+C  V  +  +F M+ + + I+W ++I+G   +G   E ++
Sbjct: 264 RNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLK 323

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEHHVCMVDL 353
            F +M    ++PN+V+F +++ ACAH   +  G ++    +R  +     V     +VD+
Sbjct: 324 FFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD--GNVFIASALVDM 381

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
           + + G +  A +++ D + E      WTAM+    +H +    + + +  + VE   P +
Sbjct: 382 YAKCGNIRTA-RWIFDKM-ELYDMVSWTAMIMGYALHGHAYDAISLFKR-MEVEGVKPNY 438

Query: 414 YVMLSNIYAL--AGRMDRVEVVRNIMIQ 439
              ++ + A   AG +D      N M Q
Sbjct: 439 VAFMAVLTACSHAGLVDEAWKYFNSMTQ 466


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/521 (45%), Positives = 344/521 (66%), Gaps = 12/521 (2%)

Query: 67  PSPDSF-LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           P+P S  L++   +RN   N    SL  +R MI S+ +      +A++   A   + + G
Sbjct: 159 PTPSSSPLWHFGYVRN---NLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRG 215

Query: 126 RAVHCHVFVS--GYDSDLHVQAALVNFYAK--SNNVDVARKVFDRMPDKSVVAWNSMISG 181
                H  ++  G++ +  V   +++ YAK  S +++VARKVFD M ++ VV+WNSMI+ 
Sbjct: 216 VTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIAL 274

Query: 182 YEQNGFAKEAIGLFNLMRDFG--VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           Y QNG + EAIGL++ M + G  +  ++     VL ACA  G I  G+ +H  +V  GL+
Sbjct: 275 YAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLE 334

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            NV + TS+++MY++CG V  A   F  + E N+++W+AMI+GYGMHG G EA+E+F  M
Sbjct: 335 ENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEM 394

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
           +  G+RPN +TF++VL+AC+HAGL+ EG   + +M+QE+G+  GVEH+ CMVDL GRAG 
Sbjct: 395 KRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGC 454

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L+EAY  +K+ +  KP  A+W A+L AC++HKN +L     + L  ++  N G+YV+LSN
Sbjct: 455 LDEAYSLIKE-MKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSN 513

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           IYA A     VE +R ++  + ++K  GYS+ E+  K YLF +GDKSHP   EIY YL++
Sbjct: 514 IYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEK 573

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           L+ R +EAGYVP + S +H+L+EEE+E +LR HSEKLA+AF LM + P   I I+KNLR+
Sbjct: 574 LLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRV 633

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCH+A+KFI+  T REII+RD  RFHHFK G CSC DYW
Sbjct: 634 CSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 674


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/562 (40%), Positives = 345/562 (61%), Gaps = 3/562 (0%)

Query: 21  LKPLQQVHAHLIVAGY-GRSR-SMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           LK  + +HA+++  G  G+S   + T L+ +      + YA+R+F  +       +  +I
Sbjct: 241 LKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMI 300

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
                 N   + +  + +M+   + P+  T  +++K C     L LG+ +H     +G+ 
Sbjct: 301 AAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFT 360

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
             L +  A ++ Y K  +V  AR VFD    K ++ W++MIS Y QN    EA  +F  M
Sbjct: 361 LSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHM 420

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
              G+ P+  T V +L  CA+ G +++G+W+H +I  QG+  +++L TS ++MYA CG++
Sbjct: 421 TGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDI 480

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
             A  +F   ++ ++  W AMISG+ MHG+G  A+ELF  M A GV PN++TF+  L AC
Sbjct: 481 DTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHAC 540

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           +H+GL+QEG R+F  M  E+G  P VEH+ CMVDL GRAGLL+EA++ +K  +  +P  A
Sbjct: 541 SHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKS-MPMRPNIA 599

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
           V+ + L ACK+HKN  LG   A+  LS+EP   G+ V++SNIYA A R   V  +R  M 
Sbjct: 600 VFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMK 659

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
            +G+ K  G S++EV+   + F MGD+ HP+  ++Y+ +DE+  +  +AGY P+    +H
Sbjct: 660 DEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLH 719

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
            +++E++  +L YHSEKLA+A+GL+ T+PG+ IRIVKNLR+C DCH+A K +S    REI
Sbjct: 720 NIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREI 779

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           IVRDR RFHHFK GSCSC DYW
Sbjct: 780 IVRDRNRFHHFKEGSCSCCDYW 801



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 201/390 (51%), Gaps = 7/390 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           Q+VH  ++  G+     +   L+ +  + G +  A+ +F  I + D   ++T+I    ++
Sbjct: 144 QEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRS 203

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY--DSDLH 142
               ++L   R M V  + PS     ++    A L+ L LG+A+H +V  +G    S + 
Sbjct: 204 GLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVP 263

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           +  AL++ Y K  N+  AR+VFD +   S+++W +MI+ Y       E + LF  M   G
Sbjct: 264 LCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEG 323

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           + P+  T + ++  C   G ++LG+ +H F +  G  +++VLAT+ I+MY +CG+V  AR
Sbjct: 324 MFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSAR 383

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
            +FD     +++ W+AMIS Y  +    EA ++F  M   G+RPN  T V++L  CA AG
Sbjct: 384 SVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAG 443

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
            ++ G  + + + ++ G+   +      VD++   G ++ A++   +        ++W A
Sbjct: 444 SLEMGKWIHSYIDKQ-GIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRD--ISMWNA 500

Query: 383 MLGACKMHKNFDLGVEVAEHL--LSVEPEN 410
           M+    MH + +  +E+ E +  L V P +
Sbjct: 501 MISGFAMHGHGEAALELFEEMEALGVTPND 530



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/440 (27%), Positives = 216/440 (49%), Gaps = 29/440 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRS-RSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           L   QQ+H H I      S R  L  L S   +A                 SFL  + I 
Sbjct: 56  LNETQQLHGHFIKTSSNCSYRVPLAALESYSSNAAI--------------HSFLITSYI- 100

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
              K N   D+   Y  M  ++    N+   +V+K+C  +    LG+ VH  V  +G+  
Sbjct: 101 ---KNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHG 157

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D+ V  AL+  Y++  ++ +AR +FD++ +K VV+W++MI  Y+++G   EA+ L   M 
Sbjct: 158 DVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMH 217

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV--GQGLDVNVVLATSLINMYARCGN 257
              V P     + +    A+L D+ LG+ +H +++  G+     V L T+LI+MY +C N
Sbjct: 218 VMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCEN 277

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           ++ AR +FD +S+ ++I+WTAMI+ Y       E V LF +M   G+ PN +T ++++  
Sbjct: 278 LAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKE 337

Query: 318 CAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           C  AG ++ G  + A ++R  + L   +      +D++G+ G +  A + V D    K  
Sbjct: 338 CGTAGALELGKLLHAFTLRNGFTL--SLVLATAFIDMYGKCGDVRSA-RSVFDSFKSKDL 394

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLL--SVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
             +W+AM+ +   +   D   ++  H+    + P N    V L  I A AG ++  + + 
Sbjct: 395 -MMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRP-NERTMVSLLMICAKAGSLEMGKWIH 452

Query: 435 NIMIQKGLKKHVGYSTVEVD 454
           + + ++G+K  +   T  VD
Sbjct: 453 SYIDKQGIKGDMILKTSFVD 472


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/555 (42%), Positives = 351/555 (63%), Gaps = 2/555 (0%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           + HA  I +G     ++ T +L   C  G I  A+ +F  +P+ +S  +N +I   ++  
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNG 241

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
            S ++L  + RM+   +  ++ +  A +++C  L  L+ G  VH  +   G DS++ V  
Sbjct: 242 DSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMN 301

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           AL+  Y+K   VD+A  VFD +  ++ V+WN+MI G  QNG +++A+ LF  M+   V P
Sbjct: 302 ALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKP 361

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           DS T V V+ A A + D    RW+H + +   LD +V + T+LI+MYA+CG V+ AR +F
Sbjct: 362 DSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILF 421

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           +   E +VI W AMI GYG HG+G  AVELF  M++ G+ PN  TF++VLSAC+HAGLV 
Sbjct: 422 NSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVD 481

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           EG   F SM+++YGL PG+EH+  MVDL GRAG L+EA+ F++ +  + P  +V+ AMLG
Sbjct: 482 EGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMD-PGLSVYGAMLG 540

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           ACK+HKN +L  E A+ +  + P+   ++V+L+NIYA A     V  VR  M + GL+K 
Sbjct: 541 ACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKT 600

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
            G+S +++  + + F  G  +H    EIY  L +L+   +  GYVP+++S +H++E++ +
Sbjct: 601 PGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDS-IHDVEDDVK 659

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
              L  HSEKLA+AFGL+RT+PG TI+I KNLR+C DCH+A K IS+ T REII+RD  R
Sbjct: 660 AQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQR 719

Query: 566 FHHFKRGSCSCLDYW 580
           FHHFK G CSC DYW
Sbjct: 720 FHHFKDGKCSCGDYW 734



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 177/343 (51%), Gaps = 5/343 (1%)

Query: 90  SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
           +L  +  M  +   P   TF++++K CA    L  GRAVH  +   G DS+     AL N
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVNPDST 208
            YAK      AR+VFDRMP +  VAWN++++GY +NG A+ A+ +   M++  G  PDS 
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           T V VL ACA    +   R  H F +  GL+  V +AT++++ Y +CG++  AR +FD M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
              N ++W AMI GY  +G   EA+ LF+RM   GV   +V+ +A L AC   G + EG 
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
           RV   +    GL   V     ++ ++ +   ++ A     ++  ++     W AM+  C 
Sbjct: 283 RVH-ELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDEL--DRRTQVSWNAMILGCA 339

Query: 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
            +   +  V +    + +E   P  + ++S I ALA   D ++
Sbjct: 340 QNGCSEDAVRLFTR-MQLENVKPDSFTLVSVIPALADISDPLQ 381



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 203/441 (46%), Gaps = 39/441 (8%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRN 81
           + VHA L   G        T L ++         A+R+F  +P  D   +N L+    RN
Sbjct: 79  RAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARN 138

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
             A  + +  +  R        P + T  +V+ +CA+   L   R  H     SG +  +
Sbjct: 139 GLARMAME--MVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELV 196

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
           +V  A+++ Y K  ++  AR VFD MP K+ V+WN+MI GY QNG ++EA+ LFN M + 
Sbjct: 197 NVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEE 256

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           GV+    + +  L AC +LG +D G  VHE +V  GLD NV +  +LI MY++C  V  A
Sbjct: 257 GVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLA 316

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
             +FD +     ++W AMI G   +G   +AV LF RM+   V+P++ T V+V+ A A  
Sbjct: 317 SHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADI 376

Query: 322 GLVQE-----GHRVFASMRQEYGLLPGV---------------------EHHV----CMV 351
               +     G+ +   + Q+  +L  +                     E HV     M+
Sbjct: 377 SDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMI 436

Query: 352 DLFGRAGLLNEAYKFVKDV--IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
             +G  G    A +  +++  IG  P    + ++L AC      D G E    +      
Sbjct: 437 HGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGL 496

Query: 410 NPG--HYVMLSNIYALAGRMD 428
            PG  HY  + ++   AG++D
Sbjct: 497 EPGMEHYGTMVDLLGRAGKLD 517


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/555 (42%), Positives = 351/555 (63%), Gaps = 2/555 (0%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           + HA  I +G     ++ T +L   C  G I  A+ +F  +P+ +S  +N +I   ++  
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNG 241

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
            S ++L  + RM+   +  ++ +  A +++C  L  L+ G  VH  +   G DS++ V  
Sbjct: 242 DSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMN 301

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           AL+  Y+K   VD+A  VFD +  ++ V+WN+MI G  QNG +++A+ LF  M+   V P
Sbjct: 302 ALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKP 361

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           DS T V V+ A A + D    RW+H + +   LD +V + T+LI+MYA+CG V+ AR +F
Sbjct: 362 DSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILF 421

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           +   E +VI W AMI GYG HG+G  AVELF  M++ G+ PN  TF++VLSAC+HAGLV 
Sbjct: 422 NSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVD 481

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           EG   F SM+++YGL PG+EH+  MVDL GRAG L+EA+ F++ +  + P  +V+ AMLG
Sbjct: 482 EGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMD-PGLSVYGAMLG 540

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           ACK+HKN +L  E A+ +  + P+   ++V+L+NIYA A     V  VR  M + GL+K 
Sbjct: 541 ACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKT 600

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
            G+S +++  + + F  G  +H    EIY  L +L+   +  GYVP+++S +H++E++ +
Sbjct: 601 PGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDS-IHDVEDDVK 659

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
              L  HSEKLA+AFGL+RT+PG TI+I KNLR+C DCH+A K IS+ T REII+RD  R
Sbjct: 660 AQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQR 719

Query: 566 FHHFKRGSCSCLDYW 580
           FHHFK G CSC DYW
Sbjct: 720 FHHFKDGKCSCGDYW 734



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 177/343 (51%), Gaps = 5/343 (1%)

Query: 90  SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
           +L  +  M  +   P   TF++++K CA    L  GRAVH  +   G DS+     AL N
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVNPDST 208
            YAK      AR+VFDRMP +  VAWN++++GY +NG A+ A+ +   M++  G  PDS 
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           T V VL ACA    +   R  H F +  GL+  V +AT++++ Y +CG++  AR +FD M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
              N ++W AMI GY  +G   EA+ LF+RM   GV   +V+ +A L AC   G + EG 
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
           RV   +    GL   V     ++ ++ +   ++ A     ++  ++     W AM+  C 
Sbjct: 283 RVH-ELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDEL--DRRTQVSWNAMILGCA 339

Query: 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
            +   +  V +    + +E   P  + ++S I ALA   D ++
Sbjct: 340 QNGCSEDAVRLFTR-MQLENVKPDSFTLVSVIPALADISDPLQ 381



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 203/441 (46%), Gaps = 39/441 (8%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRN 81
           + VHA L   G        T L ++         A+R+F  +P  D   +N L+    RN
Sbjct: 79  RAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARN 138

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
             A  + +  +  R        P + T  +V+ +CA+   L   R  H     SG +  +
Sbjct: 139 GLARMAME--MVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELV 196

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
           +V  A+++ Y K  ++  AR VFD MP K+ V+WN+MI GY QNG ++EA+ LFN M + 
Sbjct: 197 NVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEE 256

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           GV+    + +  L AC +LG +D G  VHE +V  GLD NV +  +LI MY++C  V  A
Sbjct: 257 GVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLA 316

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
             +FD +     ++W AMI G   +G   +AV LF RM+   V+P++ T V+V+ A A  
Sbjct: 317 SHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADI 376

Query: 322 GLVQE-----GHRVFASMRQEYGLLPGV---------------------EHHV----CMV 351
               +     G+ +   + Q+  +L  +                     E HV     M+
Sbjct: 377 SDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMI 436

Query: 352 DLFGRAGLLNEAYKFVKDV--IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
             +G  G    A +  +++  IG  P    + ++L AC      D G E    +      
Sbjct: 437 HGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGL 496

Query: 410 NPG--HYVMLSNIYALAGRMD 428
            PG  HY  + ++   AG++D
Sbjct: 497 EPGMEHYGTMVDLLGRAGKLD 517


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/580 (40%), Positives = 360/580 (62%), Gaps = 5/580 (0%)

Query: 4   KQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           ++P S    ++L A   LK L+    +H +   AG+    ++ T +L      G +  A+
Sbjct: 239 QKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSAR 298

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
            +F  + S +   +NT+I   ++   S ++   + +M+   + P+N +    + +CA+L 
Sbjct: 299 LVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLG 358

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L  GR VH  +       D+ V  +L++ Y+K   VD+A  VF  +  K+VV WN+MI 
Sbjct: 359 DLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMIL 418

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY QNG   EA+ LF  M+   + PDS T V V+ A A L      +W+H   +   +D 
Sbjct: 419 GYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDK 478

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           NV + T+LI+ +A+CG +  AR++FD+M E +VI W AMI GYG +G+G EA++LF+ M+
Sbjct: 479 NVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQ 538

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
              V+PN +TF++V++AC+H+GLV+EG   F SM++ YGL P ++H+  MVDL GRAG L
Sbjct: 539 NGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRL 598

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
           ++A+KF++D +  KP   V  AMLGAC++HKN +LG + A+ L  ++P++ G++V+L+N+
Sbjct: 599 DDAWKFIQD-MPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANM 657

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA A   D+V  VR  M +KG++K  G S VE+  + + F  G  +HP +  IY YL+ L
Sbjct: 658 YASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETL 717

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
               + AGYVP++ S +H++EE+ +E  L  HSE+LA+AFGL+ T  G  I I KNLR+C
Sbjct: 718 GDEMKAAGYVPDTNS-IHDVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVC 776

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH A K+IS+ T REIIVRD  RFHHFK G CSC DYW
Sbjct: 777 GDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 112/317 (35%), Positives = 176/317 (55%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           +L+    LK L Q+   +I  G+       TKL+SL C    IT A R+F  +      L
Sbjct: 50  LLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVL 109

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           ++T++   +K +   D++ FY RM    + P  Y F+ +++       L  GR +H  V 
Sbjct: 110 YHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVI 169

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            +G+ S+L    A+VN YAK   ++ A K+F+RMP + +V+WN++++GY QNGFA+ A+ 
Sbjct: 170 TNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQ 229

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           +   M++ G  PDS T V VL A A L  + +GR +H +    G +  V +AT++++ Y 
Sbjct: 230 VVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYF 289

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +CG+V  AR +F  MS  NV++W  MI GY  +G   EA   F +M   GV P NV+ + 
Sbjct: 290 KCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMG 349

Query: 314 VLSACAHAGLVQEGHRV 330
            L ACA+ G ++ G  V
Sbjct: 350 ALHACANLGDLERGRYV 366



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 229/460 (49%), Gaps = 41/460 (8%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+  +++H  +I  G+  +   +T +++L      I  A ++F  +P  D   +NT++  
Sbjct: 158 LRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAG 217

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            ++  F+  ++    +M  +   P + T  +V+ + A L  L +GR++H + F +G++  
Sbjct: 218 YAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYM 277

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           ++V  A+++ Y K  +V  AR VF  M  ++VV+WN+MI GY QNG ++EA   F  M D
Sbjct: 278 VNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLD 337

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            GV P + + +  L ACA LGD++ GR+VH  +  + +  +V +  SLI+MY++C  V  
Sbjct: 338 EGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDI 397

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A  +F  +    V+ W AMI GY  +G   EA+ LF  M++H ++P++ T V+V++A A 
Sbjct: 398 AASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALAD 457

Query: 321 AGLVQEGHRV----------------------------FASMRQEYGLLPGVEHHV---- 348
             + ++   +                              + R+ + L+   E HV    
Sbjct: 458 LSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQ--ERHVITWN 515

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGE--KPAPAVWTAMLGACKMHKNFDLGVEVAEHL--- 403
            M+D +G  G   EA     ++     KP    + +++ AC      + G+   E +   
Sbjct: 516 AMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKEN 575

Query: 404 LSVEPENPGHYVMLSNIYALAGRMDRV-EVVRNIMIQKGL 442
             +EP    HY  + ++   AGR+D   + ++++ ++ G+
Sbjct: 576 YGLEP-TMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGI 614


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/578 (41%), Positives = 355/578 (61%), Gaps = 4/578 (0%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P++  +  +LKA  RL  LQ   ++H  ++  G+     + T L+ L    G++  A ++
Sbjct: 110 PNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKV 169

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  IP  +   +  +I          +++  +RR++  N++P ++T   V+ +C  L  L
Sbjct: 170 FDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDL 229

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           N G  +H  +   G   ++ V  +LV+ YAK  N++ AR VFD MP+K +V+W +MI GY
Sbjct: 230 NSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGY 289

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
             NG  KEAI LF  M+   V PD  T V VL+ACA+LG ++LG WV   +       N 
Sbjct: 290 ALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNP 349

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           VL T+LI++YA+CG++S+A E+F  M E + + W A+ISG  M+GY   +  LF ++   
Sbjct: 350 VLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKL 409

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G++P+  TF+ +L  C HAGLV EG R F SM + + L P +EH+ CMVDL GRAGLL+E
Sbjct: 410 GIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDE 469

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A++ ++++  E  A  VW A+LGAC++H++  L     + L+ +EP N G+YV+LSNIY+
Sbjct: 470 AHQLIRNMPMEANA-IVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYS 528

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
              + D    VR  M +K ++K  G S +EVD   + F +GDK HP + +IY  LDEL  
Sbjct: 529 ANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTK 588

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           + + AGYVP ++  + ++EEEE+E+ L  HSEKLA+AFGL+  +P   IR+VKNLR+C D
Sbjct: 589 KMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGD 648

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH AIK IS  T REI VRD  RFH F+ GSCSC DYW
Sbjct: 649 CHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 132/350 (37%), Positives = 207/350 (59%), Gaps = 5/350 (1%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN 101
           +L  +L    D     Y + +F  I  P+ FL+NT+I      +   D++ FY  M    
Sbjct: 48  LLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEG 107

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
             P+N+TF  V+K+CA L  L LG  +H  V   G+D D+ V+ +LV  YAK   ++ A 
Sbjct: 108 FLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAH 167

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           KVFD +PDK+VV+W ++ISGY   G  +EAI +F  + +  + PDS T V VL+AC QLG
Sbjct: 168 KVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLG 227

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           D++ G W+H+ I+  G+  NV + TSL++MYA+CGN+ KAR +FD M E ++++W AMI 
Sbjct: 228 DLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQ 287

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGL 340
           GY ++G   EA++LF +M+   V+P+  T V VLSACA  G ++ G  V   + R E+  
Sbjct: 288 GYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLY 347

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            P +     ++DL+ + G ++ A++  K +  ++    VW A++    M+
Sbjct: 348 NPVL--GTALIDLYAKCGSMSRAWEVFKGM--KEKDRVVWNAIISGLAMN 393


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/583 (40%), Positives = 366/583 (62%), Gaps = 8/583 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDA---GFITY 58
           +P       ++ A   ++ L   QQ+H+  I  G    R +   L+++       G +  
Sbjct: 268 EPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCA 327

Query: 59  AQRIFFCIPSPDSFLFNTLIIRN-SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           A++IF  I   + F +  +I     K  +  ++L  +R MI++++ P+++TFS+ +K+CA
Sbjct: 328 ARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACA 387

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
           +L+ L +G  V  H    G+ S   V  +L++ YA+S  +D ARK FD + +K+++++N+
Sbjct: 388 NLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNT 447

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +I  Y +N  ++EA+ LFN + D G+   + T   +L+  A +G I  G  +H  ++  G
Sbjct: 448 VIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSG 507

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           L +N  +  +LI+MY+RCGN+  A ++F+ M + NVI+WT++I+G+  HG+ T+A+ELFH
Sbjct: 508 LKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFH 567

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
           +M   GVRPN VT++AVLSAC+H GLV EG + F SM  E+G++P +EH+ C+VD+ GR+
Sbjct: 568 KMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRS 627

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           G L+EA +F+ + +  K    VW   LGAC++H N +LG   A+ ++  EP +P  Y++L
Sbjct: 628 GSLSEAIQFI-NSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILL 686

Query: 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL 477
           SN+YA   + D V  +R  M +K L K  G S VEV+ K + F +GD SHP   EIY  L
Sbjct: 687 SNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDEL 746

Query: 478 DELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNL 537
             L  + ++ GYVP  +  +H++EEE++E  L  HSEK+A+AFGL+ TS    IR+ KNL
Sbjct: 747 QNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNL 806

Query: 538 RMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R+C DCHSAIK+IS+AT REIIVRD  RFHH K G CSC +YW
Sbjct: 807 RICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 197/384 (51%), Gaps = 14/384 (3%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           +   P    Y   LK   R +       VH  L  +        L  L+SL    G    
Sbjct: 60  QGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEK 119

Query: 59  AQRIFFCIPSP-DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           A  IF  + S  D   ++ ++   +  N    +LL +  MI +   P+ Y F+A  ++C+
Sbjct: 120 ATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACS 179

Query: 118 HLSILNLGRAVHCHVFVSGY-DSDLHVQAALVNFYAKS-NNVDVARKVFDRMPDKSVVAW 175
               +++G ++   V  +GY  SD+ V   L++ + K   ++  A KVF++MP+++ V W
Sbjct: 180 TAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTW 239

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
             MI+   Q G+A EAI LF  M   G  PD  T   V++ACA +  + LG+ +H   + 
Sbjct: 240 TLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIR 299

Query: 236 QGLDVNVVLATSLINMYARC---GNVSKAREIFDMMSELNVIAWTAMISGYGMH-GYGTE 291
            GL ++  +   LINMYA+C   G++  AR+IFD + + NV +WTAMI+GY    GY  E
Sbjct: 300 HGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEE 359

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCM 350
           A++LF  M    V PN+ TF + L ACA+   ++ G +VF  +++  +  +  V +   +
Sbjct: 360 ALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS--L 417

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEK 374
           + ++ R+G +++A K   D++ EK
Sbjct: 418 ISMYARSGRIDDARKAF-DILFEK 440



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 132/287 (45%), Gaps = 9/287 (3%)

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   T+S  +K C      ++G  VH  +  S    D     +L++ Y+K    + A  +
Sbjct: 64  PDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSI 123

Query: 164 FDRM-PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           F  M   + +++W++M+S +  N     A+  F  M + G  P+         AC+    
Sbjct: 124 FRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEF 183

Query: 223 IDLGRWVHEFIVGQG-LDVNVVLATSLINMYARC-GNVSKAREIFDMMSELNVIAWTAMI 280
           + +G  +  F++  G L  +V +   LI+M+ +  G++  A ++F+ M E N + WT MI
Sbjct: 184 VSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMI 243

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +     GY  EA++LF  M   G  P+  T   V+SACA+  L+  G ++  S    +GL
Sbjct: 244 TRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLH-SQAIRHGL 302

Query: 341 LPGVEHHVCMVDLFGRA---GLLNEAYKFVKDVIGEKPAPAVWTAML 384
                   C+++++ +    G +  A K    ++        WTAM+
Sbjct: 303 TLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS--WTAMI 347



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 6/203 (2%)

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           NG   +AI     M   G +PD  T    L  C +    D+G  VHE +    L ++ V 
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 245 ATSLINMYARCGNVSKAREIFDMM-SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
             SLI++Y++CG   KA  IF +M S  ++I+W+AM+S +  +  G  A+  F  M  +G
Sbjct: 104 LNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF--GRAGLLN 361
             PN   F A   AC+ A  V  G  +F  + +   L   V     ++D+F  GR  L++
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 362 EAYKFVKDVIGEKPAPAVWTAML 384
            A+K V + + E+ A   WT M+
Sbjct: 224 -AFK-VFEKMPERNA-VTWTLMI 243


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/615 (39%), Positives = 357/615 (58%), Gaps = 41/615 (6%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLV------------ 50
           P+S ++  +LK+  + K  +   Q+HA ++  G G  R + T L+S+             
Sbjct: 62  PNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKV 121

Query: 51  -----------CDAGFITYAQR--------IFFCIPSPDSFLFNTLIIRNSKANFSTDSL 91
                      C A    YA R        +F  I   D   +N +I    +     ++L
Sbjct: 122 FDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEAL 181

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS----GYDSDLHVQAAL 147
             ++ M+ +N+ P   T  +V+ +CA    + LGR VH  V       G+ S L +  AL
Sbjct: 182 ELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNAL 241

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
           ++ Y+K  +V+ A  +F+ +  K VV+WN++I GY      KEA+ LF  M   G  P+ 
Sbjct: 242 IDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPND 301

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQ--GLDVNVVLATSLINMYARCGNVSKAREIF 265
            T + VL ACA LG ID+GRW+H +I  +  G+     L TSLI+MYA+CG++  A ++F
Sbjct: 302 VTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVF 361

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           + M   ++ +W AMI G+ MHG    A +LF RMR + V P+++TFV +LSAC+H+GL+ 
Sbjct: 362 NSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLD 421

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            G ++F SM Q+Y L P +EH+ CM+DL G +GL  EA + +  +  E P   +W ++L 
Sbjct: 422 LGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPME-PDGVIWCSLLK 480

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           ACK H N +L    A+ L+ +EPEN G YV+LSNIYA AGR + V  VR ++  KG+KK 
Sbjct: 481 ACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKV 540

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
            G S++EVD   + F +GDK HP   EIY  L+E+  +  EAG+ P++   + E+EEE +
Sbjct: 541 PGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWK 600

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
           E +LR+HSEKLA+AFGL+ T PG  + IVKNLR+C +CH A K IS    REI+ RDR R
Sbjct: 601 EGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTR 660

Query: 566 FHHFKRGSCSCLDYW 580
           FHHF+ G CSC DYW
Sbjct: 661 FHHFRDGVCSCCDYW 675



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 202/401 (50%), Gaps = 40/401 (9%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           + YA  +F  I  P+  ++NT++  ++ ++    +L  Y RM+     P++Y+F  ++KS
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK-------------SNNVDV--- 159
           CA       GR +H  V   G   D +V  +L++ YA+             S++ DV   
Sbjct: 74  CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSC 133

Query: 160 ---------------ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
                          ARKVFD + ++ VV+WN+MI+GY +NG  +EA+ LF  M    V 
Sbjct: 134 TALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVR 193

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFI----VGQGLDVNVVLATSLINMYARCGNVSK 260
           PD  T V V++ACAQ G I+LGR VH ++       G   ++ +  +LI++Y++CG+V  
Sbjct: 194 PDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVET 253

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A  +F+ +S  +V++W  +I GY       EA+ LF  M   G  PN+VT ++VL ACAH
Sbjct: 254 AFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAH 313

Query: 321 AGLVQEGHRVFASMRQEY-GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
            G +  G  +   + ++  G+         ++D++ + G +  A++    ++    + + 
Sbjct: 314 LGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYR--SLSS 371

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLS 418
           W AM+    MH   +   ++   +    VEP++     +LS
Sbjct: 372 WNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLS 412


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/571 (41%), Positives = 359/571 (62%), Gaps = 3/571 (0%)

Query: 12  EAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS 71
           E +  +  + K L+++HA ++  G+    S+LT+LL  +   G + YA+++F  +  P  
Sbjct: 15  ELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRI 74

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           FL+NTL     +     +SLL Y++M    + P  +T+  V+K+ + L   + G A+H H
Sbjct: 75  FLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAH 134

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           V   G+     V   LV  Y K   +  A  +F+ M  K +VAWN+ ++   Q G +  A
Sbjct: 135 VVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIA 194

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           +  FN M    V  DS T V +L+AC QLG +++G  +++    + +D N+++  + ++M
Sbjct: 195 LEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDM 254

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           + +CGN   AR +F+ M + NV++W+ MI GY M+G   EA+ LF  M+  G+RPN VTF
Sbjct: 255 HLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTF 314

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQ--EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           + VLSAC+HAGLV EG R F+ M Q  +  L P  EH+ CMVDL GR+GLL EAY+F+K 
Sbjct: 315 LGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKK 374

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
           +  E P   +W A+LGAC +H++  LG +VA+ L+   P+   ++V+LSNIYA AG+ D 
Sbjct: 375 MPVE-PDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDC 433

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
           V+ VR+ M + G KK   YS+VE + K + F+ GDKSHP +  IY+ LDE++ + R+ GY
Sbjct: 434 VDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGY 493

Query: 490 VPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKF 549
           VP++ S  H++E EE+E SL +HSEKLA+AFGL++  PG  IR++KNLR C DCH+  KF
Sbjct: 494 VPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKF 553

Query: 550 ISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +S  T+ EII+RD+ RFHHF+ G CSC ++W
Sbjct: 554 VSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/542 (44%), Positives = 352/542 (64%), Gaps = 7/542 (1%)

Query: 41  SMLTKLLSLVCDAG-FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV 99
           S+ T LLS V  A   ++YA+ +F  IPSPD+  +NT IIR+    F + SL ++  M  
Sbjct: 22  SLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNT-IIRSHSRFFPSHSLSYFFSMRS 80

Query: 100 SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV 159
           + I   N+TF  V+K+C+ L I NL   +H  +   G  SD+ VQ AL+  Y    ++++
Sbjct: 81  NGIPLDNFTFPFVLKACSRLQI-NL--HLHSLIVKYGLGSDIFVQNALICVYGYCGSLEM 137

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR-DFGVNPDSTTCVCVLAACA 218
           A KVFD M ++  V+W+++I+ +  NG+A EA+ LF  M+ +  V PD  T + V++A +
Sbjct: 138 AVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAIS 197

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
            LGD++LGRWV  FI   G  V+V L T+LI+M++RCG++ ++  +F+ M+  NV+ WTA
Sbjct: 198 HLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTA 257

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           +I+G G+HG   EA+ +FH MR  GV+P+ VTF  VL AC+H GLV+EG  +F S+R+ Y
Sbjct: 258 LINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVY 317

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
           G+ P ++H+ CMVD+ GRAGLLNEAY FV+  +  KP   +W  +LGAC  H N  L  +
Sbjct: 318 GMDPLLDHYGCMVDILGRAGLLNEAYDFVER-MPMKPNSIIWRTLLGACVNHNNLGLAEK 376

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458
           V   +  +     G  V+LSN+Y  AGR      +R+ M +K + K  G S++ VDQ  +
Sbjct: 377 VKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIH 436

Query: 459 LFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLAL 518
            F  GD SHP + +I ++L  ++G  R  GY+ ++++ +H++EEEERE+SL YHSEKLA+
Sbjct: 437 EFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAV 496

Query: 519 AFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLD 578
           AF ++      TIRI+KNLR+C DCHS +K ISV   R+II+RDR RFHHF++G CSC D
Sbjct: 497 AFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHD 556

Query: 579 YW 580
           YW
Sbjct: 557 YW 558



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 169/372 (45%), Gaps = 40/372 (10%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
            +  +LKA  RL+    +H+ ++  G G    +   L+ +    G +  A ++F  +   
Sbjct: 89  TFPFVLKACSRLQINLHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSER 148

Query: 70  DSFLFNTLIIRNSKANFSTDSL-LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
           DS  ++T+I       +++++L LF +  +   + P   T  +VI + +HL  L LGR V
Sbjct: 149 DSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWV 208

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
              +   G+   + +  AL++ +++  ++D +  VF++M  ++V+ W ++I+G   +G +
Sbjct: 209 RAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRS 268

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
            EA+ +F+ MR  GV PD  T   VL AC+  G           +V +G D+        
Sbjct: 269 MEALAMFHSMRKSGVQPDYVTFSGVLVACSHGG-----------LVKEGWDI-------- 309

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
                        R+++ M   L+   +  M+   G  G   EA +   RM    ++PN+
Sbjct: 310 ---------FESIRKVYGMDPLLD--HYGCMVDILGRAGLLNEAYDFVERM---PMKPNS 355

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA----Y 364
           + +  +L AC +   +    +V A + +      G    V + +++G AG   E      
Sbjct: 356 IIWRTLLGACVNHNNLGLAEKVKAKISKISSSQNG--DLVLLSNVYGAAGRWVEKASIRS 413

Query: 365 KFVKDVIGEKPA 376
           K  +  IG++P 
Sbjct: 414 KMREKRIGKEPG 425


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/539 (41%), Positives = 339/539 (62%), Gaps = 3/539 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L++     G I  A ++F  IP  D   +N  I   ++     ++L  +++M+ +N+ 
Sbjct: 173 TALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVR 232

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   T   V+ +CA    + LGR VH  +   G+  +L +  AL++ Y+K   ++ A  +
Sbjct: 233 PDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGL 292

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F  + +K V++WN++I GY      KEA+ LF  M   G  P+  T + +L+ACA LG I
Sbjct: 293 FQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAI 352

Query: 224 DLGRWVHEFIVG--QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           D+GRW+H +I    +G+     L TSLI+MYA+CG++  A+++FD M   ++ +W AMI 
Sbjct: 353 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIF 412

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           G+ MHG    A ++F RMR +G+ P+++TFV +LSAC+H+G++  G  +F SM ++Y L+
Sbjct: 413 GFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLM 472

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P +EH+ CM+DL G +GL  EA K + + +  +P   +W ++L ACKMH N +LG   A+
Sbjct: 473 PKLEHYGCMIDLXGHSGLFKEAEKMI-NTMEMEPDGVIWCSLLKACKMHGNVELGESYAQ 531

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
           +L+ +EPENPG YV+LSNIYA A R + V   R ++  KG+KK  G S++E+D   + F 
Sbjct: 532 NLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFI 591

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
           +GDK HP   EIY  L+E+     EAG+VP++   + E+EEE +E +LR+HSEKLA+AFG
Sbjct: 592 IGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFG 651

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           L+ T PG  + IVKNLR+C +CH A K IS    REII RDR RFHHF+ G CSC DYW
Sbjct: 652 LISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/443 (29%), Positives = 219/443 (49%), Gaps = 39/443 (8%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL-VCDAGF--ITYAQRIFFCIPSP 69
           ++L     L+ L+ +HA +I  G   +   L+KLL   V    F  + YA  +F  I  P
Sbjct: 7   SLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEP 66

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
              ++NT+   ++ ++    +L  Y  M+   + P++YTF  ++KSCA       G+ +H
Sbjct: 67  XLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLH 126

Query: 130 CHVFVSGYDSDLHVQAALVNFYA-------------KSNNVDV----------------- 159
             V   G+D DL++  +L++ Y              KS++ DV                 
Sbjct: 127 GQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIE 186

Query: 160 -ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
            A K+FD +P K VV+WN+ ISGY + G  KEA+ LF  M    V PD +T V VL+ACA
Sbjct: 187 SAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACA 246

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
           Q G I+LGR VH +I   G   N+ +  +LI++Y++CG +  A  +F  +S  +VI+W  
Sbjct: 247 QSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNT 306

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           +I GY       EA+ LF  M   G +PN+VT +++LSACAH G +  G  +   + +  
Sbjct: 307 LIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRL 366

Query: 339 -GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
            G+         ++D++ + G +  A +    ++    + + W AM+    MH   +   
Sbjct: 367 KGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNR--SLSSWNAMIFGFAMHGRANAAF 424

Query: 398 EVAEHLLS--VEPENPGHYVMLS 418
           ++   +    +EP++     +LS
Sbjct: 425 DIFSRMRKNGIEPDDITFVGLLS 447



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 97/232 (41%), Gaps = 44/232 (18%)

Query: 4   KQPHSPAYEAILKAGPRLKPL---QQVHAHLI--VAGYGRSRSMLTKLLSLVCDAGFITY 58
           ++P+     +IL A   L  +   + +H ++   + G   + S+ T L+ +    G I  
Sbjct: 332 EKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEA 391

Query: 59  AQRIFFCIPSPDSFLFNTLII---RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           AQ++F  + +     +N +I     + +AN + D    + RM  + I P + TF  ++ +
Sbjct: 392 AQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFD---IFSRMRKNGIEPDDITFVGLLSA 448

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           C+H  +L+LGR    H+F S                          + +  MP   +  +
Sbjct: 449 CSHSGMLDLGR----HIFRS------------------------MTRDYKLMP--KLEHY 478

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
             MI     +G  KEA  + N M    + PD      +L AC   G+++LG 
Sbjct: 479 GCMIDLXGHSGLFKEAEKMINTME---MEPDGVIWCSLLKACKMHGNVELGE 527


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/619 (40%), Positives = 367/619 (59%), Gaps = 48/619 (7%)

Query: 6   PHSPAYEAILKAGPR---LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           PH  +Y  I +   R   +K  QQ HA +++ G   +  +  K++++   +G +  A  +
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 63  FFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           F  I +P S L+N++I    R+         L  Y RM    +   N+T   V+KSCA L
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD-------------- 165
           S + +GR VH      G + D +V A+L++ Y K   +  ARK+FD              
Sbjct: 195 SRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALI 254

Query: 166 -----------------RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG--VNPD 206
                            RM  +++V+W +MISGY QNGFA++A+GLF+ M   G  + P+
Sbjct: 255 AGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPN 314

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T V VL ACAQ   ++ GR +H+F  G GL +N  + T+L  MYA+C ++ +AR  FD
Sbjct: 315 WVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFD 374

Query: 267 MMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           M+++   N+IAW  MI+ Y  HG G EAV +F  M   GV+P+ VTF+ +LS C+H+GL+
Sbjct: 375 MIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLI 434

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP---APAVWT 381
             G   F  M   + + P VEH+ C+VDL GRAG L EA    K++I + P    P+VW 
Sbjct: 435 DAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEA----KELISQMPMQAGPSVWG 490

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
           A+L AC+ H+N ++    A  L  +EP+N G+YV+LSN+YA AG  + V+ +R ++  +G
Sbjct: 491 ALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQG 550

Query: 442 LKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE 501
           +KK  G S +E++ K++LF   DKSHP   EIY++L+ L  + + AGY+P++   +H++ 
Sbjct: 551 MKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDIS 610

Query: 502 EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
           EEE+EY+L  HSEKLA+AFGL+ T PG+ +R+ KNLR+C DCH+A KFIS    REIIVR
Sbjct: 611 EEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVR 670

Query: 562 DRLRFHHFKRGSCSCLDYW 580
           D  RFH FK GSCSC DYW
Sbjct: 671 DLNRFHCFKDGSCSCGDYW 689


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/581 (41%), Positives = 364/581 (62%), Gaps = 6/581 (1%)

Query: 4   KQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           ++P S    ++L A    + L   ++VHA  + AG     ++ T +L   C  G +  A+
Sbjct: 115 ERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAAR 174

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
            +F C+P  +S  +N +I   +    +T+++  + RM+   +  ++ +  A +++C  L 
Sbjct: 175 AVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELG 234

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV-VAWNSMI 179
            L+  R VH  +   G  S++ V  AL+  YAK    D+A +VF+ + +K   ++WN+MI
Sbjct: 235 YLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMI 294

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
            G+ QN   ++A  LF  M+   V PDS T V V+ A A + D    RW+H + +   LD
Sbjct: 295 LGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLD 354

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            +V + T+LI+MY++CG VS AR +FD   + +VI W AMI GYG HG+G  AVELF  M
Sbjct: 355 QDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEM 414

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
           +  G  PN  TF++VL+AC+HAGLV EG + FASM+++YGL PG+EH+  MVDL GRAG 
Sbjct: 415 KGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGK 474

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L+EA+ F+K++  E P  +V+ AMLGACK+HKN +L  E A+ +  + PE   ++V+L+N
Sbjct: 475 LDEAWSFIKNMPIE-PGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLAN 533

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           IYA A     V  VR  M +KGL+K  G+S +++  + + F  G  +H +  +IY  L +
Sbjct: 534 IYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAK 593

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           L+   ++ GYVP+++S +H++E++ +   L  HSEKLA+A+GL+RT+PG TI+I KNLR+
Sbjct: 594 LIEEIKDMGYVPDTDS-IHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRV 652

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCH+A K IS+ T REII+RD  RFHHFK G CSC DYW
Sbjct: 653 CNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 166/333 (49%), Gaps = 11/333 (3%)

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   TF+A++K CA  + L  GRAVH  +   G  S+     AL N Y K      AR+V
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR--DFGVNPDSTTCVCVLAACAQLG 221
           FDRMP +  VAWN++++GY +NG    A+     M+  + G  PDS T V VL ACA   
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            +   R VH F +  GLD  V ++T++++ Y +CG V  AR +FD M   N ++W AMI 
Sbjct: 134 ALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMID 193

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           GY  +G  TEA+ LF RM   GV   + + +A L AC   G + E  RV   +    GL 
Sbjct: 194 GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVH-ELLVRVGLS 252

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
             V     ++  + +    + A +   + +G K     W AM+     ++      E AE
Sbjct: 253 SNVSVTNALITTYAKCKRADLAAQVFNE-LGNKKTRISWNAMILGFTQNE----CPEDAE 307

Query: 402 HL---LSVEPENPGHYVMLSNIYALAGRMDRVE 431
            L   + +E   P  + ++S I A+A   D ++
Sbjct: 308 RLFARMQLENVRPDSFTLVSVIPAVADISDPLQ 340



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 123/250 (49%), Gaps = 10/250 (4%)

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P   T   +L  CA   D+  GR VH  +  +GL    + +T+L NMY +C   + AR +
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH--GVRPNNVTFVAVLSACAHAG 322
           FD M   + +AW A+++GY  +G  + A+E   RM+    G RP++VT V+VL ACA A 
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 323 LVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
            +     V A ++R   GL   V     ++D + + G + EA + V D +  + + + W 
Sbjct: 134 ALHACREVHAFALRA--GLDELVNVSTAVLDAYCKCGAV-EAARAVFDCMPVRNSVS-WN 189

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVEVVRNIMIQ 439
           AM+     + N    + +   ++  E  +     +L+ + A    G +D V  V  ++++
Sbjct: 190 AMIDGYADNGNATEAMALFWRMVQ-EGVDVTDASVLAALQACGELGYLDEVRRVHELLVR 248

Query: 440 KGLKKHVGYS 449
            GL  +V  +
Sbjct: 249 VGLSSNVSVT 258


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/582 (39%), Positives = 358/582 (61%), Gaps = 5/582 (0%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           + ++P S     +L A   +  L   + +H + I AG+ +  ++ T L  +    G +  
Sbjct: 242 EGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVET 301

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+ IF  +       +N+++    +      ++  + +M+   I P+  T    + +CA 
Sbjct: 302 ARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACAD 361

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L  L  G+ VH  V      SD+ V  +L++ Y+K   VD+A  +F+ +  ++ V+WN+M
Sbjct: 362 LGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAM 421

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           I GY QNG   EA+  F+ M+  G+ PDS T V V+ A A+L      +W+H  I+   L
Sbjct: 422 ILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCL 481

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           D N+ + T+L++MY++CG +  AR++FDM+S+ +VI W AMI GYG HG G  A++LF +
Sbjct: 482 DKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDK 541

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M+   V PN++T+++V+SAC+H+GLV EG R F SM+Q+YGL P ++H+  MVDL GRAG
Sbjct: 542 MKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAG 601

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
            + EA+ F+++ +   P   V+ A  GACK+HKN ++G + A+ L  + P+  G++V+L+
Sbjct: 602 RIKEAWDFIEN-MPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLA 660

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           NIYA   +  +V  VR  M +KGLKK  G S VE+  + + F  G  +HP +  IY +L+
Sbjct: 661 NIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLE 720

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           EL+   + AGYVP++   + ++E++ +E  L  HSEKLA+AFGL+ TSPG TI + KNLR
Sbjct: 721 ELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLR 779

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+A K+IS+ T REIIVRD  RFHHFK G CSC DYW
Sbjct: 780 VCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 226/443 (51%), Gaps = 6/443 (1%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           +L+    +K L Q+   +I  G        TKL+SL    G I  A R+F  I      L
Sbjct: 55  LLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDAL 114

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           ++T++   +K +    +L F  RM   ++ P  Y F+ ++K C   + L  G+ +H  + 
Sbjct: 115 YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI 174

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            + + +++     +VN YAK   +D A K+FDRMP++ +V+WN++I+G+ QNGFAK+A+ 
Sbjct: 175 TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALE 234

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           L   M+D G  PDS T V VL A A +G + +G+ +H + +  G    V ++T+L +MY+
Sbjct: 235 LVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYS 294

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +CG+V  AR IFD M +  V++W +M+ GY  +G   +A+ +F +M   G+ P  VT + 
Sbjct: 295 KCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIME 354

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
            L ACA  G ++ G  V   + Q   L   +     ++ ++ +   ++ A     ++ G 
Sbjct: 355 ALHACADLGDLERGKFVHKFVDQ-LNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGR 413

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVE 431
                 W AM+     +      +     + S+  + P  + M+S I ALA        +
Sbjct: 414 THVS--WNAMILGYAQNGRVSEALNCFSEMKSLGMK-PDSFTMVSVIPALAELSVTRHAK 470

Query: 432 VVRNIMIQKGLKKHVGYSTVEVD 454
            +  ++I+  L K++  +T  VD
Sbjct: 471 WIHGLIIRSCLDKNIFVTTALVD 493


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/547 (43%), Positives = 339/547 (61%), Gaps = 5/547 (0%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           R     T L++     G +  A+R+F  IP+ D   +N +I    ++    ++L  + RM
Sbjct: 191 RDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRM 250

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
             +++SP+  T  +V+ +C HL  L LG+ +   V   G+  +L +  ALV+ Y+K   +
Sbjct: 251 QEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEI 310

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
             ARK+FD M DK V+ WN+MI GY      +EA+ LF +M    V P+  T + VL AC
Sbjct: 311 GTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPAC 370

Query: 218 AQLGDIDLGRWVHEFI----VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           A LG +DLG+WVH +I     G G   NV L TS+I MYA+CG V  A ++F  M   ++
Sbjct: 371 ASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSL 430

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
            +W AMISG  M+G+   A+ LF  M   G +P+++TFV VLSAC  AG V+ GHR F+S
Sbjct: 431 ASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSS 490

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
           M ++YG+ P ++H+ CM+DL  R+G  +EA K +   +  +P  A+W ++L AC++H   
Sbjct: 491 MNKDYGISPKLQHYGCMIDLLARSGKFDEA-KVLMGNMEMEPDGAIWGSLLNACRIHGQV 549

Query: 394 DLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEV 453
           + G  VAE L  +EPEN G YV+LSNIYA AGR D V  +R  +  KG+KK  G +++E+
Sbjct: 550 EFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEI 609

Query: 454 DQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHS 513
           D   + F +GDK HP +  I++ LDE+     E G+VP++   +++++EE +E +L  HS
Sbjct: 610 DGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALTQHS 669

Query: 514 EKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGS 573
           EKLA+AFGL+ T PG TIRIVKNLR+C +CHSA K IS   NREII RDR RFHHFK G 
Sbjct: 670 EKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGF 729

Query: 574 CSCLDYW 580
           CSC D W
Sbjct: 730 CSCNDRW 736



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 221/430 (51%), Gaps = 40/430 (9%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCI--PSP 69
           +L   P +  L+Q+H+ +I +G   +    +KL+    +  +  ++YA  +F  I    P
Sbjct: 31  LLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPP 90

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           + F++NTLI  +S     T SL  + +M+ S + P+++TF ++ KSCA     +  + +H
Sbjct: 91  NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLH 150

Query: 130 CHVFVSGYDSDLHVQAALVNFYAK-------------------------------SNNVD 158
            H          HV  +L++ Y++                                 +VD
Sbjct: 151 AHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVD 210

Query: 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
            AR++FD +P K VV+WN+MI+GY Q+G  +EA+  F  M++  V+P+ +T V VL+AC 
Sbjct: 211 DARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACG 270

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
            L  ++LG+W+  ++  +G   N+ L  +L++MY++CG +  AR++FD M + +VI W  
Sbjct: 271 HLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNT 330

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           MI GY       EA+ LF  M    V PN+VTF+AVL ACA  G +  G  V A + +  
Sbjct: 331 MIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNL 390

Query: 339 ---GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
              G +  V     ++ ++ + G +  A +  +  +G + + A W AM+    M+ + + 
Sbjct: 391 KGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRS-MGSR-SLASWNAMISGLAMNGHAER 448

Query: 396 GVEVAEHLLS 405
            + + E +++
Sbjct: 449 ALGLFEEMIN 458



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 143/259 (55%), Gaps = 6/259 (2%)

Query: 35  GYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFY 94
           G+G++  ++  L+ +    G I  A+++F  +   D  L+NT+I      +   ++L+ +
Sbjct: 289 GFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLF 348

Query: 95  RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV----SGYDSDLHVQAALVNF 150
             M+  N++P++ TF AV+ +CA L  L+LG+ VH ++      +G  +++ +  +++  
Sbjct: 349 EVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVM 408

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
           YAK   V+VA +VF  M  +S+ +WN+MISG   NG A+ A+GLF  M + G  PD  T 
Sbjct: 409 YAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITF 468

Query: 211 VCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF-DMM 268
           V VL+AC Q G ++LG R+        G+   +     +I++ AR G   +A+ +  +M 
Sbjct: 469 VGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNME 528

Query: 269 SELNVIAWTAMISGYGMHG 287
            E +   W ++++   +HG
Sbjct: 529 MEPDGAIWGSLLNACRIHG 547


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/578 (41%), Positives = 356/578 (61%), Gaps = 5/578 (0%)

Query: 6   PHSPAYEAILK---AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    Y ++L+   A   +KP +Q+HA + +AG+G    + TKL++L C    ++ A+ +
Sbjct: 73  PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  IP  + FL+N LI   +       ++  Y +M    + P N+TF  V+K+CA LS +
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAI 192

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             GR +H HV  +G++ D+ V AAL++ YAK   V  AR+VFD++  +  V WNSM++ Y
Sbjct: 193 EHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAY 252

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            QNG     + L + M   G+ P   T V  ++A A    +  GR +H     Q  + + 
Sbjct: 253 SQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHD 312

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            + T+L++MYA+CG+V  AR +F+ +    V++W AMI+GY MHG+ TEA++LF  M   
Sbjct: 313 KVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMN-R 371

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
             +P+++TFV VLSAC+H GL++EG   F +M ++Y + P V+H+ CMVDL G +G L+E
Sbjct: 372 VAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDE 431

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           AY  +   +   P   VW A+L +CK+H N +LG    E L+ +EP++ G+YV+LSNIYA
Sbjct: 432 AYNLIMQ-MKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYA 490

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            AG+ + V  +R +M  + LKK +  S +EV  K + F  GD SHP ++EIY  L+ + G
Sbjct: 491 QAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGG 550

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             +EAGY P + S  H++E++E+   +  HSE+LA+AFGL+ T PG  + I KNLR+C D
Sbjct: 551 LMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICED 610

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH AIKFIS  T REI VRD  R+HHFK G CSC DYW
Sbjct: 611 CHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 167/327 (51%), Gaps = 17/327 (5%)

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           ++P+   ++++++SC     +  G+ +H  V ++G+  D  +   LVN Y   +++  AR
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
            +FDR+P  ++  WN +I GY  NG  + A+ L+  M D+G+ PD+ T   VL ACA L 
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALS 190

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            I+ GR +HE +V  G + +V +  +LI+MYA+CG V  ARE+FD +   + + W +M++
Sbjct: 191 AIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLA 250

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGL 340
            Y  +G+    + L   M   G+RP   T V  +SA A    + +G  +   S RQE+  
Sbjct: 251 AYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFES 310

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
              V+    +VD++ + G +  A        VK V+        W AM+    MH +   
Sbjct: 311 HDKVK--TALVDMYAKCGSVRVARNLFERLGVKRVVS-------WNAMITGYAMHGHATE 361

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYA 422
            +++ E +  V    P H   +  + A
Sbjct: 362 ALDLFEEMNRV--AKPDHITFVGVLSA 386


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/611 (39%), Positives = 357/611 (58%), Gaps = 37/611 (6%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCD---------- 52
           P+S  +  +LK+  + K     QQ+H H++  GY     + T L+S+             
Sbjct: 64  PNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKV 123

Query: 53  ---------------------AGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSL 91
                                +G I  AQ +F  IP  D   +N +I   ++     ++L
Sbjct: 124 FDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEAL 183

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
             ++ M+ +N+ P   T   V+ +CA    + LGR VH  +   G+ S+L +  AL++ Y
Sbjct: 184 ELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLY 243

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
           +K   V+ A  +F+ +  K VV+WN++I GY      KEA+ LF  M   G +P+  T V
Sbjct: 244 SKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIV 303

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV--LATSLINMYARCGNVSKAREIFDMMS 269
            +L ACA LG ID+GRW+H +I  +  DV     L TSLI+MYA+CG++  A ++F+ M 
Sbjct: 304 SILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSML 363

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             ++ +W AMI G+ MHG      +LF RMR +G+ P+++TFV +LSAC+H+G +  G  
Sbjct: 364 HKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRH 423

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
           +F SM Q+Y + P +EH+ CM+DL G +GL  EA + +K +  E P   +W ++L AC+ 
Sbjct: 424 IFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPME-PDGVIWCSLLKACRR 482

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           H N +L    A +L+ VEPENPG YV+LSNIYA AG  D V  VR ++  KG+KK  G S
Sbjct: 483 HGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCS 542

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
           ++E+D + + F +GDK HP   EIY  L+E+     EAG+VP++   + E+EEE +E +L
Sbjct: 543 SIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWKEGAL 602

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
           R+HSEKLA+AFGL+ T PG  + IVKNLR+C +CH A K +S    REII RDR RFHHF
Sbjct: 603 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHF 662

Query: 570 KRGSCSCLDYW 580
           + G CSC D+W
Sbjct: 663 RDGVCSCNDFW 673



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 207/405 (51%), Gaps = 37/405 (9%)

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           YA  +F  I  P+  ++NT++   + ++    +L  Y  MI   + P++YTF  ++KSCA
Sbjct: 18  YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCA 77

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR----------- 166
                  G+ +H HV   GY+ DL+V  +L++ YA++  ++ A KVFDR           
Sbjct: 78  KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137

Query: 167 --------------------MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
                               +P K VV+WN+MISGY + G  KEA+ LF  M    V PD
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T V VL+ACAQ   ++LGR VH +I   G   N+ +  +LI++Y++CG V  A  +F+
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            +S  +V++W  +I GY       EA+ LF  M   G  PN+VT V++L ACAH G +  
Sbjct: 258 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDI 317

Query: 327 GHRVFASMRQEYGLLPGVEH-HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           G  +   + ++   +         ++D++ + G +  A++    ++ +  + + W AM+ 
Sbjct: 318 GRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHK--SLSSWNAMIF 375

Query: 386 ACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLSNIYALAGRMD 428
              MH   + G ++   +    +EP++   +V L +  + +G++D
Sbjct: 376 GFAMHGRANAGFDLFSRMRKNGIEPDDIT-FVGLLSACSHSGKLD 419



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 167/329 (50%), Gaps = 16/329 (4%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           N +P       +L A  + + ++   QVH+ +   G+G +  ++  L+ L    G +  A
Sbjct: 193 NVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETA 252

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
             +F  +   D   +NTLI   +  N   ++LL ++ M+ S  SP++ T  +++ +CAHL
Sbjct: 253 CGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHL 312

Query: 120 SILNLGRAVHCHVFVSGYDSDL----HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
             +++GR +  HV++     D+     ++ +L++ YAK  +++ A +VF+ M  KS+ +W
Sbjct: 313 GAIDIGRWI--HVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSW 370

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           N+MI G+  +G A     LF+ MR  G+ PD  T V +L+AC+  G +DLGR + + +  
Sbjct: 371 NAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMT- 429

Query: 236 QGLDVNVVLA--TSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEA 292
           Q  D+   L     +I++    G   +A+E+   M  E + + W +++     HG   E 
Sbjct: 430 QDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHG-NLEL 488

Query: 293 VELFHR--MRAHGVRPNNVTFVAVLSACA 319
            E F R  M+     P +   ++ + A A
Sbjct: 489 AESFARNLMKVEPENPGSYVLLSNIYATA 517


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/580 (38%), Positives = 361/580 (62%), Gaps = 1/580 (0%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           ++   P    + ++ K+   L   +Q+H H    G+     +   L+++  + G +  A+
Sbjct: 133 LQGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSAR 192

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           ++F  + +     + T+I   ++ +   +++  +RRM ++++ P+  T   V+ +CA   
Sbjct: 193 KVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSR 252

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L   + VH ++  +G      + +AL++ Y K     +AR +F++MP+K++  WN MI+
Sbjct: 253 DLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMIN 312

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           G+ ++   +EA+ LFN M+  GV  D  T   +L AC  LG ++LG+W+H +I  + ++V
Sbjct: 313 GHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEV 372

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +V L T+L++MYA+CG++  A  +F  M E +V+ WTA+I G  M G G +A+ELFH M+
Sbjct: 373 DVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQ 432

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
              V+P+ +TFV VL+AC+HAGLV EG   F SM  +YG+ P +EH+ CMVD+ GRAG +
Sbjct: 433 MSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRI 492

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
            EA   +++ +   P   V   +L AC++H N  +    A+ L+ ++P+N G YV+LSNI
Sbjct: 493 AEAEDLIQN-MPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNI 551

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           Y+     +  + +R +M+++ +KK  G S +EV    + F  GD SHP ++EIY+ LD++
Sbjct: 552 YSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDM 611

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
           M R + AGYVP+    + +++E+E+E  L  HSEKLA+AFGL+ T+PG  IR+VKNLR+C
Sbjct: 612 MRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVC 671

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCHSA+KFIS   NREIIVRDR RFHHF +GSCSC D+W
Sbjct: 672 SDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 200/365 (54%), Gaps = 12/365 (3%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           L+Q+HA ++           +K+++     D+G + YA+ +F  IP+P +F  N++I   
Sbjct: 56  LKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGY 115

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           +  N    ++LFY+ M++  + P  +TF ++ KSC    +L  G+ +HCH    G+ SD 
Sbjct: 116 TNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCG---VLCEGKQLHCHSTKLGFASDA 172

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
           ++Q  L+N Y+    +  ARKVFD+M +KSVV+W +MI  Y Q     EAI LF  M   
Sbjct: 173 YIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIA 232

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
            V P+  T V VL ACA+  D++  + VH++I   G+  + VL ++L+++Y +CG    A
Sbjct: 233 SVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLA 292

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           R++F+ M E N+  W  MI+G+       EA+ LF+ M+  GV+ + VT  ++L AC H 
Sbjct: 293 RDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHL 352

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV-- 379
           G ++ G  +   + +E  +   V     +VD++ + G +  A +    V  E P   V  
Sbjct: 353 GALELGKWLHVYIEKE-KIEVDVALGTALVDMYAKCGSIESAMR----VFQEMPEKDVMT 407

Query: 380 WTAML 384
           WTA++
Sbjct: 408 WTALI 412


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/601 (38%), Positives = 365/601 (60%), Gaps = 35/601 (5%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDA--GFITYAQRIFFCIPSPDS 71
           +L+     + L+ +HAH++           ++L++   D+    + YA R+   I +P+ 
Sbjct: 23  LLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNL 82

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           F++N LI   S +    +S  +Y + +   + P N T   ++K+CA L    +G   H  
Sbjct: 83  FIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQ 142

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF--------------------------- 164
               G++ D +VQ +LV+ YA   +++ AR VF                           
Sbjct: 143 AIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSA 202

Query: 165 ----DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
               DRMP++++V W++MISGY +N   ++A+  F  ++  GV  + T  V V+++CA L
Sbjct: 203 RELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHL 262

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
           G + +G   HE+++   L +N++L T++++MYARCGNV KA  +F+ + E +V+ WTA+I
Sbjct: 263 GALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALI 322

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +G  MHGY  +A+  F  M   G  P ++TF AVL+AC+HAG+V+ G  +F SM++++G+
Sbjct: 323 AGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGV 382

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P +EH+ CMVDL GRAG L +A KFV   +  KP   +W A+LGAC++HKN ++G  V 
Sbjct: 383 EPRLEHYGCMVDLLGRAGKLRKAEKFVLK-MPVKPNAPIWRALLGACRIHKNVEVGERVG 441

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           + LL ++PE  GHYV+LSNIYA A +   V V+R +M  KG++K  GYS +E+D K + F
Sbjct: 442 KILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEF 501

Query: 461 SMGDKSHPNTNEIYQ-YLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALA 519
           ++GDK+HP   +I + + D ++ + + AGYV  +   M +++EEE+E +L  HSEKLA+A
Sbjct: 502 TIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIA 561

Query: 520 FGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           +G+M+      IRIVKNLR+C DCH+A K IS     E+IVRDR RFHHFK G+CSC+DY
Sbjct: 562 YGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDY 621

Query: 580 W 580
           W
Sbjct: 622 W 622


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/611 (38%), Positives = 366/611 (59%), Gaps = 37/611 (6%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVC------DA--- 53
           P+   +  +LK+  + K     QQ+H H++  GY     + T L+S+        DA   
Sbjct: 86  PNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKV 145

Query: 54  ----------------------GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSL 91
                                 G+I  AQ++F  IP  D   +N +I   ++   + ++L
Sbjct: 146 FDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEAL 205

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
             ++ M+ +N+ P   T  +V+ +CA  + + LGR VH  +   G+ S+L +  AL++ Y
Sbjct: 206 ELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLY 265

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
            K   V+ A  +F+ +  K V++WN++I GY      KEA+ LF  M   G +P+  T +
Sbjct: 266 IKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTML 325

Query: 212 CVLAACAQLGDIDLGRWVHEFIVG--QGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
            +L ACA LG I++GRW+H +I    +G+       TSLI+MYA+CG++  A+++FD + 
Sbjct: 326 SILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSIL 385

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             ++ +W AMI G+ MHG    A ++F RMR + + P+++TFV +LSAC+H+G++  G  
Sbjct: 386 NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRH 445

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
           +F SM+++Y + P +EH+ CM+DL G +GL  EA + + + +  +P   +W ++L ACKM
Sbjct: 446 IFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMI-NTMEMEPDGVIWCSLLKACKM 504

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           H N +LG   A++L+ +EP+NPG YV+LSNIYA AGR + V  +R ++  KG+KK  G S
Sbjct: 505 HGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCS 564

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
           ++E+D   + F +GDK HP   EIY  L+E+     EAG+VP++   + E+EEE +E +L
Sbjct: 565 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGAL 624

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
           R+HSEKLA+AFGL+ T PG  + IVKNLR+C +CH A K IS    REII RDR RFHHF
Sbjct: 625 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHF 684

Query: 570 KRGSCSCLDYW 580
           + G CSC DYW
Sbjct: 685 RDGVCSCNDYW 695



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/432 (30%), Positives = 215/432 (49%), Gaps = 39/432 (9%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSL-VCDAGF--ITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+ +HA +I  G   +   L+KL+   V    F  + YA  +F  I  P+  ++NT+   
Sbjct: 3   LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
           ++ ++    +L  Y  MI   + P+ YTF  ++KSCA       G+ +H HV   GYD D
Sbjct: 63  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDR-------------------------------MPD 169
           L+V  +L++ Y ++  ++ ARKVFD+                               +P 
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           K VV+WN+MISGY + G  KEA+ LF  M    V PD +T V V++ACAQ   I+LGR V
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 242

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           H +I   G   N+ +  +LI++Y +CG V  A  +F+ +S  +VI+W  +I GY      
Sbjct: 243 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 302

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY-GLLPGVEHHV 348
            EA+ LF  M   G  PN+VT +++L ACAH G ++ G  +   + +   G+     H  
Sbjct: 303 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRT 362

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SV 406
            ++D++ + G +  A +    ++    + + W AM+    MH   +   ++   +    +
Sbjct: 363 SLIDMYAKCGDIEAAQQVFDSILNR--SLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 420

Query: 407 EPENPGHYVMLS 418
           EP++     +LS
Sbjct: 421 EPDDITFVGLLS 432


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/554 (41%), Positives = 340/554 (61%), Gaps = 1/554 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           V A+ +  G    R +L+ L+ +    G +  A+ +F         ++N ++    K   
Sbjct: 142 VQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGD 201

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             + +  ++ M+   ++    T  +V+ +C  +    LG+ V  HV   G   +  +  A
Sbjct: 202 WMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTA 261

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ YAK   +  AR++FD M  + VVAW++MISGY Q    +EA+GLF+ M+   V P+
Sbjct: 262 LMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPN 321

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T V VL+ACA LG ++ G+WVH ++  + L +  +L T+L++ YA+CG +  A E F+
Sbjct: 322 DVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFE 381

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M   N   WTA+I G   +G G EA+ELF  MR  G+ P +VTF+ VL AC+H+ LV+E
Sbjct: 382 SMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEE 441

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G R F SM ++YG+ P VEH+ CMVDL GRAGL++EAY+F++ +  E P   +W A+L +
Sbjct: 442 GRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIE-PNAVIWRALLSS 500

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C +H+N  +G E  + ++S+ P + G YV+LSNIYA AG+     +VR  M  +G++K  
Sbjct: 501 CAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTP 560

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
           G S +E+D   + F   D  HP   EIYQ ++E++GR + AGYVP +     E+EE E+E
Sbjct: 561 GCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKE 620

Query: 507 YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
            S+ +HSEKLA+AFGLM+  PG TIR+ KNLR+C DCHSA K IS   +REI+VRDR  F
Sbjct: 621 VSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIF 680

Query: 567 HHFKRGSCSCLDYW 580
           HHFK G+CSC DYW
Sbjct: 681 HHFKDGTCSCNDYW 694



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/382 (33%), Positives = 204/382 (53%), Gaps = 15/382 (3%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAG--YGRSRSMLTKLLSLVCDAGFITYAQRIF 63
           P  P   A L+A P   P  Q+HA LI +G   G ++S  + L +       + YA  +F
Sbjct: 18  PAPP--RAPLRADPSYLP--QLHAALIKSGELTGSAKSFHSLLEAAAASPTLLPYAVSLF 73

Query: 64  FCIPSP--DSFLFNTLIIRNSKANFSTDSL-LFYRRMIVSNISPSN-YTFSAVIKSCAHL 119
              P P   +  +N L+     A    D+L LF   +  ++  P++ +T +  +KSC+ +
Sbjct: 74  RLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRM 133

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             L++GR V  +    G  +D  V ++L++ YA   +V  AR VFD   +  VV WN+++
Sbjct: 134 CALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIV 193

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           + Y +NG   E + +F  M + GV  D  T V V+ AC ++GD  LG+WV   +  +GL 
Sbjct: 194 AAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLA 253

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            N  L T+L++MYA+CG + KAR +FD M   +V+AW+AMISGY       EA+ LF  M
Sbjct: 254 RNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEM 313

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
           +   V PN+VT V+VLSACA  G ++ G  V + +R++   L  +     +VD + + G 
Sbjct: 314 QLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTI-LGTALVDFYAKCGC 372

Query: 360 LNEAYKFVKDVIGEKPAPAVWT 381
           +++A +  + +    P    WT
Sbjct: 373 IDDAVEAFESM----PVKNSWT 390


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/566 (41%), Positives = 349/566 (61%), Gaps = 15/566 (2%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSM---LTKLLSLVCDAGFITYAQ--RIFFCIPSPDSFLFN 75
           L  L+Q HA ++  G+ +   +   L K  + V    ++++    R+F  +  P+ FL+N
Sbjct: 68  LHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWN 127

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
            +I    + N    ++L Y  M+V++  P+ YT+ AV+K+C+   ++  G  VH H+   
Sbjct: 128 CMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKH 187

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G   D H+ ++ +  YA    +  AR++ D   DK        +   ++ G   EA+ +F
Sbjct: 188 GLGGDGHILSSAIRMYASFGRLVEARRILD---DKGGEV--DAVCMPDRKGCFMEALEIF 242

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
           + M+   + P       VL+ACA LG +D GRW+H +     + ++ VL TSL++MYA+C
Sbjct: 243 HQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC 302

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G +  A E+F+ MS   V +W AMI G  MHG   +A++LF +M    + PN +TFV VL
Sbjct: 303 GRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVL 359

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
           +ACAH GLVQ+G  +F SMR+EYG+ P +EH+ C+VDL GRAGLL EA K V  +  E P
Sbjct: 360 NACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE-P 418

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
            PAVW A+LGAC+ H N +LG  V + LL +EP+N G Y +LSNIYA AGR + V  VR 
Sbjct: 419 TPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRK 478

Query: 436 IMIQKGLKKHVGYSTVEVDQKN-YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
           +M ++G+K   G S +++ +   + F +GD SHP   +IYQ LD++  R +  GY P+  
Sbjct: 479 LMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPS 538

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
             + +++EEE+E ++  HSEKLA+ FGL+ TSPG TIRIVKNLR+C DCHSA K IS   
Sbjct: 539 QVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVY 598

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
           NREIIVRDR+R+HHF+ G+CSC D+W
Sbjct: 599 NREIIVRDRIRYHHFRNGACSCKDFW 624


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/579 (41%), Positives = 346/579 (59%), Gaps = 4/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP++  Y  ILKA   L  L+   +VHA +   G      + T LL +    G I  A+R
Sbjct: 126 QPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARR 185

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF  + + D   +  +I   +++    ++     +M      P+  T+ +++ +CA    
Sbjct: 186 IFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGA 245

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L   + VH H   +G + D+ V  ALV  YAKS ++D AR VFDRM  + VV+WN MI  
Sbjct: 246 LKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGA 305

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + ++G   EA  LF  M+  G  PD+   + +L ACA  G ++  + +H   +  GL+V+
Sbjct: 306 FAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVD 365

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V + T+L++MY++ G++  AR +FD M   NV++W AMISG   HG G +A+E+F RM A
Sbjct: 366 VRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTA 425

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
           HGV+P+ VTFVAVLSAC+HAGLV EG   + +M Q YG+ P V H  CMVDL GRAG L 
Sbjct: 426 HGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLM 485

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA  F+ D +   P  A W A+LG+C+ + N +LG  VA+  L ++P+N   YV+LSNIY
Sbjct: 486 EAKLFI-DNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIY 544

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AG+ D V  VR +M ++G++K  G S +EVD K + F + D SHP   EI +  D+++
Sbjct: 545 AEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVI 604

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            + +  GY+P++   +     +++E  +  HSEKLA+ +GLM T PG  IR+ KNLR+C 
Sbjct: 605 EKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCT 664

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH A K IS    REIIVRD  RFHHFK G CSC DYW
Sbjct: 665 DCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 215/413 (52%), Gaps = 8/413 (1%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y  +LK   + K L   +QVH  +I +   ++  ++  LL +  + G +  A+ +F  + 
Sbjct: 31  YVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALV 90

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
                 +N +I    +   + D++  +R M    + P+  T+  ++K+CA LS L  G+ 
Sbjct: 91  KKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKE 150

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           VH  +   G +SD+ V  AL+  Y K  +++ AR++FD + +  +++W  MI  Y Q+G 
Sbjct: 151 VHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGN 210

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            KEA  L   M   G  P++ T V +L ACA  G +   + VH   +  GL+++V + T+
Sbjct: 211 GKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTA 270

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L+ MYA+ G++  AR +FD M   +V++W  MI  +  HG G EA +LF +M+  G +P+
Sbjct: 271 LVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPD 330

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            + F+++L+ACA AG ++   ++      + GL   V     +V ++ ++G +++A + V
Sbjct: 331 AIMFLSILNACASAGALEWVKKIHRHA-LDSGLEVDVRVGTALVHMYSKSGSIDDA-RVV 388

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLS 418
            D +  +   + W AM+     H      +EV   + +  V+P+      +LS
Sbjct: 389 FDRMKVRNVVS-WNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLS 440



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 194/383 (50%), Gaps = 28/383 (7%)

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
           AN  +++++     +   +   ++ +  V+K C     L   + VH  +  S  + + HV
Sbjct: 6   ANTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHV 65

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
              L++ Y +   +  AR VFD +  KS  +WN+MI+GY ++  A++A+ LF  M   GV
Sbjct: 66  MNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGV 125

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            P++ T + +L ACA L  +  G+ VH  I   GL+ +V + T+L+ MY +CG++++AR 
Sbjct: 126 QPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARR 185

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           IFD +   ++I+WT MI  Y   G G EA  L  +M   G +PN +T+V++L+ACA  G 
Sbjct: 186 IFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGA 245

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKF-----VKDVIGEK 374
           ++   RV       + L  G+E  V     +V ++ ++G +++A        V+DV+   
Sbjct: 246 LKWVKRV-----HRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVS-- 298

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE--NPGHYVMLS--NIYALAGRMDRV 430
                W  M+GA   H     G E  +  L ++ E   P   + LS  N  A AG ++ V
Sbjct: 299 -----WNVMIGAFAEHGR---GHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWV 350

Query: 431 EVVRNIMIQKGLKKHVGYSTVEV 453
           + +    +  GL+  V   T  V
Sbjct: 351 KKIHRHALDSGLEVDVRVGTALV 373


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/558 (41%), Positives = 355/558 (63%), Gaps = 3/558 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           Q+VHAH+I   Y     + T+L+ L      +  A+R+   +P  +   +  +I   S+ 
Sbjct: 30  QRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQR 89

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            +++++L  +  M++S  +P+ +TF+ V+ SC   S   LGR +H  V  + ++S + V 
Sbjct: 90  GYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVG 149

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ++L++ YAK+  +  AR+VFD +P++ VV+  ++ISGY Q G  +EA+ LF  ++  G+ 
Sbjct: 150 SSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMR 209

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +  T   VL A + L  +D GR VH  ++   L   VVL  SLI+MY++CG+++ +R I
Sbjct: 210 SNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRI 269

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGL 323
           FD M E  VI+W AM+ GY  HG G EAVELF  M+    V+P++VTF+AVLS C+H G+
Sbjct: 270 FDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGM 329

Query: 324 VQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
              G  +F  M  Q+ G  P +EH+ C+VDLFGRAG + EA++F+K +  E P  A+W +
Sbjct: 330 EDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFE-PTAAIWGS 388

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LGAC++H+N  +G  VA  LL +E EN G+YV+LSN+YA AGR D V  VR +M +K +
Sbjct: 389 LLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAV 448

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
            K  G S +E+DQ  + F   D+SHP   E++  + EL  + +EAGYVPE    ++++++
Sbjct: 449 IKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDD 508

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           E++E  L+ HSEKLALAFGL+ T  G  +RI+KNLR+CVDCH+  KF+S    RE+ +RD
Sbjct: 509 EQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRD 568

Query: 563 RLRFHHFKRGSCSCLDYW 580
           + RFHH   G+CSC DYW
Sbjct: 569 KNRFHHIVGGTCSCGDYW 586



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 180/359 (50%), Gaps = 42/359 (11%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           + +V+  C   + +  G+ VH H+  + Y+  ++++  L+  Y K   +  AR+V D MP
Sbjct: 13  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 72

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           +++VV+W +MISGY Q G+A EA+ LF  M   G  P+  T   VL +C       LGR 
Sbjct: 73  ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 132

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H  ++    + ++ + +SL++MYA+ G + +AR +FD + E +V++ TA+ISGY   G 
Sbjct: 133 IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 192

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHH 347
             EA++LF R++  G+R N VT+ +VL+A +    +  G +V + + +    LP  V   
Sbjct: 193 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR--AKLPFYVVLQ 250

Query: 348 VCMVDLFGRAGLLN----------------------------------EAYKFVKDVIGE 373
             ++D++ + G L                                   E +K +K+    
Sbjct: 251 NSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV 310

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS----VEPENPGHYVMLSNIYALAGRMD 428
           KP    + A+L  C      D G+E+   +++     EPE   HY  + +++  AGR++
Sbjct: 311 KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIE-HYGCVVDLFGRAGRVE 368


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/511 (44%), Positives = 329/511 (64%), Gaps = 1/511 (0%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           DS L N++I   + +N    S+  Y +M  + I P + TF  V+KS A L    LG+A+H
Sbjct: 106 DSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIH 165

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
           C +   G++S+++V  ALVN Y   ++V  AR+VFD +PD+++V+WN++I+GY  N   +
Sbjct: 166 CCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFR 225

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           + I +F  M+  G  P   T V VL ACA LG ++ GRW+ ++I    L +NV + T+LI
Sbjct: 226 KVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALI 285

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           +MYA+CG V +A +IF  M   NV  W  +ISGY M+G G  A++ F RM     +P+ V
Sbjct: 286 DMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEV 345

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           TF+ VL AC H GLV EG   F SM++E+GL P +EH+ CMVDL GRAG L+EA + ++ 
Sbjct: 346 TFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQ- 404

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
            +  +P P +W  +LGAC++H N  LG    + LL +EP N  +YV+L+N+YA   R D+
Sbjct: 405 AMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDK 464

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
           V  VR +M  + ++K  G S++E+D   Y F + +   P   E+Y+ L ++  + + AGY
Sbjct: 465 VGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGY 524

Query: 490 VPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKF 549
           V ++  A +++EEEE+E+SL YHSEKLALAFGL+++  G+T+RIVKNLR+C DCH   K 
Sbjct: 525 VADTGMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKI 584

Query: 550 ISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +S    R+I VRDR RFHHF  G+CSC DYW
Sbjct: 585 VSKVYRRDISVRDRNRFHHFVGGACSCKDYW 615


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/561 (42%), Positives = 352/561 (62%), Gaps = 10/561 (1%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDA---GFITYAQRIFFCIPSPDSFLFNTLIIR 80
           + ++HA L+  G+      L +LL L C A     ++YA+ IF  I  PD+F FNT IIR
Sbjct: 4   IYKLHARLLKTGHHNHPLALRRLL-LSCAASAPASLSYARSIFDLIAFPDTFAFNT-IIR 61

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
               +  + SL  + +M ++ +SP ++TF  V+K+CA L     G  +H  +F  G+DSD
Sbjct: 62  AHADSSPSFSLSLFSKMAMAGVSPDHFTFPFVLKACARLQT---GLDLHSLLFKLGFDSD 118

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           ++VQ  L++FY     +D A KVF+ MP++ +V+W+SMI+ + +NGF  EA+ LF  M+ 
Sbjct: 119 VYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQL 178

Query: 201 FG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
            G V PD    + V++A + LGD++LG+W+  FI   GL+  V L T+L++M++RCG + 
Sbjct: 179 VGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIE 238

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           ++  +FD M E NV+ WTA+I+G  +HG   EA+ +F+ MR HG +P++VTF  VL AC+
Sbjct: 239 ESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACS 298

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H GLV EG  VF S+R EYG+ P  EH+ CMVDL GRAGLLNEA KFV D +  +P   +
Sbjct: 299 HGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFV-DGMPIRPNSII 357

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W  +LGAC  H   +L  +V E +  ++  + G YV+LSN+Y   GR      VRN M +
Sbjct: 358 WRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMRE 417

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           K + K  G S + V+   + F  GD +HP    I ++L  ++   +  GY P+  + + +
Sbjct: 418 KRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFD 477

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           +EEEE+E +L YHSEKLA+AF L+      TIR++KNLR+C DCH  +K+ S    REII
Sbjct: 478 IEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREII 537

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           +RDR RFHHF +GSCSC DYW
Sbjct: 538 IRDRNRFHHFSKGSCSCRDYW 558



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 142/291 (48%), Gaps = 3/291 (1%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           M    P    +  +LKA  RL+    +H+ L   G+     +   L+      GF+ +A 
Sbjct: 80  MAGVSPDHFTFPFVLKACARLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFAL 139

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM-IVSNISPSNYTFSAVIKSCAHL 119
           ++F  +P  D   ++++I   +K  F  ++L  ++RM +V  + P      +V+ + + L
Sbjct: 140 KVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISIL 199

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             L LG+ +   +  +G +  + +  ALV+ +++   ++ + +VFD M +++V+ W ++I
Sbjct: 200 GDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALI 259

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GL 238
           +G   +G + EA+ +F  MR+ G  PD  T   VL AC+  G +  G  V E I  + G+
Sbjct: 260 NGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGM 319

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGY 288
           +        ++++  R G +++A +  D M    N I W  ++     H Y
Sbjct: 320 EPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNY 370


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/528 (44%), Positives = 339/528 (64%), Gaps = 8/528 (1%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+R F  IP+P+  +   +     + N    +L  +R M+ S  +      +A++   A 
Sbjct: 143 ARRAFDEIPTPNPVIVTAMASGCMRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSAS 202

Query: 119 LSILNLGRAVHCHVFVS--GYDSDLHVQAALVNFYAKSNNVDV--ARKVFDRMPDKSVVA 174
             + + G     H  VS  G D    V   +++ YAK    D+  ARK+FD M D+ VV+
Sbjct: 203 ARVPDRGITGGIHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMM-DRDVVS 261

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFG--VNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           WN+MI+ Y QNG + EA+GL++ M   G  V  ++ T   VL ACA  G I  G+ +H  
Sbjct: 262 WNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQ 321

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           +V  GL+ NV + TS+++MY++CG V  A + F  +   N+++W+AMI+GYGMHGYG EA
Sbjct: 322 VVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEA 381

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           + +F  MR  G++PN +TF+ VL+AC+HAGL+ EG   + +M+ E+G+ PGVEH+ CMVD
Sbjct: 382 LHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVD 441

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L GRAG L+EAY  +K+ +  KP  A+W A+L AC+++KN +L    AE L  ++  N G
Sbjct: 442 LLGRAGCLDEAYGLIKE-MKVKPDAALWGALLSACRIYKNVELAKICAERLFELDATNSG 500

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
           +YV+LSNIYA AG    VE +R ++  +G++K  GYS+VE+  K +LF +GDKSHP   E
Sbjct: 501 YYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKE 560

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           IY YL++L+ R  +AGYVP + S +H+L+ EERE  LR HSEKLA+AF LM +  G  I 
Sbjct: 561 IYAYLEKLLERIHDAGYVPNTGSVLHDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIH 620

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           ++KNLR+C DCH+AIK I+  T REII+RD  RFHHFK G CSC DYW
Sbjct: 621 VIKNLRVCTDCHAAIKIITKLTGREIIIRDLKRFHHFKDGLCSCGDYW 668


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/611 (38%), Positives = 357/611 (58%), Gaps = 37/611 (6%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   +  ++KA   LK  +    VH   I   +G    +L  L+      G ++ A+R+
Sbjct: 124 PNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERL 183

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  I   D   +N++I   ++ N   D+L  + +M   N+ P++ T   V+ +CA    L
Sbjct: 184 FKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDL 243

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD------------- 169
             GR V  ++   G   DL +  A+++ Y K  +VD A+K+FD MP+             
Sbjct: 244 EFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGY 303

Query: 170 ------------------KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV-NPDSTTC 210
                             K + AWN +IS YEQNG  KEA+ +FN ++   +  PD  T 
Sbjct: 304 AKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTL 363

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           V  L+ACAQLG IDLG W+H +I  +G+ +N  L +SL++MYA+CG++ KA E+F  + E
Sbjct: 364 VSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEE 423

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            +V  W+AMI+G GMHG G  A++LF  M+   V+PN+VTF  VL AC+HAGLV EG   
Sbjct: 424 RDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVF 483

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           F  M   YG++P ++H+ CMVD+ GRAG L EA + + + +   P+ +VW A+LGAC +H
Sbjct: 484 FHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINE-MSTTPSASVWGALLGACSLH 542

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
            N +LG   ++ LL +EP N G  V+LSNIYA  GR ++V  +R +M    LKK  G S+
Sbjct: 543 MNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSS 602

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE-REYSL 509
           +E +   + F +GD +HP ++ IY  L+E+  + +  GY P     +  +EE++ +E +L
Sbjct: 603 IEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQAL 662

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
             HSEKLA+AFGL+  +P   IR+VKNLR+C DCH+  K +S   +R+I++RDR RFHHF
Sbjct: 663 SLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHF 722

Query: 570 KRGSCSCLDYW 580
           + G CSC+DYW
Sbjct: 723 RDGHCSCMDYW 733



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 206/404 (50%), Gaps = 38/404 (9%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT--YAQRIFFCIPSPDSFLFNTLII 79
           K L++VHA ++  G        +KL +    + F T  YA+ +F  IP P+ + +NTLI 
Sbjct: 39  KQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIR 98

Query: 80  RNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
             + ++    S + +  ++      P+ +TF  VIK+ + L    +G AVH       + 
Sbjct: 99  AYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFG 158

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
            DL++  +LV FY    ++ +A ++F  +  K VV+WNSMIS + Q    ++A+ LF  M
Sbjct: 159 MDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKM 218

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
               V P+S T V VL+ACA+  D++ GRWV  +I  +G+ V++ L  ++++MY +CG+V
Sbjct: 219 ERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSV 278

Query: 259 SKAREIFDMMSELNVIAWTAMISGYG-------------------------------MHG 287
             A+++FD M E +V +WT M+ GY                                 +G
Sbjct: 279 DDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNG 338

Query: 288 YGTEAVELFHRMRAHGV-RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
              EA+ +F+ ++   + +P+ VT V+ LSACA  G +  G  +   +++E G++     
Sbjct: 339 KPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKRE-GIVLNCHL 397

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
              +VD++ + G L +A +    V  E+    VW+AM+    MH
Sbjct: 398 ISSLVDMYAKCGSLEKALEVFYSV--EERDVYVWSAMIAGLGMH 439


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/600 (39%), Positives = 367/600 (61%), Gaps = 34/600 (5%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPDS 71
           +L+    ++ L+Q+H  ++  G        +KLL+     ++G + YA+ +F  I  P++
Sbjct: 24  LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNT 83

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           F++NT+I   S +    ++LL Y  M+  ++  + YTF  ++K+C+ +S L   + +H H
Sbjct: 84  FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAH 143

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY--------- 182
           +   G+ S+++   +L+N Y+KS ++  AR +FD++  +  V+WNSMI GY         
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMA 203

Query: 183 --------EQN--------------GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
                   E+N              G  KEA+ LF+ M+  G+  D+   V  L ACA L
Sbjct: 204 YEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADL 263

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
           G +D G+W+H +I    ++++ +L   LI+MYA+CG++ +A E+F  M E  V  WTAMI
Sbjct: 264 GVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMI 323

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           SGY +HG G EA+E F +M+  GV PN +TF  +L+AC+HAGLV E   +F SM + +G 
Sbjct: 324 SGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGF 383

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P +EH+ CMVDL GRAGLL EA + +++ +  KP  A+W A+L AC +H N +LG ++ 
Sbjct: 384 KPSIEHYGCMVDLLGRAGLLKEAEELIEN-MPVKPNAAIWGALLNACHIHGNLELGKQIG 442

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           + L+ V+P + G Y+ L++I+A AG  ++   VR  M ++G+ K  G S + V+   + F
Sbjct: 443 KILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEF 502

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
             GD+SHP   EI   L++++ R RE GY P+    + +LE++E+E ++ +HSEKLA+ F
Sbjct: 503 LAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTF 562

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+ T PGMTIRIVKNLR+C DCH+ IK IS    REI++RDR RFH FK G+C+C DYW
Sbjct: 563 GLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/558 (41%), Positives = 355/558 (63%), Gaps = 3/558 (0%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            Q+VHAH+I   Y     + T+L+ L      +  A+R+   +P  +   +  +I   S+ 
Sbjct: 497  QRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQR 556

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             +++++L  +  M++S  +P+ +TF+ V+ SC   S   LGR +H  V  + ++S + V 
Sbjct: 557  GYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVG 616

Query: 145  AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            ++L++ YAK+  +  AR+VFD +P++ VV+  ++ISGY Q G  +EA+ LF  ++  G+ 
Sbjct: 617  SSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMR 676

Query: 205  PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
             +  T   VL A + L  +D GR VH  ++   L   VVL  SLI+MY++CG+++ +R I
Sbjct: 677  SNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRI 736

Query: 265  FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGL 323
            FD M E  VI+W AM+ GY  HG G EAVELF  M+    V+P++VTF+AVLS C+H G+
Sbjct: 737  FDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGM 796

Query: 324  VQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
               G  +F  M  Q+ G  P +EH+ C+VDLFGRAG + EA++F+K +  E P  A+W +
Sbjct: 797  EDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFE-PTAAIWGS 855

Query: 383  MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
            +LGAC++H+N  +G  VA  LL +E EN G+YV+LSN+YA AGR D V  VR +M +K +
Sbjct: 856  LLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAV 915

Query: 443  KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
             K  G S +E+DQ  + F   D+SHP   E++  + EL  + +EAGYVPE    ++++++
Sbjct: 916  IKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDD 975

Query: 503  EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
            E++E  L+ HSEKLALAFGL+ T  G  +RI+KNLR+CVDCH+  KF+S    RE+ +RD
Sbjct: 976  EQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRD 1035

Query: 563  RLRFHHFKRGSCSCLDYW 580
            + RFHH   G+CSC DYW
Sbjct: 1036 KNRFHHIVGGTCSCGDYW 1053



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 180/359 (50%), Gaps = 42/359 (11%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           + +V+  C   + +  G+ VH H+  + Y+  ++++  L+  Y K   +  AR+V D MP
Sbjct: 480 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 539

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           +++VV+W +MISGY Q G+A EA+ LF  M   G  P+  T   VL +C       LGR 
Sbjct: 540 ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 599

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H  ++    + ++ + +SL++MYA+ G + +AR +FD + E +V++ TA+ISGY   G 
Sbjct: 600 IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 659

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHH 347
             EA++LF R++  G+R N VT+ +VL+A +    +  G +V + + +    LP  V   
Sbjct: 660 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR--AKLPFYVVLQ 717

Query: 348 VCMVDLFGRAGLLN----------------------------------EAYKFVKDVIGE 373
             ++D++ + G L                                   E +K +K+    
Sbjct: 718 NSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV 777

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS----VEPENPGHYVMLSNIYALAGRMD 428
           KP    + A+L  C      D G+E+   +++     EPE   HY  + +++  AGR++
Sbjct: 778 KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIE-HYGCVVDLFGRAGRVE 835


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/589 (40%), Positives = 363/589 (61%), Gaps = 14/589 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   +   +K+   L  L   +Q H   +V G+     + + L+ +    G ++ A+ 
Sbjct: 79  KPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARV 138

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN---------ISPSNYTFSAV 112
           +F  IP  +   + +LI    + + + ++L+ ++  +             S  +    +V
Sbjct: 139 LFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISV 198

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           + +C+ +S   +   VH      G D  + V+  L++ YAK   V ++RKVFD M +K V
Sbjct: 199 LSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDV 258

Query: 173 VAWNSMISGYEQNGFAKEAIGLFN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           V+WNSMI+ Y QNG + +A  +F+ +++  G   +  T   +L ACA  G + +G  +H+
Sbjct: 259 VSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHD 318

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
            ++  G   NV++ATS+I+MY +CG    AR  FD M E NV +WTAMI+GYGMHG+  E
Sbjct: 319 QVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFARE 378

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           A+++F++M   GV+PN +TF++VL+AC+HAG ++EG R F +M  EY + PGVEH+ CMV
Sbjct: 379 ALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMV 438

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411
           DL GRAG + EAY  +K +   +    +W ++L AC++HK+ +L    A  L  ++P N 
Sbjct: 439 DLLGRAGYIKEAYNLIKSMKVRRDF-VLWGSLLAACRIHKDVELAEISARELFKLDPSNC 497

Query: 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTN 471
           G+YV+L+NIYA AGR   VE +R ++  +GL K  GYS VE+  + ++F +GDK HP   
Sbjct: 498 GYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHE 557

Query: 472 EIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTI 531
           +IY+YL+EL  + +EAGYVP   S +H+++EEE+E  +R HSEKLA+AFG+M + PG TI
Sbjct: 558 KIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTI 617

Query: 532 RIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            ++KNLR+C DCH+ IK IS   +REIIVRD  RFHHFK G CSC DYW
Sbjct: 618 HVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 185/334 (55%), Gaps = 19/334 (5%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D + +N+LI   ++   S +SL  +  M   +I P+  TF   IKSC+ L  LN G+  H
Sbjct: 46  DVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAH 105

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
               V G++SDL V +AL++ Y+K   +  AR +FD +P +++V W S+I+GY QN  A 
Sbjct: 106 QQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAH 165

Query: 190 EAIGLFNLM---------RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           EA+ +F             + G + DS   + VL+AC+++ +  +   VH   +  GLD 
Sbjct: 166 EALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDK 225

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM- 299
            + +  +L++ YA+CG VS +R++FD M+E +V++W +MI+ Y  +G  T+A E+FH M 
Sbjct: 226 VMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGML 285

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF---GR 356
           +A G + N VT   +L ACAH G ++ G  +   + +  G +  V     ++D++   G+
Sbjct: 286 KAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIK-MGYVNNVIMATSIIDMYCKCGQ 344

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           A +   A+    D + EK   + WTAM+    MH
Sbjct: 345 AEMARNAF----DGMKEKNVRS-WTAMIAGYGMH 373


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/595 (40%), Positives = 358/595 (60%), Gaps = 36/595 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPDSFLFNTLI 78
           L+ L+Q+H  L++ G      ++ + ++ +   +   + Y+ ++     +P  F FN++I
Sbjct: 22  LRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNPTLFTFNSMI 81

Query: 79  IRNSKANFSTDSLLFYRRMIVSN--ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
             +SK++    S  FY R++ S   ++P NYTF+ ++++ A L     G +VH      G
Sbjct: 82  RAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYG 141

Query: 137 YDSDLHVQAALVNFYA-------------------------------KSNNVDVARKVFD 165
           ++ D HVQ+ L+  YA                               K  +V  ARK+FD
Sbjct: 142 FEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFD 201

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           +M  K  +AWN+MISGY Q G ++EA+ LFNLM+  GV  +  + V VL+AC+ LG +D 
Sbjct: 202 KMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQ 261

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           GRW H +I    L + + L T+LI+MYA+CGN++KA E+F  M E NV  W++ I G  M
Sbjct: 262 GRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAM 321

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           +G G + +ELF  M+   V+PN +TFV+VL  C+  GLV+EG + F SM + YG+ P +E
Sbjct: 322 NGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLE 381

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ CMVDL+GRAG L+EA  F+ + +  +P    W A+L ACK+++N ++G   +  ++ 
Sbjct: 382 HYGCMVDLYGRAGHLDEALNFI-NSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVE 440

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           +E +N G YV+LSNIYA +   DRV  VR  M  KG++K  G S +EV  + + F +GDK
Sbjct: 441 LEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDK 500

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
           SHP   EI   L E+  R + +GYV  +     ++EEEE+E +L  HSEK+A+AFGL+  
Sbjct: 501 SHPRYAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISL 560

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           SP + IRIVKNLR+C DCH A K IS A NREI+VRDR RFHHF+ G CSC  YW
Sbjct: 561 SPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/611 (38%), Positives = 364/611 (59%), Gaps = 37/611 (6%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLV------------ 50
           P+   +  +LK+  + K     QQ+H H++  GY     + T L+S+             
Sbjct: 101 PNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKV 160

Query: 51  -------------------CDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSL 91
                                 G+I  AQ++F  IP  D   +N +I   ++   + ++L
Sbjct: 161 FDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEAL 220

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
             ++ M+ +N+ P   T  +V+ +CA  + + LGR VH  +   G+ S+L +  AL++ Y
Sbjct: 221 ELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLY 280

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
            K   V+ A  +F+ +  K V++WN++I GY      KEA+ LF  M   G +P+  T +
Sbjct: 281 IKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTML 340

Query: 212 CVLAACAQLGDIDLGRWVHEFIVG--QGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
            +L ACA LG I++GRW+H +I    +G+       TSLI+MYA+CG++  A+++FD + 
Sbjct: 341 SILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSIL 400

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             ++ +W AMI G+ MHG    A ++F RMR + + P+++TFV +LSAC+H+G++  G  
Sbjct: 401 NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRH 460

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
           +F SM+++Y + P +EH+ CM+DL G +GL  EA + + + +  +P   +W ++L ACKM
Sbjct: 461 IFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMI-NTMEMEPDGVIWCSLLKACKM 519

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           + N +LG   A++L+ +EP+NPG YV+LSNIYA AGR + V  +R ++  KG+KK  G S
Sbjct: 520 YANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCS 579

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
           ++E+D   + F +GDK HP   EIY  L+E+     EAG+VP++   + E+EEE +E +L
Sbjct: 580 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGAL 639

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
           R+HSEKLA+AFGL+ T PG  + IVKNLR+C +CH A K IS    REII RDR RFHHF
Sbjct: 640 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHF 699

Query: 570 KRGSCSCLDYW 580
           + G CSC DYW
Sbjct: 700 RDGVCSCNDYW 710



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/443 (29%), Positives = 220/443 (49%), Gaps = 39/443 (8%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL-VCDAGF--ITYAQRIFFCIPSP 69
           ++L     L+ L+ +HA +I  G   +   L+KL+   V    F  + YA  +F  I  P
Sbjct: 7   SLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEP 66

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           +  ++NT+   ++ ++    +L  Y  MI   + P+ YTF  ++KSCA       G+ +H
Sbjct: 67  NLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIH 126

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR----------------------- 166
            HV   GYD DL+V  +L++ Y ++  ++ ARKVFD+                       
Sbjct: 127 GHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIA 186

Query: 167 --------MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
                   +P K VV+WN+MISGY + G  KEA+ LF  M    V PD +T V V++ACA
Sbjct: 187 SAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACA 246

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
           Q   I+LGR VH +I   G   N+ +  +LI++Y +CG V  A  +F+ +S  +VI+W  
Sbjct: 247 QSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNT 306

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           +I GY       EA+ LF  M   G  PN+VT +++L ACAH G ++ G  +   + +  
Sbjct: 307 LIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRL 366

Query: 339 -GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
            G+     H   ++D++ + G +  A +    ++    + + W AM+    MH   +   
Sbjct: 367 KGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNR--SLSSWNAMIFGFAMHGRANAAF 424

Query: 398 EVAEHLL--SVEPENPGHYVMLS 418
           ++   +    +EP++     +LS
Sbjct: 425 DIFSRMRKNEIEPDDITFVGLLS 447


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/600 (37%), Positives = 353/600 (58%), Gaps = 36/600 (6%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
            +L     L+   ++HA  + AG    R++  +L      +  +     +    P P + 
Sbjct: 40  GLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTV 99

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
            + + I  +S       +L     M+   + P+++T S+ + +C  L+   LGRA+H + 
Sbjct: 100 FYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLA---LGRALHAYA 156

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD----------------------- 169
           F      D +V  AL+  YA+  + D AR +FD MPD                       
Sbjct: 157 FKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDAR 216

Query: 170 --------KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
                   K  + WN+MI GY Q+G   EA+ LF  M   GV+PD    +  L+A AQLG
Sbjct: 217 ELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLG 276

Query: 222 DIDLGRWVHEFIV-GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             + GRW+H ++   + + +N  + T+LI+MY +CG++  A  +F+ + + +++ W AMI
Sbjct: 277 TAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMI 336

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GY MHG   +A+E+F ++R+ G+ P ++TF+ +L+AC+H+GLV EGH+ F SM +EY +
Sbjct: 337 NGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAI 396

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
           +P +EH+ CMVDL GRAGL+ EA+  V+ +    P   +W ++L AC++HKN  LG ++A
Sbjct: 397 VPKIEHYGCMVDLLGRAGLIEEAFHLVQSMT-IAPDTVMWVSLLAACRLHKNMALGQQIA 455

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           ++L++    N G Y++LSNIYA  G  + V  VR++M   G++K  G S +EV +K Y F
Sbjct: 456 DYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEF 515

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
             GD SHP T+EIY  L+++ G  +E G+VP++E  +H+L+E  +E +L  HSEKLA+AF
Sbjct: 516 VAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAF 575

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+ T+PG TI+IVKNLR C DCH+ +K IS  T R+I+ RDR RFHHF  GSC+C DYW
Sbjct: 576 GLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/529 (44%), Positives = 339/529 (64%), Gaps = 7/529 (1%)

Query: 57  TYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNIS-PSNYTFSAV 112
           +YA+ +F  IP P +F +N+LI      + A  + D++L YRRM+ +    P+++T +  
Sbjct: 78  SYARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFA 137

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM-PDKS 171
           +K+C+ +  L  GR +H   F  G +   +VQ  L+N YAK   V +AR VFD M  DK+
Sbjct: 138 LKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKN 197

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           + AW++MI GY + G   EA+GLF  M+   VNPD  T V V++ACA+ G +DLGRWVH 
Sbjct: 198 LAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHA 257

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
           FI  +G+ V++ L+T+LI+MYA+CG + +A+ +FD M+E +  AW+AMI G  +HG    
Sbjct: 258 FIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEV 317

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           A++LF RM    VRPNNVTF+ VLSACAH+GLV EG R +++M QE G+ P +E++ CMV
Sbjct: 318 ALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTM-QELGIKPSMENYGCMV 376

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411
           DLF R+ LL+EAY FV   +   P   +W  +L A K    FD+    ++ LL +EP NP
Sbjct: 377 DLFCRSSLLDEAYSFVTG-MAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELEPCNP 435

Query: 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTN 471
            +YV+LSN+YA   + DRV  +R  M +  +    G S++E++   + F + D SHP   
Sbjct: 436 ENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDSHPEIK 495

Query: 472 EIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTI 531
           EI   L E+  R   AG+ P + + +H++ EEE+E +L  HSE+LA+A+GL++T     I
Sbjct: 496 EIRLLLREIADRVVRAGHKPWTAAVLHDVGEEEKEVALCEHSERLAIAYGLLKTKAPHVI 555

Query: 532 RIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R+VKNLR C DCH   K +S + +REIIVRDR+RFH F  GSCSC D+W
Sbjct: 556 RVVKNLRFCPDCHEVAKIVSKSYDREIIVRDRVRFHRFVEGSCSCKDFW 604


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/600 (37%), Positives = 353/600 (58%), Gaps = 36/600 (6%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
            +L     L+   ++HA  + AG    R++  +L      +  +     +    P P + 
Sbjct: 39  GLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTV 98

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
            + + I  +S       +L     M+   + P+++T S+ + +C  L+   LGRA+H + 
Sbjct: 99  FYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLA---LGRALHAYA 155

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD----------------------- 169
           F      D +V  AL+  YA+  + D AR +FD MPD                       
Sbjct: 156 FKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDAR 215

Query: 170 --------KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
                   K  + WN+MI GY Q+G   EA+ LF  M   GV+PD    +  L+A AQLG
Sbjct: 216 ELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLG 275

Query: 222 DIDLGRWVHEFIV-GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             + GRW+H ++   + + +N  + T+LI+MY +CG++  A  +F+ + + +++ W AMI
Sbjct: 276 TAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMI 335

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GY MHG   +A+E+F ++R+ G+ P ++TF+ +L+AC+H+GLV EGH+ F SM +EY +
Sbjct: 336 NGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAI 395

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
           +P +EH+ CMVDL GRAGL+ EA+  V+ +    P   +W ++L AC++HKN  LG ++A
Sbjct: 396 VPKIEHYGCMVDLLGRAGLIEEAFHLVQSMT-IAPDTVMWVSLLAACRLHKNMALGQQIA 454

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           ++L++    N G Y++LSNIYA  G  + V  VR++M   G++K  G S +EV +K Y F
Sbjct: 455 DYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEF 514

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
             GD SHP T+EIY  L+++ G  +E G+VP++E  +H+L+E  +E +L  HSEKLA+AF
Sbjct: 515 VAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAF 574

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+ T+PG TI+IVKNLR C DCH+ +K IS  T R+I+ RDR RFHHF  GSC+C DYW
Sbjct: 575 GLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/579 (40%), Positives = 354/579 (61%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
            P    +  +LKA   L        +H  +I  G+G    +   L++L    G I  A+ 
Sbjct: 151 HPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKV 210

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +       + ++I   ++   + ++L  + +M  + + P      +++++   +  
Sbjct: 211 VFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDD 270

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  GR++H  V   G + +  +  +L  FYAK   V VA+  FD+M   +V+ WN+MISG
Sbjct: 271 LEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISG 330

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y +NG A+EA+ LF+ M    + PDS T    + A AQ+G ++L +W+ +++       +
Sbjct: 331 YAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSD 390

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + + TSLI+MYA+CG+V  AR +FD  S+ +V+ W+AMI GYG+HG G EA+ L+H M+ 
Sbjct: 391 IFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQ 450

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV PN+VTF+ +L+AC H+GLV+EG  +F  M+ ++ ++P  EH+ C+VDL GRAG L 
Sbjct: 451 AGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMK-DFEIVPRNEHYSCVVDLLGRAGYLG 509

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA  F+  +  E P  +VW A+L ACK+++   LG   A  L S++P N GHYV LSN+Y
Sbjct: 510 EACAFIMKIPIE-PGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLY 568

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A +   D V  VR +M +KGL K +GYS +E++ K   F +GDKSHP   EI+  L  L 
Sbjct: 569 ASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLE 628

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            R +E G+VP +ES +H+L  EE+E +L +HSE++A+A+GL+ T+PG T+RI KNLR CV
Sbjct: 629 RRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACV 688

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +CHSAIK IS    REIIVRD  RFHHFK G CSC DYW
Sbjct: 689 NCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 211/381 (55%), Gaps = 5/381 (1%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           Y +++      + L Q+H  L+++G   +  ++TKL++   + G I YA+++F     PD
Sbjct: 59  YASLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPD 118

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
            F++N +I   S+ N   D++  YR M  + + P  +TF  V+K+C  L    L   +H 
Sbjct: 119 VFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHG 178

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
            +   G+ SD+ VQ  LV  YAK  ++ VA+ VFD +  +++V+W S+ISGY QNG A E
Sbjct: 179 QIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVE 238

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ +F+ MR+ GV PD    V +L A   + D++ GR +H F++  GL+    L  SL  
Sbjct: 239 ALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTA 298

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
            YA+CG V+ A+  FD M   NVI W AMISGY  +G+  EAV LFH M +  ++P++VT
Sbjct: 299 FYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVT 358

Query: 311 FVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
             + + A A  G ++    +   + +  YG    +  +  ++D++ + G +  A + V D
Sbjct: 359 VRSAVLASAQVGSLELAQWMDDYVSKSNYG--SDIFVNTSLIDMYAKCGSVEFARR-VFD 415

Query: 370 VIGEKPAPAVWTAMLGACKMH 390
              +K    +W+AM+    +H
Sbjct: 416 RNSDKDV-VMWSAMIMGYGLH 435


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/611 (39%), Positives = 358/611 (58%), Gaps = 37/611 (6%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVC------DA--- 53
           P+S  +  +LK+  +LK  +   Q+H H++  GY     + T L+S+        DA   
Sbjct: 61  PNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKV 120

Query: 54  ----------------------GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSL 91
                                 G+I  A+ +F  IP  D   +N +I    +     ++L
Sbjct: 121 FDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEAL 180

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
             ++ M+ +N+ P   T   VI + A    + LGR VH  +   G+ S+L +  AL++FY
Sbjct: 181 ELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFY 240

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
           +K   ++ A  +F  +  K V++WN +I GY      KEA+ LF  M   G +P+  T +
Sbjct: 241 SKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTML 300

Query: 212 CVLAACAQLGDIDLGRWVHEFIVG--QGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
            +L ACA LG ID+GRW+H +I    +G+     L TSLI+MY++CG++  A ++F+ M 
Sbjct: 301 SILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSML 360

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             ++ AW AMI G+ MHG    A ++F RMR + ++P+++TFV +LSAC+HAG++  G  
Sbjct: 361 HKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRH 420

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
           +F SM   Y + P +EH+ CM+DL G +GL  EA + +  +  E P   +W ++L ACKM
Sbjct: 421 IFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTME-PDGVIWCSLLKACKM 479

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           H N +LG + A++L  +EP NPG YV+LSNIYA AGR + V  +R ++  KG+KK  G S
Sbjct: 480 HGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCS 539

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
           ++E+D   + F +GDK HP   EIY  L+E+    +EAG+VP++   + E+EEE +E +L
Sbjct: 540 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGAL 599

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
           R+HSEKLA+AFGL+ T P   + IVKNLR+C +CH A K IS    REII RDR RFHHF
Sbjct: 600 RHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHF 659

Query: 570 KRGSCSCLDYW 580
           + G CSC DYW
Sbjct: 660 RDGVCSCNDYW 670



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 185/367 (50%), Gaps = 34/367 (9%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           + YA  +F  I  P+  ++NT+   ++ +     +L  Y  MI   + P++YTF  ++KS
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR--------- 166
           CA L     G  +H HV   GY+ DL+V  +L++ Y ++  ++ A KVFDR         
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSY 132

Query: 167 ----------------------MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
                                 +P K VV+WN+MISGY + G  KEA+ LF  M    V 
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVR 192

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD +T V V++A A+ G I+LGR VH +I   G   N+ +  +LI+ Y++CG +  A  +
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGL 252

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  +S  +VI+W  +I GY       EA+ LF  M   G  PN+VT +++L ACAH G +
Sbjct: 253 FLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAI 312

Query: 325 QEGHRVFASMRQEY-GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
             G  +   + +   G+         ++D++ + G +  A++    ++  K  PA W AM
Sbjct: 313 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSML-HKSLPA-WNAM 370

Query: 384 LGACKMH 390
           +    MH
Sbjct: 371 IFGFAMH 377



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 170/340 (50%), Gaps = 18/340 (5%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           N +P       ++ A  R   ++   QVH+ +   G+G +  ++  L+      G +  A
Sbjct: 190 NVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETA 249

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
             +F  +   D   +N LI   +  N   ++LL ++ M+ S  SP++ T  +++ +CAHL
Sbjct: 250 CGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHL 309

Query: 120 SILNLGRAVHCHV--FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
             +++GR +H ++   + G  +   ++ +L++ Y+K  +++ A +VF+ M  KS+ AWN+
Sbjct: 310 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNA 369

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV-----HEF 232
           MI G+  +G A  A  +F+ MR   + PD  T V +L+AC+  G +DLGR +     H +
Sbjct: 370 MIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNY 429

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTE 291
            +   L+        +I++    G   +A E+   M+ E + + W +++    MHG   E
Sbjct: 430 KITPKLE----HYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHG-NVE 484

Query: 292 AVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGHRV 330
             E F +     + PNN  ++V + +  A AG   E  R+
Sbjct: 485 LGEKFAQ-NLFKIEPNNPGSYVLLSNIYATAGRWNEVARI 523


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/566 (41%), Positives = 357/566 (63%), Gaps = 8/566 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSM--LTKLLSL--VCDAGFITYAQRIFFCIPSPDSFLFNT 76
           ++ L+Q+HA L+      S     L K++    +   G I YA+++F  I  P+ F +N+
Sbjct: 1   MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 60

Query: 77  LIIRNSKANF-STDSLLFYRRMIVSNI-SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           +I   S++   S + ++ +R+M+     +P+ +T + V+K+C+ +S L  G+ VH +V  
Sbjct: 61  MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLK 120

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
           SG+ S   V+ ALVNFYAK  ++ +A KVFD + D+++VAW++MISGY + G   EA+GL
Sbjct: 121 SGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGL 180

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           F  M+  GV PD  T V V++ACA  G +D G+WVH +I  Q ++ ++ L+T+L+NMYA+
Sbjct: 181 FRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAK 240

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CG + +A+E+FD M   +  AW++MI G  ++G   +A+E F RM    V+PN+VTF+ V
Sbjct: 241 CGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGV 300

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           LSACAH+GLV EG R ++SM  E+G++P +E + CMVDL  RA L+ +A   V + +   
Sbjct: 301 LSACAHSGLVSEGRRYWSSM-LEFGIVPSMELYGCMVDLLCRASLVEDACTLV-ETMPIS 358

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P P +W  +L  CK  KN D    VA+ LL +EP N  +Y++LSN+YA   + +++  VR
Sbjct: 359 PNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVR 418

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
             M   G+K   G S++EVD   + F MGD SHP   E+ + L ++  R    G+ P   
Sbjct: 419 KKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGIS 478

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
             +H + +EE+E +L  HSE+LA+A+GL++T   M IRIVKNLR+C DCH   K IS   
Sbjct: 479 DVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEY 538

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
            REIIVRDR+RFH F  GSCSC D+W
Sbjct: 539 RREIIVRDRVRFHKFVNGSCSCRDFW 564


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/561 (42%), Positives = 351/561 (62%), Gaps = 10/561 (1%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDA---GFITYAQRIFFCIPSPDSFLFNTLIIR 80
           + ++HA L+  G+      L +LL L C A     ++YA+ IF  I  PD+F FNT IIR
Sbjct: 4   IYKLHARLLKTGHHNHPLALRRLL-LSCAASAPASLSYARSIFDLIAFPDTFAFNT-IIR 61

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
               +  + SL  + +M ++ +SP ++TF  V+K+CA L     G  +H  +F  G+DSD
Sbjct: 62  AHADSSPSFSLSLFSKMTMAGVSPDHFTFPFVLKACARLQT---GLDLHSLLFKLGFDSD 118

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           ++VQ  L++FY     +D A K F+ MP++ +V+W+SMI+ + +NGF  EA+ LF  M+ 
Sbjct: 119 VYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQL 178

Query: 201 FG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
            G V PD    + V++A + LGD++LG+W+  FI   GL+  V L T+L++M++RCG + 
Sbjct: 179 VGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIE 238

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           ++  +FD M E NV+ WTA+I+G  +HG   EA+ +F+ MR HG +P++VTF  VL AC+
Sbjct: 239 ESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACS 298

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H GLV EG  VF S+R EYG+ P  EH+ CMVDL GRAGLLNEA KFV D +  +P   +
Sbjct: 299 HGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFV-DGMPIRPNSII 357

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W  +LGAC  H   +L  +V E +  ++  + G YV+LSN+Y   GR      VRN M +
Sbjct: 358 WRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMRE 417

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           K + K  G S + V+   + F  GD +HP    I ++L  ++   +  GY P+  + + +
Sbjct: 418 KRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFD 477

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           +EEEE+E +L YHSEKLA+AF L+      TIR++KNLR+C DCH  +K+ S    REII
Sbjct: 478 IEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREII 537

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           +RDR RFHHF +GSCSC DYW
Sbjct: 538 IRDRNRFHHFSKGSCSCRDYW 558



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 141/291 (48%), Gaps = 3/291 (1%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           M    P    +  +LKA  RL+    +H+ L   G+     +   L+      GF+ +A 
Sbjct: 80  MAGVSPDHFTFPFVLKACARLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFAL 139

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM-IVSNISPSNYTFSAVIKSCAHL 119
           + F  +P  D   ++++I   +K  F  ++L  ++RM +V  + P      +V+ + + L
Sbjct: 140 KAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISIL 199

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             L LG+ +   +  +G +  + +  ALV+ +++   ++ + +VFD M +++V+ W ++I
Sbjct: 200 GDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALI 259

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GL 238
           +G   +G + EA+ +F  MR+ G  PD  T   VL AC+  G +  G  V E I  + G+
Sbjct: 260 NGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGM 319

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGY 288
           +        ++++  R G +++A +  D M    N I W  ++     H Y
Sbjct: 320 EPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNY 370


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/540 (41%), Positives = 337/540 (62%), Gaps = 4/540 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L++     G +  A+++F  I   D   +N +I    +     ++L  ++ M+ +N+ 
Sbjct: 153 TALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVR 212

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS-GYDSDLHVQAALVNFYAKSNNVDVARK 162
           P   T  +V+ +CA    + LGR +H  V    G+ S L +  A +  Y+K  +V++A  
Sbjct: 213 PDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASG 272

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           +F+ +  K VV+WN++I GY      KEA+ LF  M   G +P+  T + VL ACA LG 
Sbjct: 273 LFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGA 332

Query: 223 IDLGRWVHEFIVG--QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
           ID+GRW+H +I    +G+     L TSLI+MYA+CG++  A ++F+ M   ++ +W AMI
Sbjct: 333 IDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMI 392

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
            G+ MHG    A +LF RMR +G+ P+++T V +LSAC+H+GL+  G  +F S+ Q+Y +
Sbjct: 393 FGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNI 452

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P +EH+ CM+DL G AGL  EA + +  ++  +P   +W ++L ACKMH N +L    A
Sbjct: 453 TPKLEHYGCMIDLLGHAGLFKEAEEIIH-MMPMEPDGVIWCSLLKACKMHGNLELAESFA 511

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           + L+ +EPEN G YV+LSNIYA AGR + V  +R ++  KG+KK  G S++E+D   + F
Sbjct: 512 QKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEF 571

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
            +GDK HP + EIY+ L+E+     EAG+VP++   + E+EEE +E +LR+HSEKLA+AF
Sbjct: 572 IIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAF 631

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+ T PG  + +VKNLR+C +CH A K IS    REI+ RDR RFHHF+ G CSC DYW
Sbjct: 632 GLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 205/424 (48%), Gaps = 44/424 (10%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSL-VCDAGF--ITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
            HA ++  G   +   L+KLL L V    F  + YA  +F     P+  ++NT++   + 
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
           ++     L  Y RM+     P+ YTF  ++KSCA       GR +H  V   G + D + 
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 144 QAALVNFYAKSN-------------------------------NVDVARKVFDRMPDKSV 172
             +L++ YA++                                +V  ARKVFD + ++ V
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           V+WN+MI+GY +N   +EA+ LF  M    V PD  T V VL+ACAQ G I+LGR +H  
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 233 IVG-QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
           +    G   ++ +  + I +Y++CG+V  A  +F+ +S  +V++W  +I GY       E
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY-GLLPGVEHHVCM 350
           A+ LF  M   G  PN+VT ++VL ACAH G +  G  +   + +   G+  G      +
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSL 360

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKN----FDLGVEVAEHLLSV 406
           +D++ + G +  A++    ++    + + W AM+    MH      FDL   + ++   +
Sbjct: 361 IDMYAKCGDIEAAHQVFNSMM--HKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKN--GI 416

Query: 407 EPEN 410
           EP++
Sbjct: 417 EPDD 420



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/261 (19%), Positives = 111/261 (42%), Gaps = 32/261 (12%)

Query: 33  VAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII---RNSKANFSTD 89
           + G     ++ T L+ +    G I  A ++F  +       +N +I     + +AN + D
Sbjct: 347 LKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFD 406

Query: 90  SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS-----GYDSDLHVQ 144
               + RM  + I P + T   ++ +C+H  +L+LGR    H+F S          L   
Sbjct: 407 ---LFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGR----HIFKSVTQDYNITPKLEHY 459

Query: 145 AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             +++    +     A ++   MP +   V W S++   + +G  + A      + +  +
Sbjct: 460 GCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLME--I 517

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRW-----VHEFIVGQGLD----VNVVLATSLINMYAR 254
            P+++    +L+          GRW     + E + G+G+      + +   S+++ +  
Sbjct: 518 EPENSGSYVLLSNIYATA----GRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFII 573

Query: 255 CGNV-SKAREIFDMMSELNVI 274
              +  ++REI+ M+ E++V+
Sbjct: 574 GDKLHPQSREIYRMLEEMDVL 594


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/579 (39%), Positives = 362/579 (62%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKAGPR---LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   + +IL A  R   LK  +Q+H  +I AGY     + T LLS+    G +  A+ 
Sbjct: 404 EPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARN 463

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  I   +   +N +I    +     +++  ++ ++   I P + TF++++  C     
Sbjct: 464 VFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDA 523

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L LG+ V   +  +G++SDLH++ ALV+ +    ++  A  +F+ MP++ +V+WN++I+G
Sbjct: 524 LELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAG 583

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + Q+G  + A   F +M++ GV PD  T   +L ACA    +  GR +H  I    LD +
Sbjct: 584 FVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCD 643

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           VV+ T LI+MY +CG++  A  +F  + + NV +WT+MI+GY  HG G EA+ELF +M+ 
Sbjct: 644 VVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQ 703

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV+P+ +TFV  LSACAHAGL++EG   F SM+ ++ + P +EH+ CMVDLFGRAGLL+
Sbjct: 704 EGVKPDWITFVGALSACAHAGLIKEGLHHFESMK-DFNIEPRMEHYGCMVDLFGRAGLLH 762

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA +F+ + +  KP   +W A+LGAC++H + +L  +VA+  L ++P + G YV+LSNIY
Sbjct: 763 EAVEFI-NKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIY 821

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AG    V  +R +M+ +G+ K  G S +EVD + ++F   DK+HP   EI+  L  L 
Sbjct: 822 AAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLH 881

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              ++ GYVP++   +H++E+ E+E++L +HSE+LA+A+GL++T P   I I KNLR+C 
Sbjct: 882 MEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLKTPPLTPIVISKNLRVCG 941

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+A K IS  T R+II RD  RFHHFK G CSC D+W
Sbjct: 942 DCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 119/444 (26%), Positives = 230/444 (51%), Gaps = 9/444 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           Q H   Y ++L+   + K L   +++H H+  +       M   L+S+    G    A++
Sbjct: 101 QIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQ 160

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF  +P  D + +N L+    +     ++   + +M+   + P  YTF  ++ +CA    
Sbjct: 161 IFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKN 220

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           ++ G  +   +  +G+D+DL V  AL+N + K   VD A KVF+ +P + ++ W SMI+G
Sbjct: 221 VDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITG 280

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             ++   K+A  LF +M + GV PD    V +L AC     ++ G+ VH  +   GLD  
Sbjct: 281 LARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTE 340

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + + T+L++MY +CG++  A E+F+++   NV++WTAMI+G+  HG   EA   F++M  
Sbjct: 341 IYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIE 400

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ PN VTF+++L AC+    +++G ++   + +  G +        ++ ++ + G L 
Sbjct: 401 SGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKA-GYITDDRVRTALLSMYAKCGSLM 459

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLSN 419
           +A    + +   K     W AM+ A   H+ +D  V   + LL   ++P++   +  + N
Sbjct: 460 DARNVFERI--SKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSST-FTSILN 516

Query: 420 IYALAGRMDRVEVVRNIMIQKGLK 443
           +      ++  + V++++I+ G +
Sbjct: 517 VCKSPDALELGKWVQSLIIRAGFE 540



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 205/389 (52%), Gaps = 6/389 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP   A+ ++LKA    + L+Q   VHA +   G      + T LLS+    G +  A  
Sbjct: 303 QPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALE 362

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   +   +  +I   ++     ++ LF+ +MI S I P+  TF +++ +C+  S 
Sbjct: 363 VFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSA 422

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  GR +H  +  +GY +D  V+ AL++ YAK  ++  AR VF+R+  ++VVAWN+MI+ 
Sbjct: 423 LKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITA 482

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q+     A+  F  +   G+ PDS+T   +L  C     ++LG+WV   I+  G + +
Sbjct: 483 YVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESD 542

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +  +L++M+  CG++  A  +F+ M E ++++W  +I+G+  HG    A + F  M+ 
Sbjct: 543 LHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQE 602

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV+P+ +TF  +L+ACA    + EG R+ A +  E  L   V     ++ ++ + G ++
Sbjct: 603 SGVKPDQITFTGLLNACASPEALTEGRRLHA-LITEAALDCDVVVGTGLISMYTKCGSID 661

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           +A+    ++   K     WT+M+     H
Sbjct: 662 DAHLVFHNL--PKKNVYSWTSMITGYAQH 688



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 166/316 (52%), Gaps = 3/316 (0%)

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           N  + R SKA   ++++L    +   +I     T+S++++ C     L  G  +H H+  
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
           S    D+ +   L++ YAK  N + A+++FD MPDK V +WN ++ GY Q+   +EA  L
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRL 192

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
              M   GV PD  T V +L ACA   ++D G  +   I+  G D ++ + T+LINM+ +
Sbjct: 193 HEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIK 252

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CG V  A ++F+ +   ++I WT+MI+G   H    +A  LF  M   GV+P+ V FV++
Sbjct: 253 CGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSL 312

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L AC H   +++G RV A M+ E GL   +     ++ ++ + G + +A +    V G  
Sbjct: 313 LKACNHPEALEQGKRVHARMK-EVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRN 371

Query: 375 PAPAVWTAMLGACKMH 390
                WTAM+     H
Sbjct: 372 VVS--WTAMIAGFAQH 385


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/628 (38%), Positives = 360/628 (57%), Gaps = 65/628 (10%)

Query: 16  KAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFL 73
           K+   L+ L Q+HA ++ +G+ +   +   LL    +  F    +A ++F  IP+P+ F+
Sbjct: 41  KSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFI 100

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N +I    + N    ++ FY RM++ +  P+ +T+  + K+C+    +  GR +H HV 
Sbjct: 101 WNIVIKGCLENNKLFKAIYFYGRMVI-DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVV 159

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARK------------------------------V 163
             G  SD+H+++A +  YA    ++ ARK                              +
Sbjct: 160 KHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGL 219

Query: 164 FDRMPDKSVVAWN-------------------------------SMISGYEQNGFAKEAI 192
           F +MP K++ +WN                               SM+ GY   G  KEA+
Sbjct: 220 FAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEAL 279

Query: 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252
            +F  M+     P       VLAAC+ +G ID GRWVH ++    + ++ VL T+L++MY
Sbjct: 280 EIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMY 339

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
           A+CG +    E+F+ M E  +  W AMI G  +HG   +A+ELF +++   ++PN +T V
Sbjct: 340 AKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLV 399

Query: 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372
            VL+ACAHAG V +G R+F +MR+ YG+ P +EH+ CMVDL GR+GL +EA   + + + 
Sbjct: 400 GVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLI-NSMP 458

Query: 373 EKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432
            KP  AVW A+LGAC++H NFDL   V + LL +EP+N G YV+LSNIYA  GR D V  
Sbjct: 459 MKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSK 518

Query: 433 VRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPE 492
           +R +M  +G+K   G S V+++   + F MGD SHP   EIY+ L  +  R + AG+ P+
Sbjct: 519 IRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPD 578

Query: 493 SESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISV 552
           +   + +++EEE+E ++ YHSEKLA+AFGL+ T PG  I IVKNLR+C DCHSA K IS 
Sbjct: 579 TSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQ 638

Query: 553 ATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             +REIIVRDR+R+HHFK G+CSC D+W
Sbjct: 639 IFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 140/281 (49%), Gaps = 13/281 (4%)

Query: 12  EAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS 71
           +  LK G  L+  + + A + V   G    M+  L       G +  A+++F  +   D 
Sbjct: 205 DGYLKCGV-LEAAKGLFAQMPVKNIGSWNVMINGL----AKGGNLGDARKLFDEMSERDE 259

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
             +++++     A    ++L  +++M      P  +  S+V+ +C+++  ++ GR VH +
Sbjct: 260 ISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAY 319

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           +  +    D  +  AL++ YAK   +D+  +VF+ M ++ +  WN+MI G   +G A++A
Sbjct: 320 LKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDA 379

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG----RWVHEFIVGQGLDVNVVLATS 247
           + LF+ +++  + P+  T V VL ACA  G +D G    + + EF    G+D  +     
Sbjct: 380 LELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY---GVDPELEHYGC 436

Query: 248 LINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHG 287
           ++++  R G  S+A ++ + M  + N   W A++    +HG
Sbjct: 437 MVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHG 477


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/525 (41%), Positives = 337/525 (64%), Gaps = 1/525 (0%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           I   +R+F  +P  D   +NT+I   +++    D+L   R M  +++ P ++T S+V+  
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
            +    +  G+ +H +V   G DSD+++ ++LV+ YAKS  ++ + +VF R+  +  ++W
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           NS+++GY QNG   EA+ LF  M    V P +     V+ ACA L  + LG+ +H +++ 
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 371

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
            G   N+ +A++L++MY++CGN+  AR+IFD M+ L+ ++WTA+I G+ +HG+G EAV L
Sbjct: 372 GGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355
           F  M+  GV+PN V FVAVL+AC+H GLV E    F SM + YGL   +EH+  + DL G
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415
           RAG L EAY F+  +  E P  +VW+ +L +C +HKN +L  +VAE + +V+ EN G YV
Sbjct: 492 RAGKLEEAYNFISKMCVE-PTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYV 550

Query: 416 MLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQ 475
           ++ N+YA  GR   +  +R  M +KGL+K    S +E+  K + F  GD+SHP+ ++I +
Sbjct: 551 LMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINE 610

Query: 476 YLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVK 535
           +L  +M +  + GYV ++   +H+++EE +   L  HSE+LA+AFG++ T PG TIR+ K
Sbjct: 611 FLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTK 670

Query: 536 NLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           N+R+C DCH AIKFIS  T REIIVRD  RFHHF RG+CSC DYW
Sbjct: 671 NIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 206/437 (47%), Gaps = 55/437 (12%)

Query: 12  EAILKAGPRLKP---LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS 68
           + ++K   R+K     +Q+HA  I      S +  + ++S+  +   +  A  +F  + S
Sbjct: 9   KTLIKNPTRIKSKSQAKQLHAQFIRT-QSLSHTSASIVISIYTNLKLLHEALLLFKTLKS 67

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
           P    + ++I   +  +  + +L  +  M  S   P +  F +V+KSC  +  L  G +V
Sbjct: 68  PPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESV 127

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAK---------------------SNN----------- 156
           H  +   G D DL+   AL+N YAK                     SN+           
Sbjct: 128 HGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCI 187

Query: 157 ----VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVC 212
               +D  R+VF+ MP K VV++N++I+GY Q+G  ++A+ +   M    + PDS T   
Sbjct: 188 MPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSS 247

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
           VL   ++  D+  G+ +H +++ +G+D +V + +SL++MYA+   +  +  +F  +   +
Sbjct: 248 VLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRD 307

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
            I+W ++++GY  +G   EA+ LF +M    V+P  V F +V+ ACAH   +  G ++  
Sbjct: 308 GISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHG 367

Query: 333 SMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVK--DVIGEKPAPAVWTAMLGA 386
                Y L  G   ++     +VD++ + G +  A K     +V+ E      WTA++  
Sbjct: 368 -----YVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDE----VSWTAIIMG 418

Query: 387 CKMHKNFDLGVEVAEHL 403
             +H +    V + E +
Sbjct: 419 HALHGHGHEAVSLFEEM 435



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 143/267 (53%), Gaps = 8/267 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRN 81
           +++H ++I  G      + + L+ +   +  I  ++R+F  +   D   +N+L+   ++N
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQN 321

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
            + N   ++L  +R+M+ + + P    FS+VI +CAHL+ L+LG+ +H +V   G+ S++
Sbjct: 322 GRYN---EALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNI 378

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            + +ALV+ Y+K  N+  ARK+FDRM     V+W ++I G+  +G   EA+ LF  M+  
Sbjct: 379 FIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQ 438

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
           GV P+    V VL AC+ +G +D    + +      GL+  +    ++ ++  R G + +
Sbjct: 439 GVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEE 498

Query: 261 ARE-IFDMMSELNVIAWTAMISGYGMH 286
           A   I  M  E     W+ ++S   +H
Sbjct: 499 AYNFISKMCVEPTGSVWSTLLSSCSVH 525



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 125/305 (40%), Gaps = 48/305 (15%)

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV-NFYAKSNNVDVA 160
           +S S      +IK+   +   +  + +H     +   S  H  A++V + Y     +  A
Sbjct: 1   MSSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRT--QSLSHTSASIVISIYTNLKLLHEA 58

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
             +F  +    V+AW S+I  +       +A+  F  MR  G  PD      VL +C  +
Sbjct: 59  LLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMM 118

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR---------CGNV------------- 258
            D+  G  VH FIV  G+D ++    +L+NMYA+          GNV             
Sbjct: 119 MDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGD 178

Query: 259 --------------SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
                            R +F++M   +V+++  +I+GY   G   +A+ +   M    +
Sbjct: 179 EDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDL 238

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLL 360
           +P++ T  +VL   +    V +G  +       Y +  G++  V     +VD++ ++  +
Sbjct: 239 KPDSFTLSSVLPIFSEYVDVIKGKEIHG-----YVIRKGIDSDVYIGSSLVDMYAKSARI 293

Query: 361 NEAYK 365
            ++ +
Sbjct: 294 EDSER 298


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/611 (38%), Positives = 360/611 (58%), Gaps = 37/611 (6%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVC------DA--- 53
           P+S ++  +LK+  + K L   QQ+H H++  GY     + T L+S+        DA   
Sbjct: 63  PNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKV 122

Query: 54  ----------------------GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSL 91
                                 G+I  A+++F  I   D   +N +I    +     ++L
Sbjct: 123 FDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEAL 182

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
             Y+ M+ +N+ P   T   V+ +CA    + LGR +H  +   G+ S++ +   L++ Y
Sbjct: 183 ELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLY 242

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
           +K   V+ A  +F  +  K V++WN++I G+      KEA+ LF  M   G +P+  T +
Sbjct: 243 SKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTML 302

Query: 212 CVLAACAQLGDIDLGRWVHEFIVG--QGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
            VL ACA LG ID+GRW+H +I    +G+     L TSLI+MYA+CG++  A+++FD M 
Sbjct: 303 SVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSML 362

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             ++ +W AMI G+ MHG    A +LF +MR +G+ P+++TFV +LSAC+H+G++  G  
Sbjct: 363 TRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRH 422

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
           +F SM Q+Y + P +EH+ CM+DL G  GL  EA + ++ +  E P   +W ++L ACKM
Sbjct: 423 IFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPME-PDGVIWCSLLKACKM 481

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           H N +LG   A++L+ +EPENPG YV+LSNIYA AGR D+V  +R ++  KG+KK  G S
Sbjct: 482 HNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCS 541

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
           ++E+D   + F +GDK HP   EIY+ L+E+     E G+VP++   + E+EEE +E +L
Sbjct: 542 SIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGAL 601

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
           R+HSEKLA+AFGL+ T PG  + IVKNLR+C +CH A K IS    REII RDR R H  
Sbjct: 602 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLL 661

Query: 570 KRGSCSCLDYW 580
           K G  SC DYW
Sbjct: 662 KDGVWSCHDYW 672



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/376 (31%), Positives = 192/376 (51%), Gaps = 38/376 (10%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           ++YA  IF  I  P+  ++NT+   ++  + S  +L  Y  MI   + P++Y+F  ++KS
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR--------- 166
           CA    L  G+ +H HV   GYD D++V  +L++ YA++  ++ A KVFDR         
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSY 134

Query: 167 ----------------------MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
                                 +  K VV+WN+MISGY +    KEA+ L+  M    V 
Sbjct: 135 TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVK 194

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD +T V V++ACAQ G I+LGR +H +I   G   N+ +   LI++Y++CG V  A  +
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGL 254

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  +++ +VI+W  +I G+       EA+ LF  M   G  PN+VT ++VL ACAH G +
Sbjct: 255 FQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAI 314

Query: 325 QEGHRVFASMRQEY-GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
             G  +   + +   G+         ++D++ + G + EA K V D +  +   + W AM
Sbjct: 315 DIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDI-EAAKQVFDSMLTRSLSS-WNAM 372

Query: 384 LGACKMHKN----FDL 395
           +    MH      FDL
Sbjct: 373 IFGFAMHGKANAAFDL 388



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 159/338 (47%), Gaps = 51/338 (15%)

Query: 147 LVNFYAKSNNVD---VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
           L+ F   S + D    A  +F+ + + +++ WN+M  G+  N  +  A+ L+  M   G+
Sbjct: 2   LIEFSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGL 61

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            P+S +   +L +CA+   +  G+ +H  ++  G D+++ + TSLI+MYA+ G +  A +
Sbjct: 62  LPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHK 121

Query: 264 IFDMMSELNVIAWTAMISGYGMHGY-------------------------------GTEA 292
           +FD  S  +V+++TA+I+GY   GY                                 EA
Sbjct: 122 VFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEA 181

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           +EL+  M    V+P+  T V V+SACA +G ++ G R   S  +++G    ++    ++D
Sbjct: 182 LELYKDMMKTNVKPDESTMVTVVSACAQSGSIELG-RQLHSWIEDHGFGSNIKIVNVLID 240

Query: 353 LFGRAGLLNEAYKFV-----KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
           L+ + G +  A         KDVI        W  ++G       +   + + + +L   
Sbjct: 241 LYSKCGEVETACGLFQGLAKKDVIS-------WNTLIGGHTHMNLYKEALLLFQEMLR-S 292

Query: 408 PENPGHYVMLSNIYALAGRMDRVEVVR--NIMIQKGLK 443
            E+P    MLS + A A  +  +++ R  ++ I K LK
Sbjct: 293 GESPNDVTMLSVLPACA-HLGAIDIGRWIHVYINKRLK 329


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/596 (38%), Positives = 361/596 (60%), Gaps = 36/596 (6%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLV---CDAGFITYAQRIFFCIPSPDSFLFNT 76
           + + L+Q+HA ++  G  +    +TK LS       + F+ YAQ +F     PD+FL+N 
Sbjct: 55  KQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNL 114

Query: 77  LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
           +I   S ++    SLL Y+RM+  +   + YTF +++K+C++LS L     +H  +   G
Sbjct: 115 MIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLG 174

Query: 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS------------------- 177
           Y++D++   +L+N YA + N  +A  +FDR+P    V+WNS                   
Sbjct: 175 YENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFR 234

Query: 178 ------------MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
                       MISGY Q G  KEA+ LF+ M++  V PD+ +    L+ACAQLG ++ 
Sbjct: 235 KMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQ 294

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+W+H ++    + ++ VL   LI+MYA+CG++ +A E+F  +   +V AWTA+ISGY  
Sbjct: 295 GKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAY 354

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           HG+G EA+  F  M+  G++PN +TF  VL+AC++ GLV+EG  +F +M ++Y L P +E
Sbjct: 355 HGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIE 414

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ C+VDL  RAGLL+EA +F+++ +  KP   +W A+L AC++HKN +LG E+ E L++
Sbjct: 415 HYGCVVDLLSRAGLLDEAKRFIQE-MPLKPNAVIWGALLKACRIHKNIELGEEIGEILIA 473

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           ++P + G YV  +NI+A+  + D+    R +M ++G+ K  G ST+ ++   + F  GD+
Sbjct: 474 IDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDR 533

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPE-SESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
           SHP   +I      +  +  E GYVPE  +  +  ++++ERE  +  HSEKLA+ +GL++
Sbjct: 534 SHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITYGLIK 593

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           T PG TIRI+KNLR+C DCH   K IS    R+I++RDR RFHHF+ G CSC DYW
Sbjct: 594 TKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 143/318 (44%), Gaps = 37/318 (11%)

Query: 6   PHSP-AYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           PH+   + ++LKA   L  L+   Q+HA +   GY      +  L++     G    A  
Sbjct: 141 PHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHL 200

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN-------------------- 101
           +F  IP PD+  +N++I   +KA     +L  +R+M+  N                    
Sbjct: 201 LFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEA 260

Query: 102 -----------ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNF 150
                      + P N + +  + +CA L  L  G+ +H ++  +    D  +   L++ 
Sbjct: 261 LQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDM 320

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
           YAK  ++  A +VF  +  KSV AW ++ISGY  +G  +EAI  F  M+  G+ P+  T 
Sbjct: 321 YAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITF 380

Query: 211 VCVLAACAQLGDIDLGRWV-HEFIVGQGLDVNVVLATSLINMYARCGNVSKARE-IFDMM 268
             VL AC+  G ++ G+ + +       L   +     ++++ +R G + +A+  I +M 
Sbjct: 381 TTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMP 440

Query: 269 SELNVIAWTAMISGYGMH 286
            + N + W A++    +H
Sbjct: 441 LKPNAVIWGALLKACRIH 458


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/630 (39%), Positives = 363/630 (57%), Gaps = 74/630 (11%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSM---LTKLLSLVCDAGFITYAQ--RIFFCIPSPDSFLFN 75
           L  L+Q HA ++  G+ +   +   L K  + V    ++++    R+F  +  P+ FL+N
Sbjct: 47  LHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWN 106

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC-------------AHLSIL 122
            +I    + N    ++L Y  M+V++  P+ YT+ AV+K+C             AHL   
Sbjct: 107 CMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKH 166

Query: 123 NLG---------------------------------RAVHCHVFVSGYDSDLHVQAA--- 146
            LG                                  AV  +  + GY     V+AA   
Sbjct: 167 GLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAAREL 226

Query: 147 ---------------LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
                          +++ +++   V+VAR+ FD M ++  ++W++MI GY Q G   EA
Sbjct: 227 FEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEA 286

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           + +F+ M+   + P       VL+ACA LG +D GRW+H +     + ++ VL TSL++M
Sbjct: 287 LEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDM 346

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           YA+CG +  A E+F+ MS   V +W AMI G  MHG   +A++LF +M    + PN +TF
Sbjct: 347 YAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITF 403

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           V VL+ACAH GLVQ+G  +F SMR+EYG+ P +EH+ C+VDL GRAGLL EA K V  + 
Sbjct: 404 VGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIP 463

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
            E P PAVW A+LGAC+ H N +LG  V + LL +EP+N G Y +LSNIYA AGR + V 
Sbjct: 464 TE-PTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVG 522

Query: 432 VVRNIMIQKGLKKHVGYSTVEVDQKN-YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
            VR +M ++G+K   G S +++ +   + F +GD SHP   +IYQ LD++  R +  GY 
Sbjct: 523 EVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYE 582

Query: 491 PESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFI 550
           P+    + +++EEE+E ++  HSEKLA+ FGL+ TSPG TIRIVKNLR+C DCHSA K I
Sbjct: 583 PDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLI 642

Query: 551 SVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S   NREIIVRDR+R+HHF+ G+CSC D+W
Sbjct: 643 SQVYNREIIVRDRIRYHHFRNGACSCKDFW 672


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/539 (42%), Positives = 336/539 (62%), Gaps = 3/539 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L++     G I  AQ++F  IP  D   +N +I   ++     ++L  +  M+  N+ 
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   T+  V+ +CAH   + LGR VH  V   G+DS+L +  AL++ Y+K   V+ A  +
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGL 253

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F  +  K V++WN++I GY      KEA+ LF  M   G  P+  T + VL ACA LG I
Sbjct: 254 FQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAI 313

Query: 224 DLGRWVHEFIVG--QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           D+GRW+H +I    +G+     L TSLI+MYA+CG++  A ++F+ M   ++ +W AMI 
Sbjct: 314 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIF 373

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           G+ MHG    + +LF RMR  G+ P+++TFV +LSAC+H+G++  G  +F SM Q+Y + 
Sbjct: 374 GFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMT 433

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P +EH+ CM+DL G +GL  EA + + + +  +P   +W ++L ACKMH N +L    A+
Sbjct: 434 PKLEHYGCMIDLLGHSGLFKEAEEMI-NTMEMEPDGVIWCSLLKACKMHGNVELAESFAQ 492

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
           +L+ +EPENP  Y++LSNIYA AGR + V  +R ++  K +KK  G S++EVD   + F 
Sbjct: 493 NLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFV 552

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
           +GDK HP   EIY  L+E+     EAG+VP++   + E+EEE +E +LR+HSEKLA+AFG
Sbjct: 553 VGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFG 612

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           L+ T PG  + IVKNLR+C +CH A K +S    REI+ RDR RFHHF+ G CSC DYW
Sbjct: 613 LISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 200/397 (50%), Gaps = 36/397 (9%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           + YA  +F  I  P+  ++NT+I  ++ ++    SL  Y  M+   + P++YTF  ++KS
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY------------------------ 151
           CA       G+ +H  V   G+D DL+V  +L++ Y                        
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133

Query: 152 -------AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
                  A   ++  A+K+FD +P K VV+WN+MISGY + G  KEA+ LF  M    V 
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD +T V VL+ACA  G I+LGR VH ++   G D N+ +  +LI++Y++CG V  A  +
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGL 253

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  +S  +VI+W  +I GY       EA+ LF  M   G  PN+VT ++VL ACAH G +
Sbjct: 254 FQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAI 313

Query: 325 QEGHRVFASMRQEY-GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
             G  +   + +   G+         ++D++ + G +  A++    ++ +  + + W AM
Sbjct: 314 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHK--SLSSWNAM 371

Query: 384 LGACKMHKNFDLGVEVAEHL--LSVEPENPGHYVMLS 418
           +    MH   D   ++   +  + +EP++     +LS
Sbjct: 372 IFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLS 408



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 170/338 (50%), Gaps = 10/338 (2%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           N +P    Y  +L A      ++   QVH+ +   G+  +  ++  L+ L    G +  A
Sbjct: 191 NVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETA 250

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
             +F  +   D   +NTLI   +  N   ++LL ++ M+ S  +P++ T  +V+ +CAHL
Sbjct: 251 CGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHL 310

Query: 120 SILNLGRAVHCHV--FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
             +++GR +H ++   + G  +   ++ +L++ YAK  +++ A +VF+ M  KS+ +WN+
Sbjct: 311 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNA 370

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           MI G+  +G A  +  LF+ MR  G+ PD  T V +L+AC+  G +DLGR +   +  Q 
Sbjct: 371 MIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMT-QD 429

Query: 238 LDVNVVLA--TSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVE 294
             +   L     +I++    G   +A E+ + M  E + + W +++    MHG   E  E
Sbjct: 430 YKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHG-NVELAE 488

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
            F +        N  +++ + +  A AG  ++  R+ A
Sbjct: 489 SFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRA 526


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/600 (39%), Positives = 366/600 (61%), Gaps = 34/600 (5%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPDS 71
           +L+    ++ L+Q+H  ++  G        +KLL+     ++G + YA+ +F  I  P++
Sbjct: 24  LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNT 83

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           F++NT+I   S +    ++LL Y  M+  ++  + YTF  ++K+C+ +S     + +H H
Sbjct: 84  FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAH 143

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY--------- 182
           +   G+ S+++   +L+N Y+KS ++  AR +FD++  +  V+WNSMI GY         
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMA 203

Query: 183 --------EQN--------------GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
                   E+N              G  KEA+ LF+ M+  G+  D+   V  L ACA L
Sbjct: 204 YEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADL 263

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
           G +D G+W+H +I    ++++ +L   LI+MYA+CG++ +A E+F  M E  V  WTAMI
Sbjct: 264 GVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMI 323

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           SGY +HG G EA+E F +M+  GV PN +TF  +L+AC+HAGLV E   +F SM + +G 
Sbjct: 324 SGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGF 383

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P +EH+ CMVDL GRAGLL EA + +++ +  KP  A+W A+L AC +H N +LG ++ 
Sbjct: 384 KPSIEHYGCMVDLLGRAGLLKEAEELIEN-MPVKPNAAIWGALLNACHIHGNLELGKQIG 442

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           + L+ V+P + G Y+ L++I+A AG  ++   VR  M ++G+ K  G S + V+   + F
Sbjct: 443 KILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEF 502

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
             GD+SHP   EI   L++++ R RE GY P+    + +LE++E+E ++ +HSEKLA+ F
Sbjct: 503 LAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTF 562

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+ T PGMTIRIVKNLR+C DCH+ IK IS    REI++RDR RFH FK G+C+C DYW
Sbjct: 563 GLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/611 (38%), Positives = 359/611 (58%), Gaps = 37/611 (6%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVC------DA--- 53
           P+S  +  +LK+  + K     QQ+H H++  GY     + T L+S+        DA   
Sbjct: 132 PNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKV 191

Query: 54  ----------------------GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSL 91
                                 G+I  AQ++F  IP  D   +N +I   ++     ++L
Sbjct: 192 FDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
             ++ M+ +NI P   T   V+ +CA    + LGR VH  +   G+ S+L +  +L++ Y
Sbjct: 252 ELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLY 311

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
           +K   ++ A  +F+ +  K V++WN++I GY      KEA+ LF  M   G  P+  T +
Sbjct: 312 SKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTML 371

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV--LATSLINMYARCGNVSKAREIFDMMS 269
            +L ACA LG ID+GRW+H +I  +         L TSLI+MYA+CG++  A ++F+ + 
Sbjct: 372 SILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSIL 431

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             ++ +W AMI G+ MHG    A ++F RMR  G+ P+++TFV +LSAC+ +G++  G  
Sbjct: 432 HKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRH 491

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
           +F +M Q+Y + P +EH+ CM+DL G +GL  EA + + ++  E P   +W ++L ACK+
Sbjct: 492 IFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEME-PDGVIWCSLLKACKI 550

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
             N +LG   A++L+ +EPENPG YV+LSNIYA AGR + V  +R ++  KG+KK  G S
Sbjct: 551 RGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCS 610

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
           ++E+D   + F +GDK HP   EIY  L+E+     +AG+VP++   + E+EEE +E +L
Sbjct: 611 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGAL 670

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
           R+HSEKLA+AFGL+ T PG  + IVKNLR+C +CH A K IS    REII RDR RFHHF
Sbjct: 671 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHF 730

Query: 570 KRGSCSCLDYW 580
           + G CSC DYW
Sbjct: 731 RDGVCSCNDYW 741



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 130/427 (30%), Positives = 216/427 (50%), Gaps = 39/427 (9%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSL-VCDAGF--ITYAQRIFFCIPSPDSFLFNTL 77
           L+ L+ +HA +I  G   +   L+KLL L V    F  + YA  +F  I  P+  ++NT+
Sbjct: 46  LQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTM 105

Query: 78  IIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
              ++ ++    +L  Y  MI   + P++YTF  ++KSCA       G+ +H HV   GY
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGY 165

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDR------------------------------- 166
           D DL V  +L++ Y ++  ++ ARKVFDR                               
Sbjct: 166 DLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDE 225

Query: 167 MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
           +P K VV+WN+MISGY + G  KEA+ LF  M    + PD +T V V++ACAQ G I+LG
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELG 285

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
           R VH +I   G   N+ +  SL+++Y++CG +  A  +F+ +   +VI+W  +I GY   
Sbjct: 286 RQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHM 345

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
               EA+ LF  M   G RPN+VT +++L ACAH G +  G  +   + +          
Sbjct: 346 NLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASS 405

Query: 347 -HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL-- 403
               ++D++ + G +  A++    ++ +  + + W AM+    MH   D   ++   +  
Sbjct: 406 LRTSLIDMYAKCGDIEAAHQVFNSILHK--SLSSWNAMIFGFAMHGRADAAFDIFSRMRK 463

Query: 404 LSVEPEN 410
           + +EP++
Sbjct: 464 IGIEPDD 470


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/594 (40%), Positives = 356/594 (59%), Gaps = 38/594 (6%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           ++QVHAH+I  G  +   +LTKL+ ++   D    +Y   +F  +  P+ FL+  +I   
Sbjct: 58  IKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGY 117

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH-VFVSGYDSD 140
           +     ++S  FY RM    + P ++TFSA+ K+C     ++LG+ VH   + + G+ SD
Sbjct: 118 ALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASD 177

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRM-------------------------------PD 169
           L+V  ++++ Y K   +  ARKVFD M                               P 
Sbjct: 178 LYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPS 237

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           K +VAW +M++GY QNG  KEA+  F  M+D G+  D  T   V++ACAQLG +    W+
Sbjct: 238 KDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWI 297

Query: 230 HEFI--VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +     G G   NVV+ ++LI+MY++CG+  +A ++F++M E NV ++++MI GY MHG
Sbjct: 298 RDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG 357

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
               A++LFH M    +RPN VTF+ +LSAC+HAGLV++G ++FA M + +G+ P  +H+
Sbjct: 358 RAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHY 417

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
            CMVDL GRAG L EA   VK +  E P   VW A+LGAC++H N D+    A  L  +E
Sbjct: 418 ACMVDLLGRAGCLEEALDLVKTMPME-PNGGVWGALLGACRIHGNPDIAQIAANELFKLE 476

Query: 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVE-VDQKNYLFSMGDKS 466
           P   G+Y++LSNIYA AGR + V  +R ++ +KG KK+ G S  E  + + + F  GD +
Sbjct: 477 PNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTT 536

Query: 467 HPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTS 526
           HP ++EI Q L +L+ R R  GY P   SA ++L ++E+E  L  HSEKLALA+GL+ T 
Sbjct: 537 HPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTE 596

Query: 527 PGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            G TI+I+KN+R+C DCH+ +   S  T REIIVRD +RFHHF  G+CSC ++W
Sbjct: 597 AGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/630 (39%), Positives = 363/630 (57%), Gaps = 74/630 (11%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSM---LTKLLSLVCDAGFITYAQ--RIFFCIPSPDSFLFN 75
           L  L+Q HA ++  G+ +   +   L K  + V    ++++    R+F  +  P+ FL+N
Sbjct: 48  LHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWN 107

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC-------------AHLSIL 122
            +I    + N    ++L Y  M+V++  P+ YT+ AV+K+C             AHL   
Sbjct: 108 CMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKH 167

Query: 123 NLG---------------------------------RAVHCHVFVSGYDSDLHVQAA--- 146
            LG                                  AV  +  + GY     V+AA   
Sbjct: 168 GLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAAREL 227

Query: 147 ---------------LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
                          +++ +++   V+VAR+ FD M ++  ++W++MI GY Q G   EA
Sbjct: 228 FEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEA 287

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           + +F+ M+   + P       VL+ACA LG +D GRW+H +     + ++ VL TSL++M
Sbjct: 288 LEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDM 347

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           YA+CG +  A E+F+ MS   V +W AMI G  MHG   +A++LF +M    + PN +TF
Sbjct: 348 YAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITF 404

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           V VL+ACAH GLVQ+G  +F SMR+EYG+ P +EH+ C+VDL GRAGLL EA K V  + 
Sbjct: 405 VGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIP 464

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
            E P PAVW A+LGAC+ H N +LG  V + LL +EP+N G Y +LSNIYA AGR + V 
Sbjct: 465 TE-PTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVG 523

Query: 432 VVRNIMIQKGLKKHVGYSTVEVDQKN-YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
            VR +M ++G+K   G S +++ +   + F +GD SHP   +IYQ LD++  R +  GY 
Sbjct: 524 EVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYE 583

Query: 491 PESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFI 550
           P+    + +++EEE+E ++  HSEKLA+ FGL+ TSPG TIRIVKNLR+C DCHSA K I
Sbjct: 584 PDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLI 643

Query: 551 SVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S   NREIIVRDR+R+HHF+ G+CSC D+W
Sbjct: 644 SQVYNREIIVRDRIRYHHFRNGACSCKDFW 673


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/515 (42%), Positives = 326/515 (63%), Gaps = 32/515 (6%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M+   + P+ +T S V+K+CA ++ L  G+  H ++   G++SD+ VQ ALV+ YA+  +
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 157 VDVARKVFDRMPDKS-------------------------------VVAWNSMISGYEQN 185
           ++ A  VFD+M ++S                               VV+W ++I+GY QN
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G+  E++ +FN MR  G+  D      VL+ACA L  ++LGR  H ++V  G  +++V+ 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           ++L++MYA+ G++  A ++FD M + N ++W ++I+G   HG G +AV LF +M   G++
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           PN ++FV VLSAC+H GLV EG   F  M Q YG++P V H+ CM+DL GRAG L+EA  
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
           F+  +  E P  +VW A+LGAC++H N +L   +AEHLL +E +  G YV+LSNIYA AG
Sbjct: 301 FINGMPVE-PDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAG 359

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
           + D    VR +M  +G+ K  GYS +EV    + F  G+ SHP   EI+++L+ L  + +
Sbjct: 360 QWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMK 419

Query: 486 EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
            AGYVP     + ++E++E+E SL +HSEKLA+AFG++ T+PG TIR+ KNLR+C DCH+
Sbjct: 420 AAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHT 479

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            IKFIS+   R+I+VRD  RFHHFK G CSC DYW
Sbjct: 480 VIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 132/246 (53%), Gaps = 6/246 (2%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A ++F+ +   D   +  +I   ++  +  +SL  + +M  + +    +   +V+ +CA 
Sbjct: 95  ALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACAD 154

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L+ L LGR  H +V  SG+  D+ V +ALV+ YAKS +++ A +VFD+MP ++ V+WNS+
Sbjct: 155 LAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSI 214

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-G 237
           I+G  Q+G   +A+ LF  M   G+ P+  + V VL+AC+  G ++ GR     +    G
Sbjct: 215 ITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYG 274

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELF 296
           +  +V   T +I++  R G + +A    + M  E +V  W A++    +HG      EL 
Sbjct: 275 IVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHG----NTELA 330

Query: 297 HRMRAH 302
            R+  H
Sbjct: 331 KRIAEH 336



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 134/314 (42%), Gaps = 53/314 (16%)

Query: 13  AILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           ++L A   L  L+   Q HA+++ +G+     + + L+ +   +G +  A ++F  +P  
Sbjct: 147 SVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQR 206

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           +   +N++I   ++     D++L + +M+ + I P+  +F  V+ +C+H  ++N GR   
Sbjct: 207 NEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGR--- 263

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
                 GY            F   + N  +       +PD  V  +  MI    + G   
Sbjct: 264 ------GY------------FNLMTQNYGI-------VPD--VSHYTCMIDLLGRAGCLD 296

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           EA    N M    V PD +    +L AC   G+ +L + + E ++G  + +  +    L 
Sbjct: 297 EAENFINGMP---VEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVL-LS 352

Query: 250 NMYARCGNVSKAREIFDMMSELNVI-----AWT-------AMISGYGMHGYGTEAVE--- 294
           N+YA  G    A ++  +M +  V+     +W        A ++G   H    E  E   
Sbjct: 353 NIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLE 412

Query: 295 -LFHRMRAHGVRPN 307
            L  +M+A G  PN
Sbjct: 413 SLSRKMKAAGYVPN 426


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/567 (42%), Positives = 347/567 (61%), Gaps = 13/567 (2%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC------IPSPDSFLFNTLII 79
           Q+H+ ++  G   +  +LTK  +       + YA  + F        PS D+FLFNTLI 
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199

Query: 80  RNSKANFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
             ++   S   +L FY  M    +SP+ +TF  V+K+CA +  L LG AVH  +   G++
Sbjct: 200 AFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFE 259

Query: 139 SDLHVQAALVNFYA-----KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            D HV+  LV+ Y       S+    A+KVFD  P K  V W++MI GY + G +  A+ 
Sbjct: 260 EDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVT 319

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           LF  M+  GV PD  T V VL+ACA LG ++LG+W+  +I  + +  +V L  +LI+M+A
Sbjct: 320 LFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDMFA 379

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +CG+V +A ++F  M    +++WT+MI G  MHG G EAV +F  M   GV P++V F+ 
Sbjct: 380 KCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIG 439

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           VLSAC+H+GLV +GH  F +M   + ++P +EH+ CMVD+  RAG +NEA +FV+ +  E
Sbjct: 440 VLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVE 499

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVV 433
            P   +W +++ AC       LG  VA+ L+  EP +  +YV+LSNIYA   R ++   V
Sbjct: 500 -PNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKTKV 558

Query: 434 RNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPES 493
           R +M  KG++K  G + +E++ + Y F  GDKSH    EIY+ ++E+    + AGYVP +
Sbjct: 559 REMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYVPTT 618

Query: 494 ESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVA 553
              + +++EE++E +L  HSEKLA+AF L+ T PG  IRIVKNLR+C DCHSA KFIS  
Sbjct: 619 SQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFISKV 678

Query: 554 TNREIIVRDRLRFHHFKRGSCSCLDYW 580
            NREI+VRDR RFHHFK G CSC D+W
Sbjct: 679 YNREIVVRDRNRFHHFKNGLCSCGDFW 705


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 247/606 (40%), Positives = 358/606 (59%), Gaps = 40/606 (6%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPD 70
           ++L     +  ++QVHAH+   G  +   +L KLL  +   D     Y + +F  +  P+
Sbjct: 44  SVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPN 103

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
            FL+  LI   +      +S+L Y  M    I P ++TF+A++K+C+    +NLGR VH 
Sbjct: 104 PFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHT 163

Query: 131 H-VFVSGYDSDLHVQAALVNFY-------------------------------AKSNNVD 158
             + + G+ SDL+V   L++ Y                               AK  N++
Sbjct: 164 QTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNME 223

Query: 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
            A ++FD +P K +VAW +M++GY QN   +EA+ +F  M+  GV  D  T V V++ACA
Sbjct: 224 AASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACA 283

Query: 219 QLGDIDLGRWVHEFI--VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           QLG      WV +     G G   NVV+ ++LI+MYA+CG+V  A ++F+ M E NV ++
Sbjct: 284 QLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSY 343

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           ++MI G+ MHG    A+ELF  M    ++PN VTF+ VL+AC+HAG+V++G ++FA M +
Sbjct: 344 SSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEE 403

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
            +G+ P  +H+ CMVDL GRAG L EA   VK ++   P   VW A+LGAC++H N D+ 
Sbjct: 404 CHGVAPSEDHYACMVDLLGRAGRLEEALNLVK-MMPMNPHGGVWGALLGACRIHGNPDMA 462

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQK 456
              A HL  +EP   G+Y++LSNIYA AGR D V  VR +M  KGLKK+ G S VE  +K
Sbjct: 463 QIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVE-GKK 521

Query: 457 NYL--FSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSE 514
             +  F  GD SHP + EI Q L++L+ R +  GY P   S  +++ +EE++  L  HSE
Sbjct: 522 GIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSE 581

Query: 515 KLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSC 574
           KLALAFGL+ T+ G TIRIVKNLR+C DCHS +   S  T REI+VRD +RFHHF+ G C
Sbjct: 582 KLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRC 641

Query: 575 SCLDYW 580
           SC ++W
Sbjct: 642 SCGNFW 647



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 7/195 (3%)

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA--REIFDMM 268
           V VL  C  +  +   + VH  I  +GL+    +   L+    +         R +F  +
Sbjct: 43  VSVLHGCTHINQV---KQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQV 99

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
              N   WTA+I GY + G   E+V L++ MR  G+ P + TF A+L AC+ A  V  G 
Sbjct: 100 EYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGR 159

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
           +V        G    +     ++D++ + G L   ++   +++        WT+++ A  
Sbjct: 160 QVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVIS--WTSLIVAYA 217

Query: 389 MHKNFDLGVEVAEHL 403
              N +   E+ + L
Sbjct: 218 KVGNMEAASELFDGL 232


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/556 (39%), Positives = 345/556 (62%), Gaps = 1/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H+ +  AG+     +   L+S+    G I  A+ +F  +   D   +  +I   +K+
Sbjct: 348 KEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKS 407

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            F  ++L  Y+ M  + + P+  T+++++ +C+  + L  GR +H  V  +G  +D HV 
Sbjct: 408 GFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVG 467

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             LVN Y+   +V  AR+VFDRM  + +VA+N+MI GY  +   KEA+ LF+ +++ G+ 
Sbjct: 468 NTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLK 527

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD  T + +L ACA  G ++  R +H  +   G   +  +  +L++ YA+CG+ S A  +
Sbjct: 528 PDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIV 587

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ M++ NVI+W A+I G   HG G +A++LF RM+  GV+P+ VTFV++LSAC+HAGL+
Sbjct: 588 FEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLL 647

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           +EG R F SM Q++ ++P +EH+ CMVDL GRAG L+EA   +K  +  +    +W A+L
Sbjct: 648 EEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIK-TMPFQANTRIWGALL 706

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GAC++H N  +    AE  L ++ +N   YV LS++YA AG  D    +R +M Q+G+ K
Sbjct: 707 GACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTK 766

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S ++V  K + F   D+SHP + +IY  LD L    +  GYVP++ S MH+++E E
Sbjct: 767 EPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGE 826

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E ++ +HSE+LA+A+GL+ T PG  I I KNLR+C DCH+A KFIS   +REII RD  
Sbjct: 827 KENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVN 886

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHFK G CSC DYW
Sbjct: 887 RFHHFKDGVCSCGDYW 902



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 212/388 (54%), Gaps = 6/388 (1%)

Query: 6   PHSPAYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   Y ++L A      LK  + VH+ ++ AG+    ++ T L+ +    G     +++
Sbjct: 225 PNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQV 284

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  + + D   +NT+I   ++  +  ++   Y +M    + P+  T+  ++ +C + + L
Sbjct: 285 FEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAAL 344

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           + G+ +H  V  +G+ SD+ VQ AL++ Y++  ++  AR VFD+M  K V++W +MI G 
Sbjct: 345 HWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGL 404

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            ++GF  EA+ ++  M+  GV P+  T   +L AC+    ++ GR +H+ +V  GL  + 
Sbjct: 405 AKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDA 464

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +  +L+NMY+ CG+V  AR++FD M + +++A+ AMI GY  H  G EA++LF R++  
Sbjct: 465 HVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 524

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G++P+ VT++ +L+ACA++G ++    +   +R+  G          +V  + + G  ++
Sbjct: 525 GLKPDKVTYINMLNACANSGSLEWAREIHTLVRKG-GFFSDTSVGNALVSTYAKCGSFSD 583

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           A    + +   K     W A++G    H
Sbjct: 584 ASIVFEKMT--KRNVISWNAIIGGSAQH 609



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 212/422 (50%), Gaps = 10/422 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H   + AG      +   +L++    G I  A+ +F  +       +   I   +  
Sbjct: 146 REIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADC 205

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             S  +   +++M    + P+  T+ +V+ + +  + L  G+AVH  +  +G++SD  V 
Sbjct: 206 GRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVG 265

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            ALV  YAK  +    R+VF+++ ++ ++AWN+MI G  + G+ +EA  ++N M+  GV 
Sbjct: 266 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVM 325

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T V +L AC     +  G+ +H  +   G   ++ +  +LI+MY+RCG++  AR +
Sbjct: 326 PNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLV 385

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD M   +VI+WTAMI G    G+G EA+ ++  M+  GV PN VT+ ++L+AC+    +
Sbjct: 386 FDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAAL 445

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           + G R+   +  E GL         +V+++   G + +A +    +I  +     + AM+
Sbjct: 446 EWGRRIHQQV-VEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMI--QRDIVAYNAMI 502

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPE----NPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
           G    H   +LG E  +    ++ E    +   Y+ + N  A +G ++    +  ++ + 
Sbjct: 503 GGYAAH---NLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKG 559

Query: 441 GL 442
           G 
Sbjct: 560 GF 561



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 122/480 (25%), Positives = 224/480 (46%), Gaps = 40/480 (8%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           +  Q +S  Y  +LK    +K L   +QVH H+I       +  +  L+++    G I  
Sbjct: 17  QGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEE 76

Query: 59  AQRIFFCIPSPDSFL--FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC 116
           A++++  +   +  +  +N +++   +  +   +L   R+M    ++P   T  + + SC
Sbjct: 77  ARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSC 136

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
                L  GR +H     +G   D+ V   ++N YAK  +++ AR+VFD+M  KSVV+W 
Sbjct: 137 KSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWT 196

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
             I GY   G ++ A  +F  M   GV P+  T + VL A +    +  G+ VH  I+  
Sbjct: 197 ITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNA 256

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
           G + +  + T+L+ MYA+CG+    R++F+ +   ++IAW  MI G    GY  EA E++
Sbjct: 257 GHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVY 316

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
           ++M+  GV PN +T+V +L+AC ++  +  G  + + + +  G    +     ++ ++ R
Sbjct: 317 NQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKA-GFTSDIGVQNALISMYSR 375

Query: 357 AGLLNEAY----KFV-KDVI----------------------------GEKPAPAVWTAM 383
            G + +A     K V KDVI                            G +P    +T++
Sbjct: 376 CGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSI 435

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYV-MLSNIYALAGRMDRVEVVRNIMIQKGL 442
           L AC      + G  + + ++        H    L N+Y++ G +     V + MIQ+ +
Sbjct: 436 LNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDI 495



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 158/328 (48%), Gaps = 27/328 (8%)

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ +   ++  G   +S+  + +L  C ++ D+  GR VH+ I+      +     +LIN
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 251 MYARCGNVSKAREIFDMMS--ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           MY +CG++ +AR+++  +S  E  V +W AM+ GY  +GY  +A++L  +M+ HG+ P+ 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 309 VTFVAVLSACAHAGLVQEGHRV-FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            T ++ LS+C   G ++ G  + F +M  + GLL  V+   C+++++ + G + EA +  
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAM--QAGLLFDVKVANCILNMYAKCGSIEEAREVF 184

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLSNIYALAG 425
             +  EK +   WT  +G        +   E+ + +    V P N   Y+ + N ++   
Sbjct: 185 DKM--EKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVP-NRITYISVLNAFSSPA 241

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK--SHPNTNEIYQYL------ 477
            +   + V + ++  G +      T        L  M  K  S+ +  ++++ L      
Sbjct: 242 ALKWGKAVHSRILNAGHESDTAVGTA-------LVKMYAKCGSYKDCRQVFEKLVNRDLI 294

Query: 478 --DELMGRCREAGYVPESESAMHELEEE 503
             + ++G   E GY  E+    ++++ E
Sbjct: 295 AWNTMIGGLAEGGYWEEASEVYNQMQRE 322


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/598 (41%), Positives = 347/598 (58%), Gaps = 39/598 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK L+ VHA L+  G      +L K+L    + G   Y+ RIF     P+ FLFNT+I  
Sbjct: 23  LKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHG 82

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
               +   +S+  Y  M    +SP ++TF  ++K+CA L    LG  +H  V  +G +SD
Sbjct: 83  LVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESD 142

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSV---------------------------- 172
             V  +LV+ Y K   +D A KVFD +P+K+V                            
Sbjct: 143 AFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACS 202

Query: 173 ----------VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
                     V+W+SMI GY  NG  KEA+ LF  M + G  PD    V VL ACA+LG 
Sbjct: 203 VFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGA 262

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           ++LG W    +       N VL T+LI+MYA+CG +  A E+F  M + +++ W A ISG
Sbjct: 263 LELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISG 322

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
             M G+   A  LF +M   G+ P+  TFV +L AC HAGLV EG + F SM + + L P
Sbjct: 323 LAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTP 382

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
            +EH+ CMVDL GRAG L+EA++ VK +  E  A  VW A+LG C++H++  L   V + 
Sbjct: 383 EIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANA-IVWGALLGGCRLHRDTQLVEGVLKQ 441

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
           L+++EP N G+YV+LSNIY+ + + +    +R+IM ++G+KK  GYS +EVD   + F +
Sbjct: 442 LIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLV 501

Query: 463 GDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGL 522
           GD SHP + +IY  L EL+   + +GYVP ++  + ++EEEE+E+ +  HSEKLA+AFGL
Sbjct: 502 GDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGL 561

Query: 523 MRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           + T+P   IR+VKNLR+C DCH AIK IS  T REIIVRD  RFH F  GSCSC DYW
Sbjct: 562 ISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 154/327 (47%), Gaps = 51/327 (15%)

Query: 110 SAVIKSCAHLSI--------LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           S ++   AH+ I        L   + VH  +   G D D ++   ++ F     N + + 
Sbjct: 3   SLILNKSAHIKIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSH 62

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           ++F +  + ++  +N+MI G   N   +E+I +++ MR  G++PDS T   +L ACA+L 
Sbjct: 63  RIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLL 122

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           D  LG  +H  +V  G + +  + TSL+++Y +CG +  A ++FD + E NV AWTA+IS
Sbjct: 123 DSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIIS 182

Query: 282 GY---------------------GM------------HGYGT-----EAVELFHRMRAHG 303
           GY                     GM             GY +     EA++LF +M   G
Sbjct: 183 GYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEG 242

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
            RP+    V VL ACA  G ++ G+     M R E+   P +     ++D++ + G ++ 
Sbjct: 243 FRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVL--GTALIDMYAKCGRMDS 300

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKM 389
           A++  + +   K    VW A +    M
Sbjct: 301 AWEVFRGM--RKKDIVVWNAAISGLAM 325


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/592 (39%), Positives = 344/592 (58%), Gaps = 37/592 (6%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H+H+   G      +   L+++ C    I  A+  F  +   D   ++ +I   +++
Sbjct: 300 RRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQS 359

Query: 85  NFSTDSLL-----FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
            +     L        RM    + P+  TF +++K+C+    L  GR +H  +   G++S
Sbjct: 360 GYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFES 419

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW------------------------ 175
           D  +Q A+ N YAK  ++  A +VF +M +K+VVAW                        
Sbjct: 420 DRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMS 479

Query: 176 -------NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
                  N MI+GY Q+G   +   L + M+  G  PD  T + +L AC  L  ++ G+ 
Sbjct: 480 TRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKL 539

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           VH   V  GL+ + V+ATSLI MY++CG V++AR +FD +S  + +AW AM++GYG HG 
Sbjct: 540 VHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGI 599

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
           G EAV+LF RM    V PN +TF AV+SAC  AGLVQEG  +F  M++++ + PG +H+ 
Sbjct: 600 GPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYG 659

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
           CMVDL GRAG L EA +F++ +  E P  +VW A+LGACK H N  L    A H+L +EP
Sbjct: 660 CMVDLLGRAGRLQEAEEFIQRMPCE-PDISVWHALLGACKSHDNVQLAEWAAHHILRLEP 718

Query: 409 ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHP 468
            N   YV LSNIYA AGR D    VR +M  KGLKK  G S++E+D + + F   D +HP
Sbjct: 719 SNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHP 778

Query: 469 NTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPG 528
             + I+  L+ L    +EAGY P+    +H+++E ++E +L +HSEKLA+A+GL++T PG
Sbjct: 779 EIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPG 838

Query: 529 MTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             IRI+KNLR+C DCH+A KFIS    REI+ RD  RFH+FK G+CSC D+W
Sbjct: 839 TPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 201/386 (52%), Gaps = 11/386 (2%)

Query: 7   HSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF 63
           +S  Y  I++   +L+  +    VH  L   G      +   L++     G +   +++F
Sbjct: 77  NSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVF 136

Query: 64  FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123
             +   D   ++++I   +  N    +   + RM  +NI P+  TF +++K+C + S+L 
Sbjct: 137 RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLE 196

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
             R +H  V  SG ++D+ V  AL+  Y+K   + +A ++F +M +++VV+W ++I    
Sbjct: 197 KAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANA 256

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           Q+    EA  L+  M   G++P++ T V +L +C     ++ GR +H  I  +GL+ +VV
Sbjct: 257 QHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVV 316

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG-----TEAVELFHR 298
           +A +LI MY +C  +  ARE FD MS+ +VI+W+AMI+GY   GY       E  +L  R
Sbjct: 317 VANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLER 376

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           MR  GV PN VTF+++L AC+  G +++G ++ A +  + G          + +++ + G
Sbjct: 377 MRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEI-SKVGFESDRSLQTAIFNMYAKCG 435

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAML 384
            + EA +    +  E      W ++L
Sbjct: 436 SIYEAEQVFSKM--ENKNVVAWASLL 459



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 223/473 (47%), Gaps = 44/473 (9%)

Query: 3   NKQPHSPAYEAILKAG---PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           N +P+   + +ILKA      L+  +++H  +  +G     ++ T L+++    G I+ A
Sbjct: 174 NIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLA 233

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
             IF  +   +   +  +I  N++     ++   Y +M+ + ISP+  TF +++ SC   
Sbjct: 234 CEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTP 293

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             LN GR +H H+   G ++D+ V  AL+  Y K N +  AR+ FDRM  + V++W++MI
Sbjct: 294 EALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMI 353

Query: 180 SGYEQNGFAK-----EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           +GY Q+G+       E   L   MR  GV P+  T + +L AC+  G ++ GR +H  I 
Sbjct: 354 AGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEIS 413

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA---------------- 278
             G + +  L T++ NMYA+CG++ +A ++F  M   NV+AW +                
Sbjct: 414 KVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEK 473

Query: 279 ---------------MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
                          MI+GY   G   +  EL   M+  G +P+ VT +++L AC     
Sbjct: 474 VFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSA 533

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           ++ G  V A   +  GL         ++ ++ + G + EA + V D I  +   A W AM
Sbjct: 534 LERGKLVHAEAVK-LGLESDTVVATSLIGMYSKCGEVTEA-RTVFDKISNRDTVA-WNAM 590

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
           L     H      V++ + +L  +   P + +  + + +  GR   V+  R I
Sbjct: 591 LAGYGQHGIGPEAVDLFKRML--KERVPPNEITFTAVISACGRAGLVQEGREI 641



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 139/263 (52%), Gaps = 6/263 (2%)

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G  KEAI L  +++  G+  +S T  C++  CA+L   + G+ VH+ +   GL +++ L 
Sbjct: 57  GRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLG 116

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
            SLIN Y++ G+V+   ++F  M+  +V+ W++MI+ Y  + +  +A + F RM+   + 
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE 176

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           PN +TF+++L AC +  ++++   +   ++   G+   V     ++ ++ + G ++ A +
Sbjct: 177 PNRITFLSILKACNNYSMLEKAREIHTVVKAS-GMETDVAVATALITMYSKCGEISLACE 235

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLSNIYAL 423
             + +  ++     WTA++ A   H+  +   E+ E +L   + P N   +V L N    
Sbjct: 236 IFQKM--KERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISP-NAVTFVSLLNSCNT 292

Query: 424 AGRMDRVEVVRNIMIQKGLKKHV 446
              ++R   + + + ++GL+  V
Sbjct: 293 PEALNRGRRIHSHISERGLETDV 315



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 106/270 (39%), Gaps = 44/270 (16%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP      +IL+A   L  L++   VHA  +  G      + T L+ +    G +T A+ 
Sbjct: 515 QPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEART 574

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  I + D+  +N ++    +     +++  ++RM+   + P+  TF+AVI +C    +
Sbjct: 575 VFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGL 634

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQ--AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
           +  GR +   +    +      Q    +V+   ++  +  A +   RMP           
Sbjct: 635 VQEGREIF-RIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMP----------- 682

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
                                    PD +    +L AC    ++ L  W    I+ +   
Sbjct: 683 -----------------------CEPDISVWHALLGACKSHDNVQLAEWAAHHIL-RLEP 718

Query: 240 VNVVLATSLINMYARCG---NVSKAREIFD 266
            N  +  +L N+YA+ G   + +K R++ D
Sbjct: 719 SNASVYVTLSNIYAQAGRWDDSTKVRKVMD 748


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/594 (40%), Positives = 356/594 (59%), Gaps = 38/594 (6%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           ++QVHAH+I  G  +   +LTKL+ ++   D    +Y   +F  +  P+ FL+  +I   
Sbjct: 58  IKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGY 117

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH-VFVSGYDSD 140
           +     ++S  FY RM    + P ++TFSA+ K+C     ++LG+ VH   + + G+ SD
Sbjct: 118 ALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASD 177

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRM-------------------------------PD 169
           L+V  ++++ Y K   +  ARKVFD M                               P 
Sbjct: 178 LYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPL 237

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           K +VAW +M++GY QNG  KEA+  F  M+D G+  D  T   V++ACAQLG +    W+
Sbjct: 238 KDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWI 297

Query: 230 HEFI--VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +     G G   NVV+ ++LI+MY++CG+  +A ++F++M E NV ++++MI GY MHG
Sbjct: 298 RDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG 357

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
               A++LFH M    +RPN VTF+ +LSAC+HAGLV++G ++FA M + +G+ P  +H+
Sbjct: 358 RAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHY 417

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
            CMVDL GRAG L EA   VK +  E P   VW A+LGAC++H N D+    A  L  +E
Sbjct: 418 ACMVDLLGRAGCLEEALDLVKTMPME-PNGGVWGALLGACRIHGNPDIAQIAANELFKLE 476

Query: 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVE-VDQKNYLFSMGDKS 466
           P   G+Y++LSNIYA AGR + V  +R ++ +KG KK+ G S  E  + + + F  GD +
Sbjct: 477 PNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTT 536

Query: 467 HPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTS 526
           HP ++EI Q L +L+ R R  GY P   SA ++L ++E+E  L  HSEKLALA+GL+ T 
Sbjct: 537 HPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTE 596

Query: 527 PGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            G TI+I+KN+R+C DCH+ +   S  T REIIVRD +RFHHF  G+CSC ++W
Sbjct: 597 AGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/568 (41%), Positives = 355/568 (62%), Gaps = 10/568 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTK-----LLSLVCDAGFITYAQRIFFCIPSP-DSFLF 74
           L  L+Q+HA  I  G   S + L K     L+SL      ++YA ++F  I  P + F++
Sbjct: 30  LTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPP-MSYAHKVFSKIEKPINVFIW 88

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           NTLI   ++   S  ++  YR M  S  + P  +T+  ++K+   ++ + LG  +H  V 
Sbjct: 89  NTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVI 148

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            SG+ S ++VQ +L++ YA   +V  A KVFD+MP+K +VAWNS+I+G+ +NG  +EA+ 
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALA 208

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           L+  M   G+ PD  T V +L+ACA++G + LG+  H +++  GL  N+  +  L+++YA
Sbjct: 209 LYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYA 268

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA-HGVRPNNVTFV 312
           RCG V +A+ +FD M + N ++WT++I G  ++G G EA+ELF  M +  G+ P  +TFV
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFV 328

Query: 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372
            +L AC+H G+V+EG   F  M +EY + P +EH  CMVDL  RAG + +AY+++   + 
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILK-MP 387

Query: 373 EKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432
            +P   +W  +LGAC +H + DL       +L +EP + G YV+LSN+YA   R   V+ 
Sbjct: 388 MQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQK 447

Query: 433 VRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPE 492
           +R  M++ G++K  G+S VEV  + + F MGDKSHP  + IY  L E+  R R  GYVP+
Sbjct: 448 IRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQ 507

Query: 493 SESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISV 552
             +   ++EEEE+E +L YHSEK+A+AF L+ T     IR+VKNL++C DCH AIK +S 
Sbjct: 508 ISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSK 567

Query: 553 ATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             NREI+VRDR RFHHFK GSCSC DYW
Sbjct: 568 VYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/556 (39%), Positives = 347/556 (62%), Gaps = 1/556 (0%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            +++H+ ++  G+    S+   L+S+    G I  A+ +F  +   D   +  +I   +K+
Sbjct: 466  REIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKS 525

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
                ++L  ++ M  + + P+  T+++++ +C+  + L+ GR +H  V  +G  +D HV 
Sbjct: 526  GLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVA 585

Query: 145  AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
              LVN Y+   +V  AR+VFDRM  + +VA+N+MI GY  +   KEA+ LF+ +++ G+ 
Sbjct: 586  NTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLK 645

Query: 205  PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            PD  T + +L ACA  G ++  + +H  ++  G   +  L  +L++ YA+CG+ S A  +
Sbjct: 646  PDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLV 705

Query: 265  FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
            FD M + NVI+W A+I G   HG G + ++LF RM+  G++P+ VTFV++LSAC+HAGL+
Sbjct: 706  FDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLL 765

Query: 325  QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            +EG R F SM +++G+ P +EH+ CMVDL GRAG L+E    +K  +  +    +W A+L
Sbjct: 766  EEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIK-TMPFQANTRIWGALL 824

Query: 385  GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            GAC++H N  +    AE  L ++P+N   YV LS++YA AG  D    +R +M Q+G+ K
Sbjct: 825  GACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTK 884

Query: 445  HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
              G S +EV  K + F   D+SHP + +IY  LD+L    +  GYVP++ S MH+++E E
Sbjct: 885  EPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGE 944

Query: 505  REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
            +E ++ +HSE+LA+A+GL+ T PG  IRI KNLR+C DCH+A KFI+   +REI+ RD  
Sbjct: 945  KENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVN 1004

Query: 565  RFHHFKRGSCSCLDYW 580
            RFHHFK G CSC DYW
Sbjct: 1005 RFHHFKDGVCSCGDYW 1020



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 215/388 (55%), Gaps = 6/388 (1%)

Query: 6   PHSPAYEAILKA--GPR-LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   Y  +L A  GP  LK  + VH+H++ AG+    ++ T L+ +    G     +++
Sbjct: 343 PNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQV 402

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  + + D   +NT+I   ++     ++   Y +M    + P+  T+  ++ +C + + L
Sbjct: 403 FEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTAL 462

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           + GR +H  V   G+  D+ VQ AL++ YA+  ++  AR +F++M  K +++W +MI G 
Sbjct: 463 HWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGL 522

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            ++G   EA+ +F  M+  G+ P+  T   +L AC+    +D GR +H+ ++  GL  + 
Sbjct: 523 AKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDA 582

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +A +L+NMY+ CG+V  AR++FD M++ +++A+ AMI GY  H  G EA++LF R++  
Sbjct: 583 HVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 642

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G++P+ VT++ +L+ACA++G ++    + + + ++ G L        +V  + + G  ++
Sbjct: 643 GLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKD-GYLSDTSLGNALVSTYAKCGSFSD 701

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           A      ++  K     W A++G C  H
Sbjct: 702 ALLVFDKMM--KRNVISWNAIIGGCAQH 727



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 211/400 (52%), Gaps = 10/400 (2%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           +L++    G I  A+ +F  + +     +  +I   +    S  +   +++M    + P+
Sbjct: 285 ILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPN 344

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
             T+  V+ + +  + L  G+ VH H+  +G++SDL V  ALV  YAK  +    R+VF+
Sbjct: 345 RITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFE 404

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           ++ ++ ++AWN+MI G  + G  +EA  +++ M+  G+ P+  T V +L AC     +  
Sbjct: 405 KLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHW 464

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           GR +H  +V  G   ++ +  +LI+MYARCG++  AR +F+ M   ++I+WTAMI G   
Sbjct: 465 GREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAK 524

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
            G G EA+ +F  M+  G++PN VT+ ++L+AC+    +  G R+   +  E GL     
Sbjct: 525 SGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQV-IEAGLATDAH 583

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
               +V+++   G + +A + V D + ++   A + AM+G    H   +LG E  +    
Sbjct: 584 VANTLVNMYSMCGSVKDARQ-VFDRMTQRDIVA-YNAMIGGYAAH---NLGKEALKLFDR 638

Query: 406 VEPE----NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
           ++ E    +   Y+ + N  A +G ++  + + +++++ G
Sbjct: 639 LQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDG 678



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 223/475 (46%), Gaps = 40/475 (8%)

Query: 7   HSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF 63
           +S  Y  +LK    +K L   ++VH H+I       +  +  L+++    G I  A++++
Sbjct: 140 NSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVW 199

Query: 64  FCIPSPDSFL--FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
             +   +  +  +N +++   +  +  ++L   R M    ++    T   ++ SC   S 
Sbjct: 200 NKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSA 259

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  GR +H     +    D++V   ++N YAK  ++  AR+VFD+M  KSVV+W  +I G
Sbjct: 260 LECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGG 319

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y   G ++ A  +F  M+  GV P+  T + VL A +    +  G+ VH  I+  G + +
Sbjct: 320 YADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESD 379

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + + T+L+ MYA+CG+    R++F+ +   ++IAW  MI G    G   EA E++H+M+ 
Sbjct: 380 LAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQR 439

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ PN +T+V +L+AC +   +  G  + + + ++ G +  +     ++ ++ R G + 
Sbjct: 440 EGMMPNKITYVILLNACVNPTALHWGREIHSRVVKD-GFMFDISVQNALISMYARCGSIK 498

Query: 362 EAY----KFV-KDVI----------------------------GEKPAPAVWTAMLGACK 388
           +A     K V KD+I                            G KP    +T++L AC 
Sbjct: 499 DARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACS 558

Query: 389 MHKNFDLGVEVAEHLLSVEPENPGHYV-MLSNIYALAGRMDRVEVVRNIMIQKGL 442
                D G  + + ++        H    L N+Y++ G +     V + M Q+ +
Sbjct: 559 SPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDI 613



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 153/327 (46%), Gaps = 25/327 (7%)

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ +   ++  G   +S   + +L  C ++ D+  GR VHE I+     ++     +LIN
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 251 MYARCGNVSKAREIFDMM--SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           MY +CG++ +AR++++ +  +E  V +W AM+ GY  +GY  EA++L   M+ HG+    
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
            T + +LS+C     ++ G  +     +   LL  V    C+++++ + G ++EA +   
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKAR-LLFDVNVANCILNMYAKCGSIHEAREVFD 303

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLSNIYALAGR 426
            +  E  +   WT ++G      + ++  E+ + +    V P N   Y+ + N ++    
Sbjct: 304 KM--ETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVP-NRITYINVLNAFSGPAA 360

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK--SHPNTNEIYQYL------- 477
           +   + V + ++  G +  +   T        L  M  K  S+ +  ++++ L       
Sbjct: 361 LKWGKTVHSHILNAGHESDLAVGTA-------LVKMYAKCGSYKDCRQVFEKLVNRDLIA 413

Query: 478 -DELMGRCREAGYVPESESAMHELEEE 503
            + ++G   E G   E+    H+++ E
Sbjct: 414 WNTMIGGLAEGGNWEEASEIYHQMQRE 440


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/608 (39%), Positives = 359/608 (59%), Gaps = 34/608 (5%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCD-AGFITYAQRIFF 64
           P +P   ++      L+ L+QVHA +I       +      LS +     F+ YA+ IF 
Sbjct: 65  PSNPQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPFPTFLAYAKTIFH 124

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            + +P   L+N+LI   S +    ++L  Y  M+ S + P + T+  VIK+C   S+   
Sbjct: 125 HLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWF 184

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV-------------DV------------ 159
           G  VH HV  SG++ D ++ ++L++ YA   ++             DV            
Sbjct: 185 GLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVK 244

Query: 160 ------ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
                 AR VFDRM  + V++WN+MI+GY   G   EA+ LF+ MR  GV P   T V +
Sbjct: 245 HVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSL 304

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           L+ACA LG +D G  +H +I    ++VN ++ T+L++MYA+CG +S A ++F+ M   +V
Sbjct: 305 LSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDV 364

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
           +AW  +I+G  +HG   EA +LF  M+  GV PN++TFVA+LSAC+HAG+V EG ++   
Sbjct: 365 LAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDC 424

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
           M   YG+ P VEH+ C++DL  RAG L EA + +  +  E P P+   A+LG C++H NF
Sbjct: 425 MSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPME-PNPSALGALLGGCRIHGNF 483

Query: 394 DLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEV 453
           +LG  V + L++++P + G Y++LSNIYA A + D    VRN+M   G+ K  G S +E+
Sbjct: 484 ELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIEL 543

Query: 454 DQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA-GYVPESESAMHELEEEEREYSLRYH 512
               + F  GD SHP +N+IY+ L+E+  R + A GY  ++ + + ++EEE++E++L  H
Sbjct: 544 KGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVH 603

Query: 513 SEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRG 572
           SEKLA+A+GL+       IRIVKNLR+C DCH  IK IS    REIIVRDR RFHHF+ G
Sbjct: 604 SEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDG 663

Query: 573 SCSCLDYW 580
            CSCLD+W
Sbjct: 664 ECSCLDFW 671


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/527 (40%), Positives = 337/527 (63%), Gaps = 1/527 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G + YA  IF C   P+ F++NT+I   S ++    ++  Y+ M +  ISP++YTF  V+
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
            +C  L  L  G+ +H  +  +G D +  +   L+  YA    +D A  +FD MP+    
Sbjct: 75  NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSA 134

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           +W++M+SGY QNG A E + L   M+   V+ D+ T   V+  C  LG +DLG+WVH +I
Sbjct: 135 SWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYI 194

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
             +G+ ++VVL T+L+ MY++CG++  A ++F  M+E +V  W+ MI+GY +HG+  +A+
Sbjct: 195 DKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKAL 254

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           +LF  M+   + PN VTF +VLSA +H+GLV++GH++F +M  EY + P ++H+ CMVDL
Sbjct: 255 QLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDL 314

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
           F RAG++  A+KF++ +  E P   +W  +LGACK H    LG  ++  +L ++P +P +
Sbjct: 315 FCRAGMVGHAHKFIQTMPIE-PNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPEN 373

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV +SN+YA  GR   V  VR++M +K  KK  G+S++E++   + F MG++SHP   +I
Sbjct: 374 YVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKREKI 433

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           Y  L ++  + ++ G+V  +   +H+++EEE+EY+L  HSE+LA+A+GL+ T  G  IRI
Sbjct: 434 YGMLHQMARKLKQVGHVASTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRI 493

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           VKNLR C DCH  IK IS   NREII+RDR+ FHHF+   CSC DYW
Sbjct: 494 VKNLRACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCSCNDYW 540



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 157/314 (50%), Gaps = 6/314 (1%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+S  +  +L A  +L  L   Q++H+ ++ AG      +L  L+ L    G + YA  +
Sbjct: 65  PNSYTFGFVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVM 124

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P PDS  ++T++   S+   + ++L   R M   N+S   +T ++V+  C  L +L
Sbjct: 125 FDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVL 184

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           +LG+ VH ++   G   D+ +  ALV  Y+K  ++D A KVF  M ++ V  W+ MI+GY
Sbjct: 185 DLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGY 244

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVN 241
             +G  ++A+ LF+ M+   + P+  T   VL+A +  G ++ G  + E +  +  +   
Sbjct: 245 AIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQ 304

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHR-M 299
           +     +++++ R G V  A +    M  E NV+ W  ++     HGY      +  + +
Sbjct: 305 IKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKIL 364

Query: 300 RAHGVRPNNVTFVA 313
           +     P N  FV+
Sbjct: 365 KLDPSSPENYVFVS 378


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/603 (39%), Positives = 352/603 (58%), Gaps = 37/603 (6%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPD 70
           A++ +   LK L+Q+H  L++ G   +R +L + ++ +   +   + Y+ +I      P 
Sbjct: 14  ALIDSFITLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPT 73

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSN--ISPSNYTFSAVIKSCAHLSILNLGRAV 128
            F  N++I   SK+     S  FY +++ SN  +SP NYTF+ ++++CA  S    G AV
Sbjct: 74  LFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ-SACEAGPAV 132

Query: 129 HCHVFVSGYDSDLHVQAALVNFYA-------------------------------KSNNV 157
           H  +   G++ D HV++ L+  YA                               K  ++
Sbjct: 133 HGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDI 192

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
             AR +FD MP +  V+WN+MI+GY Q G ++EA+ LF LM+  GV  +  + + V+ AC
Sbjct: 193 GFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTAC 252

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
             LG +D G+W H +I    + + V L T+L++MY +CGNV +A ++F  M+E NV  W+
Sbjct: 253 THLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWS 312

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
             I G  M+GYG + +ELF  M+  G+ PN +TF++VL  C+  G V EG   F SM+++
Sbjct: 313 TAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRD 372

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
           +G+ P +EH+ CMVDL+GRAG L EA  F+ + +  KP    W A+L AC+M+KN +LG 
Sbjct: 373 HGIEPRLEHYGCMVDLYGRAGRLEEALNFI-NTMPLKPHAGAWGALLNACRMYKNMELGE 431

Query: 398 EVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKN 457
             +  L+ VE +N G YV LSNIYA  G  DRV  VR  M  +G+ K  G S +EV+ + 
Sbjct: 432 FASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEV 491

Query: 458 YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLA 517
           + F  GDKSHP+ + I     E+  R + AGYV  + S + ++EEEE+E +L  HSEK+A
Sbjct: 492 HEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMA 551

Query: 518 LAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCL 577
           +AFGL     G+ IRIVKNLR+C DCH   K IS    REIIVRDR RFHHFK G CSC 
Sbjct: 552 IAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCK 611

Query: 578 DYW 580
           D+W
Sbjct: 612 DFW 614


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/580 (40%), Positives = 360/580 (62%), Gaps = 6/580 (1%)

Query: 4   KQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           ++P S    +IL A   +K L+    +H +   +G+    ++   LL +    G    A+
Sbjct: 242 QKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIAR 301

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
            +F  + S     +NT+I   ++   S ++   + +M+     P+  T   V+ +CA+L 
Sbjct: 302 LVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLG 361

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L  G  VH  +     DS++ V  +L++ Y+K   VD+A  +F+ + +K+ V WN+MI 
Sbjct: 362 DLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMIL 420

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY QNG  KEA+ LF +M+  G+  D  T V V+ A A        +W+H   V   +D 
Sbjct: 421 GYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDN 480

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           NV ++T+L++MYA+CG +  AR++FDMM E +VI W AMI GYG HG G E ++LF+ M+
Sbjct: 481 NVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQ 540

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
              V+PN++TF++V+SAC+H+G V+EG  +F SM+++Y L P ++H+  MVDL GRAG L
Sbjct: 541 KGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQL 600

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
           ++A+ F+++ +  KP  +V  AMLGACK+HKN +LG + A+ L  ++P+  G++V+L+NI
Sbjct: 601 DDAWNFIQE-MPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANI 659

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA     D+V  VR  M  KGL K  G S VE+  + + F  G  +HP + +IY +L+ L
Sbjct: 660 YASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETL 719

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
               + AGYVP+ +S +H++EE+ ++  L  HSE+LA+AFGL+ TSPG T+ I KNLR+C
Sbjct: 720 GDEIKAAGYVPDPDS-IHDVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVC 778

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH   K+IS+ T REIIVRD  RFHHFK GSCSC DYW
Sbjct: 779 GDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 195/380 (51%), Gaps = 24/380 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  +++H  +I  G+  +  ++T ++SL      I  A ++F  +   D   + TL+  
Sbjct: 161 LKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAG 220

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            ++   +  +L    +M  +   P + T  +++ + A +  L +GR++H + F SG++S 
Sbjct: 221 YAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESL 280

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           ++V  AL++ Y K  +  +AR VF  M  K+VV+WN+MI G  QNG ++EA   F  M D
Sbjct: 281 VNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLD 340

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G  P   T + VL ACA LGD++ G +VH+ +    LD NV +  SLI+MY++C  V  
Sbjct: 341 EGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDI 400

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A  IF+ + + NV  W AMI GY  +G   EA+ LF  M++ G++ +  T V V++A A 
Sbjct: 401 AASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALAD 459

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCM----------VDLFGRAGLLNEAYKFVKDV 370
                       S+ ++   + G+    CM          VD++ + G +  A K   D+
Sbjct: 460 -----------FSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLF-DM 507

Query: 371 IGEKPAPAVWTAMLGACKMH 390
           + E+     W AM+     H
Sbjct: 508 MQERHV-ITWNAMIDGYGTH 526



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 168/317 (52%), Gaps = 3/317 (0%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           K L Q+   +I  G+       TK++SL C  G  + A R+F  +      L++ ++   
Sbjct: 61  KELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGY 120

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           +K +   D+L F+ RM+   +      ++ +++ C     L  GR +H  +  +G++S+L
Sbjct: 121 AKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNL 180

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V  A+++ YAK   +D A K+F+RM  K +V+W ++++GY QNG AK A+ L   M++ 
Sbjct: 181 FVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEA 240

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G  PDS T V +L A A +  + +GR +H +    G +  V +  +L++MY +CG+   A
Sbjct: 241 GQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIA 300

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           R +F  M    V++W  MI G   +G   EA   F +M   G  P  VT + VL ACA+ 
Sbjct: 301 RLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANL 360

Query: 322 GLVQEG---HRVFASMR 335
           G ++ G   H++   ++
Sbjct: 361 GDLERGWFVHKLLDKLK 377



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 155/339 (45%), Gaps = 19/339 (5%)

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           +  +G+ ++   Q  +++ + K  +   A +VF+ +  K  V ++ M+ GY +N    +A
Sbjct: 70  IIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDA 129

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           +  F  M    V        C+L  C +  D+  GR +H  I+  G + N+ + T+++++
Sbjct: 130 LCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSL 189

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           YA+C  +  A ++F+ M   ++++WT +++GY  +G+   A++L  +M+  G +P++VT 
Sbjct: 190 YAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTL 249

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFV 367
           V++L A A    ++ G  +       Y    G E  V     ++D++ + G    A    
Sbjct: 250 VSILPAVADMKALRIGRSIHG-----YAFRSGFESLVNVTNALLDMYFKCGSARIARLVF 304

Query: 368 KDVIGEKPAPAV-WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
           K   G +    V W  M+  C  +   +        +L  E E P    M+  + A A  
Sbjct: 305 K---GMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLD-EGEVPTRVTMMGVLLACANL 360

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
            D   + R   + K L K    S V V   N L SM  K
Sbjct: 361 GD---LERGWFVHKLLDKLKLDSNVSV--MNSLISMYSK 394


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/566 (39%), Positives = 359/566 (63%), Gaps = 8/566 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSM--LTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFLFNT 76
           ++ L+Q+HAH++      S     L+K+++    + F  I YA+ +F  IP P+ F +N+
Sbjct: 1   MRVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNS 60

Query: 77  LIIRNSKA-NFSTDSLLFYRRMIVSNIS-PSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           LI   S+    S + +  ++++  +    P+++T + V+K+CA ++    G  VH HV  
Sbjct: 61  LIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLK 120

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
            G+ S L VQ +LVNFY K   +  ARKVF+ MP +++VAW +MISG+ + G   EA+ L
Sbjct: 121 DGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMEL 180

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           F  M+  G+ PD+ T V V++ACA  G +D+G W+H +I    +  ++ L+T+L++MYA+
Sbjct: 181 FREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAK 240

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CG + +A+++F  M   +  AW++MI G+  HG   +A++ F +M    V P++VTF+AV
Sbjct: 241 CGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAV 300

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           LSACAH GLV  G R F S+  E+G+ P VEH+ C VDL  R+GL+ EAY+ +   +   
Sbjct: 301 LSACAHGGLVSRGRR-FWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYR-ITTTMKIP 358

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P  A W ++L  CK  K  +LG  VA +LL +EP N  +Y+M+SN+Y+   + +++  +R
Sbjct: 359 PNAATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELR 418

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
            +M +K +K   G S++EVD   + F MGD+SHP    + ++++E+  R R++GY P   
Sbjct: 419 KVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSGYRPSIS 478

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
             +H++ +EE+E +L  HSE+ A+A+GL++T   + IR+VKNLR+CVDCH  IK IS   
Sbjct: 479 DVLHKVVDEEKECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVIKIISKLY 538

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
            REIIVRDR+RFH F +G+CSC D+W
Sbjct: 539 EREIIVRDRVRFHKFIKGTCSCKDFW 564


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/521 (42%), Positives = 325/521 (62%), Gaps = 12/521 (2%)

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           I FC  S   +L         +   + + +  Y RM+  ++SP+ +T+  +I++C     
Sbjct: 59  IKFCAISKSGYL---------RWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYA 109

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNSMI 179
           +  G+ +H HV   G+ +D      L++ Y    +++ AR+VFD MP  D++ V+WN+MI
Sbjct: 110 IEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMI 169

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           + Y Q+    EA  LF+ MR   V  D      +L+AC  LG ++ G+W+H +I   G++
Sbjct: 170 AAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIE 229

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
           ++  LAT++I+MY +CG + KA E+F+ + +  + +W  MI G  MHG G  A+ELF  M
Sbjct: 230 LDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEM 289

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
               V P+ +TFV VLSACAH+GLV+EG   F  M +  GL PG+EH  CMVDL GRAGL
Sbjct: 290 EREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGL 349

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L EA K + + +   P   V  A++GAC++H N +LG ++ + ++ +EP N G YV+L+N
Sbjct: 350 LEEARKLINE-MPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLAN 408

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           +YA AGR + V  VR +M  +G+KK  G+S +E +     F  G ++HP   EIY  LDE
Sbjct: 409 LYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDE 468

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           ++   R  GYVP+++  +H+++EEE+E  L YHSEKLA+AFGL++T PG T+RI KNLR+
Sbjct: 469 ILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRI 528

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCH A K IS   +REII+RDR RFHHF+ G CSC DYW
Sbjct: 529 CRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/604 (39%), Positives = 360/604 (59%), Gaps = 37/604 (6%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPD 70
           ++L +   LK ++Q+HA L+V G   +     + ++ +   +   + YA ++     +P 
Sbjct: 14  SLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHNNNPT 73

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSN---ISPSNYTFSAVIKSCAHLSILNLGRA 127
            F  N++I   SK++  + S  FY  ++ SN   +SP NYTF+ ++++CA L     G  
Sbjct: 74  LFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLC 133

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYA-------------------------------KSNN 156
           VH  V   G++ D HVQ  LV  YA                               K  +
Sbjct: 134 VHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGD 193

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           +D ARK+FD MP++  V WN+MI+GY Q G ++EA+ +F+LM+  GV  +  + V VL+A
Sbjct: 194 IDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSA 253

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C  L  +D GRWVH ++    + + V L T+L++MYA+CGNV +A ++F  M E NV  W
Sbjct: 254 CTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTW 313

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           ++ I G  M+G+G E+++LF+ M+  GV+PN +TF++VL  C+  GLV+EG + F SMR 
Sbjct: 314 SSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRN 373

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
            YG+ P +EH+  MVD++GRAG L EA  F+ + +  +P    W+A+L AC+M+KN +LG
Sbjct: 374 VYGIGPQLEHYGLMVDMYGRAGRLKEALNFI-NSMPMRPHVGAWSALLHACRMYKNKELG 432

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQK 456
                 ++ +E +N G YV+LSNIYA     + V  +R  M  KG+KK  G S +EVD +
Sbjct: 433 EIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGE 492

Query: 457 NYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKL 516
            + F +GDKSHP  +EI   L+E+    R +GYV  +   + ++EEEE+E +L  HSEK+
Sbjct: 493 VHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKV 552

Query: 517 ALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSC 576
           A+AFGL+     + IR+V NLR+C DCH+  K IS   NREIIVRDR RFHHFK G CSC
Sbjct: 553 AIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSC 612

Query: 577 LDYW 580
            DYW
Sbjct: 613 KDYW 616


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/554 (40%), Positives = 338/554 (61%), Gaps = 1/554 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           + A+ +  G    R +L+ L+ +      +  AQ +F  +      ++N +I    K   
Sbjct: 141 IQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGN 200

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             + +  ++ M+   ++    T  +V+ +C  +    LG+ V  +V   G   + ++  A
Sbjct: 201 WMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTA 260

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ YAK   +  AR++FD M  + VVAW++MISGY Q    +EA+ LF+ M+   V P+
Sbjct: 261 LIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPN 320

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T V VL+ACA LG ++ G+WVH +I  + L + ++L T+L++ YA+CG +  A E F+
Sbjct: 321 DVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFE 380

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M   N   WTA+I G   +G G EA+ELF  MR   + P +VTF+ VL AC+H+ LV+E
Sbjct: 381 SMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEE 440

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G R F SM Q+YG+ P  EH+ C+VDL GRAGL++EAY+F++ +  E P   +W A+L +
Sbjct: 441 GRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIE-PNAVIWRALLSS 499

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C +HKN ++G E  + ++S+ P + G Y++LSNIYA  G+     ++R  M  +G++K  
Sbjct: 500 CAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTP 559

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
           G S +E+D     F   D  HP   EIYQ ++E++ R + AGY+P +     E++E E+E
Sbjct: 560 GCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKE 619

Query: 507 YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
            S+ +HSEKLA+AFGLM+  PG TIR+ KNLR+C DCHSA K IS   NREI+VRDR RF
Sbjct: 620 VSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRF 679

Query: 567 HHFKRGSCSCLDYW 580
           HHFK G+CSC DYW
Sbjct: 680 HHFKDGTCSCNDYW 693



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 17/381 (4%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAG--YGRSRSMLTKLLSLVCDAGFITYAQRIF 63
           PH+P     L+  PR  P  Q+HA LI +G   G  +   + L +       + YA  +F
Sbjct: 21  PHAP-----LRTDPRYLP--QLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLF 73

Query: 64  FCIPSP--DSFLFNTLIIRNSKANFSTDSL-LFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
              P P   +  +N L+     A    D+L LF   + V+++ P  +T +  +KSC+ + 
Sbjct: 74  RLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMC 133

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L++GR +  +    G  +D  V ++L++ YA   +V  A+ +FD + +  VV WN++I+
Sbjct: 134 TLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIIT 193

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
            Y +NG   E + +F  M + GV  D  T V V+ AC ++GD  LG+WV E++  +GL  
Sbjct: 194 AYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVR 253

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           N  L T+LI+MYA+CG + KAR +FD M   +V+AW+AMISGY       EA+ LF  M+
Sbjct: 254 NRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQ 313

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
              V PN+VT V+VLSACA  G ++ G  V + +R++  L   +     +VD + + G +
Sbjct: 314 LAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKR-LSLTIILGTALVDFYAKCGCI 372

Query: 361 NEAYKFVKDVIGEKPAPAVWT 381
           ++A +  + +    P    WT
Sbjct: 373 DDAVEAFESM----PVKNSWT 389


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/560 (41%), Positives = 346/560 (61%), Gaps = 2/560 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L P +Q+HA     G   ++ + TKL+ L   +  +  A+ +F  IP  + FL+N LI  
Sbjct: 63  LNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRG 122

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            +      ++++ Y +M+   + P N+T   V+K+C+ LS +  GR++H +V  SG++ D
Sbjct: 123 YAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERD 182

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           L V AAL++ YAK   V  A +VFD++  +  V WNSM++ Y QNG   E+I L   M  
Sbjct: 183 LFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAA 242

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            GV P   T V V+++ A +  +  GR +H F    G   N  + T+LI+MYA+CG+V  
Sbjct: 243 NGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKV 302

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A  +F+ + E  V++W A+I+GY MHG    A++LF +MR    RP+++TFV VL+AC+ 
Sbjct: 303 ALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSR 361

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
             L+ EG  ++  M ++YG+ P V+H+ CM+DL G  G L+EAY  +++ +  KP   VW
Sbjct: 362 GRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRN-MSVKPDSGVW 420

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
            A+L +CK+H N +L     E L+ +EP++ G+YV+L+N+YA +G+ + VE +R +MI K
Sbjct: 421 GALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDK 480

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
            +KK++  S +EV  K Y F  GD SH N++ IY  L  L G   EAGY P++ S  H++
Sbjct: 481 RIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDV 540

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
           EE+E+   +  HSE+LA+AFGL+ TSPG  + I KNLR+C DCH AIKFIS    REI V
Sbjct: 541 EEDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITV 600

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RD  R+H FK G CSC D+W
Sbjct: 601 RDVNRYHSFKHGMCSCGDHW 620



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 221/455 (48%), Gaps = 27/455 (5%)

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP---SNYTFSAVIKSCAHLSILNLGRA 127
           SF+FN      S  +    SL  ++   V +  P   ++Y ++++++SC     LN G+ 
Sbjct: 13  SFIFNLFPFSQSFYH----SLATHQTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQ 68

Query: 128 VHCHVFVSG--YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           +H   +  G  Y+ DL  +  LV+ YA SN++  AR +FD++P +++  WN +I GY  N
Sbjct: 69  LHAQFYHLGIAYNQDLATK--LVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWN 126

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G    AI L++ M D+G+ PD+ T   VL AC+ L  I  GR +HE+++  G + ++ + 
Sbjct: 127 GPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVG 186

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
            +LI+MYA+CG V  A  +FD +   + + W +M++ Y  +G+  E++ L   M A+GVR
Sbjct: 187 AALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVR 246

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           P   T V V+S+ A    +  G R        +G     +    ++D++ + G +  A  
Sbjct: 247 PTEATLVTVISSSADVACLPYG-REIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALA 305

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
             + +  ++     W A++    MH    L V   +    +  E+   ++    + A   
Sbjct: 306 LFERLREKRVVS--WNAIITGYAMH---GLAVGALDLFDKMRKEDRPDHITFVGVLAACS 360

Query: 426 R---MDRVEVVRNIMIQK-GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE-- 479
           R   +D    + N+M++  G+   V + T  +D   +   + D+++     +    D   
Sbjct: 361 RGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQL-DEAYDLIRNMSVKPDSGV 419

Query: 480 ---LMGRCREAGYVPESESAMHELEEEEREYSLRY 511
              L+  C+  G V  +E A+ +L E E + S  Y
Sbjct: 420 WGALLNSCKIHGNVELAELALEKLIELEPDDSGNY 454


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/572 (40%), Positives = 344/572 (60%), Gaps = 5/572 (0%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLS--LVCDAGFITYAQRIFFCIPSPD 70
           +++K+  +   L Q+HAH+I     ++  +  + LS   +  +  + Y+ ++F  I  P 
Sbjct: 73  SLIKSCSKKTHLLQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMKPS 132

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
              +N +I   S ++        YR M    + P+  + S V+KSC  +S L  G  +H 
Sbjct: 133 GSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHA 192

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
            +   G+ SD  +   L++ Y+  +  + A KVFD +P    V+WN +IS    N   ++
Sbjct: 193 RILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRD 252

Query: 191 AIGLFNLMRDF--GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
           A+ +F++M+    G  PD  TC+ +L ACA LG ++ G  VH +I   G D  + L  SL
Sbjct: 253 ALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLCNSL 312

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           I MY+RCG + KA  IF  M E NV++W+AMISG+ MHGYG EA+E F +M+  GV P++
Sbjct: 313 ITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDD 372

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
            T   VLSAC+H GLV +G   F  M + +G+ P + H+ CMVDL GRAGLL++AY+ + 
Sbjct: 373 QTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIM 432

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
            ++  KP   +W  +LGAC++H++  LG  V  HL+ ++ +  G YV+L NIY+  G  D
Sbjct: 433 SMV-IKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIYSSVGNWD 491

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
           +V  +R  M +KG++   G ST+E+  K + F + D  HP T+EIY+ LDE+  + + AG
Sbjct: 492 KVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEIGKQLKIAG 551

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           YV E  S +H L  EE+   L YHSEKLA+AFG++ T PG TIR+ KNLR+CVDCH+  K
Sbjct: 552 YVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAK 611

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            +S A NRE+++RDR RFHHF+ G CSC  YW
Sbjct: 612 VLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/535 (41%), Positives = 334/535 (62%), Gaps = 3/535 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L+      G+I  AQ++F  IP  D   +N LI   ++     ++L  ++ M+ +N+ 
Sbjct: 173 TALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVK 232

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   T   V+ +CA  + + LGR VH  +   G+ S+L +  AL++ Y K   V+ A  +
Sbjct: 233 PDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGL 292

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F+ +  K V++WN++I GY      KEA+ LF  M   G +P+  T + +L ACA LG I
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAI 352

Query: 224 DLGRWVHEFIVG--QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           D+GRW+H +I    +G+     L TSLI+MYA+CG++  A+++FD M   ++ +W AMI 
Sbjct: 353 DIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIF 412

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           G+ MHG    A ++F RMR  G+ P+++TFV +LSAC+H+G++  G  +F SM ++Y + 
Sbjct: 413 GFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKIT 472

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P +EH+ CM+DL G +GL  EA + + + +   P   +W ++L ACKMH N +LG   A+
Sbjct: 473 PKLEHYGCMIDLLGHSGLFKEAEEMI-NSMEMDPDGVIWCSLLKACKMHGNVELGESFAQ 531

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
           +L+ +EP+N G YV+LSNIYA AGR + V   R ++  KG+KK  G S++E+D   + F 
Sbjct: 532 NLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFI 591

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
           +GDK HP   EIY  L+E+     EAG+VP++   + E+EEE +E +LR+HSEKLA+AFG
Sbjct: 592 IGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFG 651

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSC 576
           L+ T PG  + IVKNLR+C +CH A K IS    REII RDR RFHHF  G CSC
Sbjct: 652 LISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 130/430 (30%), Positives = 212/430 (49%), Gaps = 45/430 (10%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSL-VCDAGF--ITYAQRIFFCIPSPDSFLFNTL 77
           L+ L+ +HA +I  G   +   L+KL+   V    F  +TYA  +F  I  P+  ++NT+
Sbjct: 15  LQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTM 74

Query: 78  IIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
              ++ ++    +L  Y  MI   + P++YTF  ++K+CA       G+ +H HV   G 
Sbjct: 75  FRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGC 134

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDR------------------------------- 166
           D DL+V  +L+  Y K+   + ARKVFD+                               
Sbjct: 135 DLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDE 194

Query: 167 MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
           +P K VV+WN++ISGY + G  KEA+ LF  M    V PD +T V VL+ACAQ   I+LG
Sbjct: 195 IPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELG 254

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
           R VH +I   G   N+ +  +LI++Y +CG V  A  +F+ +S  +VI+W  +I GY   
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHM 314

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
               EA+ LF  M   G  PN VT +++L ACAH G +  G  +   + +    L GV +
Sbjct: 315 NLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKR---LKGVSN 371

Query: 347 ----HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
                  ++D++ + G +  A +    ++    + + W AM+    MH   +   ++   
Sbjct: 372 PSSLRTSLIDMYAKCGDIEAAQQVFDSMLNR--SLSSWNAMIFGFAMHGRANPAFDIFSR 429

Query: 403 LLS--VEPEN 410
           +    +EP++
Sbjct: 430 MRKDGIEPDD 439



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 77/195 (39%), Gaps = 33/195 (16%)

Query: 33  VAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLL 92
           + G     S+ T L+ +    G I  AQ++F  + +     +N +I   +    +  +  
Sbjct: 366 LKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFD 425

Query: 93  FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYA 152
            + RM    I P + TF  ++ +C+H  +L+LGR    H+F S    D  +   L ++  
Sbjct: 426 IFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGR----HIFRS-MTEDYKITPKLEHY-- 478

Query: 153 KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVC 212
                                    MI     +G  KEA  + N M    ++PD      
Sbjct: 479 -----------------------GCMIDLLGHSGLFKEAEEMINSME---MDPDGVIWCS 512

Query: 213 VLAACAQLGDIDLGR 227
           +L AC   G+++LG 
Sbjct: 513 LLKACKMHGNVELGE 527


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/533 (41%), Positives = 330/533 (61%), Gaps = 3/533 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T +++     G +  AQ++F  IP  D   +N +I   ++     ++L  +  M+  ++ 
Sbjct: 148 TAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVK 207

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   T + V+ +C H   + LGR +H  +   G+ S+L +  AL++ Y+K   ++ A  +
Sbjct: 208 PDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGL 267

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F+ +  K V++WN++I GY      KEA+ +F  M   G  P+  T + +L ACA LG I
Sbjct: 268 FEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAI 327

Query: 224 DLGRWVHEFIVGQ--GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           D+GRW+H +I  +  G+  N  L TSLI+MYA+CGN+  A ++FD +   ++ +  AMI 
Sbjct: 328 DIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIF 387

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           G+ MHG    A +L  RM+  G+ P+++TFV +LSAC+HAGL   G ++F SM  +Y + 
Sbjct: 388 GFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIE 447

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P +EH+ CM+DL GR+GL  EA + +  +  E P   +W ++L ACK+HKN +LG  +A+
Sbjct: 448 PKLEHYGCMIDLLGRSGLFKEAEELINSMTME-PDGVIWGSLLKACKIHKNLELGELIAQ 506

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
            L+ +EP+NPG YV+LSNIYA + R D V  VR ++  KGLKK  G S++E+D   + F 
Sbjct: 507 KLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFL 566

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
           +GDK HP   EIY+ L+E+     E G+V ++   + E+EEE +E +L YHSEKLA+AFG
Sbjct: 567 IGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFG 626

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSC 574
           L+ T PG  +RIVKNLR+C +CH A K IS    REII RDR RFHHFK G C
Sbjct: 627 LISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 125/424 (29%), Positives = 208/424 (49%), Gaps = 39/424 (9%)

Query: 32  IVAGYGRSRSMLTKLLSLVCDAGF---ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFST 88
           I  G   +   L+KLL       +   + YA  +F  I  P+   +NT+I  ++ ++   
Sbjct: 1   IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60

Query: 89  DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
            +L  Y  MI   +SP++YTF  + KSCA       G+ +H  +   G   DLHV  +L+
Sbjct: 61  SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLI 120

Query: 149 NFYAKSN-------------------------------NVDVARKVFDRMPDKSVVAWNS 177
           + YA++                                N+D A+K+FD +P K VV+WN+
Sbjct: 121 SMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNA 180

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           MISGY + G  KEA+ LFN M    V PD +T   VL+ C   G+++LGR +H +I   G
Sbjct: 181 MISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHG 240

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
              N+ L  +LI++Y++CG + +A  +F+ +   +VI+W  +I GY    +  EA+ +F 
Sbjct: 241 FGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQ 300

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY-GLLPGVEHHVCMVDLFGR 356
            M   G  PN+VT +++L ACAH G +  G  +   + ++  G++        ++D++ +
Sbjct: 301 EMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAK 360

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHY 414
            G + EA   V D I  K   +   AM+    MH   D   ++   +    +EP++    
Sbjct: 361 CGNI-EAANQVFDTILNKSLSSC-NAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFV 418

Query: 415 VMLS 418
            +LS
Sbjct: 419 GLLS 422



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 145/266 (54%), Gaps = 4/266 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H+ +   G+G +  ++  L+ L    G +  A  +F  +   D   +NTLI   +  
Sbjct: 230 RQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYI 289

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV--FVSGYDSDLH 142
           N   ++LL ++ M+    +P++ T  +++ +CAHL  +++GR +H ++   + G  ++  
Sbjct: 290 NHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTS 349

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           +Q +L++ YAK  N++ A +VFD + +KS+ + N+MI G+  +G A  A  L + M+  G
Sbjct: 350 LQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDG 409

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHE-FIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           + PD  T V +L+AC+  G  DLGR + +   +   ++  +     +I++  R G   +A
Sbjct: 410 IEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEA 469

Query: 262 REIFDMMS-ELNVIAWTAMISGYGMH 286
            E+ + M+ E + + W +++    +H
Sbjct: 470 EELINSMTMEPDGVIWGSLLKACKIH 495


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/603 (39%), Positives = 354/603 (58%), Gaps = 36/603 (5%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPD 70
           A+L +G   K ++Q+HA L V G  +   ++   +  V   D  ++ YA +I      P 
Sbjct: 11  ALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPT 70

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVS--NISPSNYTFSAVIKSCAHLSILNLGRAV 128
            F  N++I  + K+     S  FYRR++ S  ++ P NYT + ++++C  L +   G  V
Sbjct: 71  LFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQV 130

Query: 129 HCHVFVSGYDSDLHVQAALVNFYA-------------------------------KSNNV 157
           H      G+D+D HVQ  L++ YA                               +  +V
Sbjct: 131 HGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDV 190

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
             ARK+F+ MP++  +AWN+MISGY Q G ++EA+ +F+LM+  GV  +    + VL+AC
Sbjct: 191 VFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSAC 250

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
            QLG +D GRW H +I    + + V LAT+L+++YA+CG++ KA E+F  M E NV  W+
Sbjct: 251 TQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWS 310

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           + ++G  M+G+G + +ELF  M+  GV PN VTFV+VL  C+  G V EG R F SMR E
Sbjct: 311 SALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNE 370

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
           +G+ P +EH+ C+VDL+ RAG L +A   ++  +  KP  AVW+++L A +M+KN +LGV
Sbjct: 371 FGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQ-MPMKPHAAVWSSLLHASRMYKNLELGV 429

Query: 398 EVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKN 457
             ++ +L +E  N G YV+LSNIYA +   D V  VR  M  KG++K  G S +EV+ + 
Sbjct: 430 LASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEV 489

Query: 458 YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLA 517
           + F +GDKSHP   +I     ++  R R AGY  ++   M +++EEE+E +L  HSEK A
Sbjct: 490 HEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAA 549

Query: 518 LAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCL 577
           +AFG+M     + IRIVKNLR+C DCH     IS   NREIIVRDR RFHHFK G CSC 
Sbjct: 550 IAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCN 609

Query: 578 DYW 580
            +W
Sbjct: 610 GFW 612


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/481 (44%), Positives = 316/481 (65%), Gaps = 5/481 (1%)

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY----AKSNNVDV 159
           P+ +T+  V+K+CA +  LNLG++VH  V   G+  +++VQ  LV+ Y         ++ 
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           ARKVFD M     V+W++MI GY + G + +AI LF  M+  GV PD  T V VL+AC  
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           LG ++LG+WV  ++  + +  NV L+ +LI+M+A+CG+V KA  +F  M E N+++WT++
Sbjct: 128 LGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSV 187

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           I G  MHG G EAV +F  M   GV P++V F+ +LSAC+H+GLV +G R F SMR+++ 
Sbjct: 188 IGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFS 247

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           ++P +EH+ CMVD+  RAGL+ EA KFV+++  + P P VW  ++ AC+ H    LG ++
Sbjct: 248 IVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPID-PNPVVWRTLINACRAHGELKLGEKI 306

Query: 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYL 459
              L+  EP +  +YV+LSNIYA     ++   +R  M  KG+KK  G + +E+D + Y 
Sbjct: 307 TRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYE 366

Query: 460 FSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALA 519
           F  GDKSH  + EIY+ +DE+    + AGY+P +   + ++++E++E +L  HSEKLA+A
Sbjct: 367 FVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHSEKLAIA 426

Query: 520 FGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           F L+ T PG  IRIVKNLR+C DCHSA KFIS   NREI+VRDR RFHHFK G CSC D+
Sbjct: 427 FALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCSCRDF 486

Query: 580 W 580
           W
Sbjct: 487 W 487



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 145/298 (48%), Gaps = 15/298 (5%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVC----DAG 54
           + K P+   Y  +LKA   +  L   + VH  ++  G+G   ++   L+ + C      G
Sbjct: 4   RKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEG 63

Query: 55  FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
            I +A+++F  +   DS  ++ +I    +   S+D++  +R M +  + P   T  +V+ 
Sbjct: 64  GIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLS 123

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           +C  L  L LG+ V  +V       ++ +  AL++ +AK  +VD A  +F  M ++++V+
Sbjct: 124 ACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVS 183

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           W S+I G   +G   EA+ +F  M   GV PD    + +L+AC+  G +D G+    +  
Sbjct: 184 WTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGK---RYFD 240

Query: 235 GQGLDVNVVLATS----LINMYARCGNVSKA-REIFDMMSELNVIAWTAMISGYGMHG 287
               D ++V        +++M  R G V +A + + +M  + N + W  +I+    HG
Sbjct: 241 SMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHG 298


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/572 (39%), Positives = 350/572 (61%), Gaps = 5/572 (0%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLL---SLVCDAGFITYAQRIFFCIPSP 69
           ++L     L  L+Q+ A+ I        S+LTKL+   +L     ++ +A  +F  I   
Sbjct: 34  SLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDK 93

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D  LFN +    +++N    +   +  ++ S + P +YTFS+++K+CA    L  G  +H
Sbjct: 94  DIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLH 153

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
           C     G + ++++   L+N YA+ N+++ AR VFD M    +V++N++I+GY ++    
Sbjct: 154 CFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPN 213

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           EA+ LF  ++   + P   T + V+ +CA LG +DLG+W+HE++  +G D  V + T+LI
Sbjct: 214 EALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALI 273

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           +M+A+CG+++ A  IF+ M   +  AW+AMI  +  HG G +A+ +F  M+  GVRP+ +
Sbjct: 274 DMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEI 333

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           TF+ +L AC+HAGLV++G   F SM + YG+ PG++H+ CMVDL GRAG L+EAY FV D
Sbjct: 334 TFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFV-D 392

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
            +  K  P +W  +L AC  H N ++   V E +  ++  + G YV+LSN+YA  GR + 
Sbjct: 393 KLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWED 452

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
           V  +R +M  +G+ K  G S+VEV+   + F  GD  H  + E+ + LDELM   +  GY
Sbjct: 453 VNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGY 512

Query: 490 VPESESAMH-ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           VP++    H ++EEE +E  LRYHSEKLA+AFGL+ T PG TIR+ KNLR+C DCH+A K
Sbjct: 513 VPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAK 572

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            IS    R+I++RD  RFH F+ G CSC D+W
Sbjct: 573 LISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/578 (38%), Positives = 352/578 (60%), Gaps = 4/578 (0%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    + ++LK+   +  L   + VH  ++  G          L+++      I   +++
Sbjct: 103 PDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKV 162

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P  D   +NT+I   +++    D+L   R M  S++ P  +T S+V+   +    +
Sbjct: 163 FELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDV 222

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+ +H +V   G DSD+++ ++LV+ YAKS  ++ + +VF  +  +  ++WNS+++GY
Sbjct: 223 LKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGY 282

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            QNG   EA+ LF  M    V P +     V+ ACA L  + LG+ +H +++  G   N+
Sbjct: 283 VQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNI 342

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +A++L++MY++CGN+  AR+IFD M+  + ++WTA+I G+ +HG+G EAV LF  M+  
Sbjct: 343 FIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQ 402

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV+PN V FVAVL+AC+H GLV E    F SM + YGL   +EH+  + DL GRAG L E
Sbjct: 403 GVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEE 462

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           AY F+  +  E P  +VW+ +L +C +HKN +L  +VAE + +++ EN G YV++ N+YA
Sbjct: 463 AYDFISKMRVE-PTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYA 521

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             GR   +  +R  + +KGL+K    S +E+  K + F  GD+SHP+ + I ++L  +M 
Sbjct: 522 SNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVME 581

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           +  + GYV ++   +H+++EE +   L  HSE+LA+AFG++ T PG TIR+ KN+R+C D
Sbjct: 582 QMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTD 641

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH AIKFIS  T REIIVRD  RFHHF RGSCSC DYW
Sbjct: 642 CHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 201/399 (50%), Gaps = 15/399 (3%)

Query: 12  EAILKAGPRLKP---LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS 68
           + ++K   R+K     +Q+HA  I      S +  + ++S+  +   +  A  +F  + S
Sbjct: 9   KTLIKNPTRIKSKSQAKQLHAQFIRT-QSLSHTSASIVISIYTNLKLLHEALLVFKTLES 67

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
           P    + ++I   +  +  + +L  +  M  S   P +  F +V+KSC  +  L  G +V
Sbjct: 68  PPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESV 127

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H  +   G D DL+   AL+N Y+K   +D  RKVF+ MP K VV++N++I+GY Q+G  
Sbjct: 128 HGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMY 187

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
           ++A+ +   M    + PD+ T   VL   ++  D+  G+ +H +++ +G+D +V + +SL
Sbjct: 188 EDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSL 247

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           ++MYA+   +  +  +F  +   + I+W ++++GY  +G   EA+ LF +M +  VRP  
Sbjct: 248 VDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGA 307

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAY 364
           V F +V+ ACAH   +  G ++       Y L  G   ++     +VD++ + G +  A 
Sbjct: 308 VAFSSVIPACAHLATLHLGKQLHG-----YVLRGGFGRNIFIASALVDMYSKCGNIQAAR 362

Query: 365 KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
           K    +         WTA++    +H +    V + E +
Sbjct: 363 KIFDRMNLHDEVS--WTAIIMGHALHGHGHEAVSLFEEM 399


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/563 (41%), Positives = 353/563 (62%), Gaps = 3/563 (0%)

Query: 12  EAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS 71
           E +  +  + K L+++HA +I  G+    S+LT+LL  +   G + YA+++F  +P P  
Sbjct: 15  ELLRASSSKPKQLKKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRI 74

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           FL+NTL     +     +S+L Y++M    + P  +T+  V+K+ + L +L  G ++H H
Sbjct: 75  FLWNTLFKGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAH 134

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           V  +G++    V   LV  Y K   +  A  +F+ M  K +VAWN+ I+   Q G +  A
Sbjct: 135 VLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIA 194

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           +  FN M    V  DS T V +L+AC QLG +D+G  +++    + ++ N+++  + ++M
Sbjct: 195 LEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENARLDM 254

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           + +CG+   AR +FD M + NV++W+ MI GY M+G   EA+ LF  M+  G+RPN VTF
Sbjct: 255 HLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTF 314

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQ--EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           + VLSAC+HAGLV EG R F+ M +  +  L P  EH+ CMVDL GR+GLL EAY+F+K 
Sbjct: 315 LGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKK 374

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
           +  E P   +W A+LGAC +H++  LG +VA+ L+   P+   ++V+LSNIYA AG+ D 
Sbjct: 375 MRVE-PDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDC 433

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
           V+ VR+ M + G KK   YS+VE D K + F+ GD SHP +  IY+ LDE++ + R  GY
Sbjct: 434 VDKVRSKMRKLGTKKVAAYSSVEFDGKIHFFNRGDISHPQSKAIYEKLDEILKKIRNMGY 493

Query: 490 VPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKF 549
           VP++ S  H++E EE+E SL +HSEKLA+AFGL+    G  IR++KNLR C DCH   KF
Sbjct: 494 VPDTGSVFHDVEMEEKESSLSHHSEKLAIAFGLINGRAGHPIRVMKNLRTCDDCHVFSKF 553

Query: 550 ISVATNREIIVRDRLRFHHFKRG 572
           +S  T+REII+RD+ RFHHF+ G
Sbjct: 554 VSRLTSREIIMRDKNRFHHFRNG 576


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/575 (39%), Positives = 357/575 (62%), Gaps = 9/575 (1%)

Query: 14  ILKAGPR--LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS 71
           IL A  R  L     VH  L+  G+ +   + TKL+++  +   +  A+++F        
Sbjct: 76  ILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTI 135

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH----LSILNLGRA 127
           +++N L    + A    D L  Y RM +  +S   +T++ ++K+C      +S L  G+ 
Sbjct: 136 YVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKE 195

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H H+   GY + +HV   L++ YA+   V  A  VFD MP K+VV+W++MI+ Y +NG 
Sbjct: 196 IHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGK 255

Query: 188 AKEAIGLFN--LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
             EA+ LF   ++      P+S T V VL ACA    ++ G+ +H +I+ +GLD  + + 
Sbjct: 256 PYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVI 315

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           ++LI MYARCG +   + IFD M + +V+ W ++IS YG+HGYG +A+++F  M  HG  
Sbjct: 316 SALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFS 375

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           P++++F++VL AC+H GLV+EG ++F SM +E+G+ P VEH+ CMVDL GRA  L+EA K
Sbjct: 376 PSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAK 435

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
            ++D+  E P P VW ++LGAC++H + +L    ++ L  +EP N G+YV+L++IYA A 
Sbjct: 436 IIEDLRIE-PGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAE 494

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
             D V+ V+ ++  + L+K  G S +EV +K Y F+  D+ +P   +++  L  L    +
Sbjct: 495 MWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMK 554

Query: 486 EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
           + GY P+++  +++L++EE+E  +  HSEKLA+AFGL+ TS G TIRI KNLR+C DCHS
Sbjct: 555 QRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHS 614

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             KFIS   +REI+VRD  RFHHFK G CSC DYW
Sbjct: 615 VTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 195/423 (46%), Gaps = 47/423 (11%)

Query: 68  SPDSFLFNTLIIRNSKANFSTDSL-----LFYRRMIVSNIS-PSNYTFSAVIKSCAHLSI 121
           S  SF FN     NS  N    SL     L     ++S+ S P+  T   +I S A  + 
Sbjct: 25  SVSSFSFNPSTPPNSNNNHLIQSLCKQGNLKQALYLLSHESNPTQQTCELLILSAARRNS 84

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L+    VH  +   G+D D  +   L+N +++ + VD ARKVFD+   +++  WN++   
Sbjct: 85  LSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRA 144

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ----LGDIDLGRWVHEFIVGQG 237
               G   + + L+  M   GV+ D  T   +L AC      +  +  G+ +H  I+  G
Sbjct: 145 LALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHG 204

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
              +V + T+L++MYAR G VS A  +FD M   NV++W+AMI+ Y  +G   EA+ELF 
Sbjct: 205 YGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFR 264

Query: 298 RM--RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM--RQEYGLLPGVEHHVCM--- 350
            M    H   PN+VT V+VL ACA    +++G  + A +  R    +LP +   + M   
Sbjct: 265 EMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYAR 324

Query: 351 -------------------------VDLFGRAGLLNEAYKFVKDVI--GEKPAPAVWTAM 383
                                    +  +G  G   +A K  +++I  G  P+   + ++
Sbjct: 325 CGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISV 384

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPG--HYVMLSNIYALAGRMDR-VEVVRNIMIQK 440
           LGAC      + G ++ E ++      P   HY  + ++   A R+D   +++ ++ I+ 
Sbjct: 385 LGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEP 444

Query: 441 GLK 443
           G K
Sbjct: 445 GPK 447


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/578 (38%), Positives = 351/578 (60%), Gaps = 4/578 (0%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   Y +IL+    L  L   +Q+H  +I +G+  +  + + L+ +    G +  A+ I
Sbjct: 413 PNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGI 472

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
              +   D   +  +I   ++ +   ++L  ++ M    I   N  FS+ I +CA +  L
Sbjct: 473 LQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQAL 532

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           N G+ +H   ++SGY  DL +  ALV+ YA+      A   F+++  K  ++WN++ISG+
Sbjct: 533 NQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGF 592

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q+G  +EA+ +F+ M   GV  +  T    ++A A   +I  G+ +H  ++  G D   
Sbjct: 593 AQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSET 652

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
             +  LI +Y++CG++  A+  F  M E NV++W AMI+GY  HGYG+EAV LF  M+  
Sbjct: 653 EASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQL 712

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+ PN+VTFV VLSAC+H GLV EG   F SM +E+GL+P  EH+VC+VDL GRA LL  
Sbjct: 713 GLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCC 772

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A +F++++  E P   +W  +L AC +HKN ++G   A HLL +EPE+   YV+LSN+YA
Sbjct: 773 AREFIEEMPIE-PDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYA 831

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
           ++G+ D  +  R +M  +G+KK  G S +EV    + F +GD+ HP   +IY+Y+D+L  
Sbjct: 832 VSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNE 891

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           R  E GYV +  + ++++E+E+++ +   HSEKLA+AFGL+  +  M IR++KNLR+C D
Sbjct: 892 RAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCND 951

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+ IKF+S  +NR I+VRD  RFHHF+ G CSC DYW
Sbjct: 952 CHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 210/418 (50%), Gaps = 18/418 (4%)

Query: 2   KNKQPHSPAYEAILKAGPRLK-PLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           +N  P    + ++L+A    K P Q   Q+HA +I  G+G S  +   L+ L    G + 
Sbjct: 105 ENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVD 164

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A+ +F  +   DS  +  +I   S+     +++L + +M  S + P+ Y FS+V+ +C 
Sbjct: 165 LAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACT 224

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            + +  LG  +H  +   G  S+  V  ALV  Y++  N+  A ++F +M  +  +++NS
Sbjct: 225 KIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNS 284

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +ISG  Q GF+  A+ LF  M+   + PD  T   +L+ACA +G    G+ +H +++  G
Sbjct: 285 LISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMG 344

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           +  ++++  SL+++Y +C ++  A E F      NV+ W  M+  YG  G  +E+  +F 
Sbjct: 345 MSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFL 404

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFG 355
           +M+  G+ PN  T+ ++L  C   G +  G ++   + +  G    V  +VC  ++D++ 
Sbjct: 405 QMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKS-GFQFNV--YVCSVLIDMYA 461

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL-LSVEPENPG 412
           + G L+ A   ++ +  E      WTAM+     H  F      AE L L  E EN G
Sbjct: 462 KHGELDTARGILQRLREEDVVS--WTAMIAGYTQHDLF------AEALKLFQEMENQG 511



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 186/364 (51%), Gaps = 8/364 (2%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    + ++L A  +++     +Q+H  ++  G      +   L++L    G +  A++I
Sbjct: 211 PTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQI 270

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   D   +N+LI   ++  FS  +L  + +M +  + P   T ++++ +CA +   
Sbjct: 271 FSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAG 330

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+ +H +V   G  SDL ++ +L++ Y K  +++ A + F     ++VV WN M+  Y
Sbjct: 331 YKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAY 390

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q G   E+  +F  M+  G+ P+  T   +L  C  LG +DLG  +H  ++  G   NV
Sbjct: 391 GQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNV 450

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            + + LI+MYA+ G +  AR I   + E +V++WTAMI+GY  H    EA++LF  M   
Sbjct: 451 YVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQ 510

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY--GLLPGVEHHVCMVDLFGRAGLL 360
           G+R +N+ F + +SACA    + +G ++ A   Q Y  G    +     +V L+ R G  
Sbjct: 511 GIRSDNIGFSSAISACAGIQALNQGQQIHA---QSYISGYSEDLSIGNALVSLYARCGRA 567

Query: 361 NEAY 364
            +AY
Sbjct: 568 QDAY 571



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 188/368 (51%), Gaps = 7/368 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H+++I  G      +   LL L      I  A   F    + +  L+N +++   + 
Sbjct: 334 KQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQL 393

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
              ++S   + +M +  + P+ YT+ +++++C  L  L+LG  +H  V  SG+  +++V 
Sbjct: 394 GNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVC 453

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           + L++ YAK   +D AR +  R+ ++ VV+W +MI+GY Q+    EA+ LF  M + G+ 
Sbjct: 454 SVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIR 513

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            D+      ++ACA +  ++ G+ +H      G   ++ +  +L+++YARCG    A   
Sbjct: 514 SDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLA 573

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ +   + I+W A+ISG+   G+  EA+++F +M   GV  N  TF + +SA A+   +
Sbjct: 574 FEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANI 633

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTA 382
           ++G ++ A M +  G     E    ++ L+ + G + +A    K    E P   V  W A
Sbjct: 634 KQGKQIHAMMIKT-GYDSETEASNVLITLYSKCGSIEDA----KREFFEMPEKNVVSWNA 688

Query: 383 MLGACKMH 390
           M+     H
Sbjct: 689 MITGYSQH 696



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 222/455 (48%), Gaps = 8/455 (1%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           N Q +   +E    +G  L   +++HA +  +G+     + ++L+ +    G +  A ++
Sbjct: 9   NVQTYLWLFEGCFNSGSLLDA-KKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKL 67

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA-HLSI 121
           F  IPS +   +N +I        ++  L  +  MI  N++P   TF++V+++C+   + 
Sbjct: 68  FDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAP 127

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
             +   +H  +   G+ S   V   L++ Y+K+ +VD+A+ VF+R+  K  V+W +MISG
Sbjct: 128 FQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISG 187

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             QNG   EAI LF  M    V P       VL+AC ++    LG  +H FIV  GL   
Sbjct: 188 LSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSE 247

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +  +L+ +Y+R GN+  A +IF  M   + I++ ++ISG    G+   A++LF +M+ 
Sbjct: 248 TFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQL 307

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             ++P+ VT  ++LSACA  G   +G ++ + + +  G+   +     ++DL+ +   + 
Sbjct: 308 DCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIK-MGMSSDLIIEGSLLDLYVKCFDIE 366

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
            A+++   +  E     +W  ML A     N      +    + +E   P  Y   S + 
Sbjct: 367 TAHEYF--LTTETENVVLWNVMLVAYGQLGNLSESYWIFLQ-MQIEGLMPNQYTYPSILR 423

Query: 422 ALA--GRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
                G +D  E +   +I+ G + +V   +V +D
Sbjct: 424 TCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLID 458



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 93/235 (39%), Gaps = 33/235 (14%)

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M + G+  +  T + +   C   G +   + +H  I   G D   VL + LI++Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           V  A ++FD +   NV  W  +ISG       ++ + LF  M    V P+  TF +VL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 318 CA------------HAGLV-------------------QEGHRVFASMRQEYGLLPGVEH 346
           C+            HA ++                   + GH   A +  E   L     
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEK--PAPAVWTAMLGACKMHKNFDLGVEV 399
            V M+    + G  +EA      +      P P V++++L AC   + F LG ++
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQL 235


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/566 (41%), Positives = 352/566 (62%), Gaps = 4/566 (0%)

Query: 18  GPRLKPLQQVHAHLIVAGYGRSRSMLTK--LLSLVCDAGFITYAQRIFFCIPSPDSFLFN 75
           G     L+Q+HA  I  G         K  + +LV  +  +++A +IF  I +P+ F +N
Sbjct: 45  GSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWN 104

Query: 76  TLIIRNSKA-NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           T+I   +++ N S    LF +    S+I P  +TF  + K+ A L  ++LG  +H  V  
Sbjct: 105 TMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVR 164

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
           +G+DS   VQ +LV+ Y+   ++  A +VF+ M  +  VAWNS+I+G+  NG   EA+ L
Sbjct: 165 NGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTL 224

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           +  M   GV PD  T V +L+AC +LG + LG  VH ++V  GL  N   + +L+++Y++
Sbjct: 225 YREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSK 284

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CGN   A+++FD M E +V++WT++I G  ++G G EA++LF  +   G++P+ +TFV V
Sbjct: 285 CGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGV 344

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L AC+H G++ EG   F  M++EYG+LP +EHH CMVDL  RAG + +AY ++++ +   
Sbjct: 345 LYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRN-MPVP 403

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P   +W  +LGAC +H + +LG      +  +E  + G +V+LSN+YA   R   V+ VR
Sbjct: 404 PNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVR 463

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
            IM+ KG+KK  GYS VE+  + Y F MGD+SHP + E Y  L ++    +  GYVP + 
Sbjct: 464 KIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTV 523

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
           + + ++EEEE+E +L +H+EK+A+AF L+ T PG  IRI+KNLR+C DCH AIK IS   
Sbjct: 524 NVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVF 583

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
            REIIVRDR RFHHFK GSCSC DYW
Sbjct: 584 EREIIVRDRSRFHHFKDGSCSCKDYW 609


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/588 (40%), Positives = 359/588 (61%), Gaps = 10/588 (1%)

Query: 2   KNKQPHSPAYEA-ILKAGPR--LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           +   P    YE  IL  G R  L    +VH H++  G  +   + TKL+ +  D G + Y
Sbjct: 71  QESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDY 130

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+++F        +++N L    + A    + L  Y +M    +    +T++ V+K+C  
Sbjct: 131 ARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVA 190

Query: 119 LSI----LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
                  L  G+ +H H+   GY+S +++   LV+ YA+   VD A  VF+ MP ++VV+
Sbjct: 191 SECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVS 250

Query: 175 WNSMISGYEQNGFAKEAIGLFNLM--RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           W++MI+ Y +NG A EA+  F  M       +P+S T V VL ACA L  ++ GR +H +
Sbjct: 251 WSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGY 310

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           I+ +GLD  + + ++L+ MY RCG +   + +FD M + +V++W ++IS YG+HGYG +A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKA 370

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           +++F  M A+G  P  VTFV+VL AC+H GLV+EG R+F SM +++G+ P VEH+ CMVD
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVD 430

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L GRA  L+EA K V+D+  E P P VW ++LG+C++H N +L    +  L ++EP+N G
Sbjct: 431 LLGRANRLDEAAKMVQDMRTE-PGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAG 489

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
           +YV+L++IYA A   D V+ V+ ++  +GL+K  G   +EV +K Y F   D+ +P   +
Sbjct: 490 NYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQ 549

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           I+ +L +L    +E GY+P+++  ++ELE EE+E  +  HSEKLALAFGL+ TS G  IR
Sbjct: 550 IHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIR 609

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           I KNLR+C DCH   KFIS    +EI+VRD  RFH FK G CSC DYW
Sbjct: 610 ITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/578 (39%), Positives = 360/578 (62%), Gaps = 8/578 (1%)

Query: 9   PAYEAILKAGPRLKPL------QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P++  I+   P +  L      +++H + + AG+    ++ T L+ +    G +  A+ +
Sbjct: 234 PSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLL 293

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   +   +N++I    +     ++++ +++M+   + P++ +    + +CA L  L
Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDL 353

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             GR +H        D ++ V  +L++ Y K   VD A  +F ++  +++V+WN+MI G+
Sbjct: 354 ERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGF 413

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            QNG   EA+  F+ M+   V PD+ T V V+ A A+L      +W+H  ++   LD NV
Sbjct: 414 AQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNV 473

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            + T+L++MYA+CG +  AR IFDMMSE +V  W AMI GYG HG G  A+ELF  M+  
Sbjct: 474 FVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKG 533

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
            +RPN VTF++V+SAC+H+GLV+ G + F  M++ Y + P ++H+  MVDL GRAG LNE
Sbjct: 534 TIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNE 593

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A+ F+   +  KPA  V+ AMLGAC++HKN +   +VAE L  + PE+ G++V+L+NIY 
Sbjct: 594 AWDFIMQ-MPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYR 652

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            A   ++V  VR  M+++GL+K  G S VE+  + + F  G  +HP++ +IY +L++L+ 
Sbjct: 653 AASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLIC 712

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           + +EAGYVP++   +  LE++ +E  L  HSEKLA++FGL+ T+ G TI + KNLR+C D
Sbjct: 713 QIKEAGYVPDTNLILG-LEDDVKEQLLSSHSEKLAISFGLLNTTAGTTIHVRKNLRVCAD 771

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+A K+IS+ T REIIVRD  RFHHFK G+CSC DYW
Sbjct: 772 CHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 177/314 (56%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           +L+    LK L+ +   +   G  +     TKL+SL C  G +  A R+F  I    + L
Sbjct: 43  LLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVL 102

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           + T++   +K +    +L F+ RM    + P  Y F+ ++K C   + L +G+ +H  + 
Sbjct: 103 YYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLV 162

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            SG+  DL     L N YAK   V  ARKVFDRMP++ +V+WN++++GY QNG A+ A+ 
Sbjct: 163 KSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALE 222

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           + NLM +  + P   T V VL A + L  I +G+ +H + +  G D  V +AT+L++MYA
Sbjct: 223 MVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYA 282

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +CG++  AR +FD M E NV++W +MI  Y  +    EA+ +F +M   GV+P +V+ + 
Sbjct: 283 KCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMG 342

Query: 314 VLSACAHAGLVQEG 327
            L ACA  G ++ G
Sbjct: 343 ALHACADLGDLERG 356



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 206/392 (52%), Gaps = 9/392 (2%)

Query: 12  EAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS 71
           EA L+ G      +++H  L+ +G+      +T L ++      +  A+++F  +P  D 
Sbjct: 148 EAELRVG------KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDL 201

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
             +NT++   S+   +  +L     M   N+ PS  T  +V+ + + L ++ +G+ +H +
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGY 261

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
              +G+DS +++  ALV+ YAK  ++  AR +FD M +++VV+WNSMI  Y QN   KEA
Sbjct: 262 AMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEA 321

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           + +F  M D GV P   + +  L ACA LGD++ GR++H+  V   LD NV +  SLI+M
Sbjct: 322 MVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISM 381

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           Y +C  V  A  +F  +    +++W AMI G+  +G   EA+  F +M+A  V+P+  T+
Sbjct: 382 YCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTY 441

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           V+V++A A   +      +   + +   L   V     +VD++ + G +  A + + D++
Sbjct: 442 VSVITAIAELSITHHAKWIHGVVMRN-CLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMM 499

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
            E+     W AM+     H      +E+ E +
Sbjct: 500 SERHV-TTWNAMIDGYGTHGIGKAALELFEEM 530



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 177/352 (50%), Gaps = 14/352 (3%)

Query: 101 NISPSN---YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
           N  P+N   +  + +++ C+ L  L   R +   +F +G   +   Q  LV+ + +  +V
Sbjct: 29  NYIPANVYEHPAALLLERCSSLKEL---RHILPLIFKNGLYQEHLFQTKLVSLFCRYGSV 85

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
           D A +VF+ +  K  V + +M+ G+ +     +A+  F  MRD  V P       +L  C
Sbjct: 86  DEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVC 145

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
               ++ +G+ +H  +V  G  +++   T L NMYA+C  V +AR++FD M E ++++W 
Sbjct: 146 GDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWN 205

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQ 336
            +++GY  +G    A+E+ + M    ++P+ +T V+VL A +   L++ G  +   +MR 
Sbjct: 206 TIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRA 265

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
            +  L  +     +VD++ + G L  A + + D + E+   + W +M+ A   ++N    
Sbjct: 266 GFDSLVNIA--TALVDMYAKCGSLKTA-RLLFDGMLERNVVS-WNSMIDAYVQNENPKEA 321

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVEVVRNIMIQKGLKKHV 446
           + + + +L  E   P    ++  ++A A  G ++R   +  + ++  L ++V
Sbjct: 322 MVIFQKMLD-EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNV 372


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/528 (44%), Positives = 334/528 (63%), Gaps = 10/528 (1%)

Query: 62  IFFCIPSPDSFLFNTLI-----IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC 116
           + F  P+ +SFL+NTLI      R      +   +  + RM    + P  +TF  +++S 
Sbjct: 15  LHFSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSF 74

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
           A  S+L+LGR+VH  +   G   D  VQ +L++ Y+ S  VD+AR +F  MP+++V++W+
Sbjct: 75  ASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWS 134

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVN---PDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
            MI+GY + G  KEA+ LF  M+  GVN   P+  T   VLAAC +LG ++ G+W H +I
Sbjct: 135 CMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYI 194

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIF-DMMSELNVIAWTAMISGYGMHGYGTEA 292
              G+ V+VVL T+LI+MYA+CG+V KA  +F ++    +V+AW+AMISG  MHG   E 
Sbjct: 195 DKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEEC 254

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           V LF +M   GVRPN VTF+AV  AC H GLV EG      M ++Y ++P ++H+ CMVD
Sbjct: 255 VGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVD 314

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L+GRAG + EA+  VK +  E P   VW A+L   +MH + +      + L+ +EP N G
Sbjct: 315 LYGRAGRIKEAWNVVKSMPME-PDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSG 373

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
            YV+LSN+YA  GR + V  VR++M   G+KK  G S +EV    + F +GD SHP T +
Sbjct: 374 AYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQ 433

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           I+  L+E++ R +  GYV  ++  + +L+EE +E +L  HSEKLALA+G ++TSPG  IR
Sbjct: 434 IHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGTPIR 493

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           IVKNLR+C DCH AIK IS   +REIIVRD  RFHHF +G CSC DYW
Sbjct: 494 IVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/572 (38%), Positives = 351/572 (61%), Gaps = 5/572 (0%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPD 70
           +++K+      L Q+HAH+I     +   +  + L+    A F  + Y++R+F  + +P 
Sbjct: 32  SLIKSCTHKSQLLQIHAHIITTSSIQDPIVSLRFLTRTASAPFRDLGYSRRLFDLLTNPF 91

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
              +N ++   S +    + L  YR M    +     + S  +KSC  L  L  G  +H 
Sbjct: 92  VSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGIQIHA 151

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
            +F++G+ +D  +  ++++ Y+     + A K+FD +P K VVAWN +IS   +N   ++
Sbjct: 152 RIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRD 211

Query: 191 AIGLFNLMRD--FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
           A+GLF +M+   +   PD  TC+ +L ACA L  ++ G  +H +I   G +    L  SL
Sbjct: 212 ALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLCNSL 271

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           I+MY+RCG + KA E+FD M+E NV++W+AMISG  M+G+G EA+E F  M+ +GV P +
Sbjct: 272 ISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGD 331

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
            TF AVLSAC+H GLV EG   F  MRQE+ + P V H+ C+VDL GRAG+L++AY+ + 
Sbjct: 332 HTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIM 391

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
             +  +P   +W  +LGAC++H + +LG  + EHL+ ++ +  G YV+L NIY+ AG  D
Sbjct: 392 S-MEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNWD 450

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
           +V  +R +M +KG+      +T+E++   + F++ D SHP  ++IY+ LDE+  + + AG
Sbjct: 451 KVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEINKQLKIAG 510

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           Y  E  S +H LE +++ Y+L  HSEKLA+AFG++ T PG TIRI  N+R C+DCH+  K
Sbjct: 511 YEAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRTCMDCHNFAK 570

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +IS   NR+++VRDR RFHHF+ G CSC D+W
Sbjct: 571 YISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/584 (41%), Positives = 351/584 (60%), Gaps = 13/584 (2%)

Query: 6   PHSPA----YEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           P SP+    Y ++L++      L+P +Q+HA L   G   +  + TKL++       +  
Sbjct: 52  PSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRN 111

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A  +F  IP  + FL+N LI   +       ++  Y +M+   + P N+T   V+K+C+ 
Sbjct: 112 AHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSA 171

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           LS +  GR +H  V  SG++ D+ V AALV+ YAK   V  AR VFD++ D+  V WNSM
Sbjct: 172 LSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSM 231

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           ++ Y QNG   E++ L   M   GV P   T V V+++ A +  +  GR +H F    G 
Sbjct: 232 LAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGF 291

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             N  + T+LI+MYA+CG+V  A  +F+ + E  V++W A+I+GY MHG   EA++LF R
Sbjct: 292 QYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFER 351

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M     +P+++TFV  L+AC+   L+ EG  ++  M ++  + P VEH+ CMVDL G  G
Sbjct: 352 MMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCG 410

Query: 359 LLNEAYKFVK--DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
            L+EAY  ++  DV+   P   VW A+L +CK H N +L     E L+ +EP++ G+YV+
Sbjct: 411 QLDEAYDLIRQMDVM---PDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVI 467

Query: 417 LSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQY 476
           L+N+YA +G+ + V  +R +MI KG+KK++  S +EV  K Y F  GD SHPN+  IY  
Sbjct: 468 LANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAE 527

Query: 477 LDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKN 536
           L  L G  REAGYVP++ S  H++EE+E+   +  HSE+LA+AFGL+ T PG  + I KN
Sbjct: 528 LKRLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKN 587

Query: 537 LRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           LR+C DCH AIKFIS  T REI VRD  R+HHF+ G CSC DYW
Sbjct: 588 LRICEDCHVAIKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/566 (41%), Positives = 351/566 (62%), Gaps = 4/566 (0%)

Query: 18  GPRLKPLQQVHAHLIVAGYGRSRSMLTK--LLSLVCDAGFITYAQRIFFCIPSPDSFLFN 75
           G     L+Q+HA  I  G         K  + +LV  +  +++A +IF  I +P+ F +N
Sbjct: 45  GSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWN 104

Query: 76  TLIIRNSKA-NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           T+I   +++ N S    LF +    S+I P  +TF  + K+ A L  ++LG  +H  V  
Sbjct: 105 TMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVR 164

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
           +G+DS   VQ +LV+ Y+     + A +VF+ M  +  VAWNS+I+G+  NG   EA+ L
Sbjct: 165 NGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTL 224

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           +  M   GV PD  T V +L+AC +LG + LG  VH ++V  GL  N   + +L+++Y++
Sbjct: 225 YREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSK 284

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CGN   A+++FD M E +V++WT++I G  ++G G EA++LF  +   G++P+ +TFV V
Sbjct: 285 CGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGV 344

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L AC+H G++ EG   F  M++EYG+LP +EHH CMVDL  RAG + +AY ++++ +   
Sbjct: 345 LYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRN-MPVP 403

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P   +W  +LGAC +H + +LG      +  +E  + G +V+LSN+YA   R   V+ VR
Sbjct: 404 PNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVR 463

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
            IM+ KG+KK  GYS VE+  + Y F MGD+SHP + E Y  L ++    +  GYVP + 
Sbjct: 464 KIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTV 523

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
           + + ++EEEE+E +L +H+EK+A+AF L+ T PG  IRI+KNLR+C DCH AIK IS   
Sbjct: 524 NVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVF 583

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
            REIIVRDR RFHHFK GSCSC DYW
Sbjct: 584 EREIIVRDRSRFHHFKDGSCSCKDYW 609


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/573 (38%), Positives = 356/573 (62%), Gaps = 5/573 (0%)

Query: 11  YEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y  +LK     K L Q   VHAH++ + +     M   LL++    G +  A+++F  +P
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             D   + TLI   S+ +   D+LLF+ +M+    SP+ +T S+VIK+ A       G  
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H      G+DS++HV +AL++ Y +   +D A+ VFD +  ++ V+WN++I+G+ +   
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            ++A+ LF  M   G  P   +   +  AC+  G ++ G+WVH +++  G  +      +
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 302

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L++MYA+ G++  AR+IFD +++ +V++W ++++ Y  HG+G EAV  F  MR  G+RPN
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            ++F++VL+AC+H+GL+ EG   +  M+++ G++P   H+V +VDL GRAG LN A +F+
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFI 421

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           +++  E P  A+W A+L AC+MHKN +LG   AEH+  ++P++PG +V+L NIYA  GR 
Sbjct: 422 EEMPIE-PTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRW 480

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           +    VR  M + G+KK    S VE++   ++F   D+ HP   EI +  +E++ + +E 
Sbjct: 481 NDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKEL 540

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           GYVP++   +  ++++ERE +L+YHSEK+ALAF L+ T PG TI I KN+R+C DCH+AI
Sbjct: 541 GYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAI 600

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           K  S    REIIVRD  RFHHFK G+CSC DYW
Sbjct: 601 KLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/587 (40%), Positives = 360/587 (61%), Gaps = 13/587 (2%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P   ++   +KA   L  +   +Q H    V GY     + + L+ +    G +  A+++
Sbjct: 74  PTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKV 133

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTF------SAVIKSC 116
           F  IP  D   + ++I        + D++  ++ ++V      +  F       +VI +C
Sbjct: 134 FDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISAC 193

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN--VDVARKVFDRMPDKSVVA 174
           + +    L  ++H  V   G+D  + V   L++ YAK     V VARK+FD++ DK  V+
Sbjct: 194 SRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS 253

Query: 175 WNSMISGYEQNGFAKEAIGLFN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           +NS++S Y Q+G + EA  +F  L+++  V  ++ T   VL A +  G + +G+ +H+ +
Sbjct: 254 YNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQV 313

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  GL+ +V++ TS+I+MY +CG V  AR+ FD M   NV +WTAMI+GYGMHG+  +A+
Sbjct: 314 IRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKAL 373

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           ELF  M   GVRPN +TFV+VL+AC+HAGL  EG R F +M+  +G+ PG+EH+ CMVDL
Sbjct: 374 ELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDL 433

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GRAG L +AY  ++  +  KP   +W+++L AC++HKN +L       L  ++  N G+
Sbjct: 434 LGRAGFLQKAYDLIQR-MKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGY 492

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           Y++LS+IYA AGR   VE VR IM  +GL K  G+S +E++ + ++F +GD+ HP   +I
Sbjct: 493 YMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKI 552

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           Y++L EL  +  EAGYV  + S  H+++EEE+E +LR HSEKLA+AFG+M T PG T+ +
Sbjct: 553 YEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNV 612

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           VKNLR+C DCH+ IK IS   +RE +VRD  RFHHFK G CSC DYW
Sbjct: 613 VKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 179/334 (53%), Gaps = 12/334 (3%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           +   D F +N++I   +++  S ++LL +  M   ++ P+  +F   IK+C+ L  +  G
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSG 95

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           +  H   FV GY SD+ V +AL+  Y+    ++ ARKVFD +P + +V+W SMI GY+ N
Sbjct: 96  KQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLN 155

Query: 186 GFAKEAIGLFNLM------RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           G A +A+ LF  +       D  +  DS   V V++AC+++    L   +H F++ +G D
Sbjct: 156 GNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFD 215

Query: 240 VNVVLATSLINMYARCGN--VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
             V +  +L++ YA+ G   V+ AR+IFD + + + +++ +++S Y   G   EA E+F 
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFR 275

Query: 298 RMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
           R+  + V   N +T   VL A +H+G ++ G  +   + +  GL   V     ++D++ +
Sbjct: 276 RLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCK 334

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            G +  A K   D +  K   + WTAM+    MH
Sbjct: 335 CGRVETARKAF-DRMKNKNVRS-WTAMIAGYGMH 366


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/605 (40%), Positives = 359/605 (59%), Gaps = 41/605 (6%)

Query: 15  LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSF 72
           L++   +  ++Q HAHLI  G         KLL ++  + F  ++YA ++F  IP PD F
Sbjct: 22  LESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVF 81

Query: 73  LFNTLIIRNSKANFST-DSLLFYRRMI-VSNISPSNYTFSAVIKSCAH-LSILNLGRAVH 129
           ++NT+I  ++    S+ +S+  +  M+ VS   P+ YTF  V K+C + L +L  G  + 
Sbjct: 82  IYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLE-GEQIR 140

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD------------------------ 165
            H    G +S+L V  A++  YA    VD AR+VFD                        
Sbjct: 141 VHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIG 200

Query: 166 -------RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
                   M ++ VV+W ++I+GY Q G  KEA+ LF+ M   G  P+  T    LAACA
Sbjct: 201 RAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACA 260

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF--DMMSELNVIAW 276
            L  +D GRW+H +I    + +N  L  SL++MYA+CG +  A ++F  +   +L V  W
Sbjct: 261 NLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPW 320

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
            AMI GY MHG   EA++LF +M+   V PN VTFVA+L+AC+H  LV+EG   F SM  
Sbjct: 321 NAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMAS 380

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
            YG+ P +EH+ CMVDL GR+GLL EA + V + +   P   +W A+LGAC++HK+ + G
Sbjct: 381 SYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFN-MPMAPDATIWGALLGACRIHKDIERG 439

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQK 456
             + + +  ++ ++ G +V+L+N+Y+ +G+ D  + VR  +   G KK  G S++E++  
Sbjct: 440 QRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGV 499

Query: 457 NYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE-REYSLRYHSEK 515
            + F +GD+SHP T ++Y +LDE+  + + AGYVPE    + ++++EE +E +L  HSEK
Sbjct: 500 FHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEK 559

Query: 516 LALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCS 575
           LA+AFGL+ T PG  IRIVKNLR+C DCH A KFIS    REIIVRDR+R+HHFK G CS
Sbjct: 560 LAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCS 619

Query: 576 CLDYW 580
           C DYW
Sbjct: 620 CKDYW 624


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/530 (44%), Positives = 336/530 (63%), Gaps = 12/530 (2%)

Query: 58  YAQRIFFCIPSPDSFLFNTLI-----IRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSA 111
           YA+ +F  IP P +F +N+LI       +S  + +TD+ L YRRM+   + +P+++T + 
Sbjct: 76  YARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAF 135

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM-PDK 170
           V+K+C   + L  G+ +H   F  G +   +VQ  L+N YA+   V +AR VFD M  DK
Sbjct: 136 VLKAC---TALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDK 192

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH 230
           ++VAW+SMI GY + G   EA+GLF  M+  GVNPD  T V V++ACA+ G +DLG+WVH
Sbjct: 193 NLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVH 252

Query: 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
            FI  +G+ V++ L+T+LI+MYA+CG + +A+ +FD M E +  AW+AMI G  MHG   
Sbjct: 253 AFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAE 312

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350
           +A+ LF RM    VRPNNVTFV VLSACAH+GLV +G R + +M QE G+   +E++ CM
Sbjct: 313 DALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTM-QELGIEASMENYGCM 371

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410
           VDL  R+GLL+EA+ FV   +   P   +W  +L A K     D+    +  L  +EP+N
Sbjct: 372 VDLLCRSGLLDEAFSFVTG-MPISPNSVIWRNLLVASKSSNRIDIVELASRRLFELEPQN 430

Query: 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNT 470
           P +YV+LSN+YAL  + DRV  +R  M    +    G S++E++   + F + D SHP  
Sbjct: 431 PENYVLLSNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIEINGYLHKFVVSDGSHPEI 490

Query: 471 NEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT 530
            +I   L E+  R   AG+ P + + +H++ EEE+E +L  HSE+LA+A+GL++T     
Sbjct: 491 KKIRLVLREIADRVLCAGHKPWTAAVLHDVVEEEKEVALCEHSERLAIAYGLLKTKAPHV 550

Query: 531 IRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           IR+VKNLR C DCH   K IS +  REIIVRDR+RFH F  GSCSC D+W
Sbjct: 551 IRVVKNLRFCPDCHEVTKIISKSYGREIIVRDRVRFHRFIGGSCSCNDFW 600



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 132/257 (51%), Gaps = 1/257 (0%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P+S     +LKA   L   QQ+HA     G   S  + T LL+L      +  A+ +F  
Sbjct: 128 PNSFTLAFVLKACTALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDG 187

Query: 66  IPSPDSFL-FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
           +    + + ++++I   S+     ++L  +R M    ++P   T  +VI +CA    L+L
Sbjct: 188 MVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDL 247

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G+ VH  +   G   DL +  AL++ YAK   ++ A+ VFD M ++   AW++MI G   
Sbjct: 248 GKWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAM 307

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           +G A++A+GLF+ M    V P++ T V VL+ACA  G +D GR     +   G++ ++  
Sbjct: 308 HGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQELGIEASMEN 367

Query: 245 ATSLINMYARCGNVSKA 261
              ++++  R G + +A
Sbjct: 368 YGCMVDLLCRSGLLDEA 384


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/578 (40%), Positives = 354/578 (61%), Gaps = 4/578 (0%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   +  +LKA   L+     + VH  ++   Y     +   LL L    G      R+
Sbjct: 140 PNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRV 199

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P  D   ++ +I R +++N S +++  + +M  + + P+ +TF++V++SCA +  L
Sbjct: 200 FEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENL 259

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            LG+ VHCHV   G D ++ V  AL++ YAK   +D + K+F  +P+++ V WN+MI GY
Sbjct: 260 QLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGY 319

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q+G   +A+ L+  M +  V     T   VL ACA L  ++LG  +H   +    D +V
Sbjct: 320 VQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDV 379

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           V+  +LI+MYA+CG++  AR +FDM+SE + I+W AMISGY MHG   EA++ F  M+  
Sbjct: 380 VVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQET 439

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
              PN +TFV++LSAC++AGL+  G   F SM Q+YG+ P +EH+ CMV L GR+G L++
Sbjct: 440 ECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDK 499

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A K ++++  E P   VW A+LGAC +H + DLG+  A+ +L ++P++   +V+LSNIYA
Sbjct: 500 AVKLIEEIPLE-PNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYA 558

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
              R + V  VR  M  KG+KK  G S +E     + FS+GD SHP+   I   L+ L  
Sbjct: 559 RTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNM 618

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           +  +AGYVP+  + + ++E++E++  L  HSE+LALAFGL+RT     IRI+KNLR+C D
Sbjct: 619 KTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLRICTD 678

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CHSAIK IS    R+II+RD  RFHHF+ G CSC DYW
Sbjct: 679 CHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 195/365 (53%), Gaps = 5/365 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +HA +   G+  +  + T L+      G +  A++ F  I   D   +  ++   ++ + 
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDR 122

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             DSL  +  M +   +P+++TF+ V+K+C  L   ++G++VH  V  + Y+ DL+V   
Sbjct: 123 FQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVG 182

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ Y K  + +   +VF+ MP   V+ W+ MIS Y Q+  ++EA+ LF  MR   V P+
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPN 242

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T   VL +CA + ++ LG+ VH  ++  GLD NV ++ +L+++YA+CG +  + ++F 
Sbjct: 243 QFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFM 302

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            +   N + W  MI GY   G G +A+ L+  M    V+ + VT+ +VL ACA    ++ 
Sbjct: 303 ELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMEL 362

Query: 327 GHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           G ++ + S++  Y     V     ++D++ + G +  A + V D++ E+   + W AM+ 
Sbjct: 363 GTQIHSLSLKTIYD--KDVVVGNALIDMYAKCGSIKNA-RLVFDMLSERDEIS-WNAMIS 418

Query: 386 ACKMH 390
              MH
Sbjct: 419 GYSMH 423



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 162/320 (50%), Gaps = 5/320 (1%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLL-FYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
           +P  ++  F TLI +    +F  D ++  + R+       + + F+ ++K    +    L
Sbjct: 1   MPDRNTVSFVTLI-QGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAEL 59

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
             ++H  ++  G++S+  V  AL++ YA   +V+ AR+ FD +  K +V+W  M++ Y +
Sbjct: 60  AYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAE 119

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           N   ++++ LF  MR  G NP+  T   VL AC  L    +G+ VH  ++    ++++ +
Sbjct: 120 NDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYV 179

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
              L+++Y + G+ +    +F+ M + +VI W+ MIS Y       EAVELF +MR   V
Sbjct: 180 GVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFV 239

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
            PN  TF +VL +CA    +Q G +V   + +  GL   V     ++D++ + G L+ + 
Sbjct: 240 LPNQFTFASVLQSCASIENLQLGKQVHCHVLK-VGLDGNVFVSNALMDVYAKCGRLDNSM 298

Query: 365 KFVKDVIGEKPAPAVWTAML 384
           K   ++         W  M+
Sbjct: 299 KLFMELPNRN--EVTWNTMI 316


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/556 (39%), Positives = 343/556 (61%), Gaps = 4/556 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH  ++  G+G    +   L+ +    G I  A  +F  +   D   +  +I    +A  
Sbjct: 154 VHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAER 213

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
              +L+ +R+M          T  +V  +   L    +  +VH +  ++G+  D+ V  +
Sbjct: 214 PLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNS 273

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           +V  YAK  NV+ AR VFDRM +++ ++WNSM+SGY QNG   +A+ LFN M+    +P+
Sbjct: 274 IVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPN 333

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T + +++AC+ LG   LGR +H F++   +D++  L  ++++MY +CG++  A E+F+
Sbjct: 334 PVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFN 393

Query: 267 --MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
              + E +V +W  +ISGYG+HG+G EA+ELF RM+  GV PN++TF ++LSAC+HAGL+
Sbjct: 394 NCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLI 453

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG + FA M +   + P ++H+ CMVD+ GRAG LNEA++ +K  I  +P+  VW A+L
Sbjct: 454 DEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKK-IPSRPSDEVWGALL 511

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            AC++H N +LG   A +L  +EPE+ G+YV++SNIYA + +   VE+VR  M  +GLKK
Sbjct: 512 LACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKK 571

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
              +S +E   + + F   D+S P   E+Y+ ++ L    +  GYVP+    +H++E E+
Sbjct: 572 PAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPED 631

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E+ L YHSEKLA+AFG+M+   GM I++ KNLR+C DCH A KFIS    R+IIVRD  
Sbjct: 632 KEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGN 691

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF+ G CSC DYW
Sbjct: 692 RFHHFQGGRCSCGDYW 707



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/425 (30%), Positives = 218/425 (51%), Gaps = 24/425 (5%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYG-RSRSMLTKLLSLVCDAGFITYAQRIF------ 63
           Y+ +L+    L  L+ +H+ L   G+   +   L +L+ L    G +  A+ +F      
Sbjct: 28  YDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHH 87

Query: 64  --FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
                 +P+SFL NT++   + A  S +++  Y  M    +  +N+T+  V+K CA    
Sbjct: 88  HHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELG 147

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
              G  VH  V  +G+ SDL V+AALV+ YAK   +  A +VFDRM  + VV W +MI+ 
Sbjct: 148 AVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITL 207

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           YEQ     +A+ LF  M++ G   D  T + V +A  QLGD  +   VH + V  G   +
Sbjct: 208 YEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGD 267

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V +  S++ MYA+CGNV +AR +FD M E N I+W +M+SGY  +G  T+A+ LF++M+A
Sbjct: 268 VSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQA 327

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHR-----VFASMRQEYGLLPGVEHHVCMVDLFGR 356
               PN VT + ++SAC++ G    G +     + + M  +  L   +      +D++ +
Sbjct: 328 SECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAI------MDMYMK 381

Query: 357 AGLLNEAYKFVKDV-IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SVEPENPGH 413
            G L+ A +   +  +GE+   + W  ++    +H +    +E+   +    VEP +   
Sbjct: 382 CGDLDTAVEMFNNCELGERDVSS-WNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITF 440

Query: 414 YVMLS 418
             +LS
Sbjct: 441 TSILS 445


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/579 (38%), Positives = 357/579 (61%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    Y  +L     L+ L+Q   +HAH+  + +     +L  +L++    G +  AQ 
Sbjct: 102 EPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQD 161

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P+ D   +  LI   S++  ++++L  + +M+     P+ +T S+++K+      
Sbjct: 162 LFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPS 221

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
            + GR +H      GYD ++HV ++L++ YA+  ++  A+ +F+ +  K+VV+WN++I+G
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAG 281

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + + G  +  + LF  M   G  P   T   V  ACA  G ++ G+WVH  ++  G    
Sbjct: 282 HARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPI 341

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +  +LI+MYA+ G++  A+++F  + + ++++W ++ISGY  HG G EA++LF +M  
Sbjct: 342 AYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLK 401

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             V+PN +TF++VL+AC+H+GL+ EG   F  M++ + +   V HHV +VDL GRAG LN
Sbjct: 402 AKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLN 460

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA KF+++ +  KP  AVW A+LG+C+MHKN DLGV  AE +  ++P + G +V+LSNIY
Sbjct: 461 EANKFIEE-MPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIY 519

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AGR+     VR +M + G+KK    S VE++ + ++F   D SHP   EI +  +++ 
Sbjct: 520 ASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKIS 579

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
           G+ +E GYVP++   +  + +++RE  L+YHSEKLALAF +++T PG+TIRI KN+R+C 
Sbjct: 580 GKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICG 639

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSA KF S    REIIVRD  RFHHF  G CSC DYW
Sbjct: 640 DCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 188/356 (52%), Gaps = 6/356 (1%)

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
           ++ P    +S ++  C +L  L  GRA+H H+  S ++ DL +   ++N YAK  +++ A
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEA 159

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
           + +FD+MP K +V+W  +ISGY Q+G A EA+ LF  M   G  P+  T   +L A    
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
                GR +H F +  G D+NV + +SL++MYAR  ++ +A+ IF+ ++  NV++W A+I
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +G+   G G   + LF +M   G  P + T+ +V +ACA +G +++G  V A + +  G 
Sbjct: 280 AGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGG- 338

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P       ++D++ ++G + +A K  + ++  K     W +++     H      +++ 
Sbjct: 339 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLV--KQDIVSWNSIISGYAQHGLGAEALQLF 396

Query: 401 EHLLSVEPENPGHYVMLSNIYAL--AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           E +L  + + P     LS + A   +G +D  +    +M +  ++  V +    VD
Sbjct: 397 EQMLKAKVQ-PNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVD 451


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/607 (37%), Positives = 339/607 (55%), Gaps = 51/607 (8%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFLFNTLIIRN 81
           L+Q+H+  I  G   +  +  K+LS  C   F  + YA+++F  IP P  F +N +    
Sbjct: 30  LKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGY 89

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           S+       +  Y  M+  N+ P  YT+  + K       L LGR +HCHV   G DS++
Sbjct: 90  SRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNV 149

Query: 142 HVQAALVNFYA------------------------------------------------K 153
               AL+N Y+                                                 
Sbjct: 150 FAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVN 209

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
           +  VD ARK F +MP++  V+W +MI GY +    KEA+ LF  M+   + PD  T V V
Sbjct: 210 TGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSV 269

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           L ACAQLG ++LG W+  +I    +  +  +  +LI+MY +CGNV  A  IF+ + + + 
Sbjct: 270 LTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDK 329

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
             WTAM+ G  ++G G EA+ +F +M    V P+ VT+V VLSAC H G+V EG + FAS
Sbjct: 330 FTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFAS 389

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
           M   +G+ P + H+ CMVDL G+AG L EA++ +K+ +  KP   VW A+LGAC++HK+ 
Sbjct: 390 MTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKN-MPMKPNSIVWGALLGACRIHKDA 448

Query: 394 DLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEV 453
           ++     E +L +EP N   YV+  NIYA   + D++  +R +M+ +G+KK  G S +E+
Sbjct: 449 EMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEM 508

Query: 454 DQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHS 513
           +   + F  GD+SHP T EIY  L+++    + AGY P +     ++ EE++E ++  HS
Sbjct: 509 NGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHS 568

Query: 514 EKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGS 573
           EKLA+AFGL+ + PG+TIRIVKNLRMC+DCH   K +S   +RE+IVRDR RFHHF+ GS
Sbjct: 569 EKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGS 628

Query: 574 CSCLDYW 580
           CSC DYW
Sbjct: 629 CSCKDYW 635


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/634 (38%), Positives = 365/634 (57%), Gaps = 67/634 (10%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLS--LVCD-AGFITYAQRIFFCIPSP 69
           ++L+   +L  + Q+HA +I      +  +L KLL     C  A  + YA+ +F  IPSP
Sbjct: 8   SLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSP 67

Query: 70  DSFLFNTLIIRNSKANFSTDSL-LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
           D+F++NT+I     +    +S+ LF++      I   +Y+ S VI++C  L     G+ +
Sbjct: 68  DTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKL 127

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV------------------------- 163
           H  V   G  SDL V+ AL+  YAK  ++++AR +                         
Sbjct: 128 HTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEI 187

Query: 164 ------FDRMPDKSVVAWNSMISGYEQNG--------------------------FAK-- 189
                 FDRMP++ +V+WN+MI G+   G                          +AK  
Sbjct: 188 NLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKAR 247

Query: 190 ---EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
              EA+ LF+ M+   V PD  T V VL+AC  +G + +G+ +HE I    +++++ L T
Sbjct: 248 QSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGT 307

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           SL++MYA+CG++  +  +F+ M+  +V AW+AMI G   HG+G  A++ F +M +  ++P
Sbjct: 308 SLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKP 367

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           N+VTF+ VLSAC+H GLV EG   F SM + Y + P +EH+ C+VD+ GRAG L EA + 
Sbjct: 368 NDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMEL 427

Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
           +K  +   P   VW A+LGAC+++KN ++  E   +LL +EP   G+YV+LSNIY+ A  
Sbjct: 428 IKS-MPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKE 486

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE 486
            D+V  VR +M    ++K  G S++EVD   + F  GD+SHP + +I + L E+  R + 
Sbjct: 487 WDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKA 546

Query: 487 AGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSA 546
            GY P + S + + +E+E+E +L +HSEKLA+AFGL+ T+PG TIRIVKNLR+C DCH A
Sbjct: 547 NGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIA 606

Query: 547 IKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           IK IS    R IIVRDR RFHHF  GSCSC DYW
Sbjct: 607 IKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/611 (38%), Positives = 352/611 (57%), Gaps = 37/611 (6%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+S  +  ++KA   +  L   Q +H  ++ A +G    +   L+      G +  A  +
Sbjct: 129 PNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLV 188

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  I   D   +N++I    +     ++L  ++RM + N  P+  T   V+ +CA    L
Sbjct: 189 FSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDL 248

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFY------------------------------- 151
             GR    ++  +G D +L +  A+++ Y                               
Sbjct: 249 EFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGY 308

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTC 210
           AK  + D AR+VFD MP + + AWN++IS Y+QNG  KEA+ +F  L  +    P+  T 
Sbjct: 309 AKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTL 368

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
              LAACAQLG +DLG W+H +I  QG+ +N  + TSLI+MY++CG++ KA E+F  +  
Sbjct: 369 ASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVER 428

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            +V  W+AMI+G  MHG+G  A++LF +M+   V+PN VTF  +L AC+H+GLV EG   
Sbjct: 429 RDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLF 488

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           F  MR  YG++PG +H+ CMVD+ GRAG L EA + ++  +   P+ +VW A+LGAC+++
Sbjct: 489 FNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEK-MPIVPSASVWGALLGACRIY 547

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
            N +L       LL  +  N G YV+LSNIYA AG+ D V  +R  M   GL+K  G S+
Sbjct: 548 GNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSS 607

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE-EREYSL 509
           +EV+   + F +GD SHP + EIY  LDE++ R +  GYV +    +  +EEE  +E++L
Sbjct: 608 IEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHAL 667

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
             HSEKLA+A+GL+R  P   IRIVKNLR+C DCHS  K IS   NR+I++RDR RFHHF
Sbjct: 668 NLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHF 727

Query: 570 KRGSCSCLDYW 580
             G+CSC+DYW
Sbjct: 728 SGGNCSCMDYW 738



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 222/424 (52%), Gaps = 39/424 (9%)

Query: 3   NKQPHSPAYEAIL-KAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYA 59
           N+Q  +P+   IL       K L+Q+HAH++  G        TKL +   +     + YA
Sbjct: 24  NEQKSNPSTVPILIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYA 83

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAH 118
            ++F  IP P+ + +NTLI   + +      LL + +M+  S   P++YTF  VIK+   
Sbjct: 84  CKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATE 143

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           +S L  G+A+H  V  + + SDL +  +L++FY+   ++D A  VF ++ +K +V+WNSM
Sbjct: 144 VSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSM 203

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           ISG+ Q G  +EA+ LF  M+     P+  T V VL+ACA+  D++ GRW  ++I   G+
Sbjct: 204 ISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGI 263

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG-------------- 284
           D+N++L+ ++++MY +CG++  AR +FD M E ++++WT MI GY               
Sbjct: 264 DINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDV 323

Query: 285 -----------------MHGYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHAGLVQE 326
                             +G   EA+ +F  ++ +   +PN VT  + L+ACA  G +  
Sbjct: 324 MPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDL 383

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G  +   ++++ G+         ++D++ + G L +A +    V  E+    VW+AM+  
Sbjct: 384 GGWIHVYIKKQ-GIKLNFHITTSLIDMYSKCGHLEKALEVFYSV--ERRDVFVWSAMIAG 440

Query: 387 CKMH 390
             MH
Sbjct: 441 LAMH 444



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 33/183 (18%), Positives = 83/183 (45%), Gaps = 5/183 (2%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           KN +P+     + L A  +L  +     +H ++   G   +  + T L+ +    G +  
Sbjct: 359 KNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEK 418

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A  +F+ +   D F+++ +I   +       ++  + +M  + + P+  TF+ ++ +C+H
Sbjct: 419 ALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSH 478

Query: 119 LSILNLGRAVHCHVF-VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-KSVVAWN 176
             +++ GR     +  V G        A +V+   ++  ++ A ++ ++MP   S   W 
Sbjct: 479 SGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWG 538

Query: 177 SMI 179
           +++
Sbjct: 539 ALL 541


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/557 (43%), Positives = 332/557 (59%), Gaps = 6/557 (1%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF--LFNTLIIRNSK 83
           Q+H H+I  G      + T L+S+ C    I  A+++F       +    +N LI   S 
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSL 136

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
            +  +D++L +R+M    +S +  T   +I  CA    L  G ++H      G D DL V
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSV 196

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
              L+  Y +  +VD ARK+FD MP+K ++ WN+MISGY QNG A   + L+  M   G+
Sbjct: 197 GNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGI 256

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            PD  T V VL++CA LG    GR V + I   G   N  L  +LINMYARCGN+ KAR 
Sbjct: 257 VPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARA 316

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           IFD M+E NVI+WTA+I+GYGMHG G  AV+LF  M +    P+   FV+VLSAC+HAGL
Sbjct: 317 IFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGL 376

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
            ++G   F +M ++YGL PG EH+ C+VDL GRAG L EA K +  +  E P  AVW A+
Sbjct: 377 TEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVE-PDGAVWGAL 435

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           LGACK+H+N +L     E ++  EP N G+YV+LSNI++ AG M+ +  VR +M ++ LK
Sbjct: 436 LGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLK 495

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K  G S VE   + +LF  GD++HP   EIY  LD L    +  G   +++    E   E
Sbjct: 496 KEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDND---QESRNE 552

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
           E    +  HSEKLA+AFGL+ T PG  I ++KNLR+C DCH  +K +S   +R+++VRD 
Sbjct: 553 ELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDA 612

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFHHFK G CSC DYW
Sbjct: 613 TRFHHFKNGVCSCKDYW 629



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 182/335 (54%), Gaps = 9/335 (2%)

Query: 89  DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
           ++L  Y +M+ S  SP+ +TF    KSCA LS+   G  +H HV  +G + +  VQ +L+
Sbjct: 39  EALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLI 98

Query: 149 NFYAKSNNVDVARKVFDR--MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           + Y K + +  ARKVFD         V +N++I+GY  N    +A+ LF  MR  GV+ +
Sbjct: 99  SMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVN 158

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
           + T + ++  CA    +  G  +H   V  GLD ++ +   L+ MY RCG+V  AR++FD
Sbjct: 159 AVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFD 218

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M E  +I W AMISGY  +G     ++L+ +M   G+ P+ VT V VLS+CAH G    
Sbjct: 219 GMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAA 278

Query: 327 GHRVFASMR-QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           G  V   +    +G  P +++   +++++ R G L +A + + D + EK   + WTA++ 
Sbjct: 279 GREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKA-RAIFDGMTEKNVIS-WTAIIA 334

Query: 386 ACKMHKNFDLGVEVAEHLLSVE--PENPGHYVMLS 418
              MH   +L V++ + ++S +  P+      +LS
Sbjct: 335 GYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLS 369



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 11/219 (5%)

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH 230
           +  +WN+ +    +    +EA+ L+  M   G +P++ T      +CA L     G  +H
Sbjct: 20  TTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLH 79

Query: 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM--MSELNVIAWTAMISGYGMHGY 288
             ++  G +    + TSLI+MY +C  ++ AR++FD    S    + + A+I+GY ++  
Sbjct: 80  GHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSR 139

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACA---HAGLVQEGHRVFASMRQEYGLLPGVE 345
            ++AV LF +MR  GV  N VT + ++  CA   H G     H    S+R  +GL   + 
Sbjct: 140 FSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHA--CSVR--FGLDGDLS 195

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
              C++ ++ R G ++ A K   D + EK     W AM+
Sbjct: 196 VGNCLLTMYVRCGSVDFARKLF-DGMPEK-GLITWNAMI 232


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/600 (37%), Positives = 350/600 (58%), Gaps = 36/600 (6%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
           ++L A    +   ++HA ++  G    R++  +L      +G + ++  +      P + 
Sbjct: 29  SLLAACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTI 88

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
            + + I  +S        L     M+   + P+ +T SA + +C  LS   LGRA+H + 
Sbjct: 89  FYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGLS---LGRALHAYA 145

Query: 133 FVSGYDSDLHVQAALVNFY-------------------------------AKSNNVDVAR 161
           F      D +V  AL++ Y                               A    +D AR
Sbjct: 146 FKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDAR 205

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           ++FD +P K  + WN+MI GY Q+G   EA+ LF  M      PD  T V VL+A AQLG
Sbjct: 206 RLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLG 265

Query: 222 DIDLGRWVHEFIV-GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
            ++ G+W+H ++   + + +NV +AT+L++MY +CG++  A  +F  +   +++ W AMI
Sbjct: 266 TVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMI 325

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GY MHG   +A+E+F ++R  G+ P ++TF+ +L+AC+H+GLV+EG   F SM  EYG+
Sbjct: 326 NGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGI 385

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P +EH+ CMVDL GRAGL+ EA+  V+ +    P   +W ++L AC++HKN  LG  +A
Sbjct: 386 DPKIEHYGCMVDLLGRAGLIEEAFHLVQSLT-ITPDAVMWVSLLAACRLHKNMALGQRIA 444

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           + L++    N G Y++LSNIYA  G+ + V  VR++M   G++K  G S +E+D+K Y F
Sbjct: 445 DFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEF 504

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
             GD SHP T+EIY  LD++    +E G+VP++E  +H+L+E  +E +L  HSEKLA+AF
Sbjct: 505 VAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAF 564

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+ + PG TI+IVKNLR C DCH+ +K IS  T+R+I+ RDR RFHHF  GSC+C DYW
Sbjct: 565 GLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/593 (40%), Positives = 358/593 (60%), Gaps = 16/593 (2%)

Query: 1   MKNKQPHS--PAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           M+   P S  P  + +L+    L  L+QVHAH+I  G       L+++L L+      T+
Sbjct: 1   MRGPNPSSNHPTLQ-LLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRIL-LISSTIVFTH 58

Query: 59  AQRIFFCIPSPDSFLFNTLI--IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC 116
           A  IF  IP+P  FL+NTLI  + N K +      L+ R +  + + P+ +TF ++ K+C
Sbjct: 59  ALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKAC 118

Query: 117 AHLSILNLGRAVHCHVF-VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
                L  GRA+H HV        D  VQAAL+N+YAK   V   R +F+++    + +W
Sbjct: 119 GSQPWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASW 178

Query: 176 NSMISGYEQNG--------FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
           NS++S Y  N          + E + LF  M+   +  +  T V +++ACA+LG +  G 
Sbjct: 179 NSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGA 238

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
           W H +++   L +N  + T+LI+MY++CG +  A ++FD +   + + + AMI G+ +HG
Sbjct: 239 WAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHG 298

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
           YG +A++LF +M   G+ P++VT V  + +C+H GLV+EG  VF SM++ YG+ P +EH+
Sbjct: 299 YGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHY 358

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
            C+VDL GRAG L EA + V + +  KP   +W ++LGA ++H N ++G  V +HL+ +E
Sbjct: 359 GCLVDLLGRAGRLREAEERVLN-MPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLE 417

Query: 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSH 467
           PE  G+YV+LSN+YA   R D V+ VR +M   G+ K  G S VEV    + F MGDK+H
Sbjct: 418 PETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTH 477

Query: 468 PNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSP 527
           P + EIY  L+E+  R  E G+ P +   + ++EEEE+E +L YHSE+LA+AF L+ +  
Sbjct: 478 PRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHH 537

Query: 528 GMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
              IRI+KNLR+C DCH++ K IS    REIIVRDR RFHHFK G+CSC DYW
Sbjct: 538 CAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/545 (42%), Positives = 334/545 (61%), Gaps = 3/545 (0%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           R     T L++     G +  A+R+F  IP  D   +N +I    ++    ++++ +  M
Sbjct: 195 RDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEM 254

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
             +N+ P+  T   V+ +C H     LG+ +   V  +G+ S+L +  AL++ Y K    
Sbjct: 255 QEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGET 314

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
           D+AR++FD + +K V++WN+MI GY      +EA+ LF +M    V P+  T + +L AC
Sbjct: 315 DIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHAC 374

Query: 218 AQLGDIDLGRWVHEFIVGQGLDV-NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           A LG +DLG+WVH +I     +  N  L TSLI+MYA+CG +  A  +F  M   N+ +W
Sbjct: 375 ACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASW 434

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGV-RPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
            AM+SG+ MHG+   A+ LF  M   G+ RP+++TFV VLSAC  AGLV  GH+ F SM 
Sbjct: 435 NAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMI 494

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
           Q+YG+ P ++H+ CM+DL  RA    EA   +K++  E P  A+W ++L ACK H   + 
Sbjct: 495 QDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEME-PDGAIWGSLLSACKAHGRVEF 553

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
           G  VAE L  +EPEN G +V+LSNIYA AGR D V  +R  +  KG+KK  G +++E+D 
Sbjct: 554 GEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDG 613

Query: 456 KNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEK 515
             + F +GDK HP  N IY+ L+E+     E G+VP +   +++++EE +E +L  HSEK
Sbjct: 614 DVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALSQHSEK 673

Query: 516 LALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCS 575
           LA++FGL++T PG TIRIVKNLR+C +CHSA K IS   NREII RDR RFHHFK G CS
Sbjct: 674 LAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGFCS 733

Query: 576 CLDYW 580
           C D W
Sbjct: 734 CNDCW 738



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 199/416 (47%), Gaps = 38/416 (9%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCIPS 68
           Y  +L+    +   +Q+H+ +I  G   +  + +KL+    V  +G ++YA  +F     
Sbjct: 31  YLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQ 90

Query: 69  P---DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
               + F++N+LI   S ++    SL  + RM+   + P+++TF  + KSC      + G
Sbjct: 91  HHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEG 150

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR------------------- 166
           + +H H        + HV  ++++ YA    +D AR VFD+                   
Sbjct: 151 KQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQ 210

Query: 167 ------------MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
                       +P K VV+WN+MISGY Q+G  +EAI  F  M++  V P+ +T V VL
Sbjct: 211 GCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVL 270

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
           +AC      +LG+W+  ++   G   N+ L  +LI+MY +CG    ARE+FD + E +VI
Sbjct: 271 SACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVI 330

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
           +W  MI GY       EA+ LF  M    V+PN+VTF+ +L ACA  G +  G  V A +
Sbjct: 331 SWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYI 390

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            +             ++D++ + G +  A +  + +     A   W AML    MH
Sbjct: 391 DKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLAS--WNAMLSGFAMH 444



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 154/304 (50%), Gaps = 13/304 (4%)

Query: 35  GYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFY 94
           G+G +  +   L+ + C  G    A+ +F  I   D   +NT+I   S  +   ++L  +
Sbjct: 293 GFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALF 352

Query: 95  RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLHVQAALVNFYAK 153
             M+ SN+ P++ TF  ++ +CA L  L+LG+ VH ++  +  + S+  +  +L++ YAK
Sbjct: 353 EVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAK 412

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV-NPDSTTCVC 212
              ++ A +VF  M  +++ +WN+M+SG+  +G A+ A+ LF+ M + G+  PD  T V 
Sbjct: 413 CGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVG 472

Query: 213 VLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF-DMMSE 270
           VL+AC Q G +DLG ++    I   G+   +     +I++ AR     +A  +  +M  E
Sbjct: 473 VLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEME 532

Query: 271 LNVIAWTAMISGYGMHG---YGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQE 326
            +   W +++S    HG   +G    E     R   + P N   FV + +  A AG   +
Sbjct: 533 PDGAIWGSLLSACKAHGRVEFGEYVAE-----RLFQLEPENAGAFVLLSNIYAGAGRWDD 587

Query: 327 GHRV 330
             R+
Sbjct: 588 VARI 591


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/579 (38%), Positives = 358/579 (61%), Gaps = 6/579 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    Y  +L     L+ L+Q   +HAH+  + +     +L  +L++    G +  AQ 
Sbjct: 102 EPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQD 161

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P+ D   +  LI   S++  ++++L  + +M+     P+ +T S+++K+      
Sbjct: 162 LFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPS 221

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
            + GR +H      GYD ++HV ++L++ YA+  ++  A+ +F+ +  K+VV+WN++I+G
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAG 281

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + + G  +  + LF  M   G  P   T   VLA CA  G ++ G+WVH  ++  G    
Sbjct: 282 HARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLA-CASSGSLEQGKWVHAHVIKSGGQPI 340

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +  +LI+MYA+ G++  A+++F  + + ++++W ++ISGY  HG G EA++LF +M  
Sbjct: 341 AYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLK 400

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             V+PN +TF++VL+AC+H+GL+ EG   F  M++ + +   V HHV +VDL GRAG LN
Sbjct: 401 AKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLN 459

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA KF+++ +  KP  AVW A+LGAC+MHKN DLGV  AE +  ++P + G +V+LSNIY
Sbjct: 460 EANKFIEE-MPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIY 518

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AGR+     VR +M + G+KK    S VE++ + ++F   D SHP   EI +  +++ 
Sbjct: 519 ASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKIS 578

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
           G+ +E GYVP++   +  + +++RE  L+YHSEKLALAF +++T PG+TIRI KN+R+C 
Sbjct: 579 GKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICG 638

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSA KF S    REIIVRD  RFHHF  G CSC DYW
Sbjct: 639 DCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 188/356 (52%), Gaps = 7/356 (1%)

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
           ++ P    +S ++  C +L  L  GRA+H H+  S ++ DL +   ++N YAK  +++ A
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEA 159

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
           + +FD+MP K +V+W  +ISGY Q+G A EA+ LF  M   G  P+  T   +L A    
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
                GR +H F +  G D+NV + +SL++MYAR  ++ +A+ IF+ ++  NV++W A+I
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +G+   G G   + LF +M   G  P + T+ +VL ACA +G +++G  V A + +  G 
Sbjct: 280 AGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGG- 337

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P       ++D++ ++G + +A K  + ++  K     W +++     H      +++ 
Sbjct: 338 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLV--KQDIVSWNSIISGYAQHGLGAEALQLF 395

Query: 401 EHLLSVEPENPGHYVMLSNIYAL--AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           E +L  + + P     LS + A   +G +D  +    +M +  ++  V +    VD
Sbjct: 396 EQMLKAKVQ-PNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVD 450


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/588 (39%), Positives = 362/588 (61%), Gaps = 10/588 (1%)

Query: 2   KNKQPHSPAYEA-ILKAGPR--LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           +   P    YE  IL  G R  L    +VH H++  G  +   + TKL+ +  D G + Y
Sbjct: 71  QESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDY 130

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA- 117
           A+++F        +++N L    + A    + L  Y +M    +    +T++ V+K+C  
Sbjct: 131 ARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVA 190

Query: 118 ---HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
               ++ L  G+ +H H+   GY S +++   LV+ YA+   VD A  VF  MP ++VV+
Sbjct: 191 SECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVS 250

Query: 175 WNSMISGYEQNGFAKEAIGLF-NLMRDF-GVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           W++MI+ Y +NG A EA+  F  +MR+    +P+S T V VL ACA L  ++ G+ +H +
Sbjct: 251 WSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGY 310

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           I+ +GLD  + + ++L+ MY RCG +   + +FD M + +V++W ++IS YG+HGYG +A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKA 370

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           +++F  M A+G  P  VTFV+VL AC+H GLV+EG R+F +M +++G+ P +EH+ CMVD
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVD 430

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L GRA  L+EA K V+D+  E P P VW ++LG+C++H N +L    +  L ++EP+N G
Sbjct: 431 LLGRANRLDEAAKMVQDMRTE-PGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAG 489

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
           +YV+L++IYA A   D V+ V+ ++  +GL+K  G   +EV +K Y F   D+ +P   +
Sbjct: 490 NYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQ 549

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           I+ +L +L    +E GY+P+++  ++ELE EE+E  +  HSEKLALAFGL+ TS G  IR
Sbjct: 550 IHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIR 609

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           I KNLR+C DCH   KFIS    +EI+VRD  RFH FK G CSC DYW
Sbjct: 610 ITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/554 (40%), Positives = 336/554 (60%), Gaps = 1/554 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           V A+    G+   + +L  L+ +    G +  A  +F  +       +N +I    K   
Sbjct: 193 VQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGD 252

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             + +  ++ M+         T  +V  +C  L   NLG+ +  +    G     ++  A
Sbjct: 253 WKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATA 312

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           LV+ YAK   +D AR++FDRM  + VVAW++MISGY Q+   +EA+ +FN M+   VNP+
Sbjct: 313 LVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPN 372

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T V VL+ACA LG ++ G+WVH +I  + L + V+L T+L++ YA+CG +  A + F+
Sbjct: 373 DVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFE 432

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M   N   WTA+I G   +G   EA+ELF  M    + P +VTF+ VL AC+H  LV+E
Sbjct: 433 SMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEE 492

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G R F SM Q+YG+ P +EH+ CMVDL GRAGL++EAY+F++++  E P   VW A+L A
Sbjct: 493 GRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIE-PNAVVWRALLSA 551

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C +HKN ++G E  + ++ ++P + G+Y++LSN YA  G+     +VR  M +KG++K  
Sbjct: 552 CTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIP 611

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
           G S +E++   + F   D  HP   EIY+ + E++   +  GY+P +  A  +++E E++
Sbjct: 612 GCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQ 671

Query: 507 YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
            S+ +HSEKLA+AFGLM++ PG TIR+ KNLR+C+DCHSA K IS   NREIIVRDR RF
Sbjct: 672 VSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRF 731

Query: 567 HHFKRGSCSCLDYW 580
           HHFK G CSC DYW
Sbjct: 732 HHFKDGLCSCNDYW 745



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 128/384 (33%), Positives = 206/384 (53%), Gaps = 17/384 (4%)

Query: 8   SPAYEAILKAGPRLKPLQQVHAHLIVAGYG-------RSRSMLTKLLSLVCDAGFITYAQ 60
           SPA +   +A   L+ + Q+HA L+ +G          S      L +    +  ++YA 
Sbjct: 65  SPARQTPRRAA--LRDVPQLHATLLKSGAMTTSPDSFHSLLEAAALPAPATSSAHLSYAI 122

Query: 61  RIFFCIPSP--DSFLFNTLIIRNSKANFSTDSL-LFYRRMIVSNISPSNYTFSAVIKSCA 117
           R+F   P P   +  +N LI    +A    D+L LF   +  + +SP  +T +  +KSC+
Sbjct: 123 RLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCS 182

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            +  L++GR V  + F  G+  D  V  +L++ YA   +V  A  +F  +  K V+AWN+
Sbjct: 183 RMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNA 242

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           MI+GY +NG  KE + +F  M +     D  T + V  AC +LGD +LG+W+ E+   +G
Sbjct: 243 MIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKG 302

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           +  +  LAT+L++MYA+CG + KAR +FD M   +V+AW+AMISGY       EA+ +F+
Sbjct: 303 MLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFN 362

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
            M+   V PN+VT V+VLSACA  G ++ G  V + +R++  L   V     +VD + + 
Sbjct: 363 EMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRK-DLPLTVILGTALVDFYAKC 421

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWT 381
           G + +A K  + +    P    WT
Sbjct: 422 GCIKDAVKAFESM----PVRNTWT 441


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/581 (40%), Positives = 350/581 (60%), Gaps = 11/581 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP +  +  I+KA   L+  +   ++H  ++  GY     +   L+++         +++
Sbjct: 7   QPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQ 66

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  ++  ++ +I    + +   +    +R+M+     PS     A++ + A +  
Sbjct: 67  VFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSR---GAILNAMACVRS 123

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
                 V+  V  +G D D  VQ+A    +A+   V+VARK+FD +  K +V W + I  
Sbjct: 124 HEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEA 183

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y +     EA+GL   M   G+ PD+ T + V+ AC+ L    L   VH  I+  G   N
Sbjct: 184 YVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHG-IITTGFFYN 242

Query: 242 VVLA--TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            +LA  T+LI++Y +CG+++ AR++FD M E N+I W+AMISGYGMHG+G EA+ LF +M
Sbjct: 243 QLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQM 302

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
           +A  V+P+++TFV++LSAC+H+GLV EG   F SM +++G+ P  EH+ CMVD+ GRAG 
Sbjct: 303 KA-SVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGK 361

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L+EA  F++  +  +P  AVW A+LGAC++H N DL   VA  L  ++P N G YV+L N
Sbjct: 362 LDEACDFIER-MPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYN 420

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           IY L G+    + +R +M  +G+KK  GYS +E+  K Y F  GD+SHP T+ IY  L+ 
Sbjct: 421 IYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELER 480

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           LM R R+ GY P+    +H+++EE +E  L  HSEKLA+ FGL+   PG  IRI KNLR+
Sbjct: 481 LMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRV 540

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCH+A KFIS  T REI+VRD  RFHHFK G+CSC DYW
Sbjct: 541 CGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 143/296 (48%), Gaps = 9/296 (3%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M+   I P N+TF  +IK+C+ L     G  +H  V   GY S + +  +L+  Y K + 
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
            +++R+VFD MPDK+ V+W+++I    Q+   KE   LF  M   G  P     +  +A 
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMAC 120

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
                + D    V+  +V  GLD +  + ++   M+ARCG V  AR++FD +   +++ W
Sbjct: 121 VRSHEEADD---VYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTW 177

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
              I  Y       EA+ L  +M   G+ P+ +T + V+ AC+     Q  H V   +  
Sbjct: 178 ATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITT 237

Query: 337 E--YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
              Y  L  VE    ++DL+ + G L  A K V D + E+     W+AM+    MH
Sbjct: 238 GFFYNQLLAVE--TALIDLYVKCGSLTYARK-VFDGMQERNI-ITWSAMISGYGMH 289


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/561 (41%), Positives = 353/561 (62%), Gaps = 8/561 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSM--LTKLLSL--VCDAGFITYAQRIFFCIPSPDSFLFNT 76
           ++ L+Q+HA L+      S     L K++    +   G I YA+++F  I  P+ F +N+
Sbjct: 70  MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 129

Query: 77  LIIRNSKANF-STDSLLFYRRMIVSNI-SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           +I   S++   S + ++ +R+M+     +P+ +T + V+K+C+ +S L  G+ VH +V  
Sbjct: 130 MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLK 189

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
           SG+ S   V+ ALVNFYAK  ++ +A KVFD + D+++VAW++MISGY + G   EA+GL
Sbjct: 190 SGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGL 249

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           F  M+  GV PD  T V V++ACA  G +D G+WVH +I  Q ++ ++ L+T+L+NMYA+
Sbjct: 250 FRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAK 309

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CG + +A+E+FD M   +  AW++MI G  ++G   +A+E F RM    V+PN+VTF+ V
Sbjct: 310 CGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGV 369

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           LSACAH+GLV EG R ++SM  E+G++P +E + CMVDL  RA L+ +A   V + +   
Sbjct: 370 LSACAHSGLVSEGRRYWSSM-LEFGIVPSMELYGCMVDLLCRASLVEDACTLV-ETMPIS 427

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P P +W  +L  CK  KN D    VA+ LL +EP N  +Y++LSN+YA   + +++  VR
Sbjct: 428 PNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVR 487

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
             M   G+K   G S++EVD   + F MGD SHP   E+ + L ++  R    G+ P   
Sbjct: 488 KKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGIS 547

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
             +H + +EE+E +L  HSE+LA+A+GL++T   M IRIVKNLR+C DCH   K IS   
Sbjct: 548 DVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEY 607

Query: 555 NREIIVRDRLRFHHFKRGSCS 575
            REIIVRDR+RFH F  GSCS
Sbjct: 608 RREIIVRDRVRFHKFVNGSCS 628


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/582 (39%), Positives = 368/582 (63%), Gaps = 8/582 (1%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLV--CDA-GFITYA 59
           P    Y ++L A   L  L   +Q+H+ +I  G      +   L+ +   C A G +  +
Sbjct: 54  PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 113

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKA-NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           +++F  +P  +   +  +I   +++     +++  + +MI  +I P++++FS+V+K+C +
Sbjct: 114 RKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN 173

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           LS    G  V+ +    G  S   V  +L++ YA+S  ++ ARK FD + +K++V++N++
Sbjct: 174 LSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 233

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           + GY +N  ++EA  LFN + D G+   + T   +L+  A +G +  G  +H  ++  G 
Sbjct: 234 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY 293

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             N  +  +LI+MY+RCGN+  A ++F+ M + NVI+WT+MI+G+  HG+ T A+E+FH+
Sbjct: 294 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 353

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M   G +PN +T+VAVLSAC+H G++ EG + F SM +E+G++P +EH+ CMVDL GR+G
Sbjct: 354 MLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSG 413

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           LL EA +F+  +     A  VW  +LGAC++H N +LG   AE +L  EP++P  Y++LS
Sbjct: 414 LLVEAMEFINSMPLMADA-LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLS 472

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           N++A AG+   V  +R  M ++ L K  G S +EV+ + + F +G+ SHP   +IYQ LD
Sbjct: 473 NLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELD 532

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           +L  + +E GY+P+++  +H++EEE++E  L  HSEK+A+AFGL+ TS    IRI KNLR
Sbjct: 533 QLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLR 592

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+AIK+IS+AT REI+VRD  RFHH K G CSC DYW
Sbjct: 593 VCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 178/340 (52%), Gaps = 15/340 (4%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A ++F  +P  +   +  +I R ++   + D++  +  M +S   P  +T+S+V+ +C  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK---SNNVDVARKVFDRMPDKSVVAW 175
           L +L LG+ +H  V   G   D+ V  +LV+ YAK     +VD +RKVF++MP+ +V++W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 176 NSMISGYEQNGFA-KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
            ++I+ Y Q+G   KEAI LF  M    + P+  +   VL AC  L D   G  V+ + V
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             G+     +  SLI+MYAR G +  AR+ FD++ E N++++ A++ GY  +    EA  
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 248

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC----M 350
           LF+ +   G+  +  TF ++LS  A  G + +G ++   +     L  G + + C    +
Sbjct: 249 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQCICNAL 303

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           + ++ R G +  A++   ++  E      WT+M+     H
Sbjct: 304 ISMYSRCGNIEAAFQVFNEM--EDRNVISWTSMITGFAKH 341


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/545 (40%), Positives = 332/545 (60%), Gaps = 37/545 (6%)

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
           P +  + + I  +S       +L     M+   + P+ +T SA + +C  LS    GRA+
Sbjct: 352 PTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRGLSP---GRAL 408

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNN-------------------------------- 156
           H + F      D +V  AL+  YA++ +                                
Sbjct: 409 HGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGA 468

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           +D AR +FD +P K  V WN+MI GY Q+G   EA+ LF  M   GV PD  T V VL+A
Sbjct: 469 LDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSA 528

Query: 217 CAQLGDIDLGRWVHEFIV-GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
            AQLG ++ G+W+H ++   + + ++V + T+LI+MY +CG++  A ++F  + + +++ 
Sbjct: 529 VAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVV 588

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           W AMI+GY MHG   +A+E+F + R  G+ P ++TF+ +L+AC+H+G+V+EG   F SM 
Sbjct: 589 WNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSME 648

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
           +EYG+ P +EH+ CMVDL GRAGL+ EA+  V+  +   P   +W ++L AC++HKN  L
Sbjct: 649 REYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQS-MKITPDAVMWVSLLAACRLHKNMSL 707

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
           G ++A++L++    N G Y++LSNIYA  G    V  VR++M   G++K  G S++E+D+
Sbjct: 708 GQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDR 767

Query: 456 KNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEK 515
           + Y F  GD SHP T+EIY  LD++ G  +E G+VP++E  +H+L+E  +E +L  HSEK
Sbjct: 768 EVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEK 827

Query: 516 LALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCS 575
           LALAFGL+ T PG TI+IVKNLR C DCH+ +K IS  T R+I+ RDR RFHHF  GSCS
Sbjct: 828 LALAFGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCS 887

Query: 576 CLDYW 580
           C DYW
Sbjct: 888 CGDYW 892


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/587 (39%), Positives = 360/587 (61%), Gaps = 13/587 (2%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P   ++   +KA   L  +   +Q H    V GY     + + L+ +    G +  A+++
Sbjct: 74  PTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKV 133

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTF------SAVIKSC 116
           F  IP  +   + ++I        + D++  ++ ++V      +  F       +VI +C
Sbjct: 134 FDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISAC 193

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN--VDVARKVFDRMPDKSVVA 174
           + +    L  ++H  V   G+D  + V   L++ YAK     V VARK+FD++ DK  V+
Sbjct: 194 SRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS 253

Query: 175 WNSMISGYEQNGFAKEAIGLFN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           +NS++S Y Q+G + EA  +F  L+++  V  ++ T   VL A +  G + +G+ +H+ +
Sbjct: 254 YNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQV 313

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  GL+ +V++ TS+I+MY +CG V  AR+ FD M   NV +WTAMI+GYGMHG+  +A+
Sbjct: 314 IRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKAL 373

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           ELF  M   GVRPN +TFV+VL+AC+HAGL  EG R F +M+  +G+ PG+EH+ CMVDL
Sbjct: 374 ELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDL 433

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GRAG L +AY  ++  +  KP   +W+++L AC++HKN +L       L  ++  N G+
Sbjct: 434 LGRAGFLQKAYDLIQR-MKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGY 492

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           Y++LS+IYA AGR   VE VR IM  +GL K  G+S +E++ + ++F +GD+ HP   +I
Sbjct: 493 YMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKI 552

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           Y++L EL  +  EAGYV  + S  H+++EEE+E +LR HSEKLA+AFG+M T PG T+ +
Sbjct: 553 YEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNV 612

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           VKNLR+C DCH+ IK IS   +RE +VRD  RFHHFK G CSC DYW
Sbjct: 613 VKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 180/334 (53%), Gaps = 12/334 (3%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           +   D F +N++I   +++  S ++LL +  M   ++ P+  +F   IK+C+ L  +  G
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSG 95

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           +  H   FV GY SD+ V +AL+  Y+    ++ ARKVFD +P +++V+W SMI GY+ N
Sbjct: 96  KQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLN 155

Query: 186 GFAKEAIGLFNLM------RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           G A +A+ LF  +       D  +  DS   V V++AC+++    L   +H F++ +G D
Sbjct: 156 GNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFD 215

Query: 240 VNVVLATSLINMYARCGN--VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
             V +  +L++ YA+ G   V+ AR+IFD + + + +++ +++S Y   G   EA E+F 
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFR 275

Query: 298 RMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
           R+  + V   N +T   VL A +H+G ++ G  +   + +  GL   V     ++D++ +
Sbjct: 276 RLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCK 334

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            G +  A K   D +  K   + WTAM+    MH
Sbjct: 335 CGRVETARKAF-DRMKNKNVRS-WTAMIAGYGMH 366


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/578 (40%), Positives = 346/578 (59%), Gaps = 37/578 (6%)

Query: 6    PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
            P    Y  +LKA    + L    Q+HA ++  G   +  +   L+S+    G +  A R+
Sbjct: 1124 PDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRV 1183

Query: 63   FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
               +P  D   +N+L+   ++     D+L   + M +  + P   T ++++ +  +  + 
Sbjct: 1184 LDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCL- 1242

Query: 123  NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
                                            +NV   +++F ++ +KS+V+WN MI+ Y
Sbjct: 1243 --------------------------------DNVSFVKEMFMKLANKSLVSWNVMIAVY 1270

Query: 183  EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
              N    EA+ +F  M D  V+PD+ +   VL AC  L  + LGR +HE++V + L  N+
Sbjct: 1271 MNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNL 1330

Query: 243  VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +L  +LI+MYA+CG +  ARE+FD M   +V++WT+MIS YGM+G G +AV LF RM+  
Sbjct: 1331 LLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDL 1390

Query: 303  GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
            G+ P+++ FV+VLSAC+HAGL+ EG   F  M +E  ++P +EH VCMVDL GRAG ++E
Sbjct: 1391 GLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDE 1450

Query: 363  AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
            AY F+K +  E P   VW A+L AC+++ N  +G+  A+ L  + PE  G+YV+LSNIYA
Sbjct: 1451 AYGFIKQMPME-PNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYA 1509

Query: 423  LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             AGR + V  VR+IM  KG+KK  G S  E+D + + F  GD+SHP + +IY+ LD L+G
Sbjct: 1510 KAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVG 1569

Query: 483  RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
            + +EAGYVPE++SA+H++EEE++E  L  HSEKLA+AF ++ T+PG  IRI KNLR+C D
Sbjct: 1570 KMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGD 1629

Query: 543  CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            CH A K IS    REI +RD  RFHHF  G CSC DYW
Sbjct: 1630 CHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 4/190 (2%)

Query: 138  DSDLHVQAAL----VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            D DLH   +L    +  YA        R +FD +P K+VV +N MI  Y  N    +A+ 
Sbjct: 1053 DHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALL 1112

Query: 194  LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
            +F  M   G++PD  T  CVL A +   D+ +G  +H  +V  GLD+NV +   LI+MY 
Sbjct: 1113 VFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYG 1172

Query: 254  RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
            +CG + +A  + D M   +V++W ++++G   +G   +A+E+   M   G++P+  T  +
Sbjct: 1173 KCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMAS 1232

Query: 314  VLSACAHAGL 323
            +L A  +  L
Sbjct: 1233 LLPAVTNTCL 1242


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/582 (39%), Positives = 368/582 (63%), Gaps = 8/582 (1%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLV--CDA-GFITYA 59
           P    Y ++L A   L  L   +Q+H+ +I  G      +   L+ +   C A G +  +
Sbjct: 49  PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 108

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKA-NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           +++F  +P  +   +  +I   +++     +++  + +MI  +I P++++FS+V+K+C +
Sbjct: 109 RKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN 168

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           LS    G  V+ +    G  S   V  +L++ YA+S  ++ ARK FD + +K++V++N++
Sbjct: 169 LSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 228

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           + GY +N  ++EA  LFN + D G+   + T   +L+  A +G +  G  +H  ++  G 
Sbjct: 229 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY 288

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             N  +  +LI+MY+RCGN+  A ++F+ M + NVI+WT+MI+G+  HG+ T A+E+FH+
Sbjct: 289 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 348

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M   G +PN +T+VAVLSAC+H G++ EG + F SM +E+G++P +EH+ CMVDL GR+G
Sbjct: 349 MLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSG 408

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           LL EA +F+  +     A  VW  +LGAC++H N +LG   AE +L  EP++P  Y++LS
Sbjct: 409 LLVEAMEFINSMPLMADA-LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLS 467

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           N++A AG+   V  +R  M ++ L K  G S +EV+ + + F +G+ SHP   +IYQ LD
Sbjct: 468 NLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELD 527

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           +L  + +E GY+P+++  +H++EEE++E  L  HSEK+A+AFGL+ TS    IRI KNLR
Sbjct: 528 QLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLR 587

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+AIK+IS+AT REI+VRD  RFHH K G CSC DYW
Sbjct: 588 VCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 178/340 (52%), Gaps = 15/340 (4%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A ++F  +P  +   +  +I R ++   + D++  +  M +S   P  +T+S+V+ +C  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK---SNNVDVARKVFDRMPDKSVVAW 175
           L +L LG+ +H  V   G   D+ V  +LV+ YAK     +VD +RKVF++MP+ +V++W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 176 NSMISGYEQNGFA-KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
            ++I+ Y Q+G   KEAI LF  M    + P+  +   VL AC  L D   G  V+ + V
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             G+     +  SLI+MYAR G +  AR+ FD++ E N++++ A++ GY  +    EA  
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 243

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC----M 350
           LF+ +   G+  +  TF ++LS  A  G + +G ++   +     L  G + + C    +
Sbjct: 244 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQCICNAL 298

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           + ++ R G +  A++   ++  E      WT+M+     H
Sbjct: 299 ISMYSRCGNIEAAFQVFNEM--EDRNVISWTSMITGFAKH 336


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/624 (37%), Positives = 365/624 (58%), Gaps = 50/624 (8%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    +  + KA   LK     + V+ +++  G+  +  +   +L +    G +  A+R
Sbjct: 108 RPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARR 167

Query: 62  IFFCIPSPDSFLFNTLII-RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
            F  I   D F++N ++    SK  F   +L  +R+M++  + P++ T ++ + +C +LS
Sbjct: 168 FFEEIEFKDVFMWNIMVSGYTSKGEFKK-ALNVFRKMVLEGVKPNSITIASAVSACTNLS 226

Query: 121 ILNLGRAVHCH-VFVSGYDSDLHVQAALVNFYAKSNNVDVARK----------------- 162
           +L  GR +H + + V   DSDL V  +LV++YAK  +V+VAR+                 
Sbjct: 227 LLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAML 286

Query: 163 --------------------------VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN 196
                                     VF  +  + VV WNS+IS   Q+G +  A+ L  
Sbjct: 287 AVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLR 346

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            M    V  ++ T V  L AC++L  +  G+ +H+FI+  GLD    +  SLI+MY RCG
Sbjct: 347 EMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCG 406

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
           ++ K+R IFD+M + ++++W  MIS YGMHG+G +AV LF + R  G++PN++TF  +LS
Sbjct: 407 SIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLS 466

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC+H+GL++EG + F  M+ EY + P VE + CMVDL  RAG  NE  +F++ +  E P 
Sbjct: 467 ACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFE-PN 525

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
            AVW ++LGAC++H N DL    A +L  +EP++ G+YV+++NIY+ AGR +    +R +
Sbjct: 526 AAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCL 585

Query: 437 MIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESA 496
           M ++G+ K  G S +EV +K + F +GD SHP   +I   ++ L    +E GYVP++   
Sbjct: 586 MKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFV 645

Query: 497 MHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNR 556
           + +++E+E+E+SL  HSEK+ALAFGL+ T+ G  +RI+KNLR+C DCHSA KFIS    R
Sbjct: 646 LQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKR 705

Query: 557 EIIVRDRLRFHHFKRGSCSCLDYW 580
           +II+RD  RFHHF  G CSC DYW
Sbjct: 706 DIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 173/324 (53%), Gaps = 12/324 (3%)

Query: 11  YEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y +IL+   +L  L+   QVHA L+V G      + ++LL + C  G +  A+R+F  + 
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             + F +  ++          +++  +  M+   + P ++ F  V K+C+ L    +G+ 
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 132

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           V+ ++   G++ +  V+ ++++ + K   +D+AR+ F+ +  K V  WN M+SGY   G 
Sbjct: 133 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 192

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG-QGLDVNVVLAT 246
            K+A+ +F  M   GV P+S T    ++AC  L  +  GR +H + +  + LD ++++  
Sbjct: 193 FKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGN 252

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAM--ISGYGMHGYGTEAVELFHRMR---- 300
           SL++ YA+C +V  AR  F M+ + ++++W AM  ++G+  +G G  A+E F RM     
Sbjct: 253 SLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACS 312

Query: 301 --AHGVRPNNVTFVAVLSACAHAG 322
             +     + V + +++SACA +G
Sbjct: 313 VFSELSTRDVVVWNSIISACAQSG 336



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 132/234 (56%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M ++N       ++++++ C  L  L LG  VH  + V+G D    + + L+  Y ++  
Sbjct: 1   MDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC 60

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           V+ AR++FD+M +++V +W +++  Y   G  +E I LF LM + GV PD      V  A
Sbjct: 61  VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKA 120

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C++L +  +G+ V+++++  G + N  +  S+++M+ +CG +  AR  F+ +   +V  W
Sbjct: 121 CSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMW 180

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
             M+SGY   G   +A+ +F +M   GV+PN++T  + +SAC +  L++ G  +
Sbjct: 181 NIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 234



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 14/226 (6%)

Query: 203 VNPDSTTCV--CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            NPD    +   +L  C +L ++ LG  VH  +V  G+DV   L + L+ +Y + G V  
Sbjct: 4   TNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED 63

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           AR +FD MSE NV +WTA++  Y   G   E ++LF+ M   GVRP++  F  V  AC+ 
Sbjct: 64  ARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSE 123

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVC----MVDLFGRAGLLNEAYKFVKDVIGEKPA 376
               + G  V+     +Y L  G E + C    ++D+F + G ++ A +F +++  E   
Sbjct: 124 LKNYRVGKDVY-----DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEI--EFKD 176

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
             +W  M+        F   + V   ++ +E   P    + S + A
Sbjct: 177 VFMWNIMVSGYTSKGEFKKALNVFRKMV-LEGVKPNSITIASAVSA 221



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 86/185 (46%), Gaps = 7/185 (3%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           + N + ++    + L A  +L  L+Q   +H  +I  G      +L  L+ +    G I 
Sbjct: 350 LSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQ 409

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            ++RIF  +P  D   +N +I       F  D++  +++     + P++ TF+ ++ +C+
Sbjct: 410 KSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACS 469

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQ--AALVNFYAKSNNVDVARKVFDRMP-DKSVVA 174
           H  ++  G   +  +  + Y  D  V+  A +V+  +++   +   +  ++MP + +   
Sbjct: 470 HSGLIEEGWK-YFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAV 528

Query: 175 WNSMI 179
           W S++
Sbjct: 529 WGSLL 533


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/573 (40%), Positives = 355/573 (61%), Gaps = 15/573 (2%)

Query: 21  LKPLQQVHAHLIVAGYGRSR--SMLTKLLSLVCDAG-----FITYAQRIFFCIPSP-DSF 72
           L+ L Q+HA  + AG G     + +T+LL+L  + G      + YA+++F  IP P D  
Sbjct: 41  LRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVV 100

Query: 73  LFNTLIIRNSKANF----STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
            +NTL+   ++  +    + ++   + RM+   ++P  YTF +++K+CA       GR  
Sbjct: 101 WYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQA 160

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H     +G     +V   L+N YA+  +V  AR +FDRM  + VV++N+MI+   ++   
Sbjct: 161 HGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLP 220

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
            EA+ LF  M+  G+ P S T + VL+ACA LG ++LGRW+H++I    LD  V + T+L
Sbjct: 221 GEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTAL 280

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           I+MYA+CG++  A  +F  M   +  AW+ M+  Y  HGYG EA+ +F  M+  G++P++
Sbjct: 281 IDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDD 340

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           VTF+ VL AC+H+G+V EG + F SMR EYG++ G++H+ C+ DL  R+G L  AYKF+ 
Sbjct: 341 VTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFI- 398

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
           D +  KP   +W  +L AC  H + D+G  V E +L ++  + G YV+ SN+ A  GR +
Sbjct: 399 DELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWE 458

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
            + +VR +M +KG+ K  G S++E+D   + F  GD SHP++ E  + +DE++ + +  G
Sbjct: 459 EMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVG 518

Query: 489 YVPESESAMH-ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           YVP +    H E+ EEE+  SLRYHSEKLA++FGL+ T+PG T+RIVKNLR+C DCHS  
Sbjct: 519 YVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMA 578

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           K +S+  NR II+RD  RFHHF+ G CSC DYW
Sbjct: 579 KLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/600 (39%), Positives = 359/600 (59%), Gaps = 41/600 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFI--TYAQRIFFCIPSPDSFLFNTLI 78
           LK   ++ + +I+ G+       ++LL    D+ FI   Y+ +IF  I + + F++NT++
Sbjct: 42  LKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMM 101

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
               ++N +  +LL Y+ M+ +N+ P NYT+  V+++CA   +   G+ +H HV   G+D
Sbjct: 102 RAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFD 161

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMP------------------------------ 168
           SD++VQ  L+N YA   N+  ARK+FD  P                              
Sbjct: 162 SDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLF 221

Query: 169 ----DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
               +K +V+W+++ISGYEQNG  +EA+ +F  M   G+  D    V VL+ACA L  + 
Sbjct: 222 NEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVK 281

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYA----RCGNVSKAREIFDMMSELNVIAWTAMI 280
            G+ +H  ++  G++  V L  +LI+MY+    +CG V  A E+F+ M E  V +W A+I
Sbjct: 282 TGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALI 341

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
            G  ++G    ++++F  M+ +GV PN +TF+ VL AC H GLV EG   FASM +++G+
Sbjct: 342 IGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGI 401

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P V+H+ CMVDL GRAGLLNEA K ++  +   P  A W A+LGACK H + ++G  V 
Sbjct: 402 EPNVKHYGCMVDLLGRAGLLNEAEKLIES-MPMAPDVATWGALLGACKKHGDTEMGERVG 460

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
             L+ ++P++ G +V+LSNI+A  G  + V  VR +M Q+G+ K  G S +E +   + F
Sbjct: 461 RKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEF 520

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
             GDK+HP  N++   L+E+  R +  GY P++     +++EEE+E +L  HSEKLA+AF
Sbjct: 521 LAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAF 580

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+  SP   IRI+KNLR+C DCH+A K IS A  REI+VRDR RFH+FK G+CSC+DYW
Sbjct: 581 GLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 640


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/624 (38%), Positives = 354/624 (56%), Gaps = 52/624 (8%)

Query: 5   QPHS-PAYEAILKAGP---------RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAG 54
           QP S P    IL   P          LK   QVHAH+++ G   +  + +K+++    +G
Sbjct: 60  QPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSG 119

Query: 55  FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
            I  +  +F  I  P S LFN++I   ++  F+  ++  Y  M     +   +TF  V+K
Sbjct: 120 DIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLK 179

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD--------- 165
           S   L  + +G+ VH  +   G   DL+V  +L+  Y K   ++ A KVFD         
Sbjct: 180 SSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSS 239

Query: 166 ----------------------RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM--RDF 201
                                 RMP +++V+W +MISGY Q+G A++A+ LF+ M   D 
Sbjct: 240 WNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDS 299

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           GV P+  T + VL ACAQL  ++ GR +HE     GL+ N  +  +L  MYA+CG++  A
Sbjct: 300 GVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDA 359

Query: 262 REIFDMMS--ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           R  FD ++  E N+IAW  MI+ Y  +G+G +AV  F  M   G++P+++TF  +LS C+
Sbjct: 360 RNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCS 419

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA- 378
           H+GLV  G + F  M   Y + P VEH+ C+ DL GRAG L EA K V    GE P PA 
Sbjct: 420 HSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLV----GEMPMPAG 475

Query: 379 --VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
             +W ++L AC+ H+N ++    A  L  +EPEN G+YV+LSN+YA AGR   V+ +R I
Sbjct: 476 PSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAI 535

Query: 437 MIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESA 496
           +  +G KK  G S +E++ K ++F  GD SHP   EIY +L+ L  + + AGY P++   
Sbjct: 536 VKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYV 595

Query: 497 MHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNR 556
           +H++ EEE+E++L  HSEKLA+AFG++ T     +R+ KNLR+C DCH+A+ FIS    R
Sbjct: 596 LHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGR 655

Query: 557 EIIVRDRLRFHHFKRGSCSCLDYW 580
           E+IVRD  RFHHFK G CSC DYW
Sbjct: 656 EVIVRDINRFHHFKGGCCSCGDYW 679


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/583 (38%), Positives = 350/583 (60%), Gaps = 4/583 (0%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           +K   P+   Y +IL+    +  L   +Q+H  +I  G+  +  + + L+ +    G + 
Sbjct: 408 IKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLD 467

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A  I   +   D   +  LI   ++ N   ++L  ++ M+   I   N  FS+ I +CA
Sbjct: 468 TAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACA 527

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            +  LN GR +H   +VSGY  DL +  ALV+ YA+   +  A   F+++  K  ++WN 
Sbjct: 528 GIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNG 587

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +ISG+ Q+G+ ++A+ +F  M    +     T    ++A A + +I  G+ +H  I+ +G
Sbjct: 588 LISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRG 647

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
            D ++ ++ +LI  YA+CG++  AR  F  M E N ++W AMI+GY  HGYG EAV LF 
Sbjct: 648 FDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFE 707

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
           +M+  G  PN+VTFV VLSAC+H GLV +G   F SM +E+GL+P   H+ C+VDL  RA
Sbjct: 708 KMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRA 767

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           G L+ A KF++++  E P   +W  +L AC +HKN ++G   A+HLL +EPE+   YV+L
Sbjct: 768 GFLSRARKFIEEMPIE-PDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLL 826

Query: 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL 477
           SN+YA++G+ D  +  R +M  +G+KK  G S +EV    + F +GD+ HP  ++IY++L
Sbjct: 827 SNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFL 886

Query: 478 DELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNL 537
            EL  +  E GY  +  S ++++E+E+++ ++  HSEKLA+ FGL+  S  + I ++KNL
Sbjct: 887 AELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNL 946

Query: 538 RMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R+C DCHS IKF+S  +NR IIVRD  RFHHF+ G CSC DYW
Sbjct: 947 RVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 219/432 (50%), Gaps = 16/432 (3%)

Query: 2   KNKQPHSPAYEAILKA--GPRL--KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           +N  P   ++ ++L+A  G R+  +  +Q+HA +I  G   S  +   L+ L    G I 
Sbjct: 105 ENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLII 164

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A+++F  + + DS  +  +I   S+  +  +++  +  M  + I P+ Y FS+V+  C 
Sbjct: 165 SARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCT 224

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            + + ++G  +H  VF  G   + +V  ALV  Y++  N   A KVF +M  K  V++NS
Sbjct: 225 KIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNS 284

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +ISG  Q GF+  A+ LF  M+   + PD  T   +L+ACA  G +  G  +H +++  G
Sbjct: 285 LISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAG 344

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           +  ++++  +L+++Y  C ++  A E+F      NV+ W  M+  +G     +E+  +F 
Sbjct: 345 ISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFR 404

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFG 355
           +M+  G+ PN  T+ ++L  C   G +  G ++   + +  G    V  +VC  ++D++ 
Sbjct: 405 QMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKT-GFQFNV--YVCSVLIDMYA 461

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGH 413
           + G L+ A+  ++ +  +      WTA++     H  F   ++  + +L+  ++ +N G 
Sbjct: 462 KHGKLDTAHVILRTLTEDDVVS--WTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIG- 518

Query: 414 YVMLSNIYALAG 425
               S I A AG
Sbjct: 519 --FSSAISACAG 528



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 198/389 (50%), Gaps = 4/389 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H+++I AG      +   LL L  +   I  A  +F    + +  L+N +++   K 
Sbjct: 334 EQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKL 393

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           +  ++S   +R+M +  + P+ +T+ +++++C  +  L+LG  +H  V  +G+  +++V 
Sbjct: 394 DNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVC 453

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           + L++ YAK   +D A  +   + +  VV+W ++ISGY Q+    EA+  F  M + G+ 
Sbjct: 454 SVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQ 513

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            D+      ++ACA +  ++ GR +H      G   ++ +  +L+++YARCG + +A   
Sbjct: 514 SDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLE 573

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ +   + I+W  +ISG+   GY  +A+++F +M    +  +  TF + +SA A+   +
Sbjct: 574 FEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANI 633

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           ++G ++ A M  + G    +E    ++  + + G + +A +   ++   +     W AM+
Sbjct: 634 KQGKQIHA-MIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEM--PEKNDVSWNAMI 690

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGH 413
                H   +  V + E +  V  E P H
Sbjct: 691 TGYSQHGYGNEAVNLFEKMKQV-GEMPNH 718



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 187/372 (50%), Gaps = 24/372 (6%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY---- 58
           P    + ++L    ++K     +Q+HA  +V  YG S      L + VC+A    Y    
Sbjct: 211 PTPYVFSSVLSGCTKIKLFDVGEQLHA--LVFKYGSS------LETYVCNALVTLYSRMP 262

Query: 59  ----AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
               A+++F  + S D   FN+LI   ++  FS  +L  + +M    + P   T ++++ 
Sbjct: 263 NFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLS 322

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           +CA    L  G  +H +V  +G  SD+ V+ AL++ Y   +++  A ++F     ++VV 
Sbjct: 323 ACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVL 382

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           WN M+  + +     E+  +F  M+  G+ P+  T   +L  C  +G +DLG  +H  ++
Sbjct: 383 WNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVI 442

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             G   NV + + LI+MYA+ G +  A  I   ++E +V++WTA+ISGY  H    EA++
Sbjct: 443 KTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALK 502

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY--GLLPGVEHHVCMVD 352
            F  M   G++ +N+ F + +SACA    + +G ++ A   Q Y  G    +     +V 
Sbjct: 503 HFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHA---QSYVSGYSEDLSIGNALVS 559

Query: 353 LFGRAGLLNEAY 364
           L+ R G + EAY
Sbjct: 560 LYARCGRIKEAY 571



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/458 (23%), Positives = 209/458 (45%), Gaps = 44/458 (9%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L   +++H  ++  G+G    +  KL+ +    G +    ++F  +P+     ++ +I  
Sbjct: 26  LVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISG 85

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA-HLSILNLGRAVHCHVFVSGYDS 139
             +   S   L  +  MI  N+SP+  +F++V+++C+ H   +     +H  +   G   
Sbjct: 86  FMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLC 145

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
              +   L+  YAK+  +  ARKVFD +  K  V+W +MISG+ QNG+ +EAI LF  M 
Sbjct: 146 SPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMH 205

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+ P       VL+ C ++   D+G  +H  +   G  +   +  +L+ +Y+R  N  
Sbjct: 206 TAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFV 265

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            A ++F  M   + +++ ++ISG    G+   A+ELF +M+   ++P+ VT  ++LSACA
Sbjct: 266 SAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACA 325

Query: 320 HAGLVQEG-----------------------------------HRVFASMRQEYGLLPGV 344
             G + +G                                   H +F + + E  +L  V
Sbjct: 326 SNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNV 385

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVK--DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
                M+  FG+   L+E+++  +   + G  P    + ++L  C      DLG ++   
Sbjct: 386 -----MLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQ 440

Query: 403 LLSVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           ++    + N     +L ++YA  G++D   V+   + +
Sbjct: 441 VIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTE 478



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 129/244 (52%), Gaps = 13/244 (5%)

Query: 122 LNLGRAVHCH-----VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
           LN G  V C      +   G+ ++  +   LV+ Y    ++D   KVF+ MP++SV +W+
Sbjct: 21  LNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWD 80

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA--QLGDIDLGRWVHEFIV 234
            +ISG+ +   +   + LF+ M +  V+P   +   VL AC+  ++G I     +H  I+
Sbjct: 81  KIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIG-IRYAEQIHARII 139

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             GL  + +++  LI +YA+ G +  AR++FD +   + ++W AMISG+  +GY  EA+ 
Sbjct: 140 CHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIH 199

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVD 352
           LF  M   G+ P    F +VLS C    L   G ++ A +  +YG    +E +VC  +V 
Sbjct: 200 LFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHA-LVFKYG--SSLETYVCNALVT 256

Query: 353 LFGR 356
           L+ R
Sbjct: 257 LYSR 260



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 97/242 (40%), Gaps = 47/242 (19%)

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M   G+  +  T + +L  C   G +   + +H  I+  G     VL   L+++Y   G+
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           +    ++F+ M   +V +W  +ISG+         ++LF  M    V P  ++F +VL A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 318 CAHAGLVQEGHRVFASMRQE-------YGLLPGVEHHVCMVDLFGRAGLLNEAYKF---- 366
           C+       GHR+     ++       +GLL        ++ L+ + GL+  A K     
Sbjct: 121 CS-------GHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNL 173

Query: 367 -VKDVI----------------------------GEKPAPAVWTAMLGACKMHKNFDLGV 397
             KD +                            G  P P V++++L  C   K FD+G 
Sbjct: 174 CTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGE 233

Query: 398 EV 399
           ++
Sbjct: 234 QL 235


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/628 (37%), Positives = 359/628 (57%), Gaps = 65/628 (10%)

Query: 16  KAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFL 73
           K+   L+ L Q+H  ++ +G+ +   +   LL    +  F    +A ++F  IP+P+ F+
Sbjct: 41  KSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFI 100

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC-------------AHLS 120
           +N +I    + N    ++ FY RM++ +  P+ +T+  + K+C              H+ 
Sbjct: 101 WNIVIKGCLENNKLFKAIYFYGRMVI-DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVV 159

Query: 121 ILNLGRAVHC-----HVFVS--------------------------GYDSDLHVQAA--- 146
              +G  VH      H++ S                          GY     ++AA   
Sbjct: 160 KHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGL 219

Query: 147 --------------LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI 192
                         ++N  AK  N+  ARK+FD M ++  ++W+SM+ GY   G  KEA+
Sbjct: 220 FAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEAL 279

Query: 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252
            +F  M+     P       VLAAC+ +G ID GRWVH ++    + ++ VL T+L++MY
Sbjct: 280 EIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMY 339

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
           A+CG +    E+F+ M E  +  W AMI G  +HG   +A+ELF +++   ++PN +T V
Sbjct: 340 AKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLV 399

Query: 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372
            VL+ACAHAG V +G R+F +MR+ YG+ P +EH+ CMVDL GR+GL +EA   + + + 
Sbjct: 400 GVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLI-NSMP 458

Query: 373 EKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432
            KP  AVW A+LGAC++H NFDL   V + LL +EP+N G YV+LSNIYA  GR D V  
Sbjct: 459 MKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSK 518

Query: 433 VRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPE 492
           +R +M  +G+K   G S V+++   + F MGD SHP   EIY+ L  +  R + AG+ P+
Sbjct: 519 IRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPD 578

Query: 493 SESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISV 552
           +   + +++EEE+E ++ YHSEKLA+AFGL+ T PG  I IVKNLR+C DCHSA K IS 
Sbjct: 579 TSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQ 638

Query: 553 ATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             +REIIVRDR+R+HHFK G+CSC D+W
Sbjct: 639 IFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 140/281 (49%), Gaps = 13/281 (4%)

Query: 12  EAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS 71
           +  LK G  L+  + + A + V   G    M+  L       G +  A+++F  +   D 
Sbjct: 205 DGYLKCGV-LEAAKGLFAQMPVKNIGSWNVMINGL----AKGGNLGDARKLFDEMSERDE 259

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
             +++++     A    ++L  +++M      P  +  S+V+ +C+++  ++ GR VH +
Sbjct: 260 ISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAY 319

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           +  +    D  +  AL++ YAK   +D+  +VF+ M ++ +  WN+MI G   +G A++A
Sbjct: 320 LKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDA 379

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG----RWVHEFIVGQGLDVNVVLATS 247
           + LF+ +++  + P+  T V VL ACA  G +D G    + + EF    G+D  +     
Sbjct: 380 LELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY---GVDPELEHYGC 436

Query: 248 LINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHG 287
           ++++  R G  S+A ++ + M  + N   W A++    +HG
Sbjct: 437 MVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHG 477


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/560 (40%), Positives = 348/560 (62%), Gaps = 2/560 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           ++P +Q+HA +   G   +  + TKL++L C    +T A  +F  I   + FL+N +I  
Sbjct: 17  IEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRG 76

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            +       ++  Y +M    + P  +TF  V+K+C+ LS +  G+ +H  V  SG +SD
Sbjct: 77  YAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESD 136

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           + V AAL++ YAK   V+ AR+VFD++ ++ VV WNSM++ Y QNG   E++ L  +M  
Sbjct: 137 VFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAF 196

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G+ P   T V  +AA A  G +  G+ +H +    G + N  + T+L++MYA+ G+V+ 
Sbjct: 197 NGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNV 256

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           AR +F+++ E  V++W AMI+GY MHG+  EA++LF  M+   V P+++TFV VL+AC+H
Sbjct: 257 ARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGK-VLPDHITFVGVLAACSH 315

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
            GL+ EG   F SM  ++ + P V+H+ CM+DL G  G L EAYK + ++  E P   VW
Sbjct: 316 GGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVE-PDAGVW 374

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
            A+L +CK+H N ++G    E L+ +EP++ G+YV+LSN+YA AG+ D V  +R++M+ K
Sbjct: 375 GALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNK 434

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
           GLKK +  S +EV  K + F   D SHP +  IY  L       +EAGY P+  S  H++
Sbjct: 435 GLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDV 494

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
           E++E+   +  HSE+LA+AFGL+ TS G  + I+KNLR+C DCH AIKFIS  T REI +
Sbjct: 495 EDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITI 554

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RD  R+HHFK G CSC D+W
Sbjct: 555 RDVNRYHHFKDGVCSCGDFW 574



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 153/282 (54%), Gaps = 3/282 (1%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           ++++++SC     +  G+ +H  +   G   +  +   LVN Y   N++  A  +FDR+ 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
            +++  WN MI GY  NG  + AI L+  MRD+G+ PD  T   VL AC+ L  ++ G+ 
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H+ ++  GL+ +V +  +LI+MYA+CG V  AR++FD + E +V+ W +M++ Y  +G 
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             E++ L   M  +G++P   TFV  ++A A  GL+ +G  +       +G     +   
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHG-YSWRHGFESNDKVKT 242

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            ++D++ ++G +N A    +  + E+     W AM+    MH
Sbjct: 243 ALMDMYAKSGSVNVARSLFE--LLEEKRVVSWNAMITGYAMH 282


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/582 (39%), Positives = 367/582 (63%), Gaps = 8/582 (1%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLV--CDA-GFITYA 59
           P    Y ++L A   L  L   +Q+H+ +I  G      +   L+ +   C A G +  +
Sbjct: 229 PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 288

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKA-NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           +++F  +P  +   +  +I    ++     +++  + +MI  +I P++++FS+V+K+C +
Sbjct: 289 RKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN 348

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           LS    G  V+ +    G  S   V  +L++ YA+S  ++ ARK FD + +K++V++N++
Sbjct: 349 LSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 408

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           + GY +N  ++EA  LFN + D G+   + T   +L+  A +G +  G  +H  ++  G 
Sbjct: 409 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY 468

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             N  +  +LI+MY+RCGN+  A ++F+ M + NVI+WT+MI+G+  HG+ T A+E+FH+
Sbjct: 469 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 528

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M   G +PN +T+VAVLSAC+H G++ EG + F SM +E+G++P +EH+ CMVDL GR+G
Sbjct: 529 MLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSG 588

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           LL EA +F+  +     A  VW  +LGAC++H N +LG   AE +L  EP++P  Y++LS
Sbjct: 589 LLVEAMEFINSMPLMADA-LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLS 647

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           N++A AG+   V  +R  M ++ L K  G S +EV+ + + F +G+ SHP   +IYQ LD
Sbjct: 648 NLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELD 707

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           +L  + +E GY+P+++  +H++EEE++E  L  HSEK+A+AFGL+ TS    IRI KNLR
Sbjct: 708 QLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLR 767

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+AIK+IS+AT REI+VRD  RFHH K G CSC DYW
Sbjct: 768 VCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 211/387 (54%), Gaps = 20/387 (5%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           +N  P    Y  +LK+  R +  Q    VH  L+ +G      +L  L+SL    G    
Sbjct: 20  QNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTET 79

Query: 59  AQRIFFCIPSP-DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           A+ IF  + +  D   ++ ++   +  +    ++  +  M+     P+ Y F+AVI++C+
Sbjct: 80  ARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACS 139

Query: 118 HLSILNLGRAVHCHVFVSGY-DSDLHVQAALVNFYAK-SNNVDVARKVFDRMPDKSVVAW 175
           + +   +G  ++  V  +GY ++D+ V   L++ + K S ++  A KVFD+MP++++V W
Sbjct: 140 NANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTW 199

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
             MI+ + Q G A++AI LF  M   G  PD  T   VL+AC +LG + LG+ +H  ++ 
Sbjct: 200 TLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIR 259

Query: 236 QGLDVNVVLATSLINMYARC---GNVSKAREIFDMMSELNVIAWTAMISGYGMHGY-GTE 291
            GL ++V +  SL++MYA+C   G+V  +R++F+ M E NV++WTA+I+ Y   G    E
Sbjct: 260 LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKE 319

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC-- 349
           A+ELF +M +  +RPN+ +F +VL AC +      G +V++     Y +  G+    C  
Sbjct: 320 AIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVG 374

Query: 350 --MVDLFGRAGLLNEAYKFVKDVIGEK 374
             ++ ++ R+G + +A K   D++ EK
Sbjct: 375 NSLISMYARSGRMEDARKAF-DILFEK 400



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 154/298 (51%), Gaps = 13/298 (4%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M   N  P   T+S ++KSC       LG+ VH  +  SG + D  V   L++ Y+K  +
Sbjct: 17  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 76

Query: 157 VDVARKVFDRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
            + AR +F+ M +K  +V+W++M+S +  N    +AI  F  M + G  P+      V+ 
Sbjct: 77  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 136

Query: 216 ACAQLGDIDLGRWVHEFIVGQG-LDVNVVLATSLINMYAR-CGNVSKAREIFDMMSELNV 273
           AC+      +G  ++ F+V  G L+ +V +   LI+M+ +  G++  A ++FD M E N+
Sbjct: 137 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNL 196

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
           + WT MI+ +   G   +A++LF  M   G  P+  T+ +VLSAC   GL+  G ++ + 
Sbjct: 197 VTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 256

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRA---GLLNEAYKFVKDVIGEKPAPAV--WTAMLGA 386
           + +  GL   V     +VD++ +    G ++++ K    V  + P   V  WTA++ A
Sbjct: 257 VIR-LGLALDVCVGCSLVDMYAKCAADGSVDDSRK----VFEQMPEHNVMSWTAIITA 309



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 104/196 (53%), Gaps = 4/196 (2%)

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A    +LM      PD TT   +L +C +  +  LG+ VH  ++  GL+++ V+  +LI+
Sbjct: 10  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 69

Query: 251 MYARCGNVSKAREIFD-MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           +Y++CG+   AR IF+ M ++ ++++W+AM+S +  +    +A+  F  M   G  PN  
Sbjct: 70  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 129

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR-AGLLNEAYKFVK 368
            F AV+ AC++A     G  ++  + +   L   V     ++D+F + +G L  AYK V 
Sbjct: 130 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK-VF 188

Query: 369 DVIGEKPAPAVWTAML 384
           D + E+     WT M+
Sbjct: 189 DKMPERNL-VTWTLMI 203


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/582 (39%), Positives = 367/582 (63%), Gaps = 8/582 (1%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLV--CDA-GFITYA 59
           P    Y ++L A   L  L   +Q+H+ +I  G      +   L+ +   C A G +  +
Sbjct: 247 PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 306

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKA-NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           +++F  +P  +   +  +I    ++     +++  + +MI  +I P++++FS+V+K+C +
Sbjct: 307 RKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN 366

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           LS    G  V+ +    G  S   V  +L++ YA+S  ++ ARK FD + +K++V++N++
Sbjct: 367 LSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 426

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           + GY +N  ++EA  LFN + D G+   + T   +L+  A +G +  G  +H  ++  G 
Sbjct: 427 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY 486

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             N  +  +LI+MY+RCGN+  A ++F+ M + NVI+WT+MI+G+  HG+ T A+E+FH+
Sbjct: 487 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 546

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M   G +PN +T+VAVLSAC+H G++ EG + F SM +E+G++P +EH+ CMVDL GR+G
Sbjct: 547 MLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSG 606

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           LL EA +F+  +     A  VW  +LGAC++H N +LG   AE +L  EP++P  Y++LS
Sbjct: 607 LLVEAMEFINSMPLMADA-LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLS 665

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           N++A AG+   V  +R  M ++ L K  G S +EV+ + + F +G+ SHP   +IYQ LD
Sbjct: 666 NLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELD 725

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           +L  + +E GY+P+++  +H++EEE++E  L  HSEK+A+AFGL+ TS    IRI KNLR
Sbjct: 726 QLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLR 785

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+AIK+IS+AT REI+VRD  RFHH K G CSC DYW
Sbjct: 786 VCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 211/387 (54%), Gaps = 20/387 (5%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           +N  P    Y  +LK+  R +  Q    VH  L+ +G      +L  L+SL    G    
Sbjct: 38  QNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTET 97

Query: 59  AQRIFFCIPSP-DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           A+ IF  + +  D   ++ ++   +  +    ++  +  M+     P+ Y F+AVI++C+
Sbjct: 98  ARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACS 157

Query: 118 HLSILNLGRAVHCHVFVSGY-DSDLHVQAALVNFYAK-SNNVDVARKVFDRMPDKSVVAW 175
           + +   +G  ++  V  +GY ++D+ V   L++ + K S ++  A KVFD+MP++++V W
Sbjct: 158 NANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTW 217

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
             MI+ + Q G A++AI LF  M   G  PD  T   VL+AC +LG + LG+ +H  ++ 
Sbjct: 218 TLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIR 277

Query: 236 QGLDVNVVLATSLINMYARC---GNVSKAREIFDMMSELNVIAWTAMISGYGMHGY-GTE 291
            GL ++V +  SL++MYA+C   G+V  +R++F+ M E NV++WTA+I+ Y   G    E
Sbjct: 278 LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKE 337

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC-- 349
           A+ELF +M +  +RPN+ +F +VL AC +      G +V++     Y +  G+    C  
Sbjct: 338 AIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVG 392

Query: 350 --MVDLFGRAGLLNEAYKFVKDVIGEK 374
             ++ ++ R+G + +A K   D++ EK
Sbjct: 393 NSLISMYARSGRMEDARKAF-DILFEK 418



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 154/298 (51%), Gaps = 13/298 (4%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M   N  P   T+S ++KSC       LG+ VH  +  SG + D  V   L++ Y+K  +
Sbjct: 35  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 94

Query: 157 VDVARKVFDRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
            + AR +F+ M +K  +V+W++M+S +  N    +AI  F  M + G  P+      V+ 
Sbjct: 95  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 154

Query: 216 ACAQLGDIDLGRWVHEFIVGQG-LDVNVVLATSLINMYAR-CGNVSKAREIFDMMSELNV 273
           AC+      +G  ++ F+V  G L+ +V +   LI+M+ +  G++  A ++FD M E N+
Sbjct: 155 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNL 214

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
           + WT MI+ +   G   +A++LF  M   G  P+  T+ +VLSAC   GL+  G ++ + 
Sbjct: 215 VTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 274

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRA---GLLNEAYKFVKDVIGEKPAPAV--WTAMLGA 386
           + +  GL   V     +VD++ +    G ++++ K    V  + P   V  WTA++ A
Sbjct: 275 VIR-LGLALDVCVGCSLVDMYAKCAADGSVDDSRK----VFEQMPEHNVMSWTAIITA 327



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 104/196 (53%), Gaps = 4/196 (2%)

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A    +LM      PD TT   +L +C +  +  LG+ VH  ++  GL+++ V+  +LI+
Sbjct: 28  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 87

Query: 251 MYARCGNVSKAREIFD-MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           +Y++CG+   AR IF+ M ++ ++++W+AM+S +  +    +A+  F  M   G  PN  
Sbjct: 88  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 147

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR-AGLLNEAYKFVK 368
            F AV+ AC++A     G  ++  + +   L   V     ++D+F + +G L  AYK V 
Sbjct: 148 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK-VF 206

Query: 369 DVIGEKPAPAVWTAML 384
           D + E+     WT M+
Sbjct: 207 DKMPERNL-VTWTLMI 221


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/580 (41%), Positives = 359/580 (61%), Gaps = 5/580 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P++    A LK+   L+  +    VH   +   Y R   +   LL L   +G I  AQ+
Sbjct: 202 RPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQ 261

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS-PSNYTFSAVIKSCAHLS 120
            F  +P  D   ++ +I R ++++ S ++L  + RM  S++  P+N+TF++V+++CA L 
Sbjct: 262 FFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLV 321

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
           +LNLG  +H  V   G DS++ V  AL++ YAK   ++ + K+F    +K+ VAWN++I 
Sbjct: 322 LLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIV 381

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY Q G  ++A+ LF+ M    + P   T   VL A A L  ++ GR +H   +    + 
Sbjct: 382 GYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNK 441

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           + V+A SLI+MYA+CG +  AR  FD M + + ++W A+I GY +HG G EA+ LF  M+
Sbjct: 442 DSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQ 501

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
               +PN +TFV VLSAC++AGL+ +G   F SM Q+YG+ P +EH+ CMV L GR+G  
Sbjct: 502 QSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQF 561

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
           +EA K + + I  +P+  VW A+LGAC +HKN DLG   A+ +L +EP++   +V+LSN+
Sbjct: 562 DEAVKLIGE-IPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNM 620

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA A R D V  VR  M +K +KK  G S VE     + F++GD SHPN   I+  L+ L
Sbjct: 621 YATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWL 680

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
             + R+AGYVP+    + ++E++E+E  L  HSE+LALAFGL++   G +IRI+KNLR+C
Sbjct: 681 YKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRIC 740

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           VDCH+ IK +S    REI++RD  RFHHF++G CSC DYW
Sbjct: 741 VDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 175/343 (51%), Gaps = 2/343 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + +H H++  G          LL+     GF+  A ++F  +P  ++  F TL    S++
Sbjct: 23  KSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRS 82

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           +    +     R+       + + F+ ++K    + + +   +VH +V+  G+ +D  V 
Sbjct: 83  HQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVG 142

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL++ Y+   NVD AR+VFD +  K +V+W  M++ Y +N   ++++ LF  MR  G  
Sbjct: 143 TALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYR 202

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P++ T    L +C  L    +G+ VH   +    D ++ +  +L+ +Y + G +++A++ 
Sbjct: 203 PNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQF 262

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGL 323
           F+ M + ++I W+ MIS Y       EA+ELF RMR    V PNN TF +VL ACA   L
Sbjct: 263 FEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVL 322

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           +  G+++ + + +  GL   V     ++D++ + G +  + K 
Sbjct: 323 LNLGNQIHSCVLK-VGLDSNVFVSNALMDVYAKCGEIENSVKL 364



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 135/267 (50%), Gaps = 13/267 (4%)

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           N G+++HCH+   G   DL  Q  L+N Y     ++ A K+FD MP  + V++ ++  G+
Sbjct: 20  NAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGF 79

Query: 183 EQN-GFAKEAIGLFNLMRD-FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
            ++  F +    L  L R+ + VN    T +  L     L D  L   VH ++   G   
Sbjct: 80  SRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLS--VHAYVYKLGHQA 137

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +  + T+LI+ Y+ CGNV  AR++FD +   ++++WT M++ Y  +    +++ LF +MR
Sbjct: 138 DAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMR 197

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ---EYGLLPGVEHHVCMVDLFGRA 357
             G RPNN T  A L +C      + G  V     +   +  L  G+     +++L+ ++
Sbjct: 198 IMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIA----LLELYTKS 253

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAML 384
           G + EA +F +++  +   P  W+ M+
Sbjct: 254 GEIAEAQQFFEEMPKDDLIP--WSLMI 278


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/556 (40%), Positives = 346/556 (62%), Gaps = 1/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + VH   +   Y     +   LL L   +G I  AQR+F  +P  D   ++ +I R +++
Sbjct: 257 KSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQS 316

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           + S ++L  + RM  +++ P+N+TF++V+++CA    L+LG+ +H  V   G +S++ V 
Sbjct: 317 DRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVS 376

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            A+++ YAK   ++ + K+F+ +PD++ V WN++I GY Q G  + A+ LF  M +  + 
Sbjct: 377 NAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQ 436

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P   T   VL A A L  ++ G  +H   +    + + V+A SLI+MYA+CG ++ AR  
Sbjct: 437 PTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLT 496

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD M++ + ++W AMI GY MHG   EA+ LF  M+    +PN +TFV VLSAC++AGL+
Sbjct: 497 FDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLL 556

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            +G   F SM ++Y + P +EH+ CMV L GR G  +EA K + + I  +P+  VW A+L
Sbjct: 557 YKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGE-IAYQPSVMVWRALL 615

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GAC +HK  DLG   A+H+L +EP +   +V+LSN+YA AGR D V  VR  M +K ++K
Sbjct: 616 GACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRK 675

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S VE     + FS+GD SHP+   I   L+ L  + R+AGYVP+  + + +++++E
Sbjct: 676 EPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDE 735

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E  L  HSE+LALA+GL+RT    +IRI+KNLR+C+DCH+ +K IS    REI++RD  
Sbjct: 736 KERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDIN 795

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF+ G CSC DYW
Sbjct: 796 RFHHFRHGVCSCGDYW 811



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 194/365 (53%), Gaps = 5/365 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +HA +   G+     + T L+      G +  A+ +F  I   D   +  ++   ++  F
Sbjct: 158 LHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCF 217

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             +SL  + +M +    P+N+T S  +KSC  L   N+G++VH       YD DL V  A
Sbjct: 218 YEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIA 277

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L+  YAKS  +  A+++F+ MP   ++ W+ MI+ Y Q+  +KEA+ LF  MR   V P+
Sbjct: 278 LLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPN 337

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
           + T   VL ACA    +DLG+ +H  ++  GL+ NV ++ +++++YA+CG +  + ++F+
Sbjct: 338 NFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFE 397

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            + + N + W  +I GY   G G  A+ LF  M  H ++P  VT+ +VL A A    ++ 
Sbjct: 398 ELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEP 457

Query: 327 GHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           G ++ + +++  Y     V +   ++D++ + G +N+A +   D + ++   + W AM+ 
Sbjct: 458 GLQIHSLTIKTMYNKDTVVANS--LIDMYAKCGRINDA-RLTFDKMNKRDEVS-WNAMIC 513

Query: 386 ACKMH 390
              MH
Sbjct: 514 GYSMH 518



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 188/366 (51%), Gaps = 3/366 (0%)

Query: 7   HSPAY--EAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           HS A+  + I++ G      + +H H++  G          LL+    +  +  A ++F 
Sbjct: 35  HSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFD 94

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            +P  ++  F TL    S+ +    +L F  R+       + + F+ ++K    + + +L
Sbjct: 95  EMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHL 154

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
              +H  V+  G+ +D  V  AL++ Y+   NVDVAR VFD +  K +V+W  M++ Y +
Sbjct: 155 CWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAE 214

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           N F +E++ LFN MR  G  P++ T    L +C  L   ++G+ VH   +    D ++ +
Sbjct: 215 NCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFV 274

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             +L+ +YA+ G +  A+ +F+ M + ++I W+ MI+ Y       EA++LF RMR   V
Sbjct: 275 GIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSV 334

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
            PNN TF +VL ACA +  +  G ++ + + + +GL   V     ++D++ + G +  + 
Sbjct: 335 VPNNFTFASVLQACASSVSLDLGKQIHSCVLK-FGLNSNVFVSNAIMDVYAKCGEIENSM 393

Query: 365 KFVKDV 370
           K  +++
Sbjct: 394 KLFEEL 399



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 7/185 (3%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           + QP    Y ++L+A   L  L+   Q+H+  I   Y +   +   L+ +    G I  A
Sbjct: 434 DMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDA 493

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           +  F  +   D   +N +I   S    S ++L  +  M  ++  P+  TF  V+ +C++ 
Sbjct: 494 RLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNA 553

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQ--AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWN 176
            +L  G+A H       YD    ++    +V    +    D A K+   +    SV+ W 
Sbjct: 554 GLLYKGQA-HFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWR 612

Query: 177 SMISG 181
           +++  
Sbjct: 613 ALLGA 617


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/582 (39%), Positives = 344/582 (59%), Gaps = 10/582 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    Y  +L A   L  L+   Q+HA ++ + +     + T L  +    G +  A+ 
Sbjct: 243 RPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDARE 302

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F C+P+ D   +NT+I     +    ++   + RM+   ++P   T+ A++ +CA    
Sbjct: 303 VFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGG 362

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +H      G  SD+    AL+N Y+K+ ++  AR+VFDRMP + VV+W +++ G
Sbjct: 363 LACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGG 422

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y   G   E+   F  M   GV  +  T +CVL AC+    +  G+ +H  +V  G+  +
Sbjct: 423 YADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFAD 482

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +A +L++MY +CG+V  A  + + MS  +V+ W  +I G   +G G EA++ F  M++
Sbjct: 483 LAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKS 542

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             +RPN  TFV V+SAC    LV+EG R FASMR++YG++P  +H+ CMVD+  RAG L 
Sbjct: 543 EEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLG 602

Query: 362 EAYKFVKDVIGE---KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           EA    +DVI     KP+ A+W A+L AC+ H N ++G + AE  L +EP+N G YV LS
Sbjct: 603 EA----EDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLS 658

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
            IYA AG    V  +R +M ++G+KK  G S +EV  + + F  GD+SHP T EIY  L+
Sbjct: 659 FIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELE 718

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
            L  + +  GYVP++   MH+L++E +E ++ +HSEKLA+A+GL+ T P   IR+ KNLR
Sbjct: 719 ALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLR 778

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+A KFIS  T REII RD  RFHHFK G CSC DYW
Sbjct: 779 VCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 202/390 (51%), Gaps = 10/390 (2%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           K  Q  S  Y  +L++  + K L   +QVH H++  G   +  ++  LL L    G +  
Sbjct: 38  KGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNE 97

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+R+F    +     +N +I   +      ++   +  M    + P  +TF +++ +C+ 
Sbjct: 98  ARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSS 157

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
            + LN GR VH  V  +G  ++  V  AL++ YAK  +V  AR+VFD M  +  V+W ++
Sbjct: 158 PAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTL 217

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
              Y ++G+A+E++  ++ M   GV P   T + VL+AC  L  ++ G+ +H  IV    
Sbjct: 218 TGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEH 277

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             +V ++T+L  MY +CG V  ARE+F+ +   +VIAW  MI G    G   EA  +FHR
Sbjct: 278 HSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHR 337

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M    V P+ VT++A+LSACA  G +  G  + A   ++ GL+  V     +++++ +AG
Sbjct: 338 MLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD-GLVSDVRFGNALINMYSKAG 396

Query: 359 LLNEAYKFVKDVIGEKPAPAV--WTAMLGA 386
            + +A    + V    P   V  WTA++G 
Sbjct: 397 SMKDA----RQVFDRMPKRDVVSWTALVGG 422



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 204/390 (52%), Gaps = 16/390 (4%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + +IL A      L   ++VH  ++ AG   + ++   L+S+    G +  A+R
Sbjct: 142 EPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARR 201

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  + S D   + TL    +++ ++ +SL  Y  M+   + PS  T+  V+ +C  L+ 
Sbjct: 202 VFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAA 261

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +H  +  S + SD+ V  AL   Y K   V  AR+VF+ +P++ V+AWN+MI G
Sbjct: 262 LEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGG 321

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
              +G  +EA G+F+ M    V PD  T + +L+ACA+ G +  G+ +H   V  GL  +
Sbjct: 322 LVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSD 381

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V    +LINMY++ G++  AR++FD M + +V++WTA++ GY   G   E+   F +M  
Sbjct: 382 VRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQ 441

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV  N +T++ VL AC++   ++ G  + A + +  G+   +     ++ ++ + G + 
Sbjct: 442 QGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKA-GIFADLAVANALMSMYFKCGSVE 500

Query: 362 EAYKF-----VKDVIGEKPAPAVWTAMLGA 386
           +A +       +DV+        W  ++G 
Sbjct: 501 DAIRVSEGMSTRDVV-------TWNTLIGG 523


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/573 (40%), Positives = 351/573 (61%), Gaps = 15/573 (2%)

Query: 21  LKPLQQVHAHLIVAGYGRSR--SMLTKLLSLVCDAG-----FITYAQRIFFCIPSP-DSF 72
           L+ L Q+HA  + AG G     + +T+LL+L  + G      + YA+++F  IP P D  
Sbjct: 41  LRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVI 100

Query: 73  LFNTLIIRNSKANFSTDSLL----FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
            +NTL+   ++              + RM+   ++P  YTF +++K+CA       GR  
Sbjct: 101 WYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQA 160

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H     +G     +V   L+N YA+  +V  AR +FDRM  + VV++N+MI+   ++   
Sbjct: 161 HGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLP 220

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
            EA+ LF  M+  G+ P S T + VL+ACA LG ++LGRW+H++I    LD  V + T+L
Sbjct: 221 GEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTAL 280

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           I+MYA+CG++  A  +F  M   +  AW+ M+  Y  HGYG EA+ +F  M+  G++P++
Sbjct: 281 IDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDD 340

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           VTF+ VL AC+H+G+V EG + F SMR EYG++ G++H+ C+ DL  R+G L  AYKF+ 
Sbjct: 341 VTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFI- 398

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
           D +  KP   +W  +L AC  H + D+G  V E +L ++  + G YV+ SN+ A  GR +
Sbjct: 399 DELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWE 458

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
            + +VR +M +KG+ K  G S++E+D   + F  GD SHP++ E  + +DE++ + +  G
Sbjct: 459 EMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVG 518

Query: 489 YVPESESAMH-ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           YVP +    H E+ EEE+  SLRYHSEKLA++FGL+ T+PG T+RIVKNLR+C DCHS  
Sbjct: 519 YVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMA 578

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           K +S+  NR II+RD  RFHHF+ G CSC DYW
Sbjct: 579 KLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/578 (38%), Positives = 359/578 (62%), Gaps = 8/578 (1%)

Query: 9   PAYEAILKAGPRLKPL------QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P++  I+   P +  L      +++H + + +G+    ++ T L+ +    G +  A+++
Sbjct: 234 PSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQL 293

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   +   +N++I    +     +++L +++M+   + P++ +    + +CA L  L
Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDL 353

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             GR +H      G D ++ V  +L++ Y K   VD A  +F ++  +++V+WN+MI G+
Sbjct: 354 ERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGF 413

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            QNG   +A+  F+ MR   V PD+ T V V+ A A+L      +W+H  ++   LD NV
Sbjct: 414 AQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNV 473

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            + T+L++MYA+CG +  AR IFDMMSE +V  W AMI GYG HG+G  A+ELF  M+  
Sbjct: 474 FVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKG 533

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
            ++PN VTF++V+SAC+H+GLV+ G + F  M++ Y +   ++H+  MVDL GRAG LNE
Sbjct: 534 TIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNE 593

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A+ F+   +  KPA  V+ AMLGAC++HKN +   + AE L  + P++ G++V+L+NIY 
Sbjct: 594 AWDFIMQ-MPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYR 652

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            A   ++V  VR  M+++GL+K  G S VE+  + + F  G  +HP++ +IY +L++L+ 
Sbjct: 653 AASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLIC 712

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             +EAGYVP++   +  +E + +E  L  HSEKLA++FGL+ T+ G TI + KNLR+C D
Sbjct: 713 HIKEAGYVPDTNLVLG-VENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCAD 771

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+A K+IS+ T REI+VRD  RFHHFK G+CSC DYW
Sbjct: 772 CHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 113/327 (34%), Positives = 186/327 (56%), Gaps = 1/327 (0%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           +L+    LK L+Q+   +   G  +     TKL+SL C  G +  A R+F  I S  + L
Sbjct: 43  LLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVL 102

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           ++T++   +K +    +L F+ RM   ++ P  Y F+ ++K C   + L +G+ +H  + 
Sbjct: 103 YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLV 162

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            SG+  DL     L N YAK   V+ ARKVFDRMP++ +V+WN++++GY QNG A+ A+ 
Sbjct: 163 KSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALE 222

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           +   M +  + P   T V VL A + L  I +G+ +H + +  G D  V ++T+L++MYA
Sbjct: 223 MVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYA 282

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +CG++  AR++FD M E NV++W +MI  Y  +    EA+ +F +M   GV+P +V+ + 
Sbjct: 283 KCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMG 342

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGL 340
            L ACA  G ++ G R    +  E GL
Sbjct: 343 ALHACADLGDLERG-RFIHKLSVELGL 368



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 211/392 (53%), Gaps = 9/392 (2%)

Query: 12  EAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS 71
           EA L+ G      +++H  L+ +G+      +T L ++      +  A+++F  +P  D 
Sbjct: 148 EAELRVG------KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDL 201

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
             +NT++   S+   +  +L   + M   N+ PS  T  +V+ + + L ++++G+ +H +
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGY 261

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
              SG+DS +++  ALV+ YAK  +++ AR++FD M +++VV+WNSMI  Y QN   KEA
Sbjct: 262 AMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEA 321

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           + +F  M D GV P   + +  L ACA LGD++ GR++H+  V  GLD NV +  SLI+M
Sbjct: 322 MLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISM 381

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           Y +C  V  A  +F  +    +++W AMI G+  +G   +A+  F +MR+  V+P+  T+
Sbjct: 382 YCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTY 441

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           V+V++A A   +      +   + +   L   V     +VD++ + G +  A + + D++
Sbjct: 442 VSVITAIAELSITHHAKWIHGVVMRS-CLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMM 499

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
            E+     W AM+     H      +E+ E +
Sbjct: 500 SERHV-TTWNAMIDGYGTHGFGKAALELFEEM 530


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/592 (38%), Positives = 340/592 (57%), Gaps = 37/592 (6%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H+H+   G      +   L+++ C    +  A+ IF  +   D   ++ +I   +++
Sbjct: 278 RRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQS 337

Query: 85  NF----STDSLL-FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
            +    S D +     RM    + P+  TF +++++C     L  GR +H  +   G++ 
Sbjct: 338 GYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFEL 397

Query: 140 DLHVQAALVNFYAKSNNV-------------------------------DVARKVFDRMP 168
           D  +Q A+ N YAK  ++                                 A KVF  MP
Sbjct: 398 DRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMP 457

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
            ++VV+WN MI+GY QNG   +   L + M+  G  PD  T + +L AC  L  ++ G+ 
Sbjct: 458 TRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKL 517

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           VH   V  GL+ + V+ATSLI MY++CG V++AR +FD MS  + +AW AM++GYG HG 
Sbjct: 518 VHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGD 577

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
           G EAV+LF RM    V PN +T  AV+SAC+ AGLVQEG  +F  M++++ + P  +H+ 
Sbjct: 578 GLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYG 637

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
           CMVDL GRAG L EA +F++ +  E P  +VW A+LGACK H N  L    A H+L +EP
Sbjct: 638 CMVDLLGRAGRLQEAEEFIQSMPCE-PDISVWHALLGACKSHNNVQLAERAAHHILELEP 696

Query: 409 ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHP 468
                Y+ LSNIYA AGR D    VR +M  +GLKK  G S++E+D + + F   D +HP
Sbjct: 697 SYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHP 756

Query: 469 NTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPG 528
             + I+  L+ L    +EAGY P+    +H++++ ++E +L +HSEKLA+A+GL++T  G
Sbjct: 757 EIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSG 816

Query: 529 MTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             IRI+KNLR+C DCH+A KFIS    REI+ RD  RFH+F  G+CSC D+W
Sbjct: 817 TPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 150/557 (26%), Positives = 265/557 (47%), Gaps = 54/557 (9%)

Query: 3   NKQPHSPAYEAILKAGPR---LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           N +P+   + +ILKA      L+  +++H  +   G     ++ T L+++    G I+ A
Sbjct: 152 NIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVA 211

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
             +F  +   +   +  +I  N++     ++   Y +M+ + ISP+  TF +++ SC   
Sbjct: 212 CEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTP 271

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             LN GR +H H+   G ++D+ V  AL+  Y K N+V  AR++FDRM  + V++W++MI
Sbjct: 272 EALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMI 331

Query: 180 SGYEQNGFA-KEAIG----LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           +GY Q+G+  KE+I     L   MR  GV P+  T + +L AC   G ++ GR +H  + 
Sbjct: 332 AGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELS 391

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA---------------- 278
             G +++  L T++ NMYA+CG++ +A ++F  M+  NV+AWT+                
Sbjct: 392 KVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEK 451

Query: 279 ---------------MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
                          MI+GY  +G   +  EL   M+A G +P+ VT + +L AC     
Sbjct: 452 VFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAG 511

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           ++ G  V A   +  GL         ++ ++ + G + EA + V D +  +   A W AM
Sbjct: 512 LERGKLVHAEAVK-LGLESDTVVATSLIGMYSKCGQVAEA-RTVFDKMSNRDTVA-WNAM 568

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI--MIQKG 441
           L     H +    V++ + +L  E  +P   + L+ + +   R   V+  R I  M+Q+ 
Sbjct: 569 LAGYGQHGDGLEAVDLFKRMLK-ERVSPNE-ITLTAVISACSRAGLVQEGREIFRMMQED 626

Query: 442 L-----KKHVGYSTVEVDQKNYLFSMGD--KSHPNTNEIYQYLDELMGRCREAGYVPESE 494
                 K+H G     + +   L    +  +S P   +I  +   L+G C+    V  +E
Sbjct: 627 FKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVW-HALLGACKSHNNVQLAE 685

Query: 495 SAMHELEEEEREYSLRY 511
            A H + E E  Y+  Y
Sbjct: 686 RAAHHILELEPSYASVY 702



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 185/334 (55%), Gaps = 8/334 (2%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           +  A+++F  +   D   ++++I   +  N    +   + RM  +NI P+  TF +++K+
Sbjct: 107 VASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKA 166

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           C + SIL  GR +H  V   G ++D+ V  AL+  Y+K   + VA +VF +M +++VV+W
Sbjct: 167 CNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSW 226

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
            ++I    Q+    EA  L+  M   G++P++ T V +L +C     ++ GR +H  I  
Sbjct: 227 TAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE 286

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG-----T 290
           +GL+ ++++A +LI MY +C +V +AREIFD MS+ +VI+W+AMI+GY   GY       
Sbjct: 287 RGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESID 346

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350
           E  +L  RMR  GV PN VTF+++L AC   G +++G ++ A +  + G          +
Sbjct: 347 EVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAEL-SKVGFELDRSLQTAI 405

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            +++ + G + EA +    +  +      WT+ L
Sbjct: 406 FNMYAKCGSIYEAEQVFSKMANKN--VVAWTSFL 437



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 151/284 (53%), Gaps = 13/284 (4%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T+  VI+ CA       G+ VH  +   G + D+++  +L+NFY+K  +V  A +VF RM
Sbjct: 58  TYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRM 117

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
             + VV W+SMI+ Y  N    +A   F  M D  + P+  T + +L AC     ++ GR
Sbjct: 118 TLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGR 177

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +H  +   G++ +V +AT+LI MY++CG +S A E+F  M+E NV++WTA+I     H 
Sbjct: 178 KIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHR 237

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
              EA EL+ +M   G+ PN VTFV++L++C     +  G R+ + +  E GL   +   
Sbjct: 238 KLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHI-SERGLETDMIVA 296

Query: 348 VCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAVWTAMLGA 386
             ++ ++ +   + EA +       +DVI        W+AM+  
Sbjct: 297 NALITMYCKCNSVQEAREIFDRMSKRDVIS-------WSAMIAG 333



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 137/260 (52%), Gaps = 6/260 (2%)

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G  +EAI L  +++  G+  +S T  CV+  CA+    + G+ VH+ +   G+++++ L 
Sbjct: 35  GRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLG 94

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
            SLIN Y++  +V+ A ++F  M+  +V+ W++MI+ Y  + +  +A + F RM    + 
Sbjct: 95  NSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIE 154

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           PN +TF+++L AC +  ++++G ++  ++ +  G+   V     ++ ++ + G ++ A +
Sbjct: 155 PNRITFLSILKACNNYSILEKGRKIH-TIVKAMGMETDVAVATALITMYSKCGEISVACE 213

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLSNIYAL 423
               +         WTA++ A   H+  +   E+ E +L   + P N   +V L N    
Sbjct: 214 VFHKMTERNVVS--WTAIIQANAQHRKLNEAFELYEQMLQAGISP-NAVTFVSLLNSCNT 270

Query: 424 AGRMDRVEVVRNIMIQKGLK 443
              ++R   + + + ++GL+
Sbjct: 271 PEALNRGRRIHSHISERGLE 290


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/573 (40%), Positives = 351/573 (61%), Gaps = 15/573 (2%)

Query: 21  LKPLQQVHAHLIVAGYGRSR--SMLTKLLSLVCDAG-----FITYAQRIFFCIPSP-DSF 72
           L+ L Q+HA  + AG G     + +T+LL+L  + G      + YA+++F  IP P D  
Sbjct: 41  LRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVV 100

Query: 73  LFNTLIIRNSKANFSTDSLL----FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
            +NTL+   ++              + RM+   ++P  YTF +++K+CA       GR  
Sbjct: 101 WYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQA 160

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H     +G     +V   L+N YA+  +V  AR +FDRM  + VV++N+MI+   ++   
Sbjct: 161 HGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLP 220

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
            EA+ LF  M+  G+ P S T + VL+ACA LG ++LGRW+H++I    LD  V + T+L
Sbjct: 221 GEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTAL 280

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           I+MYA+CG++  A  +F  M   +  AW+ M+  Y  HGYG EA+ +F  M+  G++P++
Sbjct: 281 IDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDD 340

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           VTF+ VL AC+H+G+V EG + F SMR EYG++ G++H+ C+ DL  R+G L  AYKF+ 
Sbjct: 341 VTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFI- 398

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
           D +  KP   +W  +L AC  H + D+G  V E +L ++  + G YV+ SN+ A  GR +
Sbjct: 399 DELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWE 458

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
            + +VR +M +KG+ K  G S++E+D   + F  GD SHP++ E  + +DE++ + +  G
Sbjct: 459 EMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVG 518

Query: 489 YVPESESAMH-ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           YVP +    H E+ EEE+  SLRYHSEKLA++FGL+ T+PG T+RIVKNLR+C DCHS  
Sbjct: 519 YVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMA 578

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           K +S+  NR II+RD  RFHHF+ G CSC DYW
Sbjct: 579 KLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/596 (39%), Positives = 350/596 (58%), Gaps = 45/596 (7%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           ++HA  + A   + +++  +L      +G +  A  +    P P +  + + I  +S   
Sbjct: 42  EIHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRG 101

Query: 86  FSTDSLLFYRRMIVS--NISPSNYTFSAVIKSCAHLSILNLGRAVHCHV----------- 132
               +L     M++S   + P+ +T SA + +C  L++   GRA+H +            
Sbjct: 102 LHRAALALLSEMLLSRHGLLPTAHTLSASLPACGCLAV---GRALHGYAVKLALSGEPYV 158

Query: 133 -------------------FVSGYDSDLHVQA--ALVNFYAKSNNVDVARKVFDRMPDKS 171
                                 G   D HV +  A+++ YAK   +D AR +FD +P K 
Sbjct: 159 ATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKD 218

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           +V WN+M+ GY Q+G   EA+ LF  M   GV PD  + V  L+A AQLG  + GRW+H 
Sbjct: 219 LVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHS 278

Query: 232 FIVGQG----LDVNVVLATSLINMYARCGNVSKAREIFDMMS---ELNVIAWTAMISGYG 284
           F+   G    + +N  + T+L++MY +CG++ +A  +F  +    + +V+AW AMI+GY 
Sbjct: 279 FVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYA 338

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
           MHG   EA+E F ++RA G+ P ++TF+ VL+AC+H+GLV EG  +FA+M +EYG++P V
Sbjct: 339 MHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKV 398

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           EH+ CMVDL GRAG + EA+  V+  +  KP  A+W ++LGAC++HKN  LG  VA++L+
Sbjct: 399 EHYGCMVDLLGRAGRVEEAFDLVQS-MKAKPDAAMWASLLGACRLHKNLALGQRVADYLV 457

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
                N G YV+LSN+YA AG+   V  VR++M   G++K  G S VEV ++   F  GD
Sbjct: 458 GNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGD 517

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
           +SHP + EIY  L+E+    R  G+VP +E  +H+L++  +E +L  HSEKLALAFGL+ 
Sbjct: 518 RSHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALAVHSEKLALAFGLIS 577

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           T P   I+IVKNLR C DCH+ +K +S AT R+I+ RDR RFHHF  GSCSC DYW
Sbjct: 578 TPPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 136/321 (42%), Gaps = 48/321 (14%)

Query: 110 SAVIKSCAHLSILNLGRA--VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           +A++  CA  S     RA  +H     +  D D  V   L   YA S  +D+A  +  R 
Sbjct: 28  AALLAGCASAS-----RAAEIHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRT 82

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFN--LMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           PD + V + S I  +   G  + A+ L +  L+   G+ P + T    L AC   G + +
Sbjct: 83  PDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPAC---GCLAV 139

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINM--------------------------------YA 253
           GR +H + V   L     +AT+L+ M                                YA
Sbjct: 140 GRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYA 199

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           + G +  AR +FD +   +++ W AM+ GY  HG  +EA+ LF +M   GV P+ V+ V 
Sbjct: 200 KMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVL 259

Query: 314 VLSACAHAGLVQEG---HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
            LSA A  G  + G   H   A+  +   +         +VD++ + G L EA    +D+
Sbjct: 260 ALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDL 319

Query: 371 IGEKPAPAV-WTAMLGACKMH 390
            G      V W AM+    MH
Sbjct: 320 GGGGDRDVVAWNAMINGYAMH 340


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/579 (40%), Positives = 345/579 (59%), Gaps = 37/579 (6%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
            P    Y  +LKA    + L    Q+HA ++  G   +  +   L+S+    G +  A R
Sbjct: 134 DPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACR 193

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +   +P  D   +N+L+   ++     D+L   + M +  + P   T ++++ +  +  +
Sbjct: 194 VLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCL 253

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
                                            +NV   +++F ++ +KS+V+WN MI+ 
Sbjct: 254 ---------------------------------DNVSFVKEMFMKLANKSLVSWNVMIAV 280

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y  N    EA+ +F  M D  V+PD+ +   VL AC  L  + LGR +HE++V + L  N
Sbjct: 281 YMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPN 340

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           ++L  +LI+MYA+CG +  ARE+FD M   +V++WT+MIS YGM+G G +AV LF RM+ 
Sbjct: 341 LLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQD 400

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ P+++ FV+VLSAC+HAGL+ EG   F  M +E  ++P +EH VCMVDL GRAG ++
Sbjct: 401 LGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVD 460

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EAY F+K +  E P   VW A+L AC+++ N  +G+  A+ L  + PE  G+YV+LSNIY
Sbjct: 461 EAYGFIKQMPME-PNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIY 519

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AGR + V  VR+IM  KG+KK  G S  E+D + + F  GD+SHP + +IY+ LD  +
Sbjct: 520 AKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSV 579

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
           G+ +EAGYVPE++SA+H++EEE++E  L  HSEKLA+AF ++ T+PG  IRI KNLR+C 
Sbjct: 580 GKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCG 639

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH A K IS    REI +RD  RFHHF  G CSC DYW
Sbjct: 640 DCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 4/190 (2%)

Query: 138 DSDLHVQAAL----VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
           D DLH   +L    +  YA        R +FD +P K+VV +N MI  Y  N    +A+ 
Sbjct: 64  DHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALL 123

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           +F  M   G++PD  T  CVL A +   D+ +G  +H  +V  GLD+NV +   LI+MY 
Sbjct: 124 VFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYG 183

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +CG + +A  + D M   +V++W ++++G   +G   +A+E+   M   G++P+  T  +
Sbjct: 184 KCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMAS 243

Query: 314 VLSACAHAGL 323
           +L A  +  L
Sbjct: 244 LLPAVTNTCL 253


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/579 (39%), Positives = 356/579 (61%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKA--GPRLKPL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
            P+   +  +LKA  G  ++ + +Q+H      G+G +  +   L+S+    G I+YA+ 
Sbjct: 82  HPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARI 141

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +       + ++I    +     ++L  ++ M   N+ P      +V+ +  ++  
Sbjct: 142 VFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVED 201

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+++H  V   G + +  +  +L   YAK   V+VAR  F+RM   +++ WN+MISG
Sbjct: 202 LGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISG 261

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y  NG+ +EAI LF  M    +  DS T    + A AQ+G ++L RW+  +I       +
Sbjct: 262 YANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDD 321

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             + T LI+MYA+CG++  AR +FD +++ +V+ W+ MI GYG+HG+G EA+ L++ M+ 
Sbjct: 322 TFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQ 381

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV PN+ TF+ +L+AC ++GLV+EG  +F  M  ++G+ P  +H+ C+VDL GRAG LN
Sbjct: 382 AGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPHHQHYSCVVDLLGRAGYLN 440

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           +AY F+   +  KP  +VW A+L ACK+H+   LG   AE L  ++P N GHYV LSN+Y
Sbjct: 441 QAYDFIMS-MPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLY 499

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A A    RV  VR +M QKGL K +G+S++E++     F +GD+SHP + EI++ LD L 
Sbjct: 500 ASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLE 559

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            R + AGYVP  ES +H+L  EE E +L +HSE+LA+A+G++ T+PG T+RI KNLR C+
Sbjct: 560 KRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACI 619

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +CHSAIK IS   +REII+RD  RFHHFK G CSC D+W
Sbjct: 620 NCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 200/374 (53%), Gaps = 13/374 (3%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           K L QV+  LIV+G  + R ++ K ++     G + YA + F  +  PD  L+N +I   
Sbjct: 1   KHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGY 60

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           ++ N     +  Y  M +S + P+ +TF  V+K+C   S+  +G+ +H   F  G+ S++
Sbjct: 61  TQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNV 120

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            VQ +LV+ YAK   +  AR VFD++ D++VV+W S+ISGY QNG   EA+ +F  MR  
Sbjct: 121 FVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQC 180

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
            V PD    V V+ A   + D+  G+ +H  +   GL+    +  SL  MYA+ G V  A
Sbjct: 181 NVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVA 240

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           R  F+ M + N+I W AMISGY  +GYG EA++LF  M    +R +++T  + + A A  
Sbjct: 241 RFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQV 300

Query: 322 GLVQ-----EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           G ++     +G+   +  R +  +  G      ++D++ + G +  A + V D + +K  
Sbjct: 301 GSLELARWLDGYISKSEYRDDTFVNTG------LIDMYAKCGSIYLA-RCVFDRVADKDV 353

Query: 377 PAVWTAMLGACKMH 390
             +W+ M+    +H
Sbjct: 354 -VLWSVMIMGYGLH 366


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/522 (40%), Positives = 329/522 (63%), Gaps = 3/522 (0%)

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           ++IF  +P  D   +NT+I  N++     ++L   R M  +N+ P ++T S+V+   A  
Sbjct: 254 RKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAEN 313

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             ++ G+ +H      G D++++V ++L++ YAK   V  + +VF  + ++  ++WNS+I
Sbjct: 314 VDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSII 373

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           +G  QNG   E +  F  M    + P S +   ++ ACA L  + LG+ +H +I   G D
Sbjct: 374 AGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 433

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            N+ +A+SL++MYA+CGN+  AR+IFD M   ++++WTAMI G  +HG+  +A+ELF +M
Sbjct: 434 ENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQM 493

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
           +  G+ PN V F+AVL+AC+HAGLV E  + F SM  ++G+ PGVEH+  + DL GRAG 
Sbjct: 494 KTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGR 553

Query: 360 LNEAYKFVKDV-IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           L EAY F+  + IG  P  +VW  +L AC++HKN D+  +VA  +L V+P+N G Y++L+
Sbjct: 554 LEEAYDFICGMPIG--PTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLA 611

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           NIY+ A R       R  + + G++K    S +EV  K Y F  GD+SHP   +I + ++
Sbjct: 612 NIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAME 671

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
            LM    + GYVP++    H++EEE+++Y +  HSE+LA+ FG++ T  G TIR+ KNLR
Sbjct: 672 VLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKNLR 731

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+A KFIS    REI+VRD  RFHHFK G+CSC DYW
Sbjct: 732 VCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 142/262 (54%), Gaps = 15/262 (5%)

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
           S +VD  RK+F+ MP+K +V+WN++I+G  +NG   E + +   M    + PDS T   V
Sbjct: 247 SMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSV 306

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           L   A+  DI  G+ +H   + QGLD  V +A+SLI+MYA+C  V  +  +F +++E + 
Sbjct: 307 LPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDG 366

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
           I+W ++I+G   +G   E ++ F +M    ++P + +F +++ ACAH   +  G ++   
Sbjct: 367 ISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGY 426

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEKPAPAVWTAMLGACK 388
           + +  G    +     +VD++ + G +  A +      ++D++        WTAM+  C 
Sbjct: 427 ITRN-GFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVS-------WTAMIMGCA 478

Query: 389 MHKNFDLGVEVAEHLLS--VEP 408
           +H +    +E+ E + +  +EP
Sbjct: 479 LHGHALDAIELFEQMKTEGIEP 500



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 172/348 (49%), Gaps = 28/348 (8%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H   I  G      + + L+ +      +  + R+F  +   D   +N++I    + 
Sbjct: 320 KEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQN 379

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               + L F+R+M+++ I P +Y+FS+++ +CAHL+ L+LG+ +H ++  +G+D ++ + 
Sbjct: 380 GLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIA 439

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ++LV+ YAK  N+  AR++FDRM  + +V+W +MI G   +G A +AI LF  M+  G+ 
Sbjct: 440 SSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIE 499

Query: 205 PDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           P+    + VL AC+  G +D   ++ +   +  G+   V    ++ ++  R G + +A  
Sbjct: 500 PNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEA-- 557

Query: 264 IFDMMSELNV----IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV-TFVAVLSAC 318
            +D +  + +      W  ++S   +H     A ++ +R+    V P N   ++ + +  
Sbjct: 558 -YDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILE--VDPKNTGAYILLANIY 614

Query: 319 AHAGLVQEGHRVFASMRQE-----------------YGLLPGVEHHVC 349
           + A   +E  +  AS+R+                  Y  + G E H C
Sbjct: 615 SAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPC 662



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 166/366 (45%), Gaps = 43/366 (11%)

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           R+F  +  P +  + ++I   +       SL  +  M+ S + P +  F +V+K+CA L 
Sbjct: 63  RLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLM 122

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV-------ARKVFDRMPDKS-V 172
            LNLG ++H ++   G D DL+   AL+N Y+K   +         A +V D M +++  
Sbjct: 123 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRS 182

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-----R 227
           V   S++ G    G     I  FN    + V+  S          AQ+ +ID       R
Sbjct: 183 VRTASVLVG--NQGRKVSDIEAFN----YDVSCRSREFE------AQVLEIDYKPRSEYR 230

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +    +GQ            I   +   +V   R+IF+MM E ++++W  +I+G   +G
Sbjct: 231 EMEACNLGQQ-----------IKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNG 279

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEH 346
              E + +   M    ++P++ T  +VL   A    + +G  +   S+RQ  GL   V  
Sbjct: 280 LYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQ--GLDAEVYV 337

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL-- 404
              ++D++ +   + ++Y+ V  ++ E+   + W +++  C  +  FD G++    +L  
Sbjct: 338 ASSLIDMYAKCTRVVDSYR-VFTLLTERDGIS-WNSIIAGCVQNGLFDEGLKFFRQMLMA 395

Query: 405 SVEPEN 410
            ++P++
Sbjct: 396 KIKPKS 401



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 8/155 (5%)

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            Y+  N +  + ++F+ +     +AW S+I  Y  +G   +++G F  M   G+ PD   
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNV 110

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK-------AR 262
              VL ACA L D++LG  +H +I+  GLD ++    +L+NMY++   + K       A 
Sbjct: 111 FPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGAS 170

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           ++ D M+E      TA +   G  G     +E F+
Sbjct: 171 QVLDEMTERTRSVRTASVL-VGNQGRKVSDIEAFN 204


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/586 (40%), Positives = 348/586 (59%), Gaps = 7/586 (1%)

Query: 1    MKNKQ--PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGF 55
            M+N++  P+     +IL A   L  L+    +H   + A      S  T L+S+    GF
Sbjct: 421  MQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGF 480

Query: 56   ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
             T A   F  + S D   +N+LI   ++     +++  + ++ +S I+P   T   V+ +
Sbjct: 481  FTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPA 540

Query: 116  CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVA 174
            CA L+ L+ G  +H  +   G++SD HV+ AL++ YAK  ++  A  +F++    K  V 
Sbjct: 541  CALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVT 600

Query: 175  WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
            WN +I+ Y QNG AKEAI  F+ MR    +P+S T V VL A A L     G   H  I+
Sbjct: 601  WNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACII 660

Query: 235  GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
              G   N ++  SLI+MYA+CG +  + ++F+ M   + ++W AM+SGY +HG+G  A+ 
Sbjct: 661  QMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIA 720

Query: 295  LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
            LF  M+   V+ ++V+FV+VLSAC HAGLV+EG ++F SM  +Y + P +EH+ CMVDL 
Sbjct: 721  LFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLL 780

Query: 355  GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            GRAGL +E   F+K V+  +P   VW A+LG+C+MH N  LG    +HL+ +EP NP H+
Sbjct: 781  GRAGLFDETLGFIK-VMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHF 839

Query: 415  VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIY 474
            V+LS+IYA +GR       R+ M   GLKK  G S VE+  K + F +GDKSHP    ++
Sbjct: 840  VVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMH 899

Query: 475  QYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIV 534
               + L+ +  + GYVP+    +  +EEE++E  L  HSE+LA+ F L+ T PG TI+IV
Sbjct: 900  LLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIV 959

Query: 535  KNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCH+  KFIS  T R IIVRD  RFHHF+ G CSC DYW
Sbjct: 960  KNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 180/331 (54%), Gaps = 11/331 (3%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSM--LTKLLSLV--CDAGFITYAQRIFFCI 66
           Y  +L +   L PL Q+HA +IV+G+    S+  L  L SL   CD      A+ +F   
Sbjct: 35  YPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCD-----LARSVFDST 89

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P+P   L+N++I   +++    ++L  Y  M+   + P  YTF+ V+K+C     L  G 
Sbjct: 90  PNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGV 149

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
             H  +   G + D+ + A LV+ Y+K  ++  AR+VFD+MP + VVAWN+MI+G  Q+ 
Sbjct: 150 WFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSE 209

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
              EA+  F  M+  GV P S + + +     +L +I+L R +H ++  +  D +  ++ 
Sbjct: 210 DPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR--DFSSAVSN 267

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
            LI++Y++CG+V  AR +FD M + + ++W  M++GY  +G   E +ELF +M+   VR 
Sbjct: 268 GLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRI 327

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           N V+ V+   A A    +++G  +     Q+
Sbjct: 328 NKVSAVSAFLAAAETIDLEKGKEIHGCALQQ 358



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 183/382 (47%), Gaps = 6/382 (1%)

Query: 9   PAYEAILKAGPRLKPLQQVHAHLIVAGY----GRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           P+  ++L   P +  L  +     + GY      S ++   L+ L    G +  A+R+F 
Sbjct: 228 PSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFD 287

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            +   D   + T++   +      + L  + +M + N+  +  +  +   + A    L  
Sbjct: 288 QMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEK 347

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G+ +H        DSD+ V   L+  YAK    + A+++F  +  + +VAW+++I+   Q
Sbjct: 348 GKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQ 407

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
            G+ +EA+ LF  M++  + P+  T + +L ACA L  + LG+ +H F V   +D ++  
Sbjct: 408 TGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLST 467

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
            T+L++MYA+CG  + A   F+ MS  +++ W ++I+GY   G    A+++F+++R   +
Sbjct: 468 GTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAI 527

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
            P+  T V V+ ACA    + +G  +   +  + G          ++D++ + G L  A 
Sbjct: 528 NPDAGTMVGVVPACALLNDLDQGTCIHG-LIVKLGFESDCHVKNALIDMYAKCGSLPSA- 585

Query: 365 KFVKDVIGEKPAPAVWTAMLGA 386
           +F+ +          W  ++ A
Sbjct: 586 EFLFNKTDFTKDEVTWNVIIAA 607



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 121/216 (56%), Gaps = 8/216 (3%)

Query: 101 NISPSNYT----FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           ++S S YT    +  ++ SC HL+ L     +H  + VSG+    H    L+N Y+  + 
Sbjct: 23  SLSSSTYTNYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHH-HSITHLINLYSLFHK 78

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
            D+AR VFD  P+ S + WNSMI  Y ++    EA+ ++  M + G+ PD  T   VL A
Sbjct: 79  CDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKA 138

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C    ++  G W H  I  +GL+ +V +   L++MY++ G++ +ARE+FD M + +V+AW
Sbjct: 139 CTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAW 198

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
            AMI+G        EAV+ F  M+  GV P++V+ +
Sbjct: 199 NAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLL 234


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/556 (39%), Positives = 343/556 (61%), Gaps = 7/556 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           ++VH H+   GY     ++  LL++      +  A+ +F  +P  +   + T+I   S  
Sbjct: 75  KRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSN- 133

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             +  +L     M    + P+ +T+S+V+++C  L  L   R +HC +  +G +SD+ V+
Sbjct: 134 KLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVR 190

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           +AL++ Y+K +++D A  VFD MP + +V WNS+I G+ QN    EA+ LF  M+  G  
Sbjct: 191 SALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFL 250

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            D  T   VL AC  L  ++LGR VH  ++    D +++L  +LI+MY +CG++  A   
Sbjct: 251 ADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSA 308

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  M E +VI+W+ M++G   +GY  +A+ELF  M+  G RPN +T + VL AC+HAGLV
Sbjct: 309 FSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLV 368

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           ++G   F SM++ +G+ PG EH+ C++DL GRAG L+EA K + ++  E P    W  +L
Sbjct: 369 EKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECE-PDSVTWRTLL 427

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GAC++H+N DL +  A+ ++ +EPE+ G Y++LSNIYA   R + V  VR  M  +G++K
Sbjct: 428 GACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRK 487

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S +EVD++ ++F +GD SHP   EI Q L++L+ R    GYVP++   + +LE E+
Sbjct: 488 TPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQ 547

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E SLRYHSEKLA+ FGLM  S   T+RI KNLR+C DCH   K +S   +R I++RD +
Sbjct: 548 KEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPI 607

Query: 565 RFHHFKRGSCSCLDYW 580
           R+HHF+ G CSC DYW
Sbjct: 608 RYHHFQDGVCSCGDYW 623



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 112/412 (27%), Positives = 193/412 (46%), Gaps = 53/412 (12%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T+S +IK C+    +  G+ VH H+F  GY+  + V   L+N Y K N ++ A  +FD M
Sbjct: 57  TYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEM 116

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
           P+++VV+W +MIS Y  N    +A+    LM   GV P+  T   VL AC  L ++   R
Sbjct: 117 PERNVVSWTTMISAY-SNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNL---R 172

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +H  I+  GL+ +V + ++LI++Y++  ++  A  +FD M   +++ W ++I G+  + 
Sbjct: 173 QLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNS 232

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEH 346
            G EA+ LF RM+  G   +  T  +VL AC    L++ G +V    ++ +  L+     
Sbjct: 233 DGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLIL---- 288

Query: 347 HVCMVDLFGRAGLLNEAYK-----FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           +  ++D++ + G L +A         KDVI        W+ M+     +      +E+ E
Sbjct: 289 NNALIDMYCKCGSLEDANSAFSRMVEKDVIS-------WSTMVAGLAQNGYSRQALELFE 341

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
             +      P +  +L  ++A +                    H G     V++  Y F 
Sbjct: 342 S-MKESGSRPNYITVLGVLFACS--------------------HAGL----VEKGWYYFR 376

Query: 462 MGDK---SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLR 510
              K     P   E Y  L +L+GR   AG + E+   +HE+E E    + R
Sbjct: 377 SMKKLFGVDPG-REHYGCLIDLLGR---AGRLDEAVKLIHEMECEPDSVTWR 424



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 153/285 (53%), Gaps = 6/285 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           +P+   Y ++L+A   L  L+Q+H  +I  G      + + L+ +      +  A  +F 
Sbjct: 152 RPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFD 211

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            +P+ D  ++N++I   ++ +   ++L  ++RM  +       T ++V+++C  L++L L
Sbjct: 212 EMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLEL 271

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           GR VH HV    +D DL +  AL++ Y K  +++ A   F RM +K V++W++M++G  Q
Sbjct: 272 GRQVHVHVL--KFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQ 329

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ--GLDVNV 242
           NG++++A+ LF  M++ G  P+  T + VL AC+  G ++ G W +   + +  G+D   
Sbjct: 330 NGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKG-WYYFRSMKKLFGVDPGR 388

Query: 243 VLATSLINMYARCGNVSKA-REIFDMMSELNVIAWTAMISGYGMH 286
                LI++  R G + +A + I +M  E + + W  ++    +H
Sbjct: 389 EHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVH 433



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 27/206 (13%)

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+   + M   GV  D+ T   ++  C+  G +  G+ VHE I  +G +  + +  +L+N
Sbjct: 39  AMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLN 98

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MY +   + +A ++FD M E NV++WT MIS Y  +    +A++    M   GVRPN  T
Sbjct: 99  MYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFT 157

Query: 311 FVAVLSACA--------HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           + +VL AC         H G+++ G      +R              ++D++ +   L+ 
Sbjct: 158 YSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRS------------ALIDVYSKWSDLDN 205

Query: 363 AYKFVKDVIGEKPAP--AVWTAMLGA 386
           A      V  E P     VW +++G 
Sbjct: 206 AL----GVFDEMPTRDLVVWNSIIGG 227


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/579 (40%), Positives = 354/579 (61%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKAGPR---LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P S  Y  +LKA  R   L+  ++     +  GYG    +   +L+L    G +  A R
Sbjct: 102 RPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMR 161

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   D   + T+I   ++   + +++  YR+M    +         +I++C  L  
Sbjct: 162 VFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGH 221

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
             +G ++H ++       D+ VQ +LV+ YAK+ ++++A  VF RM  K+V++W+++ISG
Sbjct: 222 SKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISG 281

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + QNGFA  A+ L   M+ FG  PDS + V VL AC+Q+G + LG+ VH +IV + L  +
Sbjct: 282 FAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR-LHFD 340

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            V +T++I+MY++CG++S AR +FD +S  + I+W A+I+ YG+HG G EA+ LF +MR 
Sbjct: 341 CVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRE 400

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             V+P++ TF ++LSA +H+GLV++G   F+ M  EY + P  +H+ CMVDL  RAG + 
Sbjct: 401 TNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVE 460

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA + ++ +I E P  A+W A+L  C  H  F +G   A+ +L + P++PG Y ++SN +
Sbjct: 461 EAQELIESMITE-PGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFF 519

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A A R D V  VR IM + G+KK  GYS +EV+ K + F M DKSH    EI Q L +L 
Sbjct: 520 ATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLD 579

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              +  GYVP++E  +H LEEE +E  L  HSE+LA+AFGL+ T PG  + I KNLR+C 
Sbjct: 580 YEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCG 639

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH A KFIS   NREI+VRD  RFHHFK G CSC DYW
Sbjct: 640 DCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 217/425 (51%), Gaps = 21/425 (4%)

Query: 8   SPAYEAILKAGPRLKPLQQVHAHLIVAG-YGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           S + + +L        + ++HA +I+ G +G   S   KL+      G I  A+++F   
Sbjct: 7   SKSLKTLLITSKDEPTIAKIHALMILTGIFGHGNSN-AKLIQSYARLGHIESARQVFDKS 65

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P      +N +II  S+     ++L  Y RM    + P + T++ V+K+C     L  G 
Sbjct: 66  PQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGE 125

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
                    GY  D+ V AA++N YAK   +D A +VFD+M  + +V W +MI+G  QNG
Sbjct: 126 ETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNG 185

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
            A+EA+ ++  M    V  D    + ++ AC  LG   +G  +H +++ + + ++V++ T
Sbjct: 186 QAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQT 245

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           SL++MYA+ G++  A  +F  M   NVI+W+A+ISG+  +G+   A++L   M++ G +P
Sbjct: 246 SLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKP 305

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC-----MVDLFGRAGLLN 361
           ++V+ V+VL AC+  G ++ G  V       +G +    H  C     ++D++ + G L+
Sbjct: 306 DSVSLVSVLLACSQVGFLKLGKSV-------HGYIVRRLHFDCVSSTAVIDMYSKCGSLS 358

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSN 419
            A + V D I  + + + W A++ +  +H +   G E     L +   N  P H    S 
Sbjct: 359 FA-RTVFDQISFRDSIS-WNAIIASYGIHGS---GEEALSLFLQMRETNVKPDHATFASL 413

Query: 420 IYALA 424
           + A +
Sbjct: 414 LSAFS 418


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/573 (38%), Positives = 354/573 (61%), Gaps = 5/573 (0%)

Query: 11  YEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y  +LK     K L Q   VH HLI + +     M   LL++    G +  A+++F  +P
Sbjct: 54  YNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMP 113

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             D   + TLI   S+ +   D+L+ + +M+    SP+ +T S+VIK+ A       G  
Sbjct: 114 ERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQ 173

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H      G+DS++HV +AL++ Y +   +D A+ VFD +  ++ V+WN++I+G+ +   
Sbjct: 174 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCG 233

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            ++A+ LF  M   G  P   +   +  AC+  G ++ G+WVH +++  G  +      +
Sbjct: 234 TEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 293

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L++MYA+ G++  AR+IFD +++ +V++W ++++ Y  HG+G EAV  F  MR  G+RPN
Sbjct: 294 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPN 353

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            ++F++VL+AC+H+GL+ EG   +  M+++ G++    H+V +VDL GRAG LN A +F+
Sbjct: 354 EISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNRALRFI 412

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           +++  E P  A+W A+L AC+MHKN +LG   AEH+  ++P++PG +V+L NIYA  GR 
Sbjct: 413 EEMPIE-PTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRW 471

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           +    VR  M + G+KK    S VE++   ++F   D+ HP   EI +  +E++ + +E 
Sbjct: 472 NDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKEL 531

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           GYVP++   +  ++++ERE +L+YHSEK+ALAF L+ T PG TI I KN+R+C DCHSAI
Sbjct: 532 GYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAI 591

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           K  S A  REIIVRD  RFHHFK G+CSC DYW
Sbjct: 592 KLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/589 (38%), Positives = 348/589 (59%), Gaps = 34/589 (5%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H  ++  G  R   +   L+ +  +   + YA+ +F  +   D   ++T+I   S+ 
Sbjct: 144 KEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRN 203

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV- 143
                +L   R M    + PS     +++   A  + + +G+A+H +V  +  +  + V 
Sbjct: 204 KEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVP 263

Query: 144 -QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG--------------------- 181
              AL++ YAK  ++ +AR++F+ +  K+VV+W +MI+G                     
Sbjct: 264 TTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRD 323

Query: 182 ----------YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
                     Y Q     +A  LF+ MR  GV P   T V +L+ CA  G +DLG+WVH 
Sbjct: 324 VMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHS 383

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
           +I  + ++V+ +L T+L++MYA+CG+++ A  +F      ++  W A+I+G+ MHGYG E
Sbjct: 384 YIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEE 443

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           A+++F  M   GV+PN++TF+ +L AC+HAGLV EG ++F  M   +GL+P +EH+ CMV
Sbjct: 444 ALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMV 503

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411
           DL GRAGLL+EA++ +K  +  KP   VW A++ AC++HKN  LG   A  LL +EPEN 
Sbjct: 504 DLLGRAGLLDEAHEMIKS-MPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENC 562

Query: 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTN 471
           G+ V++SNIYA A R      VR  M   G+KK  G+S +EV+   + F MGD+SHP   
Sbjct: 563 GYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIR 622

Query: 472 EIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTI 531
            I + L E+  +  EAGYVP++ + +  ++EEE+E +L YHSEKLA+AFGL+ T+P   I
Sbjct: 623 RINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPI 682

Query: 532 RIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           RIVKNLR+C DCH+A K +S    R IIVRDR RFHHF+ G CSC DYW
Sbjct: 683 RIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 172/356 (48%), Gaps = 37/356 (10%)

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
           SP S  +N +I   +K N   ++L  Y ++   +    N+   +V+K+C  +S   LG+ 
Sbjct: 87  SP-SAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKE 145

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H  V   G D D+ V  AL+  Y +   V+ AR VFD+M ++ VV+W++MI    +N  
Sbjct: 146 IHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKE 205

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD--VNVVLA 245
              A+ L   M    V P     V ++   A   ++ +G+ +H +++    +  + V   
Sbjct: 206 FDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTT 265

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG----------------------- 282
           T+L++MYA+CG++  AR++F+ +++  V++WTAMI+G                       
Sbjct: 266 TALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVM 325

Query: 283 --------YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
                   Y       +A  LF +MR  GVRP  VT V++LS CA AG +  G  V + +
Sbjct: 326 IWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYI 385

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            +E   +  +  +  +VD++ + G +N A +   + I       +W A++    MH
Sbjct: 386 DKERVEVDCIL-NTALVDMYAKCGDINAAGRLFIEAISRD--ICMWNAIITGFAMH 438


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/579 (39%), Positives = 356/579 (61%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKA--GPRLKPL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
            P+   +  +LKA  G  ++ + +Q+H      G+G +  +   L+S+    G I+YA+ 
Sbjct: 97  HPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARI 156

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +       + ++I    +     ++L  ++ M   N+ P      +V+ +  ++  
Sbjct: 157 VFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVED 216

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+++H  V   G + +  +  +L   YAK   V+VAR  F+RM   +++ WN+MISG
Sbjct: 217 LGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISG 276

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y  NG+ +EAI LF  M    +  DS T    + A AQ+G ++L RW+  +I       +
Sbjct: 277 YANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDD 336

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             + T LI+MYA+CG++  AR +FD +++ +V+ W+ MI GYG+HG+G EA+ L++ M+ 
Sbjct: 337 TFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQ 396

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV PN+ TF+ +L+AC ++GLV+EG  +F  M  ++G+ P  +H+ C+VDL GRAG LN
Sbjct: 397 AGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPHHQHYSCVVDLLGRAGYLN 455

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           +AY F+   +  KP  +VW A+L ACK+H+   LG   AE L  ++P N GHYV LSN+Y
Sbjct: 456 QAYDFIMS-MPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLY 514

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A A    RV  VR +M QKGL K +G+S++E++     F +GD+SHP + EI++ LD L 
Sbjct: 515 ASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLE 574

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            R + AGYVP  ES +H+L  EE E +L +HSE+LA+A+G++ T+PG T+RI KNLR C+
Sbjct: 575 KRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACI 634

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +CHSAIK IS   +REII+RD  RFHHFK G CSC D+W
Sbjct: 635 NCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 201/375 (53%), Gaps = 13/375 (3%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK L QV+  LIV+G  + R ++ K ++     G + YA + F  +  PD  L+N +I  
Sbjct: 15  LKHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKG 74

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            ++ N     +  Y  M +S + P+ +TF  V+K+C   S+  +G+ +H   F  G+ S+
Sbjct: 75  YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 134

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           + VQ +LV+ YAK   +  AR VFD++ D++VV+W S+ISGY QNG   EA+ +F  MR 
Sbjct: 135 VFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQ 194

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
             V PD    V V+ A   + D+  G+ +H  +   GL+    +  SL  MYA+ G V  
Sbjct: 195 CNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEV 254

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           AR  F+ M + N+I W AMISGY  +GYG EA++LF  M    +R +++T  + + A A 
Sbjct: 255 ARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQ 314

Query: 321 AGLVQ-----EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
            G ++     +G+   +  R +  +  G      ++D++ + G +  A + V D + +K 
Sbjct: 315 VGSLELARWLDGYISKSEYRDDTFVNTG------LIDMYAKCGSIYLA-RCVFDRVADKD 367

Query: 376 APAVWTAMLGACKMH 390
              +W+ M+    +H
Sbjct: 368 V-VLWSVMIMGYGLH 381


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/525 (40%), Positives = 340/525 (64%), Gaps = 9/525 (1%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           ++YA  +F  I +P+ F +NT+    ++++  + +L FYR+MIVS I P  +T+  ++K+
Sbjct: 80  LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKA 139

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
            +    +  G A+H     +G++S + VQ +L++ YA   + + A  VF+ M D+ +VA 
Sbjct: 140 ISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAX 199

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
            S+I+G+  NG   EA+ LF  M   GV PD  T V +L+A A+LG ++LGR VH +++ 
Sbjct: 200 ISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLK 259

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
            GL  N  +  SL+++YA+C  + +         E N ++WT++I G  ++G+G EA+EL
Sbjct: 260 VGLRENSHVTNSLLDLYAKCDAIWEX--------ERNAVSWTSLIVGLAVNGFGEEALEL 311

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355
           F  M   G+ P+ +TFV VL AC+H G++ EG   F  M++E+G++P +EH+ CMVDL  
Sbjct: 312 FREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLS 371

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415
           RAGL+ +AY+++++ +  +P    W  +LGAC +H +  LG     HLL +EP++ G YV
Sbjct: 372 RAGLVKQAYEYIQN-MPVQPNAVTWRTLLGACTIHGHLGLGETARSHLLKLEPKHSGDYV 430

Query: 416 MLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQ 475
           +LSN+Y    R   V+++R  M++ G+KK  GYS VE+  + Y F+MG++SHP + ++Y 
Sbjct: 431 LLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSHPQSQDVYA 490

Query: 476 YLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVK 535
            L+++    +  GYVP + + + ++EEEE+E +L YHSEK A+AF  + T+PG TIR++K
Sbjct: 491 LLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKXAIAFMRLNTAPGTTIRVMK 550

Query: 536 NLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           NLR+C DCH AIK ++   +REI++RDR RFHHF+ GSCSC DYW
Sbjct: 551 NLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/575 (40%), Positives = 343/575 (59%), Gaps = 3/575 (0%)

Query: 7   HSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           H+   ++ + +G  L+  +Q+H  L+V+G G    + TKL+ L    G + +A+R+F  +
Sbjct: 65  HTSILQSCVASG-SLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGM 123

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P  + FL+N LI   ++      ++  YR M+   + P N+T+  V+K+CA L  L  GR
Sbjct: 124 PKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGR 183

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            VH  V  + +  D+ V A +V+ YAK   VD AR VFD +  +  V WNSMI+ Y QNG
Sbjct: 184 EVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNG 243

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
              EA+ L   M   G+ P   T V  ++A A    +  GR +H F   +G  +   L T
Sbjct: 244 RPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKT 303

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VR 305
           SL++MYA+ G V  AR +F+ + +  +++W AMI GYGMHG+  EA+ LF++M+    V 
Sbjct: 304 SLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVT 363

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           P+N+TFV VLSAC H G+V+E    F  M   Y + P V+H+ C++D+ G  G   EAY 
Sbjct: 364 PDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYD 423

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
            +K +  E P   +W A+L  CK+HKN +LG    + L+ +EPE+ G+YV LSNIYA +G
Sbjct: 424 LIKGMSIE-PDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSG 482

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
           + ++   VR +M  +GLKK +  S +E+  K + F +GD SHP ++EIY  L+ L G   
Sbjct: 483 KWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGLMS 542

Query: 486 EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
           +AGYVP+     H ++++E+   +R HSE+LA+AFGL+ T PG  + + KNLR+C DCH 
Sbjct: 543 DAGYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHV 602

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            IK IS    REII+RD  R+HHF  G CSC DYW
Sbjct: 603 VIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/560 (42%), Positives = 338/560 (60%), Gaps = 40/560 (7%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCD-AGFITYAQRIFFCIPS--PDSFLFNTLIIR 80
           L+QVHA +I      S   LT++  LVC       YAQ+IF C+    P++F++N+ +  
Sbjct: 77  LRQVHAQIIKTNAPLSILPLTRV-GLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKA 135

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            ++ +   D+++ + R+   ++ P  +T S+V+++C +L  L+ GR +H  V   G+ S 
Sbjct: 136 LAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRS- 194

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
                                             W SMI+GY Q G AKEAI LF  M +
Sbjct: 195 ----------------------------------WTSMIAGYVQCGKAKEAIHLFAKMEE 220

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            GV  +  T V VLAACA LG +DLG  +HE+    G   NV ++ +LI+MY +CG + +
Sbjct: 221 AGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEE 280

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A ++F+ M E  V++W+AMI G  MHG   EA+ LF  M   G+ PN VTF+ +L AC+H
Sbjct: 281 ACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSH 340

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
            GL+ EG R FASM ++YG++P +EH+ CMVDL  RAGLL+EA++F+ + +  KP   VW
Sbjct: 341 MGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILN-MPMKPNGVVW 399

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
            A+LGAC++HKN ++  E  +HLL ++P N G+YV+LSNIYA AGR +    VR  M  +
Sbjct: 400 GALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDR 459

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
            +KK  G+S++ VD   + F  G++SHP+T +I+Q  +EL+   R  GYVP +   + ++
Sbjct: 460 QVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDI 519

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
           EE E+   +  HSEKLAL FGLM T     IRI+KNLR+C DCHSA K IS   NREI+V
Sbjct: 520 EEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVV 579

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RDR RFH F   SCSC DYW
Sbjct: 580 RDRNRFHCFNDNSCSCRDYW 599


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/522 (40%), Positives = 328/522 (62%), Gaps = 3/522 (0%)

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           ++IF  +P  D   +NT+I  N++     ++L   R M  +N+ P ++T S+V+   A  
Sbjct: 193 RKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAEN 252

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             ++ G+ +H      G D+D++V ++L++ YAK   V  + +VF  + ++  ++WNS+I
Sbjct: 253 VDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           +G  QNG   E +  F  M    + P S +   ++ ACA L  + LG+ +H +I   G D
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 372

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            N+ +A+SL++MYA+CGN+  A++IFD M   ++++WTAMI G  +HG   +A+ELF +M
Sbjct: 373 ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM 432

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
              G++PN+V F+AVL+AC+H GLV E  + F SM +++G+ PGVEH+  + DL GRAG 
Sbjct: 433 ETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGR 492

Query: 360 LNEAYKFVKDV-IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           L EAY F+  + IG  P  ++W  +L AC++H N D+  +VA  +L V+P N G Y++L+
Sbjct: 493 LEEAYDFICGMHIG--PTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLA 550

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           NIY+ A R       R  M + G++K    S +EV  K Y F  GD+SHP   +I + ++
Sbjct: 551 NIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAME 610

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
            L+    + GYVP++    H++EEE+++Y +  HSE+LA+ FG++ T  GMTIR+ KNLR
Sbjct: 611 VLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLR 670

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+A KFIS    REI+VRD  RFHHFK G+CSC DYW
Sbjct: 671 VCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 194/399 (48%), Gaps = 46/399 (11%)

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           R+F  I  P +  + ++I   +       SL  +  M+ S + P +  F +V+KSCA L 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN------------------------- 155
            LNLG ++H ++   G D DL+   AL+N Y+K                           
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 156 -------NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
                  + D  RK+F+ MP+K +V+WN++I+G  +NG  +E + +   M    + PDS 
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           T   VL   A+  DI  G+ +H   + QGLD ++ +A+SLI+MYA+C  V+ +  +F ++
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
           +E + I+W ++I+G   +G   E +  F +M    ++P + +F +++ ACAH   +  G 
Sbjct: 301 TERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGK 360

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEKPAPAVWTAM 383
           ++   + +  G    +     +VD++ + G +  A +      ++D++        WTAM
Sbjct: 361 QLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-------WTAM 412

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           +  C +H      +E+ E  +  E   P H   ++ + A
Sbjct: 413 IMGCALHGQAPDAIELFEQ-METEGIKPNHVAFMAVLTA 450



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 185/383 (48%), Gaps = 38/383 (9%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H   I  G      + + L+ +      +  + R+F  +   D   +N++I    + 
Sbjct: 259 KEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQN 318

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               + L F+R+M+++ I P +Y+FS+++ +CAHL+ L+LG+ +H ++  +G+D ++ + 
Sbjct: 319 GLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIA 378

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ++LV+ YAK  N+  A+++FDRM  + +V+W +MI G   +G A +AI LF  M   G+ 
Sbjct: 379 SSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK 438

Query: 205 PDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           P+    + VL AC+  G +D   ++ +      G+   V    ++ ++  R G + +A  
Sbjct: 439 PNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEA-- 496

Query: 264 IFDMMSELNV----IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV-TFVAVLSAC 318
            +D +  +++      W  ++S   +H     A ++ +R+    V PNN   ++ + +  
Sbjct: 497 -YDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILE--VDPNNTGAYILLANIY 553

Query: 319 AHAGLVQEGHRVFASMR-----------------QEYGLLPGVEHHVC----------MV 351
           + A   +E  +  ASMR                 + Y  + G E H C          +V
Sbjct: 554 SAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLV 613

Query: 352 DLFGRAGLLNEAYKFVKDVIGEK 374
           +L  + G + +  +   DV  E+
Sbjct: 614 ELMEKEGYVPDTSEVHHDVEEEQ 636



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 136/296 (45%), Gaps = 39/296 (13%)

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            Y+  N +  + ++F+ +     +AW S+I  Y  +G   +++G F  M   G+ PD   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR-------------CG 256
              VL +CA L D++LG  +H +I+  GLD ++    +L+NMY++              G
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 257 NV-------------------SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
            V                      R+IF+MM E ++++W  +I+G   +G   E + +  
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGR 356
            M    ++P++ T  +VL   A    +  G  +   S+RQ  GL   +     ++D++ +
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQ--GLDADIYVASSLIDMYAK 286

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SVEPEN 410
              + ++ + V  ++ E+   + W +++  C  +  FD G+     +L   ++P++
Sbjct: 287 CTRVADSCR-VFTLLTERDGIS-WNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKS 340


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/574 (41%), Positives = 344/574 (59%), Gaps = 5/574 (0%)

Query: 11  YEAILK---AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y ++L+   A   L   +Q+H  L+V+G G    + TKL+ L    G + +A+R+F  +P
Sbjct: 65  YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMP 124

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             + FL+N LI   ++      ++  YR M+   + P N+T+   +K+CA L  L  GR 
Sbjct: 125 KRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGRE 184

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           VH  V  + +  D+ V A LV+ YAK   VD AR VFDR+  +  V WNSMI+ Y QNG 
Sbjct: 185 VHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGR 244

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
             EA+ L   M   GV P   T V  ++A A    +  GR +H F   +G D    L TS
Sbjct: 245 PMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTS 304

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRP 306
           L++MYA+ G V  AR +F+ + +  +++W AMI GYGMHG+  EA++LF++MR    V P
Sbjct: 305 LVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTP 364

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           +N+TFV VLSAC H G+V+E    F  M   Y + P V+H  C+VD+ G AG   EAY  
Sbjct: 365 DNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDL 424

Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
           +K  +  +P   +W A+L  CK+HKN +LG    + L+ +EPE+ G+YV+LSNIYA +G+
Sbjct: 425 IKG-MPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGK 483

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE 486
            ++   VR +M  +GLKK +G S +E+  K + F +GD SHP + EIY+ L+ L G   +
Sbjct: 484 WEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSD 543

Query: 487 AGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSA 546
           AGY+P++    H++ ++E+   +R HSE+LA+AFGL+ T  G  + + KNLR+C DCH  
Sbjct: 544 AGYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVV 603

Query: 547 IKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           IK IS    REII+RD  R+HHF  G CSC DYW
Sbjct: 604 IKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 165/316 (52%), Gaps = 15/316 (4%)

Query: 103 SPSNYT-FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           SP++Y  +++V++SC     L  GR +H  + VSG   D  +   LV+ YA    V  AR
Sbjct: 58  SPNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHAR 117

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           ++FD MP ++V  WN +I  Y ++G  + AI L+  M D+GV PD+ T    L ACA L 
Sbjct: 118 RLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALL 177

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           D++ GR VHE ++G     ++ +   L++MYA+CG V  AR +FD +   + + W +MI+
Sbjct: 178 DLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIA 237

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
            YG +G   EA+ L   M A+GV P   T V+ +SA A A  +  G  +       +G  
Sbjct: 238 AYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHG-----FGWR 292

Query: 342 PGVEHH----VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
            G +        +VD++ ++G +  A    + ++  K     W AM+    MH +FD  +
Sbjct: 293 RGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLM--KRELVSWNAMICGYGMHGHFDEAL 350

Query: 398 EVAEHL---LSVEPEN 410
           ++   +     V P+N
Sbjct: 351 KLFNKMRVEAQVTPDN 366


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/537 (42%), Positives = 336/537 (62%), Gaps = 7/537 (1%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN-SKANFSTDSLLFYRRMIVSNI 102
           T L++     G+I  AQ++F  IP  D   +N +I       N+     LF   M+++N+
Sbjct: 159 TALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNV 218

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
            P   T   V+ +CA    + LGR VH  +   G+ S+L +  AL++ Y+K   V+ A +
Sbjct: 219 RPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACE 278

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           +FD + +K V++WN++I GY      KEA+ LF  M   G  P+  T + +L ACA LG 
Sbjct: 279 LFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 338

Query: 223 IDLGRWVHEFIVGQ--GLDVNVV-LATSLINMYARCGNVSKAREIFDM-MSELNVIAWTA 278
           ID+GRW+H +I  +  G+  NV  L TSLI+MYA+CG++  A+++FD  MS  ++  W A
Sbjct: 339 IDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNA 398

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           MISG+ MHG    A ++F RMR +G+ P+++TFV +LSAC+H+G++  G  +F SM + Y
Sbjct: 399 MISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGY 458

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
            + P +EH+ CM+DL G +GL  EA + + + +  +P   +W ++L ACK+H N +LG  
Sbjct: 459 EITPKLEHYGCMIDLLGHSGLFKEAEEMI-NTMPMEPDGVIWCSLLKACKIHGNLELGES 517

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV-GYSTVEVDQKN 457
            A+ L+ +EP N G YV+LSNIYA AGR + V  +R ++  KG+KK V G S++E+D   
Sbjct: 518 FAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVV 577

Query: 458 YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLA 517
           + F +GDK HP   EIY  L+E+     EAG+VP++   + E+EEE RE +LR+HSEKLA
Sbjct: 578 HEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLA 637

Query: 518 LAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSC 574
           +AFGL+ T PG  + I+KNLR+C +CH A K IS    REII RDR RF HF+ G C
Sbjct: 638 IAFGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 130/435 (29%), Positives = 219/435 (50%), Gaps = 42/435 (9%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDA----GFITYAQRIFFCIPSPDSFLFNTLII 79
           ++ +HA +I  G   +   L+KLL     +    GF  YA  +F  I  P+  ++NT+  
Sbjct: 4   VRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGF-PYAISVFDTIQEPNLLIWNTMFR 62

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
            ++ ++    +L  Y  MI   + P +YTF  ++KSCA   I   G+ +H HV   G+D 
Sbjct: 63  GHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDL 122

Query: 140 DLHVQAALVNFYAKSNNVDVARKV-------------------------------FDRMP 168
           D++V  +L++ YA++  ++ ARKV                               FD +P
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIP 182

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
            K VV+WN+MISGY + G  KEA+ LF  +M    V PD +T V V++ACAQ   I+LGR
Sbjct: 183 GKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR 242

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            VH +I   G   N+ +  +LI++Y++ G V  A E+FD +   +VI+W  +I GY    
Sbjct: 243 HVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMN 302

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY-GLLPGVEH 346
              EA+ LF  M   G  PN+VT +++L ACAH G +  G  +   + ++  G++  V  
Sbjct: 303 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSS 362

Query: 347 -HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL- 404
               ++D++ + G ++ A +     +  + + + W AM+    MH   +   ++   +  
Sbjct: 363 LQTSLIDMYAKCGDIDAAQQVFDSSMSNR-SLSTWNAMISGFAMHGRANAAFDIFSRMRM 421

Query: 405 -SVEPENPGHYVMLS 418
             +EP++     +LS
Sbjct: 422 NGIEPDDITFVGLLS 436



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 177/342 (51%), Gaps = 12/342 (3%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           M N +P       ++ A  +   ++    VH+ +   G+  +  ++  L+ L    G + 
Sbjct: 215 MTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVE 274

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A  +F  + + D   +NTLI   +  N   ++LL ++ M+ S  +P++ T  +++ +CA
Sbjct: 275 TACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 334

Query: 118 HLSILNLGRAVHCHV--FVSGYDSDL-HVQAALVNFYAKSNNVDVARKVFD-RMPDKSVV 173
           HL  +++GR +H ++   + G  +++  +Q +L++ YAK  ++D A++VFD  M ++S+ 
Sbjct: 335 HLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLS 394

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
            WN+MISG+  +G A  A  +F+ MR  G+ PD  T V +L+AC+  G +DLGR +   +
Sbjct: 395 TWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSM 454

Query: 234 VGQGLDVNVVLA--TSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGT 290
             +G ++   L     +I++    G   +A E+ + M  E + + W +++    +HG   
Sbjct: 455 T-RGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHG-NL 512

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           E  E F +        N+ ++V + +  A AG   E  ++ A
Sbjct: 513 ELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRA 554



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 167/360 (46%), Gaps = 52/360 (14%)

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD---VARKVFDRMPDKSVVAWNSMISGY 182
           R +H  +  +G  +  +  + L+ F   S + D    A  VFD + + +++ WN+M  G+
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGH 64

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
             +     A+ L+ +M   G+ PDS T   +L +CA+      G+ +H  ++  G D+++
Sbjct: 65  ALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDI 124

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY-------------- 288
            + TSLI+MYA+ G +  AR++FD+ S  +V+++TA+I+GY   GY              
Sbjct: 125 YVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGK 184

Query: 289 -----------------GTEAVELFHR-MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
                              EA+ELF   M    VRP+  T V V+SACA +  ++ G  V
Sbjct: 185 DVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHV 244

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAVWTAMLG 385
             S   ++G    ++    ++DL+ + G +  A +       KDVI        W  ++G
Sbjct: 245 H-SWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVIS-------WNTLIG 296

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR--NIMIQKGLK 443
                  +   + + + +L    E P    MLS + A A  +  +++ R  ++ I K LK
Sbjct: 297 GYTHMNLYKEALLLFQEMLR-SGETPNDVTMLSILPACA-HLGAIDIGRWIHVYINKKLK 354


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/579 (40%), Positives = 349/579 (60%), Gaps = 4/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
            P S  +  +LKA  R+   +   ++H+ ++ AG      +   L++L    GFI  A +
Sbjct: 105 SPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFK 164

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  IP  +   +   I          +++  +RR++   + P +++   V+ +C     
Sbjct: 165 VFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGD 224

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G  +  ++  +G   ++ V  ALV+FY K  N++ AR VFD M +K++V+W+SMI G
Sbjct: 225 LRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQG 284

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y  NG  KEA+ LF  M + G+ PD    V VL +CA+LG ++LG W    I G     N
Sbjct: 285 YASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDN 344

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            VL T+LI+MYA+CG + +A E+F  M + + + W A ISG  M G+  +A+ LF +M  
Sbjct: 345 SVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEK 404

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G++P+  TFV +L AC HAGLV+EG R F SM   + L P +EH+ CMVDL GRAG L+
Sbjct: 405 SGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLD 464

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA++ +K +  E  A  VW A+LG C++H++  L   V + L+++EP + G+YV+LSNIY
Sbjct: 465 EAHQLIKSMPMEANA-IVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIY 523

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A + + +    +R+IM ++G+KK  GYS +EVD   + F +GD SHP + +IY  L EL 
Sbjct: 524 AASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELA 583

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              + AGYVP ++  + ++EEEE+E+ +  HSEKLA+AFGL+ T+P   I +VKNLR+C 
Sbjct: 584 KDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCG 643

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH AIK IS    REIIVRD  RFH F  G CSC DYW
Sbjct: 644 DCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 203/369 (55%), Gaps = 3/369 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK L+ +HA L+  G      +L K+L    + G   Y+ RI      P+ FLFNT+I  
Sbjct: 23  LKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRG 82

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
               +   +S+  Y  M    +SP ++TF  V+K+CA +    LG  +H  V  +G ++D
Sbjct: 83  LVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEAD 142

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
             V+ +L+N Y K   +D A KVFD +PDK+  +W + ISGY   G  +EAI +F  + +
Sbjct: 143 AFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLE 202

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G+ PDS + V VL+AC + GD+  G W+ E+I   G+  NV +AT+L++ Y +CGN+ +
Sbjct: 203 MGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMER 262

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           AR +FD M E N+++W++MI GY  +G   EA++LF +M   G++P+    V VL +CA 
Sbjct: 263 ARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCAR 322

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
            G ++ G    +++      L        ++D++ + G ++ A++  + +   K    VW
Sbjct: 323 LGALELGDWA-SNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGM--RKKDRVVW 379

Query: 381 TAMLGACKM 389
            A +    M
Sbjct: 380 NAAISGLAM 388


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/581 (40%), Positives = 345/581 (59%), Gaps = 12/581 (2%)

Query: 5   QPHSPAYEAILKAGPRLK-PL--QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
            P + ++  ILK+   L  P+  QQ+H H+I  G      +LT L+S+ C  G +  A++
Sbjct: 47  SPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARK 106

Query: 62  IFFCIP--SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           +F   P  S     +N LI   +  +  +D+   +RRM  + +S  + T   ++  C   
Sbjct: 107 VFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVP 166

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             L LGR++H      G  S++ V  + +  Y K  +V+  R++FD MP K ++ WN++I
Sbjct: 167 EYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVI 226

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           SGY QNG A + + LF  M+  GV PD  T V VL++CA LG   +G+ V E +   G  
Sbjct: 227 SGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFA 286

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            NV L+ +LI+MYARCGN++KAR +FD+M   ++++WTAMI  YGMHG G   + LF  M
Sbjct: 287 PNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDM 346

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
              G+RP+   FV VLSAC+H+GL  +G  +F +M++EY L PG EH+ C+VDL GRAG 
Sbjct: 347 IKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGR 406

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L+EA +F+ D +  +P  AVW A+LGACK+HKN D+       ++  EP N G+YV++SN
Sbjct: 407 LDEAMEFI-DSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSN 465

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           IY+ +   + +  +R +M ++  +K  GYS VE   K +LF  GD+SH  T E+++ LDE
Sbjct: 466 IYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDE 525

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           L         V E    M     EE   + R HSE+LA+AFG++ + PG  I ++KNLR+
Sbjct: 526 L------ETSVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRV 579

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCH  IK +S   +R  +VRD  RFH+FK G CSC DYW
Sbjct: 580 CEDCHVFIKLVSKIVDRRFVVRDASRFHYFKDGVCSCKDYW 620



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 189/346 (54%), Gaps = 8/346 (2%)

Query: 88  TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL 147
           T+S+  YR M+ S  SP  ++F  ++KSCA LS+   G+ +HCHV   G +++  V  AL
Sbjct: 32  TESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTAL 91

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSV--VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           ++ Y K   V+ ARKVF+  P  S   V +N++ISGY  N    +A  +F  M++ GV+ 
Sbjct: 92  ISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSV 151

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           DS T + ++  C     + LGR +H   V  G    V +  S I MY +CG+V   R +F
Sbjct: 152 DSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLF 211

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D M    +I W A+ISGY  +G   + +ELF +M++ GV P+  T V+VLS+CAH G  +
Sbjct: 212 DEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKK 271

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            G  V   + +  G  P V     ++ ++ R G L +A + V D++  K   + WTAM+G
Sbjct: 272 IGQEV-GELVEANGFAPNVFLSNALISMYARCGNLAKA-RAVFDIMPVKSLVS-WTAMIG 328

Query: 386 ACKMHKNFDLGVEVAEHLL--SVEPENPGHYVMLSNIYALAGRMDR 429
              MH   + G+ + + ++   + P+    +VM+ +  + +G  D+
Sbjct: 329 CYGMHGMGETGLTLFDDMIKRGIRPDG-AVFVMVLSACSHSGLTDK 373



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 133/323 (41%), Gaps = 53/323 (16%)

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F R    +  +WN  +          E+I L+  M   G +PD+ +   +L +CA L   
Sbjct: 7   FVRNSAVASTSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLP 66

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM---MSELNVIAWTAMI 280
             G+ +H  ++  G +    + T+LI+MY +CG V  AR++F+     S+L V  + A+I
Sbjct: 67  VSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGV-CYNALI 125

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA--------------------- 319
           SGY  +   ++A  +F RM+  GV  ++VT + ++  C                      
Sbjct: 126 SGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTY 185

Query: 320 --------------HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
                           G V+ G R+F  M      + G+     ++  + + GL  +  +
Sbjct: 186 SEVAVLNSFITMYMKCGSVESGRRLFDEMP-----VKGLITWNAVISGYSQNGLAYDVLE 240

Query: 366 FVKDV--IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN---- 419
             + +   G  P P    ++L +C       +G EV E    VE       V LSN    
Sbjct: 241 LFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGEL---VEANGFAPNVFLSNALIS 297

Query: 420 IYALAGRMDRVEVVRNIMIQKGL 442
           +YA  G + +   V +IM  K L
Sbjct: 298 MYARCGNLAKARAVFDIMPVKSL 320


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/602 (38%), Positives = 356/602 (59%), Gaps = 35/602 (5%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF-CIPSPDS 71
           + L+  P    L+Q+HA ++ +G  +    +TK LS    + F +YA  +FF     PD+
Sbjct: 16  SCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDT 75

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           FL+N +I   S ++    SLL Y RM+  +   + YTF  ++K+C++LS       +H H
Sbjct: 76  FLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAH 135

Query: 132 VFVSGYDSDLHVQAALVNFYA-------------------------------KSNNVDVA 160
           +   GY  D++   +L+N YA                               K+  +D+A
Sbjct: 136 ITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMA 195

Query: 161 RKVFDRMPDKS-VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
             +F +MP+K+  ++W +MISGY Q G  KEA+ LF+ M++  V PD+ +    L+AC+Q
Sbjct: 196 LTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQ 255

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           LG ++ G+W+H +       ++ VL   LI+MYA+CG + +A  +F  M   +V  WTA+
Sbjct: 256 LGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTAL 315

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           ISGY  HG G EA+  F  M+  GV+PN +TF AVL+AC++ GLV+EG  VF ++ ++Y 
Sbjct: 316 ISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYN 375

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           L P +EH+ CMVDL GRAGLLNEA +F++  +  KP   +W ++L AC++HKN +LG ++
Sbjct: 376 LKPTIEHYGCMVDLLGRAGLLNEANRFIQK-MPLKPNAVIWGSLLKACQIHKNIELGEKI 434

Query: 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYL 459
            E L+ ++  + G YV ++NI+A+  + D+    R +M ++G+ K  G S + ++   + 
Sbjct: 435 GEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHE 494

Query: 460 FSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL-EEEEREYSLRYHSEKLAL 518
           F  GD+SH    EI      +  +  E GYVPE E  + +L ++EE+E  +  HSEKLA+
Sbjct: 495 FLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAI 554

Query: 519 AFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLD 578
            +GLM+T PG TIRI+KNLR+C DCH  +  IS    R+I++RDR RFHHFK G CSC D
Sbjct: 555 TYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGD 614

Query: 579 YW 580
           YW
Sbjct: 615 YW 616


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/586 (40%), Positives = 347/586 (59%), Gaps = 7/586 (1%)

Query: 1    MKNKQ--PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGF 55
            M+N++  P+     +IL A   L  L+    +H   + A      S  T L+S+    GF
Sbjct: 421  MQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGF 480

Query: 56   ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
             T A   F  + S D   +N+LI   ++     +++  + ++ +S I+P   T   V+ +
Sbjct: 481  FTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPA 540

Query: 116  CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVA 174
            CA L+ L+ G  +H  +   G++SD HV+ AL++ YAK  ++  A  +F++    K  V 
Sbjct: 541  CALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVT 600

Query: 175  WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
            WN +I+ Y QNG AKEAI  F+ MR    +P+S T V VL A A L     G   H  I+
Sbjct: 601  WNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACII 660

Query: 235  GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
              G   N ++  SLI+MYA+CG +  + ++F+ M   + ++W AM+SGY +HG+G  A+ 
Sbjct: 661  QMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIA 720

Query: 295  LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
            LF  M+   V+ ++V+FV+VLSAC H GLV+EG ++F SM  +Y + P +EH+ CMVDL 
Sbjct: 721  LFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLL 780

Query: 355  GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            GRAGL +E   F+K V+  +P   VW A+LG+C+MH N  LG    +HL+ +EP NP H+
Sbjct: 781  GRAGLFDETLGFIK-VMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHF 839

Query: 415  VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIY 474
            V+LS+IYA +GR       R+ M   GLKK  G S VE+  K + F +GDKSHP    ++
Sbjct: 840  VVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMH 899

Query: 475  QYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIV 534
               + L+ +  + GYVP+    +  +EEE++E  L  HSE+LA+ F L+ T PG TI+IV
Sbjct: 900  LLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIV 959

Query: 535  KNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCH+  KFIS  T R IIVRD  RFHHF+ G CSC DYW
Sbjct: 960  KNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 180/331 (54%), Gaps = 11/331 (3%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSM--LTKLLSLV--CDAGFITYAQRIFFCI 66
           Y  +L +   L PL Q+HA +IV+G+    S+  L  L SL   CD      A+ +F   
Sbjct: 35  YPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCD-----LARSVFDST 89

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P+P   L+N++I   +++    ++L  Y  M+   + P  YTF+ V+K+C     L  G 
Sbjct: 90  PNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGV 149

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
             H  +   G + D+ + A LV+ Y+K  ++  AR+VFD+MP + VVAWN+MI+G  Q+ 
Sbjct: 150 WFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSE 209

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
              EA+  F  M+  GV P S + + +     +L +I+L R +H ++  +  D +  ++ 
Sbjct: 210 DPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR--DFSSAVSN 267

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
            LI++Y++CG+V  AR +FD M + + ++W  M++GY  +G   E +ELF +M+   VR 
Sbjct: 268 GLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRI 327

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           N V+ V+   A A    +++G  +     Q+
Sbjct: 328 NKVSAVSAFLAAAETIDLEKGKEIHGCALQQ 358



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 183/382 (47%), Gaps = 6/382 (1%)

Query: 9   PAYEAILKAGPRLKPLQQVHAHLIVAGY----GRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           P+  ++L   P +  L  +     + GY      S ++   L+ L    G +  A+R+F 
Sbjct: 228 PSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFD 287

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            +   D   + T++   +      + L  + +M + N+  +  +  +   + A    L  
Sbjct: 288 QMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEK 347

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G+ +H        DSD+ V   L+  YAK    + A+++F  +  + +VAW+++I+   Q
Sbjct: 348 GKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQ 407

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
            G+ +EA+ LF  M++  + P+  T + +L ACA L  + LG+ +H F V   +D ++  
Sbjct: 408 TGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLST 467

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
            T+L++MYA+CG  + A   F+ MS  +++ W ++I+GY   G    A+++F+++R   +
Sbjct: 468 GTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAI 527

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
            P+  T V V+ ACA    + +G  +   +  + G          ++D++ + G L  A 
Sbjct: 528 NPDAGTMVGVVPACALLNDLDQGTCIHG-LIVKLGFESDCHVKNALIDMYAKCGSLPSA- 585

Query: 365 KFVKDVIGEKPAPAVWTAMLGA 386
           +F+ +          W  ++ A
Sbjct: 586 EFLFNKTDFTKDEVTWNVIIAA 607



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 121/216 (56%), Gaps = 8/216 (3%)

Query: 101 NISPSNYT----FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           ++S S YT    +  ++ SC HL+ L     +H  + VSG+    H    L+N Y+  + 
Sbjct: 23  SLSSSTYTNYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHH-HSITHLINLYSLFHK 78

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
            D+AR VFD  P+ S + WNSMI  Y ++    EA+ ++  M + G+ PD  T   VL A
Sbjct: 79  CDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKA 138

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C    ++  G W H  I  +GL+ +V +   L++MY++ G++ +ARE+FD M + +V+AW
Sbjct: 139 CTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAW 198

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
            AMI+G        EAV+ F  M+  GV P++V+ +
Sbjct: 199 NAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLL 234


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/607 (37%), Positives = 367/607 (60%), Gaps = 40/607 (6%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCD-------AGFITYAQRIFFC 65
           A+L++      L+ +H  L+         + ++LL+L  D          + YA  IF  
Sbjct: 17  ALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQ 76

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           I +P+ F+FN LI   S     + +  FY +M+ S I P N TF  +IK+ + +  + +G
Sbjct: 77  IQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVG 136

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYA-------------------------------KS 154
              H  +   G+ +D++V+ +LV+ YA                               K 
Sbjct: 137 EQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKC 196

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
             V+ AR++FD MP +++  W+ MI+GY +N   ++AI LF  M+  GV  + T  V V+
Sbjct: 197 GMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVI 256

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
           ++CA LG ++ G   +E++V   + VN++L T+L++M+ RCG++ KA  +F+ + E + +
Sbjct: 257 SSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSL 316

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
           +W+++I G  +HG+  +A+  F +M + G  P +VTF AVLSAC+H GLV++G  ++ +M
Sbjct: 317 SWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENM 376

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
           ++++G+ P +EH+ C+VD+ GRAG L EA  F+   +  KP   +  A+LGACK++KN +
Sbjct: 377 KKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILK-MHVKPNAPILGALLGACKIYKNTE 435

Query: 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           +   V   L+ V+PE+ G+YV+LSNIYA AG+ D++E +R++M +K +KK  G+S +E+D
Sbjct: 436 VAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEID 495

Query: 455 QKNYLFSMG-DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHS 513
            K   F+MG D+ HP   +I +  +E++G+ R  GY   +  A  +++EEE+E S+  HS
Sbjct: 496 GKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHS 555

Query: 514 EKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGS 573
           EKLA+A+G+M+T PG TIRIVKNLR+C DCH+  K IS    RE+IVRDR RFHHF+ G 
Sbjct: 556 EKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGV 615

Query: 574 CSCLDYW 580
           CSC DYW
Sbjct: 616 CSCRDYW 622



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 177/414 (42%), Gaps = 89/414 (21%)

Query: 99  VSNISPSNYTFS----AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV------ 148
           +SNI  +   F     A+++SC+  S L +   +H  +  +   SD+ V + L+      
Sbjct: 1   MSNIVLNTLRFKHPKLALLQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLALCVDD 57

Query: 149 -NFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
             F   +N +  A  +F ++ + ++  +N +I  +       +A G +  M    + PD+
Sbjct: 58  STFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDN 117

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
            T   ++ A +++  + +G   H  IV  G   +V +  SL++MYA CG ++ A  IF  
Sbjct: 118 ITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQ 177

Query: 268 MSELNVIAWTAMISGY---GM-----------------------HGYGT-----EAVELF 296
           M   +V++WT+M++GY   GM                       +GY       +A++LF
Sbjct: 178 MGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 237

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY---GLLPGVEHHVCMVDL 353
             M+  GV  N    V+V+S+CAH G ++ G R +  + + +    L+ G      +VD+
Sbjct: 238 EFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILG----TALVDM 293

Query: 354 FGRAGLLNEAYKFVKDV---------------------------------IGEKPAPAVW 380
           F R G + +A    + +                                 +G  P    +
Sbjct: 294 FWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTF 353

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLS---VEPENPGHYVMLSNIYALAGRMDRVE 431
           TA+L AC      + G+E+ E++     +EP    HY  + ++   AG++   E
Sbjct: 354 TAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLE-HYGCIVDMLGRAGKLAEAE 406


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/572 (38%), Positives = 347/572 (60%), Gaps = 19/572 (3%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           ++A +I   + +   ++ +LL +  +   I YA +IF    +P+ +L+  LI     + +
Sbjct: 51  IYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCY 110

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
            TD +  Y +MI S++ P +Y  ++V+K+C     L  GR VH  V   G  S+  ++  
Sbjct: 111 YTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIK 170

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVA------------------WNSMISGYEQNGFA 188
           L+  Y K    + AR+VFD MP++ VVA                  W +MI G  +NG +
Sbjct: 171 LIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGES 230

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
             A+ +F  M+   V P+  T VCVL+AC++LG + LGRWV  ++    +++N  +  +L
Sbjct: 231 NRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGAL 290

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           INMY+RCG++ +A+ +F+ M E NVI + +MI G+ +HG   EAVELF  +   G  P++
Sbjct: 291 INMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSS 350

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           VTFV VL+AC+H GL + G  +F SM ++YG+ P +EH+ CMVDL GR G L EAY F++
Sbjct: 351 VTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIR 410

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
            ++   P   +  A+L ACK+H N +L   VA+ L++ +  + G Y++LSN Y+ +G+  
Sbjct: 411 -MMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWK 469

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
               VR  M ++G++K  G S++EV+ + + F +GD  HP   +IY+ L+EL    R  G
Sbjct: 470 EAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEG 529

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           Y P +E  +H++E+ E+E++L  HSE+LA+ +GL+ T P  T+R+VKNLR+C DCH  IK
Sbjct: 530 YTPATEVVLHDIEKSEKEWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIK 589

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            IS  T R+I+VRDR RFHHF+ G CSC DYW
Sbjct: 590 LISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 172/361 (47%), Gaps = 36/361 (9%)

Query: 6   PHSPAYEAILKAGP---RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P S A  ++LKA      LK  ++VH+ ++  G   +RS+  KL+ L    G    A+R+
Sbjct: 128 PDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRV 187

Query: 63  FFCIPSPDSFLFNTLI---------------------IRNSKANFSTDSLLFYRRMIVSN 101
           F  +P  D      +I                     +RN ++N    +L  +R M   +
Sbjct: 188 FDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESN---RALEVFRNMQRED 244

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           + P+  T   V+ +C+ L  L LGR V  ++     + +  V  AL+N Y++  ++D A+
Sbjct: 245 VMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQ 304

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           +VF++M +K+V+ +NSMI G+  +G + EA+ LF  +   G  P S T V VL AC+  G
Sbjct: 305 RVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGG 364

Query: 222 DIDLGRWV-HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAM 279
             +LG  + H      G++  +     ++++  R G + +A     MM    + +   A+
Sbjct: 365 LAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGAL 424

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNV---TFVAVLSACAHAGLVQEGHRVFASMRQ 336
           +S   +HG     +EL  R+    V   N    T++ + +A + +G  +E   V  +MR+
Sbjct: 425 LSACKIHG----NLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMRE 480

Query: 337 E 337
           E
Sbjct: 481 E 481


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/436 (47%), Positives = 295/436 (67%), Gaps = 1/436 (0%)

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            A++  YAK   +D AR +FD + ++  + WN MI GY Q+G   E + LF  M +  V 
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T + VL+AC Q G ++ GRWVH +I   G+ +NV + TSLI+MY++CG++  AR +
Sbjct: 70  PNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLV 129

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ +S  +V+AW +M+ GY MHG+  +A+ LF  M   G +P ++TF+ VL+AC+HAGLV
Sbjct: 130 FERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLV 189

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG + F SM+ EYG+ P VEH+ CMV+L GRAG L EAY+ VK++  ++  P +W  +L
Sbjct: 190 SEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD-PVLWGTLL 248

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GAC++H N  LG ++AE+L+S    N G YV+LSNIYA AG  + V  VR +M + G +K
Sbjct: 249 GACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEK 308

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S++EV+ K + F  GD  HP + EIY+ L+E+ G  +  GY P+++  +H+LE+ +
Sbjct: 309 EPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQ 368

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E SL  HSEKLALAFGL+ T PG TI+IVKNLR+C DCH+  K IS  T R++++RDR 
Sbjct: 369 KERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDRN 428

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF  G CSC DYW
Sbjct: 429 RFHHFVNGLCSCGDYW 444



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 153/301 (50%), Gaps = 3/301 (0%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           +S   LT +++     G I  A+ +F  +   D+  +N +I   ++     + LL +R+M
Sbjct: 4   KSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQM 63

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
           + + + P+  T  AV+ +C     L  GR VH ++  +G   ++ V  +L++ Y+K  ++
Sbjct: 64  LNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSL 123

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
           + AR VF+R+ +K VVAWNSM+ GY  +GF+++A+ LF  M   G  P   T + VL AC
Sbjct: 124 EDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNAC 183

Query: 218 AQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIA 275
           +  G +  G ++ +      G++  V     ++N+  R G + +A E+   M  + + + 
Sbjct: 184 SHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVL 243

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           W  ++    +HG      ++   + +  +  N+ T+V + +  A AG  +   RV   M+
Sbjct: 244 WGTLLGACRLHGNIALGEQIAEYLVSQNL-ANSGTYVLLSNIYAAAGNWEGVARVRTLMK 302

Query: 336 Q 336
           +
Sbjct: 303 E 303



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 116/269 (43%), Gaps = 37/269 (13%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+     A+L A  +   L+    VH+++   G G +  + T L+ +    G +  A+ 
Sbjct: 69  RPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARL 128

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  I + D   +N++++  +   FS D+L  ++ M +    P++ TF  V+ +C+H  +
Sbjct: 129 VFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGL 188

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           ++ G                        FY+  +   +  KV           +  M++ 
Sbjct: 189 VSEGWKF---------------------FYSMKDEYGIEPKVEH---------YGCMVNL 218

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             + G+ +EA   + L+++  ++ D      +L AC   G+I LG  + E++V Q L  N
Sbjct: 219 LGRAGYLEEA---YELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAEYLVSQNL-AN 274

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSE 270
                 L N+YA  GN      +  +M E
Sbjct: 275 SGTYVLLSNIYAAAGNWEGVARVRTLMKE 303


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/581 (39%), Positives = 347/581 (59%), Gaps = 5/581 (0%)

Query: 3   NKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           + +P S  +   L A  RL  L   + V      AGYGR   + + LL +    G +  A
Sbjct: 106 SARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDA 165

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
            R+F  +P  D   ++T++     A    ++L  Y RM    ++        VI++C   
Sbjct: 166 IRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLT 225

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
               +G +VH      G   D+ +  +LV+ YAK+ + DVAR+VF  MP ++ V+WN++I
Sbjct: 226 GNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALI 285

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           SG+ QNG A EA+ LF  M   G+ PDS   V  L ACA +G + LG+ +H FI+ + L+
Sbjct: 286 SGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRR-LE 344

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
              +L T++++MY++CG++  AR++F+ +S  +++ W AMI+  G HG G +A+ LF  +
Sbjct: 345 FQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQEL 404

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
              G++P++ TF ++LSA +H+GLV+EG   F  M  E+G+ P  +H VC+VDL  R+GL
Sbjct: 405 NETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGL 464

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           + EA + +  +  E   P +W A+L  C  +K  +LG  +A+ +L  +PE+ G   ++SN
Sbjct: 465 VEEANEMLASMHTEPTIP-IWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSN 523

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           +YA A + D+V  +R +M   G KK  GYS +EV    + F M D+SHP   EI + + +
Sbjct: 524 LYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISK 583

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           L    R+ GYVP +E   H+L+E+ +E  L YHSE+LA+AFGL+ TSPG  + I+KNLR+
Sbjct: 584 LSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRV 643

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCH AIK+IS   +REI+VRD  RFHHFK G+CSC DYW
Sbjct: 644 CGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 198/371 (53%), Gaps = 14/371 (3%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL--FNTLIIRN 81
           L ++HA L+V+    S+++   L +     G +  A+      PS  S +  +N L+   
Sbjct: 31  LTRLHALLVVSS---SQNLFPSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAAR 87

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           S+A     +L  +R  + S+  P + TF+  + +CA L  L+   AV    F +GY  D+
Sbjct: 88  SRAGSPGAALRVFR-ALPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDV 146

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V +AL++ Y++   +  A +VFD MP K  VAW++M++G+   G   EA+G+++ MR+ 
Sbjct: 147 FVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREH 206

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           GV  D    V V+ AC   G+  +G  VH   +  G+ ++VV+ATSL++MYA+ G+   A
Sbjct: 207 GVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVA 266

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           R++F MM   N ++W A+ISG+  +G+  EA++LF  M   G++P++   V+ L ACA  
Sbjct: 267 RQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADV 326

Query: 322 GLVQEGHRV--FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           G ++ G  +  F   R E+  + G      ++D++ + G L  A K    +        +
Sbjct: 327 GFLKLGKSIHGFILRRLEFQCILG----TAVLDMYSKCGSLESARKLFNKLSSRD--LVL 380

Query: 380 WTAMLGACKMH 390
           W AM+  C  H
Sbjct: 381 WNAMIACCGTH 391


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/569 (39%), Positives = 353/569 (62%), Gaps = 20/569 (3%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPDS 71
           +L+    ++ L+Q+H  ++  G        +KLL+     ++G + YA+ +F  I  P++
Sbjct: 24  LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNT 83

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           F++NT+I   S +    ++LL Y  M+  ++  + YTF  ++K+C+ +S L   + +H H
Sbjct: 84  FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAH 143

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           +   G+ S+++   +L+N Y+KS ++  AR +FD++  +                   EA
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT-----------------EA 186

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           + LF+ M+  G+  D+   V  L ACA LG +D G+W+H +I    ++++ +L   LI+M
Sbjct: 187 LNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDM 246

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           YA+CG++ +A E+F  M E  V  WTAMISGY +HG G EA+E F +M+  GV PN +TF
Sbjct: 247 YAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTF 306

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
             +L+AC+HAGLV E   +F SM + +G  P +EH+ CMVDL GRAGLL EA + +++ +
Sbjct: 307 TGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIEN-M 365

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
             KP  A+W A+L AC +H N +LG ++ + L+ V+P + G Y+ L++I+A AG  ++  
Sbjct: 366 PVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAA 425

Query: 432 VVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVP 491
            VR  M ++G+ K  G S + V+   + F  GD+SHP   EI   L++++ R RE GY P
Sbjct: 426 RVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKP 485

Query: 492 ESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFIS 551
           +    + +LE++E+E ++ +HSEKLA+ FGL+ T PGMTIRIVKNLR+C DCH+ IK IS
Sbjct: 486 KLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLIS 545

Query: 552 VATNREIIVRDRLRFHHFKRGSCSCLDYW 580
               REI++RDR RFH FK G+C+C DYW
Sbjct: 546 KVYAREILMRDRTRFHLFKDGNCTCGDYW 574


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/566 (40%), Positives = 352/566 (62%), Gaps = 9/566 (1%)

Query: 21  LKPLQQVHAHLI--VAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFLFNT 76
           ++ L+Q+HA ++  V        +++K+LS    + F    YA++IF  IP+P  F +N+
Sbjct: 1   MQILRQIHARILTHVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNS 60

Query: 77  LIIRNSKANF-STDSLLFYRRMIVSNI-SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           +I         S + +  ++ M+     +P+ +T + V+K+C+ +  L  G+ +H  +  
Sbjct: 61  VIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILR 120

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
           SG+ S  +VQ++LVNFY+K   + +ARKVFD + ++++V W++M+SGY + G   EA+ +
Sbjct: 121 SGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIM 180

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           F  M+  G+ PD  + V VL+ACA +G +D+G+WVH +I  + + V++ L T+LINMYA+
Sbjct: 181 FREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAK 240

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CG + KAREIFD M   +  AW++MI G  +HG   +A+ +F RM     +PN+VTF+ +
Sbjct: 241 CGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGI 300

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           LSACAH GLV +G R ++SM  E G+ P +EH+ CMVDL  R GL++EAY F   +I   
Sbjct: 301 LSACAHGGLVSDGKRYWSSM-LELGIEPSMEHYGCMVDLLCRGGLIDEAYDFA--LIIPT 357

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P P +W  +L A   ++       VA  LL +EP    +Y++L+N+YA   ++++V  VR
Sbjct: 358 PDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVR 417

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
            +M + G+K   G +++EVD   + F  GD SHP   EI + L ++  +   +GY P   
Sbjct: 418 KMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFVS 477

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
             +H + +EE+E  L  HSE+LA+A+GLM+T    TIRIVKNLR+C DCH   K IS   
Sbjct: 478 VVLHLVNDEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIY 537

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
           +REIIVRDR+RFH F  G+CSC DYW
Sbjct: 538 DREIIVRDRVRFHKFVNGTCSCKDYW 563


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/573 (40%), Positives = 345/573 (60%), Gaps = 13/573 (2%)

Query: 17  AGPRLKPLQQVHAHLIVAGYG--RSRSMLTKLLSL---VCDAGFITYAQRIFF-CIPSPD 70
           A P L   +Q+HA  + A  G   S  +L K L        A  + YA  +    +PSPD
Sbjct: 30  ASPSLATAKQLHARALRAAPGVTPSHPLLAKHLLFHLAALKAPPLRYAVAVLSGLLPSPD 89

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
            F  NT++   + +     +L  +RR +     P  +T+  ++++CA L  L  G  +H 
Sbjct: 90  PFSLNTVLRIFASSARPRVALALHRRHLAP---PDTHTYPPLLQACARLLALRYGEGLHA 146

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNSMISGYEQNGFA 188
               +G  S + V+ +LV+ Y      + A +VFD +P  ++++V+WNS+++G+  NG  
Sbjct: 147 EACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRP 206

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
            E + +F  M +    PD  T V VL ACA++G + LGR VH F+   GL  N     +L
Sbjct: 207 NEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNAL 266

Query: 249 INMYARCGNVSKAREIF-DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           I++YA+CG V  AR++F +M     V++WT++I G  ++G+G +A++LF  M    + P 
Sbjct: 267 IDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPT 326

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            +T V VL AC+H GLV +G R F  M+ EYG+ P +EH  CMVDL GRAG + EA+ ++
Sbjct: 327 EITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYI 386

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
             +  E P   VW  +LGAC MHK  ++G      L+ ++P + G YV+LSN+YA  GR 
Sbjct: 387 TTMPLE-PNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRW 445

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
             V V+R  M+  G++K+ G+S VE+    Y F MGD+SHP T++IY+ L ++  R R  
Sbjct: 446 ADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQ 505

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           GY+P + + + ++E+EE+E +L YHSE+LA+AF L+++ PG  IRIVKNLR+C DCH AI
Sbjct: 506 GYIPHTSNVLADIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAI 565

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           K IS   +REIIVRDR RFHHFK G+CSC DYW
Sbjct: 566 KLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/612 (38%), Positives = 349/612 (57%), Gaps = 53/612 (8%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF----ITYAQRIFFCIPSPDSFLFNT 76
           ++ L Q+HA  I +G  R      ++L     +      + YA +IF  +P  + F +NT
Sbjct: 36  IRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNT 95

Query: 77  LIIRNSKANFSTDSL---LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +I   S+++     +   LFY  M    + P+ +TF +V+K+CA    +  G+ +H    
Sbjct: 96  IIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLAL 155

Query: 134 VSGYDSDLHVQAALVNFYA----------------------------------------- 152
             G+  D  V + LV  Y                                          
Sbjct: 156 KYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMI 215

Query: 153 ----KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
               +  +   AR +FD+M  +SVV+WN+MISGY  NGF K+A+ +F  M+   + P+  
Sbjct: 216 DGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYV 275

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           T V VL A ++LG ++LG W+H +    G+ ++ VL ++LI+MY++CG + KA  +F+ +
Sbjct: 276 TLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERL 335

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
              NVI W+AMI+G+ +HG   +A++ F +MR  GVRP++V ++ +L+AC+H GLV+EG 
Sbjct: 336 PRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGR 395

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
           R F+ M    GL P +EH+ CMVDL GR+GLL+EA +F+ + +  KP   +W A+LGAC+
Sbjct: 396 RYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILN-MPIKPDDVIWKALLGACR 454

Query: 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGY 448
           M  N ++G  VA  L+ + P + G YV LSN+YA  G    V  +R  M +K ++K  G 
Sbjct: 455 MQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGC 514

Query: 449 STVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYS 508
           S +++D   + F + D SHP   EI   L E+  + R AGY P +   +  LEEE++E  
Sbjct: 515 SLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENV 574

Query: 509 LRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHH 568
           L YHSEK+A AFGL+ TSPG  IRIVKNLR+C DCHS+IK IS    R+I VRDR RFHH
Sbjct: 575 LHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHH 634

Query: 569 FKRGSCSCLDYW 580
           F+ GSCSC+DYW
Sbjct: 635 FQDGSCSCMDYW 646


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/596 (38%), Positives = 355/596 (59%), Gaps = 37/596 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCD--AGFITYAQRIFFCIPSPDSFLFNTLI 78
           +K L+Q+ A +I         + TK L+L      G + YAQR+F  I SP++F++N +I
Sbjct: 1   MKQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAII 60

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
              S ++    + L Y++M+ S++  ++YTF  ++++C +L  +     VH  V   G+ 
Sbjct: 61  RAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFG 120

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF--- 195
           SD+    AL++ YA    +  AR++FD +P++  V+WN MI GY ++G  K A G+F   
Sbjct: 121 SDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDM 180

Query: 196 ---NL-------------------------MRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
              N+                         M++ G   D      +L ACA LG +D GR
Sbjct: 181 PLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGR 240

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM--SELNVIAWTAMISGYGM 285
           W+H +++  G+DV+ V+  +L+NMY +CG++ +A  +F  +  ++ +V  WTAMI G+ +
Sbjct: 241 WLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAI 300

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           HG G EA+E F+RMR  G+RPN++TF AVL AC++ GLV+EG  +F SM+  Y + P +E
Sbjct: 301 HGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIE 360

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ CMVDL GR+G L+EA + +K  +  KP+  +W A+L AC +H++F LG +V  HL+ 
Sbjct: 361 HYGCMVDLLGRSGRLDEAKELIKK-MPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVE 419

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           V+ ++ G Y+ L+ I A  G+      VR  M   G+    G S+V ++   + F  G +
Sbjct: 420 VDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQ 479

Query: 466 SHPNTNEIYQYLDELMGRCRE-AGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
            HP   +I   L ++  R R+  GY P ++  + +LE EE+E ++  HSEKLA+AFGL+ 
Sbjct: 480 DHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLIN 539

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           T PG TIR++KNLR+C DCH+  K +S   +REII+RDR+RFHHF+ GSCSC DYW
Sbjct: 540 TKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/559 (41%), Positives = 340/559 (60%), Gaps = 17/559 (3%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFLFNTLII 79
           K L+Q+HA ++  G        ++L++    + F  + YAQ++F  IP P+ + +NTLI 
Sbjct: 49  KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIR 108

Query: 80  RNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
             + ++    SLL + RM+  S   P  +TF  +IK+ + L  L  G+A H  V      
Sbjct: 109 AYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLG 168

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
           SD+ +  +L++FYAK   + +  +VF   P + VV+WNSMI+ + Q G  +EA+ LF  M
Sbjct: 169 SDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEM 228

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
               V P+  T V VL+ACA+  D + GRWVH +I    +  ++ L+ ++++MY +CG+V
Sbjct: 229 ETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSV 288

Query: 259 SKAREIFDMMSELNVIAWTAMISGY------------GMHGYGTEAVELFHRMRAHGVRP 306
             A+ +FD M E ++++WT M+ GY             MHG+G +A+ LF +M+   V+P
Sbjct: 289 EDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKP 348

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           N VTF  +L AC+H GLV+EG   F  M   YG+LPGV+H+ CMVD+ GRAGLL EA + 
Sbjct: 349 NAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVEL 408

Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
           ++  +   PA +VW A+LGAC +H+N  L  +    L+ +EP N G YV+LSNIYA AG+
Sbjct: 409 IEK-MPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGK 467

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE 486
            DRV  +R +M   GLKK  G S++EVD   + F +GD SHP+  +IY  LDE++ R   
Sbjct: 468 WDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLET 527

Query: 487 AGYVPESESAMHELEEEE-REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
            GYVP     +  +EEE+ +E +L  HSEKLA+AFGL+ T     IRIVKNLR+C DCHS
Sbjct: 528 IGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHS 587

Query: 546 AIKFISVATNREIIVRDRL 564
             K +S   +REI++RDR+
Sbjct: 588 VAKLVSKLYDREILLRDRV 606


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/588 (38%), Positives = 348/588 (59%), Gaps = 12/588 (2%)

Query: 1    MKNKQ--PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGF 55
            M+N++  P +  + ++L      + L+   Q+H  +  +G     ++   L+++    G 
Sbjct: 523  MQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGS 582

Query: 56   ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
            +  A+ +F  +   D   +  +I   +       ++  + +M      P   TFS+++K 
Sbjct: 583  LQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKV 642

Query: 116  CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
            C   + L+ G+ V  ++  SGY+ D  V  AL++ Y+KS ++  AR+VFD+MP + +V+W
Sbjct: 643  CTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSW 702

Query: 176  NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
            N +I+GY QNG  + A+     M++  V P+  + V +L AC+    ++ G+ VH  IV 
Sbjct: 703  NKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVK 762

Query: 236  QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
            + L  +V +  +LI+MYA+CG+  +A+E+FD + E NV+ W AMI+ Y  HG  ++A+  
Sbjct: 763  RKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGF 822

Query: 296  FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355
            F+ M   G++P+  TF ++LSAC HAGLV EG+++F+SM  EYG+LP +EH+ C+V L G
Sbjct: 823  FNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLG 882

Query: 356  RAGLLNEAYKFVKDVIGEKPAP---AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
            RA    EA    + +I + P P   AVW  +LGAC++H N  L    A + L +   NP 
Sbjct: 883  RARRFQEA----ETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPA 938

Query: 413  HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
             Y++LSN+YA AGR D V  +R +M  +G++K  G S +EVD   + F   D+SHP T E
Sbjct: 939  VYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAE 998

Query: 473  IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
            IY  L  L     EAGY P+++  +H+L +  +E SL  HSE+LA+A+GL++T PG  IR
Sbjct: 999  IYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIR 1058

Query: 533  IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            I KNLR+C DCH+A KFIS    REII RD  RFH FK G CSC DYW
Sbjct: 1059 IFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 205/399 (51%), Gaps = 12/399 (3%)

Query: 11  YEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y +IL A    K L+    +H+H+   G+     +   L+S+    G +  A+ +F+ +P
Sbjct: 333 YLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             D   +N +I   ++     +++  Y++M    + P   TF  ++ +CA+ S    G+ 
Sbjct: 393 KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKM 452

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H  +  SG  S+ H+  AL+N Y +  ++  A+ VF+    + V++WNSMI+G+ Q+G 
Sbjct: 453 IHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGS 512

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            + A  LF  M++  + PD+ T   VL+ C     ++LG+ +H  I   GL ++V L  +
Sbjct: 513 YETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNA 572

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           LINMY RCG++  AR +F  +   +V++WTAMI G    G   +A+ELF +M+  G RP 
Sbjct: 573 LINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPV 632

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
             TF ++L  C  +  + EG +V A  +   Y L  GV +   ++  + ++G + +A   
Sbjct: 633 KSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN--ALISAYSKSGSMTDA--- 687

Query: 367 VKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHL 403
            ++V  + P+  +  W  ++     +      VE A  +
Sbjct: 688 -REVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQM 725



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 215/415 (51%), Gaps = 18/415 (4%)

Query: 6   PHSPAYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   Y +IL A      L+  +++H+ +I AGY R   +   LLS+    G +  A+++
Sbjct: 126 PNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQV 185

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  I   D   +NT++   ++  +  + L  + +M    ISP   T+  ++ +    S+L
Sbjct: 186 FAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSML 245

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           + G+ +H      G +SD+ V  ALV    +  +VD A++ F    D+ VV +N++I+  
Sbjct: 246 DEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAAL 305

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q+G   EA   +  MR  GV  + TT + +L AC+    ++ G+ +H  I   G   +V
Sbjct: 306 AQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDV 365

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +  +LI+MYARCG++ KARE+F  M + ++I+W A+I+GY       EA+ L+ +M++ 
Sbjct: 366 QIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSE 425

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV+P  VTF+ +LSACA++    +G  +   + +  G+         +++++ R G L E
Sbjct: 426 GVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLME 484

Query: 363 AYKF-----VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPEN 410
           A         +DVI        W +M+     H +++   ++ + + +  +EP+N
Sbjct: 485 AQNVFEGTQARDVIS-------WNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 195/368 (52%), Gaps = 13/368 (3%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H   +  G      + T L+++    G +  A++ F      D  ++N LI   ++ 
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQH 308

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             + ++   Y RM    ++ +  T+ +++ +C+    L  G+ +H H+   G+ SD+ + 
Sbjct: 309 GHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG 368

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL++ YA+  ++  AR++F  MP + +++WN++I+GY +     EA+ L+  M+  GV 
Sbjct: 369 NALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVK 428

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P   T + +L+ACA       G+ +HE I+  G+  N  LA +L+NMY RCG++ +A+ +
Sbjct: 429 PGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNV 488

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+     +VI+W +MI+G+  HG    A +LF  M+   + P+N+TF +VLS C +   +
Sbjct: 489 FEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEAL 548

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAV 379
           + G ++   +  E GL   V     +++++ R G L +A         +DV+        
Sbjct: 549 ELGKQIHGRI-TESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS------- 600

Query: 380 WTAMLGAC 387
           WTAM+G C
Sbjct: 601 WTAMIGGC 608



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 190/366 (51%), Gaps = 3/366 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + +H  ++ +G   +  +   L+++    G +  AQ +F    + D   +N++I  +++ 
Sbjct: 451 KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQH 510

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
                +   ++ M    + P N TF++V+  C +   L LG+ +H  +  SG   D+++ 
Sbjct: 511 GSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLG 570

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL+N Y +  ++  AR VF  +  + V++W +MI G    G   +AI LF  M++ G  
Sbjct: 571 NALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFR 630

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P  +T   +L  C     +D G+ V  +I+  G +++  +  +LI+ Y++ G+++ ARE+
Sbjct: 631 PVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREV 690

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD M   ++++W  +I+GY  +G G  AVE  ++M+   V PN  +FV++L+AC+    +
Sbjct: 691 FDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSAL 750

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           +EG RV A + +   L   V     ++ ++ + G   EA +   ++I EK     W AM+
Sbjct: 751 EEGKRVHAEIVKR-KLQGDVRVGAALISMYAKCGSQGEAQEVFDNII-EKNV-VTWNAMI 807

Query: 385 GACKMH 390
            A   H
Sbjct: 808 NAYAQH 813



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 221/454 (48%), Gaps = 38/454 (8%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y A+L+   R + L   +++HA ++ A  G    +   L+++      +  A ++F  +P
Sbjct: 30  YVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMP 89

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             D   +N+LI   ++  F   +   +  M  +   P+  T+ +++ +C   + L  G+ 
Sbjct: 90  RRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKK 149

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H  +  +GY  D  VQ +L++ Y K  ++  AR+VF  +  + VV++N+M+  Y Q  +
Sbjct: 150 IHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAY 209

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            KE +GLF  M   G++PD  T + +L A      +D G+ +H+  V +GL+ ++ + T+
Sbjct: 210 VKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTA 269

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L+ M  RCG+V  A++ F   ++ +V+ + A+I+    HG+  EA E ++RMR+ GV  N
Sbjct: 270 LVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALN 329

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
             T++++L+AC+ +  ++ G  + + + ++ G    V+    ++ ++ R G L +A +  
Sbjct: 330 RTTYLSILNACSTSKALEAGKLIHSHISED-GHSSDVQIGNALISMYARCGDLPKARELF 388

Query: 368 -----KDVI----------------------------GEKPAPAVWTAMLGACKMHKNFD 394
                +D+I                            G KP    +  +L AC     + 
Sbjct: 389 YTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYA 448

Query: 395 LGVEVAEHLLSVEPENPGHYV-MLSNIYALAGRM 427
            G  + E +L    ++ GH    L N+Y   G +
Sbjct: 449 DGKMIHEDILRSGIKSNGHLANALMNMYRRCGSL 482



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 148/283 (52%), Gaps = 3/283 (1%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T+ A++++C    +L   + +H  +  +    D+ +   L+N Y K  +V  A +VF  M
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
           P + V++WNS+IS Y Q GF K+A  LF  M++ G  P+  T + +L AC    +++ G+
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +H  I+  G   +  +  SL++MY +CG++ +AR++F  +S  +V+++  M+  Y    
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
           Y  E + LF +M + G+ P+ VT++ +L A     ++ EG R+   +  E GL   +   
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIH-KLTVEEGLNSDIRVG 267

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
             +V +  R G ++ A +  K          V+ A++ A   H
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGTADRD--VVVYNALIAALAQH 308



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 121/252 (48%), Gaps = 10/252 (3%)

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           +  T V +L  C +   +   + +H  +V   +  ++ L+  LINMY +C +V  A ++F
Sbjct: 26  ERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
             M   +VI+W ++IS Y   G+  +A +LF  M+  G  PN +T++++L+AC     ++
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 326 EGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV-WTAM 383
            G ++ +  ++  Y   P V++   ++ ++G+ G L  A +      G  P   V +  M
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQVFA---GISPRDVVSYNTM 200

Query: 384 LG--ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
           LG  A K +    LG+        + P+    Y+ L + +     +D  + +  + +++G
Sbjct: 201 LGLYAQKAYVKECLGLFGQMSSEGISPDKV-TYINLLDAFTTPSMLDEGKRIHKLTVEEG 259

Query: 442 LKKHVGYSTVEV 453
           L   +   T  V
Sbjct: 260 LNSDIRVGTALV 271


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/582 (40%), Positives = 350/582 (60%), Gaps = 11/582 (1%)

Query: 6   PHSPAYEAILKAGPRLKPLQQV----HAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           P +  +  +LKA  RL     V    H+ +I  G+     + T L+ L    GF+T A++
Sbjct: 99  PDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARK 158

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  IP  +   +  +I    ++    ++L  +R ++   + P ++T   ++ +C+ +  
Sbjct: 159 VFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGD 218

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  GR +  ++  SG   ++ V  +LV+ YAK  +++ AR+VFD M +K VV W+++I G
Sbjct: 219 LASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQG 278

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y  NG  KEA+ +F  M+   V PD    V V +AC++LG ++LG W    + G     N
Sbjct: 279 YASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSN 338

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            VL T+LI+ YA+CG+V++A+E+F  M   + + + A+ISG  M G+   A  +F +M  
Sbjct: 339 PVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVK 398

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G++P+  TFV +L  C HAGLV +GHR F+ M   + + P +EH+ CMVDL  RAGLL 
Sbjct: 399 VGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLV 458

Query: 362 EAYKFVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           EA    +D+I   P  A   VW A+LG C++HK+  L   V + L+ +EP N GHYV+LS
Sbjct: 459 EA----QDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLS 514

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           NIY+ + R D  E +R+ + QKG++K  G S VEVD   + F +GD SHP +++IY+ L+
Sbjct: 515 NIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLE 574

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
            L    REAGY P +E  + ++EEEE+EY L  HSEKLA+AF L+ T     IR+VKNLR
Sbjct: 575 SLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLR 634

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH AIK +S  T REIIVRD  RFHHF  GSCSC DYW
Sbjct: 635 VCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 197/355 (55%), Gaps = 14/355 (3%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L   +Q H  L+  G  +   ++  LL          YA  +F   P P+ FL+NTLI  
Sbjct: 16  LHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRG 75

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS-ILNLGRAVHCHVFVSGYDS 139
               +   D++  Y  M     +P N+TF  V+K+C  L    ++G ++H  V  +G+D 
Sbjct: 76  MVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDW 135

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D+ V+  LV  Y+K+  +  ARKVFD +P+K+VV+W ++I GY ++G   EA+GLF  + 
Sbjct: 136 DVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLL 195

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
           + G+ PDS T V +L AC+++GD+  GRW+  ++   G   NV +ATSL++MYA+CG++ 
Sbjct: 196 EMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSME 255

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           +AR +FD M E +V+ W+A+I GY  +G   EA+++F  M+   VRP+    V V SAC+
Sbjct: 256 EARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACS 315

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEH------HVCMVDLFGRAGLLNEAYKFVK 368
             G ++ G+          GL+ G E          ++D + + G + +A +  K
Sbjct: 316 RLGALELGN-------WARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFK 363



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 165/327 (50%), Gaps = 16/327 (4%)

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN----NVDVARKVFDRMP 168
           +K C    + +L +A  CH  +      LH    L+N   +S+        A  VF + P
Sbjct: 5   LKKCFAWGLKSLHQAKQCHCLL--LRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTP 62

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD-IDLGR 227
             ++  +N++I G   N   ++A+ ++  MR  G  PD+ T   VL AC +L     +G 
Sbjct: 63  HPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGL 122

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +H  ++  G D +V + T L+ +Y++ G ++ AR++FD + E NV++WTA+I GY   G
Sbjct: 123 SLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESG 182

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
              EA+ LF  +   G+RP++ T V +L AC+  G +  G  +   MR E G +  V   
Sbjct: 183 CFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMR-ESGSVGNVFVA 241

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
             +VD++ + G + EA + V D + EK     W+A++   + + +  +  E  +    ++
Sbjct: 242 TSLVDMYAKCGSMEEARR-VFDGMVEKDV-VCWSALI---QGYASNGMPKEALDVFFEMQ 296

Query: 408 PEN--PGHYVMLSNIYALAGRMDRVEV 432
            EN  P  Y M+  +++   R+  +E+
Sbjct: 297 RENVRPDCYAMV-GVFSACSRLGALEL 322


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/559 (39%), Positives = 338/559 (60%), Gaps = 7/559 (1%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            +Q+H  +I +G     ++   L+++    G +  A  +F  +   +   +  +I   +  
Sbjct: 607  RQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQ 666

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
                 +   + +M      P   TFS+++K+C   + L+ G+ V  H+  SGY+ D  V 
Sbjct: 667  GEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVG 726

Query: 145  AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             AL++ Y+KS ++  ARKVFD+MP++ +++WN MI+GY QNG    A+     M++ GV 
Sbjct: 727  NALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVV 786

Query: 205  PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
             +  + V +L AC+    ++ G+ VH  IV + +  +V +  +LI+MYA+CG++ +A+E+
Sbjct: 787  LNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEV 846

Query: 265  FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
            FD  +E NV+ W AMI+ Y  HG  ++A++ F+ M   G++P+  TF ++LSAC H+GLV
Sbjct: 847  FDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLV 906

Query: 325  QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP---AVWT 381
             EG+R+F+S+  ++GL P +EH+ C+V L GRAG   EA    + +I + P P   AVW 
Sbjct: 907  MEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEA----ETLINQMPFPPDAAVWE 962

Query: 382  AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
             +LGAC++H N  L    A + L +   NP  YV+LSN+YA AGR D V  +R +M  +G
Sbjct: 963  TLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRG 1022

Query: 442  LKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE 501
            ++K  G S +EVD   + F   D+SHP T EIY+ L  L      AGY P+++  +H L+
Sbjct: 1023 IRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLD 1082

Query: 502  EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
            +E +E SL  HSE+LA+A+GL++T PG  IRI KNLR+C DCH+A KFIS    REII R
Sbjct: 1083 KEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIAR 1142

Query: 562  DRLRFHHFKRGSCSCLDYW 580
            D  RFH FK G CSC D+W
Sbjct: 1143 DSNRFHTFKNGKCSCEDFW 1161



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 190/359 (52%), Gaps = 6/359 (1%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y ++L A    K L   + +H+H+   G+     +   L+S+    G +  A+ +F  +P
Sbjct: 388 YLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP 447

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             D   +N +I   ++     +++  Y++M    + P   TF  ++ +C + S  + G+ 
Sbjct: 448 KRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKM 507

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H  +  SG  S+ H+  AL+N Y +  ++  A+ VF+    + +++WNSMI+G+ Q+G 
Sbjct: 508 IHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGS 567

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            + A  LF  M+  G+ PD  T   VL  C     ++LGR +H  I+  GL ++V L  +
Sbjct: 568 YEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNA 627

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           LINMY RCG++  A E+F  +   NV++WTAMI G+   G   +A ELF +M+  G +P 
Sbjct: 628 LINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPV 687

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
             TF ++L AC  +  + EG +V A  +   Y L  GV +   ++  + ++G + +A K
Sbjct: 688 KSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN--ALISAYSKSGSMTDARK 744



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/441 (25%), Positives = 212/441 (48%), Gaps = 35/441 (7%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L   +++HA ++ AG G    +   L+++      ++ A ++F  +P  D   +N+LI  
Sbjct: 98  LAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISC 157

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            ++  F   +   +  M  +   PS  T+ +++ +C   + L  G+ +H  +  +GY  D
Sbjct: 158 YAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRD 217

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
             VQ +L+N Y K  ++  AR+VF  +  + VV++N+M+  Y Q  + +E IGLF  M  
Sbjct: 218 PRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSS 277

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G+ PD  T + +L A      +D G+ +H+  V +GL+ ++ + T+L  M+ RCG+V+ 
Sbjct: 278 EGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAG 337

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A++  +  ++ +V+ + A+I+    HG+  EA E +++MR+ GV  N  T+++VL+AC+ 
Sbjct: 338 AKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACST 397

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL-------------------- 360
           +  +  G  + + +  E G    V+    ++ ++ R G L                    
Sbjct: 398 SKALGAGELIHSHI-SEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNA 456

Query: 361 -----------NEAYKFVKDVIGE--KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
                       EA K  K +  E  KP    +  +L AC     +  G  + E +L   
Sbjct: 457 IIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSG 516

Query: 408 PENPGHYV-MLSNIYALAGRM 427
            ++ GH    L N+Y   G +
Sbjct: 517 IKSNGHLANALMNMYRRCGSI 537



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 216/450 (48%), Gaps = 40/450 (8%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + +H  ++ +G   +  +   L+++    G I  AQ +F    + D   +N++I  +++ 
Sbjct: 506 KMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQH 565

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
                +   +  M    + P   TF++V+  C +   L LGR +H  +  SG   D+++ 
Sbjct: 566 GSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLG 625

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL+N Y +  ++  A +VF  +  ++V++W +MI G+   G  ++A  LF  M++ G  
Sbjct: 626 NALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFK 685

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P  +T   +L AC     +D G+ V   I+  G +++  +  +LI+ Y++ G+++ AR++
Sbjct: 686 PVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKV 745

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD M   ++++W  MI+GY  +G G  A++  ++M+  GV  N  +FV++L+AC+    +
Sbjct: 746 FDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSAL 805

Query: 325 QEGHRVFA------------------SMRQEYGLLPG--------VEHHV----CMVDLF 354
           +EG RV A                  SM  + G L           E +V     M++ +
Sbjct: 806 EEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAY 865

Query: 355 GRAGLLNEAYKFVK--DVIGEKPAPAVWTAMLGACK-----MHKNFDLGVEVAEHLLSVE 407
            + GL ++A  F    D  G KP  + +T++L AC      M  N       ++H LS  
Sbjct: 866 AQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPT 925

Query: 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
            E   HY  L  +   AGR    E + N M
Sbjct: 926 IE---HYGCLVGLLGRAGRFQEAETLINQM 952



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 187/362 (51%), Gaps = 3/362 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H   +  G      + T L ++    G +  A++        D  ++N LI   ++ 
Sbjct: 304 KRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQH 363

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++   Y +M    +  +  T+ +V+ +C+    L  G  +H H+   G+ SD+ + 
Sbjct: 364 GHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIG 423

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            +L++ YA+  ++  AR++F+ MP + +++WN++I+GY +     EA+ L+  M+  GV 
Sbjct: 424 NSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVK 483

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P   T + +L+AC        G+ +HE I+  G+  N  LA +L+NMY RCG++ +A+ +
Sbjct: 484 PGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNV 543

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+     ++I+W +MI+G+  HG    A +LF  M+  G+ P+ +TF +VL  C +   +
Sbjct: 544 FEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEAL 603

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           + G ++   +  E GL   V     +++++ R G L +AY+    +         WTAM+
Sbjct: 604 ELGRQIHM-LIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMS--WTAMI 660

Query: 385 GA 386
           G 
Sbjct: 661 GG 662



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 201/397 (50%), Gaps = 16/397 (4%)

Query: 6   PHSPAYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    Y +IL A      L+  +++H+ +I AGY R   +   LL++      +  A+++
Sbjct: 181 PSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQV 240

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  I   D   +NT++   ++  +  + +  + +M    I P   T+  ++ +    S+L
Sbjct: 241 FSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSML 300

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           + G+ +H      G +SD+ V  AL   + +  +V  A++  +   D+ VV +N++I+  
Sbjct: 301 DEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAAL 360

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q+G  +EA   +  MR  GV  + TT + VL AC+    +  G  +H  I   G   +V
Sbjct: 361 AQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDV 420

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +  SLI+MYARCG++ +ARE+F+ M + ++I+W A+I+GY       EA++L+ +M++ 
Sbjct: 421 QIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSE 480

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV+P  VTF+ +LSAC ++    +G  +   + +  G+         +++++ R G + E
Sbjct: 481 GVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSIME 539

Query: 363 AYKF-----VKDVIGEKPAPAVWTAMLGACKMHKNFD 394
           A         +D+I        W +M+     H +++
Sbjct: 540 AQNVFEGTRARDIIS-------WNSMIAGHAQHGSYE 569



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 144/295 (48%), Gaps = 19/295 (6%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           ++++C     L   + +H  +  +G   D+ +   L+N Y K  +V  A +VF +MP + 
Sbjct: 88  LVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRD 147

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           V++WNS+IS Y Q GF K+A  LF  M+  G  P   T + +L AC    +++ G+ +H 
Sbjct: 148 VISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHS 207

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
            I+  G   +  +  SL+NMY +C ++  AR++F  +   +V+++  M+  Y    Y  E
Sbjct: 208 KIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEE 267

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
            + LF +M + G+ P+ VT++ +L A     ++ EG R+      E GL   +     + 
Sbjct: 268 CIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNE-GLNSDIRVGTALA 326

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPA--------PAVWTAMLGACKMHKNFDLGVE 398
            +F R G          DV G K A          V+ A++ A   H +++   E
Sbjct: 327 TMFVRCG----------DVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFE 371


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/579 (38%), Positives = 355/579 (61%), Gaps = 5/579 (0%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+S    +IL    +   L Q   +HA+ I   +  +  + T LL +      + YA++I
Sbjct: 208 PNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKI 267

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSI 121
           F  +   +   ++ +I      +  +D+L  Y  M+ +  ++P+  T + ++++CA L+ 
Sbjct: 268 FNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTD 327

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +HCH+  SG D D  V  +L++ YAK   +D A    D M  K  V+++++ISG
Sbjct: 328 LKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISG 387

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             QNG+A++A+ +F  M+  G+ P   T + +L AC+ L  +  G   H + V +G   +
Sbjct: 388 CVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTND 447

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +  ++I+MY++CG ++ +REIFD M   ++I+W  MI GYG+HG   EA+ LF  ++A
Sbjct: 448 TSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQA 507

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G++P++VT +AVLSAC+H+GLV EG   F+SM Q + + P + H++CMVDL  RAG L+
Sbjct: 508 LGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLD 567

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EAY F++  +   P   +W A+L AC+ HKN ++G +V++ +  + PE  G++V++SNIY
Sbjct: 568 EAYTFIQR-MPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIY 626

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           +  GR D    +R+I    G KK  G S VE+    ++F  G +SHP +  I + L EL+
Sbjct: 627 SSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQELL 686

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            + ++ GY  +S   +H++EEEE+E  L YHSEK+A+AFG++ TSP   I + KNLR+CV
Sbjct: 687 VQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVTKNLRICV 746

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSAIKFI++ T REI VRD  RFHHFK G C+C D+W
Sbjct: 747 DCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 181/335 (54%), Gaps = 6/335 (1%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           I  A+ +F  IP P   L+N +I   + +     S+  Y  M+   ++P+N+TF  ++K+
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVV 173
           C+ L  L LGR +H H  + G   DL+V  AL++ YAK  ++  A+ +F+ +   D+ +V
Sbjct: 117 CSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIV 176

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           AWN+MI+ +  +    + I     M+  GV P+S+T V +L    Q   +  G+ +H + 
Sbjct: 177 AWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYY 236

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +      NVVL T+L++MYA+C  +  AR+IF+ +++ N + W+AMI GY +H   ++A+
Sbjct: 237 IRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDAL 296

Query: 294 ELFHRMRA-HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
            L+  M   +G+ P   T   +L ACA    ++ G ++   M +  G+         ++ 
Sbjct: 297 ALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKS-GMDLDTTVGNSLIS 355

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
           ++ + G+++ A  F+ ++I +      ++A++  C
Sbjct: 356 MYAKCGIMDNAVGFLDEMIAKDTVS--YSAIISGC 388



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 174/350 (49%), Gaps = 16/350 (4%)

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
           DSD      L  ++   N + +AR VFD++P  SVV WN MI  Y  +G  +++I L+  
Sbjct: 39  DSDA-AATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLH 97

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M   GV P + T   +L AC+ L  + LGR +H      GL +++ ++T+L++MYA+CG+
Sbjct: 98  MLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGH 157

Query: 258 VSKAREIFDMMS--ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           + +A+ +F+ +S  + +++AW AMI+ +  H    + +    +M+  GV PN+ T V++L
Sbjct: 158 LYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSIL 217

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
                A  + +G  + A   + +     V     ++D++ +  LL  A K    V   K 
Sbjct: 218 PTIGQANALHQGKAIHAYYIRNF-FFDNVVLQTALLDMYAKCHLLFYARKIFNTV--NKK 274

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD--RVEVV 433
               W+AM+G   +H +    + + + +L +   NP    + + + A A   D  R + +
Sbjct: 275 NDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKL 334

Query: 434 RNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
              MI+ G+        ++    N L SM  K     N +  +LDE++ +
Sbjct: 335 HCHMIKSGMD-------LDTTVGNSLISMYAKCGIMDNAV-GFLDEMIAK 376


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/580 (37%), Positives = 354/580 (61%), Gaps = 6/580 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDA---GFITYAQR 61
            P+ P    ++      + L Q+ A+ I   +    S  TKL++   ++     ++YA+ 
Sbjct: 28  NPNPPNPILLISKCNSERELMQIQAYAI-KSHQEDVSFNTKLINFCTESPTESSMSYARH 86

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +  PD  +FN++    S++    +    +  ++  ++ P NYTF +++K+CA    
Sbjct: 87  LFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKA 146

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  GR +HC     G D +++V   L+N Y +  +VD AR VFDR+ +  VV +N+MI+G
Sbjct: 147 LEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITG 206

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y +     EA+ LF  M+   + P+  T + VL++CA LG +DLG+W+HE+    G    
Sbjct: 207 YARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKY 266

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V + T+LI+M+A+CG++  A  IF+ M   +  AW+AMI  Y  HG    ++ +F RMR+
Sbjct: 267 VKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRS 326

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             V+P+ +TF+ +L+AC+H GLV+EG   F+ M  E+G++P ++H+  MVDL GRAG L 
Sbjct: 327 ENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLE 386

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           +AY+F+ D +   P P +W  +L AC  H N +L  +V+E +L ++  + G YV+LSN+Y
Sbjct: 387 DAYEFI-DKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLY 445

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A   + + V+ +R +M  +   K  G S++EV+   + F  GD     T ++++ LDE++
Sbjct: 446 ARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMV 505

Query: 482 GRCREAGYVPESESAMH-ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
              + AGYVP++   +H ++ ++E+E +LRYHSEKLA+AFGL+ T PG TIR+VKNLR+C
Sbjct: 506 KELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVC 565

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCHSA K IS+   R++++RD  RFHHF+ G CSC D+W
Sbjct: 566 RDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/579 (39%), Positives = 338/579 (58%), Gaps = 4/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    Y  +L A   L  L+   Q+HAH++ + Y     + T L  +    G    A+ 
Sbjct: 227 RPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDARE 286

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F C+   D   +NT+I     +    ++   + RM+   ++P   T++ V+ +CA    
Sbjct: 287 VFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGG 346

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +H      G  SD+    AL+N Y+K+ ++  AR+VFDRMP + VV+W +++  
Sbjct: 347 LARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGR 406

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y       E+   F  M   GV  +  T +CVL AC+    +  G+ +H  +V  GL  +
Sbjct: 407 YADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLAD 466

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +  +L++MY +CG+V  A  +F+ MS  +V+ W  +I G G +G G EA++ +  M++
Sbjct: 467 LAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKS 526

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+RPN  TFV VLSAC    LV+EG R FA M ++YG++P  +H+ CMVD+  RAG L 
Sbjct: 527 EGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLR 586

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA   +   I  KP+ A+W A+L AC++H N ++G   AEH L +EP+N G YV LS IY
Sbjct: 587 EAEDVIL-TIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIY 645

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AG    V  +R  M ++G+KK  G S +E+  + + F   D+SHP T EIY  L+ L 
Sbjct: 646 AAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLK 705

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            + +  GYVP++   MH+L++E +E ++ +HSEKLA+A+GL+ T PG  IRI KNLR+C 
Sbjct: 706 KQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCT 765

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+A KFIS  T REII RD  RFHHFK G CSC DYW
Sbjct: 766 DCHTATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 198/389 (50%), Gaps = 10/389 (2%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           K  Q  S  Y  +L++  + K L   +QVH H++  G   +  +   LL L    G +  
Sbjct: 22  KGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNE 81

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+++F    +     +N +I   +    + ++   +  M    + P  +TF +++ +C+ 
Sbjct: 82  ARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSS 141

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
            ++LN GR +H  V  +G  +D  V  AL++ YAK  +V  AR+VFD M  +  V+W ++
Sbjct: 142 PAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTL 201

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
              Y ++G+ +E++  ++ M    V P   T + VL+AC  L  ++ G+ +H  IV    
Sbjct: 202 TGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEY 261

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             +V ++T+L  MY +CG    ARE+F+ +S  +VIAW  MI G+   G   EA   FHR
Sbjct: 262 HSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHR 321

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M   GV P+  T+  VLSACA  G +  G  + A   ++ GL+  V     +++++ +AG
Sbjct: 322 MLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKD-GLVSDVRFGNALINMYSKAG 380

Query: 359 LLNEAYKFVKDVIGEKPAPAV--WTAMLG 385
            + +A    + V    P   V  WT +LG
Sbjct: 381 SMKDA----RQVFDRMPKRDVVSWTTLLG 405



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 192/367 (52%), Gaps = 13/367 (3%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H  ++ AG     ++   L+S+    G +  A+R+F  + S D   + TL    +++
Sbjct: 149 REIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAES 208

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            +  +SL  Y  M+   + PS  T+  V+ +C  L+ L  G+ +H H+  S Y SD+ V 
Sbjct: 209 GYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVS 268

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL   Y K      AR+VF+ +  + V+AWN+MI G+  +G  +EA G F+ M + GV 
Sbjct: 269 TALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVA 328

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD  T   VL+ACA+ G +  G+ +H      GL  +V    +LINMY++ G++  AR++
Sbjct: 329 PDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQV 388

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD M + +V++WT ++  Y       E+   F +M   GV+ N +T++ VL AC++   +
Sbjct: 389 FDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVAL 448

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEKPAPAV 379
           + G  + A + +  GLL  +     ++ ++ + G + +A +      ++DV+        
Sbjct: 449 KWGKEIHAEVVKA-GLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVV-------T 500

Query: 380 WTAMLGA 386
           W  ++G 
Sbjct: 501 WNTLIGG 507


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/526 (41%), Positives = 333/526 (63%), Gaps = 1/526 (0%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIK 114
           I   +++F  +P  D   +NT+I   ++     ++L   R M  +  + P ++T S+++ 
Sbjct: 176 IDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILP 235

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
             A    +N G+ +H +   +G+D D+ + ++L++ YAK N ++ + + F  +P K  ++
Sbjct: 236 IFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAIS 295

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           WNS+I+G  QNG     +G F  M    V P + +   V+ ACA L  + LGR +H  IV
Sbjct: 296 WNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIV 355

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             G D N  +A+SL++MYA+CGN+  AR +FD + + +++AWTA+I G  MHG+  +AV 
Sbjct: 356 RLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVS 415

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
           LF  M   GVRP  V F+AVL+AC+HAGLV EG R F SM +++G+ PG+EH+  + DL 
Sbjct: 416 LFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLL 475

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
           GRAG L EAY F+ ++ G +P  +VW+ +L AC+ HK+ +L  +V + LLSV+ EN G Y
Sbjct: 476 GRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAY 535

Query: 415 VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIY 474
           V++SNIY+ A R      +R  M +KGLKK    S +EV  + + F  GDKSHP  ++I 
Sbjct: 536 VLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKIN 595

Query: 475 QYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIV 534
           + LD L+ +  + GYV ++   +H+++EE +   L  HSE+LA+A+G++ T+ G TIR++
Sbjct: 596 KALDVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVI 655

Query: 535 KNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KN+R+C DCH+AIKFI+    REI VRD  RFHHFK GSCSC DYW
Sbjct: 656 KNIRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 170/323 (52%), Gaps = 25/323 (7%)

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN---- 156
           ++ P+ + F +++K+   L    L  ++H      G DSDL++  AL+N YAK +N    
Sbjct: 105 SVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKV 164

Query: 157 -----------VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN- 204
                      +D  +KVFD MP + VV+WN++I+G+ QNG   EA+   +++R+ G N 
Sbjct: 165 FDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEAL---DMVREMGKNG 221

Query: 205 ---PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
              PDS T   +L   A+  D++ G+ +H + V  G D +V + +SLI+MYA+C  +  +
Sbjct: 222 KLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECS 281

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
              F ++   + I+W ++I+G   +G     +  F RM    V+P  V+F +V+ ACAH 
Sbjct: 282 LRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHL 341

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
             +  G ++   + +  G          +VD++ + G +  A ++V D I ++   A WT
Sbjct: 342 TALSLGRQLHGCIVR-LGFDDNEFIASSLVDMYAKCGNIKMA-RYVFDRIDKRDMVA-WT 398

Query: 382 AMLGACKMHKNFDLGVEVAEHLL 404
           A++  C MH +    V + E++L
Sbjct: 399 AIIMGCAMHGHALDAVSLFENML 421



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 116/257 (45%), Gaps = 29/257 (11%)

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           AW+S+I  Y  +     +   FN MR   V P+      +L A   L    L   +H   
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSK---------------AREIFDMMSELNVIAWTA 278
           V  GLD ++ +A +LIN YA+  N  K                +++FDMM   +V++W  
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 279 MISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           +I+G+  +G   EA+++   M  +G ++P++ T  ++L   A    V +G  +       
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHG----- 251

Query: 338 YGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
           Y +  G +  V     ++D++ +   L  + +    ++  K A + W +++  C  +  F
Sbjct: 252 YAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFY-ILPRKDAIS-WNSIIAGCVQNGEF 309

Query: 394 DLGVEVAEHLL--SVEP 408
           D G+     +L  +V+P
Sbjct: 310 DRGLGFFRRMLKENVKP 326


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/540 (39%), Positives = 342/540 (63%), Gaps = 5/540 (0%)

Query: 41  SMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS 100
           +M+T LL     +G +  ++R+F  +   DS  + T+I    +     +++  +R M   
Sbjct: 209 TMITGLLR----SGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQE 264

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
            ++   YTF +V+ +C  L  L  G+ +H  +  SGY+ ++ V +ALV+ Y K  +V  A
Sbjct: 265 GMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYA 324

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
             VF RM +K+VV+W +M+ GY QNGF++EA+ +F  M+  G+ PD  T   V+++CA L
Sbjct: 325 EAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANL 384

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             ++ G   H   +  GL   + ++ +LI +Y +CG++  + ++FD MS  + ++WTA++
Sbjct: 385 ASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALV 444

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           SGY   G   E ++LF RM   G++P+ VTF+AVLSAC+ AGLV+ G + F SM +++G+
Sbjct: 445 SGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGI 504

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
           +P  +H+ CM+DLFGRAG L EA  F+ + +   P    W  +L +C+++ N ++G   A
Sbjct: 505 IPFSDHYTCMIDLFGRAGRLEEAKNFI-NKMPFSPDSIGWATLLSSCRLYGNEEIGKWAA 563

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           E LL ++P+NP  Y++LS+IYA  G+   V  +R  M +KG +K  G+S ++   K Y+F
Sbjct: 564 ESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIF 623

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
           S  D+S P +++IY  L++L  +  E GYVP++ S +H++E+ E+   L +HSEKLA+AF
Sbjct: 624 SADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKMLNHHSEKLAIAF 683

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+    G+ IR+VKNLR+C DCH+A K+IS  + REI+VRD +RFH FK G+CSC D+W
Sbjct: 684 GLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 129/511 (25%), Positives = 227/511 (44%), Gaps = 99/511 (19%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H  +I +       +   L++     G ITYA+ +F  +P P+SF +NT++   SK+
Sbjct: 25  KKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKS 84

Query: 85  -NFSTDSLLF------------------------------YRRMIVSNISPSN-YTFSAV 112
            + ST   +F                              Y  M+   +   N  TFS +
Sbjct: 85  GDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTM 144

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           +   +    ++LGR +H  +   G+ + + V ++LV+ YAK   V VA +VFD + +++V
Sbjct: 145 LLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNV 204

Query: 173 V-------------------------------AWNSMISGYEQNGFAKEAIGLFNLMRDF 201
           V                               +W +MI+G  QNG   EA+ LF  MR  
Sbjct: 205 VMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQE 264

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G+  D  T   VL AC  L  +  G+ +H  I+  G + NV + ++L++MY +C +V  A
Sbjct: 265 GMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYA 324

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
             +F  M+  NV++WTAM+ GYG +G+  EAV +F  M+ +G+ P++ T  +V+S+CA+ 
Sbjct: 325 EAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANL 384

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD------------ 369
             ++EG + F       GL+  +     ++ L+G+ G + ++ +   +            
Sbjct: 385 ASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTAL 443

Query: 370 ---------------------VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
                                V G KP    + A+L AC      + G +  E +L    
Sbjct: 444 VSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHG 503

Query: 409 ENP--GHYVMLSNIYALAGRMDRVEVVRNIM 437
             P   HY  + +++  AGR++  +   N M
Sbjct: 504 IIPFSDHYTCMIDLFGRAGRLEEAKNFINKM 534



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 144/279 (51%), Gaps = 5/279 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  +++H  +I +GY  +  + + L+ + C    + YA+ +F  + + +   +  +++ 
Sbjct: 286 LKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVG 345

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
             +  FS +++  +  M  + I P ++T  +VI SCA+L+ L  G   HC   VSG  S 
Sbjct: 346 YGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISF 405

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           + V  AL+  Y K  +++ + ++FD M  +  V+W +++SGY Q G A E I LF  M  
Sbjct: 406 ITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLV 465

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
            G+ PD+ T + VL+AC++ G ++ G ++    +   G+       T +I+++ R G + 
Sbjct: 466 QGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLE 525

Query: 260 KAREIFDMMS-ELNVIAWTAMISG---YGMHGYGTEAVE 294
           +A+   + M    + I W  ++S    YG    G  A E
Sbjct: 526 EAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAE 564



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 145/338 (42%), Gaps = 74/338 (21%)

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           K C         + +HC +  S  + +  +   L+N Y+K  N+  AR VFD+MP  +  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 174 AWNSMISGYEQNGFAK-------------------------------EAIGLFN-LMRDF 201
           +WN+M+S Y ++G                                  EA+  +N +M+D 
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDG 132

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
            +N +  T   +L   +  G +DLGR +H  IV  G    V + +SL++MYA+ G VS A
Sbjct: 133 VLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVA 192

Query: 262 REIFDMMSELNV-------------------------------IAWTAMISGYGMHGYGT 290
            ++FD + E NV                               I+WT MI+G   +G   
Sbjct: 193 SQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEA 252

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV-- 348
           EA++LF  MR  G+  +  TF +VL+AC     ++EG  +   +     +  G  H+V  
Sbjct: 253 EAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLI-----IRSGYNHNVFV 307

Query: 349 --CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
              +VD++ +   +  A    K +  +      WTAML
Sbjct: 308 GSALVDMYCKCRSVRYAEAVFKRMANKNVVS--WTAML 343


>gi|255556057|ref|XP_002519063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541726|gb|EEF43274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 386

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/347 (62%), Positives = 271/347 (78%), Gaps = 5/347 (1%)

Query: 1   MKNKQ----PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFI 56
           M+ KQ    PHSPAY  +L+AGPRLKPLQQVHA++IV+G G SRS+LTKLL+L C AG I
Sbjct: 1   METKQFCQLPHSPAYHFLLQAGPRLKPLQQVHAYVIVSGSGHSRSLLTKLLNLACAAGSI 60

Query: 57  TYAQRIFFCIPSPDSFLFNTLIIRNSKAN-FSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
            Y ++IF  + +PDSFLFNTLI   SK + FS  SL FY  M++S+ISPS YTF++++KS
Sbjct: 61  IYTRQIFLSVANPDSFLFNTLIKSTSKFHKFSIYSLFFYNCMLLSDISPSAYTFTSIVKS 120

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           CA LS L LG+ VH HV V+G+  D++VQAALV  YAKS ++  ARKVFD+M ++SVV+W
Sbjct: 121 CADLSSLKLGKVVHGHVLVNGFGLDVYVQAALVACYAKSGDLGNARKVFDKMRERSVVSW 180

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           NS+ISGYEQNGF +EAI LF  MR+ G  PDS T V VL+ACAQLG + +G WVH++ +G
Sbjct: 181 NSIISGYEQNGFGREAIRLFKKMREEGFEPDSATFVIVLSACAQLGALSMGCWVHKYTIG 240

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
            GLD+NVVL TSLINMY RCG V+KARE+FD M E NV+ WTAMISGYG +G+G +AV+L
Sbjct: 241 HGLDLNVVLGTSLINMYTRCGTVTKAREVFDSMKEKNVVTWTAMISGYGTNGHGRQAVQL 300

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
           F  M+  G  PN+VTFVAVLSACAHAGLV+EG +VF SMR+EY L P
Sbjct: 301 FDEMKRRGPCPNSVTFVAVLSACAHAGLVKEGWQVFVSMREEYHLKP 347


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/576 (38%), Positives = 345/576 (59%), Gaps = 20/576 (3%)

Query: 9   PAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCD---AGFITYAQRIFFC 65
           P   +++     LK L+Q+ A+ I   Y  + +++TK ++          + +A ++F  
Sbjct: 27  PHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQ 86

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           I  P+  LFNT+    ++ N   D L    RMI          F   ++  + +  L  G
Sbjct: 87  ITQPNIVLFNTMARGYARLN---DPL----RMITH--------FRRCLRLVSKVKALAEG 131

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           + +HC     G   +++V   L+N Y    ++D +R+VFD++ +  VVA+N++I    +N
Sbjct: 132 KQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARN 191

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
             A EA+ LF  +++ G+ P   T + VL++CA LG +DLGRW+HE++   G D  V + 
Sbjct: 192 NRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVN 251

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           T+LI+MYA+CG++  A  +F  M + +  AW+A+I  Y  HG G +A+ + + M+   V+
Sbjct: 252 TTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQ 311

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           P+ +TF+ +L AC+H GLV+EG   F  M  EYG++P ++H+ CMVDL GRAG L+EAYK
Sbjct: 312 PDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYK 371

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
           F+ D +  KP P +W  +L AC  H N ++G  V E +  ++  + G YV+ SN+ A  G
Sbjct: 372 FI-DELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYG 430

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
           + D V  +R  MI KG  K  G S++EV+   + F  G+  H  +  +++ LDEL+   +
Sbjct: 431 KWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELK 490

Query: 486 EAGYVPESESAMH-ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
            AGYVP++    + ++E+EE+E  LRYHSEKLA+ FGL+ T PG TIR+VKNLR+C DCH
Sbjct: 491 SAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCH 550

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +A KFIS+   R+II+RD  RFHHFK G CSC DYW
Sbjct: 551 NAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/578 (38%), Positives = 345/578 (59%), Gaps = 4/578 (0%)

Query: 6    PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
            P+   Y +ILK   RL  L+   Q+H+ +I   +  +  + + L+ +    G +  A  I
Sbjct: 471  PNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDI 530

Query: 63   FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
                   D   + T+I   ++ NF   +L  +R+M+   I       +  + +CA L  L
Sbjct: 531  LIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQAL 590

Query: 123  NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
              G+ +H    VSG+ SDL  Q ALV  Y+K  N++ A   F++      +AWN+++SG+
Sbjct: 591  KEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGF 650

Query: 183  EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            +Q+G  +EA+ +F  M   G++ ++ T    + A ++  ++  G+ VH  I   G D   
Sbjct: 651  QQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSET 710

Query: 243  VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
             +  ++I+MYA+CG++S A++ F  +S  N ++W AMI+ Y  HG+G+EA++ F +M   
Sbjct: 711  EVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHS 770

Query: 303  GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
             VRPN+VT V VLSAC+H GLV +G   F SM  EYGL P  EH+VC+VD+  RAGLL+ 
Sbjct: 771  NVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSR 830

Query: 363  AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
            A  F+ ++  E P   VW  +L AC +HKN ++G   A HLL +EPE+   YV+LSN+YA
Sbjct: 831  AKDFILEMPIE-PDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 889

Query: 423  LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            +  + D  ++ R  M +KG+KK  G S +EV    + F +GD++HP  +EI++Y  +L  
Sbjct: 890  VCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTK 949

Query: 483  RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
            R  E GYV +  S + EL++E+++ ++  HSEKLA++FGL+     M I ++KNLR+C D
Sbjct: 950  RASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCND 1009

Query: 543  CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            CH  IKF+S  +NREIIVRD  RFHHF+ G+CSC DYW
Sbjct: 1010 CHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 178/366 (48%), Gaps = 3/366 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           QQ+HA+    G+  +  +   LL+L      I  A   F      +  L+N +++     
Sbjct: 392 QQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLL 451

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           +   +S   +R+M +  I P+ YT+ +++K+C  L  L LG  +H  +  + +  + +V 
Sbjct: 452 DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVC 511

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           + L++ YAK   +D A  +  R   K VV+W +MI+GY Q  F  +A+  F  M D G+ 
Sbjct: 512 SVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIR 571

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            D       ++ACA L  +  G+ +H      G   ++    +L+ +Y++CGN+ +A   
Sbjct: 572 SDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLA 631

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+     + IAW A++SG+   G   EA+ +F RM   G+  NN TF + + A +    +
Sbjct: 632 FEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANM 691

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           ++G +V A + +  G     E    ++ ++ + G +++A K   ++  +      W AM+
Sbjct: 692 KQGKQVHAVITKT-GYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVS--WNAMI 748

Query: 385 GACKMH 390
            A   H
Sbjct: 749 NAYSKH 754



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 194/399 (48%), Gaps = 12/399 (3%)

Query: 2   KNKQPHSPAYEAILKA----GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           +N  P+   +  +L+A          ++Q+HA +I  G G+S  +   L+ L    GF+ 
Sbjct: 163 ENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVD 222

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A+R+F  +   D   +  +I   SK     +++  +  M V  I P+ Y FS+V+ +C 
Sbjct: 223 RARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACK 282

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            +  L +G  +H  V   G+ SD +V  ALV+ Y    ++  A  +F  M  +  V +N+
Sbjct: 283 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNT 342

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +I+G  Q G+ ++A+ LF  M+  G+ PDS T   ++ AC+  G +  G+ +H +    G
Sbjct: 343 LINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLG 402

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
              N  +  +L+N+YA+C ++  A   F      NV+ W  M+  YG+      +  +F 
Sbjct: 403 FASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR 462

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFG 355
           +M+   + PN  T+ ++L  C   G ++ G ++ + + +    L     +VC  ++D++ 
Sbjct: 463 QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNA---YVCSVLIDMYA 519

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
           + G L+ A+  +    G+      WT M+     + NFD
Sbjct: 520 KLGKLDTAWDILIRFAGKDVVS--WTTMIAGYTQY-NFD 555



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 197/398 (49%), Gaps = 8/398 (2%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P   A+ ++L A  +++ L+   Q+H  ++  G+     +   L+SL    G +  A+ I
Sbjct: 269 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHI 328

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   D+  +NTLI   S+  +   ++  ++RM +  + P + T ++++ +C+    L
Sbjct: 329 FSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTL 388

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+ +H +    G+ S+  ++ AL+N YAK ++++ A   F     ++VV WN M+  Y
Sbjct: 389 FSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAY 448

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
                 + +  +F  M+   + P+  T   +L  C +LGD++LG  +H  I+     +N 
Sbjct: 449 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNA 508

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            + + LI+MYA+ G +  A +I    +  +V++WT MI+GY  + +  +A+  F +M   
Sbjct: 509 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 568

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+R + V     +SACA    ++EG ++ A      G    +     +V L+ + G + E
Sbjct: 569 GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPFQNALVTLYSKCGNIEE 627

Query: 363 AY-KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           AY  F +   G+  A   W A++   +   N +  + V
Sbjct: 628 AYLAFEQTEAGDNIA---WNALVSGFQQSGNNEEALRV 662



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/492 (24%), Positives = 229/492 (46%), Gaps = 37/492 (7%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           N Q      E  LK    L   +++H+ ++  G+  +  +  KLL      G +  A ++
Sbjct: 66  NHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKV 125

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI- 121
           F  +P    F +N +I   +  + S      + RM+  N++P+  TFS V+++C   S+ 
Sbjct: 126 FDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVA 185

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
            ++   +H  +   G      V   L++ Y+++  VD AR+VFD +  K   +W +MISG
Sbjct: 186 FDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISG 245

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             +N    EAI LF  M   G+ P       VL+AC ++  +++G  +H  ++  G   +
Sbjct: 246 LSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSD 305

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +  +L+++Y   G++  A  IF  MS+ + + +  +I+G    GYG +A+ELF RM+ 
Sbjct: 306 TYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQL 365

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRV--------FASMRQ----------------- 336
            G+ P++ T  +++ AC+  G +  G ++        FAS  +                 
Sbjct: 366 DGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIET 425

Query: 337 --EYGLLPGVEHHVCMVDLFGRAGLLNE---AYKFVKDVIGEKPAPAVWT--AMLGACKM 389
              Y L   VE+ V    +    GLL++   +++  + +  E+  P  +T  ++L  C  
Sbjct: 426 ALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR 485

Query: 390 HKNFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGY 448
             + +LG ++   ++    + N     +L ++YA  G++D      +I+I+   K  V +
Sbjct: 486 LGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLD---TAWDILIRFAGKDVVSW 542

Query: 449 STVEVDQKNYLF 460
           +T+      Y F
Sbjct: 543 TTMIAGYTQYNF 554



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 4/232 (1%)

Query: 102 ISPSNYTFSAVIKSCAHLS-ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
           I P++ T   +++ C   +  L+ GR +H  +   G+D++  +   L++FY    ++D A
Sbjct: 63  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGA 122

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
            KVFD MP++++  WN MI        + +   LF  M +  V P+  T   VL AC + 
Sbjct: 123 LKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC-RG 181

Query: 221 GDI--DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
           G +  D+   +H  I+ QGL  + ++   LI++Y+R G V +AR +FD +   +  +W A
Sbjct: 182 GSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVA 241

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
           MISG   +    EA+ LF  M   G+ P    F +VLSAC     ++ G ++
Sbjct: 242 MISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL 293


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/556 (40%), Positives = 337/556 (60%), Gaps = 1/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H+ L+         +   L+ +    G +  A+ +F  +P  D  ++N++I   S  
Sbjct: 309 RQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNC 368

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            +  +++  +  M    +  +  T S ++KS A          VH     SGY  D +V 
Sbjct: 369 GYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVA 428

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            +L++ Y K   ++ A KVF+  P + +VA+ SMI+ Y Q G  +EA+ ++  M+D  + 
Sbjct: 429 NSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIK 488

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD+     +  ACA L   + G+ +H  ++  GL  +V    SL+NMYA+CG++  A  I
Sbjct: 489 PDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCI 548

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ +S   +++W+AMI G   HG+G +A++LF++M  +G+ PN++T V+VLSAC HAGLV
Sbjct: 549 FNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLV 608

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            E  R F  M + +G+ P  EH+ CMVD+ GR G L+EA   VK++  +  A AVW A+L
Sbjct: 609 TEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASA-AVWGALL 667

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GA ++HKN +LG   AE LL++EPE  G +++L+NIYA  G  D V  VR  M    +KK
Sbjct: 668 GAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKK 727

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S +E+  K Y F +GD+SHP + EIY  LD+L  R   AGYVP  E+ +H++E+ E
Sbjct: 728 EPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIE 787

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E  L +HSEKLA+AFGL+ T PG  IR+ KNLR+C+DCH+A KFIS   +REIIVRD  
Sbjct: 788 KEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVRDIN 847

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF+ GSCSC DYW
Sbjct: 848 RFHHFRDGSCSCGDYW 863



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 192/413 (46%), Gaps = 49/413 (11%)

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
           S L    + RN +       +     MI + ISP+ ++ S V+ +CA L   N G  VH 
Sbjct: 153 SVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHG 212

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG---YEQNGF 187
           ++   GYDSD     AL++ YAKS   + A  VF  +P   +V+WN++I+G   +E+N  
Sbjct: 213 YLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDL 272

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
           A   + L   M  + V P   T    L ACA +G + LGR +H  ++   ++ +  +   
Sbjct: 273 A---LKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVG 329

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           LI+MY++CG +  AR +FD+M   +VI W ++ISGY   GY  EA+ LF  M   G+  N
Sbjct: 330 LIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFN 389

Query: 308 NVTFVAVLSACA-----------HAGLVQEGHR----VFASMRQEYGLLPGVEH-----H 347
             T   +L + A           H   ++ G++    V  S+   YG    +E       
Sbjct: 390 QTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFE 449

Query: 348 VC----------MVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAVWTAMLGACKMHKN 392
           VC          M+  + + GL  EA K       +D+   KP   +++++  AC     
Sbjct: 450 VCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDI---KPDAFIFSSLFNACANLSA 506

Query: 393 FDLGVEVAEHLLS---VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           ++ G ++  H+L    +     G+   L N+YA  G +D    + N +  +G+
Sbjct: 507 YEQGKQIHVHVLKCGLLSDVFAGN--SLVNMYAKCGSIDDASCIFNEISWRGI 557



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 134/277 (48%), Gaps = 43/277 (15%)

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA---------------- 191
           VN Y+K     VARK+     +  +V+W+++ISGY QNG  +EA                
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 192 ------------------------IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
                                   + L   M   G++P+  +   VL ACA L D + G 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            VH +++  G D +   A +L++MYA+ G    A  +F  + + ++++W A+I+G  +H 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
               A++L  +M ++ V P+  T  + L ACA  GLV+ G ++ +++  +  + P     
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSAL-MKMDMEPDSFVG 327

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           V ++D++ + GLL +A + V D++  K    VW +++
Sbjct: 328 VGLIDMYSKCGLLQDA-RMVFDLMPXKDV-IVWNSII 362



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 41/190 (21%)

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           +N+Y++C     AR++    SE ++++W+A+ISGY  +G G EA+  ++ M   G + N 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 309 VTFVAVLSACA---HAGLVQEGHRV-FASMRQEYGLLP--------------------GV 344
            TF +VL  C+   +  L ++ HRV   +     G+ P                    G+
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 345 EHH---------------VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
           + H                 ++D++ ++G    A     ++   KP    W A++  C +
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEI--PKPDIVSWNAVIAGCVL 266

Query: 390 HKNFDLGVEV 399
           H+  DL +++
Sbjct: 267 HEKNDLALKL 276


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/609 (38%), Positives = 366/609 (60%), Gaps = 42/609 (6%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL---VCDAGF------ITYAQRIF 63
           A+L++      L+ +H  L+         + ++LL+L   V D+ F      + YA  IF
Sbjct: 17  ALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIF 76

Query: 64  FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123
             I +P+ F+FN LI   S     + +  FY +M+ S I P N TF  +IK+   +  + 
Sbjct: 77  SQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVV 136

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
           +G   H  +   G+ +D++V+ +LV+ YA    +  A ++F +MP + VV+W SM++GY 
Sbjct: 137 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYC 196

Query: 184 Q--------------------------NGFAK-----EAIGLFNLMRDFGVNPDSTTCVC 212
           +                          NG+AK     +AI LF LM+  GV  + T  V 
Sbjct: 197 KCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVS 256

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
           V+++CA LG ++ G   HE++V   + VN++L T+L++MY RCG + KA  +F+ + + +
Sbjct: 257 VISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKD 316

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
            ++W+++I G  +HG+  +A+  F +M   G  P ++T  AVLSAC+H GLV +G  ++ 
Sbjct: 317 SLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYE 376

Query: 333 SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKN 392
           +M+++YG+ P +EH+ C+VD+ GRAG L EA  F+   +  KP   +  A+LGACK++KN
Sbjct: 377 NMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILK-MPVKPNAPILGALLGACKIYKN 435

Query: 393 FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVE 452
            ++   V   L+ V+PE+ G+YV+LSNIYA AG+ +++E +R+IM +K +KK  G+S +E
Sbjct: 436 TEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIE 495

Query: 453 VDQKNYLFSMG-DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRY 511
           +D K   FSMG D+ HP   +I +  +E++G+ R  GY   +  A  +++EEE+E ++  
Sbjct: 496 IDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETAIHM 555

Query: 512 HSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKR 571
           HSEKLA+A+G+M+T  G TIRIVKNLR+C DCH+A K IS    RE IVRDR RFHHF+ 
Sbjct: 556 HSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHHFRN 615

Query: 572 GSCSCLDYW 580
           G CSC DYW
Sbjct: 616 GLCSCRDYW 624


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/573 (38%), Positives = 354/573 (61%), Gaps = 7/573 (1%)

Query: 13  AILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
            +LK    L  L +   +HA L+ + +     M   LL+L    G + YA+++F  + S 
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL--GRA 127
           D   +  LI   S+ +   D+LL    M+   + P+ +T ++++K+ + +   ++  GR 
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H      GYDS+++V  A+++ YA+ ++++ A+ +FD M  K+ V+WN++I+GY + G 
Sbjct: 140 LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQ 199

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
             +A  LF+ M    V P   T   VL ACA +G ++ G+WVH  ++  G  +   +  +
Sbjct: 200 GDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNT 259

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L++MYA+ G++  A+++FD +++ +V++W +M++GY  HG G  A++ F  M    + PN
Sbjct: 260 LLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPN 319

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           ++TF+ VL+AC+HAGL+ EG   F  M ++Y + P + H+V MVDL GRAG L+ A +F+
Sbjct: 320 DITFLCVLTACSHAGLLDEGRHYF-DMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFI 378

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
            + +  KP  AVW A+LGAC+MHKN +LG   AE +  ++   PG +V+L NIYALAGR 
Sbjct: 379 SE-MPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRW 437

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           +    VR +M + G+KK    S VE++ + ++F   D +HP   EI+   +++  + +E 
Sbjct: 438 NDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEI 497

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           GYVP+S   +  ++++ERE  L+YHSEKLALAF L+ T PG TIRI KN+R+C DCHSA 
Sbjct: 498 GYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAF 557

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KF+S    REIIVRD  RFHHF  G+CSC DYW
Sbjct: 558 KFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/611 (37%), Positives = 364/611 (59%), Gaps = 38/611 (6%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTK---------------- 45
           +P + A+ A+LKA   L+ L   +Q+HA  +  GYG S   +                  
Sbjct: 89  RPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKT 148

Query: 46  -----LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS 100
                L+++    G +  ++ +F      D   +NT+I   S+++  +++L F+R M++ 
Sbjct: 149 FTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLE 208

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL----HVQAALVNFYAKSNN 156
            +     T ++V+ +C+HL  L++G+ +H +V     ++DL     V +ALV+ Y     
Sbjct: 209 GVELDGVTIASVLPACSHLERLDVGKEIHAYVL---RNNDLIENSFVGSALVDMYCNCRQ 265

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLA 215
           V+  R+VFD +  + +  WN+MISGY +NG  ++A+ LF  +++  G+ P++TT   V+ 
Sbjct: 266 VESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMP 325

Query: 216 ACAQ-LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
           AC   L  I  G+ +H + +   L  ++ + ++L++MYA+CG ++ +R +F+ M   NVI
Sbjct: 326 ACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVI 385

Query: 275 AWTAMISGYGMHGYGTEAVELFHRM-----RAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
            W  +I   GMHG G EA+ELF  M     R    +PN VTF+ V +AC+H+GL+ EG  
Sbjct: 386 TWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLN 445

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
           +F  M+ ++G+ P  +H+ C+VDL GRAG L EAY+ V  +  E      W+++LGAC++
Sbjct: 446 LFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRI 505

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           H+N +LG   A++LL +EP    HYV+LSNIY+ AG  ++   VR  M Q G+KK  G S
Sbjct: 506 HQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCS 565

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
            +E   + + F  GD SHP + +++ +L+ L  + R+ GYVP++   +H ++E+E+E  L
Sbjct: 566 WIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLL 625

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
             HSEKLA+AFG++ T PG TIR+ KNLR+C DCH+A KFIS    REIIVRD  RFHHF
Sbjct: 626 CGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHF 685

Query: 570 KRGSCSCLDYW 580
           K G+CSC DYW
Sbjct: 686 KEGTCSCGDYW 696



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 170/350 (48%), Gaps = 31/350 (8%)

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY-DSD 140
           +++N   +++  Y  M VS   P N+ F AV+K+ + L  L  G  +H      GY  S 
Sbjct: 68  TRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSS 127

Query: 141 LHVQAALVNFYAK---------SNN-----------VDVARKVFDRMPDKSVVAWNSMIS 180
           + V   LVN Y K         +NN           VD ++ +F+   D+ +V+WN+MIS
Sbjct: 128 VTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMIS 187

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV-GQGLD 239
            + Q+    EA+  F LM   GV  D  T   VL AC+ L  +D+G+ +H +++    L 
Sbjct: 188 SFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLI 247

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            N  + ++L++MY  C  V   R +FD +    +  W AMISGY  +G   +A+ LF  M
Sbjct: 248 ENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEM 307

Query: 300 -RAHGVRPNNVTFVAVLSACAHA-GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
            +  G+ PN  T  +V+ AC H+   + +G  + A   +   L   +     +VD++ + 
Sbjct: 308 IKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNM-LASDITVGSALVDMYAKC 366

Query: 358 GLLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLS 405
           G LN      + V  E P   V  W  ++ AC MH   +  +E+ +++++
Sbjct: 367 GCLN----LSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVA 412



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 23/238 (9%)

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
           P +S  +W   +    ++   +EAI  +  M   G  PD+     VL A + L D+  G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 228 WVHEFIVGQGL-DVNVVLATSLINMYARCGN--------------------VSKAREIFD 266
            +H   V  G    +V +A +L+NMY +CG                     V  ++ +F+
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
              + ++++W  MIS +      +EA+  F  M   GV  + VT  +VL AC+H   +  
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           G  + A + +   L+        +VD++     +    +    ++G +    +W AM+
Sbjct: 233 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRR--IELWNAMI 288


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/579 (39%), Positives = 344/579 (59%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P S  +   L A  RL  L   + V      AGY     + + LL L    G +  A +
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  D   ++T++     A    D++  YRRM    +         VI++C     
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           + +G +VH H+   G   D+    +LV+ YAK+  +DVA +VF  M  ++ V+W++MISG
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + QNG + EA+ LF  M+  G+ PDS   V  L AC+ +G + LGR VH FIV +  D N
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFN 343

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            +L T+ I+MY++CG+++ A+ +F+M+S+ ++I W AMI+  G HG G +A+ LF  M  
Sbjct: 344 CILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+RP++ TF ++LSA +H+GLV+EG   F  M   + + P  +H+VC+VDL  R+GL+ 
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA   +  +  E P  A+W A+L  C  +K  +LG  +A+++L ++P++ G   ++SN+Y
Sbjct: 464 EASDLLTSMKAE-PTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLY 522

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A   + D+V  VR +M   G KK  G S++E+    ++F M D+SHP   EI   + +L 
Sbjct: 523 AATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLD 582

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              R+ GY+P +E   H+LEEE +E  L YHSE+LA+AFGL+ T PG  + I+KNLR+C 
Sbjct: 583 LEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCG 642

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH AIK+IS   +REI+VRD  RFHHFK G CSC DYW
Sbjct: 643 DCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 193/371 (52%), Gaps = 9/371 (2%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           + L ++HA LIV+    S ++++ L +    AG +  A+       +  S      II  
Sbjct: 25  RTLARLHALLIVSSSA-SHTLISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAA 83

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
                S  S L   R +     P + TF+  + +CA L  L  G +V    F +GY  D+
Sbjct: 84  HSRRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V ++L++ YA+   +  A KVF RMP +  V W++M++G+   G   +AI ++  MR+ 
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           GV  D    + V+ AC    ++ +G  VH  ++  G+ ++VV ATSL++MYA+ G +  A
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVA 263

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
             +F +M   N ++W+AMISG+  +G   EA+ LF  M+A G++P++   V+ L AC++ 
Sbjct: 264 CRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNI 323

Query: 322 GLVQEGHRV--FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           G ++ G  V  F   R ++  + G       +D++ + G L  A + + ++I ++    +
Sbjct: 324 GFLKLGRSVHGFIVRRFDFNCILG----TAAIDMYSKCGSLASA-QMLFNMISDRDL-IL 377

Query: 380 WTAMLGACKMH 390
           W AM+  C  H
Sbjct: 378 WNAMIACCGAH 388


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/572 (39%), Positives = 345/572 (60%), Gaps = 5/572 (0%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
           ++L+    +  +  +HA LI  G+ +   M+ +LL        I YA RIF    +P+ +
Sbjct: 37  SLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVY 96

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
           L+  LI     +    D++  Y RM+  +I P NY  ++++K+C     L  GR VH   
Sbjct: 97  LYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRA 156

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD----KSVVAWNSMISGYEQNGFA 188
              G  S+  V+  ++  Y K   +  AR+VF+ MP+    K  V W +MI G+ +N   
Sbjct: 157 LKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEM 216

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
             A+  F  M+   V P+  T VCVL+AC+QLG +++GRWVH ++    +++N+ +  +L
Sbjct: 217 NRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNAL 276

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           INMY+RCG++ +A+ +FD M + +VI +  MISG  M+G   +A+ELF  M    +RP N
Sbjct: 277 INMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTN 336

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           VTFV VL+AC+H GLV  G ++F SM ++YG+ P +EH+ CMVDL GR G L EAY  ++
Sbjct: 337 VTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIR 396

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
             +   P   +   +L ACKMHKN +LG +VA+ L      + G YV+LS++YA +G+  
Sbjct: 397 -TMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWK 455

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
               VR  M + G++K  G S++EV+ + + F +GD  HP    IY+ L+EL    R  G
Sbjct: 456 EAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEG 515

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           Y PE E  + ++E+ E+E++L  HSE+LA+ +GL+ T P   IR++KNLR+C DCHSAIK
Sbjct: 516 YHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIK 575

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            I+  T R+++VRDR RFH+F+ G+CSC DYW
Sbjct: 576 LIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/577 (39%), Positives = 353/577 (61%), Gaps = 10/577 (1%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCIPSPD 70
           ++L+    ++ L ++HAH+++ GY  + S+  KLL+   V  +G + YAQ +F  I +P 
Sbjct: 28  SLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQ 87

Query: 71  SFLFNTLI--IRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRA 127
           +  +N++I     S +     +++FY  M+  S+  P  YTFS ++K+C         R 
Sbjct: 88  TPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCRE 147

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           VH  +   GYD D+ +   L+  YA +  ++ A KVF+ MP + +V+WNSMIS Y Q G 
Sbjct: 148 VHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGL 207

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            +EA+ +++ MR   V  D  T V +L++CA +G + +G  +H F   + L  N+ +  +
Sbjct: 208 HEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNA 267

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           LI+MYA+CG+++ A  IF+ M + +V  W +MI GYG+HG G EA+  F  M   GVRPN
Sbjct: 268 LIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPN 327

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           ++TF+ +L  C+H GLV+EG + F  M  E+ L PG++H+ CMVDLFGRAG L EA + +
Sbjct: 328 SITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVI 387

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           +    +   P +W  +LG+CK+H+N ++G     +L+ +     G  V+LS IYA A  +
Sbjct: 388 RSSPSQHD-PVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDL 446

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
             V  +R ++  +G+K   G+S +EV  + + F + DKSHP++ EIY+ L+E++ R    
Sbjct: 447 QGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLV 506

Query: 488 GYVPESESAMHELEEEEREY----SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
           GY  E  S +   E   +EY    S  YHSEKLA+A+GL RT  G ++ IVKNLR+C DC
Sbjct: 507 GYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDC 566

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           H+  KF+S+A +REIIVRDR+RFHHFK G CSC ++W
Sbjct: 567 HNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/609 (39%), Positives = 357/609 (58%), Gaps = 50/609 (8%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLL--SLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           ++ L+Q+HA +I     R      +LL  S V D   + YA++IF  +  P+ F +NTLI
Sbjct: 24  MQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLI 83

Query: 79  IRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCAHLSILNLGRAVH-------- 129
              S++N   D+LL +  M+   ++ P+ +TF +V K+C     L  GR VH        
Sbjct: 84  RALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGL 143

Query: 130 ----------------C------------HVFVSG----------YDSDLHVQAALVNFY 151
                           C             VFV G           D D+ +   +++ Y
Sbjct: 144 DSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGY 203

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
            +   ++VAR +FD MP +SVV+WN MI+GY Q+G  KEA+ +F  M+   V P+  T V
Sbjct: 204 VRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLV 263

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
            VL A ++LG ++LG+WVH + V   + V+ VL ++LI+MYA+CG++ KA ++F+ + + 
Sbjct: 264 SVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKR 323

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           NV+ W+ +I+G  MHG   + ++ F  M   GV P++VT++ +LSAC+HAGLV EG   F
Sbjct: 324 NVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFF 383

Query: 332 ASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHK 391
             M +  GL P +EH+ CMVDL GRAGLL E+ + + + +  KP   +W A+LGACKMH 
Sbjct: 384 DHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILN-MPIKPDDVIWKALLGACKMHG 442

Query: 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTV 451
           N ++G  VAEHL+ + P + G YV LSNIYA  G  + V  VR +M +  ++K  G S +
Sbjct: 443 NVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWI 502

Query: 452 EVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRY 511
           E+D   + F + D SHP + +I+  L E+       GY P +   +  ++EE++E SL Y
Sbjct: 503 ELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNY 562

Query: 512 HSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKR 571
           HSEK+A+AFGL+ T P   +RI KNLR+C DCHS+IK IS    R+IIVRDR RFHHF  
Sbjct: 563 HSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVN 622

Query: 572 GSCSCLDYW 580
           GSCSC+DYW
Sbjct: 623 GSCSCMDYW 631



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 115/278 (41%), Gaps = 41/278 (14%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           M    P+     ++L A  RL  L+    VH + +    G    + + L+ +    G I 
Sbjct: 252 MAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIE 311

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A ++F  +P  +   ++T+I   +    + D+L  +  M  + + PS+ T+  ++ +C+
Sbjct: 312 KALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACS 371

Query: 118 HLSILNLGRAVHCH-VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
           H  ++N GR    H V VSG +  +     +V+   ++  ++ + ++   MP        
Sbjct: 372 HAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMP-------- 423

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
                                     + PD      +L AC   G++++G+ V E ++  
Sbjct: 424 --------------------------IKPDDVIWKALLGACKMHGNVEMGKRVAEHLMEL 457

Query: 237 GL-DVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
              D    +A S  N+YA  GN     ++  MM E++V
Sbjct: 458 APHDSGSYVALS--NIYASLGNWEGVAKVRLMMKEMDV 493


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/577 (39%), Positives = 353/577 (61%), Gaps = 10/577 (1%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCIPSPD 70
           ++L+    ++ L ++HAH+++ GY  + S+  KLL+   V  +G + YAQ +F  I +P 
Sbjct: 10  SLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQ 69

Query: 71  SFLFNTLI--IRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRA 127
           +  +N++I     S +     +++FY  M+  S+  P  YTFS ++K+C         R 
Sbjct: 70  TPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCRE 129

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           VH  +   GYD D+ +   L+  YA +  ++ A KVF+ MP + +V+WNSMIS Y Q G 
Sbjct: 130 VHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGL 189

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            +EA+ +++ MR   V  D  T V +L++CA +G + +G  +H F   + L  N+ +  +
Sbjct: 190 HEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNA 249

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           LI+MYA+CG+++ A  IF+ M + +V  W +MI GYG+HG G EA+  F  M   GVRPN
Sbjct: 250 LIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPN 309

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           ++TF+ +L  C+H GLV+EG + F  M  E+ L PG++H+ CMVDLFGRAG L EA + +
Sbjct: 310 SITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVI 369

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           +    +   P +W  +LG+CK+H+N ++G     +L+ +     G  V+LS IYA A  +
Sbjct: 370 RSSPSQHD-PVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDL 428

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
             V  +R ++  +G+K   G+S +EV  + + F + DKSHP++ EIY+ L+E++ R    
Sbjct: 429 QGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLV 488

Query: 488 GYVPESESAMHELEEEEREY----SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
           GY  E  S +   E   +EY    S  YHSEKLA+A+GL RT  G ++ IVKNLR+C DC
Sbjct: 489 GYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDC 548

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           H+  KF+S+A +REIIVRDR+RFHHFK G CSC ++W
Sbjct: 549 HNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/633 (37%), Positives = 364/633 (57%), Gaps = 58/633 (9%)

Query: 5   QPHSPAYEAIL-----KAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--IT 57
           QP++ +Y   L     KA   ++ L+QVHA L+  G     ++ T++L L   + F  I 
Sbjct: 7   QPNTASYYPRLDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIG 66

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKA-NFSTDSLLFYRRMIV-SNISPSNYTFSAVIKS 115
           YA  +F  +P  + F +NT+I   ++  +   D+LL + +M+  + + P+ +TF +V+K+
Sbjct: 67  YALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKA 126

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL---------------------------- 147
           CA ++ L  G+ VH  +   G   D  V   L                            
Sbjct: 127 CAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVR 186

Query: 148 -------------------VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
                              V+ YA+  N+  AR++FDRM  +SVV+WN MISGY QNGF 
Sbjct: 187 NLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFY 246

Query: 189 KEAIGLFNLMRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
           KEAI +F+ M   G V P+  T V VL A ++LG ++LG+WVH +     + ++ VL ++
Sbjct: 247 KEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSA 306

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L++MYA+CG++ KA ++F+ + + NVI W A+I G  MHG   +      RM   G+ P+
Sbjct: 307 LVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPS 366

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           +VT++A+LSAC+HAGLV EG   F  M    GL P +EH+ CMVDL GRAG L EA + +
Sbjct: 367 DVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELI 426

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
            + +  KP   +W A+LGA KMHKN  +G+  AE L+ + P + G YV LSN+YA +G  
Sbjct: 427 LN-MPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNW 485

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           D V  VR +M    ++K  G S +E+D   + F + D SH    +I+  L+E+  +    
Sbjct: 486 DGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLE 545

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           G++P++   + +++E+ +E  L YHSEK+A+AFGL+ T P   + IVKNLR+C DCHS++
Sbjct: 546 GHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSM 605

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           K IS    R+I++RDR RFHHF+ GSCSC+DYW
Sbjct: 606 KLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/579 (39%), Positives = 343/579 (59%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P S  +   L A  RL  L   + V      AGY     + + LL L    G +  A +
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  D   ++T++     A    D++  YRRM    +         VI++C     
Sbjct: 165 VFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           + +G +VH H+   G   D+    +LV+ YAK+  +DVA +VF  M  ++ V+W++MISG
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + QNG + EA+ LF  M+  G+ PDS   V  L AC+ +G + LGR VH FIV +  D N
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFN 343

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            +L T+ I+MY++CG+++ A+ +F+M+S+ ++I W AMI+  G HG G +A+ LF  M  
Sbjct: 344 CILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+RP++ TF ++LSA +H+GLV+EG   F  M   + + P  +H+VC+VDL  R+GL+ 
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA   +  +  E P  A+W A+L  C  +K  +LG  +A+++L ++P++ G   ++SN+Y
Sbjct: 464 EASDLLTSMKAE-PTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLY 522

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A   + D+V  VR +M   G KK  G S++E+    + F M D+SHP   EI   + +L 
Sbjct: 523 AATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLD 582

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              R+ GY+P +E   H+LEEE +E  L YHSEKLA+AFGL+ T PG  + I+KNLR+C 
Sbjct: 583 LEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCG 642

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH AIK+IS   +REI+VRD  RFHHFK G CSC DYW
Sbjct: 643 DCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 194/371 (52%), Gaps = 9/371 (2%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           + L ++HA LIV+    + ++++ L +    AG +  A+       +  S      II  
Sbjct: 25  RTLARLHALLIVSSSA-THTLISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAA 83

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
                S  S L   R +     P + TF+  + +CA L  L  G +V    F +GY  D+
Sbjct: 84  HSRRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V ++L++ YA+   +  A KVFDRMP +  V W++M++G+   G   +AI ++  MR+ 
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           GV  D    + V+ AC    ++ +G  VH  ++  G+ ++VV ATSL++MYA+ G +  A
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVA 263

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
             +F +M   N ++W+AMISG+  +G   EA+ LF  M+A G++P++   V+ L AC++ 
Sbjct: 264 CRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNI 323

Query: 322 GLVQEGHRV--FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           G ++ G  V  F   R ++  + G       +D++ + G L  A + + ++I ++    +
Sbjct: 324 GFLKLGRSVHGFIVRRFDFNCILG----TAAIDMYSKCGSLASA-QMLFNMISDRDL-IL 377

Query: 380 WTAMLGACKMH 390
           W AM+  C  H
Sbjct: 378 WNAMIACCGAH 388


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/582 (40%), Positives = 342/582 (58%), Gaps = 11/582 (1%)

Query: 6   PHSPAYEAILKAGPRLK-PL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           P    +   LK+  RL  PL   +Q+HA  +      +  +LT LL+L    G +  AQR
Sbjct: 115 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 174

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P P +  +  LI     A    +++   R    + + P ++T   V+ +CA ++ 
Sbjct: 175 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 234

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G  V       G    + V  A V+ Y K   +  AR+VFD+M DK  VAW +M+ G
Sbjct: 235 LATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGG 294

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y  NG  +EA+ LF  M+  GV PD       L+AC +LG +DLGR     +       N
Sbjct: 295 YASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 354

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            VL T+LI+MYA+CG+ ++A  +F  M + ++I W AMI G GM G+   A  L  +M  
Sbjct: 355 PVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEK 414

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV+ N+ TF+ +L +C H GL+Q+G R F +M + Y + P +EH+ C+VDL  RAGLL 
Sbjct: 415 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQ 474

Query: 362 EAYKFVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           EA++ + D+    P PA   +  A+LG CK+H+N +L   V   L+ +EP N G+YVMLS
Sbjct: 475 EAHQLIDDM----PMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLS 530

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           NIY+  GR +    +R  M +KG++K    S VE + K + F +GDKSHP +++IY+ LD
Sbjct: 531 NIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLD 590

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           EL    +  GY P +E  M ++E+EE+E++L +HSEKLA+AF L+ T PG TIR+ KNLR
Sbjct: 591 ELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLR 650

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+AIK IS  T+REIIVRD  RFH F+ GSCSC DYW
Sbjct: 651 VCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/579 (39%), Positives = 344/579 (59%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P S  +   L A  RL  L   + V      AGY     + + LL L    G +  A +
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  D   ++T++     A    D++  YRRM    +         VI++C     
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           + +G +VH H+   G   D+    +LV+ YAK+  +DVA +VF  M  ++ V+W++MISG
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + QNG + EA+ LF  M+  G+ PDS   V  L AC+ +G + LGR VH FIV +  D N
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFN 343

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            +L T+ I+MY++CG+++ A+ +F+M+S+ ++I W AMI+  G HG G +A+ LF  M  
Sbjct: 344 CILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+RP++ TF ++LSA +H+GLV+EG   F  M   + + P  +H+VC+VDL  R+GL+ 
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA   +  +  E P  A+W A+L  C  +K  +LG  +A+++L ++P++ G   ++SN+Y
Sbjct: 464 EASDLLTSMKAE-PTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLY 522

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A   + D+V  VR +M   G KK  G S++E+    ++F M D+SHP   EI   + +L 
Sbjct: 523 AATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLD 582

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              R+ GY+P +E   H+LEEE +E  L YHSE+LA+AFGL+ T PG  + I+KNLR+C 
Sbjct: 583 LEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCG 642

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH AIK+IS   +REI+VRD  RFHHFK G CSC DYW
Sbjct: 643 DCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 193/371 (52%), Gaps = 9/371 (2%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           + L ++HA LIV+    S ++++ L +    AG +  A+       +  S      II  
Sbjct: 25  RTLARLHALLIVSSSA-SHTLISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAA 83

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
                S  S L   R +     P + TF+  + +CA L  L  G +V    F +GY  D+
Sbjct: 84  HSRRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V ++L++ YA+   +  A KVF RMP +  V W++M++G+   G   +AI ++  MR+ 
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           GV  D    + V+ AC    ++ +G  VH  ++  G+ ++VV ATSL++MYA+ G +  A
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVA 263

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
             +F +M   N ++W+AMISG+  +G   EA+ LF  M+A G++P++   V+ L AC++ 
Sbjct: 264 CRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNI 323

Query: 322 GLVQEGHRV--FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           G ++ G  V  F   R ++  + G       +D++ + G L  A + + ++I ++    +
Sbjct: 324 GFLKLGRSVHGFIVRRFDFNCILG----TAAIDMYSKCGSLASA-QMLFNMISDRDL-IL 377

Query: 380 WTAMLGACKMH 390
           W AM+  C  H
Sbjct: 378 WNAMIACCGAH 388


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/572 (40%), Positives = 341/572 (59%), Gaps = 14/572 (2%)

Query: 19  PRLKPLQQVHAH-LIVAGYGRSRSMLTK-----LLSLVCDAGFITYAQRIFFCI-PSPDS 71
           P +   +Q+HA  L  AG   S  +L K     L SL      + YA  +  C+ P PD 
Sbjct: 29  PSVAAAKQIHARALRAAGVPLSHPLLAKHLLFHLASLRAGPPPLLYAVTVLSCLLPDPDP 88

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           F  NT++   + +     +L  +RR +     P  +T+  ++++C  L  L  G ++H  
Sbjct: 89  FSLNTVLRIAASSAHPRIALALHRRRLAP---PDTHTYPPLLQACTRLLALREGESLHAE 145

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNSMISGYEQNGFAK 189
              +G  + + V+ +LV+ Y      + A +VFD +P  ++++V+WNS+++G+  NG   
Sbjct: 146 AAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPN 205

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           E + +F    +  + PD  T V VL ACA++G + LGR VH F    GL  N  +  +LI
Sbjct: 206 EVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALI 265

Query: 250 NMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           ++YA+CG V  A ++F+ M     V++WT++I G   +G+G +A+ELF  M    + P +
Sbjct: 266 DLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTD 325

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           +T V VL AC+H GLV +G R F  M+ +YG+ PG+EH  CMVDL GRAG + EA+ ++ 
Sbjct: 326 ITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYIT 385

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
            +  E P   VW  +LGAC MHK  +LG      L+ ++P + G YV+LSN+YA  GR  
Sbjct: 386 TMPVE-PNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWA 444

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
              V+R  M   G++K+ G+S VE+    Y F MGD+SHP +++IYQ L E+  R R  G
Sbjct: 445 DAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLRCQG 504

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           YVP + + + ++EEEE+E +L YHSE+LA+AF L+++ PG  IRIVKNLRMC DCH  IK
Sbjct: 505 YVPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGSPIRIVKNLRMCGDCHLVIK 564

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            IS   +REIIVRDR RFHHFK G CSC DYW
Sbjct: 565 LISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/587 (39%), Positives = 356/587 (60%), Gaps = 13/587 (2%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P   ++   +KA   L  +   +Q H    V GY     + + L+ +    G +  A+++
Sbjct: 74  PTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKV 133

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTF------SAVIKSC 116
           F  IP  +   + ++I        + D++  ++ +++         F       +VI +C
Sbjct: 134 FDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISAC 193

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN--VDVARKVFDRMPDKSVVA 174
           + ++   L  ++H  V   G+D  + V   L++ YAK     V VARK+FD++ DK  V+
Sbjct: 194 SRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS 253

Query: 175 WNSMISGYEQNGFAKEAIGLFN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           +NS++S Y Q+G + EA  +F  L+++  V  +  T   VL A +  G + +G+ +H+ +
Sbjct: 254 YNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQV 313

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  GL+ +V++ TS+I+MY +CG V  AR  FD M   NV +WTAMI+GYGMHG+  +A+
Sbjct: 314 IRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKAL 373

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           ELF  M   GVRPN +TFV+VL+AC+HAGL   G   F +M+  +G+ PG+EH+ CMVDL
Sbjct: 374 ELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDL 433

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GRAG L +AY  ++ +  E P   +W+++L AC++HKN +L       L  ++P N G+
Sbjct: 434 LGRAGFLQKAYDLIQKMKME-PDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGY 492

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           Y++LS+IYA +GR   VE VR  M  +GL K  G+S +E++ + ++F +GD+ HP   +I
Sbjct: 493 YMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKI 552

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           Y++L EL  +  EAGYV  + S  H+++EEE+E +LR HSEKLA+AFG+M T PG T+ +
Sbjct: 553 YEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNV 612

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           VKNLR+C DCH+ IK IS   +RE +VRD  RFHHFK G CSC DYW
Sbjct: 613 VKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 179/337 (53%), Gaps = 18/337 (5%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           +   D F +N++I   +++  S ++L  +  M   ++ P+  +F   IK+C+ L  +  G
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSG 95

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           +  H   FV GY SD+ V +AL+  Y+    ++ ARKVFD +P +++V+W SMI GY+ N
Sbjct: 96  KQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLN 155

Query: 186 GFAKEAIGLFNLM------RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           G A +A+ LF  +       D  +  DS   V V++AC+++    L   +H F++ +G D
Sbjct: 156 GNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFD 215

Query: 240 VNVVLATSLINMYARCGN--VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
             V +  +L++ YA+ G   V+ AR+IFD + + + +++ +++S Y   G   EA ++F 
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFR 275

Query: 298 RM-RAHGVRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGVEHHVCMVDL 353
           R+ +   V  N +T   VL A +H+G ++ G   H     M  E  ++ G      ++D+
Sbjct: 276 RLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTS----IIDM 331

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           + + G + E  +   D +  K   + WTAM+    MH
Sbjct: 332 YCKCGRV-ETARLAFDRMKNKNVRS-WTAMIAGYGMH 366



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 110/206 (53%), Gaps = 14/206 (6%)

Query: 163 VFDRMPDKS-VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           +F+R  DK+ V +WNS+I+   ++G + EA+  F+ MR   + P  ++  C + AC+ L 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLL 90

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           DI  G+  H+     G   ++ ++++LI MY+ CG +  AR++FD + + N+++WT+MI 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTF------VAVLSAC---AHAGLVQEGHRVFA 332
           GY ++G   +AV LF  +       +   F      V+V+SAC   A  GL +  H    
Sbjct: 151 GYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIH---- 206

Query: 333 SMRQEYGLLPGVEHHVCMVDLFGRAG 358
           S   + G   GV     ++D + + G
Sbjct: 207 SFVIKRGFDRGVSVGNTLLDAYAKGG 232


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/582 (40%), Positives = 342/582 (58%), Gaps = 11/582 (1%)

Query: 6   PHSPAYEAILKAGPRLK-PL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           P    +   LK+  RL  PL   +Q+HA  +      +  +LT LL+L    G +  AQR
Sbjct: 68  PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 127

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P P +  +  LI     A    +++   R    + + P ++T   V+ +CA ++ 
Sbjct: 128 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 187

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G  V       G    + V  A V+ Y K   +  AR+VFD+M DK  VAW +M+ G
Sbjct: 188 LATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGG 247

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y  NG  +EA+ LF  M+  GV PD       L+AC +LG +DLGR     +       N
Sbjct: 248 YASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 307

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            VL T+LI+MYA+CG+ ++A  +F  M + ++I W AMI G GM G+   A  L  +M  
Sbjct: 308 PVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEK 367

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV+ N+ TF+ +L +C H GL+Q+G R F +M + Y + P +EH+ C+VDL  RAGLL 
Sbjct: 368 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQ 427

Query: 362 EAYKFVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           EA++ + D+    P PA   +  A+LG CK+H+N +L   V   L+ +EP N G+YVMLS
Sbjct: 428 EAHQLIDDM----PMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLS 483

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           NIY+  GR +    +R  M +KG++K    S VE + K + F +GDKSHP +++IY+ LD
Sbjct: 484 NIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLD 543

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           EL    +  GY P +E  M ++E+EE+E++L +HSEKLA+AF L+ T PG TIR+ KNLR
Sbjct: 544 ELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLR 603

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+AIK IS  T+REIIVRD  RFH F+ GSCSC DYW
Sbjct: 604 VCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/512 (41%), Positives = 325/512 (63%), Gaps = 1/512 (0%)

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
           PD   +N L+   ++      +L F++RM    + P+  T S  + +C  +  L LG+ +
Sbjct: 462 PDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEI 521

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H +V  +  +    V +AL++ Y+  ++++VA  VF  +  + VV WNS+IS   Q+G +
Sbjct: 522 HGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRS 581

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
             A+ L   M    V  ++ T V  L AC++L  +  G+ +H+FI+  GLD    +  SL
Sbjct: 582 VNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSL 641

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           I+MY RCG++ K+R IFD+M + ++++W  MIS YGMHG+G +AV LF + R  G++PN+
Sbjct: 642 IDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNH 701

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           +TF  +LSAC+H+GL++EG + F  M+ EY + P VE + CMVDL  RAG  NE  +F++
Sbjct: 702 ITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIE 761

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
            +  E P  AVW ++LGAC++H N DL    A +L  +EP++ G+YV+++NIY+ AGR +
Sbjct: 762 KMPFE-PNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWE 820

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
               +R +M ++G+ K  G S +EV +K + F +GD SHP   +I   ++ L    +E G
Sbjct: 821 DAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIG 880

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           YVP++   + +++E+E+E+SL  HSEK+ALAFGL+ T+ G  +RI+KNLR+C DCHSA K
Sbjct: 881 YVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATK 940

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           FIS    R+II+RD  RFHHF  G CSC DYW
Sbjct: 941 FISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 200/412 (48%), Gaps = 61/412 (14%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           +KP  QV  + I++GY +S          +   G   +          P+   +  LI  
Sbjct: 287 VKP-DQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDF---------KPNVVSWTALIAG 336

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH-VFVSGYDS 139
           + +  +  ++L  +R+M++  + P++ T ++ + +C +LS+L  GR +H + + V   DS
Sbjct: 337 SEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDS 396

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS---------------------- 177
           DL V  +LV++YAK  +V+VAR+ F  +    +V+WN+                      
Sbjct: 397 DLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMK 456

Query: 178 -------------MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
                        +++G+ Q G  K A+  F  M   G++P++TT    LAAC Q+ ++ 
Sbjct: 457 FQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLK 516

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
           LG+ +H +++   ++++  + ++LI+MY+ C ++  A  +F  +S  +V+ W ++IS   
Sbjct: 517 LGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACA 576

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
             G    A++L   M    V  N VT V+ L AC+    +++G  +      ++ +  G+
Sbjct: 577 QSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEI-----HQFIIRCGL 631

Query: 345 EHHVC------MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           +   C      ++D++GR G + ++ + + D++ ++   + W  M+    MH
Sbjct: 632 D--TCNFILNSLIDMYGRCGSIQKSRR-IFDLMPQRDLVS-WNVMISVYGMH 679



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 159/328 (48%), Gaps = 43/328 (13%)

Query: 11  YEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y +IL+   +L  L+   QVHA L+V G      + ++LL + C  G +  A+R+F  + 
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             + F +  ++          +++  +  M+   + P ++ F  V K+C+ L    +G+ 
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           V+ ++   G++ +  V+ ++++ + K   +D+AR+ F+ +  K V  WN M+SGY   G 
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            K+A+   + M+  GV PD  T                  W                  +
Sbjct: 272 FKKALKCISDMKLSGVKPDQVT------------------W-----------------NA 296

Query: 248 LINMYARCGNVSKAREIFDMMSEL-----NVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           +I+ YA+ G   +A + F  M  L     NV++WTA+I+G   +GY  EA+ +F +M   
Sbjct: 297 IISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRV 330
           GV+PN++T  + +SAC +  L++ G  +
Sbjct: 357 GVKPNSITIASAVSACTNLSLLRHGREI 384



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 160/321 (49%), Gaps = 2/321 (0%)

Query: 89  DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
           ++ +    M ++N       ++++++ C  L  L LG  VH  + V+G D    + + L+
Sbjct: 72  NAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLL 131

Query: 149 NFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
             Y ++  V+ AR++FD+M +++V +W +++  Y   G  +E I LF LM + GV PD  
Sbjct: 132 EVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHF 191

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
               V  AC++L +  +G+ V+++++  G + N  +  S+++M+ +CG +  AR  F+ +
Sbjct: 192 VFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEI 251

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
              +V  W  M+SGY   G   +A++    M+  GV+P+ VT+ A++S  A +G  +E  
Sbjct: 252 EFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEAS 311

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI--GEKPAPAVWTAMLGA 386
           + F  M       P V     ++    + G   EA    + ++  G KP      + + A
Sbjct: 312 KYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSA 371

Query: 387 CKMHKNFDLGVEVAEHLLSVE 407
           C        G E+  + + VE
Sbjct: 372 CTNLSLLRHGREIHGYCIKVE 392



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 143/286 (50%), Gaps = 5/286 (1%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P++      L A  +++ L+   ++H +++      S  + + L+S+      +  A  +
Sbjct: 497 PNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSV 556

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  + + D  ++N++I   +++  S ++L   R M +SN+  +  T  + + +C+ L+ L
Sbjct: 557 FSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAAL 616

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+ +H  +   G D+   +  +L++ Y +  ++  +R++FD MP + +V+WN MIS Y
Sbjct: 617 RQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVY 676

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVN 241
             +GF  +A+ LF   R  G+ P+  T   +L+AC+  G I+ G ++         +D  
Sbjct: 677 GMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPA 736

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
           V     ++++ +R G  ++  E  + M  E N   W +++    +H
Sbjct: 737 VEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIH 782


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/515 (43%), Positives = 316/515 (61%), Gaps = 32/515 (6%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY----- 151
           M + ++ P  +T S V+K+C  LS +  G+ +H      G+ S+L +Q  ++N Y     
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 152 --------------------------AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
                                     AK  ++D A   F RMP+K+V +W SMISG+ Q 
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G   EAI LF  + D  V P+  T V VLAACA LGD+DLGR VHE+    G   NV + 
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVC 180

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
            +LI+MY +CG +  AR +F  M E  V++W+AMI+G  MHG   EA+ LF  M   GV+
Sbjct: 181 NTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVK 240

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           PN VTF+ +L AC+H GL+ EG R FASM  +YG++P +EH+ C+VDLF RAGLL EA++
Sbjct: 241 PNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHE 300

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
           F+   +  KP   VW A+LG CK+HKN DL  E  +HL  ++P N G+YV++SNIYA A 
Sbjct: 301 FILS-MPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAE 359

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
           R +    VR +M  +G+KK  G+S++ V+   + F  GD++HP   +I +  D+L+ + +
Sbjct: 360 RWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMK 419

Query: 486 EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
             GY P++   + ++EE+E+E  L  HSEKLA+ FGLM T  G  IRI+KNLR+C DCH+
Sbjct: 420 RRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHA 479

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           A+K IS   +REIIVRDR RFH F+ G CSC D+W
Sbjct: 480 ALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 42/320 (13%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P +     +LKA  +L  +   + +H      G+G +  +   +L+L    G +  A  +
Sbjct: 8   PDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLL 67

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS------------------- 103
           F  +P  D+  +N +I + +K      +  F+ RM   N+                    
Sbjct: 68  FEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAI 127

Query: 104 ------------PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
                       P+  T  +V+ +CA L  L+LGR VH +   SG+  ++HV   L++ Y
Sbjct: 128 DLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMY 187

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
            K   ++ AR+VF  M +++VV+W++MI+G   +G A+EA+ LF+ M   GV P+  T +
Sbjct: 188 VKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFI 247

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS----LINMYARCGNVSKARE-IFD 266
            +L AC+ +G ID GR    F      D  V+        ++++++R G + +A E I  
Sbjct: 248 GLLHACSHMGLIDEGR---RFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILS 304

Query: 267 MMSELNVIAWTAMISGYGMH 286
           M  + N + W A++ G  +H
Sbjct: 305 MPIKPNGVVWGALLGGCKVH 324



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/196 (19%), Positives = 91/196 (46%), Gaps = 8/196 (4%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+     ++L A   L  L   + VH +   +G+ R+  +   L+ +    G +  A+R
Sbjct: 139 RPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARR 198

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F+ +       ++ +I   +    + ++L  +  MI   + P+  TF  ++ +C+H+ +
Sbjct: 199 VFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGL 258

Query: 122 LNLGRAVHCHVFVS-GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK-SVVAWNSMI 179
           ++ GR     +    G    +     +V+ ++++  ++ A +    MP K + V W +++
Sbjct: 259 IDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALL 318

Query: 180 SG---YEQNGFAKEAI 192
            G   ++    A+EAI
Sbjct: 319 GGCKVHKNIDLAEEAI 334


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/579 (37%), Positives = 360/579 (62%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    Y  +LK   +L  L++   VH H++ + +     +   LL +    G +  A+R
Sbjct: 71  EPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARR 130

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  D   + ++I   ++ + ++D+LL + RM+     P+ +T S+++K C +++ 
Sbjct: 131 LFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMAS 190

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
            N GR +H   +  G  S++ V ++LV+ YA+   +  A  VFD++  K+ V+WN++I+G
Sbjct: 191 YNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAG 250

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y + G  +EA+ LF  M+  G  P   T   +L++C+ +G ++ G+W+H  ++     + 
Sbjct: 251 YARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLV 310

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +  +L++MYA+ G++  A ++FD + +++V++  +M+ GY  HG G EA + F  M  
Sbjct: 311 GYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIR 370

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ PN++TF++VL+AC+HA L+ EG   F  MR+ Y + P V H+  +VDL GRAGLL+
Sbjct: 371 FGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRK-YNIEPKVSHYATIVDLLGRAGLLD 429

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           +A  F++++  E P  A+W A+LGA KMHKN ++G   A+ +  ++P  PG + +L+NIY
Sbjct: 430 QAKSFIEEMPIE-PTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIY 488

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AGR + V  VR IM   G+KK    S VEV+   ++F   D +HP   +I++  ++L 
Sbjct: 489 ASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLN 548

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            + +E GYVP++   +  ++++E+E +L+YHSEKLAL+F L+ T PG TIRI+KN+R+C 
Sbjct: 549 QKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCG 608

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSAIK++S+   REIIVRD  RFHHF  G CSC DYW
Sbjct: 609 DCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 180/342 (52%), Gaps = 18/342 (5%)

Query: 38  RSRSMLTKLLSLV--CDAGFITYAQRIF------FCIPSPDSFLFNTLIIRNSKANFSTD 89
           RS S+L  LL +V  C     ++ +R++      FC+    + L  +L   NSK      
Sbjct: 7   RSSSVLKSLLQIVSPCKRDLGSF-RRLWQHSESTFCVIDDRNLLRPSL---NSKTGLHVL 62

Query: 90  SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
            L+        ++ P    ++ ++K C  L  L  G+ VH HV  S +  DL +Q +L+ 
Sbjct: 63  DLI-----DCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLF 117

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            YA+  +++ AR++FD MP + +V+W SMI+GY QN  A +A+ LF  M   G  P+  T
Sbjct: 118 MYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFT 177

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
              ++  C  +   + GR +H      G   NV + +SL++MYARCG + +A  +FD + 
Sbjct: 178 LSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLG 237

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             N ++W A+I+GY   G G EA+ LF RM+  G RP   T+ A+LS+C+  G +++G  
Sbjct: 238 CKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKW 297

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           + A + +    L G   +  ++ ++ ++G + +A K    ++
Sbjct: 298 LHAHLMKSSQKLVGYVGNT-LLHMYAKSGSIRDAEKVFDKLV 338


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/535 (41%), Positives = 335/535 (62%), Gaps = 1/535 (0%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LL +    G+I  A+ +F  IP  D  L++ LI R +++  +  +   + RM+ S++ P+
Sbjct: 292 LLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPN 351

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            ++ S V+++CA+++ L+LG+ +H  V   GY+S+L V  AL++ YAK  N++ + ++F 
Sbjct: 352 EFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFR 411

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            + D + V+WN++I GY Q+GFA++A+ +F  MR   V     T   VL ACA    I  
Sbjct: 412 SLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKH 471

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
              +H  I     + + ++  SLI+ YA+CG +  A ++F+ + + +V++W A+ISGY +
Sbjct: 472 TVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYAL 531

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           HG  T+A+ELF+RM     +PN+VTFVA+LS C   GLV +G  +F SM  ++ + P ++
Sbjct: 532 HGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMD 591

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ C+V L GRAG LN+A KF+ D I   P+P VW A+L +C +HKN  LG   AE +L 
Sbjct: 592 HYTCIVRLLGRAGRLNDALKFIGD-IPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLE 650

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           +EP++   YV+LSN+YA AG +D+V ++R  M   G+KK VG S VE+  + + FS+G  
Sbjct: 651 IEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSA 710

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
            HP+   I   L+ L  +    GYVP+    +H+++EEE+   L  HSE+LALA+GL  T
Sbjct: 711 DHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMT 770

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            PG  IRI+KNLR C+DCH+  K IS    REI+VRD  RFHHF  G CSC DYW
Sbjct: 771 PPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 189/366 (51%), Gaps = 7/366 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +HA     G+ R+  + + L+      G +++A+ +F  I   D+  +  ++   S+ + 
Sbjct: 172 IHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDI 231

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             D+L  + +M ++   P+ +  ++V+K+   LS   LG+ +H     +  D++ HV  A
Sbjct: 232 PEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGA 291

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ YAK   ++ AR VF+ +P   V+ W+ +IS Y Q+   ++A  +F  M    V P+
Sbjct: 292 LLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPN 351

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             +   VL ACA +  +DLG+ +H  ++  G +  + +  +L+++YA+C N+  + EIF 
Sbjct: 352 EFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFR 411

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            + + N ++W  +I GY   G+  +A+ +F  MRA  V    VTF +VL ACA+   ++ 
Sbjct: 412 SLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKH 471

Query: 327 GHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
             ++ + + +        +  VC  ++D + + G + +A K  + +I  +     W A++
Sbjct: 472 TVQIHSLIEKSTF---NNDTIVCNSLIDTYAKCGCIRDALKVFESII--QCDVVSWNAII 526

Query: 385 GACKMH 390
               +H
Sbjct: 527 SGYALH 532



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 136/285 (47%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LL+L    G +  A+R+F  +P  +   F TL+   +      ++   +RR+       +
Sbjct: 90  LLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVN 149

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           ++  + ++K    +    L   +H      G+D +  V ++L++ Y+    V  AR VFD
Sbjct: 150 HFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFD 209

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            +  K  V W +M+S Y +N   ++A+  F+ MR  G  P+      VL A   L    L
Sbjct: 210 GIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVL 269

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ +H   V    D    +  +L++MYA+CG +  AR +F+++   +VI W+ +IS Y  
Sbjct: 270 GKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQ 329

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
                +A E+F RM    V PN  +   VL ACA+   +  G ++
Sbjct: 330 SYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQI 374



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 11/264 (4%)

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA--LVNFYAKSNNVDVARKV 163
           +Y  + +++ C        GRAVH  V   G  + L    A  L+N YAK   +  AR++
Sbjct: 47  SYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRL 106

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           FD MP++++V++ +++ GY   G  +EA GLF  ++  G   +      +L     +   
Sbjct: 107 FDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAP 166

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
            L   +H      G D N  + +SLI+ Y+ CG VS AR +FD +   + + WTAM+S Y
Sbjct: 167 GLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCY 226

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA--CAHAGLVQEGHRVFASMRQEYGLL 341
             +    +A+  F +MR  G +PN     +VL A  C  + ++ +G    A        L
Sbjct: 227 SENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCA-----VKTL 281

Query: 342 PGVEHHV--CMVDLFGRAGLLNEA 363
              E HV   ++D++ + G + +A
Sbjct: 282 CDTEPHVGGALLDMYAKCGYIEDA 305



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 170/346 (49%), Gaps = 13/346 (3%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+  +   +L+A   +  L   QQ+H  +I  GY     +   L+ +      +  +  I
Sbjct: 350 PNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEI 409

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   +   +NT+I+   ++ F+ D+L  ++ M  +++  +  TFS+V+++CA+ + +
Sbjct: 410 FRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASI 469

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
                +H  +  S +++D  V  +L++ YAK   +  A KVF+ +    VV+WN++ISGY
Sbjct: 470 KHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGY 529

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVN 241
             +G A +A+ LFN M      P+  T V +L+ C   G ++ G    +   +   +  +
Sbjct: 530 ALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPS 589

Query: 242 VVLATSLINMYARCGNVSKA-REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +   T ++ +  R G ++ A + I D+ S  + + W A++S   +H     A+  F   +
Sbjct: 590 MDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVH--KNVALGKFSAEK 647

Query: 301 AHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMR-----QEYGL 340
              + P +  T+V + +  A AG++ +   +  SMR     +E GL
Sbjct: 648 VLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGL 693



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 114/270 (42%), Gaps = 41/270 (15%)

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG--LDVNVVLATSLINMYARCGNVSKARE 263
           DS  C  +L  C   GD   GR VH  +V +G    ++   A  L+N+YA+ G ++ AR 
Sbjct: 46  DSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARR 105

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV--------- 314
           +FD M E N++++  ++ GY + G   EA  LF R++  G   N+     +         
Sbjct: 106 LFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDA 165

Query: 315 --LSACAHAGLVQEGHR----VFASMRQEYGLLPGVEHHVC---------------MVDL 353
             L+ C HA   + GH     V +S+   Y L   V H  C               MV  
Sbjct: 166 PGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSC 225

Query: 354 FGRAGLLNEAYK-FVK-DVIGEKPAPAVWTAMLGACKMHKNFDLGVEV----AEHLLSVE 407
           +    +  +A   F K  + G KP P V T++L A     +  LG  +     + L   E
Sbjct: 226 YSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTE 285

Query: 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
           P   G    L ++YA  G ++    V  I+
Sbjct: 286 PHVGG---ALLDMYAKCGYIEDARTVFEII 312


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/577 (39%), Positives = 340/577 (58%), Gaps = 11/577 (1%)

Query: 11  YEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y +IL A    K L+    +H+H+   G+     +   L+S+    G +  A+ +F+ +P
Sbjct: 333 YLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             D   +N +I   ++     +++  Y++M    + P   TF  ++ +CA+ S    G+ 
Sbjct: 393 KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKM 452

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H  +  SG  S+ H+  AL+N Y +  ++  A+ VF+    + V++WNSMI+G+ Q+G 
Sbjct: 453 IHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGS 512

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            + A  LF  M++  + PD+ T   VL+ C     ++LG+ +H  I   GL ++V L  +
Sbjct: 513 YETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNA 572

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP- 306
           LINMY RCG++  AR +F  +   +V++WTAMI G    G   +A+ELF +M+  G RP 
Sbjct: 573 LINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPP 632

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           +  TF ++LSAC HAGLV EG+++F+SM  EYG+LP +EH+ C+V L GRA    EA   
Sbjct: 633 DGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEA--- 689

Query: 367 VKDVIGEKPAP---AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
            + +I + P P   AVW  +LGAC++H N  L    A + L +   NP  Y++LSN+YA 
Sbjct: 690 -ETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAA 748

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
           AGR D V  +R +M  +G++K  G S +EVD   + F   D+SHP T EIY  L  L   
Sbjct: 749 AGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVE 808

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
             EAGY P+++  +H+L +  +E SL  HSE+LA+A+GL++T PG  IRI KNLR+C DC
Sbjct: 809 MEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDC 868

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           H+A KFIS    REII RD  RFH FK G CSC DYW
Sbjct: 869 HTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 196/368 (53%), Gaps = 13/368 (3%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H   +  G      + T L+++    G +  A++ F  I   D  ++N LI   ++ 
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQH 308

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             + ++   Y RM    ++ +  T+ +++ +C+    L  G+ +H H+   G+ SD+ + 
Sbjct: 309 GHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG 368

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL++ YA+  ++  AR++F  MP + +++WN++I+GY +     EA+ L+  M+  GV 
Sbjct: 369 NALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVK 428

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P   T + +L+ACA       G+ +HE I+  G+  N  LA +L+NMY RCG++ +A+ +
Sbjct: 429 PGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNV 488

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+     +VI+W +MI+G+  HG    A +LF  M+   + P+N+TF +VLS C +   +
Sbjct: 489 FEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEAL 548

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAV 379
           + G ++   +  E GL   V     +++++ R G L +A         +DV+        
Sbjct: 549 ELGKQIHGRI-TESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS------- 600

Query: 380 WTAMLGAC 387
           WTAM+G C
Sbjct: 601 WTAMIGGC 608



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 222/454 (48%), Gaps = 38/454 (8%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y A+L+   R + L   +++HA ++ AG G    +   L+++      +  A ++F  +P
Sbjct: 30  YVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMP 89

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             D   +N+LI   ++  F   +   +  M  +   P+  T+ +++ +C   + L  G+ 
Sbjct: 90  RRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKK 149

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H  +  +GY  D  VQ +L++ Y K  ++  AR+VF  +  + VV++N+M+  Y Q  +
Sbjct: 150 IHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAY 209

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            KE +GLF  M   G++PD  T + +L A      +D G+ +H+  V +GL+ ++ + T+
Sbjct: 210 VKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTA 269

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L+ M  RCG+V  A++ F  +++ +V+ + A+I+    HG+  EA E ++RMR+ GV  N
Sbjct: 270 LVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALN 329

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
             T++++L+AC+ +  ++ G ++  S   E G    V+    ++ ++ R G L +A +  
Sbjct: 330 RTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELF 388

Query: 368 -----KDVI----------------------------GEKPAPAVWTAMLGACKMHKNFD 394
                +D+I                            G KP    +  +L AC     + 
Sbjct: 389 YTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYA 448

Query: 395 LGVEVAEHLLSVEPENPGHYV-MLSNIYALAGRM 427
            G  + E +L    ++ GH    L N+Y   G +
Sbjct: 449 DGKMIHEDILRSGIKSNGHLANALMNMYRRCGSL 482



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 150/283 (53%), Gaps = 3/283 (1%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T+ A++++C    +L   + +H  +  +G   D+ +   L+N Y K  +V  A +VF  M
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
           P + V++WNS+IS Y Q GF K+A  LF  M++ G  P+  T + +L AC    +++ G+
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +H  I+  G   +  +  SL++MY +CG++ +AR++F  +S  +V+++  M+  Y    
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
           Y  E + LF +M + G+ P+ VT++ +L A     ++ EG R+   +  E GL   +   
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIH-KLTVEEGLNSDIRVG 267

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
             +V +  R G ++ A +  K +        V+ A++ A   H
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGIADRD--VVVYNALIAALAQH 308



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 122/252 (48%), Gaps = 10/252 (3%)

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           D  T V +L  C +   +   + +H  +V  G+  ++ L+  LINMY +C +V  A ++F
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
             M   +VI+W ++IS Y   G+  +A +LF  M+  G  PN +T++++L+AC     ++
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 326 EGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV-WTAM 383
            G ++ +  ++  Y   P V++   ++ ++G+ G L  A +      G  P   V +  M
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQVFA---GISPRDVVSYNTM 200

Query: 384 LG--ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
           LG  A K +    LG+        + P+    Y+ L + +     +D  + +  + +++G
Sbjct: 201 LGLYAQKAYVKECLGLFGQMSSEGISPDKVT-YINLLDAFTTPSMLDEGKRIHKLTVEEG 259

Query: 442 LKKHVGYSTVEV 453
           L   +   T  V
Sbjct: 260 LNSDIRVGTALV 271


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/563 (41%), Positives = 339/563 (60%), Gaps = 4/563 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP-DSFLFNTLII 79
           ++P +Q+HA L+V+G G    + T+L+ L    G ++ A+R+F  +P+  + FL+N LI 
Sbjct: 79  VRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIR 138

Query: 80  RNSKANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
             ++      ++  YR M+   ++ P N+T+  V+K+CA L  L  GR VH  V  + + 
Sbjct: 139 AYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWA 198

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
           +D+ V A L++ YAK   VD A  VFD    +  V WNSMI+   QNG   EA+ L   M
Sbjct: 199 ADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNM 258

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
              G+ P   T V  ++A A  G +  GR +H +   +G      L TSL++MYA+ G V
Sbjct: 259 AAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWV 318

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSA 317
           + AR +FD +    +I+W AMI G+GMHG+   A ELF RMR    V P+++TFV VLSA
Sbjct: 319 TVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSA 378

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           C H G+VQE   VF  M   Y + P V+H+ C+VD+ G +G   EA   +K ++  KP  
Sbjct: 379 CNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGML-VKPDS 437

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
            +W A+L  CK+HKN +L       L+ +EPE+ G+YV+LSNIYA +G+ +    VR +M
Sbjct: 438 GIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLM 497

Query: 438 IQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM 497
             +GLKK +  S +E+  K++ F +GD SHP ++EIY+ L+ L G   + GYVP++ S  
Sbjct: 498 TNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGLISQTGYVPDTTSVF 557

Query: 498 HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNRE 557
           H +E++E+   +R HSE+LA+AFGL+ T PG  + + KNLR+C DCH  IK IS    RE
Sbjct: 558 HNVEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIEQRE 617

Query: 558 IIVRDRLRFHHFKRGSCSCLDYW 580
           II+RD  R+HHF  G CSC D+W
Sbjct: 618 IIIRDVNRYHHFVNGECSCKDHW 640



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 199/425 (46%), Gaps = 19/425 (4%)

Query: 102 ISPSNY-----TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           +SP  Y      ++ +++SC     +  GR +H  + VSG   D  +   LV+ YA    
Sbjct: 54  LSPCPYPYNHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGL 113

Query: 157 VDVARKVFDRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-VNPDSTTCVCVL 214
           V VAR++FD MP++ +V  WN +I  Y ++G  + AI L+  M   G + PD+ T   VL
Sbjct: 114 VSVARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVL 173

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
            ACA L D+  GR VH+ ++      +V +   LI+MYA+CG V +A  +FD  +  + +
Sbjct: 174 KACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAV 233

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-S 333
            W +MI+  G +G   EA+ L   M A G+ P  VT V+ +SA A AG +  G  +    
Sbjct: 234 VWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYG 293

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
            R+ +G    ++    ++D++ ++G +  A      +   +     W AM+    MH + 
Sbjct: 294 WRRGFGSQDKLK--TSLLDMYAKSGWVTVARVLFDQLFHRELIS--WNAMICGFGMHGHA 349

Query: 394 DLGVEVAEHLLSVEPENPGHYVMLSNIYAL--AGRMDRVEVVRNIMIQ-KGLKKHVGYST 450
           D   E+   + +     P H   +  + A    G +   + V ++M+    +K  V + T
Sbjct: 350 DHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYT 409

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQ----YLDELMGRCREAGYVPESESAMHELEEEERE 506
             VD   +     + S      + +        L+  C+    V  +E A+H+L E E E
Sbjct: 410 CLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPE 469

Query: 507 YSLRY 511
            +  Y
Sbjct: 470 DAGNY 474


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/588 (39%), Positives = 344/588 (58%), Gaps = 66/588 (11%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           L+Q+HAHL+      S   L+++ S+       +YA+ IF  + + +   +NT +   ++
Sbjct: 31  LKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAE 90

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
            +   D++  + R+   +ISP +YT S V+K+C+ L  +  G+ VH +V   G  S++ +
Sbjct: 91  GDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFL 150

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN--------------------------- 176
           Q  +V+ YA    + VARKVFD+MP + V+ WN                           
Sbjct: 151 QNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNV 210

Query: 177 ----SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
               SMI GY Q G +KEAI LF  M D G+ P+  T V VL ACA +G++ LGR +H+F
Sbjct: 211 RSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDF 270

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
               G + N+ +  +LI+MY +CG +  A  IFD M E  V++W+AMI+G   HG   +A
Sbjct: 271 SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDA 330

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           + LF++M   GV+PN VTF+ +L AC+H G+V++G + FASM ++YG++P +EH+ CMVD
Sbjct: 331 LALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVD 390

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           LF RAGLL EA++F+ + +   P   VW A+LG CK+HKN  L  E   HL  ++P N G
Sbjct: 391 LFSRAGLLQEAHEFIMN-MPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDG 449

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
           +YV+LSNIYA AGR + V  VR +M  +G                               
Sbjct: 450 YYVVLSNIYAEAGRWEDVARVRKLMRDRGT------------------------------ 479

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
                ++L+ R +  GYVP +   + ++EE+++E  L  HSEKLA+ FGL++T+PG  IR
Sbjct: 480 ----WEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIR 535

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           I+KNLR+C DCH+A+K ISV + REI+VRDR RFH FK GSCSC DYW
Sbjct: 536 IMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 583


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/558 (40%), Positives = 351/558 (62%), Gaps = 7/558 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H + I  G      +   L+++    G +  A+ IF  +   D   +N+L+    +   
Sbjct: 262 IHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKK 321

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS---GYDSDLHV 143
              +L  Y +M    + P   T  ++    A L      R++H   FV+    +  D+ +
Sbjct: 322 PVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHG--FVTRRCWFLHDIAL 379

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-G 202
             A+++ YAK   +D ARKVF+ +P K V++WNS+I+GY QNG A EAI +++ MR + G
Sbjct: 380 GNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSG 439

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
             P+  T V +L A +QLG +  G   H  ++   L  ++ ++T L++MY +CG ++ A 
Sbjct: 440 AVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADAL 499

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
            +F  +   + ++W A+IS +G+HGYG +AV+LF  M++ GV+P+++TFV++LSAC+H+G
Sbjct: 500 SLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSG 559

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           LV EG   F  M++ YG+ P ++H+ CMVDLFGRAG L +A+ FVK+ +  +P  +VW A
Sbjct: 560 LVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKN-MPVRPDVSVWGA 618

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LGAC++H+N +L   V++HLL VE EN G+YV+LSNIYA  G  + V+ VR++   +GL
Sbjct: 619 LLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGL 678

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
           KK  G+S++EVD+K  +F  G+++HP   EIY  L  L  + +  GYVP+    + ++E+
Sbjct: 679 KKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVED 738

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           +E+E  L  HSE+LA+AFG++ T P  T++I KNLR+C DCH+A KFIS  T REIIVRD
Sbjct: 739 DEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRD 798

Query: 563 RLRFHHFKRGSCSCLDYW 580
             RFHHFK G CSC DYW
Sbjct: 799 SNRFHHFKDGVCSCGDYW 816



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 9/353 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK- 83
           +Q+HA L+V+G  +S  +  KL++     G I +A+  F  I + D + +N++I   ++ 
Sbjct: 60  KQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARI 119

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
            +F      F   +  S +   +YTF  VI++C +L   + GR VHC V   G++ D+++
Sbjct: 120 GHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNL---DDGRKVHCLVLKLGFECDVYI 176

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
            A+ ++FY++   V +A  +FD M  + +  WN+MISG+  NG   EA+ +F+ MR   V
Sbjct: 177 AASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSV 236

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           + DS T   +L  C QL DI  G  +H + +  GL+ ++ +  +LINMYA+ G +  A  
Sbjct: 237 SMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAET 296

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           IF+ M   ++++W ++++ +  +     A+ ++++M + GV P+ +T V++ S  A  G 
Sbjct: 297 IFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGN 356

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVI 371
                 +   + +    L  +     ++D++ + G ++ A K      VKDVI
Sbjct: 357 FLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVI 409



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 149/300 (49%), Gaps = 27/300 (9%)

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           ++L + +H  + VSG    + + A L+N YA   ++  AR  FD++  K V  WNSMIS 
Sbjct: 56  VHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISA 115

Query: 182 YEQNGFAKEAIGLFN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           Y + G    A+  FN  +    +  D  T   V+ AC   G++D GR VH  ++  G + 
Sbjct: 116 YARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLVLKLGFEC 172

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +V +A S I+ Y+R G VS A  +FD M   ++  W AMISG+ ++G   EA+E+F  MR
Sbjct: 173 DVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMR 232

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH--VC--MVDLFGR 356
              V  ++VT  ++L  C     VQ    +   +   Y +  G+E    VC  +++++ +
Sbjct: 233 FKSVSMDSVTISSLLPIC-----VQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAK 287

Query: 357 AGLLNEAYKF-----VKDVIGEKPAPAVWTAMLGACKMHKN--FDLGVEVAEHLLSVEPE 409
            G L  A        V+D++        W ++L A + +K     LGV    H + V P+
Sbjct: 288 FGELRSAETIFNQMKVRDIVS-------WNSLLAAFEQNKKPVIALGVYNKMHSIGVVPD 340


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/562 (41%), Positives = 355/562 (63%), Gaps = 7/562 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           Q+VH HL+  G+ +   + TKL+++      I  A+++F    +   +++N L    S A
Sbjct: 90  QRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLA 149

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA----HLSILNLGRAVHCHVFVSGYDSD 140
               + L  YRRM    I    +T++ V+K+C      +S+LN GR +H H+   GYD  
Sbjct: 150 GHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGY 209

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN--LM 198
           +H+   LV+ YAK   V  A  VF++MP K+VV+W++MI+ Y +NG A EA+ LF   ++
Sbjct: 210 VHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELML 269

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
               + P+S T V VL ACA L  ++ GR +H +I+ +GLD  + + ++L+ MYARCG +
Sbjct: 270 ETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKL 329

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
              + +FD M + +V++W ++IS YG+HG+G +A+ +F  M  +GV P+ ++FV+VL AC
Sbjct: 330 ELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGAC 389

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           +HAGLV EG  +F SM   +G+ P VEH+ CMVDL GRA  L EA K ++++  E P P 
Sbjct: 390 SHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIE-PGPK 448

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
           VW ++LG+C++H N +L    +  L  +EP N G+YV+L++IYA AG  D V+ V+ ++ 
Sbjct: 449 VWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLE 508

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
            +GL+K  G S +EV +K Y F   D+ +P   +++  L +L    +E GYVP+++  ++
Sbjct: 509 ARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLY 568

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
           +L+  E+E  +  HSEKLA+AFGL+ +S G  IRI K+LR+C DCHS  KFIS   N+EI
Sbjct: 569 DLKAAEKERIVLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEI 628

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           +VRD  RFHHF+ G CSC DYW
Sbjct: 629 LVRDVNRFHHFRDGVCSCGDYW 650



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 180/387 (46%), Gaps = 51/387 (13%)

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
           +P+ +T+  +I SC H + L   + VH H+  +G+D D  +   L+N Y+  +++D ARK
Sbjct: 67  NPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARK 126

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ--- 219
           VFD+  ++++  +N++       G  +E + ++  M   G+  D  T   VL AC     
Sbjct: 127 VFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASEC 186

Query: 220 -LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
            +  ++ GR +H  I+  G D  V + T+L++MYA+ G VS A  +F+ M   NV++W+A
Sbjct: 187 FVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSA 246

Query: 279 MISGYGMHGYGTEAVELFHR--MRAHGVRPNNVTFVAV---------------------- 314
           MI+ Y  +G   EA+ELF    +    + PN+VT V+V                      
Sbjct: 247 MIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILR 306

Query: 315 -------------LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
                        ++  A  G ++ G RVF  M +       V     ++  +G  G   
Sbjct: 307 KGLDSILPVISALVTMYARCGKLELGQRVFDQMDKR-----DVVSWNSLISSYGVHGFGK 361

Query: 362 EAYKFVKDVI--GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG--HYVML 417
           +A    +++   G +P+P  + ++LGAC      D G  +   +       P   HY  +
Sbjct: 362 KAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACM 421

Query: 418 SNIYALAGRMDR-VEVVRNIMIQKGLK 443
            ++   A R++   +++ N+ I+ G K
Sbjct: 422 VDLLGRANRLEEAAKIIENMRIEPGPK 448


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/558 (39%), Positives = 353/558 (63%), Gaps = 3/558 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           Q+VHAH+I   Y     + T+L+ L      +  A+ +F  +   +   +  +I   S+ 
Sbjct: 30  QRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQR 89

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            F++++L  + +M+ S+  P+ +TF+ V+ SC   S   LGR +H H+F   Y++ + V 
Sbjct: 90  GFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVG 149

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ++L++ YAK+  +  AR VF+ +P++ VV+  ++ISGY Q G  +EA+ LF  ++  G++
Sbjct: 150 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMS 209

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +  T   +L A + L  +D G+ VH  ++   L   VVL  SLI+MY++CGN++ AR+I
Sbjct: 210 SNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKI 269

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGL 323
           F+ M    VI+W AM+ GY  HG G E V+LF  MR    V+P++VTF+AVLS C+H GL
Sbjct: 270 FNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGL 329

Query: 324 VQEGHRVFASMRQEYGLL-PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
             +G  +F  M      +  G+EH+ C++DL GRAG + EA++ +K +  E P  A+W +
Sbjct: 330 EDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFE-PTAAIWGS 388

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LGAC++H N ++G  V   LL +EPEN G+YV+LSN+YA AGR + V  VR +M++K +
Sbjct: 389 LLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAV 448

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
            K  G S +E+DQ  + F   D+SHP   E++  + EL+ + +E+GYVP+    +++++E
Sbjct: 449 IKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDE 508

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           E++E  L  HSEKLALAFGL+ TS G+ +R++KNLR+CVDCH+  KF+S    R++ +RD
Sbjct: 509 EQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRD 568

Query: 563 RLRFHHFKRGSCSCLDYW 580
           + RFHH   G CSC DYW
Sbjct: 569 KNRFHHVAGGICSCGDYW 586



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 163/305 (53%), Gaps = 12/305 (3%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           ++ ++  C +   +  G+ VH H+  + Y   +++   L+  Y K   +  AR VFD M 
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR 72

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           +++VV+W +MISGY Q GFA EA+ LF  M      P+  T   VL++C      +LGR 
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQ 132

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H  I  +  + ++ + +SL++MYA+ G + +AR +F+ + E +V++ TA+ISGY   G 
Sbjct: 133 IHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 192

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEHH 347
             EA+ELF R++  G+  N VT+ ++L+A +    +  G +V +  +R E      +++ 
Sbjct: 193 DEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNS 252

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLS 405
             ++D++ + G LN A K   ++    P   V  W AML     H     G+EV +    
Sbjct: 253 --LIDMYSKCGNLNYARKIFNNM----PVRTVISWNAMLVGYSKHGK---GIEVVKLFKL 303

Query: 406 VEPEN 410
           +  EN
Sbjct: 304 MREEN 308


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/572 (39%), Positives = 344/572 (60%), Gaps = 5/572 (0%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
           ++L+    +  +  +HA LI  G+ +   M+ +LL        I YA RIF    +P+ +
Sbjct: 44  SLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVY 103

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
           L+  LI     +    +++  Y RM+  +I P NY  ++++K+C     L  GR VH   
Sbjct: 104 LYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRA 163

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD----KSVVAWNSMISGYEQNGFA 188
              G+ S+  V+  ++  Y K   +  AR+VF+ MP+    K  V W +MI G+ +N   
Sbjct: 164 LKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEET 223

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
             A+  F  M+   V P+  T VCVL+AC+QLG +++GRWVH ++    +++N+ +  +L
Sbjct: 224 NRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNAL 283

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           INMY+RCG++ +A+ +FD M + +VI +  MISG  M+G   +A+ELF  M    +RP N
Sbjct: 284 INMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTN 343

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           VTFV VL+AC+H GLV  G  +F SM ++Y + P +EH+ CMVDL GR G L EAY  ++
Sbjct: 344 VTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIR 403

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
             +   P   +   +L ACKMHKN +LG +VA+ L      + G YV+LS++YA +G+  
Sbjct: 404 -TMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWK 462

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
               VR  M + G++K  G S++EV+ + + F +GD  HP    IY+ L+EL    R  G
Sbjct: 463 EAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEG 522

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           Y PE E  + ++E+ E+E++L  HSE+LA+ +GL+ T P   IR++KNLR+C DCHSAIK
Sbjct: 523 YHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIK 582

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            I+  T R+I+VRDR RFH+F+ G+CSC DYW
Sbjct: 583 LIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/580 (37%), Positives = 343/580 (59%), Gaps = 5/580 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + ++L A   L  L Q   +HA +   G     S+   LL++      +  A +
Sbjct: 218 EPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAK 277

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF  +P  D   ++ +I   ++ +   +++ FY +M +  + P+ YTF++V+ +CA +  
Sbjct: 278 IFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGD 337

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  GRAVH  +  +GY   L    ALV+ Y    ++D AR +FD++ ++    W  +I G
Sbjct: 338 LRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGG 397

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCV-CVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           Y + G     + L+  M++    P +     CV++ACA LG     R  H  I   G+  
Sbjct: 398 YSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMIS 457

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           + VLATSL+NMY+R GN+  AR++FD MS  + +AWT +I+GY  HG    A+ L+  M 
Sbjct: 458 DFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEME 517

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G  P+ +TF+ VL AC+HAGL ++G ++F S++ +Y + P + H+ C++DL  RAG L
Sbjct: 518 LEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRL 577

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
           ++A + + + +  +P    W+++LGA ++HK+       A  +  ++P +P  YV+LSN+
Sbjct: 578 SDAEELI-NAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNV 636

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           +A+ G +  +  VRN M+ +G+KK  G S +EV  + + F++GD SHP   EI+  L  L
Sbjct: 637 HAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRL 696

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
             + +EAGYVPESE  +H++ E+E+E  LR HSEKLA+AFGL+ T+PG T+RI   LR+C
Sbjct: 697 SPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRIC 756

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCHSA+KFIS    REIIVRD  RFH F+ G CSC DYW
Sbjct: 757 HDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 216/424 (50%), Gaps = 13/424 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLI-VAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           QP+   Y  +L A   ++ L++   +H+ +    G      +   LL++    G +  A+
Sbjct: 118 QPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAK 177

Query: 61  RIFFCIPSPDSFL-FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           R+F  +    S   +N +I   +++    +++  Y  M   ++ PS  TF++V+ +C++L
Sbjct: 178 RLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNL 234

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
            +L+ GR +H  +   G + DL +Q AL+  YA+   +D A K+F R+P + VV+W++MI
Sbjct: 235 GLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMI 294

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           + + +     EAI  ++ M+  GV P+  T   VL ACA +GD+  GR VH+ I+G G  
Sbjct: 295 AAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYK 354

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
           + +V  T+L+++Y   G++ +AR +FD +   +   WT +I GY   G+ T  +EL+  M
Sbjct: 355 ITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREM 414

Query: 300 RAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           +     P   + +  V+SACA  G   +  +  + +  + G++        +V+++ R G
Sbjct: 415 KNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEAD-GMISDFVLATSLVNMYSRWG 473

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
            L E+ + V D +  +   A WT ++     H    L + + +  + +E   P     + 
Sbjct: 474 NL-ESARQVFDKMSSRDTLA-WTTLIAGYAKHGEHGLALGLYKE-MELEGAEPSELTFMV 530

Query: 419 NIYA 422
            +YA
Sbjct: 531 VLYA 534



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 198/378 (52%), Gaps = 14/378 (3%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQRIFFCIPSP 69
           Y   L+    L+ ++Q+H    ++G   +   L  +++      G +  A+  F  I   
Sbjct: 30  YRDALRQCQDLESVRQIHDR--ISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARK 87

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           + + + +++   ++      +L  Y+RM   ++ P+   ++ V+ +CA +  L  G+A+H
Sbjct: 88  NDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIH 144

Query: 130 CHVF-VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-KSVVAWNSMISGYEQNGF 187
             +    G   D+ ++ +L+  YAK  +++ A+++F+RM   +SV +WN+MI+ Y Q+G 
Sbjct: 145 SRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGH 204

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            +EAI L+    D  V P   T   VL+AC+ LG +D GR +H  I  +G ++++ L  +
Sbjct: 205 FEEAIRLYE---DMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNA 261

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L+ MYARC  +  A +IF  +   +V++W+AMI+ +       EA+E + +M+  GVRPN
Sbjct: 262 LLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPN 321

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
             TF +VL ACA  G ++ G  V   +    G    + +   +VDL+   G L+EA    
Sbjct: 322 YYTFASVLLACASVGDLRAGRAVHDQILGN-GYKITLVNGTALVDLYTSYGSLDEARSLF 380

Query: 368 KDVIGEKPAPAVWTAMLG 385
             +  E     +WT ++G
Sbjct: 381 DQI--ENRDEGLWTVLIG 396



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 159/317 (50%), Gaps = 24/317 (7%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           +V  Y K  +V  AR  FD +  K+  +W SM++ Y QNG  + A+ L+  M    + P+
Sbjct: 64  IVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPN 120

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVG-QGLDVNVVLATSLINMYARCGNVSKAREIF 265
                 VL ACA +  ++ G+ +H  I G +GL ++V+L  SL+ MYA+CG++  A+ +F
Sbjct: 121 PVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLF 180

Query: 266 DMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           + MS   +V +W AMI+ Y   G+  EA+ L+  M    V P+  TF +VLSAC++ GL+
Sbjct: 181 ERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLL 237

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAV 379
            +G ++ A +    G    +     ++ ++ R   L++A K       +DV+        
Sbjct: 238 DQGRKIHALISSR-GTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVS------- 289

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVEVVRNIM 437
           W+AM+ A      FD  +E     + +E   P +Y   S + A A  G +     V + +
Sbjct: 290 WSAMIAAFAETDLFDEAIEFYSK-MQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQI 348

Query: 438 IQKGLKKHVGYSTVEVD 454
           +  G K  +   T  VD
Sbjct: 349 LGNGYKITLVNGTALVD 365



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 120/247 (48%), Gaps = 14/247 (5%)

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           A  Q  D++  R +H+ I G     NV L   ++  Y +CG+V+ AR  FD ++  N  +
Sbjct: 33  ALRQCQDLESVRQIHDRISGAA-SANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYS 91

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           W +M++ Y  +G+   A++L+ RM    ++PN V +  VL ACA    ++EG  + + + 
Sbjct: 92  WGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIHSRIS 148

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
              GL   V     ++ ++ + G L +A +  + + G +   + W AM+ A     +F+ 
Sbjct: 149 GTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSS-WNAMIAAYAQSGHFEE 207

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
            + + E  + VEP       +LS    L G +D+   +  ++  +G       + +++  
Sbjct: 208 AIRLYED-MDVEPSVRTFTSVLSACSNL-GLLDQGRKIHALISSRG-------TELDLSL 258

Query: 456 KNYLFSM 462
           +N L +M
Sbjct: 259 QNALLTM 265


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/529 (41%), Positives = 332/529 (62%), Gaps = 3/529 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G ++YA+++F  +  P  FL+NT++    K      ++  Y +M    + P  +TF  VI
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           K+CA L+ L  G  +H HV   G +    V+  L+  Y K   +  A  +F  M ++ +V
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           AWN++I+   Q GF+ +A+  F  M   G+ PDS T V  L+AC  LG ++ G  ++EF 
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
             +G+D N+++  + ++M A+CG++ KA  +FD M + NVI+W+ +I GY ++G   +A+
Sbjct: 263 REEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKAL 322

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ--EYGLLPGVEHHVCMV 351
            LF RM+  GV+PN VTF+AVLSAC+H G V EG + F  M Q  +  + P  EH+ CMV
Sbjct: 323 ALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMV 382

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411
           DL GR+G L EAY F+K ++  +  P +W A+LGAC +H+N  LG  VA+ L  + PE  
Sbjct: 383 DLLGRSGHLEEAYNFIK-IMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIA 441

Query: 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTN 471
            ++V+LSN+YA AGR   VE VR  M +KG +K   YS+VE + + ++   GDKSHP + 
Sbjct: 442 SYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSA 501

Query: 472 EIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTI 531
            I   L++L+ + +  GY+PE++S  H++E+EE+E +L  HSEKLA+AF L+  SP   I
Sbjct: 502 SILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKFPI 561

Query: 532 RIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R++KNLR+C DCH+  K +S  T REII+RD+ RFHHFK G CSC D+W
Sbjct: 562 RVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/557 (40%), Positives = 344/557 (61%), Gaps = 4/557 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H++ I  G      +  KL+ L  + G +   Q++F  +   D   +N++I        
Sbjct: 269 IHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQ 328

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLHVQA 145
              ++L ++ M +S I P   T  ++    + L  +   R+V       G+   D+ +  
Sbjct: 329 PLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGN 388

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG--V 203
           A+V  YAK   VD AR VF+ +P+K V++WN++ISGY QNGFA EAI ++N+M + G  +
Sbjct: 389 AVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEI 448

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           + +  T V VL AC+Q G +  G  +H  ++  GL ++V + TSL +MY +CG +  A  
Sbjct: 449 SANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALS 508

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +F  +  +N + W  +I+ +G HG+G +AV LF  M   GV+P+++TFV +LSAC+H+GL
Sbjct: 509 LFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGL 568

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           V EG   F  M+ +YG+ P ++H+ CMVDL+GRAG L  A  F+K  +  +P  ++W A+
Sbjct: 569 VDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKS-MPLQPDASIWGAL 627

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           L AC++H N DLG   +EHL  VEPE+ G++V+LSN+YA AG+ + V+ +R+I   KGL+
Sbjct: 628 LSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLR 687

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K  G+S++EVD K  +F  G+++HP   E+Y+ L  L  + +  GYVP+    + ++E++
Sbjct: 688 KTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDD 747

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
           E+E+ L  HSE+LA+AF L+ T    TIRI KNLR+C DCHS  KFIS  T REIIVRD 
Sbjct: 748 EKEHILMSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDS 807

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFHHFK G CSC DYW
Sbjct: 808 NRFHHFKNGVCSCGDYW 824



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 217/438 (49%), Gaps = 13/438 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           QP    + ++LKA   +    ++H   +  G+     +   L+ L C  G +  A+ +F 
Sbjct: 150 QPDYRTFPSVLKACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFD 209

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            +P+ D   +N +I    ++  + ++L     +   +    + T  +++ +C      N 
Sbjct: 210 EMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMD----SVTVVSLLSACTEAGDFNR 265

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G  +H +    G +S+L V   L++ YA+  ++   +KVFDRM  + +++WNS+I  YE 
Sbjct: 266 GVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYEL 325

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV-NVV 243
           N     AI LF  MR   + PD  T + + +  +QLG+I   R V  F + +G  + ++ 
Sbjct: 326 NEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDIT 385

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           +  +++ MYA+ G V  AR +F+ +   +VI+W  +ISGY  +G+ +EA+E+++ M   G
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEG 445

Query: 304 --VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             +  N  T+V+VL AC+ AG +++G ++   + +  GL   V     + D++G+ G L+
Sbjct: 446 GEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVGTSLADMYGKCGRLD 504

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH--YVMLSN 419
           +A      +      P  W  ++     H + +  V + + +L  E   P H  +V L +
Sbjct: 505 DALSLFYQIPRVNSVP--WNTLIACHGFHGHGEKAVMLFKEMLD-EGVKPDHITFVTLLS 561

Query: 420 IYALAGRMDRVEVVRNIM 437
             + +G +D  E    +M
Sbjct: 562 ACSHSGLVDEGEWCFEMM 579



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 189/344 (54%), Gaps = 8/344 (2%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+  + +HA L+V+   ++  +  KL++L C  G +  A+  F  I + D + +N +I  
Sbjct: 67  LQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISG 126

Query: 81  NSKANFSTDSL-LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             +A +S++ +  F   M+ S + P   TF +V+K+C +++    G  +HC     G+  
Sbjct: 127 YGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMW 183

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D++V A+L++ Y +   V  AR +FD MP + + +WN+MISGY Q+G AKEA+ L + +R
Sbjct: 184 DVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR 243

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
                 DS T V +L+AC + GD + G  +H + +  GL+  + ++  LI++YA  G++ 
Sbjct: 244 AM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLK 299

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
             +++FD M   ++I+W ++I  Y ++     A+ LF  MR   ++P+ +T +++ S  +
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILS 359

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
             G ++    V     ++   L  +     +V ++ + GL++ A
Sbjct: 360 QLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSA 403



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 14/227 (6%)

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR-M 299
           NV ++  L+N+Y   GNV+ AR  FD +   +V AW  MISGYG  GY +E +  F   M
Sbjct: 85  NVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFM 144

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
            + G++P+  TF +VL AC +   V +G+++   +  ++G +  V     ++ L+ R G 
Sbjct: 145 LSSGLQPDYRTFPSVLKACRN---VTDGNKIHC-LALKFGFMWDVYVAASLIHLYCRYGA 200

Query: 360 LNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           +  A    + +  E P   +  W AM+       N    + +++ L +++       V L
Sbjct: 201 VVNA----RILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMDSVT---VVSL 253

Query: 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
            +    AG  +R   + +  I+ GL+  +  S   +D      S+ D
Sbjct: 254 LSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKD 300



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/269 (20%), Positives = 107/269 (39%), Gaps = 49/269 (18%)

Query: 10  AYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
            + ++L A  +   L+Q   +H  L+  G      + T L  +    G +  A  +F+ I
Sbjct: 454 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQI 513

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P  +S  +NTLI  +        +++ ++ M+   + P + TF  ++ +C+H  +++ G 
Sbjct: 514 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGE 573

Query: 127 AVHCHVFVS---GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
              C   +    G    L     +V+ Y ++  +++A      MP               
Sbjct: 574 --WCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMP--------------- 616

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV---GQGLDV 240
                              + PD++    +L+AC   G++DLG+   E +     + +  
Sbjct: 617 -------------------LQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGY 657

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMS 269
           +V+L+    NMYA  G      EI  + S
Sbjct: 658 HVLLS----NMYASAGKWEGVDEIRSITS 682


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/580 (37%), Positives = 343/580 (59%), Gaps = 5/580 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + ++L A   L  L Q   +HA +   G     S+   LL++      +  A +
Sbjct: 217 EPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAK 276

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF  +P  D   ++ +I   ++ +   +++ FY +M +  + P+ YTF++V+ +CA +  
Sbjct: 277 IFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGD 336

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  GRAVH  +  +GY   L    ALV+ Y    ++D AR +FD++ ++    W  +I G
Sbjct: 337 LRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGG 396

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCV-CVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           Y + G     + L+  M++    P +     CV++ACA LG     R  H  I   G+  
Sbjct: 397 YSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMIS 456

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           + VLATSL+NMY+R GN+  AR++FD MS  + +AWT +I+GY  HG    A+ L+  M 
Sbjct: 457 DFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEME 516

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G  P+ +TF+ VL AC+HAGL ++G ++F S++ +Y + P + H+ C++DL  RAG L
Sbjct: 517 LEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRL 576

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
           ++A + + + +  +P    W+++LGA ++HK+       A  +  ++P +P  YV+LSN+
Sbjct: 577 SDAEELI-NAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNV 635

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           +A+ G +  +  VRN M+ +G+KK  G S +EV  + + F++GD SHP   EI+  L  L
Sbjct: 636 HAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRL 695

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
             + +EAGYVPESE  +H++ E+E+E  LR HSEKLA+AFGL+ T+PG T+RI   LR+C
Sbjct: 696 SPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRIC 755

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCHSA+KFIS    REIIVRD  RFH F+ G CSC DYW
Sbjct: 756 HDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 215/423 (50%), Gaps = 12/423 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLI-VAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           QP+   Y  +L A   +K L++   +H+ +    G      +   LL++    G +  A+
Sbjct: 118 QPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAK 177

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           R+F  +       +N +I   +++    +++  Y  M   ++ PS  TF++V+ +C++L 
Sbjct: 178 RLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLG 234

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
           +L+ GR +H  +   G + DL +Q AL+  YA+   +D A K+F R+P + VV+W++MI+
Sbjct: 235 LLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIA 294

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
            + +     EAI  ++ M+  GV P+  T   VL ACA +GD+  GR VH+ I+G G  +
Sbjct: 295 AFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKI 354

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
            +V  T+L+++Y   G++ +AR +FD +   +   WT +I GY   G+ T  +EL+  M+
Sbjct: 355 TLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMK 414

Query: 301 AHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
                P   + +  V+SACA  G   +  +  + +  + G++        +V+++ R G 
Sbjct: 415 NTTKVPATKIIYSCVISACASLGAFADARQAHSDIEAD-GMISDFVLATSLVNMYSRWGN 473

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L E+ + V D +  +   A WT ++     H    L + + +  + +E   P     +  
Sbjct: 474 L-ESARQVFDKMSSRDTLA-WTTLIAGYAKHGEHGLALGLYKE-MELEGAEPSELTFMVV 530

Query: 420 IYA 422
           +YA
Sbjct: 531 LYA 533



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 198/377 (52%), Gaps = 13/377 (3%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQRIFFCIPSP 69
           Y   L+    L+ ++Q+H    ++G   +   L  +++      G +  A+  F  I   
Sbjct: 30  YRDALRQCQDLESVRQIHDR--ISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARK 87

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           + + + +++   ++      +L  Y+RM   ++ P+   ++ V+ +CA +  L  G+A+H
Sbjct: 88  NDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAIH 144

Query: 130 CHVF-VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
             +    G   D+ ++ +L+  YAK  +++ A+++F+RM  +SV +WN+MI+ Y Q+G  
Sbjct: 145 SRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHF 204

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
           +EAI L+    D  V P   T   VL+AC+ LG +D GR +H  I  +G ++++ L  +L
Sbjct: 205 EEAIRLYE---DMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNAL 261

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           + MYARC  +  A +IF  +   +V++W+AMI+ +       EA+E + +M+  GVRPN 
Sbjct: 262 LTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNY 321

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
            TF +VL ACA  G ++ G  V   +    G    + +   +VDL+   G L+EA     
Sbjct: 322 YTFASVLLACASVGDLRAGRAVHDQILGN-GYKITLVNGTALVDLYTSYGSLDEARSLFD 380

Query: 369 DVIGEKPAPAVWTAMLG 385
            +  E     +WT ++G
Sbjct: 381 QI--ENRDEGLWTVLIG 395



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 159/316 (50%), Gaps = 23/316 (7%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           +V  Y K  +V  AR  FD +  K+  +W SM++ Y QNG  + A+ L+  M    + P+
Sbjct: 64  IVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPN 120

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVG-QGLDVNVVLATSLINMYARCGNVSKAREIF 265
                 VL ACA +  ++ G+ +H  I G +GL ++V+L  SL+ MYA+CG++  A+ +F
Sbjct: 121 PVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLF 180

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           + MS  +V +W AMI+ Y   G+  EA+ L+  M    V P+  TF +VLSAC++ GL+ 
Sbjct: 181 ERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLD 237

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAVW 380
           +G ++ A +    G    +     ++ ++ R   L++A K       +DV+        W
Sbjct: 238 QGRKIHALISSR-GTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVS-------W 289

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVEVVRNIMI 438
           +AM+ A      FD  +E     + +E   P +Y   S + A A  G +     V + ++
Sbjct: 290 SAMIAAFAETDLFDEAIEFYSK-MQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQIL 348

Query: 439 QKGLKKHVGYSTVEVD 454
             G K  +   T  VD
Sbjct: 349 GNGYKITLVNGTALVD 364



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 119/247 (48%), Gaps = 15/247 (6%)

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           A  Q  D++  R +H+ I G     NV L   ++  Y +CG+V+ AR  FD ++  N  +
Sbjct: 33  ALRQCQDLESVRQIHDRISGAA-SANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYS 91

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           W +M++ Y  +G+   A++L+ RM    ++PN V +  VL ACA    ++EG  + + + 
Sbjct: 92  WGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAIHSRIS 148

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
              GL   V     ++ ++ + G L +A +  + + G   +   W AM+ A     +F+ 
Sbjct: 149 GTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSS--WNAMIAAYAQSGHFEE 206

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
            + + E  + VEP       +LS    L G +D+   +  ++  +G       + +++  
Sbjct: 207 AIRLYED-MDVEPSVRTFTSVLSACSNL-GLLDQGRKIHALISSRG-------TELDLSL 257

Query: 456 KNYLFSM 462
           +N L +M
Sbjct: 258 QNALLTM 264


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/565 (41%), Positives = 337/565 (59%), Gaps = 2/565 (0%)

Query: 17  AGPRLKPL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFN 75
           AG  L+ L +Q+H+ LI    G    +   L+ +      +  A+ +F  +P  D   +N
Sbjct: 223 AGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWN 282

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
            +I  +S+     ++   +  M    I  +  T S V+KS A L    + R +H     S
Sbjct: 283 AVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKS 342

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G++ D +V  +L++ Y K  +V+ A +VF+  P   +V + S+++ Y Q+G  +EA+ L+
Sbjct: 343 GFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLY 402

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             M+D G+ PDS  C  +L ACA L   + G+ VH  I+  G   ++    SL+NMYA+C
Sbjct: 403 LEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKC 462

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G++  A   F  +    +++W+AMI G   HGYG EA++LF +M   GV PN++T V+VL
Sbjct: 463 GSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVL 522

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
            AC HAGLV E    F SM+  +G+ P  EH+ CM+DL GRAG L  A + V  +  +  
Sbjct: 523 CACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQAN 582

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
           A  VW A+LGA ++HKN DLG + AE LL++EPE  G +V+L+NIYA  G  D+V  VR 
Sbjct: 583 A-LVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRR 641

Query: 436 IMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESES 495
           +M    +KK  G S +EV  K Y F +GD+SH  + EIY  LDEL    ++AGYVP  E 
Sbjct: 642 LMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEI 701

Query: 496 AMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
            +H++E  E+E  L +HSEKLA+AFGL+ T PG  IR+ KNLR+C DCH+ +KFIS   +
Sbjct: 702 DLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVS 761

Query: 556 REIIVRDRLRFHHFKRGSCSCLDYW 580
           REIIVRD  RFHHF+ GSCSC +YW
Sbjct: 762 REIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 203/400 (50%), Gaps = 8/400 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H +LI  GY         L+ +    G +  A  +F  I  PD   +N +I      
Sbjct: 131 RKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLH 190

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            +   +L   R M  S + P+ +T S+ +K+CA +++  LGR +H  +      SD  + 
Sbjct: 191 EYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLG 250

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             L++ Y+K N++D AR VF  MP++ ++AWN++ISG+ QN   +EA  LF LM   G+ 
Sbjct: 251 VGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIG 310

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            + TT   VL + A L    + R +H   +  G + +  +  SLI+ Y +CG+V  A  +
Sbjct: 311 FNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRV 370

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+    ++++ +T++++ Y   G G EA+ L+  M+  G++P++    ++L+ACA     
Sbjct: 371 FEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAY 430

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTA 382
           ++G +V   + + +G +  +     +V+++ + G + +A      +    P   +  W+A
Sbjct: 431 EQGKQVHVHILK-FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRI----PVRGIVSWSA 485

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           M+G    H      +++ + +L V    P H  ++S + A
Sbjct: 486 MIGGLAQHGYGKEALQLFKQMLKVGVP-PNHITLVSVLCA 524



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 197/430 (45%), Gaps = 35/430 (8%)

Query: 10  AYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           A+ ++LKA    K L   +QVH  ++V G+     +   L+ L    G    A+ +F  I
Sbjct: 12  AFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAI 71

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P      +N L      ++   +++  +  M++S I P+ ++ S++I  C  L     GR
Sbjct: 72  PDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGR 131

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H ++   GYDSD     ALV+ YAK   ++ A  VFD +    +V+WN++I+G   + 
Sbjct: 132 KIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHE 191

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
           +   A+ L   M   G+ P+  T    L ACA +   +LGR +H  ++   +  +  L  
Sbjct: 192 YHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGV 251

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
            LI+MY++C ++  AR +F +M E ++IAW A+ISG+  +    EA  LF  M   G+  
Sbjct: 252 GLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGF 311

Query: 307 NNVTFVAVLSACA-----------HAGLVQEGHR----VFASMRQEYGLLPGVEH----- 346
           N  T   VL + A           HA  ++ G      V  S+   YG    VE      
Sbjct: 312 NQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVF 371

Query: 347 ----------HVCMVDLFGRAGLLNEAYKFVKDVI--GEKPAPAVWTAMLGACKMHKNFD 394
                        +V  + + G   EA +   ++   G KP   V +++L AC     ++
Sbjct: 372 EESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYE 431

Query: 395 LGVEVAEHLL 404
            G +V  H+L
Sbjct: 432 QGKQVHVHIL 441



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 158/284 (55%), Gaps = 5/284 (1%)

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           I  + + F +V+K+C     L LG+ VH  V V+G+DSD  V  +LV  YAK      AR
Sbjct: 6   IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDAR 65

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
            +FD +PD+SVV+WN++ S Y  +    EA+ LF+ M   G+ P+  +   ++  C  L 
Sbjct: 66  SLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLE 125

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           D   GR +H +++  G D +   A +L++MYA+ G +  A  +FD +++ ++++W A+I+
Sbjct: 126 DSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIA 185

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGL 340
           G  +H Y   A+EL   M   G+ PN  T  + L ACA   L + G ++ +S+ + + G 
Sbjct: 186 GCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGS 245

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
              +   V ++D++ +   +++A + V  ++ E+   A W A++
Sbjct: 246 DSFL--GVGLIDMYSKCNSMDDA-RLVFKLMPERDMIA-WNAVI 285


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/557 (42%), Positives = 333/557 (59%), Gaps = 41/557 (7%)

Query: 64  FCIPSPDSFLFNTLI-----IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           F  P+ +SFL+NTLI      R      +   +  + RM    + P  +TF  +++S A 
Sbjct: 17  FSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFAS 76

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR------------ 166
            S+L+LGR+VH  +   G   D  VQ +L++ Y+   N+  AR+VFD             
Sbjct: 77  PSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSI 136

Query: 167 -------------------MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN--- 204
                              MP+++V++W+ MI+GY + G  KEA+ LF  M+  GVN   
Sbjct: 137 INANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVR 196

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T   VLAAC +LG ++ G+W H +I   G+ V+VVL T+LI+MYA+CG+V KA  +
Sbjct: 197 PNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWV 256

Query: 265 F-DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           F ++    +V+AW+AMISG  MHG   E V LF +M   GVRPN VTF+AV  AC H GL
Sbjct: 257 FSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGL 316

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           V EG      M ++Y ++P ++H+ CMVDL+GRAG + EA+  VK +  E P   VW A+
Sbjct: 317 VSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPME-PDVLVWGAL 375

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           L   +MH + +      + L+ +EP N G YV+LSN+YA  GR + V  VR++M   G+K
Sbjct: 376 LSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIK 435

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K  G S +EV    + F +GD SHP T +I+  L+E++ R +  GYV  ++  + +L+EE
Sbjct: 436 KVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEE 495

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
            +E +L  HSEKLALA+G ++TSPG  IRIVKNLR+C DCH AIK IS   +REIIVRD 
Sbjct: 496 GKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDC 555

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFHHF +G CSC DYW
Sbjct: 556 NRFHHFTQGLCSCRDYW 572


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/595 (39%), Positives = 348/595 (58%), Gaps = 36/595 (6%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPD 70
           ++L +G   K ++Q+HA L V G  +   ++ + +  V   D  ++ YA +I      P 
Sbjct: 19  SLLDSGTTFKEIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQILDRSDKPT 78

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSN--ISPSNYTFSAVIKSCAHLSILNLGRAV 128
            F  N++I  + K+     S  FY R++ S   + P NYT + ++++C  L +   G  V
Sbjct: 79  LFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRETGLQV 138

Query: 129 HCHVFVSGYDSDLHVQAALVNFYA-------------------------------KSNNV 157
           H      G+D+D HVQ  L++ YA                               +  +V
Sbjct: 139 HGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDV 198

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
             ARK+F+ MP+K  +AWN+MISGY Q G ++EA+ LF+LM+  GV  +  + + VL+AC
Sbjct: 199 AFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSAC 258

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
            QLG +D GRW H +I    + + V L T+L+++YA+CG++ KA E+F  M E NV  W+
Sbjct: 259 TQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWS 318

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           + ++G  M+G+G + ++LF  M+  GV PN VTFV+VL  C+  G V EG + F SMR E
Sbjct: 319 SALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNE 378

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
           +G+ P ++H+ C+VDL+ RAG L +A   ++  +  K   AVW+++L A +M+KN +LGV
Sbjct: 379 FGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQ-MPMKAHAAVWSSLLHASRMYKNLELGV 437

Query: 398 EVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKN 457
             ++ +L +E  N G YV+LSNIYA +   D V  VR  M  KG++K  G S +EV+ + 
Sbjct: 438 LASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEV 497

Query: 458 YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLA 517
           + F +GDKSHP  NEI     ++  R R AGY  ++   M +++EEE+E +L  HSEK A
Sbjct: 498 HEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAA 557

Query: 518 LAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRG 572
           +AFG+M     + IRIVKNLR+C DCH     IS   NREIIVRDR RFHHFK G
Sbjct: 558 IAFGIMSLKADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 612



 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/488 (39%), Positives = 305/488 (62%), Gaps = 4/488 (0%)

Query: 96   RMIVSNIS--PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153
            RM+ S +   P+  TF ++I +C H      G  +H  V  SG   ++ V  AL+N Y K
Sbjct: 625  RMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGK 684

Query: 154  SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
            + ++  + K+F+ +  K++V+WN+MI  + QNG A+E +  FN+ R  G+ PD  T + V
Sbjct: 685  TGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAV 744

Query: 214  LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
            L  C  +G + L + +H  I+  G + N  + T+L+++YA+ G +  +  +F  ++  + 
Sbjct: 745  LRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDS 804

Query: 274  IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
            +AWTAM++ Y  HGYG +A++ F  M  +G+ P++VTF  +L+AC+H+GLV+EG   F +
Sbjct: 805  MAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFET 864

Query: 334  MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
            M + Y + P ++H+ CMVDL GR+GLL +AY  +K++  E P+  VW A+LGAC+++K+ 
Sbjct: 865  MSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPME-PSSGVWGALLGACRVYKDT 923

Query: 394  DLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEV 453
             LG + A+ L  +EP +  +Y+MLSNIY+ +G       +RN+M QKGL +  GYS +E 
Sbjct: 924  QLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEH 983

Query: 454  DQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR-EAGYVPESESAMHELEEEEREYSLRYH 512
              K + F +GD SHP + +I + L E+  + + E G+   +E  +H+++E+ +E  +  H
Sbjct: 984  GNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQH 1043

Query: 513  SEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRG 572
            SEK+A+AFGL+  SP   I I KNLR+C DCH   K IS+   R II+RD  RFHHF  G
Sbjct: 1044 SEKIAMAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEG 1103

Query: 573  SCSCLDYW 580
            SCSC DYW
Sbjct: 1104 SCSCRDYW 1111



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 153/316 (48%), Gaps = 9/316 (2%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H  ++ +G      ++  L++L    G +  + ++F  +   +   +NT+I+ + +   
Sbjct: 659 IHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGL 718

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
           + + L ++       + P   TF AV++ C  + ++ L + +H  +   G++++  +  A
Sbjct: 719 AEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTA 778

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ YAK   ++ +  VF  +     +AW +M++ Y  +G+ ++AI  F LM  +G++PD
Sbjct: 779 LLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPD 838

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKAREIF 265
             T   +L AC+  G ++ GR+  E +  +  ++  +   + ++++  R G +  A  + 
Sbjct: 839 HVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLI 898

Query: 266 -DMMSELNVIAWTAMISG---YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
            +M  E +   W A++     Y     GT+A +    +     R N +    + SA   +
Sbjct: 899 KEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGR-NYIMLSNIYSA---S 954

Query: 322 GLVQEGHRVFASMRQE 337
           GL ++  R+   M+Q+
Sbjct: 955 GLWKDASRIRNLMKQK 970



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + A+L+    +  +   Q +H  ++  G+  +  + T LL L    G +  +  
Sbjct: 735 KPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSST 794

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  I SPDS  +  ++   +   +  D++  +  M+   +SP + TF+ ++ +C+H  +
Sbjct: 795 VFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGL 854

Query: 122 LNLGR 126
           +  GR
Sbjct: 855 VEEGR 859


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/578 (38%), Positives = 344/578 (59%), Gaps = 4/578 (0%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P++     +LKA  R   ++   ++H+ L+ AGY     + T LLSL         A ++
Sbjct: 112 PNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKV 171

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  IP  +   +  +I     +    +++  +++++   + P +++   V+ +CA L   
Sbjct: 172 FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDC 231

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G  +  ++  SG   ++ V  +L++ Y K  N++ A  +F  MP+K +V+W++MI GY
Sbjct: 232 TSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGY 291

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
             NG  ++A+ LF  M+   + PD  T V VL+ACA LG +DLG W    +       N 
Sbjct: 292 AFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNP 351

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           VL T+LI+MY++CG+V++A EIF  M + + + W AM+ G  M+G+      LF  +  H
Sbjct: 352 VLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKH 411

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+RP+  TF+ +L  C H G V EG + F +M++ + L P +EH+ CMVDL GRAGLLNE
Sbjct: 412 GIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNE 471

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A++ + + +  KP   VW A+LG CK+HK+  L  +V + L+ +EP N G+YV LSNIY+
Sbjct: 472 AHQLINN-MPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYS 530

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
              R +  E +R+ M ++ ++K    S +E+D   + F +GDKSH  + +IY  LDEL  
Sbjct: 531 GNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGR 590

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             +  G+VP +E  + ++EEEE+E+ L YHSEKLA+AFGL+ + P   IR+VKNLR+C D
Sbjct: 591 ELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGD 650

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH AIK IS  T REII+RD  RFH F  GSCSC DYW
Sbjct: 651 CHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 218/394 (55%), Gaps = 12/394 (3%)

Query: 5   QPHSPAYEAILKAGPRL-------KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
            P SP +   L+    L         L+ +HA L+     +   +L  +L    D G   
Sbjct: 6   NPSSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTN 65

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           Y++ +F  +  P+ FL+NT+I      +   D++  Y  M      P+N+T   V+K+CA
Sbjct: 66  YSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACA 125

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
               + LG  +H  +  +GYD D+ V+ +L++ Y K +N D A KVFD +PDK+VV+W +
Sbjct: 126 RKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTA 185

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +I+GY  +G  +EAIG F  + + G+ PDS + V VLAACA+LGD   G W+  +I   G
Sbjct: 186 IITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSG 245

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           +  NV +ATSL++MY +CGN+ +A  IF  M E ++++W+ MI GY  +G   +A++LF 
Sbjct: 246 MGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFF 305

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGR 356
           +M++  ++P+  T V VLSACA  G +  G    + M R E+   P +     ++D++ +
Sbjct: 306 QMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVL--GTALIDMYSK 363

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            G + +A++    +  +K    VW AM+    M+
Sbjct: 364 CGSVTQAWEIFTAM--KKKDRVVWNAMMVGLSMN 395


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/576 (39%), Positives = 355/576 (61%), Gaps = 5/576 (0%)

Query: 8   SPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           S  Y+A++ A   LK +   ++V  ++I +G      +  ++L +    G +  A+R+F 
Sbjct: 131 SETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFD 190

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            +P  +   +NT+I     A    ++   +  M        +  F  +I++ A L ++  
Sbjct: 191 EMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFA 250

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           GR +H     +G   D+ V  AL++ Y+K  +++ A+ VFD+MP+K+ V WNS+I+GY  
Sbjct: 251 GRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYAL 310

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           +G+++EA+ ++  MRD GV  D+ T   ++  CA+L  ++  +  H  +V  G  +++V 
Sbjct: 311 HGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVA 370

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
            T+L+++Y++ G +  A+ +FDMM   NVI+W A+I+GYG HG G EAVE+F RM   G+
Sbjct: 371 NTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGM 430

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
            PN+VTF+AVLSAC+++GL   G  +F SM +++ + P   H+ CM++L GR GLL+EA+
Sbjct: 431 VPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAF 490

Query: 365 KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
             +KD    KP   +W A+L AC++HKNF+LG   AE L  + PE   +YV+L NIY  +
Sbjct: 491 ALIKDA-PFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRS 549

Query: 425 GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRC 484
           GR++    V   + ++GL+     S +E+ ++ Y F  GDK H  + EIYQ LDELM   
Sbjct: 550 GRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEI 609

Query: 485 REAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
            + GYVP+ +  + +++E+E E  L YHSEKLA+AFGL+ TS    ++IV++ R+C DCH
Sbjct: 610 SKHGYVPQDKFLLPDVDEQE-ERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCH 668

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           SAIK I++ T REI+VRD  RFHHFK GSCSC DYW
Sbjct: 669 SAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 4/202 (1%)

Query: 190 EAIGLFNLMRDFGV-NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
           EA+ LF ++   G  + DS T   +++AC  L  I   + V  +++  GLD +  L   +
Sbjct: 113 EALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRV 172

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           + M+ +CG +  AR +FD M E N+++W  +I G    G   EA  LF  M        +
Sbjct: 173 LLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGS 232

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
             FV ++ A A  GL+  G R   S   + G+   V     ++D++ + G + +A + V 
Sbjct: 233 RMFVTMIRASAGLGLIFAG-RQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDA-QCVF 290

Query: 369 DVIGEKPAPAVWTAMLGACKMH 390
           D + EK     W +++    +H
Sbjct: 291 DQMPEKTTVG-WNSIIAGYALH 311


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/601 (38%), Positives = 364/601 (60%), Gaps = 25/601 (4%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           KN   + P  + + +       L+Q+H  +I  G       L+ L+ +      + YA +
Sbjct: 143 KNHIFNHPTLQTLQQKCNNFNTLKQIHTQIITTGLSFQTYCLSHLIKISSKFN-LPYAFK 201

Query: 62  IFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSC- 116
           IF  I +P  FL+NTLI   I  +  N    +   Y +++ + N+ P+++TF ++ K+C 
Sbjct: 202 IFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACC 261

Query: 117 AHLSILNLGRAVHCHV--FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           ++ S  + G  +H HV  F+     D  VQA+L+NFYAK   + V+R +FDR+ +  +  
Sbjct: 262 SNQSWFHYGPLLHTHVLKFLQP-PFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLAT 320

Query: 175 WNSMISGY-------------EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           WN +++ Y             +   F+ E++ LF  M+  G+ P+  T V +++AC+ LG
Sbjct: 321 WNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLG 380

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--LNVIAWTAM 279
            +  G WVH F++   + +N  + T+ ++MY++CG ++ A ++FD M E   +   +TAM
Sbjct: 381 AVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAM 440

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           I G+ +HGYG +A+EL+ +M+  G+ P++ TFV  + AC+H GLV+EG  +F SM++ +G
Sbjct: 441 IGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHG 500

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           + P +EH+ C++DL GRAG L EA +++ D +  KP   +W ++LGA ++H N  +G   
Sbjct: 501 VEPKLEHYGCLIDLLGRAGRLKEAEEWLAD-MPMKPNAVLWRSLLGAARIHGNLGVGEVA 559

Query: 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYL 459
              L+ +EPE  G+YV+LSN+YA  GR++ V+ VR +M   G+ K  G+S VE+    + 
Sbjct: 560 LTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHE 619

Query: 460 FSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALA 519
           F  GD+SHP + EIY  + E+  R  E G+   +  A+ +LEEE++E  L YHSE+LA+A
Sbjct: 620 FLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERLAIA 679

Query: 520 FGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           F L+ +   + IRI+KNLR+C DCH+  K ISVA +REIIVRDR RFHHFK GSCSCLDY
Sbjct: 680 FALIASPSSLAIRIIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSCLDY 739

Query: 580 W 580
           W
Sbjct: 740 W 740


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/578 (38%), Positives = 343/578 (59%), Gaps = 4/578 (0%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P++     +LKA  R   ++   ++H+ L+ AGY     + T LLSL         A ++
Sbjct: 112 PNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKV 171

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  IP  +   +  +I     +    +++  +++++   + P +++   V+ +CA L   
Sbjct: 172 FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDC 231

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G  +  ++  SG   ++ V  +L++ Y K  N++ A  +F  MP+K +V+W++MI GY
Sbjct: 232 TSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGY 291

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
             NG  ++A+ LF  M+   + PD  T V VL+ACA LG +DLG W    +       N 
Sbjct: 292 AFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNP 351

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           VL T+LI+MY++CG+V++A EIF  M   + + W AM+ G  M+G+      LF  +  H
Sbjct: 352 VLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKH 411

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+RP+  TF+ +L  C H G V EG + F +M++ + L P +EH+ CMVDL GRAGLLNE
Sbjct: 412 GIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNE 471

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A++ + + +  KP   VW A+LG CK+HK+  L  +V + L+ +EP N G+YV LSNIY+
Sbjct: 472 AHQLINN-MPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYS 530

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
              R +  E +R+ M ++ ++K    S +E+D   + F +GDKSH  + +IY  LDEL  
Sbjct: 531 GNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGR 590

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             +  G+VP +E  + ++EEEE+E+ L YHSEKLA+AFGL+ + P   IR+VKNLR+C D
Sbjct: 591 ELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGD 650

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH AIK IS  T REII+RD  RFH F  GSCSC DYW
Sbjct: 651 CHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 131/393 (33%), Positives = 218/393 (55%), Gaps = 12/393 (3%)

Query: 6   PHSPAYEAILKAGPRL-------KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           P SP +   L+    L         L+ +HA L+     +   +L  +L    D G   Y
Sbjct: 7   PTSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNY 66

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           ++ +F  +  P+ FL+NT+I      +   D++  Y  M      P+N+T   V+K+CA 
Sbjct: 67  SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACAR 126

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
              + LG  +H  +  +GYD D+ V+ +L++ Y K +N D A KVFD +PDK+VV+W ++
Sbjct: 127 KLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           I+GY  +G  +EAIG F  + + G+ PDS + V VLAACA+LGD   G W+  +I   G+
Sbjct: 187 ITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             NV +ATSL++MY +CGN+ +A  IF  M E ++++W+ MI GY  +G   +A++LF +
Sbjct: 247 GRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRA 357
           M++  ++P+  T V VLSACA  G +  G    + M R E+   P +     ++D++ + 
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVL--GTALIDMYSKC 364

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           G + +A++    +  ++    VW AM+    M+
Sbjct: 365 GSVTQAWEIFTAM--KRKDRVVWNAMMVGLSMN 395



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 171/358 (47%), Gaps = 24/358 (6%)

Query: 103 SPSNYTFSAVIKSCAHLS----ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158
           SP++  FS  ++   +LS      N  + +H  +     D D ++   ++       + +
Sbjct: 6   SPTSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTN 65

Query: 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
            ++ VF ++ + ++  WN+MI G        +AI L+  MR  G  P++ T   VL ACA
Sbjct: 66  YSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACA 125

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
           +  D+ LG  +H  +V  G D +V + TSL+++Y +C N   A ++FD + + NV++WTA
Sbjct: 126 RKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTA 185

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           +I+GY   G+  EA+  F ++   G++P++ + V VL+ACA  G    G  +   +  + 
Sbjct: 186 IITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYI-SDS 244

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
           G+   V     ++D++ + G L  A   +   + EK   + W+ M+     +    L  +
Sbjct: 245 GMGRNVFVATSLLDMYVKCGNLERA-NLIFSAMPEKDIVS-WSTMIQGYAFN---GLPQQ 299

Query: 399 VAEHLLSVEPEN--PGHYVMLSNIYALA------------GRMDRVEVVRNIMIQKGL 442
             +    ++ EN  P  Y M+  + A A              MDR E + N ++   L
Sbjct: 300 ALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTAL 357


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/562 (40%), Positives = 340/562 (60%), Gaps = 6/562 (1%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFI---TYAQRIFFCIPSPDSFLFNTLIIR 80
           L Q+HAH+I     +  ++  + LS +  +G +   +Y+QR F  +  P    +NT+I  
Sbjct: 19  LLQIHAHIIRTTLIQYPTVSLQFLSRIALSGPLQDASYSQRFFGQLSHPLVSHYNTMIRA 78

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            S ++     LL YR M    I+    + S  +KSC     L  G  VHC++F  G+  D
Sbjct: 79  CSMSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFLYLPGGVQVHCNIFKDGHQWD 138

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR- 199
             +  A+++ Y+       A KVFD MP +  VAWN MIS   +N   ++A+ LF++M+ 
Sbjct: 139 TLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQG 198

Query: 200 -DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
             +   PD  TC+ +L ACA L  ++ G  +H +I+ +G    + L  SLI+MY+RCG +
Sbjct: 199 SSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDALNLCNSLISMYSRCGCL 258

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
            KA E+F  M   NV++W+AMISG  M+GYG EA+E F  M   GV P++ TF  VLSAC
Sbjct: 259 DKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSAC 318

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           +++G+V EG   F  M +E+G+ P V H+ CMVDL GRAGLL++AY+ +  ++  KP   
Sbjct: 319 SYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMV-VKPDST 377

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
           +W  +LGAC++H +  LG  V  HL+ ++ +  G YV+L NIY+ AG  ++V  VR +M 
Sbjct: 378 MWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMK 437

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
            K ++   G ST+E+    + F + D SH    EIY+ LDE+  + R AGYV E  S +H
Sbjct: 438 NKSIQTTPGCSTIELKGAVHEFVVDDVSHSRNREIYETLDEINHQLRIAGYVVELSSELH 497

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
           +++++E+ Y L +HSEKLA+AFG++ T PG  +R+  NLR+CVDCH+ +K  S   NR++
Sbjct: 498 KMDDKEKGYVLSHHSEKLAVAFGVLATPPGTILRVASNLRVCVDCHNFLKLFSGVYNRDV 557

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           ++RD  RFHHF+ G CSC DYW
Sbjct: 558 VLRDHNRFHHFRGGRCSCSDYW 579


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/436 (46%), Positives = 284/436 (65%), Gaps = 1/436 (0%)

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            A++  YAK   +D AR +FD M ++  V WN MI GY QNG   EA+ LF  M      
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK 187

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T + VL+AC QLG ++ GRWVH +I   G+  NV + T+L++MY++CG++  AR +
Sbjct: 188 PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLV 247

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD + + +V+AW +MI GY MHG+  EA++LF  M   G+ P N+TF+ +LSAC H+G V
Sbjct: 248 FDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWV 307

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG  +F  M+ EYG+ P +EH+ CMV+L GRAG + +AY+ VK++  E P P +W  +L
Sbjct: 308 TEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIE-PDPVLWGTLL 366

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GAC++H    LG ++ E L+     N G Y++LSNIYA  G  D V  +R +M   G+KK
Sbjct: 367 GACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKK 426

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S++EV+ K + F  G  +HP   EIY  L+E+ G  +  GY P+++  +H++ E E
Sbjct: 427 EPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETE 486

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E SL  HSEKLA+AFGL+ T PG TI+IVKNLR+C DCH   K IS  T R+I+VRDR 
Sbjct: 487 KERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRN 546

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF  GSCSC DYW
Sbjct: 547 RFHHFVNGSCSCGDYW 562



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 143/264 (54%), Gaps = 5/264 (1%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           +S   LT +L+     G +  A+ +F  +   D   +N +I   ++     ++L+ +RRM
Sbjct: 122 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 181

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
           + +   P+  T  +V+ +C  L  L  GR VH ++  +G   ++HV  ALV+ Y+K  ++
Sbjct: 182 LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSL 241

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
           + AR VFD++ DK VVAWNSMI GY  +GF++EA+ LF  M   G++P + T + +L+AC
Sbjct: 242 EDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSAC 301

Query: 218 AQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIA 275
              G +  G  +   +  + G++  +     ++N+  R G+V +A E+   M+ E + + 
Sbjct: 302 GHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVL 361

Query: 276 WTAMISGYGMHG---YGTEAVELF 296
           W  ++    +HG    G + VEL 
Sbjct: 362 WGTLLGACRLHGKIALGEKIVELL 385



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 113/263 (42%), Gaps = 42/263 (15%)

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H  +F  G D    +   L   YA    +D +  +F R  + SV  W ++I G+   G 
Sbjct: 49  IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGD 108

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
              A  LF+ M      P+ +                                 +V  T+
Sbjct: 109 VVSAQQLFDTM------PEKS---------------------------------LVSLTA 129

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           ++  YA+ G +  AR +FD M E + + W  MI GY  +G   EA+ LF RM     +PN
Sbjct: 130 MLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPN 189

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            VT ++VLSAC   G ++ G R   S  +  G+   V     +VD++ + G L +A + V
Sbjct: 190 EVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDA-RLV 247

Query: 368 KDVIGEKPAPAVWTAMLGACKMH 390
            D I +K   A W +M+    MH
Sbjct: 248 FDKIDDKDVVA-WNSMIVGYAMH 269



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 113/277 (40%), Gaps = 47/277 (16%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+     ++L A  +L  L+    VH+++   G   +  + T L+ +    G +  A+ 
Sbjct: 187 KPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARL 246

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  I   D   +N++I+  +   FS ++L  ++ M    + P+N TF  ++ +C H   
Sbjct: 247 VFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGH--- 303

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK-----SVVAWN 176
                        SG+                   V     +F++M D+      +  + 
Sbjct: 304 -------------SGW-------------------VTEGWDIFNKMKDEYGIEPKIEHYG 331

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
            M++   + G  ++A   + L+++  + PD      +L AC   G I LG  + E +V Q
Sbjct: 332 CMVNLLGRAGHVEQA---YELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQ 388

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
            L  N      L N+YA  GN      +  MM +  V
Sbjct: 389 NL-ANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGV 424


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/558 (39%), Positives = 351/558 (62%), Gaps = 5/558 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H + +  G      +   L+ +    G +T A  +F  +   D   +N++I  N +   
Sbjct: 190 MHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGK 249

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLHVQA 145
              ++  +  M+ S + P   T  ++  + A        ++VHC+V   G+D  D+    
Sbjct: 250 VAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGN 309

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVN 204
           A+V+ YAK + +D A+KVFD +PD+ VV+WN++I+GY QNG A EAI ++N M +  G+ 
Sbjct: 310 AMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLK 369

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P   T V VL A + LG +  G  +H   +  GL+++V + T LI++YA+CG + +A  +
Sbjct: 370 PIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFL 429

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ M   +   W A+I+G G+HG+G +A+ LF +M+   ++P++VTFV++L+AC+HAGLV
Sbjct: 430 FEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLV 489

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            +G   F  M+  YG++P  +H+ CMVD+ GRAG L+EA++F++  +  KP  AVW A+L
Sbjct: 490 DQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQS-MPIKPDSAVWGALL 548

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GAC++H N ++G   +++L  ++PEN G+YV++SN+YA  G+ D V+ VR+++ ++ L+K
Sbjct: 549 GACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQK 608

Query: 445 HVGYSTVEVDQKNYLFSMGDKS--HPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
             G+S++EV     +F  G ++  HP   EI + L +L+ + + AGYVP+    + ++EE
Sbjct: 609 TPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEE 668

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           +E+E  L  HSE+LA+AFG++ T PG  + I KNLR+C DCHSA K+IS  T REIIVRD
Sbjct: 669 DEKEQILNNHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRD 728

Query: 563 RLRFHHFKRGSCSCLDYW 580
             RFHHFK G CSC D+W
Sbjct: 729 ANRFHHFKDGHCSCGDFW 746



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 197/392 (50%), Gaps = 12/392 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLT-KLLSLVCDAGFITYAQRIF 63
           +P S  +  +++A P      Q+HA  +  G        +  L+      G +  A R+F
Sbjct: 66  RPDSFTFPPLVRAAPGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVF 125

Query: 64  FCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
             +P  D   +N ++    RN++A    D++    RM+   ++    T S+V+  C  L 
Sbjct: 126 DEMPERDVPAWNAMLSGLCRNTRA---ADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLG 182

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
              L   +H +    G   +L V  AL++ Y K   +  A  VF  M  + +V WNS+IS
Sbjct: 183 DRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIIS 242

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
             EQ G    A+ LF+ M + GV PD  T V + +A AQ GD    + VH ++  +G DV
Sbjct: 243 ANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDV 302

Query: 241 -NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            +++   ++++MYA+   +  A+++FD + + +V++W  +I+GY  +G   EA+ +++ M
Sbjct: 303 GDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDM 362

Query: 300 RAH-GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
             H G++P   TFV+VL A ++ G +Q+G R+ A +  + GL   V    C++DL+ + G
Sbjct: 363 HNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHA-LSIKTGLNLDVYVTTCLIDLYAKCG 421

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            L EA    + +      P  W A++    +H
Sbjct: 422 KLVEAMFLFEHMPRRSTGP--WNAIIAGLGVH 451



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 172/363 (47%), Gaps = 22/363 (6%)

Query: 102 ISPSNYTFSAVIKSCA--------HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153
           + P ++TF  ++++          H   L LG  +H +VF SG         +LV+ Y +
Sbjct: 65  LRPDSFTFPPLVRAAPGPASAAQLHACALRLG-LLHPNVFASG---------SLVHAYLR 114

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
              V  A +VFD MP++ V AWN+M+SG  +N  A +A+ L   M   GV  D+ T   V
Sbjct: 115 FGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSV 174

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           L  C  LGD  L   +H + V  GL   + +  +LI++Y + G +++A  +F  M+  ++
Sbjct: 175 LPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDL 234

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
           + W ++IS     G    AVELFH M   GV P+ +T V++ SA A  G       V   
Sbjct: 235 VTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCY 294

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
           +R+    +  +     MVD++ +   ++ A K V D + ++   + W  ++     +   
Sbjct: 295 VRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQK-VFDNLPDRDVVS-WNTLITGYMQNGLA 352

Query: 394 DLGVEVAEHLLSVEPENP--GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTV 451
           +  + +   + + E   P  G +V +   Y+  G + +   +  + I+ GL   V  +T 
Sbjct: 353 NEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTC 412

Query: 452 EVD 454
            +D
Sbjct: 413 LID 415



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 110/281 (39%), Gaps = 40/281 (14%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + ++L A   L  LQQ   +HA  I  G      + T L+ L    G +  A  
Sbjct: 369 KPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMF 428

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P   +  +N +I           +L  + +M    I P + TF +++ +C+H  +
Sbjct: 429 LFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGL 488

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           ++ GR+                      F+      D+ + V+  +P      +  M+  
Sbjct: 489 VDQGRS----------------------FF------DLMQTVYGIVPIAK--HYTCMVDM 518

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             + G   EA   F  ++   + PDS     +L AC   G++++G+   + +     + N
Sbjct: 519 LGRAGQLDEA---FEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPE-N 574

Query: 242 VVLATSLINMYARCG---NVSKAREIFDMMSELNVIAWTAM 279
           V     + NMYA+ G    V   R +    +      W++M
Sbjct: 575 VGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSM 615


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/530 (41%), Positives = 331/530 (62%), Gaps = 5/530 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAV 112
           G     ++IF  + + D   +  +I    +A    ++L+ +++M     +   +    +V
Sbjct: 6   GLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSV 65

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
             +   L  +     VH + F      +L V  +++  + K  N + AR VFD M ++ V
Sbjct: 66  ASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDV 125

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           ++WNSM+SGY QNG A EA+ LF+ MRD    P   T + +++ACA LG   LGR  H+F
Sbjct: 126 ISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDF 185

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM--SELNVIAWTAMISGYGMHGYGT 290
           IV   ++++  L+ +L++MYA+CG++ KA ++F+ +  +E N  +W  +ISGYGMHG+G 
Sbjct: 186 IVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGK 245

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350
           EA+ELF RM+  GV PN+ TF ++LSAC+HAGL+ EG + FA M++    L   +HH C+
Sbjct: 246 EALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLED-KHHACV 304

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410
           VD+ GRAGLL EA+  +K+ +   P+  VW A+L ACK+H N +LG   A +LL +EP +
Sbjct: 305 VDMLGRAGLLQEAFDLIKE-MPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQLEPNH 363

Query: 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNT 470
            G+YV++SNIYA + +   V  +R  M  KGLKK   +S +E  +    F   D+ +P  
Sbjct: 364 TGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQENPYR 423

Query: 471 NEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT 530
           +E+Y+ ++ L    + AGYVP+   A+H++EEE++E  L YHSEKLA+AFG+++  PGM 
Sbjct: 424 HEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLKIDPGMV 483

Query: 531 IRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           IR+ KNLR+C DCHSA K+IS    R+IIVRD  RFHHF+ G+CSC DYW
Sbjct: 484 IRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 140/285 (49%), Gaps = 9/285 (3%)

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM-RDFGVNPDST 208
            YAK       RK+FD M  K +V W +MI+ YEQ    +EA+ LF  M ++ G+  DS 
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
             V V +A  QLGD+     VH +   + L   + +  S++ M+ +CGN  KAR +FDMM
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM 120

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
            E +VI+W +M+SGY  +G  TEA+ LF  MR    +P  VT + ++SACA+ G    G 
Sbjct: 121 MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLG- 179

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
           R F     +  +         ++D++ + G L +A      +   +     W  ++    
Sbjct: 180 RKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYG 239

Query: 389 MHKNFDLGVEVAEHLLSVEPE--NPGHYVMLSNIYAL--AGRMDR 429
           MH +   G E  E    ++ E   P H+   S + A   AG +D 
Sbjct: 240 MHGH---GKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDE 281



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 144/287 (50%), Gaps = 15/287 (5%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKL------LSLVCDAGFITYAQRIFFCI 66
           A++     +  L  V     V GY   +S++ +L      L++    G    A+ +F  +
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM 120

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
              D   +N+++   ++   +T++LL +  M  S+  P+  T   ++ +CA+L   +LGR
Sbjct: 121 MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGR 180

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNSMISGYEQ 184
             H  +  S  + D ++  AL++ YAK  +++ A  +F+ +P  +++  +WN +ISGY  
Sbjct: 181 KFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGM 240

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           +G  KEA+ LF+ M++ GV P+  T   +L+AC+  G ID GR     +    + +    
Sbjct: 241 HGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKH 300

Query: 245 ATSLINMYARCGNVSKAREIFDMMSEL----NVIAWTAMISGYGMHG 287
              +++M  R G +   +E FD++ E+    +   W A++    +HG
Sbjct: 301 HACVVDMLGRAGLL---QEAFDLIKEMPSPPSDGVWGALLLACKIHG 344


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/576 (39%), Positives = 355/576 (61%), Gaps = 5/576 (0%)

Query: 8   SPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           S  Y+A++ A   LK +   ++V  ++I +G      +  ++L +    G +  A+R+F 
Sbjct: 131 SETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFD 190

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            +P  +   +NT+I     A    ++   +  M        +  F  +I++ A L ++  
Sbjct: 191 EMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGLIFA 250

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           GR +H     +G   D+ V  AL++ Y+K  +++ A+ VFD+MP+K+ V WNS+I+GY  
Sbjct: 251 GRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYAL 310

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           +G+++EA+ ++  MRD GV  D+ T   ++  CA+L  ++  +  H  +V  G  +++V 
Sbjct: 311 HGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVA 370

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
            T+L+++Y++ G +  A+ +FDMM   NVI+W A+I+GYG HG G EAVE+F RM   G+
Sbjct: 371 NTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGM 430

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
            PN+VTF+AVLSAC+++GL   G  +F SM +++ + P   H+ CM++L GR GLL+EA+
Sbjct: 431 VPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAF 490

Query: 365 KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
             +KD    KP   +W A+L AC++HKNF+LG   AE L  + PE   +YV+L NIY  +
Sbjct: 491 ALIKDA-PFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXS 549

Query: 425 GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRC 484
           GR++    V   + ++GL+     S +E+ ++ Y F  GDK H  + EIYQ LDELM   
Sbjct: 550 GRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEI 609

Query: 485 REAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
            + GYVP+ +  + +++E+E E  L YHSEKLA+AFGL+ TS    ++IV++ R+C DCH
Sbjct: 610 SKHGYVPQXKFLLPDVDEQE-ERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCH 668

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           SAIK I++ T REI+VRD  RFHHFK GSCSC DYW
Sbjct: 669 SAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 4/202 (1%)

Query: 190 EAIGLFNLMRDFGV-NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
           EA+ LF ++   G  + DS T   +++AC  L  I   + V  +++  GLD +  L   +
Sbjct: 113 EALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRV 172

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           + M+ +CG +  AR +FD M E N+++W  +I G    G   EA  LF  M        +
Sbjct: 173 LLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGS 232

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
             FV ++ A A  GL+  G R   S   + G+   V     ++D++ + G + +A + V 
Sbjct: 233 RMFVTMIRASAGLGLIFAG-RQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDA-QCVF 290

Query: 369 DVIGEKPAPAVWTAMLGACKMH 390
           D + EK     W +++    +H
Sbjct: 291 DQMPEKTTVG-WNSIIAGYALH 311


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/581 (39%), Positives = 345/581 (59%), Gaps = 12/581 (2%)

Query: 5   QPHSPAYEAILKAGPRLK-PL--QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
            P + ++  ILK+   L  P+  QQ+H H+   G      +LT L+S+ C  G +  A++
Sbjct: 50  SPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARK 109

Query: 62  IFFCIP--SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           +F   P  S  S  +N LI   +  +  TD+   +RRM  + +S  + T   ++  C   
Sbjct: 110 VFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVP 169

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             L LGR++H      G DS++ V  + +  Y K  +V+  R++FD MP K ++ WN++I
Sbjct: 170 EYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVI 229

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           SGY QNG A + + L+  M+  GV PD  T V VL++CA LG   +G  V + +   G  
Sbjct: 230 SGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFV 289

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            NV ++ + I+MYARCGN++KAR +FD+M   ++++WTAMI  YGMHG G   + LF  M
Sbjct: 290 PNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDM 349

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
              G+RP+   FV VLSAC+H+GL  +G  +F +M++EY L PG EH+ C+VDL GRAG 
Sbjct: 350 IKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGR 409

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L+EA +F++ +  E P  AVW A+LGACK+HKN D+       ++  EP N G+YV++SN
Sbjct: 410 LDEAMEFIESMPVE-PDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSN 468

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           IY+ +   + +  +R +M ++  +K  GYS VE   + +LF  GD+SH  T E+++ LDE
Sbjct: 469 IYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDE 528

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           L         V E    M     EE   + R HSE+LA+AFG++ + PG  I ++KNLR+
Sbjct: 529 L------ETSVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRV 582

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCH  +K +S   +R+ +VRD  RFH+FK G CSC DYW
Sbjct: 583 CEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 192/346 (55%), Gaps = 8/346 (2%)

Query: 88  TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL 147
           ++S+  YR M+ S  SP  ++F  ++KSCA LS+   G+ +HCHV   G +++  V  AL
Sbjct: 35  SESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTAL 94

Query: 148 VNFYAKSNNVDVARKVFDRMPDKS--VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           ++ Y K   V  ARKVF+  P  S   V +N++ISGY  N    +A  +F  M++ GV+ 
Sbjct: 95  ISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSV 154

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           DS T + ++  C     + LGR +H   V  GLD  V +  S I MY +CG+V   R +F
Sbjct: 155 DSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLF 214

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D M    +I W A+ISGY  +G   + +EL+ +M++ GV P+  T V+VLS+CAH G  +
Sbjct: 215 DEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKK 274

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            GH V   + +  G +P V      + ++ R G L +A + V D++  K   + WTAM+G
Sbjct: 275 IGHEV-GKLVESNGFVPNVFVSNASISMYARCGNLAKA-RAVFDIMPVKSLVS-WTAMIG 331

Query: 386 ACKMHKNFDLGVEVAEHLL--SVEPENPGHYVMLSNIYALAGRMDR 429
              MH   ++G+ + + ++   + P+    +VM+ +  + +G  D+
Sbjct: 332 CYGMHGMGEIGLMLFDDMIKRGIRPDG-AVFVMVLSACSHSGLTDK 376



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 4/148 (2%)

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           WN  +          E+I L+  M   G +PD+ +   +L +CA L     G+ +H  + 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFD---MMSELNVIAWTAMISGYGMHGYGTE 291
             G +    + T+LI+MY +CG V+ AR++F+     S+L+V  + A+ISGY  +   T+
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSV-CYNALISGYTANSKVTD 139

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACA 319
           A  +F RM+  GV  ++VT + ++  C 
Sbjct: 140 AAYMFRRMKETGVSVDSVTMLGLVPLCT 167


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/592 (39%), Positives = 338/592 (57%), Gaps = 37/592 (6%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP--SPDSFLFNTLIIRNS 82
           + VH   I   +G    +L  L+      G +  A  +F  I   + D   +N+++    
Sbjct: 260 KAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFV 319

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV---------- 132
           +  +   +L  + RM    + P+  T  +V+ +CA    L LGR V  ++          
Sbjct: 320 QGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLN 379

Query: 133 ---------------------FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
                                F +    D+     +++ YAK +   +AR +FD MP K 
Sbjct: 380 VCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKD 439

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMR--DFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           + AWN +ISGYEQ+G  KEA+ +F  ++    G  PD  T +  L+ACAQLG +D+G W+
Sbjct: 440 IPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWI 499

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           H +I  + + +N  LATSLI+MY++ G+V KA E+F  +   +V  W+AMI+G  MHG G
Sbjct: 500 HGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRG 559

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
             A+ELF  M+   V+PN+VTF  +L AC+H+GLV EG R+F  M + YG++P  +H+ C
Sbjct: 560 EAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSC 619

Query: 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
           MVD+ GRAG L EA KF++  +   P+ +VW A+LGAC +H N +L  +    LL +EP 
Sbjct: 620 MVDVLGRAGHLEEALKFIEG-MPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPG 678

Query: 410 NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPN 469
           N G YV+LSN+YA  G  + V  +R  M   GLKK  G S++E+D   + F +GD +HP 
Sbjct: 679 NHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPL 738

Query: 470 TNEIYQYLDELMGRCREAGYVPESESAMHELEEEE-REYSLRYHSEKLALAFGLMRTSPG 528
           + +IY  LDE+M R R  GYV  +   +  +EEEE +E +L+ HSEK+A+AFGL+R    
Sbjct: 739 SRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQ 798

Query: 529 MTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             IRIVKNLR+C DCH+  K +S    R+I++RDR RFHHF  G CSC DYW
Sbjct: 799 QAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 220/425 (51%), Gaps = 41/425 (9%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPD 70
           A+ +     K L+Q+HA ++           ++L +    + F  + YA+++F  IP P+
Sbjct: 144 ALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPN 203

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
            + +N LI   + ++    S+L + RM+  S   P+ +TF  +IK+ A      +G+AVH
Sbjct: 204 LYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVH 263

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNSMISGYEQNGF 187
                + +  D+ V  +L++FYA   ++D+A  VF+ +   +K +V+WNSM++G+ Q G+
Sbjct: 264 GMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGY 323

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
             +A+ LF  MR+ GV+P++ T V V++ACA+  ++ LGR V ++I    + +N+ +  +
Sbjct: 324 PDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNA 383

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTA----------------------------- 278
            I+M+ +CG V  AR +FD M + +V++WT                              
Sbjct: 384 TIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAW 443

Query: 279 --MISGYGMHGYGTEAVELFHRMR--AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
             +ISGY   G   EA+ +F  ++    G RP+ VT ++ LSACA  G +  G  +   +
Sbjct: 444 NVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYI 503

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
           ++E   L        ++D++ ++G + +A + V   IG K    VW+AM+    MH   +
Sbjct: 504 KKERIQL-NRNLATSLIDMYSKSGDVEKAIE-VFHSIGNKDV-FVWSAMIAGLAMHGRGE 560

Query: 395 LGVEV 399
             +E+
Sbjct: 561 AAIEL 565


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 351/587 (59%), Gaps = 32/587 (5%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI------ 78
           +Q+H H++  G+     + + L+ +    G I+ A+++F  +P  +  ++NTLI      
Sbjct: 163 RQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRC 222

Query: 79  --IRNSKANF-----------------------STDSLLFYRRMIVSNISPSNYTFSAVI 113
             + +SK  F                         D++  +R M + N+    YTF +V+
Sbjct: 223 GRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVL 282

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
            +C  +  L  G+ VH ++  + Y  ++ V +ALV+ Y K  N+  A  VF +M  K+VV
Sbjct: 283 TACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVV 342

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           +W +M+ GY QNG+++EA+  F+ M+ +G+ PD  T   V+++CA L  ++ G   H   
Sbjct: 343 SWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARA 402

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  GL   + ++ +L+ +Y +CG++  +  +F+ +S  + + WTA++SGY   G   E +
Sbjct: 403 LTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETI 462

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
            LF  M AHG++P+ VTF+ VLSAC+ AGLV++G+++F SM  E+G++P  +H+ CM+DL
Sbjct: 463 GLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDL 522

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
           F RAG + EA  F+ + +   P    W  +L +C+ + N D+G   AE L+ ++P N   
Sbjct: 523 FSRAGRIEEARNFI-NKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTAS 581

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+LS++YA  G+ + V  +R  M  KGL+K  G S ++   + ++FS  DKS+P +++I
Sbjct: 582 YVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQI 641

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           Y  L++L  +  + GYVP+  S +H++ + E+   L +HSEKLA+AFGL+   PG+ IR+
Sbjct: 642 YSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRV 701

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           VKNLR+C DCH+A K+IS  TNREI+VRD  RFH FK G+CSC D+W
Sbjct: 702 VKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 230/512 (44%), Gaps = 100/512 (19%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + +H+H+I         +L  L+S     G I YA ++F  +P P+ + +NT++   SK 
Sbjct: 29  KNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKL 88

Query: 85  N-----------------FSTDSL--------LFYRRMIVSNISPSN--------YTFSA 111
                              S +SL        L Y+ +   N+   N         TFS 
Sbjct: 89  GRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFST 148

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           ++   +    + LGR +H HV   G+ S + V + LV+ Y+K   +  ARKVFD +P+K+
Sbjct: 149 LLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKN 208

Query: 172 VV-------------------------------AWNSMISGYEQNGFAKEAIGLFNLMRD 200
           VV                               +W SMI+G+ QNG  ++AI +F  M+ 
Sbjct: 209 VVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKL 268

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
             +  D  T   VL AC  +  +  G+ VH +I+      N+ +A++L++MY +C N+  
Sbjct: 269 ENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKS 328

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A  +F  M+  NV++WTAM+ GYG +GY  EAV+ F  M+ +G+ P++ T  +V+S+CA+
Sbjct: 329 AEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCAN 388

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI--------- 371
              ++EG + F +     GL+  +     +V L+G+ G + ++++   ++          
Sbjct: 389 LASLEEGAQ-FHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTA 447

Query: 372 ------------------------GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
                                   G KP    +  +L AC      + G ++ E +++  
Sbjct: 448 LVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEH 507

Query: 408 PENP--GHYVMLSNIYALAGRMDRVEVVRNIM 437
              P   HY  + ++++ AGR++      N M
Sbjct: 508 GIVPIQDHYTCMIDLFSRAGRIEEARNFINKM 539



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 168/345 (48%), Gaps = 12/345 (3%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           ++N Q     + ++L A   +  LQ   QVHA++I   Y  +  + + L+ + C    I 
Sbjct: 268 LENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIK 327

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A+ +F  +   +   +  +++   +  +S +++  +  M    I P ++T  +VI SCA
Sbjct: 328 SAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCA 387

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
           +L+ L  G   H     SG  S + V  ALV  Y K  +++ + ++F+ +  K  V W +
Sbjct: 388 NLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTA 447

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ- 236
           ++SGY Q G A E IGLF  M   G+ PD  T + VL+AC++ G ++ G  + E ++ + 
Sbjct: 448 LVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEH 507

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISG---YGMHGYGTEA 292
           G+       T +I++++R G + +AR   + M    + I+W  ++S    YG    G  A
Sbjct: 508 GIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWA 567

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
            E    +  H    N  ++V + S  A  G  +E  R+   MR +
Sbjct: 568 AEFLMELDPH----NTASYVLLSSVYAAKGKWEEVARLRKDMRDK 608


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/429 (47%), Positives = 289/429 (67%), Gaps = 1/429 (0%)

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
           AK +++   R+VFD M  K +++WN+M++ Y  N F  +A+ LF LM    V PDS T  
Sbjct: 238 AKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLA 297

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
            VL  C +L    +G+ +HE I  + +  N++L  +L++MYA CG +  AREIFD+MS  
Sbjct: 298 TVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSAR 357

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           +VI+WT++IS YG HG+G EAV+LF +M   G+ P+++ FVAVL+AC+HAGL+ +G   F
Sbjct: 358 DVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYF 417

Query: 332 ASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHK 391
            SM   Y ++P  EH+ CMVDL GRAG +NEAY F+  ++ E P   VW A+L AC++H 
Sbjct: 418 DSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIE-PNERVWGALLQACRIHS 476

Query: 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTV 451
           N D+G+  A++L S+ PE  G+YV+LSN+YA AGR   V  VR++M+ KG+KK  G S V
Sbjct: 477 NMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIV 536

Query: 452 EVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRY 511
           E+  + + F +GD+ HP +  IY  LDEL+G+ R  GY PE E+ +H++EEE++E  L  
Sbjct: 537 ELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEVEATLHDVEEEDKEDHLSV 596

Query: 512 HSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKR 571
           HSEKLA+AF L+ TSPG  IR+  NLR C DCH A K IS+ T REI+++D  R HH  +
Sbjct: 597 HSEKLAIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLISIITCREIVLKDTNRIHHIVQ 656

Query: 572 GSCSCLDYW 580
           G CSC DYW
Sbjct: 657 GVCSCGDYW 665



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 116/233 (49%), Gaps = 2/233 (0%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           I + +R+F  +   +   +N ++   +   F   ++  +  M    + P + T + V+  
Sbjct: 243 IRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPP 302

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           C  LS  ++G+ +H  +       +L ++ AL++ YA    +  AR++FD M  + V++W
Sbjct: 303 CGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISW 362

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
            S+IS Y ++G  +EA+ LF  M   G+ PDS   V VLAAC+  G +  G+   + +  
Sbjct: 363 TSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTS 422

Query: 236 Q-GLDVNVVLATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMH 286
           +  +       T ++++  R G +++A + I  M+ E N   W A++    +H
Sbjct: 423 RYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIH 475



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 16/238 (6%)

Query: 111 AVIKSCAHLSILNLGRAVHCHVFV---SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           A  ++ AHL  L   RA H  + V     + S  H    L+  YA  + + +A  V +  
Sbjct: 20  AACRAPAHLPSL---RAAHARLLVLLHPSHPSAAHANVKLIQAYAACSALPLAHTVLESS 76

Query: 168 -PD----KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN--PDSTTCVCVLAACAQL 220
            PD     + V +N +I     +   ++A+ LF  MR  G    PD  T    L +C+  
Sbjct: 77  SPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSAS 136

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
            D+ LG  +H  +    LD NV +A S I+MY+RCG    A  +FD M   +V++W AMI
Sbjct: 137 KDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMI 196

Query: 281 SGYGMHGYGTEAVELFHRMRA-HGVRPNNVTFVAVLSACAHAGL--VQEGHRVFASMR 335
           +G+   G    A+E+F +     G  P+  T   +L A  +A    ++   RVF +M+
Sbjct: 197 AGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQ 254


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/609 (37%), Positives = 353/609 (57%), Gaps = 35/609 (5%)

Query: 6   PHSPAYEAILKAGPR---LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    Y  +LK   R   +K  +++H H++  G+  +  +   L+ L   +G ++ A+ +
Sbjct: 117 PDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGV 176

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F      D   +N +I   +++    +S+  +  M    + PS+ T  +V+ +C+ L  L
Sbjct: 177 FDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDL 236

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD------------------------ 158
           N+G+ VH +V     +    ++ AL++ YA   ++D                        
Sbjct: 237 NVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGF 296

Query: 159 -------VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
                  +AR  FD+MP++  V+W +MI GY Q    KE + LF  M+   + PD  T V
Sbjct: 297 TNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMV 356

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
            +L ACA LG ++LG W+  +I    + ++  +  +LI+MY  CGNV KA  IF+ M   
Sbjct: 357 SILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHR 416

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           + I+WTA+I G  ++GYG EA+++F +M    + P+ VT + VL AC H+G+V +G + F
Sbjct: 417 DKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFF 476

Query: 332 ASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHK 391
           A M  ++G+ P V H+ CMVDL GRAG L EA++ +K+ +  KP   VW ++LGAC++H+
Sbjct: 477 ARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKN-MPVKPNSIVWGSLLGACRVHR 535

Query: 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTV 451
           + ++    A+ +L +EPEN   YV+L NIYA   R +++  VR +M+ +G+KK  G S +
Sbjct: 536 DEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLI 595

Query: 452 EVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRY 511
           E++   + F  GD+ HP + EIY  LDE+    + AGY P++     ++ EEE+E ++  
Sbjct: 596 EMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYR 655

Query: 512 HSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKR 571
           HSEKLA+AFGL+ + PG+TIRIVKNLRMCVDCH   K +S   NRE+IVRDR RFHHF+ 
Sbjct: 656 HSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRH 715

Query: 572 GSCSCLDYW 580
           GSCSC DYW
Sbjct: 716 GSCSCKDYW 724



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 185/360 (51%), Gaps = 34/360 (9%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIF 63
           P +P   +++K    +  L+Q+H+  I  G   +  +  ++++  C  + G + YA+ +F
Sbjct: 18  PQTPPL-SLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVF 76

Query: 64  FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123
             +P P+ F++N +I   S+      ++  Y  M+   + P  YT+  ++K     + + 
Sbjct: 77  DTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVK 136

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
            GR +H H+   G+ S++ VQ AL++ Y+ S  V VAR VFDR     VV WN MISGY 
Sbjct: 137 CGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYN 196

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           ++    E++ LF+ M    V P S T V VL+AC++L D+++G+ VH ++    ++   V
Sbjct: 197 RSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRV 256

Query: 244 LATSLINMYARCGN-------------------------------VSKAREIFDMMSELN 272
           L  +LI+MYA CG+                               V  AR  FD M E +
Sbjct: 257 LENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERD 316

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
            ++WTAMI GY       E + LF  M+A  ++P+  T V++L+ACAH G ++ G  + A
Sbjct: 317 FVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKA 376



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 147/296 (49%), Gaps = 24/296 (8%)

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN--NVDVARKVFDRMP 168
           ++IK+C  ++ L   + +H     +G  S+  V A ++ F  K    +++ AR VFD MP
Sbjct: 24  SLIKTCKSMAQL---KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMP 80

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
             +   WN+MI GY + G    A+ ++  M + GV PD  T   +L    +   +  GR 
Sbjct: 81  GPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRE 140

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H+ IV  G   NV +  +LI++Y+  G VS AR +FD  S+ +V+ W  MISGY     
Sbjct: 141 LHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQ 200

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             E+++LF  M    V P+++T V+VLSAC+    +  G RV   ++ +  + P      
Sbjct: 201 FDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVK-DLKIEPVRVLEN 259

Query: 349 CMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAVWTAM------LGACKMHKNF 393
            ++D++   G ++ A         +DVI        WTA+      LG   + +N+
Sbjct: 260 ALIDMYAACGDMDTALGIFDNMKSRDVIS-------WTAIVTGFTNLGQVGLARNY 308


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/579 (39%), Positives = 340/579 (58%), Gaps = 4/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+  ++ +IL      + L   + VHA  + AG      + T L+ +    G I  A+R
Sbjct: 256 KPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARR 315

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   D   +  +I   ++     D+   +  M    I P   T+  ++ +CA  + 
Sbjct: 316 VFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISAN 375

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           LN  R +H  V ++G+ +DL V  ALV+ YAK   +  AR+VFD MP + VV+W++MI  
Sbjct: 376 LNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGA 435

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y +NG+  EA   F+LM+   + PD  T + +L AC  LG +D+G  ++   +   L  +
Sbjct: 436 YVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSH 495

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V L  +LI M A+ G+V +AR IFD M   +VI W AMI GY +HG   EA+ LF RM  
Sbjct: 496 VPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLK 555

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
              RPN+VTFV VLSAC+ AG V EG R F  + +  G++P V+ + CMVDL GRAG L+
Sbjct: 556 ERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELD 615

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA   +K  +  KP  ++W+++L AC++H N D+    AE  L ++P +   YV LS++Y
Sbjct: 616 EAELLIKS-MPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMY 674

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AG  + V  VR +M  +G++K  G + +EV  K + F + D+SHP   EIY  L  LM
Sbjct: 675 AAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLM 734

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              +  GY+P +++ +H++ E+++E ++ YHSEKLA+A+G++    G  IRI KNLR+C 
Sbjct: 735 NAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCS 794

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSA KFIS  T REII RD  RFHHFK G CSC DYW
Sbjct: 795 DCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 199/368 (54%), Gaps = 3/368 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           ++VHA ++ AG+     + T L+S+    G +  A+++F  +   D   FN ++   +K+
Sbjct: 178 KEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKS 237

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
                +   + RM    + P+  +F +++  C     L  G+AVH     +G   D+ V 
Sbjct: 238 GDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVA 297

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            +L+  Y    +++ AR+VFD M  + VV+W  MI GY +NG  ++A GLF  M++ G+ 
Sbjct: 298 TSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQ 357

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD  T + ++ ACA   +++  R +H  +   G   +++++T+L++MYA+CG +  AR++
Sbjct: 358 PDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQV 417

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD M   +V++W+AMI  Y  +GYGTEA E FH M+   + P+ VT++ +L+AC H G +
Sbjct: 418 FDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGAL 477

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
             G  ++    +   L+  V     ++ +  + G +  A +++ D +  +     W AM+
Sbjct: 478 DVGMEIYTQAIKA-DLVSHVPLGNALIIMNAKHGSVERA-RYIFDTMVRRDV-ITWNAMI 534

Query: 385 GACKMHKN 392
           G   +H N
Sbjct: 535 GGYSLHGN 542



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 218/427 (51%), Gaps = 12/427 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QV  H+I  G   +   L  L+ L    G +T A++IF  + +     +N LI   ++ 
Sbjct: 77  KQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQV 136

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++   +R+M+   + PS  TF +V+ +C+  + LN G+ VH  V  +G+ SD  + 
Sbjct: 137 GHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIG 196

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            ALV+ Y K  ++D AR+VFD +  + V  +N M+ GY ++G  ++A  LF  M+  G+ 
Sbjct: 197 TALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLK 256

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  + + +L  C     +  G+ VH   +  GL  ++ +ATSLI MY  CG++  AR +
Sbjct: 257 PNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRV 316

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD M   +V++WT MI GY  +G   +A  LF  M+  G++P+ +T++ +++ACA +  +
Sbjct: 317 FDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANL 376

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
                + + +    G    +     +V ++ + G + +A + V D +  +   + W+AM+
Sbjct: 377 NHAREIHSQV-DIAGFGTDLLVSTALVHMYAKCGAIKDARQ-VFDAMPRRDVVS-WSAMI 433

Query: 385 GACKMHKNFDLGVEVAE--HLL---SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           GA   +     G E  E  HL+   ++EP+    Y+ L N     G +D    +    I+
Sbjct: 434 GA---YVENGYGTEAFETFHLMKRSNIEPDGV-TYINLLNACGHLGALDVGMEIYTQAIK 489

Query: 440 KGLKKHV 446
             L  HV
Sbjct: 490 ADLVSHV 496



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 145/282 (51%), Gaps = 13/282 (4%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T+  + + C  L    LG+ V  H+   G   +++    L+  Y+   NV  AR++FD +
Sbjct: 59  TYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSV 118

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
            +K+VV WN++I+GY Q G  KEA  LF  M D G+ P   T + VL AC+    ++ G+
Sbjct: 119 ENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGK 178

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            VH  +V  G   +  + T+L++MY + G++  AR++FD +   +V  +  M+ GY   G
Sbjct: 179 EVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSG 238

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
              +A ELF+RM+  G++PN ++F+++L  C     +  G  V A      GL+  +   
Sbjct: 239 DWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQC-MNAGLVDDIRVA 297

Query: 348 VCMVDLFGRAGLLNEAYKF-----VKDVIGEKPAPAVWTAML 384
             ++ ++   G +  A +      V+DV+        WT M+
Sbjct: 298 TSLIRMYTTCGSIEGARRVFDNMKVRDVVS-------WTVMI 332



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 1/162 (0%)

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G + DS T V +   C +L D  LG+ V + I+  G  +N+    +LI +Y+ CGNV++A
Sbjct: 52  GNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEA 111

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           R+IFD +    V+ W A+I+GY   G+  EA  LF +M   G+ P+ +TF++VL AC+  
Sbjct: 112 RQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSP 171

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
             +  G  V A +    G +        +V ++ + G +++A
Sbjct: 172 AGLNWGKEVHAQVVTA-GFVSDFRIGTALVSMYVKGGSMDDA 212


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/563 (39%), Positives = 344/563 (61%), Gaps = 4/563 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           ++  +QVHAH++  G       ++ L++   +   G + YA  IF  I  P SF +NT+I
Sbjct: 11  MEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMI 70

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
             N       ++LL Y  MI   + P  +T+  V+K+C+ L +++ G  VH HVF  G +
Sbjct: 71  RGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLE 130

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
            D+ VQ +L+N Y K   +  A  VF+ M +KSV +W+++I  +       E + L   M
Sbjct: 131 GDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKM 190

Query: 199 RDFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
              G    + +T V VL+AC  LG  DLG+ +H  ++    ++NVV+ TSLI+MY + G 
Sbjct: 191 SSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGC 250

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           + K   +F  MSE N  ++T MISG  +HG G EA+++F  M   G+ P++V +V V SA
Sbjct: 251 LEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSA 310

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           C+HAGLV+EG + F SM+ E+ + P V+H+ CMVDL GR G+L EAY+ +K  +  KP  
Sbjct: 311 CSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKS-MSIKPND 369

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
            +W ++L ACK+H N ++G   AE+L  +   N G Y++L+N+YA A + D V  +R  +
Sbjct: 370 VIWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKL 429

Query: 438 IQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM 497
            ++ L +  G+S +E  +K Y F   DKS P  N IY+ + ++  + +  GY+P++   +
Sbjct: 430 AERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVL 489

Query: 498 HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNRE 557
            ++++EE++  L++HS+KLA+AFGL+ TS G  +RI +NLRMC DCH+  K+IS+   RE
Sbjct: 490 LDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYERE 549

Query: 558 IIVRDRLRFHHFKRGSCSCLDYW 580
           I VRDRLRFHHFK GSCSC DYW
Sbjct: 550 ITVRDRLRFHHFKNGSCSCKDYW 572


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/554 (39%), Positives = 343/554 (61%), Gaps = 1/554 (0%)

Query: 27   VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
            +HA  +   Y   R +   LL +    G I  A+  F  + + D  L++ +I R ++ N 
Sbjct: 654  IHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQ 713

Query: 87   STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
            +  +   + RM+ S++SP+ ++ S+V+++CA++ +L+LG+ +H H    G++S+L V  A
Sbjct: 714  NEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNA 773

Query: 147  LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
            L++ YAK ++++ + ++F  + D + V+WN++I GY ++GF + A+ +F  MR   V   
Sbjct: 774  LIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPST 833

Query: 207  STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
              T   VL ACA    I+    VH  I     + + +++ SLI+ YA+CG +  AREIF+
Sbjct: 834  QVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFE 893

Query: 267  MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
             + E ++++W A+ISGY +HG    A ELF  M  + ++ N++TFVA+LS C   GLV +
Sbjct: 894  TLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQ 953

Query: 327  GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
            G  +F SMR ++G+ P +EH+ C+V L GRAG LN+A  F+ D I   P+  VW A+L +
Sbjct: 954  GLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGD-IPSAPSAMVWRALLSS 1012

Query: 387  CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
            C +HKN +LG   AE +L +EP++   YV+LSN+Y+ AG +D+V   R  M   G++K  
Sbjct: 1013 CIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEP 1072

Query: 447  GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
            G S VE+  + + FS+G + HP    I   L+ L  +    GYVP+++  +H+LEEE++ 
Sbjct: 1073 GLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEVLHDLEEEQKV 1132

Query: 507  YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
              L  HSE+LALA+GL+ T PG  IRI+KNLR C+DCH+  K IS    +EIIVRD  RF
Sbjct: 1133 RMLWVHSERLALAYGLVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINRF 1192

Query: 567  HHFKRGSCSCLDYW 580
            HHF+ G+CSC DYW
Sbjct: 1193 HHFEEGTCSCGDYW 1206



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 159/293 (54%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VHA     G+ R+  + + L+      G ++ A+R+F  I   D+  +  ++   S+ + 
Sbjct: 553 VHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDC 612

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             ++L  + +M V+    + +  ++V+++   LS + LG+ +H     + YD++ HV  A
Sbjct: 613 PENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGA 672

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ YAK  N++ AR  F+ + +  V+ W+ MIS Y Q    ++A  LF  M    V+P+
Sbjct: 673 LLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPN 732

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             +   VL ACA +  +DLG+ +H   +  G +  + +  +LI++YA+C ++  + EIF 
Sbjct: 733 EFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFS 792

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            + ++N ++W  +I GY   G+G  A+ +F  MRA  V    VT+ +VL ACA
Sbjct: 793 SLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACA 845



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 156/312 (50%), Gaps = 10/312 (3%)

Query: 25  QQVHAHLIVAGYGRSRSML---TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           + VH H++ +G G +R  L     LL++    G    A R+F  +P  +   F TL+  +
Sbjct: 448 RAVHGHVVRSG-GLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGH 506

Query: 82  S-KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
           + +  F   S LF +R+       + +  + V+K    +  L L   VH      G+D +
Sbjct: 507 ALRGEFEEASALF-QRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRN 565

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
             V +AL++ Y+    V  AR+VFD +  K  VAW +M+S Y +N   +  + +F+ MR 
Sbjct: 566 AFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRV 625

Query: 201 F--GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
               +NP + T V   A C  L  + LG+ +H   V    D    +  +L++MYA+CGN+
Sbjct: 626 AVSKLNPFALTSVLRAAVC--LSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNI 683

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
             AR  F+M++  +VI W+ MIS Y       +A ELF RM    V PN  +  +VL AC
Sbjct: 684 EDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQAC 743

Query: 319 AHAGLVQEGHRV 330
           A+  L+  G ++
Sbjct: 744 ANMPLLDLGKQI 755



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 161/318 (50%), Gaps = 11/318 (3%)

Query: 6    PHSPAYEAILKAG---PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
            P+  +  ++L+A    P L   +Q+H H I  G+     +   L+ L      +  +  I
Sbjct: 731  PNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEI 790

Query: 63   FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
            F  +   +   +NT+I+  SK+ F   +L  +R M  +++  +  T+S+V+++CA  + +
Sbjct: 791  FSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASI 850

Query: 123  NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            N    VHC +  S ++SD  V  +L++ YAK   +  AR++F+ + +  +V+WN++ISGY
Sbjct: 851  NHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGY 910

Query: 183  EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI-VGQGLDVN 241
              +G A  A  LF++M    +  +  T V +L+ C   G +  G  + + + +  G++ +
Sbjct: 911  AVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPS 970

Query: 242  VVLATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMHGYGTEAVEL--FHR 298
            +   T ++ +  R G ++ A   I D+ S  + + W A++S   +H    + VEL  F  
Sbjct: 971  MEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVH----KNVELGRFSA 1026

Query: 299  MRAHGVRPNNVTFVAVLS 316
             +   + P + T   +LS
Sbjct: 1027 EKVLEIEPQDETTYVLLS 1044



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 127/263 (48%), Gaps = 9/263 (3%)

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS--DLHVQAALVNFYAKSNNVDVARKV 163
           +Y ++ +++ C        GRAVH HV  SG  +  DL     L+N Y K      A +V
Sbjct: 428 SYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRV 487

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           FD +P++++V++ +++ G+   G  +EA  LF  +R  G   +      VL     +  +
Sbjct: 488 FDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTL 547

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
            L   VH      G D N  + ++LI+ Y+ CG VS AR +FD +   + +AWTAM+S Y
Sbjct: 548 GLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCY 607

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLP 342
             +      +++F +MR    + N     +VL A      V  G  + A S++  Y    
Sbjct: 608 SENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLY---- 663

Query: 343 GVEHHV--CMVDLFGRAGLLNEA 363
             E HV   ++D++ + G + +A
Sbjct: 664 DTERHVYGALLDMYAKCGNIEDA 686


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/611 (36%), Positives = 348/611 (56%), Gaps = 37/611 (6%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   +  ++KA   +  L   Q +H   I +  G    +   L+      G +  A ++
Sbjct: 131 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKV 190

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  I   D   +N++I    +      +L  +++M   ++  S+ T   V+ +CA +  L
Sbjct: 191 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDL 250

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM--------------- 167
             GR V  ++  +  + +L +  A+++ Y K  +++ A+++FD M               
Sbjct: 251 EFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGY 310

Query: 168 ----------------PDKSVVAWNSMISGYEQNGFAKEAIGLFN-LMRDFGVNPDSTTC 210
                           P K +VAWN++IS YEQNG   EA+ +F+ L     +  +  T 
Sbjct: 311 AISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITL 370

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           V  L+ACAQ+G ++LGRW+H +I   G+ +N  + ++LI+MY++CG++ KARE+F+ + +
Sbjct: 371 VSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEK 430

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            +V  W+AMI G  MHG G+EAV++F++M+   V+PN VTF  V  AC+H GLV E   +
Sbjct: 431 RDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 490

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           F  M   YG++P  +H+ C+VD+ GR+G L +A KF+ + +   P+ +VW A+LGACK+H
Sbjct: 491 FYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFI-EAMPIPPSTSVWGALLGACKIH 549

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
            N  L       LL +EP N G +V+LSNIYA +G+ D V  +R  M   GLKK  G S+
Sbjct: 550 ANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSS 609

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE-REYSL 509
           +E+D   + F  GD +HP + ++Y  L E+M + +  GY PE    +  +EEEE +E SL
Sbjct: 610 IEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSL 669

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
             HSEKLA+ +GL+ T     IR++KNLRMC DCH+  K IS   NREIIVRDR RFHHF
Sbjct: 670 NLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHF 729

Query: 570 KRGSCSCLDYW 580
           + G CSC D+W
Sbjct: 730 RNGQCSCNDFW 740



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 125/406 (30%), Positives = 211/406 (51%), Gaps = 39/406 (9%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFLFNTLI 78
           L+ L+Q HAH+I  G        +KL ++   + F  + YA+++F  IP P+SF +NTLI
Sbjct: 44  LRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLI 103

Query: 79  IRNSKANFSTDSLLFYRRMIVSNIS--PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
              +       S+  +  M+ S     P+ YTF  +IK+ A +S L+LG+++H     S 
Sbjct: 104 RAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSA 163

Query: 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN 196
             SD+ V  +L++ Y    ++D A KVF  + +K VV+WNSMI+G+ Q G   +A+ LF 
Sbjct: 164 VGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFK 223

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            M    V     T V VL+ACA++ D++ GR V  +I    ++VN+ LA ++++MY +CG
Sbjct: 224 KMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCG 283

Query: 257 NVSKAREIFDMMSE-------------------------------LNVIAWTAMISGYGM 285
           ++  A+ +FD M E                                +++AW A+IS Y  
Sbjct: 284 SIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQ 343

Query: 286 HGYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
           +G   EA+ +FH ++    ++ N +T V+ LSACA  G ++ G  + + +++  G+    
Sbjct: 344 NGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKN-GIKMNF 402

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
                ++ ++ + G L +A +    V  EK    VW+AM+G   MH
Sbjct: 403 YVTSALIHMYSKCGDLEKAREVFNSV--EKRDVFVWSAMIGGLAMH 446


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/580 (39%), Positives = 349/580 (60%), Gaps = 7/580 (1%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P S  +  +LKA   L  LQ    VHA +   G+     +   L++L      +  A+ +
Sbjct: 117 PDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTV 176

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFS--TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           F  +P P+  + +   I ++ A      ++L  + +M   ++ P      +V+ +   L 
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQ 236

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L  GR++H  V   G +++  +  +L   YAK   V  A+ +FD+M   +++ WN+MIS
Sbjct: 237 DLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMIS 296

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY +NGFAK+AI LF+ M +  V PD+ +    ++ACAQ+G ++  RW+ E++       
Sbjct: 297 GYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRD 356

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +V ++++LI+M+A+CG+V  AR +FD   + +V+ W+AMI GYG+HG   EA+ L+  M 
Sbjct: 357 DVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAME 416

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             GV PN+VTF+ +L AC H+G+V+EG   F  M  ++ + P  +H+ C++DL GRAG L
Sbjct: 417 RDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRM-ADHKINPQQQHYACIIDLLGRAGHL 475

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
           ++AY+ +K  +  +P   VW A+L ACK H++ +LG   A+ L S++P N GHYV LSN+
Sbjct: 476 DQAYEVIK-CMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNL 534

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA A   DRV  VR  M +KGL K VG S VEV  +   F +GDKSHP   EI + ++ +
Sbjct: 535 YAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWI 594

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
             R +E G+V   ++++H+L +EE E +L  HSE++ +A+GL+ T  G T+RI KNLR C
Sbjct: 595 ESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQGTTLRITKNLRAC 654

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           V+CH+A K IS    REI+VRD  RFHHFK G CSC DYW
Sbjct: 655 VNCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/395 (34%), Positives = 221/395 (55%), Gaps = 14/395 (3%)

Query: 3   NKQPHSPA-YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           N   HS + Y +++ +      L+Q+HA L+V G   S  ++TKL+      G IT+A++
Sbjct: 15  NSGIHSDSFYASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQ 74

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P P  F +N +I   S+ N   D+LL Y +M ++ +SP ++TF  ++K+C  LS 
Sbjct: 75  VFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSH 134

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD--RMPDKSVVAWNSMI 179
           L +GR VH  VF  G+++D+ VQ  L+  YAK   +  AR VF+   +P++++V+W +++
Sbjct: 135 LQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIV 194

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           S Y QNG   EA+ +F+ MR   V PD    V VL A   L D++ GR +H  ++  GL+
Sbjct: 195 SAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLE 254

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
               L  SL  MYA+CG V+ A+ +FD M   N+I W AMISGY  +G+  +A++LFH M
Sbjct: 255 TEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEM 314

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFG 355
               VRP+ ++  + +SACA  G +++     A    EY         V     ++D+F 
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQ-----ARWMDEYVSRSDYRDDVFISSALIDMFA 369

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           + G + E  + V D   ++    VW+AM+    +H
Sbjct: 370 KCGSV-ECARSVFDRTLDRDV-VVWSAMIVGYGLH 402


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/556 (40%), Positives = 342/556 (61%), Gaps = 3/556 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H++ I  G      +  KL+ L  + G +   Q++F  +   D   +N++I        
Sbjct: 269 IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQ 328

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLHVQA 145
              ++  ++ M +S I P   T  ++    + L  +   R+V       G+   D+ +  
Sbjct: 329 PLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGN 388

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-VN 204
           A+V  YAK   VD AR VF+ +P+  V++WN++ISGY QNGFA EAI ++N+M + G + 
Sbjct: 389 AVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIA 448

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +  T V VL AC+Q G +  G  +H  ++  GL ++V + TSL +MY +CG +  A  +
Sbjct: 449 ANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSL 508

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  +  +N + W  +I+ +G HG+G +AV LF  M   GV+P+++TFV +LSAC+H+GLV
Sbjct: 509 FYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLV 568

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG   F  M+ +YG+ P ++H+ CMVD++GRAG L  A KF+K  +  +P  ++W A+L
Sbjct: 569 DEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKS-MSLQPDASIWGALL 627

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            AC++H N DLG   +EHL  VEPE+ G++V+LSN+YA AG+ + V+ +R+I   KGL+K
Sbjct: 628 SACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRK 687

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G+S++EVD K  +F  G+++HP   E+Y+ L  L  + +  GYVP+    + ++E++E
Sbjct: 688 TPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDE 747

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E+ L  HSE+LA+AF L+ T    TIRI KNLR+C DCHS  KFIS  T REIIVRD  
Sbjct: 748 KEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSN 807

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHFK G CSC DYW
Sbjct: 808 RFHHFKNGVCSCGDYW 823



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 190/344 (55%), Gaps = 8/344 (2%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+  + +HA L+V+   ++  +  KL++L C  G +  A+  F  I + D + +N +I  
Sbjct: 67  LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126

Query: 81  NSKANFSTDSL-LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             +A  S++ +  F   M+ S ++P   TF +V+K+C   ++++ G  +HC     G+  
Sbjct: 127 YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR--TVID-GNKIHCLALKFGFMW 183

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D++V A+L++ Y++   V  AR +FD MP + + +WN+MISGY Q+G AKEA+ L N +R
Sbjct: 184 DVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR 243

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
                 DS T V +L+AC + GD + G  +H + +  GL+  + ++  LI++YA  G + 
Sbjct: 244 AM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLR 299

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
             +++FD M   ++I+W ++I  Y ++     A+ LF  MR   ++P+ +T +++ S  +
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS 359

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
             G ++    V     ++   L  +     +V ++ + GL++ A
Sbjct: 360 QLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSA 403



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 204/417 (48%), Gaps = 11/417 (2%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P    + ++LKA   +    ++H   +  G+     +   L+ L      +  A+ +F  
Sbjct: 151 PDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDE 210

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           +P  D   +N +I    ++  + ++L     +   +    + T  +++ +C      N G
Sbjct: 211 MPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMD----SVTVVSLLSACTEAGDFNRG 266

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
             +H +    G +S+L V   L++ YA+   +   +KVFDRM  + +++WNS+I  YE N
Sbjct: 267 VTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELN 326

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV-NVVL 244
                AI LF  MR   + PD  T + + +  +QLGDI   R V  F + +G  + ++ +
Sbjct: 327 EQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITI 386

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG- 303
             +++ MYA+ G V  AR +F+ +   +VI+W  +ISGY  +G+ +EA+E+++ M   G 
Sbjct: 387 GNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGE 446

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           +  N  T+V+VL AC+ AG +++G ++   + +  GL   V     + D++G+ G L +A
Sbjct: 447 IAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDA 505

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLS 418
                 +      P  W  ++     H + +  V + + +L   V+P++     +LS
Sbjct: 506 LSLFYQIPRVNSVP--WNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 163/331 (49%), Gaps = 30/331 (9%)

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L   + +H  + VS    ++ + A LVN Y    NV +AR  FD + ++ V AWN MISG
Sbjct: 67  LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126

Query: 182 YEQNGFAKEAIGLFNL-MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           Y + G + E I  F+L M   G+ PD  T   VL AC  + D   G  +H   +  G   
Sbjct: 127 YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMW 183

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +V +A SLI++Y+R   V  AR +FD M   ++ +W AMISGY   G   EA+ L + +R
Sbjct: 184 DVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR 243

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC----MVDLFGR 356
           A     ++VT V++LSAC  AG    G  +       Y +  G+E  +     ++DL+  
Sbjct: 244 AM----DSVTVVSLLSACTEAGDFNRGVTI-----HSYSIKHGLESELFVSNKLIDLYAE 294

Query: 357 AGLLNEAYK-----FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL-LSVEPEN 410
            G L +  K     +V+D+I        W +++ A ++++     + + + + LS    +
Sbjct: 295 FGRLRDCQKVFDRMYVRDLIS-------WNSIIKAYELNEQPLRAISLFQEMRLSRIQPD 347

Query: 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
               + L++I +  G +     V+   ++KG
Sbjct: 348 CLTLISLASILSQLGDIRACRSVQGFTLRKG 378



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 107/264 (40%), Gaps = 49/264 (18%)

Query: 10  AYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
            + ++L A  +   L+Q   +H  L+  G      ++T L  +    G +  A  +F+ I
Sbjct: 453 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 512

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P  +S  +NTLI  +        +++ ++ M+   + P + TF  ++ +C+H  +++ G+
Sbjct: 513 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQ 572

Query: 127 AVHCHVFVS---GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
              C   +    G    L     +V+ Y ++  ++ A K                     
Sbjct: 573 --WCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALK--------------------- 609

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV---GQGLDV 240
                         ++   + PD++    +L+AC   G++DLG+   E +     + +  
Sbjct: 610 -------------FIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGY 656

Query: 241 NVVLATSLINMYARCGNVSKAREI 264
           +V+L+    NMYA  G      EI
Sbjct: 657 HVLLS----NMYASAGKWEGVDEI 676


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/593 (39%), Positives = 359/593 (60%), Gaps = 17/593 (2%)

Query: 2   KNKQPHSPAYEAILKAGPR---LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAG-- 54
           K K P  P    +L   P    L+ L Q+HA  + AG     +++T+LL+L    DAG  
Sbjct: 17  KPKSP-PPQQHPVLSHLPHCTSLRTLAQLHAAAVKAGLAAHPALVTRLLTLCTGPDAGPA 75

Query: 55  FITYAQRIFFCIPSP-DSFLFNTLI-----IRNSKANFSTDSLLFYRRMIVSNISPSNYT 108
            + YA+++F  +P P D+  +NTL+       N  ++ +  ++  + RM+   ++P  YT
Sbjct: 76  HLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYT 135

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           F +++K+CA       GR  H      G     +V+  L+N YA+  +   AR +F    
Sbjct: 136 FVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTD 195

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
              VV++N+MI+   ++    EA+ LF  M+  G+ P S T + VL+ACA LG ++LGRW
Sbjct: 196 GGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRW 255

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           VH+++   GL   V ++T+LI+MYA+CG++  A ++F  M   +  AW+ MI  Y  HGY
Sbjct: 256 VHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGY 315

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
           G EA+ LF  M+  G++P+++TF+ VL AC+H+GLV EG + F  M+ ++G++PG++H+ 
Sbjct: 316 GREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDMK-DHGIVPGIKHYG 374

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
           C+ DL  R+G L  AYKF+ D +   P P +W  +L AC  H +F+LG  V E +L ++ 
Sbjct: 375 CVTDLLARSGQLERAYKFI-DELPINPTPILWRTLLSACGGHGDFELGKRVFERILKLDD 433

Query: 409 ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHP 468
            + G YV+ SN+ A  G  + + +VR +M +KG+ K  G S++E+D   + F  GD  HP
Sbjct: 434 SHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAGDGRHP 493

Query: 469 NTNEIYQYLDELMGRCREAGYVPESESAMH-ELEEEEREYSLRYHSEKLALAFGLMRTSP 527
            + E  + +DE++ + +  GYVP +    H E+ EEE+  SL+YHSEKLA+AFGL+ T+P
Sbjct: 494 KSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAP 553

Query: 528 GMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           G T+R+VKNLR+C DCHS  K +S+  NR II+RD  RFHHF+ G CSC DYW
Sbjct: 554 GATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/574 (40%), Positives = 349/574 (60%), Gaps = 16/574 (2%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF-----ITYAQRIFFCIPSP-DSFLF 74
           L+ L Q+HA  + +G     + +T+LL+L  D G      ++YA+++F  IP P D   +
Sbjct: 44  LRALAQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWY 103

Query: 75  NTLI---IRNSKANFS----TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
           NTL+    R S A  +     ++   + RM+   ++P  YTF +++K+CA       GR 
Sbjct: 104 NTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQ 163

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
            H      G     +V   L+N YA+  +   AR +F R+  + VV++N+MI+   ++  
Sbjct: 164 AHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSR 223

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
             EA+ LF  M+  G+   S T + VL+ACA LG ++LGRW+HE++    LD  V + T+
Sbjct: 224 PGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTA 283

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           LI+MY +CG++  A  +F  M   +  AW+ MI  Y  H YG EA+ LF  M+  G++P+
Sbjct: 284 LIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPD 343

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           +VTF+ VL AC+H+GLV EG + F SMR E+GL+PG++H+ C+ DL  R+G L+ AY+F+
Sbjct: 344 DVTFLGVLYACSHSGLVSEGLQYFDSMR-EFGLVPGIKHYGCVADLLARSGQLDRAYEFI 402

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
            D +  KP   +W  +L AC    + DLG +V E +L ++  + G YV+ SN+ A  GR 
Sbjct: 403 -DELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRW 461

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           + +  VR +M +KG+ K  G S++EVD + + F  GD  HP + +  + +D ++ + + A
Sbjct: 462 EEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDGVIEQLKLA 521

Query: 488 GYVPESESAMH-ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSA 546
           GYVP +    H E+ EEE+  SLRYHSEKLA++FGL+ TSPG T+R+VKNLR+C DCHS 
Sbjct: 522 GYVPNTSHVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPGTTLRVVKNLRVCPDCHSM 581

Query: 547 IKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            K +S+  NR II+RD  RFHHF+ G CSC DYW
Sbjct: 582 AKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/535 (41%), Positives = 340/535 (63%), Gaps = 2/535 (0%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LL++   + F+  A ++F  +P  ++  F TLI   +++    +++  + R+    + P+
Sbjct: 79  LLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRL-HREVLPN 137

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            +TF++V+++CA +  LNLG  +HCHV   G  SD+ V  AL++ YAK   ++ + ++F 
Sbjct: 138 QFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFA 197

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
             P ++ V WN++I G+ Q G  ++A+ LF  M ++ V     T    L ACA L  ++ 
Sbjct: 198 ESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEP 257

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G  +H   V    D ++V+  +LI+MYA+CG++  AR +FD+M++ + ++W AMISGY M
Sbjct: 258 GLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSM 317

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           HG G EA+ +F +M+   V+P+ +TFV VLSACA+AGL+ +G   F SM Q++G+ P +E
Sbjct: 318 HGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIE 377

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ CMV L GR G L++A K + D I  +P+  VW A+LGAC +H + +LG   A+ +L 
Sbjct: 378 HYTCMVWLLGRGGHLDKAVKLI-DEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLE 436

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           +EP++   +V+LSN+YA A R D V  VR  M +KG+KK  G S +E     + F++GD 
Sbjct: 437 MEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDT 496

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
           SHP    I   L+ L  + ++AGY+P     + ++E+EE+E  L  HSE+LAL+FG++RT
Sbjct: 497 SHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRT 556

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             G  IRI+KNLR+CVDCH+AIK IS    REI+VRD  RFHHF+ G CSC DYW
Sbjct: 557 PSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 185/370 (50%), Gaps = 11/370 (2%)

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYT---FSAVIKSCAHLSILNLGRAVHCH 131
           N  +I+ S+  FS  S    +   V ++SPS +    ++  ++ C      + G+ +HC 
Sbjct: 5   NNFLIQFSRRGFSVQSAKLTQEF-VGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCE 63

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           +   G   DL     L+N Y KS+ +  A K+FD MP+++ +++ ++I GY ++    EA
Sbjct: 64  ILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEA 123

Query: 192 IGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           I LF  L R+  V P+  T   VL ACA +  ++LG  +H  ++  GL  +V ++ +L++
Sbjct: 124 IELFVRLHRE--VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMD 181

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           +YA+CG +  + E+F      N + W  +I G+   G G +A+ LF  M  + V+   VT
Sbjct: 182 VYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVT 241

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           + + L ACA    ++ G ++  S+  +      +     ++D++ + G + +A + V D+
Sbjct: 242 YSSALRACASLAALEPGLQIH-SLTVKTTFDKDIVVTNALIDMYAKCGSIKDA-RLVFDL 299

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRMDR 429
           +  K     W AM+    MH      + + + +   E + +   +V + +  A AG +D+
Sbjct: 300 MN-KQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQ 358

Query: 430 VEVVRNIMIQ 439
            +     MIQ
Sbjct: 359 GQAYFTSMIQ 368



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 149/286 (52%), Gaps = 5/286 (1%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   + ++L+A   ++ L    Q+H H+I  G      +   L+ +    G +  +  +
Sbjct: 136 PNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMEL 195

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F   P  +   +NT+I+ + +      +L  +  M+   +  +  T+S+ +++CA L+ L
Sbjct: 196 FAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAAL 255

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G  +H     + +D D+ V  AL++ YAK  ++  AR VFD M  +  V+WN+MISGY
Sbjct: 256 EPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGY 315

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR-WVHEFIVGQGLDVN 241
             +G  +EA+ +F+ M++  V PD  T V VL+ACA  G +D G+ +    I   G++  
Sbjct: 316 SMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPC 375

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
           +   T ++ +  R G++ KA ++ D +  + +V+ W A++    +H
Sbjct: 376 IEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIH 421


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/579 (37%), Positives = 363/579 (62%), Gaps = 5/579 (0%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+S     +L      K L   + +H + +   +     + T LL +      + YA++I
Sbjct: 208 PNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKI 267

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSI 121
           F  +   +   ++ +I     ++   ++L  + +MI+ + + P+  T  +V+++CA L+ 
Sbjct: 268 FDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTD 327

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L+ GR +HC++   G   D+ +   L++ YAK   +D A + FD M  K  V++++++SG
Sbjct: 328 LSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSG 387

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             QNG A  A+ +F +M+  G++PD TT + VL AC+ L  +  G   H +++ +G   +
Sbjct: 388 CVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATD 447

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            ++  +LI+MY++CG +S ARE+F+ M   ++++W AMI GYG+HG G EA+ LFH + A
Sbjct: 448 TLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLA 507

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G++P+++TF+ +LS+C+H+GLV EG   F +M +++ ++P +EH +CMVD+ GRAGL++
Sbjct: 508 LGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLID 567

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA+ F++++  E P   +W+A+L AC++HKN +LG EV++ + S+ PE+ G++V+LSNIY
Sbjct: 568 EAHHFIRNMPFE-PDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIY 626

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           + AGR D    +R      GLKK  G S +E++   + F  GD+SH   ++I + L+EL+
Sbjct: 627 SAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELL 686

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              +  GY  E      ++EEEE+E  L YHSEKLA+AFG++    G  I + KNLR+C 
Sbjct: 687 VEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCG 746

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+AIKF++V T REI VRD  RFHHFK G+C+C D+W
Sbjct: 747 DCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 213/406 (52%), Gaps = 11/406 (2%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y  +L+A  + K L   +++H H +        S+L KL  L      +  A+R+F  IP
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLL-FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           +P   L+N  IIR    N   D  +  Y  M+   + P+ YT+  V+K+C+ L  +  G 
Sbjct: 71  NPSVILWNQ-IIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H H  + G +SD+ V  ALV+FYAK   +  A+++F  M  + VVAWN+MI+G    G
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
              +A+ L   M++ G+ P+S+T V VL    +   +  G+ +H + V +  D  VV+ T
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGT 249

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM-RAHGVR 305
            L++MYA+C  +  AR+IFD+M   N ++W+AMI GY       EA+ELF +M     + 
Sbjct: 250 GLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMD 309

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           P  VT  +VL ACA    +  G ++   + +  G +  +     ++ ++ + G++++A +
Sbjct: 310 PTPVTLGSVLRACAKLTDLSRGRKLHCYIIK-LGXVLDILLGNTLLSMYAKCGVIDDAIR 368

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE--HLLSVEPE 409
           F  D +  K + + ++A++  C  + N  + + +     L  ++P+
Sbjct: 369 FF-DXMNPKDSVS-FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 162/318 (50%), Gaps = 5/318 (1%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           ++++C     L   + +H H   +  ++D  V   L   Y   N V +AR++FD +P+ S
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           V+ WN +I  Y  NG    AI L++ M   GV P+  T   VL AC+ L  I+ G  +H 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
                GL+ +V + T+L++ YA+CG + +A+ +F  MS  +V+AW AMI+G  ++G   +
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCM 350
           AV+L  +M+  G+ PN+ T V VL     A  +  G  +    +R+ +    GV     +
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFD--NGVVVGTGL 251

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410
           +D++ +   L  A K + DV+G +   + W+AM+G           +E+ + ++  +  +
Sbjct: 252 LDMYAKCQCLLYARK-IFDVMGVRNEVS-WSAMIGGYVXSDCMKEALELFDQMILKDAMD 309

Query: 411 PGHYVMLSNIYALAGRMD 428
           P    + S + A A   D
Sbjct: 310 PTPVTLGSVLRACAKLTD 327


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/565 (40%), Positives = 340/565 (60%), Gaps = 2/565 (0%)

Query: 17  AGPRLKPL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFN 75
           AG  LK L +Q+H+ L+         +   L+ +      +  A+  F  +P  D   +N
Sbjct: 370 AGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWN 429

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
            +I   S+     ++L  +  M    I  +  T S ++KS A L ++++ R VH     S
Sbjct: 430 AIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKS 489

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G+ SD++V  +L++ Y K ++V+ A ++F+      +V++ SMI+ Y Q G  +EA+ LF
Sbjct: 490 GFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLF 549

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             M+D  + PD   C  +L ACA L   + G+ +H  I+  G  +++    SL+NMYA+C
Sbjct: 550 LEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKC 609

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G++  A   F  ++E  +++W+AMI G   HG+G +A++LF++M   GV PN++T V+VL
Sbjct: 610 GSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVL 669

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
            AC HAGLV E    F SM + +G  P  EH+ CM+DL GRAG +NEA + V  +  E  
Sbjct: 670 GACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEAN 729

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
           A +VW A+LGA ++HK+ +LG   AE L  +EPE  G +V+L+NIYA AG+ + V  VR 
Sbjct: 730 A-SVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRR 788

Query: 436 IMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESES 495
           +M    +KK  G S +EV  K Y F +GD+SH  + EIY  LDEL     +AGYVP  E 
Sbjct: 789 LMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEI 848

Query: 496 AMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
            +H++E+ E+E  L +HSEKLA+AFGL+ T  G  IR+ KNLR+CVDCH+A K+I    +
Sbjct: 849 DLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVS 908

Query: 556 REIIVRDRLRFHHFKRGSCSCLDYW 580
           REIIVRD  RFHHFK GSCSC DYW
Sbjct: 909 REIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 211/388 (54%), Gaps = 12/388 (3%)

Query: 3   NKQPHSPAYEAILK---AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           N  P S +Y  +L        L+P  Q+HAH+  +G     S+   L++L        YA
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYA 110

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           +++      PD   ++ LI   ++      +L+ +  M +  +  + +TFS+V+K+C+ +
Sbjct: 111 RKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             L +G+ VH  V VSG++ D+ V   LV  YAK +    ++++FD +P+++VV+WN++ 
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALF 230

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           S Y Q  F  EA+GLF  M   G+ P+  +   ++ AC  L D   G+ +H +++  G D
Sbjct: 231 SCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYD 290

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            +   A +L++MYA+ G+++ A  +F+ + + ++++W A+I+G  +H +  +A+EL  +M
Sbjct: 291 WDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS---MRQEYGLLPGVEHHVCMVDLFGR 356
           +  G+ PN  T  + L ACA  GL + G ++ +S   M  E  L   V     +VD++ +
Sbjct: 351 KRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVG----LVDMYSK 406

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAML 384
             LL +A +   +++ EK   A W A++
Sbjct: 407 CDLLEDA-RMAFNLLPEKDLIA-WNAII 432



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 201/392 (51%), Gaps = 4/392 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H +LI  GY         L+ +    G +  A  +F  I  PD   +N +I        
Sbjct: 280 IHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEH 339

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
              +L    +M  S I P+ +T S+ +K+CA + +  LGR +H  +     +SDL V   
Sbjct: 340 HEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVG 399

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           LV+ Y+K + ++ AR  F+ +P+K ++AWN++ISGY Q     EA+ LF  M   G+  +
Sbjct: 400 LVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFN 459

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
            TT   +L + A L  + + R VH   V  G   ++ +  SLI+ Y +C +V  A  IF+
Sbjct: 460 QTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFE 519

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
             +  +++++T+MI+ Y  +G G EA++LF  M+   ++P+     ++L+ACA+    ++
Sbjct: 520 ECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQ 579

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G ++   + + YG +  +     +V+++ + G +++A +   ++   +     W+AM+G 
Sbjct: 580 GKQLHVHILK-YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELT--ERGIVSWSAMIGG 636

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
              H +    +++   +L  E  +P H  ++S
Sbjct: 637 LAQHGHGRQALQLFNQMLK-EGVSPNHITLVS 667



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 74/141 (52%)

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           +   + NL+      P S +   +L+ C     +  G  +H  I   GL  +  +   LI
Sbjct: 39  QTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLI 98

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           N+Y++C N   AR++ D  SE ++++W+A+ISGY  +G G  A+  FH M   GV+ N  
Sbjct: 99  NLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEF 158

Query: 310 TFVAVLSACAHAGLVQEGHRV 330
           TF +VL AC+    ++ G +V
Sbjct: 159 TFSSVLKACSIVKDLRIGKQV 179


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/609 (37%), Positives = 348/609 (57%), Gaps = 44/609 (7%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
           A+L      +   ++HA  + AG  + +++  +L      +G +  A  +    P P + 
Sbjct: 35  ALLAGCASARRASELHAAAVRAGVDQDKAVDFRLQRAYAASGRLDLAVALLRRTPDPTAV 94

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
            + + I  +S       +L     M++S+ + P+ +T SA + +C  L++   GRA+H +
Sbjct: 95  FYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPACGGLAV---GRALHGY 151

Query: 132 ------------------------------VFVSGYDSDLHVQA--ALVNFYAKSNNVDV 159
                                         V   G   D HV +  A++  YAK   +D 
Sbjct: 152 AVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDD 211

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           AR +FD +P K ++ WN+M+ GY Q+G   EA+ LF  M   GV PD  + V  L+A AQ
Sbjct: 212 ARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQ 271

Query: 220 LGDIDLGRWVHEFIVGQG---LDVNVVLATSLINMYARCGNVSKAREIFDMMS--ELNVI 274
           LG  + GRW+H F+       + +N  + T+LI+MY +CG++  A  +F  +   + +++
Sbjct: 272 LGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIV 331

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
           AW AM++GY MHG+  EA+  F ++RA G+ P ++TF+ VL+AC+H+GLV EG  +F SM
Sbjct: 332 AWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSM 391

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
            +EYG+ P VEH+ CMVDL GRAG + EA++ V+ +   KP   +W ++L AC++HKN +
Sbjct: 392 AEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNME 451

Query: 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           LG  +A+HL++    N G YV+LSN+YA AG    V  VR +M   G++K  G S VEV 
Sbjct: 452 LGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVG 511

Query: 455 QKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE---SAMHELEEEEREYSLRY 511
           ++   F  GD+SHP   EIY  L+E+ G  R  G+VP +E     + + +   +E +L  
Sbjct: 512 RRVVEFVAGDRSHPRAAEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQALAV 571

Query: 512 HSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKR 571
           HSEKLALAFGL+ T PG  I+IVKNLR C DCH+ +K +S  T R+I+ RDR RFHHF  
Sbjct: 572 HSEKLALAFGLISTPPGTAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHHFVD 631

Query: 572 GSCSCLDYW 580
           GSC+C DYW
Sbjct: 632 GSCTCGDYW 640


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/550 (41%), Positives = 346/550 (62%), Gaps = 10/550 (1%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTK-----LLSLVCDAGFITYAQRIFFCIPSP-DSFLFNTL 77
           L+Q+HA  I  G   S + L K     L+SL      ++YA ++F  I  P + F++NTL
Sbjct: 33  LRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPP-MSYAHKVFSKIEKPINVFIWNTL 91

Query: 78  IIRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
           I   ++   S  +   YR M VS  + P  +T+  +IK+   ++ + LG  +H  V  SG
Sbjct: 92  IRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG 151

Query: 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN 196
           + S ++VQ +L++ YA   +V  A KVFD+MP+K +VAWNS+I+G+ +NG  +EA+ L+ 
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYT 211

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            M   G+ PD  T V +L+ACA++G + LG+ VH +++  GL  N+  +  L+++YARCG
Sbjct: 212 EMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCG 271

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA-HGVRPNNVTFVAVL 315
            V +A+ +FD M + N ++WT++I G  ++G+G EA+ELF  M +  G+ P  +TFV +L
Sbjct: 272 RVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGIL 331

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
            AC+H G+V+EG   F  MR+EY + P +EH  CMVDL  RAG + +AY+++K  +  +P
Sbjct: 332 YACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKS-MPMQP 390

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
              +W  +LGAC +H + DL       +L +EP + G YV+LSN+YA   R   V+ +R 
Sbjct: 391 NVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRK 450

Query: 436 IMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESES 495
            M++ G+KK  G+S VEV  + + F MGDKSHP ++ IY  L E+ GR R  GYVP+  +
Sbjct: 451 QMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISN 510

Query: 496 AMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
              ++EEEE+E ++ YHSEK+A+AF L+ T     I +VKNLR+C DCH AIK +S   N
Sbjct: 511 VYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYN 570

Query: 556 REIIVRDRLR 565
           REI+VRDR R
Sbjct: 571 REIVVRDRSR 580


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/604 (39%), Positives = 349/604 (57%), Gaps = 38/604 (6%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDA-GFITYAQRIFFCIPSPDSF 72
           +L +    + ++QVHA LI  G         KLL  +      I+YA  +F   P PD F
Sbjct: 7   LLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLF 66

Query: 73  LFNTLI-IRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
           L+NT+I +       S DS   +R +I    + P+ Y+F+   K C     +  G  V  
Sbjct: 67  LYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRV 126

Query: 131 HVFVSGYDSDLHVQAALVNFY-------------------------------AKSNNVDV 159
           H    G +++L V  AL+  Y                               A+   +D 
Sbjct: 127 HAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDE 186

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           AR++FD MP+K VV+W +MISG  Q G+  EA+ +F+ M   G++P+  T    LAACA 
Sbjct: 187 ARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACAN 246

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN--VIAWT 277
           L  +D GRW+H +I    + +N  L   LI+MYA+CG +  A ++F+    L   V  W 
Sbjct: 247 LVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWN 306

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           AMI G+ +HG   EA+E+F +M+   V PN VTFVA+L+AC+H   V+EG   F SM   
Sbjct: 307 AMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASH 366

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
           Y + P +EH+ C+VDL GRAG L EA + +   +   P  A+W A+L ACK+HK+ ++G 
Sbjct: 367 YRVKPELEHYGCLVDLLGRAGRLKEAEEIISS-MHLTPDVAIWGALLSACKIHKDAEMGE 425

Query: 398 EVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKN 457
            V + +  ++P + G +V+L+NIY+L G  +    +R  + + G KK  G S++E++   
Sbjct: 426 RVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNGMF 485

Query: 458 YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE-EEREYSLRYHSEKL 516
           + F +GD+SHP T ++Y +LDE++ + + AGY+PES   + ++++ E+RE +L  HSEKL
Sbjct: 486 HQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETALLKHSEKL 545

Query: 517 ALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSC 576
           A+AFGLM T+P   IRIVKNLR+C DCH AIKFIS   +REIIVRDR+R+HHFK G+CSC
Sbjct: 546 AIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSC 605

Query: 577 LDYW 580
            DYW
Sbjct: 606 NDYW 609


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/573 (40%), Positives = 342/573 (59%), Gaps = 13/573 (2%)

Query: 17  AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL---VCDAGFITYAQRIFF-CIP-SP-D 70
           A P L   +Q+HA  + AG   S  +L K L        A  + YA  +    +P  P D
Sbjct: 24  AAPSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLD 83

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
            F  NT++   + +     +L  +RR +     P  +T+  +I++CA L  L  G  +H 
Sbjct: 84  PFPLNTVLRIAAGSPRPRVALELHRRRLAL---PDTHTYPPLIQACARLLALREGECLHA 140

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNSMISGYEQNGFA 188
               +G+ + + VQ +LV+ Y      + A KVFD MP   +++V+WNSM++ +  NG  
Sbjct: 141 EAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRP 200

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
            E + +F  M      PD  T V VL ACA+ G + LGR VH ++   GL  N  ++ +L
Sbjct: 201 NEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNAL 260

Query: 249 INMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           I++YA+CG+V+ AR IF+ M     V++WT++I G   +G+G EA+ELF  M    + P 
Sbjct: 261 IDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPT 320

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            +T V VL AC+H GLV +G R F  M+++YG+ P +EH  CMVDL GRAG + EAY ++
Sbjct: 321 EITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYI 380

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
             +  E P   VW  +LG+C MHK  +LG    E L+ ++P + G YV+LSN+YA  G  
Sbjct: 381 ITMPLE-PNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMW 439

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
             V V+R  M++  ++K+ G+S VE+    Y F MGD+SHP + +IY+ L E+  R R  
Sbjct: 440 ADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRRE 499

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           GY+P + + + ++EEEE+E +L YHSE+LA+AF L+++ PG+ IRI+KNLRMC DCH A 
Sbjct: 500 GYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAF 559

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             IS   +REIIVRDR RFHHF+ G+CSC DYW
Sbjct: 560 NLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/543 (38%), Positives = 339/543 (62%), Gaps = 1/543 (0%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           R+  M   +++ +   G I  +QR+F  +   DS  +  +I    +     ++L  +R M
Sbjct: 202 RNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREM 261

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
            ++  +   +TF +V+ +C  L  L  G+ +H +V  + +  ++ V +ALV+ Y+K  ++
Sbjct: 262 RLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSI 321

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
             A  VF RMP K+V++W +M+ GY QNGF++EA+ +F  M+  GV PD  T   V+++C
Sbjct: 322 KSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSC 381

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
           A L  ++ G   H   +  GL   + ++ +LI +Y +CG+   +  +F  M+  + ++WT
Sbjct: 382 ANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWT 441

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           A+++GY   G   E + LF RM AHG++P+ VTF+ VLSAC+ AGLV++G + F SM +E
Sbjct: 442 ALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKE 501

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
           +G++P V+H  C++DL GRAG L EA  F+ ++    P    W  +L +C++H + ++G 
Sbjct: 502 HGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCH-PDVVGWATLLSSCRVHGDMEIGK 560

Query: 398 EVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKN 457
             A+ L+++EP+NP  YV+LS++YA  G+ D+V  +R  M  K ++K  GYS ++   K 
Sbjct: 561 WAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKV 620

Query: 458 YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLA 517
           ++FS  D+S P   +IY  L++L  +  E GYVP+  S +H++EE E+   L +HSEKLA
Sbjct: 621 HVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLA 680

Query: 518 LAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCL 577
           +AFGL+   PG+ IR++KNLR+C DCH+A KFIS  T REI+VRD +RFH FK G+CSC 
Sbjct: 681 IAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCG 740

Query: 578 DYW 580
           D+W
Sbjct: 741 DFW 743



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 138/265 (52%), Gaps = 2/265 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+HA++I   +  +  + + L+ +      I  A+ +F  +P  +   +  +++   + 
Sbjct: 290 KQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQN 349

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            FS +++  +  M  + + P ++T  +VI SCA+L+ L  G   HC   VSG  S + V 
Sbjct: 350 GFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVS 409

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL+  Y K  + + + ++F  M  +  V+W ++++GY Q G A E IGLF  M   G+ 
Sbjct: 410 NALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLK 469

Query: 205 PDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           PD  T + VL+AC++ G ++ G ++    I   G+   V   T +I++  R G + +AR 
Sbjct: 470 PDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARN 529

Query: 264 -IFDMMSELNVIAWTAMISGYGMHG 287
            I +M    +V+ W  ++S   +HG
Sbjct: 530 FINNMPCHPDVVGWATLLSSCRVHG 554



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 162/385 (42%), Gaps = 84/385 (21%)

Query: 39  SRSMLTKLLSLVCDAGFITYAQR----IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFY 94
           S +    LL L C++   T A++    I   I  P++FL N LI                
Sbjct: 4   SSNYYASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLIT--------------- 48

Query: 95  RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154
                                 A+  + NL  A H HVF      +L     +++ Y+K 
Sbjct: 49  ----------------------AYYKLGNLAYA-H-HVFDHIPQPNLFSWNTILSVYSKL 84

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM-RDFGVNPDSTTCVCV 213
             +   +++F+ MP +  V+WN  ISGY   G   +A+ ++ LM +D  +N +  T   +
Sbjct: 85  GLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTM 144

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           L  C++   +DLGR ++  I+  G   +V + + L++MY + G +  A+  FD M E NV
Sbjct: 145 LILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNV 204

Query: 274 -------------------------------IAWTAMISGYGMHGYGTEAVELFHRMRAH 302
                                          I+WT MI+G   +G   EA+++F  MR  
Sbjct: 205 VMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLA 264

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
           G   +  TF +VL+AC     + EG ++ A  +R ++     V     +VD++ +     
Sbjct: 265 GFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHK--DNVFVGSALVDMYSKC---- 318

Query: 362 EAYKFVKDVIGEKPAPAV--WTAML 384
            + K  + V    P   V  WTAML
Sbjct: 319 RSIKSAETVFKRMPQKNVISWTAML 343


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/585 (38%), Positives = 354/585 (60%), Gaps = 12/585 (2%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAG-----YGRSRSMLTKLLSLVCDAGFIT 57
           N +     Y  ++K    L+  +QVH  ++  G     +  S  + T  LS   D   + 
Sbjct: 27  NLKQKEQEYLCLVKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALS---DWNSMD 83

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLF-YRRMIVSNISPSNYTFSAVIKSC 116
           YA  IF  +  P +F FNT+I R    N + ++ ++ Y  M+   + P N+T+  V+K+C
Sbjct: 84  YACSIFQQLDEPTTFDFNTMI-RGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKAC 142

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
           A L+++  G  +H HVF  G + D++VQ +L+N Y K  +++++  +F RM  KSV +W+
Sbjct: 143 ARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWS 202

Query: 177 SMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           ++I+ +       E + LF ++ R+     + +  V VL+AC  LG   LGR  H  ++ 
Sbjct: 203 AIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLK 262

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
              ++NV + TSL++MY +CG++ K   +F  M+  N ++++ +ISG G+HGYG +A+++
Sbjct: 263 NITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQI 322

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355
           F  M   G+ P++VT+V+VLSAC+H+GLV EG  +F  M+ EY + P ++H+ CMVDL G
Sbjct: 323 FSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKG 382

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415
           RAGLL EA++ V+  +  K    +W ++L ACK+H N  LG   AE+L  +   NP  Y+
Sbjct: 383 RAGLLEEAFQLVQS-MPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFRLSSHNPSDYL 441

Query: 416 MLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQ 475
           +LSN+YA A + +    +R  MI +GL +  GYS VEV  K Y F   DKS+  +  IY+
Sbjct: 442 VLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVEVKSKVYKFVSQDKSYCKSGNIYK 501

Query: 476 YLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVK 535
            + ++  + R  GY+P++   M +++EEE+   L+ HS+KLA+AF L+ TS G  IRI++
Sbjct: 502 MIHQMEWQLRFEGYMPDTSQVMLDVDEEEKGERLKGHSQKLAIAFALIHTSQGSAIRIIR 561

Query: 536 NLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           NLRMC DCHS  K +S+   REI VRDR RFHHFK G+CSC DYW
Sbjct: 562 NLRMCNDCHSYTKLVSMIYEREITVRDRNRFHHFKDGNCSCRDYW 606


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/585 (37%), Positives = 340/585 (58%), Gaps = 6/585 (1%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           +  ++     Y  +LK     K L   ++VH+ L+  GY   R +   L+ +    G I 
Sbjct: 17  VDERREEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIA 76

Query: 58  YAQRIFFCI--PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
            A+ +F  I   + D   +N +I   ++     ++L  ++ M +  +  +  T    I +
Sbjct: 77  EARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDA 136

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           CA L     GR VH        +SD  V  +LVN + K  NVD AR VFD +P K++V W
Sbjct: 137 CASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTW 196

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           N+M++ Y QN   K+AI +F  M   GV PD+ T + ++ ACA L     GR VH+ I  
Sbjct: 197 NNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITA 256

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
            G+ ++V L T++++ Y +CG +  AR IFD + + N + W+A+++ Y  +GY TEA+EL
Sbjct: 257 SGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIEL 316

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355
           +H M   G+  N +TF+ +L AC+HAG   +G   F SM +++G++P  EH++ ++DL G
Sbjct: 317 YHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLG 376

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415
           R+G L  +   +  +  E P  + W A+LGAC+MH + D G  +AE +  ++PE+ G Y+
Sbjct: 377 RSGQLQLSEDLINSMPYE-PDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYI 435

Query: 416 MLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQ 475
           +LSN+Y+  GRMD     R  M  +G+ K  G S++EV  + + F    K HP    I+ 
Sbjct: 436 LLSNLYSSTGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHA 495

Query: 476 YLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVK 535
            ++ L  R +EAGYV +  + + ++EEEE+E  L YHSE+LA+AFGL+ T PG  + IVK
Sbjct: 496 EIERLKARVKEAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVK 555

Query: 536 NLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           NLR+C DCH+A+K IS    R+I+VRD +RFHHF+ G+CSC DYW
Sbjct: 556 NLRVCFDCHAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/511 (41%), Positives = 316/511 (61%), Gaps = 1/511 (0%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   +N+LI+   +  F  D+L F+++M   ++    YT  +V+ S A + ++    +VH
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
           C +  +G+++   V  AL++ YAK   +D A  VF +M DK VV+W S+++GY  NG  +
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           EAI LF  MR  GV PD      VL+ACA+L  +D G+ +H  +V  GL+ ++ +  SL+
Sbjct: 125 EAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLV 184

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
            MYA+CG++  A   FD M   +VI+WTA+I GY  +G G  +++ + +M A G +P+ +
Sbjct: 185 TMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYI 244

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           TF+ +L AC+H GL+  G   F +M + YG+ PG EH+ CM+DL GR+G L EA   +  
Sbjct: 245 TFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQ 304

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
           ++   P   VW A+L AC++HK  +LG   A++L  +EP N   YVMLSN+Y+ AG+ + 
Sbjct: 305 MV-VAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWED 363

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
              +R +M  +G+ K  GYS +E + K   F   D++HP  NEIY  +DE++   +EAGY
Sbjct: 364 AARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGY 423

Query: 490 VPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKF 549
           VP+   A+H+ ++E +E  L YHSEKLA+AFGL+    G  IRI KNLR+C DCH+A+K+
Sbjct: 424 VPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKY 483

Query: 550 ISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            S    R II+RD   FHHF  G CSC DYW
Sbjct: 484 TSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 139/279 (49%), Gaps = 5/279 (1%)

Query: 13  AILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           ++L +   +K +Q    VH  +I  G+   + +   L+ +    G +  A  +F  +   
Sbjct: 46  SVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDK 105

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   + +L+   S      +++  + +M +S + P     ++V+ +CA L++++ G+ +H
Sbjct: 106 DVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIH 165

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
             +  SG +S L V  +LV  YAK  ++  A + FD MP + V++W ++I GY QNG  K
Sbjct: 166 ATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGK 225

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG-QGLDVNVVLATSL 248
            ++  ++ M   G  PD  T + +L AC+  G +  GR   E +    G+         +
Sbjct: 226 HSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACM 285

Query: 249 INMYARCGNVSKAREIFD-MMSELNVIAWTAMISGYGMH 286
           I++  R G +++A+ + + M+   + + W A+++   +H
Sbjct: 286 IDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVH 324


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/591 (37%), Positives = 351/591 (59%), Gaps = 36/591 (6%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            +Q+HAHLI A   ++  + T+L+ +  + G + YA+ IF  +   +++ +N++I    + 
Sbjct: 499  RQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQN 558

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
              + ++L  +++M ++ I P  ++ S+++ SC  LS    GR +H  +  +  + +  +Q
Sbjct: 559  GETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ 618

Query: 145  AALVNFYAKSNNVDVARKV-------------------------------FDRMPDKSVV 173
              LV+ YAK  ++D A KV                               FD+M  ++  
Sbjct: 619  VVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTA 678

Query: 174  AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
             WNS+++GY   G  KE+   F  M +  +  D  T V ++  C+ L  ++ G  +H  I
Sbjct: 679  LWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLI 738

Query: 234  VGQG-LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
            + +G ++ +VVL T+L++MY++CG ++KAR +FD M+  N+++W AMISGY  HG   EA
Sbjct: 739  IKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEA 798

Query: 293  VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
            + L+  M   G+ PN VTF+A+LSAC+H GLV+EG R+F SM+++Y +    EH+ CMVD
Sbjct: 799  LILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVD 858

Query: 353  LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
            L GRAG L +A +FV+ +  E P  + W A+LGAC++HK+ D+G   A+ L  ++P+NPG
Sbjct: 859  LLGRAGRLEDAKEFVEKMPIE-PEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPG 917

Query: 413  HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
             YV++SNIYA AGR   VE +R +M  KG+KK  G S +E++ +  +F  G K+HP T E
Sbjct: 918  PYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEE 977

Query: 473  IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRY---HSEKLALAFGLMRTSPGM 529
            IY  L  L  + +  GY+P++   +  +++ + E    Y   HSE+LAL+ GL+      
Sbjct: 978  IYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKS 1037

Query: 530  TIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            TIR+ KNLR+C DCH+A KFIS  T R II RD  RFHHF+ G CSC DYW
Sbjct: 1038 TIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 210/460 (45%), Gaps = 51/460 (11%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT---YAQRIFFCIPSPDSFLFNTLIIRN 81
           + +H  +I  GY     ++TK+L L   +G +    YA+++F  +P  +   +NT+I+  
Sbjct: 91  KSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAY 150

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           ++ +   + L  Y RM  S      +TF +VIK+C  +  +   R +   V  +G + +L
Sbjct: 151 ARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNL 210

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V  ALV+ YA+   +D A    D +   SVV WN++I+GY +    +EA G+F+ M   
Sbjct: 211 FVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKI 270

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           GV PD+ T    L  C  L   D G+ VH  ++  G   +  +  +LI+MYA+C +    
Sbjct: 271 GVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESC 330

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA-- 319
            ++FD M E N + W ++IS     G+  +A+ LF RM+  G + N     ++L A A  
Sbjct: 331 LKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGL 390

Query: 320 ---------------------------------HAGLVQEGHRVFASM--RQEY---GLL 341
                                              G+V+E H+VF S+  R E     LL
Sbjct: 391 ADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALL 450

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
            G           G+A    E Y  ++   G +P    +T +L  C   +N + G ++  
Sbjct: 451 AGYVQE-------GKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHA 503

Query: 402 HLLSVE-PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
           HL+     +N      L ++Y+  GR++  + + N M ++
Sbjct: 504 HLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAER 543



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 191/402 (47%), Gaps = 42/402 (10%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H HL+         + + L+ +    G +  A ++F  +   +   +N L+    + 
Sbjct: 397 RELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQE 456

Query: 85  NFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
             + ++L  Y  M   + I P  +TF+ ++  CA+    N GR +H H+  +    ++ V
Sbjct: 457 GKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIV 516

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
           +  LV+ Y++   ++ A+++F+RM +++  +WNSMI GY+QNG  +EA+ LF  M+  G+
Sbjct: 517 ETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGI 576

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            PD  +   +L++C  L D   GR +H FIV   ++   +L   L++MYA+CG++  A +
Sbjct: 577 KPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWK 636

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           ++D   + +VI    M+S +   G   +A  LF +M     + N   + ++L+  A+ GL
Sbjct: 637 VYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQME----QRNTALWNSILAGYANKGL 692

Query: 324 VQEGHRVFASMRQ---EYGL------------LPGVEH--------------------HV 348
            +E    F  M +   EY +            LP +EH                      
Sbjct: 693 KKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLET 752

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            +VD++ + G + +A     ++ G+      W AM+     H
Sbjct: 753 ALVDMYSKCGAITKARTVFDNMNGKNIVS--WNAMISGYSKH 792



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 135/274 (49%), Gaps = 11/274 (4%)

Query: 55  FITYAQRIFFCIPSPDSFLFN------TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYT 108
           F  +  R FF +P+P+S  F+      T  I+       +           S+++P  Y 
Sbjct: 16  FNCHYSRHFFLLPNPNSKSFSAHFGHTTTTIKLKFNGPDSPKPTSIHTKPASDVNPLPY- 74

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD---VARKVFD 165
            S++I+ C   +    G+++H  +  +GY+ D ++   ++  YA+S  +D    ARK+F+
Sbjct: 75  -SSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP++++ AWN+MI  Y +     E + L+  MR  G   D  T   V+ AC  + D+  
Sbjct: 134 EMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGG 193

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
            R +   +V  GL+ N+ +  +L++ YAR G +  A    D +   +V+ W A+I+GY  
Sbjct: 194 VRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVK 253

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
                EA  +F RM   GV P+N TF + L  C 
Sbjct: 254 ILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCG 287


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/525 (43%), Positives = 324/525 (61%), Gaps = 42/525 (8%)

Query: 94  YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153
           Y RM    +   N+T   V+KSCA LS + +GR VH      G + D +V A+L++ Y K
Sbjct: 95  YARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK 154

Query: 154 SNNVDVARKVFD-------------------------------RMPDKSVVAWNSMISGY 182
              +  ARK+FD                               RM  +++V+W +MISGY
Sbjct: 155 CGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 214

Query: 183 EQNGFAKEAIGLFNLMRDFG--VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
            QNGFA++A+GLF+ M   G  + P+  T V VL ACAQ   ++ GR +H+F  G GL +
Sbjct: 215 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHL 274

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHR 298
           N  + T+L  MYA+C ++ +AR  FDM+++   N+IAW  MI+ Y  HG G EAV +F  
Sbjct: 275 NSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFEN 334

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M   GV+P+ VTF+ +LS C+H+GL+  G   F  M   + + P VEH+ C+VDL GRAG
Sbjct: 335 MLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAG 394

Query: 359 LLNEAYKFVKDVIGEKP---APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415
            L EA    K++I + P    P+VW A+L AC+ H+N ++    A  L  +EP+N G+YV
Sbjct: 395 RLVEA----KELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYV 450

Query: 416 MLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQ 475
           +LSN+YA AG  + V+ +R ++  +G+KK  G S +E++ K++LF   DKSHP   EIY+
Sbjct: 451 LLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYK 510

Query: 476 YLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVK 535
           +L+ L  + + AGY+P++   +H++ EEE+EY+L  HSEKLA+AFGL+ T PG+ +R+ K
Sbjct: 511 FLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTK 570

Query: 536 NLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           NLR+C DCH+A KFIS    REIIVRD  RFH FK GSCSC DYW
Sbjct: 571 NLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/536 (41%), Positives = 333/536 (62%), Gaps = 20/536 (3%)

Query: 62   IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            +F  +P  D+  +NT+I    +      +L    +M+ +  + +  TFS  +   + LS+
Sbjct: 476  LFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSV 535

Query: 122  LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV--------- 172
            L LG+ +H  V   G   D  V+ +L++ Y K   ++ A  +F  +P +S          
Sbjct: 536  LGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCD 595

Query: 173  ------VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
                  V+W+SM+SGY QNG  ++A+  F+ M    V  D  T   V++ACA  G ++LG
Sbjct: 596  DAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELG 655

Query: 227  RWVHEFI--VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
            R VH +I  +G GLDV   L +S+I+MY +CG+++ A  IF+   + NV+ WT+MISG  
Sbjct: 656  RQVHGYIQKIGHGLDV--FLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCA 713

Query: 285  MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
            +HG G EAV LF  M   G+ PN V+FV VL+AC+HAGL++EG + F  MR+ YG+ PG 
Sbjct: 714  LHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGA 773

Query: 345  EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
            EH  CMVDL+GRAG LNE  +F+ +    K + +VW + L +C++HKN ++G+ V + LL
Sbjct: 774  EHFTCMVDLYGRAGRLNEIKEFIHNNAISKLS-SVWRSFLSSCRVHKNIEMGIWVCKKLL 832

Query: 405  SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
             +EP + G Y++ S+I A   R +    +R++M Q+G+KK+   S +++  + + F MGD
Sbjct: 833  ELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGD 892

Query: 465  KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
            +SHP   +IY YLDEL+GR +E GY  +    M ++E+E+R+  L YHSEKLA+A+G++ 
Sbjct: 893  RSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIIS 952

Query: 525  TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            T+PG  IR++KNLR+C+DCH+ IK+ S    REII+RD  RFHHFK G CSC DYW
Sbjct: 953  TAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 192/417 (46%), Gaps = 64/417 (15%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +HA LI  G    R     LL+L   +  +  A ++F  IP  D F +  LI   ++   
Sbjct: 310 LHAKLIKNGCVGIRG--NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGL 367

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCA-HLSILNLGRAVHCHVFVSGYDSDLHVQA 145
           S D L  + +M    + P+ +T S V+KSC+ +++   +G+ +H  +  +G D D  +  
Sbjct: 368 SADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNN 427

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF---------- 195
           +++++Y K      A K+F  M +K  V+WN M+S Y Q G  ++++ LF          
Sbjct: 428 SILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAAS 487

Query: 196 ------NLMRD---------------FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
                  LMR+                G   +  T    L   + L  + LG+ +H  ++
Sbjct: 488 WNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVL 547

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFD--------MMSE-------LNVIAWTAM 279
             G+  +  +  SLI+MY +CG + KA  IF         M SE       +  ++W++M
Sbjct: 548 KVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSM 607

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           +SGY  +G   +A++ F  M    V  +  T  +V+SACA AG+++ G       RQ +G
Sbjct: 608 VSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELG-------RQVHG 660

Query: 340 LLPGVEHHV------CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            +  + H +       ++D++ + G LN+A+        +     +WT+M+  C +H
Sbjct: 661 YIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQ--AKDRNVVLWTSMISGCALH 715


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/579 (37%), Positives = 363/579 (62%), Gaps = 5/579 (0%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+S     +L      K L   + +H + +   +     + T LL +      + YA++I
Sbjct: 208 PNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKI 267

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSI 121
           F  +   +   ++ +I     ++   ++L  + +MI+ + + P+  T  +V+++CA L+ 
Sbjct: 268 FDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTD 327

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L+ GR +HC++   G   D+ +   L++ YAK   +D A + FD M  K  V++++++SG
Sbjct: 328 LSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSG 387

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             QNG A  A+ +F +M+  G++PD TT + VL AC+ L  +  G   H +++ +G   +
Sbjct: 388 CVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATD 447

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            ++  +LI+MY++CG +S ARE+F+ M   ++++W AMI GYG+HG G EA+ LFH + A
Sbjct: 448 TLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLA 507

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G++P+++TF+ +LS+C+H+GLV EG   F +M +++ ++P +EH +CMVD+ GRAGL++
Sbjct: 508 LGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLID 567

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA+ F++++  E P   +W+A+L AC++HKN +LG EV++ + S+ PE+ G++V+LSNIY
Sbjct: 568 EAHHFIRNMPFE-PDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIY 626

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           + AGR D    +R      GLKK  G S +E++   + F  GD+SH   ++I + L+EL+
Sbjct: 627 SAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELL 686

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              +  GY  E      ++EEEE+E  L YHSEKLA+AFG++    G  I + KNLR+C 
Sbjct: 687 VEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCG 746

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+AIKF+++ T REI VRD  RFHHFK G+C+C D+W
Sbjct: 747 DCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 214/407 (52%), Gaps = 13/407 (3%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y  +L+A  + K L   +++H H +        S+L KL  L      +  A+R+F  IP
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLL-FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           +P   L+N  IIR    N   D  +  Y  M+   + P+ YT+  V+K+C+ L  +  G 
Sbjct: 71  NPSVILWNQ-IIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H H  + G +SD+ V  ALV+FYAK   +  A+++F  M  + VVAWN+MI+G    G
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
              +A+ L   M++ G+ P+S+T V VL    +   +  G+ +H + V +  D  VV+ T
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGT 249

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM-RAHGVR 305
            L++MYA+C  +  AR+IFD+M   N ++W+AMI GY       EA+ELF +M     + 
Sbjct: 250 GLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMD 309

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           P  VT  +VL ACA    +  G ++   + +   +L  +  +  ++ ++ + G++++A +
Sbjct: 310 PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNT-LLSMYAKCGVIDDAIR 368

Query: 366 FVKDVIGEKPAPAV-WTAMLGACKMHKNFDLGVEVAE--HLLSVEPE 409
           F  ++    P  +V ++A++  C  + N  + + +     L  ++P+
Sbjct: 369 FFDEM---NPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 183/374 (48%), Gaps = 19/374 (5%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           ++++C     L   + +H H   +  ++D  V   L   Y   N V +AR++FD +P+ S
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           V+ WN +I  Y  NG    AI L++ M   GV P+  T   VL AC+ L  I+ G  +H 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
                GL+ +V + T+L++ YA+CG + +A+ +F  MS  +V+AW AMI+G  ++G   +
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCM 350
           AV+L  +M+  G+ PN+ T V VL     A  +  G  +    +R+ +    GV     +
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFD--NGVVVGTGL 251

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410
           +D++ +   L  A K + DV+G +   + W+AM+G           +E+ + ++  +  +
Sbjct: 252 LDMYAKCQCLLYARK-IFDVMGVRNEVS-WSAMIGGYVASDCMKEALELFDQMILKDAMD 309

Query: 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGY----STVEVDQKNYLFSMGDKS 466
           P    + S + A A   D         + +G K H       S +++   N L SM  K 
Sbjct: 310 PTPVTLGSVLRACAKLTD---------LSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKC 360

Query: 467 HPNTNEIYQYLDEL 480
               + I ++ DE+
Sbjct: 361 GVIDDAI-RFFDEM 373


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 346/578 (59%), Gaps = 36/578 (6%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           ++ S    L+SL   +G    A   F  +P  D   +N++I   S+  ++ ++L+ + +M
Sbjct: 206 KNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKM 265

Query: 98  I-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           +   ++ P N+T ++++ +CA+L  LN+G+ +H ++  +  ++   V  AL++ YAKS  
Sbjct: 266 LNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGG 325

Query: 157 VDVAR---------------------------------KVFDRMPDKSVVAWNSMISGYE 183
           V++AR                                 ++F+++ D+ VVAW +MI GY 
Sbjct: 326 VEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYV 385

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG   +A+ LF LM + G  P+S T   +L+  + L  ++ G+ +H   +  G      
Sbjct: 386 QNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPS 445

Query: 244 LATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           +  +LI MYA+ GN++ A+ +FD+ + +  +++WT+MI     HG G EA+ LF RM + 
Sbjct: 446 VTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSV 505

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G++P+++T+V VLSAC H GLV++G + +  M + + + P + H+ CM+DL+GRAGLL E
Sbjct: 506 GMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQE 565

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           AY F++ +  E P    W ++L +CK+HKN DL    AE LL ++P N G Y+ L+N+Y+
Sbjct: 566 AYLFIESMPIE-PDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYS 624

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             G+ +     R +M  +G++K  G S + +  + + F + D  HP  +EIY+ + E+  
Sbjct: 625 ACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWE 684

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             ++ G++P++ES +H+LEEE +E  L+YHSEKLA+AFGL+ T     +RI+KNLR+C D
Sbjct: 685 EIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCND 744

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CHSAIKFIS    REIIVRD  RFHHFK GSCSC DYW
Sbjct: 745 CHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 139/504 (27%), Positives = 225/504 (44%), Gaps = 103/504 (20%)

Query: 3   NKQPHSPAYEAILKAGPRLK-PL--QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           N    S  +  IL+   R+K P   + VH  +I  G      ++  L++     G + +A
Sbjct: 5   NSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFA 64

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSK-ANFSTDSLLFYR----------------------- 95
             +F  +P   +F +NTLI   +K  NF     L Y                        
Sbjct: 65  HHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFD 124

Query: 96  -------RMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
                  +MI   + PS +T S V+ SCA    L++GR +H  V   G  S + V  +L+
Sbjct: 125 NAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLL 184

Query: 149 NFYAKSNNVDVARKVFDRMPDKSVVAW-------------------------------NS 177
           N YAK  +  +A+ VFDRM  K++  W                               NS
Sbjct: 185 NMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNS 244

Query: 178 MISGYEQNGFAKEAIGLFN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI--- 233
           MISGY Q G+  EA+ +F+ ++ +  + PD+ T   +L+ACA L  +++G+ +H +I   
Sbjct: 245 MISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRA 304

Query: 234 -------VGQGL-----------------------DVNVVLATSLINMYARCGNVSKARE 263
                  VG  L                       ++N++  TSL++ Y + GNV  ARE
Sbjct: 305 ETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPARE 364

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           IF+ + + +V+AWTAMI GY  +G   +A+ELF  M   G  PN+ T  A+LS  +   +
Sbjct: 365 IFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTI 424

Query: 324 VQEGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           ++ G ++ AS ++      P V +   ++ ++ + G +N A K V D+   K     WT+
Sbjct: 425 LEHGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVA-KRVFDLPNGKKEIVSWTS 481

Query: 383 MLGACKMHKNFDLGVEVAEHLLSV 406
           M+ A   H      + + E +LSV
Sbjct: 482 MIMALAQHGLGKEAINLFERMLSV 505



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 63/299 (21%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M V N   S+  F+ ++++   +     GR+VHC +   G    +++   L+ FYAK+ +
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGY-------------------------------EQN 185
           +  A  VFD MP KS  +WN++ISGY                                Q 
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQF 120

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G    AI +F  M    V P   T   VL++CA    +D+GR +H F+V  GL   V +A
Sbjct: 121 GLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 246 TSLINMYARCGNVSKAREIFDMMS-------------------------------ELNVI 274
           TSL+NMYA+CG+   A+ +FD M+                               + +++
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 275 AWTAMISGYGMHGYGTEAVELFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           +W +MISGY   GY  EA+ +F +M     ++P+N T  ++LSACA+   +  G ++ A
Sbjct: 241 SWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHA 299



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 127/301 (42%), Gaps = 51/301 (16%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+S    A+L     L  L+   Q+HA  I AG   + S+   L+++    G I  A+R
Sbjct: 406 EPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKR 465

Query: 62  IFFCIPSPDSFL--FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           + F +P+    +  + ++I+  ++     +++  + RM+   + P + T+  V+ +C H+
Sbjct: 466 V-FDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHV 524

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
            ++  GR  +  +      +++H     ++ YA                         MI
Sbjct: 525 GLVEQGRKYYNMM------TEVHEIEPTLSHYA------------------------CMI 554

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE--FIVGQG 237
             Y + G  +EA   +  +    + PD+     +LA+C    + DL +   E   ++  G
Sbjct: 555 DLYGRAGLLQEA---YLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPG 611

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV-----IAWTAMISGYGMHGYGTEA 292
              N     +L N+Y+ CG    A +   +M +  V     I+W  + +   +H +G E 
Sbjct: 612 ---NSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKN--EVHAFGVED 666

Query: 293 V 293
           V
Sbjct: 667 V 667


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/589 (36%), Positives = 353/589 (59%), Gaps = 34/589 (5%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H H+I  G  + +S+   L+++    G I  A  +F  +P  D   + +++  N++A
Sbjct: 23  KKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQA 82

Query: 85  NFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
           N    +L  +  M   + + P +Y F+ ++K+CA L  +  G+ VH    VS    D  V
Sbjct: 83  NLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVV 142

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF------NL 197
           +++LV+ YAK    D+ R VFD +  K+ ++W +MISGY Q+G   +AI LF      NL
Sbjct: 143 KSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNL 202

Query: 198 -------------------------MRDFGVN-PDSTTCVCVLAACAQLGDIDLGRWVHE 231
                                    MR  G++  D      ++ A A L  + LG+ +H 
Sbjct: 203 LSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHC 262

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
            ++  G + ++ ++ +L++MYA+C +V  A++IF  M + ++++WT++I G   HG   E
Sbjct: 263 LVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEE 322

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           A+ L++RM + G++PN VTFV ++ AC+H GLV +G   F SM ++YG+ P ++H+ C++
Sbjct: 323 ALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLL 382

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411
           DL  R+G L EA   +K  +  KP  A W A+L AC  H+N  +G+ VA+HLLS++PE+P
Sbjct: 383 DLLSRSGHLEEAENLIK-AMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDP 441

Query: 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTN 471
             Y++LSNIYA A   + V  VR +M    +KK  GYS + + +++ +F  G+ SHP   
Sbjct: 442 STYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKE 501

Query: 472 EIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTI 531
           EI+  L+EL    ++ GY+P++ S +H+LE++E+E  L +HSE+LA+A+GL++  PGM +
Sbjct: 502 EIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIPGMVL 561

Query: 532 RIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            IVKNLR+C DCH+ +KFIS+   REI+VRD  R+HHFK G CSC ++W
Sbjct: 562 HIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNNFW 610



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           +++CA      +G+ +HCH+  +G D    +   L+N Y K   +  A  +F+++P +  
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH- 230
           ++W S+++   Q       + +F  M +  G+ PD     C++ ACA LG +  G+ VH 
Sbjct: 70  ISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHA 129

Query: 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
            FIV    D +VV  +SL++MYA+CG     R +FD +S  N I+WTAMISGY   G   
Sbjct: 130 TFIVSPVSDDDVV-KSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKL 188

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           +A++LF +M       N +++ A++S    +G   +   +F  MR +
Sbjct: 189 DAIQLFQKMPVK----NLLSWTALISGLVQSGNWVDSFYLFMEMRSK 231


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/460 (45%), Positives = 306/460 (66%), Gaps = 2/460 (0%)

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           + LG  +H  V  SG+ S ++VQ +L++ YA   +V  A KVFD+MP+K +VAWNS+I+G
Sbjct: 4   VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 63

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + +NG  +EA+ L+  M   G+ PD  T V +L+ACA++G + LG+ VH +++  GL  N
Sbjct: 64  FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRN 123

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           +  +  L+++YARCG V +A+ +FD M + N ++WT++I G  ++G+G EA+ELF  M +
Sbjct: 124 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMES 183

Query: 302 -HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G+ P  +TFV +L AC+H G+V+EG   F  MR+EY + P +EH  CMVDL  RAG +
Sbjct: 184 TEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQV 243

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
            +AY+++K  +  +P   +W  +LGAC +H + DL       +L +EP + G YV+LSN+
Sbjct: 244 KKAYEYIKS-MPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNM 302

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA   R   V+ +R  M++ G+KK  G+S VEV  + + F MGDKSHP ++ IY  L E+
Sbjct: 303 YASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEM 362

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
            GR R  GYVP+  +   ++EEEE+E ++ YHSEK+A+AF L+ T     I +VKNLR+C
Sbjct: 363 TGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVC 422

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH AIK +S   NREI+VRDR RFHHFK GSCSC DYW
Sbjct: 423 ADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 145/295 (49%), Gaps = 5/295 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + +H+ +I +G+G    +   LL L  + G +  A ++F  +P  D   +N++I   ++ 
Sbjct: 8   ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAEN 67

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++L  Y  M    I P  +T  +++ +CA +  L LG+ VH ++   G   +LH  
Sbjct: 68  GKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSS 127

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GV 203
             L++ YA+   V+ A+ +FD M DK+ V+W S+I G   NGF KEAI LF  M    G+
Sbjct: 128 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 187

Query: 204 NPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
            P   T V +L AC+  G +  G  +         ++  +     ++++ AR G V KA 
Sbjct: 188 LPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAY 247

Query: 263 E-IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
           E I  M  + NV+ W  ++    +HG    A   F R++   + PN+     +LS
Sbjct: 248 EYIKSMPMQPNVVIWRTLLGACTVHGDSDLAE--FARIQILQLEPNHSGDYVLLS 300



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 109/203 (53%), Gaps = 3/203 (1%)

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           + D+ LG  +H  ++  G    + +  SL+++YA CG+V+ A ++FD M E +++AW ++
Sbjct: 1   MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           I+G+  +G   EA+ L+  M + G++P+  T V++LSACA  G +  G RV   M +  G
Sbjct: 61  INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK-VG 119

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           L   +     ++DL+ R G + EA     +++ +      WT+++    ++      +E+
Sbjct: 120 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVS--WTSLIVGLAVNGFGKEAIEL 177

Query: 400 AEHLLSVEPENPGHYVMLSNIYA 422
            +++ S E   P     +  +YA
Sbjct: 178 FKYMESTEGLLPCEITFVGILYA 200


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/572 (38%), Positives = 350/572 (61%), Gaps = 6/572 (1%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLL-SLVCDAGFITYAQR 61
           P    Y  +LK   RL  ++Q   VHAHL+ + +  +  +L  ++ ++    G +  A+R
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P+ D   +  LI   S+ N   D+LL + +M+     P+++T S+++K+      
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHG 204

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L+ G  +H      GY S ++V +ALV+ YA+  ++D A+  FD MP KS V+WN++ISG
Sbjct: 205 LDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISG 264

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + + G  + A+ L   M+     P   T   VL+ACA +G ++ G+WVH  ++  GL + 
Sbjct: 265 HARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLI 324

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +  +L++MYA+ G++  A+ +FD + + +V++W  M++G   HG G E ++ F +M  
Sbjct: 325 AFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLR 384

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ PN ++F+ VL+AC+H+GL+ EG   F  M++ Y + P V H+V  VDL GR GLL+
Sbjct: 385 IGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLD 443

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
            A +F++++  E P  AVW A+LGAC+MHKN +LGV  AE    ++P + G  ++LSNIY
Sbjct: 444 RAERFIREMPIE-PTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIY 502

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AGR   V  VR +M + G+KK    S VE++   +LF   D++HP   EI    +E+ 
Sbjct: 503 ASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEIS 562

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
           G+ +E GYVP++   +  ++++ERE  L+YHSEKLALAF L+ T  G  IRI KN+R+C 
Sbjct: 563 GKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCG 622

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGS 573
           DCH+AIKF+S   +REIIVRD  RFH F+ GS
Sbjct: 623 DCHAAIKFVSKVVDREIIVRDTNRFHRFRDGS 654



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 45/379 (11%)

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY-DSDLHVQAALVNFYAKSNNVDV 159
           ++ P    +S ++K C  L  +  GR VH H+  S + D+ L +Q  +VN YAK   +D 
Sbjct: 82  SLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDD 141

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           AR++FD MP K +V W ++I+G+ QN   ++A+ LF  M   G  P+  T   +L A   
Sbjct: 142 ARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGS 201

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
              +D G  +H F +  G   +V + ++L++MYARCG++  A+  FD M   + ++W A+
Sbjct: 202 EHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNAL 261

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEY 338
           ISG+   G G  A+ L  +M+    +P + T+ +VLSACA  G +++G  V A M +   
Sbjct: 262 ISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGL 321

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH-------- 390
            L+  + +   ++D++ +AG +++A +    ++  KP    W  ML  C  H        
Sbjct: 322 KLIAFIGN--TLLDMYAKAGSIDDAKRVFDRLV--KPDVVSWNTMLTGCAQHGLGKETLD 377

Query: 391 ---KNFDLGVEVAE--------------------------HLLSVEPENPGHYVMLSNIY 421
              +   +G+E  E                              VEP+ P HYV   ++ 
Sbjct: 378 RFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVP-HYVTFVDLL 436

Query: 422 ALAGRMDRVE-VVRNIMIQ 439
              G +DR E  +R + I+
Sbjct: 437 GRVGLLDRAERFIREMPIE 455


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/527 (40%), Positives = 335/527 (63%), Gaps = 3/527 (0%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           I   +++F  +P  D   +NT+I  N++     ++L   + M   N+ P ++T S+++  
Sbjct: 149 IDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPI 208

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
               + +  G+ +H +    G+D D+ + ++L++ YAK   V+++   F  + ++  ++W
Sbjct: 209 FTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISW 268

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           NS+I+G  QNG   + +G F  M    V P   +   V+ ACA L  ++LG+ +H +I+ 
Sbjct: 269 NSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIR 328

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDM--MSELNVIAWTAMISGYGMHGYGTEAV 293
            G D N  +A+SL++MYA+CGN+  AR IF+   M + ++++WTA+I G  MHG+  +AV
Sbjct: 329 LGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAV 388

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
            LF  M   GV+P  V F+AVL+AC+HAGLV EG + F SM++++G+ PG+EH+  + DL
Sbjct: 389 SLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADL 448

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GRAG L EAY F+ + +GE+P  +VW+ +L AC+ HKN +L  +V   +L V+P N G 
Sbjct: 449 LGRAGRLEEAYDFISN-MGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGA 507

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           +V++SNIY+ A R      +R  M + GLKK    S +EV  K + F  GDKSHP  ++I
Sbjct: 508 HVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKI 567

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
            + L+ L+ +  + GYV ++   +H+++EE +   LR HSE+LA+AFG++ T+ G TIR+
Sbjct: 568 NEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRV 627

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +KN+R+CVDCH+AIKF++    REIIVRD  RFHHFK GSCSC DYW
Sbjct: 628 IKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 169/336 (50%), Gaps = 35/336 (10%)

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK-------- 153
           ISP  + F +++++       NL +++H  V   G+  DL+   AL+N Y+K        
Sbjct: 72  ISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPL 131

Query: 154 --------------SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
                         S  +D  RK+FDRMP + VV+WN++I+G  QNG  +EA+ +   M 
Sbjct: 132 HEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMG 191

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
              + PDS T   +L    +  ++  G+ +H + +  G D +V + +SLI+MYA+C  V 
Sbjct: 192 KENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVE 251

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            +   F ++S  + I+W ++I+G   +G   + +  F RM    V+P  V+F +V+ ACA
Sbjct: 252 LSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACA 311

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHH----VCMVDLFGRAGLLNEA-YKFVKDVIGEK 374
           H   +  G ++ A     Y +  G + +      ++D++ + G +  A Y F K  + ++
Sbjct: 312 HLTALNLGKQLHA-----YIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDR 366

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SVEP 408
              + WTA++  C MH +    V + E +L   V+P
Sbjct: 367 DMVS-WTAIIMGCAMHGHALDAVSLFEEMLVDGVKP 401


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/597 (39%), Positives = 345/597 (57%), Gaps = 38/597 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT--YAQRIFFCIPSPDSFLFNTLI 78
           L  ++QVHA +++ G  +S  +L KL+  +         Y   IF  +  P+ FL+N LI
Sbjct: 59  LTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNALI 118

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH-VFVSGY 137
                     +S  FY  M    + P ++TF+A+ K+C     + LGR +H   + V G+
Sbjct: 119 RGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGF 178

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV------------------------- 172
             DLHV  ++++ Y K   ++  RKVFD MP++ V                         
Sbjct: 179 GEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDG 238

Query: 173 ------VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
                 VAW  M+SG+ QN   +EAI  F  M++FGV  D  T + V++ACAQLG     
Sbjct: 239 LPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYA 298

Query: 227 RWVHEFIVGQ--GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
            W+ +       G   +VV+ ++LI+MY++CG+V  A  +F  M E NV ++++MI G+ 
Sbjct: 299 DWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFA 358

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
           MHG   +A++LF  M    ++PN VTF+ VL+AC+HAG+V++G ++F  M + YG+ P  
Sbjct: 359 MHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSA 418

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           +H+ CMVDL GRAG L EA++ VK +  E P   VW A+LGAC++HK+ D+    A HL 
Sbjct: 419 DHYTCMVDLLGRAGRLQEAHELVKTMPIE-PHGGVWGALLGACRIHKSPDIAAIAANHLF 477

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKN-YLFSMG 463
            +EP   G+Y++L+NIYA  GR + V  VR +M  +GL+K+  +S +E ++   + F  G
Sbjct: 478 ELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSG 537

Query: 464 DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLM 523
           D +HP + EI Q L++L+ R    GY P   S  +++ +E++   L  HSEKLALAFGL+
Sbjct: 538 DMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLI 597

Query: 524 RTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            T PG  IRIVKNLR+C DCHS I   S  T REIIVRD +RFHHF  G CSC ++W
Sbjct: 598 STIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/582 (40%), Positives = 359/582 (61%), Gaps = 11/582 (1%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIF 63
            +  A  A+L+    LK L+++HAH+IV+G      +  KLL+   +  +G + YAQ +F
Sbjct: 2   SNEKAILALLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLF 61

Query: 64  FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS-PSNYTFSAVIKSCAHLSIL 122
             +  P +  +N++I   ++++   D+++FY +M+  + S P  +TFS V+K+C  +   
Sbjct: 62  HQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAE 121

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
              + VH  V   GYD+D+ V   LV  Y+   +V +AR+VFD+MP + +VAWN+MIS +
Sbjct: 122 RKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCF 181

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q G  +EA+  +N MR   V+ D  T V ++++CA LG +++G  +H F    GLD ++
Sbjct: 182 SQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSL 241

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +  +LI+MYA+CG++ +A  IFD M   ++  W +MI GYG+HG G+EA+  F +M   
Sbjct: 242 YVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEA 301

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
            ++PN VTF+ +L  C+H GLVQEG + F  M  ++ L P V+H+ C+VDL+GRAG L++
Sbjct: 302 RIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDK 361

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A + V +         +W  +LG+CK+HKN  +G      L  +   + G  ++L+ IY 
Sbjct: 362 ALEIVSN--SSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIY- 418

Query: 423 LAGRMDRVEV--VRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
            AG  D+  V  +R ++  +G K   G+S +E+ ++ + F + DKSH  + E+Y+ L E+
Sbjct: 419 -AGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREV 477

Query: 481 MGRCREAGYV-PESESAMHELEE-EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           + +    GYV  ES S++  L   E  + S  YHSEKLA+AFGL RT+ G  IRIVKNLR
Sbjct: 478 IHQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLR 537

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCHS IK +SVA NREIIVRDR+RFHHFK G CSC DYW
Sbjct: 538 VCRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/567 (39%), Positives = 349/567 (61%), Gaps = 22/567 (3%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           QVH  +I +G   +  +   ++++   +  ++ A+ +F  + + ++  +N++I     A 
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMI-----AG 268

Query: 86  FSTDSL------LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
           F T+ L      LFYR M +  +  +   F+ VIK CA++  ++  + +HC V  +G D 
Sbjct: 269 FVTNGLDLEAFELFYR-MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF 327

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPD-KSVVAWNSMISGYEQNGFAKEAIGLF-NL 197
           DL+++ AL+  Y+K + +D A K+F  M   ++VV+W ++ISGY QNG    A+ LF  +
Sbjct: 328 DLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQM 387

Query: 198 MRDFGVNPDSTTCVCVLAACAQ-LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            R+ GV P+  T   VL ACA     ++ G+  H   +  G    + ++++L+ MYA+ G
Sbjct: 388 RREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRG 447

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
           N+  A E+F    + ++++W +MISGY  HG G +++++F  MR+  +  + +TF+ V+S
Sbjct: 448 NIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVIS 507

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC HAGLV EG R F  M ++Y ++P +EH+ CMVDL+ RAG+L +A     D+I + P 
Sbjct: 508 ACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAM----DLINKMPF 563

Query: 377 PA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVV 433
           PA   +W  +L AC++H N  LG   AE L+S++P++   YV+LSNIYA AG       V
Sbjct: 564 PAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKV 623

Query: 434 RNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPES 493
           R +M  K +KK  GYS +EV  K + F  GD SHP ++ IY  L+EL  R ++AGY P++
Sbjct: 624 RKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDT 683

Query: 494 ESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVA 553
           +  +H++EEE +E  L  HSE+LA+AFGL+ T PG  I+IVKNLR+C DCH+ IK IS  
Sbjct: 684 KYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKI 743

Query: 554 TNREIIVRDRLRFHHFKRGSCSCLDYW 580
             R+I+VRD  RFHHFK GSCSC DYW
Sbjct: 744 EGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 191/390 (48%), Gaps = 4/390 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH   I  G+    S+ T L+ +      +   +R+F  +   +   + +L+    + 
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             +  +L  + +M +  I P+ +TF+AV+   A    +  G  VH  V  SG DS + V 
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            ++VN Y+KS  V  A+ VFD M +++ V+WNSMI+G+  NG   EA  LF  MR  GV 
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
              T    V+  CA + ++   + +H  ++  G D ++ + T+L+  Y++C  +  A ++
Sbjct: 292 LTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKL 351

Query: 265 FDMMSEL-NVIAWTAMISGYGMHGYGTEAVELFHRM-RAHGVRPNNVTFVAVLSACAHAG 322
           F MM  + NV++WTA+ISGY  +G    A+ LF +M R  GV PN  TF +VL+ACA   
Sbjct: 352 FCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPT 411

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
              E  + F S   + G    +     +V ++ + G +  A +  K  +        W +
Sbjct: 412 ASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVS--WNS 469

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           M+     H      +++ E + S   E  G
Sbjct: 470 MISGYAQHGCGKKSLKIFEEMRSKNLELDG 499



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 144/263 (54%)

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           ++Q++F   P       N L+   S+ + + ++L  +  +  S       + S V+K C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            L    +G+ VHC     G+  D+ V  +LV+ Y K+ +V+   +VFD M  K+VV+W S
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +++GY QNG  ++A+ LF+ M+  G+ P+  T   VL   A  G ++ G  VH  ++  G
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           LD  + +  S++NMY++   VS A+ +FD M   N ++W +MI+G+  +G   EA ELF+
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 298 RMRAHGVRPNNVTFVAVLSACAH 320
           RMR  GV+     F  V+  CA+
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCAN 306



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 127/227 (55%), Gaps = 3/227 (1%)

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           ++++FD  P + +   N ++  + +N   KEA+ LF  +R  G   D ++  CVL  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           L D  +G+ VH   +  G   +V + TSL++MY +  +V     +FD M   NV++WT++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           ++GY  +G   +A++LF +M+  G++PN  TF AVL   A  G V++G +V  +M  + G
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVH-TMVIKSG 223

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           L   +     MV+++ ++ ++++A K V D +  + A + W +M+  
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDA-KAVFDSMENRNAVS-WNSMIAG 268


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/578 (37%), Positives = 346/578 (59%), Gaps = 36/578 (6%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           R+ S    ++SL  + G +  A   F  +   D   +N++I   ++  F  ++L F+  +
Sbjct: 171 RNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSI 230

Query: 98  IV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           +  +++ P  ++ ++ + +CA+L  L+ G+ +H ++  + +D+   V  AL++ YAKS  
Sbjct: 231 LKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGG 290

Query: 157 VDVARKV---------------------------------FDRMPDKSVVAWNSMISGYE 183
           V++AR++                                 F+ + D  VVAW +MI GY 
Sbjct: 291 VEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYV 350

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG   +AI +F  M   G  P+S T   +L+A + +  ++ G+ +H   +  G  ++  
Sbjct: 351 QNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPS 410

Query: 244 LATSLINMYARCGNVSKAREIFDMMSE-LNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           +  +L  MYA+ G+++ AR++F+++ +  + ++WT+MI     HG G EA+ELF +M   
Sbjct: 411 VGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTL 470

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G++P+++T+V VLSAC H GLV++G   F  M+  + + P + H+ CMVDLFGRAGLL E
Sbjct: 471 GIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQE 530

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           AYKFV+++  E P    W ++L +CK++KN DL    AE LL +EP N G Y  L+N+Y+
Sbjct: 531 AYKFVENMPME-PDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYS 589

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             G+ D    +R +M  +G+KK  G S V++  K ++F + D  HP  +EIY+ +D++  
Sbjct: 590 SCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWK 649

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             ++ G+ P++ES +H+LE E ++  LRYHSEKLA+AFG++ T    T+RI+KNLR+C D
Sbjct: 650 EIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCND 709

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+AIKFIS   +REIIVRD  RFHHFK GSCSC DYW
Sbjct: 710 CHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 216/441 (48%), Gaps = 71/441 (16%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           +LS     G +  A ++F  IP  DS  + T+I+  ++     D++  +  M+   + P+
Sbjct: 47  ILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPT 106

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            +T + V+ SCA      +G+ VH  V   G  + + V  +L+N YAK+ ++ +A+ VFD
Sbjct: 107 QFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFD 166

Query: 166 RMPDKSVVAW-------------------------------NSMISGYEQNGFAKEAIGL 194
           RM  ++  +W                               NSMI+G  Q+GF  EA+  
Sbjct: 167 RMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQF 226

Query: 195 F-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI----------VGQGL----- 238
           F ++++D  + PD  +    L+ACA L  +  G+ +H +I          VG  L     
Sbjct: 227 FSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYA 286

Query: 239 ------------------DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
                             D++V+  T+L+N Y + G+++ AR+IF+ + + +V+AWTAMI
Sbjct: 287 KSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMI 346

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYG 339
            GY  +G   +A+E+F  M + G RPN+ T  A+LSA +    +  G ++ AS +R    
Sbjct: 347 VGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEA 406

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           L P V +   +  ++ +AG +N A K V +++ +      WT+M+ A   H   +  +E+
Sbjct: 407 LSPSVGN--ALTTMYAKAGSINGARK-VFNLLRQNRDTVSWTSMIMALAQHGLGEEAIEL 463

Query: 400 AEHLLS--VEPENPGHYVMLS 418
            E +L+  ++P++  +  +LS
Sbjct: 464 FEQMLTLGIKPDHITYVGVLS 484



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 63/247 (25%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM--RD---- 200
           L+N YAK+     A  +F+ MP K+  +WN+++SGY + G  ++A  +F+L+  RD    
Sbjct: 16  LMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSW 75

Query: 201 ----FGVN---------------------PDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
                G N                     P   T   VLA+CA  G   +G+ VH F+V 
Sbjct: 76  TTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVK 135

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFD----------------------------- 266
            GL   V +A SL+NMYA+ G++  A+ +FD                             
Sbjct: 136 LGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQ 195

Query: 267 --MMSELNVIAWTAMISGYGMHGYGTEAVELFHR-MRAHGVRPNNVTFVAVLSACAHAGL 323
             ++SE ++++W +MI+G   HG+  EA++ F   ++   ++P+  +  + LSACA+   
Sbjct: 196 FELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEK 255

Query: 324 VQEGHRV 330
           +  G ++
Sbjct: 256 LSFGKQI 262



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 95/196 (48%), Gaps = 9/196 (4%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+S    A+L A   +  L   +Q+HA  I +G   S S+   L ++   AG I  A++
Sbjct: 371 RPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARK 430

Query: 62  IFFCI-PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           +F  +  + D+  + ++I+  ++     +++  + +M+   I P + T+  V+ +C H  
Sbjct: 431 VFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGG 490

Query: 121 ILNLGRA-VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSM 178
           ++  GR+       V   D  L   A +V+ + ++  +  A K  + MP +  V+AW S+
Sbjct: 491 LVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSL 550

Query: 179 ISG---YEQNGFAKEA 191
           +S    Y+    AK A
Sbjct: 551 LSSCKVYKNVDLAKVA 566



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 3/138 (2%)

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           ++++ YA+ G + KA ++FD++   + ++WT +I GY   G   +A+++F  M    V P
Sbjct: 46  TILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLP 105

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
              T   VL++CA  G    G +V  S   + GL   V     +++++ + G L  A K 
Sbjct: 106 TQFTLTNVLASCAATGSRGIGKKVH-SFVVKLGLHACVPVANSLLNMYAKTGDLKMA-KV 163

Query: 367 VKDVIGEKPAPAVWTAML 384
           V D +  +   + W AM+
Sbjct: 164 VFDRMKLRNTSS-WNAMI 180


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/569 (38%), Positives = 333/569 (58%), Gaps = 15/569 (2%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVC--------------DAGFITYAQRIFFCIPSPDS 71
            +HA  + +G    R     LL+L C               A  +   +++F  +P  D 
Sbjct: 79  SLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDV 138

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
             +NTL++  +++    ++L   R M      P ++T S+V+   A  + +  G  +H  
Sbjct: 139 VSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGF 198

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
              +G+  D+ V ++L++ YA     D + KVFD +P +  + WNSM++G  QNG   EA
Sbjct: 199 ATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEA 258

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           +GLF  M   G+ P   T   ++ AC  L  + LG+ +H +++  G D NV +++SLI+M
Sbjct: 259 LGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDM 318

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           Y +CGNVS AR IFD +   ++++WTAMI G+ +HG   EA+ LF RM    ++PN++TF
Sbjct: 319 YCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITF 378

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           +AVL+AC+HAGLV +G + F SM   YG++P +EHH  + D  GR G L EAY F+   +
Sbjct: 379 LAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISG-M 437

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
             KP  +VW+ +L ACK+HKN  L  EVA+ +  +EP + G +++LSN Y+ +GR +   
Sbjct: 438 KIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAA 497

Query: 432 VVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVP 491
            +R  M +KG++K    S +EV  K ++F   DKSHP    I   L+    +    GYVP
Sbjct: 498 HLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVP 557

Query: 492 ESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFIS 551
            ++    ++EEE++   L  HSEKLA+ FG++ T PG TIR++KNLR+CVDCH+  KFIS
Sbjct: 558 NTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHTVTKFIS 617

Query: 552 VATNREIIVRDRLRFHHFKRGSCSCLDYW 580
               REI++RD  RFHHFK G CSC D+W
Sbjct: 618 KIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 150/301 (49%), Gaps = 25/301 (8%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK-------SNNVDVA 160
           +    +KSCA L +  LG ++H     SG  +D     AL+N Y K       S  +D +
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 161 -------RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
                  RKVFD MP+K VV+WN+++ G  ++G   EA+GL   M   G  PDS T   V
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSV 179

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           L   A+  D+  G  +H F    G   +V + +SLI+MYA C     + ++FD +   + 
Sbjct: 180 LPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDA 239

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
           I W +M++G   +G   EA+ LF RM   G++P  VTF +++ AC +   +  G ++ A 
Sbjct: 240 ILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHA- 298

Query: 334 MRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
               Y +  G + +V     ++D++ + G ++ A +    +  + P    WTAM+    +
Sbjct: 299 ----YVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRI--QSPDIVSWTAMIMGHAL 352

Query: 390 H 390
           H
Sbjct: 353 H 353



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 166/327 (50%), Gaps = 5/327 (1%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           I   G  ++   ++H      G+     + + L+ +  +     Y+ ++F  +P  D+ L
Sbjct: 182 IFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAIL 241

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N+++   ++     ++L  +RRM+ S I P   TFS++I +C +L+ L LG+ +H +V 
Sbjct: 242 WNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVI 301

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
             G+D ++ + ++L++ Y K  NV +AR++FDR+    +V+W +MI G+  +G A+EA+ 
Sbjct: 302 RGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALV 361

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMY 252
           LF+ M    + P+  T + VL AC+  G +D G ++ +      G+  ++    +L +  
Sbjct: 362 LFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTL 421

Query: 253 ARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
            R G + +A   I  M  +     W+ ++    +H     A E+  ++    + P ++  
Sbjct: 422 GRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKI--FDLEPRSMGS 479

Query: 312 VAVLSAC-AHAGLVQEGHRVFASMRQE 337
             +LS   + +G   E   +  SMR++
Sbjct: 480 HIILSNTYSSSGRWNEAAHLRKSMRKK 506


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/581 (38%), Positives = 349/581 (60%), Gaps = 28/581 (4%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L  L+QVHA ++  G       L+ LL+        TYA  IF  IP+P  FL+NTLI  
Sbjct: 18  LNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFA-STYAFTIFNHIPNPTLFLYNTLI-- 74

Query: 81  NSKANFSTDSL-----LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF-- 133
            S     +D +     L+   +    + P+++TF ++ K+CA    L  G  +H HV   
Sbjct: 75  -SSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPPLHAHVLKF 133

Query: 134 -VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG------ 186
               YD    VQ +L+NFYAK   + V+R +FD++ +  +  WN+M++ Y Q+       
Sbjct: 134 LQPPYDP--FVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYS 191

Query: 187 -------FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
                   + EA+ LF  M+   + P+  T V +++AC+ LG +  G W H +++   L 
Sbjct: 192 TSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLK 251

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
           +N  + T+L++MY++CG ++ A ++FD +S+ +   + AMI G+ +HG+G +A+EL+  M
Sbjct: 252 LNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNM 311

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
           +   + P+  T V  + AC+H GLV+EG  +F SM+  +G+ P +EH+ C++DL GRAG 
Sbjct: 312 KLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGR 371

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L EA + ++D +  KP   +W ++LGA K+H N ++G    +HL+ +EPE  G+YV+LSN
Sbjct: 372 LKEAEERLQD-MPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNYVLLSN 430

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           +YA  GR + V+ VR +M   G+ K  G+S VE++   + F  GDK+HP + EIY  + E
Sbjct: 431 MYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIYSKIGE 490

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           +  R  E G+ P +   + ++EEE++E  L YHSE+LA+AF L+ +S  M IRI+KNLR+
Sbjct: 491 INRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSMPIRIIKNLRV 550

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCH+  K IS A  R+IIVRDR RFHHFK GSCSCLDYW
Sbjct: 551 CGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/573 (41%), Positives = 338/573 (58%), Gaps = 11/573 (1%)

Query: 15  LKAGPRLK-PL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           LK+  RL  PL   +Q+HA  +      +  +LT LLSL    G +  AQR+F  +P P 
Sbjct: 77  LKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPS 136

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
           +  +  LI     A    +++   R    + + P ++T   V+ +CA ++ L  G  V  
Sbjct: 137 TVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWR 196

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
                G    + V  A V+ Y K   +  AR+VFD+M  K  VAW +M+ GY  NG  +E
Sbjct: 197 AAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPRE 256

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ LF  M+  G+ PD       L+AC +LG +DLGR     +       N VL T+LI+
Sbjct: 257 ALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALID 316

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MYA+CG+  +A  +F  M + ++I W AMI G GM G+   A  L  +M   GV+ N+ T
Sbjct: 317 MYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNT 376

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           F+ +L +C H GL+Q+G R F +M + Y + P +EH+ CMVDL  RAGLL EA++ V D+
Sbjct: 377 FIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDM 436

Query: 371 IGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
               P PA   +  A+LG CK+H+N +L   V + L+ +EP N G+YVMLSNIY+  GR 
Sbjct: 437 ----PMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRW 492

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           +    +R  M  KG++K    S VE + K + F +GDKSHP +++IY+ LDEL    +  
Sbjct: 493 EDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTM 552

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           GY P +E  M ++E+EE+E++L +HSEKLA+AF L+ T PG TIR+ KNLR+C DCH+AI
Sbjct: 553 GYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAI 612

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           K +S  T+REIIVRD  RFH F+ GSCSC DYW
Sbjct: 613 KLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 345/578 (59%), Gaps = 36/578 (6%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           ++ S    L+SL   +G    A   F  +P  D   +N++I   S+  ++ ++L  + +M
Sbjct: 206 KNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKM 265

Query: 98  I-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           +   ++ P N+T ++++ +CA+L  LN+G+ +H ++  +  ++   V  AL++ YAKS  
Sbjct: 266 LNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGG 325

Query: 157 VDVAR---------------------------------KVFDRMPDKSVVAWNSMISGYE 183
           V++AR                                 ++F+++ D+ VVAW +MI GY 
Sbjct: 326 VEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYV 385

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG   +A+ LF LM + G  P+S T   +L+  + L  ++ G+ +H   +  G      
Sbjct: 386 QNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPS 445

Query: 244 LATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           +  +LI MYA+ GN++ A+ +FD+ + +  +++WT+MI     HG G EA+ LF RM + 
Sbjct: 446 VTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSV 505

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G++P+++T+V VLSAC H GLV++G + +  M + + + P + H+ CM+DL+GRAGLL E
Sbjct: 506 GMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQE 565

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           AY F++ +  E P    W ++L +CK+HKN DL    AE LL ++P N G Y+ L+N+Y+
Sbjct: 566 AYLFIESMPIE-PDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYS 624

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             G+ +     R +M  +G++K  G S + +  + + F + D  HP  +EIY+ + E+  
Sbjct: 625 ACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWE 684

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             ++ G++P++ES +H+LEEE +E  L+YHSEKLA+AFGL+ T     +RI+KNLR+C D
Sbjct: 685 EIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCND 744

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CHSAIKFIS    REIIVRD  RFHHFK GSCSC DYW
Sbjct: 745 CHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 139/504 (27%), Positives = 225/504 (44%), Gaps = 103/504 (20%)

Query: 3   NKQPHSPAYEAILKAGPRLK-PL--QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           N    S  +  IL+   R+K P   + VH  +I  G      ++  L++     G + +A
Sbjct: 5   NSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFA 64

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSK-ANFSTDSLLFYR----------------------- 95
             +F  +P   +F +NTLI   +K  NF     L Y                        
Sbjct: 65  HHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFD 124

Query: 96  -------RMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
                  +MI   + PS +T S V+ SCA    L++GR +H  V   G  S + V  +L+
Sbjct: 125 NAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLL 184

Query: 149 NFYAKSNNVDVARKVFDRMPDKSVVAW-------------------------------NS 177
           N YAK  +  +A+ VFDRM  K++  W                               NS
Sbjct: 185 NMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNS 244

Query: 178 MISGYEQNGFAKEAIGLFN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI--- 233
           MISGY Q G+  EA+ +F+ ++ +  + PD+ T   +L+ACA L  +++G+ +H +I   
Sbjct: 245 MISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRA 304

Query: 234 -------VGQGL-----------------------DVNVVLATSLINMYARCGNVSKARE 263
                  VG  L                       ++N++  TSL++ Y + GNV  ARE
Sbjct: 305 ETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPARE 364

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           IF+ + + +V+AWTAMI GY  +G   +A+ELF  M   G  PN+ T  A+LS  +   +
Sbjct: 365 IFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTI 424

Query: 324 VQEGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           ++ G ++ AS ++      P V +   ++ ++ + G +N A K V D+   K     WT+
Sbjct: 425 LEHGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVA-KRVFDLPNGKKEIVSWTS 481

Query: 383 MLGACKMHKNFDLGVEVAEHLLSV 406
           M+ A   H      + + E +LSV
Sbjct: 482 MIMALAQHGLGKEAINLFERMLSV 505



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 63/299 (21%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M V N   S+  F+ ++++   +     GR+VHC +   G    +++   L+ FYAK+ +
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGY-------------------------------EQN 185
           +  A  VFD MP KS  +WN++ISGY                                Q 
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQF 120

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G    AI +F  M    V P   T   VL++CA    +D+GR +H F+V  GL   V +A
Sbjct: 121 GLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 246 TSLINMYARCGNVSKAREIFDMMS-------------------------------ELNVI 274
           TSL+NMYA+CG+   A+ +FD M+                               + +++
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 275 AWTAMISGYGMHGYGTEAVELFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           +W +MISGY   GY  EA+ +F +M     ++P+N T  ++LSACA+   +  G ++ A
Sbjct: 241 SWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHA 299



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 127/301 (42%), Gaps = 51/301 (16%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+S    A+L     L  L+   Q+HA  I AG   + S+   L+++    G I  A+R
Sbjct: 406 EPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKR 465

Query: 62  IFFCIPSPDSFL--FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           + F +P+    +  + ++I+  ++     +++  + RM+   + P + T+  V+ +C H+
Sbjct: 466 V-FDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHV 524

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
            ++  GR  +  +      +++H     ++ YA                         MI
Sbjct: 525 GLVEQGRKYYNMM------TEVHEIEPTLSHYA------------------------CMI 554

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE--FIVGQG 237
             Y + G  +EA   +  +    + PD+     +LA+C    + DL +   E   ++  G
Sbjct: 555 DLYGRAGLLQEA---YLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPG 611

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV-----IAWTAMISGYGMHGYGTEA 292
              N     +L N+Y+ CG    A +   +M +  V     I+W  + +   +H +G E 
Sbjct: 612 ---NSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKN--EVHAFGVED 666

Query: 293 V 293
           V
Sbjct: 667 V 667


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/556 (38%), Positives = 343/556 (61%), Gaps = 2/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + +H + I A +G+  ++   LL +   +G +  A ++F  +       + ++I   ++ 
Sbjct: 271 RALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYARE 330

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             S  S+  +  M    ISP  +T + ++ +CA   +L  G+ VH ++  +   SDL V 
Sbjct: 331 GLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVS 390

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL++ YAK  ++  A  VF  M  K +V+WN+MI GY +N    EA+ LF  M+ +   
Sbjct: 391 NALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQ-YNSK 449

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+S T  C+L ACA L  ++ G+ +H  I+  G  ++  +A +L++MY +CG +  AR +
Sbjct: 450 PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLL 509

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FDM+ E ++++WT MI+GYGMHGYG+EA+  F+ MR  G+ P+ V+F+++L AC+H+GL+
Sbjct: 510 FDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLL 569

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG   F  MR    + P  EH+ C+VDL  RAG L++AYKF+K ++  +P   +W A+L
Sbjct: 570 DEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIK-MMPIEPDATIWGALL 628

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
             C+++ +  L  +VAEH+  +EPEN G+YV+L+NIYA A + + V+ +R  + ++GL+K
Sbjct: 629 CGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRK 688

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
           + G S +E+  K ++F  GD SHP  N+I   L +   R +E G+ P+   A+ + ++ E
Sbjct: 689 NPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTE 748

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E +L  HSEK+A+AFG++   PG T+R+ KNLR+C DCH   KF+S    R+II+RD  
Sbjct: 749 KEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSN 808

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHFK GSCSC  +W
Sbjct: 809 RFHHFKDGSCSCRGHW 824



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 185/338 (54%), Gaps = 10/338 (2%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           +  A+++F  +   D   +N++I        S   L  + +M++  I+    T  +V+  
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAG 260

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           C++  +L LGRA+H +   + +  +L +   L++ Y+KS N++ A +VF+ M ++SVV+W
Sbjct: 261 CSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 320

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
            SMI+GY + G +  ++ LF+ M   G++PD  T   +L ACA  G ++ G+ VH +I  
Sbjct: 321 TSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKE 380

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
             +  ++ ++ +L++MYA+CG++  A  +F  M   ++++W  MI GY  +    EA+ L
Sbjct: 381 NKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNL 440

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEHHV--CMVD 352
           F  M+ +  +PN++T   +L ACA    ++ G  +    +R  + L    + HV   +VD
Sbjct: 441 FVEMQ-YNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSL----DRHVANALVD 495

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           ++ + G L  A + + D+I EK   + WT M+    MH
Sbjct: 496 MYLKCGALGLA-RLLFDMIPEKDLVS-WTVMIAGYGMH 531



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 157/350 (44%), Gaps = 66/350 (18%)

Query: 95  RRMIVSNISPSN----YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNF 150
           R M + N SP       T+ +V++ CA L  +  GR +H  +  +  + D  + + LV  
Sbjct: 86  RAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFM 145

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNS--------------------------------- 177
           Y    ++   R++FD++ ++ V  WN                                  
Sbjct: 146 YVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESAR 205

Query: 178 ----------------MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
                           MISGY  NG +++ + LF  M   G+N D  T V V+A C+  G
Sbjct: 206 KLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTG 265

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            + LGR +H + +       + L   L++MY++ GN++ A ++F+ M E +V++WT+MI+
Sbjct: 266 MLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIA 325

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           GY   G    +V LFH M   G+ P+  T   +L ACA  GL++ G  V   ++ E  + 
Sbjct: 326 GYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIK-ENKMQ 384

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEKPAPAVWTAMLGA 386
             +     ++D++ + G + +A+       VKD++        W  M+G 
Sbjct: 385 SDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVS-------WNTMIGG 427



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 150/355 (42%), Gaps = 73/355 (20%)

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD---STTCVCVLAACAQLGDIDL 225
           D  +  +N  I  + + G  + A+ L N        PD    T C  VL  CA L  I  
Sbjct: 65  DCKITDYNIEICRFCELGNLRRAMELINQ----SPKPDLELRTYC-SVLQLCADLKSIQD 119

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           GR +H  I    ++V+ VL + L+ MY  CG++ + R IFD ++   V  W  +++GY  
Sbjct: 120 GRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAK 179

Query: 286 HGYGTEAVELFHRMRAHGVR---------------------------------------- 305
            G   E++ LF RMR  G+R                                        
Sbjct: 180 IGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLF 239

Query: 306 ---------PNNVTFVAVLSACAHAGLV-----QEGHRVFASMRQEYGLLPGVEHHVCMV 351
                     +  T V+V++ C++ G++       G+ + AS  +E  L      + C++
Sbjct: 240 EQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTL------NNCLL 293

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411
           D++ ++G LN A + V + +GE+   + WT+M+         D+ V +  H +  E  +P
Sbjct: 294 DMYSKSGNLNSAIQ-VFETMGERSVVS-WTSMIAGYAREGLSDMSVRLF-HEMEKEGISP 350

Query: 412 GHYVMLSNIYALA--GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
             + + + ++A A  G ++  + V N + +  ++  +  S   +D      SMGD
Sbjct: 351 DIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGD 405



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 84/189 (44%), Gaps = 15/189 (7%)

Query: 3   NKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           N +P+S     IL A   L  L   Q++H H++  G+   R +   L+ +    G +  A
Sbjct: 447 NSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLA 506

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           + +F  IP  D   +  +I       + ++++  +  M  S I P   +F +++ +C+H 
Sbjct: 507 RLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHS 566

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQ------AALVNFYAKSNNVDVARKVFDRMP-DKSV 172
            +L+ G       F +   ++  ++      A +V+  A++ N+  A K    MP +   
Sbjct: 567 GLLDEGWG-----FFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDA 621

Query: 173 VAWNSMISG 181
             W +++ G
Sbjct: 622 TIWGALLCG 630


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/556 (40%), Positives = 344/556 (61%), Gaps = 3/556 (0%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           Q+HA+ +  G      +   L+ +      + Y   IF  +P  D   + T+I  +++  
Sbjct: 440 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG 499

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
             + +L  +R + +  I       S+++ +C+ L +++  + +H ++   G  SDL +Q 
Sbjct: 500 SHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQN 558

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
            +V+ Y +  NVD A ++F+ +  K VV+W SMIS Y  NG A EA+ LF+LM++ GV P
Sbjct: 559 GIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEP 618

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           DS + V +L+A A L  +  G+ +H F++ +G  +   LA++L++MYARCG + K+R +F
Sbjct: 619 DSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVF 678

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           + +   +++ WT+MI+ YGMHG G  A++LF RM    + P+++ FVAVL AC+H+GL+ 
Sbjct: 679 NFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMN 738

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           EG R   SM+ EY L P  EH+VC+VDL GRA  L EAY+FVK +  E P   VW A+LG
Sbjct: 739 EGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVE-PTAEVWCALLG 797

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           AC++H N +LG   A+ LL ++PENPG+YV++SN+YA   R   VE VR  M   GLKK+
Sbjct: 798 ACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKN 857

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR-CREAGYVPESESAMHELEEEE 504
            G S +EV  K + F   DKSHP + EIY  L ++  +  +E GYV +++  +H  +EEE
Sbjct: 858 PGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEE 917

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +   L  HSE+LA+A+G++ T  G ++RI KNLR+C DCH+  K IS    RE+++RD  
Sbjct: 918 KVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDAN 977

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHFK G CSC D W
Sbjct: 978 RFHHFKGGVCSCGDVW 993



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 199/384 (51%), Gaps = 12/384 (3%)

Query: 10  AYEAILKAGPRLKPL---QQVHAHLIVA-GYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           AY ++L+     K L   QQVHAH+I +     S  + T+L+ +    G +  A+++F  
Sbjct: 116 AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 175

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           +P    F +N +I           SL  YR M VS I     TF  ++K+C  L     G
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCG 235

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK-SVVAWNSMISGYEQ 184
             VH      GY S + V  ++V  Y K N+++ AR++FDRMP+K  VV+WNSMIS Y  
Sbjct: 236 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 295

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           NG + EA+ LF  M+   + P++ T V  L AC     I  G ++H  ++     +NV +
Sbjct: 296 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFV 355

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
           A +LI MYAR G + +A  IF  M + + I+W +M+SG+  +G   EA++ +H MR  G 
Sbjct: 356 ANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ 415

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
           +P+ V  +++++A A +G    G ++ A   +  GL   ++    +VD++ +      + 
Sbjct: 416 KPDLVAVISIIAASARSGNTLNGMQIHAYAMKN-GLDSDLQVGNSLVDMYAKFC----SM 470

Query: 365 KFVKDVIGEKPAPAV--WTAMLGA 386
           K++  +  + P   V  WT ++  
Sbjct: 471 KYMDCIFDKMPDKDVVSWTTIIAG 494



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 215/420 (51%), Gaps = 36/420 (8%)

Query: 10  AYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
            +  ILKA   LK  +   +VH   I  GY     +   ++ +      +  A+++F  +
Sbjct: 218 TFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRM 277

Query: 67  PSPDSFL-FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           P  +  + +N++I   S    S ++L  +  M  ++++P+ YTF A +++C   S +  G
Sbjct: 278 PEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG 337

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
             +H  V  S Y  ++ V  AL+  YA+   +  A  +F  M D   ++WNSM+SG+ QN
Sbjct: 338 MFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQN 397

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G   EA+  ++ MRD G  PD    + ++AA A+ G+   G  +H + +  GLD ++ + 
Sbjct: 398 GLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVG 457

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
            SL++MYA+  ++     IFD M + +V++WT +I+G+  +G  + A+ELF  ++  G+ 
Sbjct: 458 NSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGID 517

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQ--EYGLLPGVEHHVC---MVDLFGRAGLL 360
            + +   ++L AC+       G ++ +S+++   Y +  G+   V    +VD++G  G +
Sbjct: 518 LDVMMISSILLACS-------GLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNV 570

Query: 361 NEAYKF-----VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE--HLLS---VEPEN 410
           + A +       KDV+        WT+M+ +C +H    L  E  E  HL+    VEP++
Sbjct: 571 DYAARMFELIEFKDVVS-------WTSMI-SCYVHNG--LANEALELFHLMKETGVEPDS 620



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 147/273 (53%), Gaps = 9/273 (3%)

Query: 98  IVSNISPSNYT----FSAVIKSCAHLSILNLGRAVHCHVFVS-GYDSDLHVQAALVNFYA 152
           + +N SPS ++    +S+V++ C     L+ G+ VH H+  S    + + +   LV  Y 
Sbjct: 102 LFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYG 161

Query: 153 KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVC 212
           K   +  A K+FD MP K++  WN+MI  Y  NG    ++ L+  MR  G+  D+ T  C
Sbjct: 162 KCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPC 221

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL- 271
           +L AC  L D   G  VH   + +G    V +A S++ MY +C +++ AR++FD M E  
Sbjct: 222 ILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKE 281

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           +V++W +MIS Y  +G   EA+ LF  M+   + PN  TFVA L AC  +  +++G  + 
Sbjct: 282 DVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIH 341

Query: 332 AS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           A+ ++  Y +   V +   ++ ++ R G + EA
Sbjct: 342 ATVLKSSYYINVFVAN--ALIAMYARFGKMGEA 372


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/562 (38%), Positives = 340/562 (60%), Gaps = 4/562 (0%)

Query: 19  PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           P +   +++HA +  +   R   +  +L++     G+   A ++F  +P  D   +N+LI
Sbjct: 53  PSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLI 112

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
              S+         FY      ++ P+  T  ++I +C+    L+ G+ +H      G  
Sbjct: 113 SGFSRC-LHMSLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKYIHGFGIKVGGT 169

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
            ++ V  +L+N Y KS ++  A ++F+ +PD + V+WNS+I+    NG A+E I  FN M
Sbjct: 170 LEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKM 229

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
           R  G+  D  T + +L AC  LG   L   +H  +   G    + +AT+L++ YA+ G +
Sbjct: 230 RRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRL 289

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
           S +  +F  +   + +AWTAM++GY  HG G EA++LF  M   G+ P++VTF  +LSAC
Sbjct: 290 SASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSAC 349

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           +H+GLV EG   F  M + YG+ P V+H+ CMVDL GR GLLN+AY+ ++++  E P   
Sbjct: 350 SHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPME-PNAG 408

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
           VW A+LGAC++H N +LG EVAEHL+++EP +P +Y+MLSN+Y+ +        VR ++ 
Sbjct: 409 VWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLK 468

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
           ++GLK+  GYS++E   KN+ F +GD+SHP T +IY  L+EL+G+ R+AGY  ++E  + 
Sbjct: 469 ERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQ 528

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
           ++EEE +E  +  HSEKLA+AFGL+ +  G  + I KNLR+C DCHS  K IS+   R I
Sbjct: 529 DVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTI 588

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           I+RD  RFHHF  G CSC DYW
Sbjct: 589 IIRDPKRFHHFSDGFCSCADYW 610


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/556 (38%), Positives = 340/556 (61%), Gaps = 3/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH  ++ +G+G +  + + L+ +    G +  A+ +   +   D   +N+L++   + 
Sbjct: 285 EQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRH 344

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++L  ++ M   N+   +YTF +V+  C   SI    ++VH  +  +G+++   V 
Sbjct: 345 GLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINP--KSVHGLIIKTGFENYKLVS 402

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            ALV+ YAK+ ++D A  VF++M +K V++W S+++GY QN   +E++ +F  MR  GVN
Sbjct: 403 NALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVN 462

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD      +L+ACA+L  ++ G+ VH   +  GL  +  +  SL+ MYA+CG +  A  I
Sbjct: 463 PDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAI 522

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  M   +VI WTA+I GY  +G G  +++ +  M + G RP+ +TF+ +L AC+HAGLV
Sbjct: 523 FVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLV 582

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG + F  M + YG+ PG EH+ CM+DLFGR+G L+EA + + D +  KP   VW ++L
Sbjct: 583 DEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLL-DQMDVKPDATVWKSLL 641

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            AC++H+N +L    A +L  +EP N   YVMLSN+Y+ + + + V  +R +M  KG+ K
Sbjct: 642 SACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVK 701

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S +E++ +   F   D+ HP   EIY  +DE++ R +EAGYVP+   ++H++++E 
Sbjct: 702 EPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEG 761

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E  L YHSEKLA+AFGL+   P   IRI KNLR+C DCHSA+K+IS    R II+RD  
Sbjct: 762 KEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSN 821

Query: 565 RFHHFKRGSCSCLDYW 580
            FHHF+ G CSC DYW
Sbjct: 822 CFHHFREGECSCGDYW 837



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/462 (23%), Positives = 208/462 (45%), Gaps = 69/462 (14%)

Query: 6   PHSPA-YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           PH+P  + A L++            H   A    S     +LL+ +  +G +  A+++F 
Sbjct: 41  PHNPCKFMAFLRS-----------IHTTTAASYESIYQTNQLLNQLSKSGQVNDARKLFD 89

Query: 65  CIPSPDSFLFNTLIIRN-------------------------------SKANFSTDSLLF 93
            +P  D + +NT+I                                   K     ++   
Sbjct: 90  KMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDL 149

Query: 94  YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153
           +R M +     S +T  +V++ C+ L ++  G  +H  V  +G++ ++ V   LV+ YAK
Sbjct: 150 FRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAK 209

Query: 154 SNNVDVARKVFD--RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
              V  A  +F       K+ V W +M++GY QNG   +A+  F  M   GV  +  T  
Sbjct: 210 CKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFP 269

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
            +L AC+ +     G  VH FIV  G   NV + ++L++MYA+CG++  A+ + + M + 
Sbjct: 270 TILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDD 329

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC---------AHAG 322
           +V++W +++ G+  HG   EA+ LF  M    ++ ++ TF +VL+ C          H  
Sbjct: 330 DVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGL 389

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           +++ G        + Y L+        +VD++ + G ++ AY   + ++ EK   + WT+
Sbjct: 390 IIKTGF-------ENYKLVSNA-----LVDMYAKTGDMDCAYTVFEKML-EKDVIS-WTS 435

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
           ++     + + +  +++    + V   NP  +++ S + A A
Sbjct: 436 LVTGYAQNNSHEESLKIFCD-MRVTGVNPDQFIVASILSACA 476



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 144/313 (46%), Gaps = 40/313 (12%)

Query: 107 YTFSAVIKSCAH--LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           + FS+ + S  H     +   R++H     S Y+S ++    L+N  +KS  V+ ARK+F
Sbjct: 31  HKFSSKVLSFPHNPCKFMAFLRSIHTTTAAS-YES-IYQTNQLLNQLSKSGQVNDARKLF 88

Query: 165 DRMPDKSVVAWNSMIS-------------------------------GYEQNGFAKEAIG 193
           D+MP K   +WN+MIS                               GY + G   EA  
Sbjct: 89  DKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFD 148

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           LF  MR  G      T   VL  C+ LG I  G  +H F+V  G + NV + T L++MYA
Sbjct: 149 LFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYA 208

Query: 254 RCGNVSKAREIFDMM--SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           +C  VS+A  +F  +     N + WTAM++GY  +G G +AVE F  M A GV  N  TF
Sbjct: 209 KCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTF 268

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
             +L+AC+       G +V   + +  G    V     +VD++ + G L  A   ++ + 
Sbjct: 269 PTILTACSSVLARCFGEQVHGFIVKS-GFGSNVYVQSALVDMYAKCGDLKNAKNMLETM- 326

Query: 372 GEKPAPAVWTAML 384
            E      W +++
Sbjct: 327 -EDDDVVSWNSLM 338


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 346/578 (59%), Gaps = 4/578 (0%)

Query: 6    PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
            P+   Y +ILK   RL  L+   Q+H+ +I   +  +  + + L+ +    G +  A  I
Sbjct: 448  PNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDI 507

Query: 63   FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
                   D   + T+I   ++ NF   +L  +R+M+   I       +  + +CA L  L
Sbjct: 508  LIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQAL 567

Query: 123  NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
              G+ +H    VSG+ SDL  Q ALV  Y++   ++ +   F++      +AWN+++SG+
Sbjct: 568  KEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGF 627

Query: 183  EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            +Q+G  +EA+ +F  M   G++ ++ T    + A ++  ++  G+ VH  I   G D   
Sbjct: 628  QQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSET 687

Query: 243  VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
             +  +LI+MYA+CG++S A + F  +S  N ++W A+I+ Y  HG+G+EA++ F +M   
Sbjct: 688  EVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHS 747

Query: 303  GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
             VRPN+VT V VLSAC+H GLV +G   F SM  EYGL P  EH+VC+VD+  RAGLL+ 
Sbjct: 748  NVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSR 807

Query: 363  AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
            A +F+++ +  KP   VW  +L AC +HKN ++G   A HLL +EPE+   YV+LSN+YA
Sbjct: 808  AKEFIQE-MPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 866

Query: 423  LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            ++ + D  ++ R  M +KG+KK  G S +EV    + F +GD++HP  +EI++Y  +L  
Sbjct: 867  VSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTK 926

Query: 483  RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
            R  E GYV +  S ++EL+ E+++  +  HSEKLA++FGL+     + I ++KNLR+C D
Sbjct: 927  RASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCND 986

Query: 543  CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            CH+ IKF+S  +NREIIVRD  RFHHF+ G+CSC DYW
Sbjct: 987  CHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 177/366 (48%), Gaps = 3/366 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           QQ+HA+    G+  +  +   LL+L      I  A   F      +  L+N +++     
Sbjct: 369 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLL 428

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           +   +S   +R+M +  I P+ YT+ +++K+C  L  L LG  +H  +  + +  + +V 
Sbjct: 429 DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVC 488

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           + L++ YAK   +D A  +  R   K VV+W +MI+GY Q  F  +A+  F  M D G+ 
Sbjct: 489 SVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIR 548

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            D       ++ACA L  +  G+ +H      G   ++    +L+ +Y+RCG + ++   
Sbjct: 549 SDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLA 608

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+     + IAW A++SG+   G   EA+ +F RM   G+  NN TF + + A +    +
Sbjct: 609 FEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANM 668

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           ++G +V A + +  G     E    ++ ++ + G +++A K   +V  +      W A++
Sbjct: 669 KQGKQVHAVITKT-GYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS--WNAII 725

Query: 385 GACKMH 390
            A   H
Sbjct: 726 NAYSKH 731



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 192/399 (48%), Gaps = 12/399 (3%)

Query: 2   KNKQPHSPAYEAILKA----GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           +N  P+   +  +L+A          ++Q+HA ++  G   S  +   L+ L    GF+ 
Sbjct: 140 ENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVD 199

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A+R+F  +   D   +  +I   SK     +++  +  M V  I P+ Y FS+V+ +C 
Sbjct: 200 LARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACK 259

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            +  L +G  +H  V   G+ SD +V  ALV+ Y    N+  A  +F  M  +  V +N+
Sbjct: 260 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNT 319

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +I+G  Q G+ ++A+ LF  M   G+ PDS T   ++ AC+  G +  G+ +H +    G
Sbjct: 320 LINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG 379

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
              N  +  +L+N+YA+C ++  A + F      NV+ W  M+  YG+      +  +F 
Sbjct: 380 FASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR 439

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFG 355
           +M+   + PN  T+ ++L  C   G ++ G ++ + + +    L     +VC  ++D++ 
Sbjct: 440 QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA---YVCSVLIDMYA 496

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
           + G L+ A+  +    G+      WT M+     + NFD
Sbjct: 497 KLGKLDTAWDILIRFAGKDVVS--WTTMIAGYTQY-NFD 532



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 196/398 (49%), Gaps = 8/398 (2%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P   A+ ++L A  +++ L+   Q+H  ++  G+     +   L+SL    G +  A+ I
Sbjct: 246 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHI 305

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   D+  +NTLI   S+  +   ++  ++RM +  + P + T ++++ +C+    L
Sbjct: 306 FSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTL 365

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+ +H +    G+ S+  ++ AL+N YAK  +++ A   F     ++VV WN M+  Y
Sbjct: 366 FRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 425

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
                 + +  +F  M+   + P+  T   +L  C +LGD++LG  +H  I+     +N 
Sbjct: 426 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 485

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            + + LI+MYA+ G +  A +I    +  +V++WT MI+GY  + +  +A+  F +M   
Sbjct: 486 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 545

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+R + V     +SACA    ++EG ++ A      G    +     +V L+ R G + E
Sbjct: 546 GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPFQNALVTLYSRCGKIEE 604

Query: 363 AY-KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           +Y  F +   G+  A   W A++   +   N +  + V
Sbjct: 605 SYLAFEQTEAGDNIA---WNALVSGFQQSGNNEEALRV 639



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/492 (24%), Positives = 228/492 (46%), Gaps = 37/492 (7%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           N Q      E  LK    L   +++H+ ++  G   +  +  KL       G +  A ++
Sbjct: 43  NHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKV 102

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI- 121
           F  +P    F +N +I   +  N   +    + RM+  N++P+  TFS V+++C   S+ 
Sbjct: 103 FDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVA 162

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
            ++   +H  +   G      V   L++ Y+++  VD+AR+VFD +  K   +W +MISG
Sbjct: 163 FDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISG 222

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             +N    EAI LF  M   G+ P       VL+AC ++  +++G  +H  ++  G   +
Sbjct: 223 LSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSD 282

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +  +L+++Y   GN+  A  IF  MS+ + + +  +I+G    GYG +A+ELF RM  
Sbjct: 283 TYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHL 342

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRV--------FASMRQ----------------- 336
            G+ P++ T  +++ AC+  G +  G ++        FAS  +                 
Sbjct: 343 DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIET 402

Query: 337 --EYGLLPGVEHHVCMVDLFGRAGLLNE---AYKFVKDVIGEKPAPAVWT--AMLGACKM 389
             +Y L   VE+ V    +    GLL++   +++  + +  E+  P  +T  ++L  C  
Sbjct: 403 ALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR 462

Query: 390 HKNFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGY 448
             + +LG ++   ++    + N     +L ++YA  G++D      +I+I+   K  V +
Sbjct: 463 LGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLD---TAWDILIRFAGKDVVSW 519

Query: 449 STVEVDQKNYLF 460
           +T+      Y F
Sbjct: 520 TTMIAGYTQYNF 531



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 4/232 (1%)

Query: 102 ISPSNYTFSAVIKSCAHLS-ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
           I P++ T   +++ C   +  L+ GR +H  +   G DS+  +   L +FY    ++  A
Sbjct: 40  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 99

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
            KVFD MP++++  WN MI          E  GLF  M    V P+  T   VL AC + 
Sbjct: 100 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-RG 158

Query: 221 GDI--DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
           G +  D+   +H  I+ QGL  + V+   LI++Y+R G V  AR +FD +   +  +W A
Sbjct: 159 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 218

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
           MISG   +    EA+ LF  M   G+ P    F +VLSAC     ++ G ++
Sbjct: 219 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL 270



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 94/237 (39%), Gaps = 44/237 (18%)

Query: 202 GVNPDSTTCVCVLAACAQL-GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
           G+ P+  T   +L  C +  G +D GR +H  I+  GLD N  L+  L + Y   G++  
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC-- 318
           A ++FD M E  +  W  MI          E   LF RM +  V PN  TF  VL AC  
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 158

Query: 319 ----------AHA------------------------GLVQEGHRVFASMRQEYGLLPGV 344
                      HA                        G V    RVF  +R     L   
Sbjct: 159 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLR-----LKDH 213

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKD--VIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
              V M+    +     EA +   D  V+G  P P  ++++L ACK  ++ ++G ++
Sbjct: 214 SSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL 270


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 346/578 (59%), Gaps = 4/578 (0%)

Query: 6    PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
            P+   Y +ILK   RL  L+   Q+H+ +I   +  +  + + L+ +    G +  A  I
Sbjct: 488  PNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDI 547

Query: 63   FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
                   D   + T+I   ++ NF   +L  +R+M+   I       +  + +CA L  L
Sbjct: 548  LIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQAL 607

Query: 123  NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
              G+ +H    VSG+ SDL  Q ALV  Y++   ++ +   F++      +AWN+++SG+
Sbjct: 608  KEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGF 667

Query: 183  EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            +Q+G  +EA+ +F  M   G++ ++ T    + A ++  ++  G+ VH  I   G D   
Sbjct: 668  QQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSET 727

Query: 243  VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
             +  +LI+MYA+CG++S A + F  +S  N ++W A+I+ Y  HG+G+EA++ F +M   
Sbjct: 728  EVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHS 787

Query: 303  GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
             VRPN+VT V VLSAC+H GLV +G   F SM  EYGL P  EH+VC+VD+  RAGLL+ 
Sbjct: 788  NVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSR 847

Query: 363  AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
            A +F+++ +  KP   VW  +L AC +HKN ++G   A HLL +EPE+   YV+LSN+YA
Sbjct: 848  AKEFIQE-MPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 906

Query: 423  LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            ++ + D  ++ R  M +KG+KK  G S +EV    + F +GD++HP  +EI++Y  +L  
Sbjct: 907  VSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTK 966

Query: 483  RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
            R  E GYV +  S ++EL+ E+++  +  HSEKLA++FGL+     + I ++KNLR+C D
Sbjct: 967  RASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCND 1026

Query: 543  CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            CH+ IKF+S  +NREIIVRD  RFHHF+ G+CSC DYW
Sbjct: 1027 CHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 177/366 (48%), Gaps = 3/366 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           QQ+HA+    G+  +  +   LL+L      I  A   F      +  L+N +++     
Sbjct: 409 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLL 468

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           +   +S   +R+M +  I P+ YT+ +++K+C  L  L LG  +H  +  + +  + +V 
Sbjct: 469 DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVC 528

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           + L++ YAK   +D A  +  R   K VV+W +MI+GY Q  F  +A+  F  M D G+ 
Sbjct: 529 SVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIR 588

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            D       ++ACA L  +  G+ +H      G   ++    +L+ +Y+RCG + ++   
Sbjct: 589 SDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLA 648

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+     + IAW A++SG+   G   EA+ +F RM   G+  NN TF + + A +    +
Sbjct: 649 FEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANM 708

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           ++G +V A + +  G     E    ++ ++ + G +++A K   +V  +      W A++
Sbjct: 709 KQGKQVHAVITKT-GYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS--WNAII 765

Query: 385 GACKMH 390
            A   H
Sbjct: 766 NAYSKH 771



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 192/399 (48%), Gaps = 12/399 (3%)

Query: 2   KNKQPHSPAYEAILKA----GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           +N  P+   +  +L+A          ++Q+HA ++  G   S  +   L+ L    GF+ 
Sbjct: 180 ENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVD 239

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A+R+F  +   D   +  +I   SK     +++  +  M V  I P+ Y FS+V+ +C 
Sbjct: 240 LARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACK 299

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            +  L +G  +H  V   G+ SD +V  ALV+ Y    N+  A  +F  M  +  V +N+
Sbjct: 300 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNT 359

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +I+G  Q G+ ++A+ LF  M   G+ PDS T   ++ AC+  G +  G+ +H +    G
Sbjct: 360 LINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG 419

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
              N  +  +L+N+YA+C ++  A + F      NV+ W  M+  YG+      +  +F 
Sbjct: 420 FASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR 479

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFG 355
           +M+   + PN  T+ ++L  C   G ++ G ++ + + +    L     +VC  ++D++ 
Sbjct: 480 QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA---YVCSVLIDMYA 536

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
           + G L+ A+  +    G+      WT M+     + NFD
Sbjct: 537 KLGKLDTAWDILIRFAGKDVVS--WTTMIAGYTQY-NFD 572



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 196/398 (49%), Gaps = 8/398 (2%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P   A+ ++L A  +++ L+   Q+H  ++  G+     +   L+SL    G +  A+ I
Sbjct: 286 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHI 345

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   D+  +NTLI   S+  +   ++  ++RM +  + P + T ++++ +C+    L
Sbjct: 346 FSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTL 405

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+ +H +    G+ S+  ++ AL+N YAK  +++ A   F     ++VV WN M+  Y
Sbjct: 406 FRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 465

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
                 + +  +F  M+   + P+  T   +L  C +LGD++LG  +H  I+     +N 
Sbjct: 466 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 525

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            + + LI+MYA+ G +  A +I    +  +V++WT MI+GY  + +  +A+  F +M   
Sbjct: 526 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 585

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+R + V     +SACA    ++EG ++ A      G    +     +V L+ R G + E
Sbjct: 586 GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPFQNALVTLYSRCGKIEE 644

Query: 363 AY-KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           +Y  F +   G+  A   W A++   +   N +  + V
Sbjct: 645 SYLAFEQTEAGDNIA---WNALVSGFQQSGNNEEALRV 679



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/492 (24%), Positives = 228/492 (46%), Gaps = 37/492 (7%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           N Q      E  LK    L   +++H+ ++  G   +  +  KL       G +  A ++
Sbjct: 83  NHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKV 142

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI- 121
           F  +P    F +N +I   +  N   +    + RM+  N++P+  TFS V+++C   S+ 
Sbjct: 143 FDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVA 202

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
            ++   +H  +   G      V   L++ Y+++  VD+AR+VFD +  K   +W +MISG
Sbjct: 203 FDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISG 262

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             +N    EAI LF  M   G+ P       VL+AC ++  +++G  +H  ++  G   +
Sbjct: 263 LSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSD 322

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +  +L+++Y   GN+  A  IF  MS+ + + +  +I+G    GYG +A+ELF RM  
Sbjct: 323 TYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHL 382

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRV--------FASMRQ----------------- 336
            G+ P++ T  +++ AC+  G +  G ++        FAS  +                 
Sbjct: 383 DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIET 442

Query: 337 --EYGLLPGVEHHVCMVDLFGRAGLLNE---AYKFVKDVIGEKPAPAVWT--AMLGACKM 389
             +Y L   VE+ V    +    GLL++   +++  + +  E+  P  +T  ++L  C  
Sbjct: 443 ALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR 502

Query: 390 HKNFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGY 448
             + +LG ++   ++    + N     +L ++YA  G++D      +I+I+   K  V +
Sbjct: 503 LGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLD---TAWDILIRFAGKDVVSW 559

Query: 449 STVEVDQKNYLF 460
           +T+      Y F
Sbjct: 560 TTMIAGYTQYNF 571



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 4/232 (1%)

Query: 102 ISPSNYTFSAVIKSCAHLS-ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
           I P++ T   +++ C   +  L+ GR +H  +   G DS+  +   L +FY    ++  A
Sbjct: 80  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
            KVFD MP++++  WN MI          E  GLF  M    V P+  T   VL AC + 
Sbjct: 140 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-RG 198

Query: 221 GDI--DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
           G +  D+   +H  I+ QGL  + V+   LI++Y+R G V  AR +FD +   +  +W A
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 258

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
           MISG   +    EA+ LF  M   G+ P    F +VLSAC     ++ G ++
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL 310



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 93/237 (39%), Gaps = 44/237 (18%)

Query: 202 GVNPDSTTCVCVLAACAQL-GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
           G+ P+  T   +L  C +  G +D GR +H  I+  GLD N  L+  L + Y   G++  
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC-- 318
           A ++FD M E  +  W  MI          E   LF RM +  V PN  TF  VL AC  
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198

Query: 319 ----------------------------------AHAGLVQEGHRVFASMRQEYGLLPGV 344
                                             +  G V    RVF  +R     L   
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLR-----LKDH 253

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKD--VIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
              V M+    +     EA +   D  V+G  P P  ++++L ACK  ++ ++G ++
Sbjct: 254 SSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL 310


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/556 (40%), Positives = 335/556 (60%), Gaps = 1/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H+ L+         +   L+ +      +  A+  F  +P  D   +N +I   S+ 
Sbjct: 352 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 411

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++L  +  M    I  +  T S ++KS A L ++++ R VH     SG+ SD++V 
Sbjct: 412 WEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVV 471

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            +L++ Y K ++V+ A ++F+      +V++ SMI+ Y Q G  +EA+ LF  M+D  + 
Sbjct: 472 NSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK 531

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD   C  +L ACA L   + G+ +H  I+  G  +++    SL+NMYA+CG++  A   
Sbjct: 532 PDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRA 591

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  ++E  +++W+AMI G   HG+G +A++LF++M   GV PN++T V+VL AC HAGLV
Sbjct: 592 FSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLV 651

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            E    F SM + +G  P  EH+ CM+DL GRAG +NEA + V  +  E  A +VW A+L
Sbjct: 652 TEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANA-SVWGALL 710

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GA ++HK+ +LG   AE L  +EPE  G +V+L+NIYA AG+ + V  VR +M    +KK
Sbjct: 711 GAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKK 770

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S +EV  K Y F +GD+SH  + EIY  LDEL     +AGYVP  E  +H++E+ E
Sbjct: 771 EPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSE 830

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E  L +HSEKLA+AFGL+ T  G  IR+ KNLR+CVDCH+A K+I    +REIIVRD  
Sbjct: 831 KELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDIN 890

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHFK GSCSC DYW
Sbjct: 891 RFHHFKDGSCSCGDYW 906



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 168/301 (55%), Gaps = 3/301 (0%)

Query: 3   NKQPHSPAYEAILK---AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           N  P S +Y  +L        L+P  Q+HAH+  +G     S+   L++L        YA
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYA 110

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           +++      PD   ++ LI   ++      +L+ +  M +  +  + +TFS+V+K+C+ +
Sbjct: 111 RKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             L +G+ VH  V VSG++ D+ V   LV  YAK +    ++++FD +P+++VV+WN++ 
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALF 230

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           S Y Q  F  EA+GLF  M   G+ P+  +   ++ AC  L D   G+ +H +++  G D
Sbjct: 231 SCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYD 290

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            +   A +L++MYA+ G+++ A  +F+ + + ++++W A+I+G  +H +  +A+EL  +M
Sbjct: 291 WDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350

Query: 300 R 300
           +
Sbjct: 351 K 351



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 73/141 (51%)

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           +   + NL+      P S +   +L+ C     +  G  +H  I   GL  +  +   LI
Sbjct: 39  QTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLI 98

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           N+Y++C     AR++ D  SE ++++W+A+ISGY  +G G  A+  FH M   GV+ N  
Sbjct: 99  NLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEF 158

Query: 310 TFVAVLSACAHAGLVQEGHRV 330
           TF +VL AC+    ++ G +V
Sbjct: 159 TFSSVLKACSIVKDLRIGKQV 179


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/611 (36%), Positives = 354/611 (57%), Gaps = 36/611 (5%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLV--CDA------ 53
           +P +  Y  ++++  + + LQQ   VH H+ ++G+     +L +LL +   CD+      
Sbjct: 67  KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQK 126

Query: 54  -----------------------GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDS 90
                                  G +  A+ +F  +P  D+F +  +I    + +   ++
Sbjct: 127 LFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEA 186

Query: 91  LLFYRRMIVSNISPSN-YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
           L  +R M  S+ S SN +T S+ + + A +  L +G+ +H ++  +G DSD  V +AL +
Sbjct: 187 LELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSD 246

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            Y K  +++ AR +FD+M D+ +V W +MI  Y Q+G  KE   LF  +   G+ P+  T
Sbjct: 247 MYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFT 306

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
              VL ACA     +LG+ VH ++   G D     A++L++MY++CGN+  A  +F    
Sbjct: 307 FSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETP 366

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
           + ++ +WT++I+GY  +G   EA+  F  +   G +P+++TFV VLSACAHAGLV +G  
Sbjct: 367 QPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLD 426

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
            F S++++YGL    +H+ C++DL  R+G  +EA   +   +  KP   +W ++LG C++
Sbjct: 427 YFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISK-MSMKPDKFLWASLLGGCRI 485

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           H N  L    AE L  +EPENP  YV L+NIYA AG    V  +R  M  +G+ K  G S
Sbjct: 486 HGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLS 545

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
            + + +  ++F +GD SHP + EI ++L +L  R +E G+VP++   +H++E+E++E +L
Sbjct: 546 WIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNL 605

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
            YHSEKLA+AFG++ T  G  I++ KNLR CVDCH+AIKFIS  TNR+IIVRD  RFH F
Sbjct: 606 SYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFF 665

Query: 570 KRGSCSCLDYW 580
           + G CSC DYW
Sbjct: 666 EDGHCSCRDYW 676


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/601 (39%), Positives = 360/601 (59%), Gaps = 46/601 (7%)

Query: 24  LQQVHAHLIVAG---YGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+Q+HAH I  G   +  + + L K L+L      I YA++ F  I  P+ F +NT+I  
Sbjct: 31  LKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQRE-IKYARKFFSQIHHPNCFSWNTIIRA 89

Query: 81  NSKANF-------STDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
            + ++        S ++LL++  M+    + P+ +TF  V+K+CA L+ +  G+ +H  V
Sbjct: 90  LADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFV 149

Query: 133 FVSGYDSDLHVQAALVNFYA--------------------------------KSNNVDVA 160
              G  SD  V++ LV  Y                                 +  ++  +
Sbjct: 150 VKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRAS 209

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
           R++FD MP+KSVV+WN MISG  QNG  KEAI +F+ M+   V P+  T V VL A ++L
Sbjct: 210 RELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRL 269

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD-MMSELNVIAWTAM 279
           G I+LG+WVH F     ++++ VL ++LI+MY++CG++ KA ++F+ + ++ N I W+A+
Sbjct: 270 GAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAI 329

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           I G  MHG   +A++ F RM+  GV P++V ++ VLSAC+HAGLV+EG  ++  M    G
Sbjct: 330 IGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVG 389

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           LLP +EH+ CMVDL GRAG L EA + + + +  KP   +  A+LGACKMH N ++G  +
Sbjct: 390 LLPRIEHYGCMVDLLGRAGCLEEAEQLILN-MPVKPDDVILKALLGACKMHGNIEMGERI 448

Query: 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYL 459
           A+ L+   P + G YV LSN++A  G  + V  VR  M +  ++K  G S +E+D   + 
Sbjct: 449 AKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHE 508

Query: 460 FSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALA 519
           F + D SHP    I+  L+E+  R R  GY P +   +  ++E+E++ +L YHSEK+A+A
Sbjct: 509 FLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIA 568

Query: 520 FGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           FGL+ T P   ++IVKNLR+C DCHS+IK +S   NR+IIVRDR RFHHF+ GSCSC+DY
Sbjct: 569 FGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDY 628

Query: 580 W 580
           W
Sbjct: 629 W 629


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/583 (37%), Positives = 356/583 (61%), Gaps = 9/583 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    Y  +LK    L  L+Q   VH HL+ + +     +   +L +    G +  A++
Sbjct: 88  EPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQ 147

Query: 62  IFFCIPSPDSFLFNTLIIRNSK---ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           +F  +   D   + ++I   S+   A+ +T +L+ +  M+   + P+ +  S+++K C  
Sbjct: 148 VFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGF 207

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L     G+ +H   +  G+  ++ V ++LV+ YA+   +  +R VFD +  K+ V+WN++
Sbjct: 208 LGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNAL 267

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           ISG+ + G  +EA+GLF  M+  G      T   +L + +  G ++ G+W+H  ++  G 
Sbjct: 268 ISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGK 327

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
            +   +  +L++MYA+ GN+  A+++FD + +++V++  +M+ GY  HG G EAVELF  
Sbjct: 328 KLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEE 387

Query: 299 MRAH-GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
           M     + PN++TF++VL+AC+HAGL+ EG   F  M++ YGL P + H+  +VDLFGRA
Sbjct: 388 MMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK-YGLEPKLSHYTTVVDLFGRA 446

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           GLL++A  F++++  E P   +W A+LGA KMHKN ++G   A+ +L ++P  PG + +L
Sbjct: 447 GLLDQAKSFIEEMPIE-PNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLL 505

Query: 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL 477
           SNIYA AG+   V  VR  M   GLKK    S VE++   ++FS  D SHP  N++Y+  
Sbjct: 506 SNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMW 565

Query: 478 DELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNL 537
           + L  + +E GYVP++      ++++E+E +L+YHSEKLALAF L+ T PG  IRI+KN+
Sbjct: 566 ENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNI 625

Query: 538 RMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R+C DCHSAIK++S+   REIIVRD  RFHHF+ GSCSC DYW
Sbjct: 626 RVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 192/386 (49%), Gaps = 10/386 (2%)

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           +T ++R S    ST  L     +   ++ P    ++ ++K C  L  L  G+ VH H+  
Sbjct: 60  DTNLLRPSLNPNSTTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMN 119

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA--- 191
           S + +DL ++ +++  YAK  ++++AR+VFD M  K VV W SMI+GY Q+G+A  A   
Sbjct: 120 SKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTA 179

Query: 192 -IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
            +    ++RD G+ P+      ++  C  LG    G+ +H      G   NV + +SL++
Sbjct: 180 LVLFLEMVRD-GLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVD 238

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MYARCG + ++R +FD +   N ++W A+ISG+   G G EA+ LF +M+  G      T
Sbjct: 239 MYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFT 298

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           + A+L + +  G +++G  + A M +    L G   +  ++ ++ ++G + +A K    +
Sbjct: 299 YSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNT-LLHMYAKSGNICDAKKVFDRL 357

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL--AGRMD 428
           +  K       +ML     H      VE+ E ++      P     LS + A   AG +D
Sbjct: 358 V--KVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLD 415

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVD 454
                  +M + GL+  + + T  VD
Sbjct: 416 EGLYYFELMKKYGLEPKLSHYTTVVD 441


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/582 (40%), Positives = 358/582 (61%), Gaps = 11/582 (1%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIF 63
            +  A  A+L+    LK L+++HAH+IV+G      +  KLL+   +  +G + YAQ +F
Sbjct: 2   SNEKAILALLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLF 61

Query: 64  FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS-PSNYTFSAVIKSCAHLSIL 122
             +  P +  +N++I   ++++   D+++FY +M+  + S P  +TFS V+K+C  +   
Sbjct: 62  HQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAE 121

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
              + VH  V   GYD+D+ V   LV  Y+    V +AR+VFD+MP + +VAWN+MIS +
Sbjct: 122 RKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCF 181

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q G  +EA+  +N MR   V+ D  T V ++++CA LG +++G  +H F    GLD ++
Sbjct: 182 SQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSL 241

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +  +LI+MYA+CG++ +A  IFD M   ++  W +MI GYG+HG G+EA+  F +M   
Sbjct: 242 YVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEA 301

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
            ++PN VTF+ +L  C+H GLVQEG + F  M  ++ L P V+H+ C+VDL+GRAG L++
Sbjct: 302 RIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDK 361

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A + V +         +W  +LG+CK+HKN  +G      L  +   + G  ++L+ IY 
Sbjct: 362 ALEIVSN--SSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIY- 418

Query: 423 LAGRMDRVEV--VRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
            AG  D+  V  +R ++  +G K   G+S +E+ ++ + F + DKSH  + E+Y+ L E+
Sbjct: 419 -AGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREV 477

Query: 481 MGRCREAGYV-PESESAMHELEE-EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           + +    GYV  ES S++  L   E  + S  YHSEKLA+AFGL RT+ G  IRIVKNLR
Sbjct: 478 IHQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLR 537

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCHS IK +SVA NREIIVRDR+RFHHFK G CSC DYW
Sbjct: 538 VCRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/557 (40%), Positives = 333/557 (59%), Gaps = 10/557 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +  H  ++  G+     + T LL      G +  A+R+F  +P  D    N +I   SK 
Sbjct: 30  EAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKH 89

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            +  ++   +  M   N    + +++++I     L  +N  R +    F      D+   
Sbjct: 90  GYVEEARNLFDNMTERN----SCSWNSMITCYCKLGDINSARLM----FDCNPVKDVVSW 141

Query: 145 AALVNFYAKSNNVDVARKVFDRMPD-KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
            A+++ Y KS  +  A+++F  M   ++ V WN+MIS Y Q G    AI +F  M+   V
Sbjct: 142 NAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENV 201

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            P   T V +L+ACA LG +D+G W+H +I  + L ++VVL  +LI+MY +CG +  A +
Sbjct: 202 KPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAID 261

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +F  +S  N+  W ++I G GM+G G EA+  F  M   G++P+ VTFV +LS C+H+GL
Sbjct: 262 VFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGL 321

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           +  G R F+ M   YGL PGVEH+ CMVDL GRAG L EA + ++  +  KP   V  ++
Sbjct: 322 LSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIR-AMPMKPNSMVLGSL 380

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           L AC++HK+  LG +V + LL ++P + G+YV LSN+YA   R D V   R +MI++G+ 
Sbjct: 381 LRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVH 440

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K  G S++EV+   + F  GD SHP   +I  +LDE+    +  G+VP + + +H++EEE
Sbjct: 441 KTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEE 500

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
           E+E ++RYHSE++A+AFGLM T PG TIR+VKNLR C DCHSA+K IS A  REIIVRDR
Sbjct: 501 EKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDR 560

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFHHF+ GSCSC DYW
Sbjct: 561 KRFHHFRNGSCSCNDYW 577



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 146/274 (53%), Gaps = 22/274 (8%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M+ +++ PS  +FS +++SCA      LG A HC +   G++ D+ +Q  L++FYAK  +
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM--RDFGVNPDSTTCVCVL 214
           +  A++VF  MP + VVA N+MIS   ++G+ +EA  LF+ M  R+        TC C  
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYC-- 118

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVN----VVLATSLINMYARCGNVSKAREIFDMM-S 269
               +LGDI+  R +         D N    VV   ++I+ Y +   +  A+E+F +M S
Sbjct: 119 ----KLGDINSARLM--------FDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGS 166

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             N + W  MIS Y   G    A+ +F +M++  V+P  VT V++LSACAH G +  G  
Sbjct: 167 ARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEW 226

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           +   +R +   +  V  +  ++D++ + G L  A
Sbjct: 227 IHGYIRTKRLKIDVVLGNA-LIDMYCKCGALEAA 259


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/542 (40%), Positives = 341/542 (62%), Gaps = 10/542 (1%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T LL++    G +  A+ +F  +   +  ++ ++I    K +   ++LL Y++M     S
Sbjct: 118 TTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFS 177

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA----ALVNFYAKSNNVDV 159
           P   T + ++ +CA L  L +G  +H H+     + D+ + A    ALVN YAK  ++  
Sbjct: 178 PDEVTMATLVSACAELKDLGVGMKLHSHI----REMDMKICAVLGSALVNMYAKCGDLKT 233

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACA 218
           AR+VFD++ DK V AW+++I GY +N  + EA+ LF  +     + P+  T + V++ACA
Sbjct: 234 ARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACA 293

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
           QLGD++ GRWVH++I       +V L  SLI+M+++CG++  A+ IFD MS  ++I+W +
Sbjct: 294 QLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNS 353

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           M++G+ +HG G EA+  F  M+   ++P+ +TF+ VL+AC+HAGLVQEG ++F  +   Y
Sbjct: 354 MVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALY 413

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
           G+    EH+ CMVDL  RAGLL EA +F++ V+  +P  A+W +MLGAC+++ N +LG E
Sbjct: 414 GVRLKSEHYGCMVDLLCRAGLLAEAREFIR-VMPLQPDGAIWGSMLGACRVYNNLELGEE 472

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458
            A  LL +EP N G Y++LSNIYA     + V+ VR +M +KG++K  G S+V +D   +
Sbjct: 473 AARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAH 532

Query: 459 LFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLAL 518
            F  GD SHP   EI   L ++  + + AGYV ++   +  +++ ++E S+  HSEKLAL
Sbjct: 533 SFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLAL 592

Query: 519 AFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLD 578
            +GL+++  G  I I+KNLR+C DCH+ IK +S    R+I +RDR RFHHFK GSCSC D
Sbjct: 593 CYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRD 652

Query: 579 YW 580
           YW
Sbjct: 653 YW 654



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 200/365 (54%), Gaps = 9/365 (2%)

Query: 31  LIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFST 88
           ++V G+   +  L KL++ V   G   + YA  +F      D   +N+++     +N   
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60

Query: 89  DSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL 147
            +L  Y  M+  S   P  +TF +++K CA L    +G+ +H  V      SDL+++  L
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
           +N YA   ++  AR +F+RM  ++ V W SMISGY +N    EA+ L+  M + G +PD 
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
            T   +++ACA+L D+ +G  +H  I    + +  VL ++L+NMYA+CG++  AR++FD 
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDK 240

Query: 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMR-AHGVRPNNVTFVAVLSACAHAGLVQE 326
           +S+ +V AW+A+I GY  +   TEA++LF  +     +RPN VT +AV+SACA  G ++ 
Sbjct: 241 LSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLET 300

Query: 327 GHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           G  V   + R + G    V  +  ++D+F + G ++ A K + D +  K   + W +M+ 
Sbjct: 301 GRWVHDYITRTQKG--HSVSLNNSLIDMFSKCGDIDAA-KRIFDSMSYKDLIS-WNSMVN 356

Query: 386 ACKMH 390
              +H
Sbjct: 357 GFALH 361


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/611 (37%), Positives = 356/611 (58%), Gaps = 35/611 (5%)

Query: 4   KQPHSPAYEAILKAGPR---LKPLQQVHAHLIVAGY------GRSRSMLTKLLSLV---- 50
           ++P++  Y  +LK   +   LK  +QVHAH+  +G        R   M  K  SLV    
Sbjct: 115 EKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSGSIGLYISNRLLDMYAKCGSLVDAEK 174

Query: 51  --------------------CDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDS 90
                                  G    A+ +F  +P+ D+F +  +I    + N   ++
Sbjct: 175 VFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEA 234

Query: 91  LLFYRRMIVSNISPSNY-TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
           L  YR M   + S SN  T S+ + + A +  L++G+ +H H+   G DSD  V  +L++
Sbjct: 235 LELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLD 294

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            Y K  +++ AR +FD+M ++ VV+W +MI  Y +NG  +E   LF  + +  + P+  T
Sbjct: 295 MYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFT 354

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
              VL ACA L   DLG+ +H ++V  G D     A++L++MY++CG++  A+ +F+++ 
Sbjct: 355 FAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILP 414

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
           + ++ +WT+++ GY  HG   +A+  F  +   G +P+ + F+ VLSACAHAGLV +G  
Sbjct: 415 QPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLE 474

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
            F S+++++GL   ++H+ C++DL  RAG   EA   + + +  KP   +W A+LG C++
Sbjct: 475 YFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINE-MPIKPDKYIWAALLGGCRI 533

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           H N +L    A+ L  +EPENP  YV L+NIYA AG       +R  M  +G+ K  G S
Sbjct: 534 HGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMS 593

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
            +E+ ++ ++FS+GD SHP + EI +YL EL  R +E GYVP++   +H++E E++E +L
Sbjct: 594 WIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEENL 653

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
            YHSEKLA+AFG++ T  G  I++ KNLR CVDCH+AIKFIS  T R+IIVRD  RFH F
Sbjct: 654 SYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCF 713

Query: 570 KRGSCSCLDYW 580
           + GSCSC DYW
Sbjct: 714 EGGSCSCKDYW 724


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/521 (40%), Positives = 322/521 (61%), Gaps = 1/521 (0%)

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           +++F  +   D   +NTL++  ++     ++L F R+M      P ++T S V+   A  
Sbjct: 124 RKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAEC 183

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
           + +  G  VH   F +G+DSD+ V ++L++ YA     D + KVFD +P +  + WNS++
Sbjct: 184 ADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLL 243

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           +G  QNG  +EA+G+F  M   GV P   T   ++  C  L  +  G+ +H +++  G +
Sbjct: 244 AGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFE 303

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            NV +++SLI+MY +CG +S A  IFD MS  +V++WTAMI GY +HG   EA+ LF RM
Sbjct: 304 DNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERM 363

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
                +PN++TF+AVL+AC+HAGLV +G + F SM   YG++P +EH   + D  GRAG 
Sbjct: 364 ELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGE 423

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L+EAY F+   +  KP  +VW+ +L AC++HKN  L  EVA+ ++ +EP + G +V+LSN
Sbjct: 424 LDEAYNFISK-MQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSN 482

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           +Y+ +GR +    +R  M +KG+KK    S +EV  K ++F   D+SHP  + I   L+ 
Sbjct: 483 MYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNA 542

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
              +    G+VP +E    ++EEE + Y L  HSEKLA+ FG++ T  G  IR++KNLR+
Sbjct: 543 FSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRV 602

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C+DCH+  KFIS   +REI+VRD  RFHHFK G+CSC D+W
Sbjct: 603 CIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 171/368 (46%), Gaps = 35/368 (9%)

Query: 89  DSLLFYRRMIVSNISPSNY--TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
           D++  + RM  S    S+   +  A +KSCA L +  LG ++H     SG  +D     A
Sbjct: 31  DAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANA 90

Query: 147 LVNFYAK-------------------SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           L+N Y K                   S   +  RKVFD M ++ VV+WN+++ G  + G 
Sbjct: 91  LLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGR 150

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
             EA+G    M   G  PDS T   VL   A+  D+  G  VH F    G D +V + +S
Sbjct: 151 HHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSS 210

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           LI+MYA C     + ++FD +   + I W ++++G   +G   EA+ +F RM   GVRP 
Sbjct: 211 LIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPV 270

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEA 363
            VTF +++  C +   ++ G ++ A     Y +  G E +V     ++D++ + G ++ A
Sbjct: 271 PVTFSSLIPVCGNLASLRFGKQLHA-----YVICGGFEDNVFISSSLIDMYCKCGEISIA 325

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
           +     +    P    WTAM+    +H      + + E  + +    P H   L+ + A 
Sbjct: 326 HCIFDKM--SSPDVVSWTAMIMGYALHGPAREALVLFER-MELGNAKPNHITFLAVLTAC 382

Query: 424 --AGRMDR 429
             AG +D+
Sbjct: 383 SHAGLVDK 390



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 151/315 (47%), Gaps = 5/315 (1%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           +VH      G+     + + L+ +  +     Y+ ++F  +P  D  L+N+L+   ++  
Sbjct: 191 EVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNG 250

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
              ++L  +RRM+ + + P   TFS++I  C +L+ L  G+ +H +V   G++ ++ + +
Sbjct: 251 SVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISS 310

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           +L++ Y K   + +A  +FD+M    VV+W +MI GY  +G A+EA+ LF  M      P
Sbjct: 311 SLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKP 370

Query: 206 DSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE- 263
           +  T + VL AC+  G +D G ++        G+   +    +L +   R G + +A   
Sbjct: 371 NHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNF 430

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA-G 322
           I  M  +     W+ ++    +H     A E+  ++    + P ++    VLS    A G
Sbjct: 431 ISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIME--LEPRSIGSHVVLSNMYSASG 488

Query: 323 LVQEGHRVFASMRQE 337
              E   +  SMR++
Sbjct: 489 RWNEAAHLRESMRKK 503


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/573 (41%), Positives = 338/573 (58%), Gaps = 11/573 (1%)

Query: 15   LKAGPRLK-PL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
            LK+  RL  PL   +Q+HA  +      +  +LT LLSL    G +  AQR+F  +P P 
Sbjct: 556  LKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPS 615

Query: 71   SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
            +  +  LI     A    +++   R    + + P ++T   V+ +CA ++ L  G  V  
Sbjct: 616  TVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWR 675

Query: 131  HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
                 G    + V  A V+ Y K   +  AR+VFD+M  K  VAW +M+ GY  NG  +E
Sbjct: 676  AAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPRE 735

Query: 191  AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
            A+ LF  M+  G+ PD       L+AC +LG +DLGR     +       N VL T+LI+
Sbjct: 736  ALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALID 795

Query: 251  MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
            MYA+CG+  +A  +F  M + ++I W AMI G GM G+   A  L  +M   GV+ N+ T
Sbjct: 796  MYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNT 855

Query: 311  FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
            F+ +L +C H GL+Q+G R F +M + Y + P +EH+ CMVDL  RAGLL EA++ V D+
Sbjct: 856  FIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDM 915

Query: 371  IGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
                P PA   +  A+LG CK+H+N +L   V + L+ +EP N G+YVMLSNIY+  GR 
Sbjct: 916  ----PMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRW 971

Query: 428  DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
            +    +R  M  KG++K    S VE + K + F +GDKSHP +++IY+ LDEL    +  
Sbjct: 972  EDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTM 1031

Query: 488  GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
            GY P +E  M ++E+EE+E++L +HSEKLA+AF L+ T PG TIR+ KNLR+C DCH+AI
Sbjct: 1032 GYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAI 1091

Query: 548  KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            K +S  T+REIIVRD  RFH F+ GSCSC DYW
Sbjct: 1092 KLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/658 (37%), Positives = 357/658 (54%), Gaps = 80/658 (12%)

Query: 1   MKNKQPH-SPAYEA--------ILKAGPRLKPLQQVHAHLIV-AGYGRSRSMLTKLLSLV 50
           +  ++P  SP + A        IL   P  K L+++H+ +++      + S+  KL+   
Sbjct: 22  LTTQKPQLSPKFTALTEDLCNKILDVNPDAKTLKKLHSKILIDQNLHPNPSLGIKLMRAY 81

Query: 51  CDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFS 110
              G   Y + IF  I   +   FN +I          D+LL ++ M      P NYT+ 
Sbjct: 82  AACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYP 141

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
            V+K+C+    L +G  +H  V   G D +L++   LV+ Y K   +D AR+V D MP +
Sbjct: 142 CVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGR 201

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA------------ 218
            +V+WNSM++GY QNG   +A+ L   M D  + PD+ T   +L A              
Sbjct: 202 DMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKD 261

Query: 219 ---QLGDIDLGRW-------VHEFIVGQGLDVNVVL--------ATSLINMYARCGNVS- 259
              +L +  L  W       V+  +  + +D+ + +        A S+ ++   CG++S 
Sbjct: 262 MFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSA 321

Query: 260 -------------------------------------KAREIFDMMSELNVIAWTAMISG 282
                                                +AR +FD M   +V++WT+MIS 
Sbjct: 322 AVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISA 381

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
           YGM G G +AV LF +MR  G  P+ + FV+VL+AC+HAGLV EG   F  M  EYG+ P
Sbjct: 382 YGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLM-AEYGITP 440

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
           G+EH+ CMVDL GRAG ++EAY   + +  E P   VW ++L AC+++ + ++ +  A+H
Sbjct: 441 GIEHYNCMVDLLGRAGKIDEAYHLTRQMPME-PNERVWGSLLSACRVYSSMNIALLAADH 499

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
           L  + PE  G+YV+LSNIYA AGR   VE VR+IM  KG+KK  G S VE++   Y F  
Sbjct: 500 LFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLA 559

Query: 463 GDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGL 522
           GD+SH  + EIY+ L  L+GR +E GY+PE++SA+H++EEE++E  L  HSEKLA+ F +
Sbjct: 560 GDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAI 619

Query: 523 MRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           + T PG TIRI KN+R+C DCH A K IS    REII+RD  RFHHF+ G CSC DYW
Sbjct: 620 LNTKPGSTIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/573 (41%), Positives = 338/573 (58%), Gaps = 11/573 (1%)

Query: 15   LKAGPRLK-PL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
            LK+  RL  PL   +Q+HA  +      +  +LT LLSL    G +  AQR+F  +P P 
Sbjct: 532  LKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPS 591

Query: 71   SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
            +  +  LI     A    +++   R    + + P ++T   V+ +CA ++ L  G  V  
Sbjct: 592  TVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWR 651

Query: 131  HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
                 G    + V  A V+ Y K   +  AR+VFD+M  K  VAW +M+ GY  NG  +E
Sbjct: 652  AAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPRE 711

Query: 191  AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
            A+ LF  M+  G+ PD       L+AC +LG +DLGR     +       N VL T+LI+
Sbjct: 712  ALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALID 771

Query: 251  MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
            MYA+CG+  +A  +F  M + ++I W AMI G GM G+   A  L  +M   GV+ N+ T
Sbjct: 772  MYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNT 831

Query: 311  FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
            F+ +L +C H GL+Q+G R F +M + Y + P +EH+ CMVDL  RAGLL EA++ V D+
Sbjct: 832  FIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDM 891

Query: 371  IGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
                P PA   +  A+LG CK+H+N +L   V + L+ +EP N G+YVMLSNIY+  GR 
Sbjct: 892  ----PMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRW 947

Query: 428  DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
            +    +R  M  KG++K    S VE + K + F +GDKSHP +++IY+ LDEL    +  
Sbjct: 948  EDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTM 1007

Query: 488  GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
            GY P +E  M ++E+EE+E++L +HSEKLA+AF L+ T PG TIR+ KNLR+C DCH+AI
Sbjct: 1008 GYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAI 1067

Query: 548  KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            K +S  T+REIIVRD  RFH F+ GSCSC DYW
Sbjct: 1068 KLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/560 (39%), Positives = 341/560 (60%), Gaps = 7/560 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH  L+ +G+ +   + TKL+++  + G I  A+++F        +++N L    +    
Sbjct: 100 VHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGC 159

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCA----HLSILNLGRAVHCHVFVSGYDSDLH 142
             + L  Y +M    I    +T++ V+K+C      +S L  G+ +H H+   GY++++H
Sbjct: 160 GKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIH 219

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM--RD 200
           V   L++ YAK  +V  A  VF  MP K+ V+W++MI+ + +N    +A+ LF LM    
Sbjct: 220 VMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEA 279

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
               P+S T V VL ACA L  ++ G+ +H +I+ +GLD  + +  +LI MY RCG +  
Sbjct: 280 HDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILM 339

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
            + +FD M   +V++W ++IS YGMHG+G +A+++F  M   G  P+ ++F+ VL AC+H
Sbjct: 340 GQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSH 399

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
           AGLV+EG  +F SM  +Y + PG+EH+ CMVDL GRA  L+EA K ++D+  E P P VW
Sbjct: 400 AGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFE-PGPTVW 458

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
            ++LG+C++H N +L    +  L  +EP N G+YV+L++IYA A      + V  ++  +
Sbjct: 459 GSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEAR 518

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
           GL+K  G S +EV +K Y F   D+ +P   EI+  L +L    +  GYVP++   +++L
Sbjct: 519 GLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDL 578

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
           +EEE+E  +  HSEKLA+AFGL+ T  G TIRI KNLR+C DCH+  KFIS   NREI+V
Sbjct: 579 DEEEKERIVLGHSEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILV 638

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RD  RFHHFK G CSC DYW
Sbjct: 639 RDVNRFHHFKDGVCSCGDYW 658



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 182/380 (47%), Gaps = 41/380 (10%)

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
           +P+  TF  +I SCA  + L+ G  VH  +  SG+D D  +   L+N Y +  ++D ARK
Sbjct: 75  NPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARK 134

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA---- 218
           VFD   ++++  WN++       G  KE + L+  M   G+  D  T   VL AC     
Sbjct: 135 VFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSEL 194

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
            +  +  G+ +H  I+  G + N+ + T+L+++YA+ G+VS A  +F  M   N ++W+A
Sbjct: 195 SVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSA 254

Query: 279 MISGYGMHGYGTEAVELFHRM--RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-- 334
           MI+ +  +    +A+ELF  M   AH   PN+VT V VL ACA    +++G  +   +  
Sbjct: 255 MIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILR 314

Query: 335 RQEYGLLPGVEHHVCM----------------------------VDLFGRAGLLNEAYKF 366
           R    +LP +   + M                            + ++G  G   +A + 
Sbjct: 315 RGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQI 374

Query: 367 VKDVI--GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG--HYVMLSNIYA 422
            +++I  G  P+   +  +LGAC      + G  + E +LS    +PG  HY  + ++  
Sbjct: 375 FENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLG 434

Query: 423 LAGRMDR-VEVVRNIMIQKG 441
            A R+D  ++++ ++  + G
Sbjct: 435 RANRLDEAIKLIEDMHFEPG 454



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 145/273 (53%), Gaps = 7/273 (2%)

Query: 21  LKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTL 77
           + PLQ   ++HAH++  GY  +  ++T LL +    G ++YA  +F  +P+ +   ++ +
Sbjct: 196 VSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAM 255

Query: 78  IIRNSKANFSTDSLLFYRRMIVS--NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
           I   +K      +L  ++ M++   +  P++ T   V+++CA L+ L  G+ +H ++   
Sbjct: 256 IACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRR 315

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G DS L V  AL+  Y +   + + ++VFD M ++ VV+WNS+IS Y  +GF K+AI +F
Sbjct: 316 GLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIF 375

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYAR 254
             M   G +P   + + VL AC+  G ++ G+ + E ++ +  +   +     ++++  R
Sbjct: 376 ENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGR 435

Query: 255 CGNVSKA-REIFDMMSELNVIAWTAMISGYGMH 286
              + +A + I DM  E     W +++    +H
Sbjct: 436 ANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIH 468



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 127/277 (45%), Gaps = 20/277 (7%)

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           N +I    + G  K+AI L         NP   T   ++ +CAQ   +  G  VH  +V 
Sbjct: 51  NQLIQSLCKGGNLKQAIHLLCC----EPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVS 106

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
            G D +  LAT LINMY   G++ +AR++FD   E  +  W A+     M G G E ++L
Sbjct: 107 SGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDL 166

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGL----VQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           + +M   G+  +  T+  VL AC  + L    +Q+G  + A + + +G    +     ++
Sbjct: 167 YVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILR-HGYEANIHVMTTLL 225

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAP--AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
           D++ + G    +  +   V    P      W+AM+ AC       +       L+ +E  
Sbjct: 226 DVYAKFG----SVSYANSVFCAMPTKNFVSWSAMI-ACFAKNEMPMKALELFQLMMLEAH 280

Query: 410 N--PGHYVMLSNIYALAG--RMDRVEVVRNIMIQKGL 442
           +  P    M++ + A AG   +++ +++   ++++GL
Sbjct: 281 DSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGL 317


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/562 (38%), Positives = 339/562 (60%), Gaps = 4/562 (0%)

Query: 19  PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           P +   +++HA +  +   R   +  +L++     G+   A ++F  +P  D   +N+LI
Sbjct: 53  PSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLI 112

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
              S+         FY      ++ P+  T  ++I +C     L+ G+ +H      G  
Sbjct: 113 SGFSRC-LHMSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKYIHGFGIKVGGT 169

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
            ++ V  +L+N Y KS ++  A ++F+ +PD + V+WNS+I+    NG A+E I  FN M
Sbjct: 170 LEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKM 229

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
           R  G+  D  T + +L AC  LG   L   +H  +   G    + +AT+L++ YA+ G +
Sbjct: 230 RRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRL 289

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
           S +  +F  +   + +AWTAM++GY  HG G EA++LF  M   G+ P++VTF  +LSAC
Sbjct: 290 SASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSAC 349

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           +H+GLV EG   F  M + YG+ P V+H+ CMVDL GR GLLN+AY+ ++++  E P   
Sbjct: 350 SHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPME-PNAG 408

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
           VW A+LGAC++H N +LG EVAEHL+++EP +P +Y+MLSN+Y+ +        VR ++ 
Sbjct: 409 VWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLK 468

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
           ++GLK+  GYS++E   KN+ F +GD+SHP T +IY  L+EL+G+ R+AGY  ++E  + 
Sbjct: 469 ERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQ 528

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
           ++EEE +E  +  HSEKLA+AFGL+ +  G  + I KNLR+C DCHS  K IS+   R I
Sbjct: 529 DVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTI 588

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           I+RD  RFHHF  G CSC DYW
Sbjct: 589 IIRDPKRFHHFSDGFCSCADYW 610


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/528 (40%), Positives = 329/528 (62%), Gaps = 7/528 (1%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L++     G+I  AQ++F  IP  D   +N +I   ++      +L  ++ M+ +N+ 
Sbjct: 145 TALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVK 204

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   T + V+ +CA    + LGR VH  +   G+ S+L +  AL++ Y+K   V+ A ++
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACEL 264

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
            + + +K V++WN++I GY      KEA+ LF  M   G  P+  T + +L ACA LG I
Sbjct: 265 LEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 324

Query: 224 DLGRWVHEFIVGQGLDVNVV----LATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTA 278
           D+GRW+H +I  +   V V     L TSLI+MYA+CG++  A ++ D  +   ++  W A
Sbjct: 325 DIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNA 384

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           MI G+ MHG    A ++F RMR +G+ P+++TFV +LSAC+H+G++  G  +F SMRQ+Y
Sbjct: 385 MIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDY 444

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
            + P +EH+ CM+DL G +GL  EA + + + +  +P   +W ++L ACK+H N +LG  
Sbjct: 445 NITPKLEHYGCMIDLLGHSGLFKEAEEMI-NTMPMEPDGVIWCSLLKACKIHGNLELGES 503

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV-GYSTVEVDQKN 457
            A+ L+ +EPENPG YV+LSNIYA AG+ + V  +R ++  KG+KK V G S++E+D   
Sbjct: 504 FAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVV 563

Query: 458 YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLA 517
           + F +GDK HP   EIY  L+E+     EAG+VP++   + E+EEE +E +LR+HSEKLA
Sbjct: 564 HEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 623

Query: 518 LAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
           +AFGL+ T PG  + IVKNLR+C +CH A K IS    REII RDR R
Sbjct: 624 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 671



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 199/394 (50%), Gaps = 43/394 (10%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           + YA  +F  IP P+  ++N +   ++ ++    +L  Y  MI   + P+ +TF  ++KS
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR--------- 166
           CA       G+ +H HV   G+D DL+V  +L++ YA++  ++ A+KVFDR         
Sbjct: 85  CAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSY 144

Query: 167 ----------------------MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
                                 +P K VV+WN+MISGY + G  K+A+ LF  M    V 
Sbjct: 145 TALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVK 204

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD +T   V++ACAQ G I+LGR VH +I   G   N+ +  +LI++Y++CG V  A E+
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACEL 264

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
            + +S  +VI+W  +I GY       EA+ LF  M   G  PN+VT +++L ACAH G +
Sbjct: 265 LEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 324

Query: 325 QEGHRVFASMRQEYGLLPGV------EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
             G  +   + ++   L GV           ++D++ + G ++ A + V D      + +
Sbjct: 325 DIGRWIHVYIDKK---LKGVVVTNASSLRTSLIDMYAKCGDIDAAPQ-VSDSSAFNRSLS 380

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLS--VEPEN 410
            W AM+    MH   +   ++   +    +EP++
Sbjct: 381 TWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDD 414



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 173/358 (48%), Gaps = 47/358 (13%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH+ +   G+G +  ++  L+ L    G +  A  +   + + D   +NTLI   +  
Sbjct: 227 RQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHM 286

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH-------VFVSGY 137
           N   ++LL ++ M+ S  +P++ T  +++ +CAHL  +++GR +H +       V V+  
Sbjct: 287 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNA 346

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMISGYEQNGFAKEAIGLFN 196
            S   ++ +L++ YAK  ++D A +V D    ++S+  WN+MI G+  +G A  A  +F+
Sbjct: 347 SS---LRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFS 403

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            MR  G+ PD  T V +L+AC+  G +DLGR                      N++    
Sbjct: 404 RMRKNGIEPDDITFVGLLSACSHSGMLDLGR----------------------NIF---- 437

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
                R+ +++  +L    +  MI   G  G   EA E+ + M    + P+ V + ++L 
Sbjct: 438 --RSMRQDYNITPKLE--HYGCMIDLLGHSGLFKEAEEMINTMP---MEPDGVIWCSLLK 490

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           AC   G ++ G      + +     PG   +V + +++  AG  NE  K ++ ++ +K
Sbjct: 491 ACKIHGNLELGESFAKKLIKIEPENPG--SYVLLSNIYATAGKWNEVXK-IRTLLNDK 545


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/527 (41%), Positives = 323/527 (61%), Gaps = 17/527 (3%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   +  +I   S+   S ++L  +R+MI S   P+  T  +V+ +CA L   + G  +H
Sbjct: 365 DVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIH 424

Query: 130 CHVF----------VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNS 177
            +              G D DL V  AL++ Y+K  +   AR +FD +P  +++VV W  
Sbjct: 425 AYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 484

Query: 178 MISGYEQNGFAKEAIGLFNLM--RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           MI G+ Q G + +A+ LF  M    +GV P++ T  C+L ACA L  I +G+ +H +++ 
Sbjct: 485 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 544

Query: 236 QGL--DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
                     +A  LI+MY++CG+V  AR +FD MS+ + I+WT+M++GYGMHG G+EA+
Sbjct: 545 HHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 604

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           ++F +MR  G  P+++TF+ VL AC+H G+V +G   F SM  +YGL P  EH+ C +DL
Sbjct: 605 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDL 664

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
             R+G L++A++ VKD+  E P   VW A+L AC++H N +L       L+ +  EN G 
Sbjct: 665 LARSGRLDKAWRTVKDMPME-PTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGS 723

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           Y ++SNIYA AGR   V  +R++M + G+KK  G S V+  +    F +GD+SHP + +I
Sbjct: 724 YTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQI 783

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           Y  L+ L+ R +  GYVPE+  A+H+++EEE+   L  HSEKLALA+GL+ TSPG  IRI
Sbjct: 784 YALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRI 843

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCHSA  +IS   + EI+VRD  RFHHFK GSCSC  YW
Sbjct: 844 TKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 141/657 (21%), Positives = 261/657 (39%), Gaps = 141/657 (21%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAG--------------------YGRSRSMLTKLLSLV 50
           + ++LK       + Q+H  +I +G                    +   RS+ T +++  
Sbjct: 40  FASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASY 99

Query: 51  CDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFS 110
              G   YA  +   +    +  +N LI  + K      ++    RM+ +   P ++T  
Sbjct: 100 LACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLP 159

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
            V+K+C  L     G A H  +  +G++S++ +  ALV  Y++  +++ A  +FD +  +
Sbjct: 160 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 219

Query: 171 ---SVVAWNSMISGYEQNGFAKEAIGLFNLM------RDFGVNPDSTTCVCVLAACAQLG 221
               V++WNS++S + ++  A  A+ LF+ M      +      D  + V +L AC  L 
Sbjct: 220 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 279

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            +   + VH   +  G   +V +  +LI+ YA+CG +  A ++F+MM   +V++W AM++
Sbjct: 280 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 339

Query: 282 GYGMHGYGTEAVELFHRMRAH-----------------------------------GVRP 306
           GY   G    A ELF  MR                                     G  P
Sbjct: 340 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLP 399

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFA--------SMRQEYGLLPGVEHHV----CMVDLF 354
           N VT ++VLSACA  G   +G  + A        ++  ++G   G +  +     ++D++
Sbjct: 400 NCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFG---GEDEDLMVYNALIDMY 456

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            +      A     D+  E+     WT M+G    + + +  +++   ++S EP     Y
Sbjct: 457 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMIS-EP-----Y 510

Query: 415 VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV-------------------GYSTV-EVD 454
            +  N Y ++  +     +  I I K +  +V                    YS   +VD
Sbjct: 511 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVD 570

Query: 455 QKNYLF-SMGDKS-------------HPNTNEIYQYLDELMGRCREAGYVPES------- 493
              ++F SM  KS             H   +E     D++    R+AG+VP+        
Sbjct: 571 TARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM----RKAGFVPDDITFLVVL 626

Query: 494 ---------ESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGM--TIRIVKNLRM 539
                    +  +   +    +Y L   +E  A A  L+  S  +    R VK++ M
Sbjct: 627 YACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPM 683


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/527 (41%), Positives = 323/527 (61%), Gaps = 17/527 (3%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   +  +I   S+   S ++L  +R+MI S   P+  T  +V+ +CA L   + G  +H
Sbjct: 372 DVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIH 431

Query: 130 CHVF----------VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNS 177
            +              G D DL V  AL++ Y+K  +   AR +FD +P  +++VV W  
Sbjct: 432 AYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 491

Query: 178 MISGYEQNGFAKEAIGLFNLM--RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           MI G+ Q G + +A+ LF  M    +GV P++ T  C+L ACA L  I +G+ +H +++ 
Sbjct: 492 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 551

Query: 236 QGL--DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
                     +A  LI+MY++CG+V  AR +FD MS+ + I+WT+M++GYGMHG G+EA+
Sbjct: 552 HHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 611

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           ++F +MR  G  P+++TF+ VL AC+H G+V +G   F SM  +YGL P  EH+ C +DL
Sbjct: 612 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDL 671

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
             R+G L++A++ VKD+  E P   VW A+L AC++H N +L       L+ +  EN G 
Sbjct: 672 LARSGRLDKAWRTVKDMPME-PTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGS 730

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           Y ++SNIYA AGR   V  +R++M + G+KK  G S V+  +    F +GD+SHP + +I
Sbjct: 731 YTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQI 790

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           Y  L+ L+ R +  GYVPE+  A+H+++EEE+   L  HSEKLALA+GL+ TSPG  IRI
Sbjct: 791 YALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRI 850

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCHSA  +IS   + EI+VRD  RFHHFK GSCSC  YW
Sbjct: 851 TKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 141/657 (21%), Positives = 261/657 (39%), Gaps = 141/657 (21%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAG--------------------YGRSRSMLTKLLSLV 50
           + ++LK       + Q+H  +I +G                    +   RS+ T +++  
Sbjct: 47  FASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASY 106

Query: 51  CDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFS 110
              G   YA  +   +    +  +N LI  + K      ++    RM+ +   P ++T  
Sbjct: 107 LACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLP 166

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
            V+K+C  L     G A H  +  +G++S++ +  ALV  Y++  +++ A  +FD +  +
Sbjct: 167 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 226

Query: 171 ---SVVAWNSMISGYEQNGFAKEAIGLFNLM------RDFGVNPDSTTCVCVLAACAQLG 221
               V++WNS++S + ++  A  A+ LF+ M      +      D  + V +L AC  L 
Sbjct: 227 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 286

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            +   + VH   +  G   +V +  +LI+ YA+CG +  A ++F+MM   +V++W AM++
Sbjct: 287 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 346

Query: 282 GYGMHGYGTEAVELFHRMRAH-----------------------------------GVRP 306
           GY   G    A ELF  MR                                     G  P
Sbjct: 347 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLP 406

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFA--------SMRQEYGLLPGVEHHV----CMVDLF 354
           N VT ++VLSACA  G   +G  + A        ++  ++G   G +  +     ++D++
Sbjct: 407 NCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFG---GEDEDLMVYNALIDMY 463

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            +      A     D+  E+     WT M+G    + + +  +++   ++S EP     Y
Sbjct: 464 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMIS-EP-----Y 517

Query: 415 VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV-------------------GYSTV-EVD 454
            +  N Y ++  +     +  I I K +  +V                    YS   +VD
Sbjct: 518 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVD 577

Query: 455 QKNYLF-SMGDKS-------------HPNTNEIYQYLDELMGRCREAGYVPES------- 493
              ++F SM  KS             H   +E     D++    R+AG+VP+        
Sbjct: 578 TARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM----RKAGFVPDDITFLVVL 633

Query: 494 ---------ESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGM--TIRIVKNLRM 539
                    +  +   +    +Y L   +E  A A  L+  S  +    R VK++ M
Sbjct: 634 YACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPM 690


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/517 (40%), Positives = 323/517 (62%), Gaps = 7/517 (1%)

Query: 70  DSFLFNTLIIRNSKANFSTDSL---LFYRRMIVSNISPSNYTFSAVIKSCAHL-SILNLG 125
           D+FL NTLI  ++ +   +  L    F+  M+   + P+ +TF  ++K+CA L    ++G
Sbjct: 87  DAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVG 146

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYA--KSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
              H      G+ +D +V   L++ Y+      +  AR VFDRMP +S V W++MI GY 
Sbjct: 147 LQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYV 206

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           + G + +A+ LF  M+  GV  D  T + VLAA   LG ++L RWV  F+  +G+  +V 
Sbjct: 207 RGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVT 266

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           L  +LI+  A+CG+V  A  +F+ M + +V++WT++I    M G G EAV +F  M+  G
Sbjct: 267 LCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAG 326

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           V P++V F+ VL+AC+HAG+V EG   F +M+ EYG+ P +EH+ CMVD+FGRAG++  A
Sbjct: 327 VPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERA 386

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
            +FV+  +  +P P +W +++ AC+ H   +LG  +   LL   P +  +Y+MLSN++AL
Sbjct: 387 MEFVR-TMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFAL 445

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
             R      +R  M ++G+KK  G S VE+D + + F  GD+SHP   +IY+ ++E+   
Sbjct: 446 TQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARE 505

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
            R  G++  +   + +L+EE++E +L++HSEKLA+AF L+RT PG  +R+VKNLR+C DC
Sbjct: 506 LRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDC 565

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           H+AIK IS    REI+VRDR RFH FK GSCSC D+W
Sbjct: 566 HAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/517 (40%), Positives = 323/517 (62%), Gaps = 7/517 (1%)

Query: 70  DSFLFNTLIIRNSKANFSTDSL---LFYRRMIVSNISPSNYTFSAVIKSCAHL-SILNLG 125
           D+FL NTLI  ++ +   +  L    F+  M+   + P+ +TF  ++K+CA L    ++G
Sbjct: 87  DAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVG 146

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYA--KSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
              H      G+ +D +V   L++ Y+      +  AR VFDRMP +S V W++MI GY 
Sbjct: 147 LQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYV 206

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           + G + +A+ LF  M+  GV  D  T + VLAA   LG ++L RWV  F+  +G+  +V 
Sbjct: 207 RGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVT 266

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           L  +LI+  A+CG+V  A  +F+ M + +V++WT++I    M G G EAV +F  M+  G
Sbjct: 267 LCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAG 326

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           V P++V F+ VL+AC+HAG+V EG   F +M+ EYG+ P +EH+ CMVD+FGRAG++  A
Sbjct: 327 VPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERA 386

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
            +FV+  +  +P P +W +++ AC+ H   +LG  +   LL   P +  +Y+MLSN++AL
Sbjct: 387 MEFVR-TMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFAL 445

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
             R      +R  M ++G+KK  G S VE+D + + F  GD+SHP   +IY+ ++E+   
Sbjct: 446 TQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARE 505

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
            R  G++  +   + +L+EE++E +L++HSEKLA+AF L+RT PG  +R+VKNLR+C DC
Sbjct: 506 LRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDC 565

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           H+AIK IS    REI+VRDR RFH FK GSCSC D+W
Sbjct: 566 HAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/558 (39%), Positives = 340/558 (60%), Gaps = 3/558 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           Q+VHAH+I   Y     + T+L+        +  A+ +F  +P  +   +  +I   S+ 
Sbjct: 78  QRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQR 137

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            +++ +L  + +M+ S   P+ +TF+ V+ SC   S   LGR +H H+    Y++ ++V 
Sbjct: 138 GYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVG 197

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ++L++ YAK   +  AR +F  +P++ VV+  ++ISGY Q G  +EA+ LF  ++  G+ 
Sbjct: 198 SSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQ 257

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +  T   VL A + L  +D G+ VH  ++   +   VVL  SLI+MY++CGN++ AR I
Sbjct: 258 SNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRI 317

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM-RAHGVRPNNVTFVAVLSACAHAGL 323
           FD + E  VI+W AM+ GY  HG G E +ELF+ M   + V+P++VT +AVLS C+H GL
Sbjct: 318 FDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGL 377

Query: 324 VQEGHRVFASMRQ-EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
             +G  +F  M   +  + P  +H+ C+VD+ GRAG +  A++FVK +  E P+ A+W  
Sbjct: 378 EDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFE-PSAAIWGC 436

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LGAC +H N D+G  V   LL +EPEN G+YV+LSN+YA AGR + V  +RN+M++K +
Sbjct: 437 LLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAV 496

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
            K  G S +E+DQ  + F   D SHP   E+   + EL  R +EAGYVP+    +H+++E
Sbjct: 497 TKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDE 556

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           E++E  L  HSEKLAL FGL+ T   + IR++KNLR+CVDCH+  K+ S    RE+ +RD
Sbjct: 557 EQKEKILLSHSEKLALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRD 616

Query: 563 RLRFHHFKRGSCSCLDYW 580
           + RFH    G CSC DYW
Sbjct: 617 KNRFHRIVGGKCSCGDYW 634



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 165/307 (53%), Gaps = 10/307 (3%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M +  +  +   ++ V+  C     +  G+ VH H+  + Y   ++++  L+ FY K ++
Sbjct: 49  MALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDS 108

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           +  AR VFD MP+++VV+W +MIS Y Q G+A +A+ LF  M   G  P+  T   VL +
Sbjct: 109 LRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTS 168

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C       LGR +H  I+    + +V + +SL++MYA+ G + +AR IF  + E +V++ 
Sbjct: 169 CIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSC 228

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MR 335
           TA+ISGY   G   EA+ELF R++  G++ N VT+ +VL+A +    +  G +V    +R
Sbjct: 229 TAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLR 288

Query: 336 QEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
            E   +P  V     ++D++ + G L  A + + D + E+   + W AML     H    
Sbjct: 289 SE---VPSYVVLQNSLIDMYSKCGNLTYARR-IFDTLHERTVIS-WNAMLVGYSKHGE-- 341

Query: 395 LGVEVAE 401
            G EV E
Sbjct: 342 -GREVLE 347


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/566 (37%), Positives = 349/566 (61%), Gaps = 5/566 (0%)

Query: 11  YEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y  +LK     K L Q   VHAH++ + +     M   LL++    G +  A+++F  +P
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             D   + TLI   S+ +   D+LLF+ +M+    SP+ +T S+VIK+ A       G  
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H      G+DS++HV +AL++ Y +   +D A+ VFD +  ++ V+WN++I+G+ +   
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            ++A+ LF  M   G  P   +   +  AC+  G ++ G+WVH +++  G  +      +
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 302

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L++MYA+ G++  AR+IFD +++ +V++W ++++ Y  HG+G EAV  F  MR  G+RPN
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            ++F++VL+AC+H+GL+ EG   +  M+++ G++P   H+V +VDL GRAG LN A +F+
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFI 421

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           +++  E P  A+W A+L AC+MHKN +LG   AEH+  ++P++PG +V+L NIYA  GR 
Sbjct: 422 EEMPIE-PTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRW 480

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           +    VR  M + G+KK    S VE++   ++F   D+ HP   EI +  +E++ + +E 
Sbjct: 481 NDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKEL 540

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           GYVP++   +  ++++ERE +L+YHSEK+ALAF L+ T PG TI I KN+R+C DCH+AI
Sbjct: 541 GYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAI 600

Query: 548 KFISVATNREIIVRDRLRFHHFKRGS 573
           K  S    REIIVRD  RFHHFK  S
Sbjct: 601 KLASKVVGREIIVRDTNRFHHFKDAS 626


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/611 (37%), Positives = 345/611 (56%), Gaps = 37/611 (6%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   +  + KA  RLK L     +H  +I A       +L  L++    +G    A R+
Sbjct: 171 PNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRV 230

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P  D   +N +I   +       +LL ++ M + ++ P+  T  +V+ +CA    L
Sbjct: 231 FTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDL 290

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFY------------------------------- 151
             GR +  ++  +G+   L +  A+++ Y                               
Sbjct: 291 EFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGH 350

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR-DFGVNPDSTTC 210
           AK  N D A  +FD MP K   AWN++IS YEQNG  + A+ LF+ M+      PD  T 
Sbjct: 351 AKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTL 410

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           +C L A AQLG ID G W+H +I    +++N  LATSL++MYA+CGN++KA E+F  +  
Sbjct: 411 ICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVER 470

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            +V  W+AMI    M+G G  A++LF  M    ++PN VTF  +L AC HAGLV EG ++
Sbjct: 471 KDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQL 530

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           F  M   YG++P ++H+VC+VD+FGRAGLL +A  F++  +   P  AVW A+LGAC  H
Sbjct: 531 FEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEK-MPIPPTAAVWGALLGACSRH 589

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
            N +L     ++LL +EP N G +V+LSNIYA AG  ++V  +R +M    +KK    S+
Sbjct: 590 GNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSS 649

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE-REYSL 509
           ++V+   + F +GD SHP + +IY  LDE+  + +  GY P+  + +   EE+   E SL
Sbjct: 650 IDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSL 709

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
             HSEKLA+AFGL+ T+    IRIVKN+R+C DCH+  K +S   +R+I++RDR RFHHF
Sbjct: 710 NVHSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHF 769

Query: 570 KRGSCSCLDYW 580
           + G CSCLDYW
Sbjct: 770 RGGKCSCLDYW 780



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 119/402 (29%), Positives = 209/402 (51%), Gaps = 38/402 (9%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           L+Q+HAH++           +KLL+   +     + YA+ +F  IP P+ + +NTLI   
Sbjct: 88  LKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGY 147

Query: 82  SKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
           + ++  T S L +  M+ S +  P+ +TF  + K+ + L +L+LG  +H  V  +   SD
Sbjct: 148 ASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSD 207

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           L +  +L+NFY  S   D+A +VF  MP K VV+WN+MI+ +   G   +A+ LF  M  
Sbjct: 208 LFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEM 267

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
             V P+  T V VL+ACA+  D++ GRW+  +I   G   +++L  ++++MY +CG ++ 
Sbjct: 268 KDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCIND 327

Query: 261 AREIFDMMSELNVIAWT-------------------------------AMISGYGMHGYG 289
           A+++F+ MSE ++++WT                               A+IS Y  +G  
Sbjct: 328 AKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKP 387

Query: 290 TEAVELFHRMR-AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             A+ LFH M+ +   +P+ VT +  L A A  G +  GH +   +++ + +        
Sbjct: 388 RVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKK-HDINLNCHLAT 446

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            ++D++ + G LN+A +    V  E+    VW+AM+GA  M+
Sbjct: 447 SLLDMYAKCGNLNKAMEVFHAV--ERKDVYVWSAMIGALAMY 486


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/567 (40%), Positives = 335/567 (59%), Gaps = 25/567 (4%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF-------LFNTLI 78
           Q H  +   G      + T L+S+ C    +  A+++F      ++F        +N L+
Sbjct: 70  QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVF-----EENFHSRKLTVCYNALV 124

Query: 79  ---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
              + NSK    ++++L +R+M    +  ++ T   +I +C     L LG ++HC     
Sbjct: 125 SGYVSNSKC---SEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKY 181

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G+DSD+ V    +  Y K  +V+ A+K+FD MP K +++WN+M+SGY QNG A   + L+
Sbjct: 182 GFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELY 241

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             M   GV+PD  T V VL++CA LG   +G  V   I   G   N  L  +LINMYARC
Sbjct: 242 RNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARC 301

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           GN++KA+ +FD M E  +++WTA+I GYGMHG+G  AV+LF  M   G+ P+   FV VL
Sbjct: 302 GNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVL 361

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
           SAC+HAGL  +G   F  M++ Y L PG EH+ CMVDL GRAG L EA   ++  +  KP
Sbjct: 362 SACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIES-MPIKP 420

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
             AVW A+LGACK+HKN +L     E ++ +EPEN G+YV+LSNIY+ A     V  +R 
Sbjct: 421 DGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRI 480

Query: 436 IMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESES 495
           +M +K LKK  G S VE+  + + F +GD++H  ++EIY+ L+EL     +    PE ++
Sbjct: 481 MMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDN 540

Query: 496 AMHELEEEEREYSLR--YHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVA 553
                EE  ++   R   HSEKLA+AFGL+ T+ G  + I+KNLR+C DCH   K +S  
Sbjct: 541 R----EESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKI 596

Query: 554 TNREIIVRDRLRFHHFKRGSCSCLDYW 580
            +R++ VRD  RFHHF+ GSCSC DYW
Sbjct: 597 VHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/334 (32%), Positives = 180/334 (53%), Gaps = 7/334 (2%)

Query: 89  DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
            +L  Y +M+     P+ +TF   +KSCA LS+  LG   H  +   G   +  VQ  L+
Sbjct: 32  QALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLI 91

Query: 149 NFYAKSNNVDVARKVFDR--MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           + Y K + VD ARKVF+      K  V +N+++SGY  N    EA+ LF  M + GV  +
Sbjct: 92  SMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVN 151

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
           S T + ++ AC    +++LG  +H   +  G D +V +    I MY +CG+V+ A+++FD
Sbjct: 152 SVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD 211

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M    +I+W AM+SGY  +G  T  +EL+  M  +GV P+ VT V VLS+CA+ G    
Sbjct: 212 EMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSV 271

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           GH V   + Q  G       +  +++++ R G L +A + V D + E+   + WTA++G 
Sbjct: 272 GHEVEFKI-QASGFTSNPFLNNALINMYARCGNLTKA-QAVFDGMPERTLVS-WTAIIGG 328

Query: 387 CKMHKNFDLGVEVAEHLL--SVEPENPGHYVMLS 418
             MH + ++ V++ + ++   +EP+      +LS
Sbjct: 329 YGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLS 362


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/486 (44%), Positives = 310/486 (63%), Gaps = 5/486 (1%)

Query: 95  RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154
           RRM+  + +     F+A+I        +   +     +F S  D ++     +V+  AK 
Sbjct: 185 RRMLGEDGNSDVICFNAMIDGYLKCGEVEAAK----ELFWSMEDKNVGSWNVMVSGMAKC 240

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
             ++ AR++F+ M +K+ ++W++MI GY + G+ KEA+ +FN+M+   + P       VL
Sbjct: 241 GMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVL 300

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
           AACA LG +D GRW+H ++       + VL T+L++MYA+CG +  A ++F+ M +  V 
Sbjct: 301 AACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVF 360

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
            W AMI G GMHG   +A+ELF +M+    RPN +T + VLSACAH+G+V EG R+F SM
Sbjct: 361 TWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSM 420

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
            + YG+ PG+EH+ C+VDL GRAGLL EA + +  +  E P+ AVW A+LGAC+ H + +
Sbjct: 421 EEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPME-PSAAVWGALLGACRKHGDVE 479

Query: 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           LG  V + LL +EP+N G Y +LSNIYA AGR D V  VR +M ++G+K   G S ++ D
Sbjct: 480 LGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFD 539

Query: 455 QKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSE 514
              + F MGD SHP    IY  L  ++ R +  G+ P +   + ++EEEE+E  L+YHSE
Sbjct: 540 GVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSE 599

Query: 515 KLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSC 574
           KLA+AFGL+ T PG TI +VKNLRMC DCHSA K IS   +REIIVRDR R+HHFK G+C
Sbjct: 600 KLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTC 659

Query: 575 SCLDYW 580
           SC D+W
Sbjct: 660 SCKDFW 665



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 130/511 (25%), Positives = 229/511 (44%), Gaps = 64/511 (12%)

Query: 16  KAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFL 73
           K+   L  L+QVHA  +  G+ +   +   L+    +  F  + +A ++F  +P+P+ F+
Sbjct: 38  KSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFV 97

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           FN +I    + N    ++  Y +M++++  P+ +T+  + K+C        G  VH HV 
Sbjct: 98  FNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVI 157

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
             G   D+H+++A +  Y     V+ AR++     +  V+ +N+MI GY + G  + A  
Sbjct: 158 KQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKE 217

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           LF  M D  V                      G W            NV     +++  A
Sbjct: 218 LFWSMEDKNV----------------------GSW------------NV-----MVSGMA 238

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +CG + +ARE+F+ M E N I+W+AMI GY   GY  EA+E+F+ M+   +RP      +
Sbjct: 239 KCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSS 298

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           VL+ACA+ G + +G  + A +         V     +VD++ + G L+ A+   + +  E
Sbjct: 299 VLAACANLGALDQGRWIHAYVNNNSNSFDAV-LGTALVDMYAKCGRLDMAWDVFEKM--E 355

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVE 431
           K     W AM+    MH   +  +E+    +  +   P    +L  + A A  G +D   
Sbjct: 356 KKEVFTWNAMICGLGMHGRAEDAIELF-FKMQKQKFRPNGITLLGVLSACAHSGMVDEGL 414

Query: 432 VVRNIM-----IQKGLKKH------VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
            + N M     I+ G++ +      +G + +  + +  ++SM     P+          L
Sbjct: 415 RIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSM--PMEPSA----AVWGAL 468

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRY 511
           +G CR+ G V   E     L E E + S RY
Sbjct: 469 LGACRKHGDVELGERVGKILLELEPQNSGRY 499



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 134/275 (48%), Gaps = 8/275 (2%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           ++S +   G I  A+ +F  +   +   ++ +I    K  +  ++L  +  M    I P 
Sbjct: 233 MVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPR 292

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            +  S+V+ +CA+L  L+ GR +H +V  +    D  +  ALV+ YAK   +D+A  VF+
Sbjct: 293 KFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFE 352

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           +M  K V  WN+MI G   +G A++AI LF  M+     P+  T + VL+ACA  G +D 
Sbjct: 353 KMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDE 412

Query: 226 G-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI-FDMMSELNVIAWTAMISGY 283
           G R  +      G++  +     ++++  R G + +A E+ + M  E +   W A++   
Sbjct: 413 GLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGAC 472

Query: 284 GMHGYGTEAVELFHRMRA--HGVRPNNVTFVAVLS 316
             HG     VEL  R+      + P N    A+LS
Sbjct: 473 RKHG----DVELGERVGKILLELEPQNSGRYALLS 503


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/567 (40%), Positives = 335/567 (59%), Gaps = 25/567 (4%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF-------LFNTLI 78
           Q H  +   G      + T L+S+ C    +  A+++F      ++F        +N L+
Sbjct: 61  QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVF-----EENFHSRKLTVCYNALV 115

Query: 79  ---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
              + NSK    +D++L +R+M    +  ++ T   +I +C     L LG ++HC     
Sbjct: 116 SGYVSNSKC---SDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKY 172

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G+DSD+ V    +  Y K  +V+ A+K+FD MP K +++WN+M+SGY QNG A   + L+
Sbjct: 173 GFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELY 232

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             M   GV+PD  T V VL++CA LG   +G  V   +   G   N  L  +LINMYARC
Sbjct: 233 RNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARC 292

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           GN++KA+ +FD M E  +++WTA+I GYGMHG+G  AV+LF  M   G+ P+   FV VL
Sbjct: 293 GNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVL 352

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
           SAC+HAGL  +G   F  M++ Y L PG EH+ CMVDL GRAG L EA   ++  +  KP
Sbjct: 353 SACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIES-MPIKP 411

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
             AVW A+LGACK+HKN +L     E ++ +EPEN G+YV+LSNIY+ A     V  +R 
Sbjct: 412 DGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRI 471

Query: 436 IMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESES 495
           +M +K LKK  G S VE+  + + F +GD++H  ++EIY+ L+EL     +    PE ++
Sbjct: 472 MMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDN 531

Query: 496 AMHELEEEEREYSLR--YHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVA 553
                EE  ++   R   HSEKLA+AFGL+ T+ G  + I+KNLR+C DCH   K +S  
Sbjct: 532 R----EESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKI 587

Query: 554 TNREIIVRDRLRFHHFKRGSCSCLDYW 580
            +R++ VRD  RFHHF+ GSCSC DYW
Sbjct: 588 VHRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/334 (32%), Positives = 180/334 (53%), Gaps = 7/334 (2%)

Query: 89  DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
            +L  Y +M+     P+ +TF   +KSCA LS+  LG   H  +   G   +  VQ  L+
Sbjct: 23  QALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLI 82

Query: 149 NFYAKSNNVDVARKVFDR--MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           + Y K + VD ARKVF+      K  V +N+++SGY  N    +A+ LF  M + GV  +
Sbjct: 83  SMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVN 142

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
           S T + ++ AC    +++LG  +H   +  G D +V +    I MY +CG+V+ A+++FD
Sbjct: 143 SVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD 202

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M    +I+W AM+SGY  +G  T  +EL+  M  +GV P+ VT V VLS+CA+ G    
Sbjct: 203 EMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSV 262

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           GH V   M Q  G       +  +++++ R G L +A + V D + E+   + WTA++G 
Sbjct: 263 GHEVEFKM-QASGFTSNPFLNNALINMYARCGNLTKA-QAVFDGMPERTLVS-WTAIIGG 319

Query: 387 CKMHKNFDLGVEVAEHLL--SVEPENPGHYVMLS 418
             MH + ++ V++ + ++   +EP+      +LS
Sbjct: 320 YGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLS 353


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/556 (40%), Positives = 343/556 (61%), Gaps = 3/556 (0%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           Q+HA+ +  G      +   L+ +      + Y   IF  +P  D   + T+I  +++  
Sbjct: 404 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG 463

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
             + +L  +R + +  I       S+++ +C+ L +++  + +H ++   G  SDL +Q 
Sbjct: 464 SHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQN 522

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
            +V+ Y +  NVD A ++F+ +  K VV+W SMIS Y  NG A EA+ LF+LM++ GV P
Sbjct: 523 GIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEP 582

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           DS + V +L+A A L  +  G+ +H F++ +G  +   LA++L++MYARCG + K+R +F
Sbjct: 583 DSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVF 642

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           + +   +++ WT+MI+ YGMHG G  A++LF RM    + P+++ FVAVL AC+H+GL+ 
Sbjct: 643 NFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMN 702

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           EG R   SM+ EY L P  EH+ C+VDL GRA  L EAY+FVK +  E P   VW A+LG
Sbjct: 703 EGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVE-PTAEVWCALLG 761

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           AC++H N +LG   A+ LL ++PENPG+YV++SN+Y+   R   VE VR  M   GLKK+
Sbjct: 762 ACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKN 821

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR-CREAGYVPESESAMHELEEEE 504
            G S +EV  K + F   DKSHP + EIY  L ++  +  +E GYV +++  +H  +EEE
Sbjct: 822 PGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEE 881

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +   L  HSE+LA+A+G++ T  G ++RI KNLR+C DCH+  K IS    RE+++RD  
Sbjct: 882 KVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDAN 941

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHFK G CSC D W
Sbjct: 942 RFHHFKGGVCSCGDVW 957



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 199/384 (51%), Gaps = 12/384 (3%)

Query: 10  AYEAILKAGPRLKPL---QQVHAHLIVA-GYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           AY ++L+     K L   QQVHAH+I +     S  + T+L+ +    G +  A+++F  
Sbjct: 80  AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 139

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           +P    F +N +I           SL  YR M VS I     TF  ++K+C  L     G
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYG 199

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK-SVVAWNSMISGYEQ 184
             VH      GY S + V  ++V  Y K N+++ AR++FDRMP+K  VV+WNSMIS Y  
Sbjct: 200 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 259

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           NG + EA+ LF  M+   + P++ T V  L AC     I  G ++H  ++     +NV +
Sbjct: 260 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFV 319

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
           A +LI MYAR G + +A  IF  M + + I+W +M+SG+  +G   EA++ +H MR  G 
Sbjct: 320 ANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ 379

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
           +P+ V  +++++A A +G    G ++ A   +  GL   ++    +VD++ +      + 
Sbjct: 380 KPDLVAVISIIAASARSGNTLHGMQIHAYAMKN-GLDSDLQVGNSLVDMYAKFC----SM 434

Query: 365 KFVKDVIGEKPAPAV--WTAMLGA 386
           K++  +  + P   V  WT ++  
Sbjct: 435 KYMDCIFDKMPDKDVVSWTTIIAG 458



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 215/420 (51%), Gaps = 36/420 (8%)

Query: 10  AYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
            +  ILKA   LK  +   +VH   I  GY     +   ++ +      +  A+++F  +
Sbjct: 182 TFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRM 241

Query: 67  PSPDSFL-FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           P  +  + +N++I   S    S ++L  +  M  ++++P+ YTF A +++C   S +  G
Sbjct: 242 PEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG 301

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
             +H  V  S Y  ++ V  AL+  YA+   +  A  +F  M D   ++WNSM+SG+ QN
Sbjct: 302 MFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQN 361

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G   EA+  ++ MRD G  PD    + ++AA A+ G+   G  +H + +  GLD ++ + 
Sbjct: 362 GLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVG 421

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
            SL++MYA+  ++     IFD M + +V++WT +I+G+  +G  + A+ELF  ++  G+ 
Sbjct: 422 NSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGID 481

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQ--EYGLLPGVEHHVC---MVDLFGRAGLL 360
            + +   ++L AC+       G ++ +S+++   Y +  G+   V    +VD++G  G +
Sbjct: 482 LDVMMISSILLACS-------GLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNV 534

Query: 361 NEAYKF-----VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE--HLLS---VEPEN 410
           + A +       KDV+        WT+M+ +C +H    L  E  E  HL+    VEP++
Sbjct: 535 DYAARMFELIEFKDVVS-------WTSMI-SCYVHNG--LANEALELFHLMKETGVEPDS 584



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 147/273 (53%), Gaps = 9/273 (3%)

Query: 98  IVSNISPSNYT----FSAVIKSCAHLSILNLGRAVHCHVFVS-GYDSDLHVQAALVNFYA 152
           + +N SPS ++    +S+V++ C     L+ G+ VH H+  S    + + +   LV  Y 
Sbjct: 66  LFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYG 125

Query: 153 KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVC 212
           K   +  A K+FD MP K++  WN+MI  Y  NG    ++ L+  MR  G+  D+ T  C
Sbjct: 126 KCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPC 185

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL- 271
           +L AC  L D   G  VH   + +G    V +A S++ MY +C +++ AR++FD M E  
Sbjct: 186 ILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKE 245

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           +V++W +MIS Y  +G   EA+ LF  M+   + PN  TFVA L AC  +  +++G  + 
Sbjct: 246 DVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIH 305

Query: 332 AS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           A+ ++  Y +   V +   ++ ++ R G + EA
Sbjct: 306 ATVLKSSYYINVFVAN--ALIAMYARFGKMGEA 336


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 346/578 (59%), Gaps = 5/578 (0%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    Y +I+ A  + K L   + +H+HL  +       +L  L+ + C  G ++ A+ +
Sbjct: 60  PTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHV 119

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  IP+ D   +  LI   ++ +   ++L     M+ +   PS +TF++ +K+       
Sbjct: 120 FDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGR 179

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            +G  +H        D D++V +AL++ YA+   +D+A +VFD +  K+ V+WN++I+G+
Sbjct: 180 GIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGF 239

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            + G  +  +  F  M+  G      T   V +A A++G ++ GRWVH  ++  G  +  
Sbjct: 240 ARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTA 299

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +A +++ MYA+ G++  AR++FD + + +++ W  M++ +  +G G EAV  F  +R +
Sbjct: 300 FVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKY 359

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G++ N +TF++VL+AC+H GLV+EG + F  M ++Y + P ++H+V  VDL GRAGLL E
Sbjct: 360 GIQLNQITFLSVLTACSHGGLVKEGKQYF-DMMKDYNVEPEIDHYVSFVDLLGRAGLLKE 418

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A  FV  +  E P  AVW A+LGAC+MHKN  +G   A+H+  ++PE+ G  V+L NIYA
Sbjct: 419 ALIFVFKMPME-PTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYA 477

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             G+ D    VR +M   G+KK    S VE++   ++F   D +HP + EIY+  +E+  
Sbjct: 478 STGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNT 537

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           R ++AGYVP ++  +  ++E+ERE  L+YHSEK+ALAF L+    G TIRI+KN+R+C D
Sbjct: 538 RIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGD 597

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CHSA +++S    REI+VRD  RFHHF  GSCSC DYW
Sbjct: 598 CHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 149/310 (48%), Gaps = 6/310 (1%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           ++   ++P+   + ++I +CA    L   RA+H H+  S    D  +  +L++ Y K   
Sbjct: 53  LLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGA 112

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           V  AR VFD +P + VV+W  +I+GY QN    EA+GL   M      P   T    L A
Sbjct: 113 VSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKA 172

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
               G   +G  +H   V   LD +V + ++L++MYARC  +  A  +FD +   N ++W
Sbjct: 173 AGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSW 232

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
            A+I+G+   G G   +  F  M+ +G    + T+ +V SA A  G +++G  V A M +
Sbjct: 233 NALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIK 292

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
               L     +  ++ ++ ++G + +A K V D + ++     W  ML A      + LG
Sbjct: 293 SGQKLTAFVANT-ILGMYAKSGSMVDARK-VFDRVDQRDL-VTWNTMLTA---FAQYGLG 346

Query: 397 VEVAEHLLSV 406
            E   H   +
Sbjct: 347 KEAVAHFEEI 356


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/634 (36%), Positives = 346/634 (54%), Gaps = 76/634 (11%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF---------ITYAQRIFFCIPSPDSF 72
           K  QQ+H  ++ +G G   S+L  LLS+               +  A+++F  +   D  
Sbjct: 167 KQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDEL 226

Query: 73  LFNTLI---IRNSKAN----------------------------FSTDSLLFYRRMIVSN 101
            + T+I   +RN + +                            F  ++L  +R+M +  
Sbjct: 227 SWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLG 286

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS----GYDSDLHVQAALVNFYAKSNNV 157
           I    +T+++V+ +CA+      G+ VH ++  +      D  L V  AL   Y K   V
Sbjct: 287 IQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKV 346

Query: 158 DVARKVFDRMPDKSVVAWNSMISGY-------------------------------EQNG 186
           D AR+VF++MP K +V+WN+++SGY                                QNG
Sbjct: 347 DEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNG 406

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
           F +E++ LFN M+  G  P        + ACA L  +  GR +H  +V  G D ++    
Sbjct: 407 FGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGN 466

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           +LI MYA+CG V  A  +F  M  L+ ++W AMI+  G HG+G +A+ELF  M    + P
Sbjct: 467 ALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILP 526

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           + +TF+ VLS C+HAGLV+EGHR F SM   YG+ PG +H+  M+DL  RAG  +EA   
Sbjct: 527 DRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDM 586

Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
           ++ +  E P P +W A+L  C++H N DLG++ AE L  + P++ G YV+LSN+YA  GR
Sbjct: 587 IETMPVE-PGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGR 645

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE 486
            D V  VR +M  KG+KK  G S +EV+ K ++F + D  HP    +Y YL+EL  + R+
Sbjct: 646 WDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRK 705

Query: 487 AGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSA 546
            GY+P+++  +H++E E++EY L  HSEKLA+ FGL++   G T+R+ KNLR+C DCH+A
Sbjct: 706 LGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNA 765

Query: 547 IKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KF+S    REI+VRD  RFHHFK G CSC +YW
Sbjct: 766 FKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 122/508 (24%), Positives = 208/508 (40%), Gaps = 121/508 (23%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC-------------- 51
           PH+P   +I +          VHAH+I +G+     +L +L+ + C              
Sbjct: 25  PHNPMSYSIART---------VHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDE 75

Query: 52  -----------------DAGFITYAQRIFFCIPSP--DSFLFNTLIIRNSKANFSTDSLL 92
                             AG    A+ IFF  P    D+  +N +I   S  N    ++ 
Sbjct: 76  IRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIE 135

Query: 93  FYRRMIVSNISPSNYTFSAVI----------KSCAHL-------------SILN--LGRA 127
            +R ++ +   P N+TF++V+          K C  +             S+LN  L   
Sbjct: 136 LFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVF 195

Query: 128 VHC----------------HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           V C                 +F    + D      ++  Y ++  +D AR+  D M +K 
Sbjct: 196 VKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKL 255

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           VVAWN+MISGY  +GF  EA+ +F  M   G+  D  T   VL+ACA  G    G+ VH 
Sbjct: 256 VVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHA 315

Query: 232 FIVGQ----GLDVNVVLATSLINMYARCGNVSKAREIFDM-------------------- 267
           +I+       LD ++ +  +L  +Y +CG V +AR++F+                     
Sbjct: 316 YILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAG 375

Query: 268 -----------MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
                      M E N++ WT MISG   +G+G E+++LF+RM++ G  P +  F   + 
Sbjct: 376 RIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAII 435

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           ACA    +  G ++ A + +  G    +     ++ ++ + G++  A+     +      
Sbjct: 436 ACAWLAALMHGRQLHAQLVR-LGFDSSLSAGNALITMYAKCGVVEAAHCLF--LTMPYLD 492

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLL 404
              W AM+ A   H +    +E+ E +L
Sbjct: 493 SVSWNAMIAALGQHGHGAQALELFELML 520


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/578 (39%), Positives = 340/578 (58%), Gaps = 5/578 (0%)

Query: 6    PHSPAYEAILK---AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
            P S  Y ++L    +   L+ + +VH H +  G      + +  + +    G I  A+ +
Sbjct: 522  PDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLL 581

Query: 63   FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
            F  +       +N +I   ++     ++L  + +M      P   TF  ++ +      L
Sbjct: 582  FDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEAL 641

Query: 123  NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
               + VH H   +G   DL V  ALV+ Y+K  NV  A++VFD M +++V  W  MI G 
Sbjct: 642  EWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGL 700

Query: 183  EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
             Q+G   +A   F  M   G+ PD+TT V +L+ACA  G ++  + VH   V  GL  ++
Sbjct: 701  AQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDL 760

Query: 243  VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
             +  +L++MYA+CG++  AR +FD M E +V +WT MI G   HG G EA++ F +M++ 
Sbjct: 761  RVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSE 820

Query: 303  GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
            G +PN  ++VAVL+AC+HAGLV EG R F SM Q+YG+ P +EH+ CMVDL GRAGLL E
Sbjct: 821  GFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEE 880

Query: 363  AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
            A  F+ ++  E P  A W A+LGAC  + N ++    A+  L ++P++   YV+LSNIYA
Sbjct: 881  AELFILNMPIE-PDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYA 939

Query: 423  LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
              G+ ++  +VR++M +KG++K  G S +EVD + + F +GD SHP + EIY  L++L+ 
Sbjct: 940  ATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIE 999

Query: 483  RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
            R +  GYVP++   +   ++E +E +L  HSEKLA+ +GLM T     IR+ KNLR+C D
Sbjct: 1000 RLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSD 1059

Query: 543  CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            CH+A KFIS  T REI+ RD  RFHHFK G CSC DYW
Sbjct: 1060 CHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 225/423 (53%), Gaps = 10/423 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH  +I +G  ++  +  KLL +    G +  A+++F  +   + +++ T+I   ++ 
Sbjct: 138 KQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEY 197

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             + D++  Y +M      P+  T+ +++K+C     L  G+ +H H+  SG+ SD+ V+
Sbjct: 198 GHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVE 257

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            ALVN Y K  +++ A+ +FD+M +++V++W  MI G    G  +EA  LF  M+  G  
Sbjct: 258 TALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFI 317

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+S T V +L A A  G ++  + VH   V  GL +++ +  +L++MYA+ G++  AR +
Sbjct: 318 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVV 377

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL- 323
           FD M+E ++ +WT MI G   HG G EA  LF +M+ +G  PN  T++++L+A A A   
Sbjct: 378 FDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTS 437

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
             E  +V     +E G +  +     ++ ++ + G +++A + V D + ++   + W AM
Sbjct: 438 ALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDA-RLVFDGMCDRDVIS-WNAM 495

Query: 384 LGACKM----HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           +G        H+ F + +++ +  L  +      Y+ L N +     ++ V  V    ++
Sbjct: 496 MGGLAQNGCGHEAFTVFLQMQQEGLVPDSTT---YLSLLNTHGSTDALEWVNEVHKHAVE 552

Query: 440 KGL 442
            GL
Sbjct: 553 TGL 555



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 216/446 (48%), Gaps = 16/446 (3%)

Query: 6   PHSPAYEAILKAGPR---LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+S  Y +IL A      L+ +++VH+H + AG      +   L+ +   +G I  A+ +
Sbjct: 318 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVV 377

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA--HLS 120
           F  +   D F +  +I   ++     ++   + +M  +   P+  T+ +++ + A    S
Sbjct: 378 FDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTS 437

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L   + VH H   +G+ SDL +  AL++ YAK  ++D AR VFD M D+ V++WN+M+ 
Sbjct: 438 ALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMG 497

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           G  QNG   EA  +F  M+  G+ PDSTT + +L        ++    VH+  V  GL  
Sbjct: 498 GLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLIS 557

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +  + ++ I+MY RCG++  AR +FD +S  +V  W AMI G      G EA+ LF +M+
Sbjct: 558 DFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQ 617

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G  P+  TF+ +LSA      ++    V  S   + GL+  +     +V  + + G +
Sbjct: 618 REGFIPDATTFINILSANVDEEALEWVKEVH-SHATDAGLVD-LRVGNALVHTYSKCGNV 675

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE----NPGHYVM 416
             A +   D++  +     WT M+G    H     G +   H L +  E    +   YV 
Sbjct: 676 KYAKQVFDDMV--ERNVTTWTMMIGGLAQH---GCGHDAFSHFLQMLREGIVPDATTYVS 730

Query: 417 LSNIYALAGRMDRVEVVRNIMIQKGL 442
           + +  A  G ++ V+ V N  +  GL
Sbjct: 731 ILSACASTGALEWVKEVHNHAVSAGL 756



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 200/392 (51%), Gaps = 8/392 (2%)

Query: 5   QPHSPAYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP+   Y +ILKA      LK  +++HAH+I +G+     + T L+++    G I  AQ 
Sbjct: 216 QPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQL 275

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF  +   +   +  +I   +      ++   + +M      P++YT+ +++ + A    
Sbjct: 276 IFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGA 335

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L   + VH H   +G   DL V  ALV+ YAKS ++D AR VFD M ++ + +W  MI G
Sbjct: 336 LEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGG 395

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL--AACAQLGDIDLGRWVHEFIVGQGLD 239
             Q+G  +EA  LF  M+  G  P+ TT + +L  +A A    ++  + VH+     G  
Sbjct: 396 LAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFI 455

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            ++ +  +LI+MYA+CG++  AR +FD M + +VI+W AM+ G   +G G EA  +F +M
Sbjct: 456 SDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQM 515

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
           +  G+ P++ T++++L+       ++  + V      E GL+         + ++ R G 
Sbjct: 516 QQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHA-VETGLISDFRVGSAFIHMYIRCGS 574

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHK 391
           +++A + + D +  +     W AM+G     +
Sbjct: 575 IDDA-RLLFDKLSVRHV-TTWNAMIGGAAQQR 604



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 167/304 (54%), Gaps = 3/304 (0%)

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
           + D++   +  +   I+  ++++  +++ C     + L + VH  +  SG + +L+V   
Sbjct: 99  AKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANK 158

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L+  Y +   +  AR+VFD++  K++  W +MI GY + G A++A+ +++ MR     P+
Sbjct: 159 LLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPN 218

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T + +L AC    ++  G+ +H  I+  G   +V + T+L+NMY +CG++  A+ IFD
Sbjct: 219 EITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFD 278

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M E NVI+WT MI G   +G G EA  LF +M+  G  PN+ T+V++L+A A AG ++ 
Sbjct: 279 KMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEW 338

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
              V  S     GL   +     +V ++ ++G +++A + V D + E+   + WT M+G 
Sbjct: 339 VKEVH-SHAVNAGLALDLRVGNALVHMYAKSGSIDDA-RVVFDGMTERDIFS-WTVMIGG 395

Query: 387 CKMH 390
              H
Sbjct: 396 LAQH 399



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 136/259 (52%), Gaps = 10/259 (3%)

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
           AK+A+ +  +    G+  DS + V +L  C +  DI L + VH  I+  G++ N+ +A  
Sbjct: 99  AKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANK 158

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L+ +Y RCG +  AR++FD + + N+  WT MI GY  +G+  +A+ ++ +MR    +PN
Sbjct: 159 LLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPN 218

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            +T++++L AC     ++ G ++ A + Q  G    V     +V+++ + G + +A + +
Sbjct: 219 EITYLSILKACCCPVNLKWGKKIHAHIIQS-GFQSDVRVETALVNMYVKCGSIEDA-QLI 276

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE----NPGHYVMLSNIYAL 423
            D + E+   + WT M+G      ++  G E     L ++ E    N   YV + N  A 
Sbjct: 277 FDKMVERNVIS-WTVMIGGL---AHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANAS 332

Query: 424 AGRMDRVEVVRNIMIQKGL 442
           AG ++ V+ V +  +  GL
Sbjct: 333 AGALEWVKEVHSHAVNAGL 351


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/542 (40%), Positives = 340/542 (62%), Gaps = 10/542 (1%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T LL++    G +  A+ +F  +   +  ++ ++I    K +   ++LL Y++M     S
Sbjct: 118 TTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFS 177

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA----ALVNFYAKSNNVDV 159
           P   T + ++ +CA L  L +G  +H H+     + D+ + A    ALVN YAK  ++  
Sbjct: 178 PDEVTMATLVSACAELKDLGVGMKLHSHI----REMDMKICAVLGSALVNMYAKCGDLKT 233

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACA 218
           AR+VFD++ DK V AW+++I GY +N  + EA+ LF  +     + P+  T + V++ACA
Sbjct: 234 ARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACA 293

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
           QLGD++ GRWVH++I       +V L  SLI+M+++CG++  A+ IFD MS  ++I+W +
Sbjct: 294 QLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNS 353

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           M++G  +HG G EA+  FH M+   ++P+ +TF+ VL+AC+HAGLVQEG ++F  +   Y
Sbjct: 354 MVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALY 413

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
           G+    EH+ CMVDL  RAGLL EA +F++ V+  +P  A+W +MLGAC+++ N +LG E
Sbjct: 414 GVRLKSEHYGCMVDLLCRAGLLAEAREFIR-VMPLQPDGAIWGSMLGACRVYNNLELGEE 472

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458
            A  LL +EP N G Y++LSNIYA     + V+ VR +M +KG++K  G S+V +D   +
Sbjct: 473 AARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAH 532

Query: 459 LFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLAL 518
            F  GD SHP   EI   L ++  + +  GYV ++   +  +++ ++E S+  HSEKLAL
Sbjct: 533 SFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLAL 592

Query: 519 AFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLD 578
            +GL+++  G  I I+KNLR+C DCH+ IK +S    R+I +RDR RFHHFK GSCSC D
Sbjct: 593 CYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRD 652

Query: 579 YW 580
           YW
Sbjct: 653 YW 654



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 200/365 (54%), Gaps = 9/365 (2%)

Query: 31  LIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFST 88
           ++V G+   +  L KL++ V   G   + YA  +F      D   +N+++     +N   
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPR 60

Query: 89  DSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL 147
            +L  Y  M+  S   P  +TF +++K CA L    +G+ +H  V      SDL+++  L
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
           +N YA   ++  AR +F+RM  ++ V W SMISGY +N    EA+ L+  M + G +PD 
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
            T   +++ACA+L D+ +G  +H  I    + +  VL ++L+NMYA+CG++  AR++FD 
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQ 240

Query: 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMR-AHGVRPNNVTFVAVLSACAHAGLVQE 326
           +S+ +V AW+A+I GY  +   TEA++LF  +     +RPN VT +AV+SACA  G ++ 
Sbjct: 241 LSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLET 300

Query: 327 GHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           G  V   + R + G    V  +  ++D+F + G ++ A K + D +  K   + W +M+ 
Sbjct: 301 GRWVHDYITRTQKG--HSVSLNNSLIDMFSKCGDIDAA-KRIFDSMSYKDLIS-WNSMVN 356

Query: 386 ACKMH 390
              +H
Sbjct: 357 GLALH 361


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/561 (38%), Positives = 335/561 (59%), Gaps = 3/561 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           ++  +QVHA ++        S L    +L  D G + YA  IF  I  P +F FNT+I  
Sbjct: 1   MEEFKQVHAQVLKWENSFCASNLVATCAL-SDWGSMDYACSIFRQIDQPGTFEFNTMIRG 59

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
                   ++L  Y  M+   +   N+T+ A+ K+CA L  +  G  +H ++F  G + D
Sbjct: 60  YVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGD 119

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM-R 199
           L VQ +L+N Y K   ++++  VF+ M  + V +W+++I+ +   G   E + +F  M R
Sbjct: 120 LFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSR 179

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
           +    P+ +  V VL+AC  LG +DLGR  H  ++    ++NV++ TSLI+MY +CG + 
Sbjct: 180 EGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIE 239

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           K   +F  M + N ++++ MI+G  MHG G EA+++F  M   G++P++V ++ VLSAC 
Sbjct: 240 KGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACN 299

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           HAGLV EG + F  M+ E+G+ P ++H+ C+V L GRAG+LN+A + ++  +  KP   V
Sbjct: 300 HAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRS-MPIKPNEVV 358

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W  +L ACK H N ++G   A+ L  +   NPG YV+LSN+YA A R + V  +R  M +
Sbjct: 359 WRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMAR 418

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           KG  +  G+S V+V++K Y F   D SHP    +Y+ + ++  + +  GY P++   + +
Sbjct: 419 KGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFD 478

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           ++EEE+   L+ HS+KLA+AF L+ TS G  IRI +NLRMC DCH+  K ISV   REI 
Sbjct: 479 VDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREIT 538

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           VRDR RFHHFK G+CSC DYW
Sbjct: 539 VRDRNRFHHFKDGTCSCRDYW 559


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/627 (37%), Positives = 350/627 (55%), Gaps = 68/627 (10%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLL--SLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           LK L+QVHA++   G      +  KLL  S V     + YA+R+F   P+PD F+ NTLI
Sbjct: 18  LKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLI 77

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISP-SNYTFSAVIKSCAHLSILNLGRAVHC------- 130
              ++++   +SL+ +  M     +P  +++F+ ++K+ A    L  G  +HC       
Sbjct: 78  RGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGL 137

Query: 131 --HVFVSGYDSDLHVQAALVNF-------------------------------------- 150
             H+FV      ++ +   V F                                      
Sbjct: 138 DTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNR 197

Query: 151 ---------------YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
                          Y K+  +++ARK+F  MP K  V+W++MI G+  NGF  EA G F
Sbjct: 198 MPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFF 257

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             ++  G+ P+  +    L+ACA  G I+ G+ +H FI   G    V +  +L++ Y++C
Sbjct: 258 RELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKC 317

Query: 256 GNVSKAREIFDMMSE-LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           GNV  AR +F+ M E  ++++WT+MI+G  MHGYG EA++LFH M   G+RP+ + F+++
Sbjct: 318 GNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISI 377

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L AC+HAGL+++G+  F  M+  Y + P +EH+ CMVDL+GRAG L++AY+F+   +   
Sbjct: 378 LYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIH-MPVL 436

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P   +W  +LGAC +H N  L   V E L  ++P N G +V+LSNIYA+AG+   V  VR
Sbjct: 437 PTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVR 496

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR-EAGYVPES 493
             M  + + K  G+S +EVD+  Y F  G+  +  T E Y+ L E+M + R E  Y+PE 
Sbjct: 497 RSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEV 556

Query: 494 ESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVA 553
            S +H++E+EE+E S+  HSEKLA+AFG+ R   G  IRIVKNLR+C DCH+ +K IS  
Sbjct: 557 GSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKV 616

Query: 554 TNREIIVRDRLRFHHFKRGSCSCLDYW 580
              EI+VRDR RFH FK GSCSC DYW
Sbjct: 617 YGLEIVVRDRSRFHSFKTGSCSCRDYW 643


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/598 (37%), Positives = 345/598 (57%), Gaps = 31/598 (5%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
           ++L+    +  +  +HA LI  G+ +   M+ +LL        I YA RIF    +P+ +
Sbjct: 54  SLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVY 113

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
           L+  LI     +    D++  Y RM+  +I P NY  ++++K+C     L  GR VH   
Sbjct: 114 LYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRA 173

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD----------------------- 169
              G  S+  V+  ++  Y K   +  AR+VF+ MP+                       
Sbjct: 174 LKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGA 233

Query: 170 -------KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
                  K  V W +MI G+ +N     A+  F  M+   V P+  T VCVL+AC+QLG 
Sbjct: 234 VFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGA 293

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           +++GRWVH ++    +++N+ +  +LINMY+RCG++ +A+ +FD M + +VI +  MISG
Sbjct: 294 LEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISG 353

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
             M+G   +A+ELF  M    +RP NVTFV VL+AC+H GLV  G ++F SM ++YG+ P
Sbjct: 354 LSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEP 413

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
            +EH+ CMVDL GR G L EAY  ++  +   P   +   +L ACKMHKN +LG +VA+ 
Sbjct: 414 QIEHYGCMVDLLGRVGRLEEAYDLIR-TMKMTPDHIMLGTLLSACKMHKNLELGEQVAKV 472

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
           L      + G YV+LS++YA +G+      VR  M + G++K  G S++EV+ + + F +
Sbjct: 473 LEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLL 532

Query: 463 GDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGL 522
           GD  HP    IY+ L+EL    R  GY PE E  + ++E+ E+E++L  HSE+LA+ +GL
Sbjct: 533 GDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGL 592

Query: 523 MRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           + T P   IR++KNLR+C DCHSAIK I+  T R+++VRDR RFH+F+ G+CSC DYW
Sbjct: 593 ISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/514 (42%), Positives = 318/514 (61%), Gaps = 7/514 (1%)

Query: 70   DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
            D F  NT++   + +     +L  +RR +     P  +T+  +I++CA L  L  G  +H
Sbjct: 771  DPFPLNTVLRIAAGSPRPRVALELHRRRLAL---PDTHTYPPLIQACARLLALREGECLH 827

Query: 130  CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNSMISGYEQNGF 187
                 +G+ + + VQ +LV+ Y      + A KVFD MP   +++V+WNSM++ +  NG 
Sbjct: 828  AEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGR 887

Query: 188  AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
              E + +F  M      PD  T V VL ACA+ G + LGR VH ++   GL  N  ++ +
Sbjct: 888  PNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNA 947

Query: 248  LINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
            LI++YA+CG+V+ AR IF+ M     V++WT++I G   +G+G EA+ELF  M    + P
Sbjct: 948  LIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVP 1007

Query: 307  NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
              +T V VL AC+H GLV +G R F  M+++YG+ P +EH  CMVDL GRAG + EAY +
Sbjct: 1008 TEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDY 1067

Query: 367  VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
            +  +  E P   VW  +LG+C MHK  +LG    E L+ ++P + G YV+LSN+YA  G 
Sbjct: 1068 IITMPLE-PNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGM 1126

Query: 427  MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE 486
               V V+R  M++  ++K+ G+S VE+    Y F MGD+SHP + +IY+ L E+  R R 
Sbjct: 1127 WADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRR 1186

Query: 487  AGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSA 546
             GY+P + + + ++EEEE+E +L YHSE+LA+AF L+++ PG+ IRI+KNLRMC DCH A
Sbjct: 1187 EGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVA 1246

Query: 547  IKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
               IS   +REIIVRDR RFHHF+ G+CSC DYW
Sbjct: 1247 FNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/586 (36%), Positives = 350/586 (59%), Gaps = 32/586 (5%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI------- 78
           QVH H++  G+     + + L+ +    G +  A++ F  +P  +  ++NTLI       
Sbjct: 163 QVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCS 222

Query: 79  -IRNSKANF-----------------------STDSLLFYRRMIVSNISPSNYTFSAVIK 114
            I +S+  F                         +++  +R M + N+    YTF +V+ 
Sbjct: 223 RIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLT 282

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           +C  +  L  G+ VH ++  + Y  ++ V +ALV+ Y K  ++  A  VF +M  K+VV+
Sbjct: 283 ACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVS 342

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           W +M+ GY QNG+++EA+ +F  M++ G+ PD  T   V+++CA L  ++ G   H   +
Sbjct: 343 WTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRAL 402

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             GL   + ++ +L+ +Y +CG++  +  +F  MS ++ ++WTA++SGY   G   E + 
Sbjct: 403 VSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLR 462

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
           LF  M AHG +P+ VTF+ VLSAC+ AGLVQ+G+++F SM +E+ ++P  +H+ CM+DLF
Sbjct: 463 LFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLF 522

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            RAG L EA KF+ + +   P    W ++L +C+ H+N ++G   AE LL +EP N   Y
Sbjct: 523 SRAGRLEEARKFI-NKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASY 581

Query: 415 VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIY 474
           ++LS+IYA  G+ + V  +R  M  KGL+K  G S ++   + ++FS  D+S+P +++IY
Sbjct: 582 ILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIY 641

Query: 475 QYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIV 534
             L++L  +  + GYVP+  S +H++++ E+   L +HSEKLA+AFGL+   PG+ IR+V
Sbjct: 642 SELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVV 701

Query: 535 KNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KNLR+C DCH+A K+IS  T REI+VRD  RFH FK G CSC D+W
Sbjct: 702 KNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCGDFW 747



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/519 (25%), Positives = 225/519 (43%), Gaps = 109/519 (21%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           +  +++H H+I A       +L  L+S       ITYA+R+F  +P  + + +NTL+   
Sbjct: 26  RDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSY 85

Query: 82  SKA-------------------------------NFSTDSLLFYRRMI------VSNISP 104
           SK                                 F   S+  Y  M+      ++ I+ 
Sbjct: 86  SKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIAL 145

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           S     A  + C HL     G  VH HV   G+ S + V + LV+ Y+K+  V  AR+ F
Sbjct: 146 STMLILASKQGCVHL-----GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAF 200

Query: 165 DRMPDKSVV-------------------------------AWNSMISGYEQNGFAKEAIG 193
           D MP+K+VV                               +W +MI+G+ QNG  +EAI 
Sbjct: 201 DEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAID 260

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           LF  MR   +  D  T   VL AC  +  +  G+ VH +I+      N+ + ++L++MY 
Sbjct: 261 LFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYC 320

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +C ++  A  +F  M+  NV++WTAM+ GYG +GY  EAV++F  M+ +G+ P++ T  +
Sbjct: 321 KCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGS 380

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI-- 371
           V+S+CA+   ++EG + F       GL+  +     +V L+G+ G + ++++   ++   
Sbjct: 381 VISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYV 439

Query: 372 -------------------------------GEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
                                          G KP    +  +L AC        G ++ 
Sbjct: 440 DEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIF 499

Query: 401 EHLLSVEPENP--GHYVMLSNIYALAGRMDRVEVVRNIM 437
           E ++      P   HY  + ++++ AGR++      N M
Sbjct: 500 ESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKM 538



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 158/322 (49%), Gaps = 9/322 (2%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+  +QVHA++I   Y  +  + + L+ + C    I  A+ +F  +   +   +  +++ 
Sbjct: 290 LQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVG 349

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
             +  +S +++  +  M  + I P ++T  +VI SCA+L+ L  G   HC   VSG  S 
Sbjct: 350 YGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISF 409

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           + V  ALV  Y K  +++ + ++F  M     V+W +++SGY Q G A E + LF  M  
Sbjct: 410 ITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLA 469

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV-LATSLINMYARCGNVS 259
            G  PD  T + VL+AC++ G +  G  + E ++ +   + +    T +I++++R G + 
Sbjct: 470 HGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLE 529

Query: 260 KAREIFDMMS-ELNVIAWTAMISGYGMH---GYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           +AR+  + M    + I W +++S    H     G  A E   ++  H    N  +++ + 
Sbjct: 530 EARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPH----NTASYILLS 585

Query: 316 SACAHAGLVQEGHRVFASMRQE 337
           S  A  G  +E   +   MR +
Sbjct: 586 SIYAAKGKWEEVANLRKGMRDK 607


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/517 (42%), Positives = 326/517 (63%), Gaps = 7/517 (1%)

Query: 70  DSFLFNTLIIRNSKANFSTDSL---LFYRRMIVSNISPSNYTFSAVIKSCAHL-SILNLG 125
           D+FL NTLI  ++ +   +  L    F+  M+ S + P+ +TF  ++K+CA L     +G
Sbjct: 92  DAFLVNTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVG 151

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYA--KSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
              H      G+ +D +V   L++ Y+      +  AR VFDRM   SVV W++MI GY 
Sbjct: 152 LQAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYV 211

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           + G + +A+GLF  M+  GV PD  T + VLAA A LG ++L RWV  F+  +G+  +V 
Sbjct: 212 RGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVT 271

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           L  +LI+  A+CG+V  A  +F  M E  V++WT++I    M G G EAV +F  M+  G
Sbjct: 272 LCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAG 331

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           VRP++V F+ VL+AC+HAG+V EG+  F SM+ EYG+ P +EH+ CMVD+FGRAG++  A
Sbjct: 332 VRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERA 391

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
            +F+   +  KP P +W  ++ AC+ H   +LG  +  +LL+  P +  +YVMLSN+YAL
Sbjct: 392 MEFIH-TMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHEANYVMLSNVYAL 450

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
             R      +R  M ++G+KK  G S VE+D + + F  GD+SHP   EIY  ++E+   
Sbjct: 451 TQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARE 510

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
            +  G++  +   + +L+EE++E +L++HSEKLA+AF L+RT PG  +R+VKNLR+C DC
Sbjct: 511 LKHVGHISATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDC 570

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           H+AIK IS+  NREIIVRDR RFH FK GSCSC D+W
Sbjct: 571 HAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 607



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 4/266 (1%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLV-CDAG-FITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           Q HA  +  G+   + +   L+ +  C  G F+  A+ +F  +       ++ +I    +
Sbjct: 153 QAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVR 212

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
              S+D++  +R M  S + P   T   V+ + A L  L L R V   V   G    + +
Sbjct: 213 GGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTL 272

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             AL++  AK  +VD A  VF  M +++VV+W S+I      G  KEA+ +F  M+  GV
Sbjct: 273 CNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGV 332

Query: 204 NPDSTTCVCVLAACAQLGDIDLGR-WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
            PD    + VL AC+  G +D G  +     +  G+D  +     +++M+ R G V +A 
Sbjct: 333 RPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAM 392

Query: 263 E-IFDMMSELNVIAWTAMISGYGMHG 287
           E I  M  + N I W  +++    HG
Sbjct: 393 EFIHTMPMKPNPIIWRTLVAACRAHG 418


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/556 (40%), Positives = 327/556 (58%), Gaps = 1/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H+ LI             L+ +      +  A+R +  +P  D   +N LI   S+ 
Sbjct: 304 RQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQC 363

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               D++  + +M   +I  +  T S V+KS A L  + + + +H     SG  SD +V 
Sbjct: 364 GDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVI 423

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            +L++ Y K N++D A K+F+    + +VA+ SMI+ Y Q G  +EA+ L+  M+D  + 
Sbjct: 424 NSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIK 483

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD   C  +L ACA L   + G+ +H   +  G   ++  + SL+NMYA+CG++  A   
Sbjct: 484 PDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRA 543

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  +    +++W+AMI GY  HG+G EA+ LF++M   GV PN++T V+VL AC HAGLV
Sbjct: 544 FSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLV 603

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG + F  M   +G+ P  EH+ CM+DL GR+G LNEA + V  +  E     VW A+L
Sbjct: 604 NEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADG-FVWGALL 662

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GA ++HKN +LG + A+ L  +EPE  G +V+L+NIYA AG  + V  VR  M    +KK
Sbjct: 663 GAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKK 722

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S +E+  K Y F +GD+SH  ++EIY  LD+L     +AGY    E  +H +++ E
Sbjct: 723 EPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSE 782

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E  L +HSEKLA+AFGL+ T PG  IR+ KNLR+CVDCH+  KF+    +REIIVRD  
Sbjct: 783 KEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDIN 842

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHFK GSCSC DYW
Sbjct: 843 RFHHFKDGSCSCGDYW 858



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 196/362 (54%), Gaps = 9/362 (2%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           ++HAHLI  G+ R  S+   L++L        YA+++       D   +++L+    +  
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
           F  ++LL +  M +  +  + +TF +V+K+C+    LN+GR VH    V+G++SD  V  
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
            LV  YAK   +D +R++F  + +++VV+WN++ S Y Q+    EA+GLF  M   G+ P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           +  +   +L ACA L + DLGR +H  ++  GLD++   A +L++MY++ G +  A  +F
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVF 241

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
             ++  +V++W A+I+G  +H     A+ L   M+  G RPN  T  + L ACA  G  +
Sbjct: 242 QDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKE 301

Query: 326 EGHRVFAS---MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
            G ++ +S   M     L   V     +VD++ +  ++++A +   D + +K   A W A
Sbjct: 302 LGRQLHSSLIKMDAHSDLFAAVG----LVDMYSKCEMMDDARR-AYDSMPKKDIIA-WNA 355

Query: 383 ML 384
           ++
Sbjct: 356 LI 357



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 203/400 (50%), Gaps = 8/400 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H  ++  G    +     L+ +   AG I  A  +F  I  PD   +N +I      
Sbjct: 203 RKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLH 262

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           + +  +L+    M  S   P+ +T S+ +K+CA +    LGR +H  +      SDL   
Sbjct: 263 DCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAA 322

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             LV+ Y+K   +D AR+ +D MP K ++AWN++ISGY Q G   +A+ LF+ M    ++
Sbjct: 323 VGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDID 382

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            + TT   VL + A L  I + + +H   +  G+  +  +  SL++ Y +C ++ +A +I
Sbjct: 383 FNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKI 442

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+  +  +++A+T+MI+ Y  +G G EA++L+ +M+   ++P+     ++L+ACA+    
Sbjct: 443 FEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAY 502

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTA 382
           ++G ++     + +G +  +     +V+++ + G + +A +       E P   +  W+A
Sbjct: 503 EQGKQLHVHAIK-FGFMCDIFASNSLVNMYAKCGSIEDADR----AFSEIPNRGIVSWSA 557

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           M+G    H +    + +   +L  +   P H  ++S + A
Sbjct: 558 MIGGYAQHGHGKEALRLFNQMLR-DGVPPNHITLVSVLCA 596



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 187/380 (49%), Gaps = 6/380 (1%)

Query: 10  AYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
            + ++LKA    + L   ++VH   +V G+     +   L+ +    G +  ++R+F  I
Sbjct: 84  TFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGI 143

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
              +   +N L     ++    +++  ++ M+ S I P+ ++ S ++ +CA L   +LGR
Sbjct: 144 VERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGR 203

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H  +   G D D     ALV+ Y+K+  ++ A  VF  +    VV+WN++I+G   + 
Sbjct: 204 KIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHD 263

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
               A+ L + M+  G  P+  T    L ACA +G  +LGR +H  ++      ++  A 
Sbjct: 264 CNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAV 323

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
            L++MY++C  +  AR  +D M + ++IAW A+ISGY   G   +AV LF +M +  +  
Sbjct: 324 GLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDF 383

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           N  T   VL + A    ++   ++  ++  + G+         ++D +G+   ++EA K 
Sbjct: 384 NQTTLSTVLKSVASLQAIKVCKQIH-TISIKSGIYSDFYVINSLLDTYGKCNHIDEASKI 442

Query: 367 VKDVIGEKPAPAVWTAMLGA 386
            ++   E      +T+M+ A
Sbjct: 443 FEERTWED--LVAYTSMITA 460


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/583 (38%), Positives = 349/583 (59%), Gaps = 4/583 (0%)

Query: 1    MKNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
            M+  +P+   Y +IL+    L+ +   +Q+H  ++  G+  +  + + L+ +    G + 
Sbjct: 466  MEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLD 525

Query: 58   YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            +A +IF  +   D   +  +I   ++     ++L  ++ M    I   N  F++ I +CA
Sbjct: 526  HALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACA 585

Query: 118  HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
             +  LN G+ +H    VSGY  DL V  ALV+ YA+   V  A   FD++  K  ++WNS
Sbjct: 586  GIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNS 645

Query: 178  MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
            +ISG+ Q+G  +EA+ LF+ M   G   +S T    ++A A + ++ LG+ +H  I+  G
Sbjct: 646  LISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTG 705

Query: 238  LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
             D    ++  LI +YA+CGN+  A   F  M E N I+W AM++GY  HG+G +A+ LF 
Sbjct: 706  HDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFE 765

Query: 298  RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
             M+  GV PN+VTFV VLSAC+H GLV EG + F SMR+ +GL+P  EH+ C+VDL GR+
Sbjct: 766  DMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRS 825

Query: 358  GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
            GLL+ A +FV++ +  +P   V   +L AC +HKN D+G   A HLL +EP++   YV+L
Sbjct: 826  GLLSRARRFVEE-MPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLL 884

Query: 418  SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL 477
            SN+YA+ G+    +  R +M  +G+KK  G S +EV+   + F  GD+ HPN ++IY+YL
Sbjct: 885  SNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYL 944

Query: 478  DELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNL 537
             +L     E GY+P++ S +++ E  ++  +   HSEKLA+AFGL+  S    I + KNL
Sbjct: 945  RDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNL 1004

Query: 538  RMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            R+C DCH+ IK++S  ++R I+VRD  RFHHFK G CSC DYW
Sbjct: 1005 RVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 200/393 (50%), Gaps = 7/393 (1%)

Query: 5   QPHSPAYEAILKA-GPRLKP---LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           +P    Y  +L+  G    P   ++++HA  I  GY  S  +   L+ L    GF+  A+
Sbjct: 166 KPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAK 225

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           ++F  +   DS  +  ++   S++    +++L + +M  S + P+ Y FS+V+ +C  + 
Sbjct: 226 KVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVE 285

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
              +G  +H  V   G+  + +V  ALV  Y++  N   A +VF+ M  +  V++NS+IS
Sbjct: 286 FYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLIS 345

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           G  Q G++ +A+ LF  M    + PD  T   +L+AC+ +G + +G+  H + +  G+  
Sbjct: 346 GLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSS 405

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +++L  +L+++Y +C ++  A E F      NV+ W  M+  YG+     E+ ++F +M+
Sbjct: 406 DIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQ 465

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G+ PN  T+ ++L  C+    V  G ++   + +  G    V     ++D++ + G L
Sbjct: 466 MEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKLGKL 524

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
           + A K  +  + EK   + WTAM+     H+ F
Sbjct: 525 DHALKIFRR-LKEKDVVS-WTAMIAGYAQHEKF 555



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 195/382 (51%), Gaps = 6/382 (1%)

Query: 6   PHSPAYEAILKAGPRL---KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    + ++L A  ++   K  +Q+H  ++  G+     +   L++L    G    A+++
Sbjct: 269 PTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQV 328

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   D   +N+LI   S+  +S  +L  +++M +  + P   T ++++ +C+ +  L
Sbjct: 329 FNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGAL 388

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            +G+  H +   +G  SD+ ++ AL++ Y K +++  A + F     ++VV WN M+  Y
Sbjct: 389 LVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAY 448

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
                  E+  +F  M+  G+ P+  T   +L  C+ L  +DLG  +H  ++  G   NV
Sbjct: 449 GLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNV 508

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +++ LI+MYA+ G +  A +IF  + E +V++WTAMI+GY  H    EA+ LF  M+  
Sbjct: 509 YVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQ 568

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+  +N+ F + +SACA    + +G ++ A      G    +     +V L+ R G + +
Sbjct: 569 GIHSDNIGFASAISACAGIQALNQGQQIHAQACVS-GYSDDLSVGNALVSLYARCGKVRD 627

Query: 363 AYKFVKDVIGEKPAPAVWTAML 384
           AY F  D I  K   + W +++
Sbjct: 628 AY-FAFDKIFSKDNIS-WNSLI 647



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 205/439 (46%), Gaps = 34/439 (7%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q H++ I AG      +   LL L      I  A   F    + +  L+N +++     
Sbjct: 392 KQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLL 451

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           +   +S   + +M +  I P+ +T+ +++++C+ L  ++LG  +H  V  +G+  +++V 
Sbjct: 452 DNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVS 511

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           + L++ YAK   +D A K+F R+ +K VV+W +MI+GY Q+    EA+ LF  M+D G++
Sbjct: 512 SVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIH 571

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            D+      ++ACA +  ++ G+ +H      G   ++ +  +L+++YARCG V  A   
Sbjct: 572 SDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFA 631

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF-----------VA 313
           FD +   + I+W ++ISG+   G+  EA+ LF +M   G   N+ TF             
Sbjct: 632 FDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANV 691

Query: 314 VLSACAHAGLVQEGH-------RVFASMRQEYGLLPGVEHHV------------CMVDLF 354
            L    HA +++ GH        V  ++  + G +   E                M+  +
Sbjct: 692 KLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGY 751

Query: 355 GRAGLLNEAYKFVKDV--IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP--EN 410
            + G   +A    +D+  +G  P    +  +L AC      D G++  + +  V      
Sbjct: 752 SQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPK 811

Query: 411 PGHYVMLSNIYALAGRMDR 429
           P HY  + ++   +G + R
Sbjct: 812 PEHYACVVDLLGRSGLLSR 830



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 209/432 (48%), Gaps = 7/432 (1%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           ++H  ++  G+     +  +L+ L    G +  A  +F  +P      +N ++ R     
Sbjct: 89  KLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGK 148

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI-LNLGRAVHCHVFVSGYDSDLHVQ 144
            +   L  +RRM+   + P   T++ V++ C    +  +    +H      GY++ L V 
Sbjct: 149 MAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVC 208

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             L++ Y K+  ++ A+KVFD +  +  V+W +M+SG  Q+G  +EA+ LF  M   GV 
Sbjct: 209 NPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVY 268

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P       VL+AC ++    +G  +H  ++ QG  +   +  +L+ +Y+R GN   A ++
Sbjct: 269 PTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQV 328

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ M + + +++ ++ISG    GY  +A+ELF +M    ++P+ VT  ++LSAC+  G +
Sbjct: 329 FNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGAL 388

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
             G + F S   + G+   +     ++DL+ +   +  A++F      E     +W  ML
Sbjct: 389 LVGKQ-FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLST--ETENVVLWNVML 445

Query: 385 GACKMHKNFDLGVEVAEHLL--SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
            A  +  N +   ++   +    +EP    +  +L    +L   +D  E +   +++ G 
Sbjct: 446 VAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRA-VDLGEQIHTQVLKTGF 504

Query: 443 KKHVGYSTVEVD 454
           + +V  S+V +D
Sbjct: 505 QFNVYVSSVLID 516



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 147/325 (45%), Gaps = 30/325 (9%)

Query: 72  FLFNTLIIRNSKANFS-------TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
           F F   +  N+  +++        + + F   M    +  ++ T+  ++  C      + 
Sbjct: 27  FFFQKFLEHNTALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSD 86

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G  +H  +   G+ +++ +   L++ Y    ++D A  VFD MP + +  WN ++  +  
Sbjct: 87  GWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVA 146

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG--RWVHEFIVGQGLDVNV 242
              A   +GLF  M    V PD  T   VL  C   GD+       +H   +  G + ++
Sbjct: 147 GKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGG-GDVPFHCVEKIHARTITHGYENSL 205

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +   LI++Y + G ++ A+++FD + + + ++W AM+SG    G   EAV LF +M   
Sbjct: 206 FVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTS 265

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVC--MVDLFGRAGL 359
           GV P    F +VLSAC      + G ++    ++Q + L    E +VC  +V L+ R G 
Sbjct: 266 GVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSL----ETYVCNALVTLYSRLG- 320

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAML 384
                 F+       PA  V+ AML
Sbjct: 321 -----NFI-------PAEQVFNAML 333


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/522 (39%), Positives = 323/522 (61%), Gaps = 10/522 (1%)

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           ++IF  +P  D   +NT+I  N++     ++L   R M  +N+ P ++T S+V+   A  
Sbjct: 193 RKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAEN 252

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             ++ G+ +H      G D+D++V ++L++ YAK   V  + +VF  + ++  ++WNS+I
Sbjct: 253 VDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           +G  QNG   E +  F  M    + P S +   ++ ACA L  + LG+ +H +I   G D
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 372

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            N+ +A+SL++MYA+CGN+  A++IFD M   ++++WTAMI G  +HG   +A+ELF +M
Sbjct: 373 ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM 432

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
              G++       AVL+AC+H GLV E  + F SM +++G+ PGVEH+  + DL GRAG 
Sbjct: 433 ETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGR 485

Query: 360 LNEAYKFVKDV-IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           L EAY F+  + IG  P  ++W  +L AC++HKN D+  +VA  +L V+P N G Y++L+
Sbjct: 486 LEEAYDFICGMHIG--PTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLA 543

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           NIY+ A R       R  M + G++K    S +EV  K Y F  GD+SHP   +I + ++
Sbjct: 544 NIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAME 603

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
            L+    + GYVP++    H++EEE+++Y +  HSE+LA+ FG++ T  GMTIR+ KNLR
Sbjct: 604 VLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLR 663

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+A KFIS    REI+VRD  RFHHFK G+CSC DYW
Sbjct: 664 VCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 187/380 (49%), Gaps = 45/380 (11%)

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           R+F  I  P +  + ++I   +       SL  +  M+ S + P +  F +V+KSCA L 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN------------------------- 155
            LNLG ++H ++   G D DL+   AL+N Y+K                           
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 156 -------NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
                  + D  RK+F+ MP+K +V+WN++I+G  +NG  +E + +   M    + PDS 
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           T   VL   A+  DI  G+ +H   + QGLD ++ +A+SLI+MYA+C  V+ +  +F ++
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
           +E + I+W ++I+G   +G   E +  F +M    ++P + +F +++ ACAH   +  G 
Sbjct: 301 TERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGK 360

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEKPAPAVWTAM 383
           ++   + +  G    +     +VD++ + G +  A +      ++D++        WTAM
Sbjct: 361 QLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-------WTAM 412

Query: 384 LGACKMHKNFDLGVEVAEHL 403
           +  C +H      +E+ E +
Sbjct: 413 IMGCALHGQAPDAIELFEQM 432



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 182/383 (47%), Gaps = 45/383 (11%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H   I  G      + + L+ +      +  + R+F  +   D   +N++I    + 
Sbjct: 259 KEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQN 318

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               + L F+R+M+++ I P +Y+FS+++ +CAHL+ L+LG+ +H ++  +G+D ++ + 
Sbjct: 319 GLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIA 378

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ++LV+ YAK  N+  A+++FDRM  + +V+W +MI G   +G A +AI LF  M   G+ 
Sbjct: 379 SSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK 438

Query: 205 PDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
                   VL AC+  G +D   ++ +      G+   V    ++ ++  R G + +A  
Sbjct: 439 -------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEA-- 489

Query: 264 IFDMMSELNV----IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV-TFVAVLSAC 318
            +D +  +++      W  ++S   +H     A ++ +R+    V PNN   ++ + +  
Sbjct: 490 -YDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILE--VDPNNTGAYILLANIY 546

Query: 319 AHAGLVQEGHRVFASMR-----------------QEYGLLPGVEHHVC----------MV 351
           + A   +E  +  ASMR                 + Y  + G E H C          +V
Sbjct: 547 SAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLV 606

Query: 352 DLFGRAGLLNEAYKFVKDVIGEK 374
           +L  + G + +  +   DV  E+
Sbjct: 607 ELMEKEGYVPDTSEVHHDVEEEQ 629



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 136/296 (45%), Gaps = 39/296 (13%)

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            Y+  N +  + ++F+ +     +AW S+I  Y  +G   +++G F  M   G+ PD   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR-------------CG 256
              VL +CA L D++LG  +H +I+  GLD ++    +L+NMY++              G
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 257 NV-------------------SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
            V                      R+IF+MM E ++++W  +I+G   +G   E + +  
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGR 356
            M    ++P++ T  +VL   A    +  G  +   S+RQ  GL   +     ++D++ +
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQ--GLDADIYVASSLIDMYAK 286

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SVEPEN 410
              + ++ + V  ++ E+   + W +++  C  +  FD G+     +L   ++P++
Sbjct: 287 CTRVADSCR-VFTLLTERDGIS-WNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKS 340


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/516 (42%), Positives = 325/516 (62%), Gaps = 8/516 (1%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLL---FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           D+FL NTLI  ++ +   +  L    F+  M+ S   P+ +TF  ++K+CA  +   +G 
Sbjct: 107 DAFLANTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACA--AFPGVGV 164

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYA--KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
             H      G+ +D +V   L++ Y+      +  AR VFDRM   S V W++MI GY +
Sbjct: 165 QAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVR 224

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           +G + +A+GLF  M+  GV PD  T + VLAA A LG ++L RWV  F+  +G+  +V L
Sbjct: 225 SGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGKSVTL 284

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             +LI+  A+CG++  A  +F  M E  +++WT++I    M G G EAV +F  M+  GV
Sbjct: 285 CNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGV 344

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
           RP++V F+ VL+AC+HAG+V EG+  F SMR  YG+ P +EH+ CMVD+FGRAG++  A 
Sbjct: 345 RPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAM 404

Query: 365 KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
           +FV   +  KP P +W  ++ AC+ H   +LG  +  +LL+  P +  +YVMLSN+YAL 
Sbjct: 405 EFVHK-MPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHEANYVMLSNVYALT 463

Query: 425 GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRC 484
            R      +R  M ++G+KK  G S VE+D + + F  GD+SHP   EIY  ++E+    
Sbjct: 464 RRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMAREL 523

Query: 485 REAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
           R AG++  +   + +L+EE++E +L++HSEKLA+AF L+RT PG  +R+VKNLR+C DCH
Sbjct: 524 RRAGHISATSEVLLDLDEEDKEVALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCH 583

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +AIK IS+  NREIIVRDR RFH FK GSCSC D+W
Sbjct: 584 AAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 619



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 127/266 (47%), Gaps = 4/266 (1%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLV-CDAG-FITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           Q HA  +  G+   + +   L+ +  C  G F+  A+ +F  +    +  ++ +I    +
Sbjct: 165 QAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVR 224

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
           +  S+D++  +R M  S + P   T   V+ + A L  L L R V   V   G    + +
Sbjct: 225 SGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGKSVTL 284

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             AL++  AK  ++D A  VF  M ++++V+W S+I      G  KEA+ +F  M+  GV
Sbjct: 285 CNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGV 344

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFI-VGQGLDVNVVLATSLINMYARCGNVSKAR 262
            PD    + VL AC+  G +D G    E + +  G+D  +     +++M+ R G V +A 
Sbjct: 345 RPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAM 404

Query: 263 E-IFDMMSELNVIAWTAMISGYGMHG 287
           E +  M  + N I W  +++    HG
Sbjct: 405 EFVHKMPMKPNPIIWRTLVAACRAHG 430


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/557 (40%), Positives = 348/557 (62%), Gaps = 10/557 (1%)

Query: 26  QVHAHLIVAGYGRS----RSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           Q+ A LI +    S      +  KL+    D   +  A  IF  + SP+ F  N  +   
Sbjct: 6   QIQAQLITSPIPSSVVDPNLIAVKLIGACADHANVRQAALIFAHLASPNIFAHNATLKAL 65

Query: 82  SKANFSTDSLLFYRRMIVSNISPS--NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
           ++ +    ++ F+   + S  +P+   +TF++V+K+CA L+ +  G+ +H  V   G++S
Sbjct: 66  AQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFES 125

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRM--PDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
           +L V+ +L++ Y K+  + +AR +FD M   D++VV WN+MI+GY QN    +AI +F +
Sbjct: 126 NLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRM 185

Query: 198 MRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
           M+ FG V P+  T V VL ACA LG +DLG+W+  FI  + + + + L  +L +MYA+CG
Sbjct: 186 MQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCG 245

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
            +++AR +F+ M E +VI+W+ +I G  M+G+  EA   F+ M   G +PN+V F+ +L+
Sbjct: 246 CITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLT 305

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC HAGLV++G   F +M +EYG+ P VEH+ C+VDL  RAG L++A   +   +  KP 
Sbjct: 306 ACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISS-MPMKPN 364

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
             +W A+LG C+++++   G  V +H+L ++ ++ G YV L+N+Y+  GR+D     R  
Sbjct: 365 VIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLR 424

Query: 437 MIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESA 496
           M + G+ K  G S +EVD   + F MGD SHP +N+IY  + ELM + + AGY P+++  
Sbjct: 425 MRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGYKPKTDLV 484

Query: 497 MHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNR 556
           +H ++EEE+E +L  HSEKLA+AFGL+ TS G TIR+VKNLR+C DCH A K IS    R
Sbjct: 485 VHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDAAKIISGIVKR 544

Query: 557 EIIVRDRLRFHHFKRGS 573
           EIIVRDR RFHHFK G+
Sbjct: 545 EIIVRDRSRFHHFKDGA 561



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 143/301 (47%), Gaps = 11/301 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
            P    + ++LKA   L  +   Q++HA +   G+  +  +   L+ +   AG++  A+ 
Sbjct: 89  NPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARH 148

Query: 62  IF--FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM-IVSNISPSNYTFSAVIKSCAH 118
           +F    +   +   +N +I   ++    +D++  +R M     + P++ T  +V+ +CAH
Sbjct: 149 LFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAH 208

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L  L+LG+ +   +        L +  AL + YAK   +  AR+VF++M ++ V++W+ +
Sbjct: 209 LGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSII 268

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-G 237
           I G    G A EA G F  M D G  P+    + +L AC   G +  G      +  + G
Sbjct: 269 ICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYG 328

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISG---YGMHGYGTEAV 293
           +   V     ++++ +R G + KA ++   M  + NVI W A++ G   Y   G G   V
Sbjct: 329 VSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVV 388

Query: 294 E 294
           +
Sbjct: 389 Q 389


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/506 (42%), Positives = 314/506 (62%), Gaps = 1/506 (0%)

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           N++I      N   +SL  +  M   +I P + TF AV+K+ A L    +G+ +H  V  
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
            G+  D++   ALV+ Y    ++  A ++FD MP+++ V WN++I+GY  N    +AI  
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           F  M   G  P   T V VL+AC+ LG  + G+W+HEFI    L +NV + T+LI+MYA+
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAK 237

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CG V +  ++F+ + E NV  W  +ISGY M+G G  A++ F RM     +P+ VTF+ V
Sbjct: 238 CGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGV 297

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L AC H GLV EG   F SM+Q++GL P +EH+ CMVDL GRAGLL EA + ++ +  E 
Sbjct: 298 LCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIE- 356

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P P +W A+L AC++H N  LG  + + L+ +EP N  +YV+LSNIY+   R   V  +R
Sbjct: 357 PDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLR 416

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
            +M  +G++K  G S++E++   Y F   +   P    IY+ LD L+ + +E GYV  ++
Sbjct: 417 GMMSLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTD 476

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
            A++++E+EE+E+S+ YHSEKLALAFGL+ +    T+RIVKNLR+C+DCH   K +S+  
Sbjct: 477 MALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVY 536

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
            R I+VRDR RFHHF  G CSC DYW
Sbjct: 537 KRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 43/230 (18%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L+ +    G +   +++F  I   + + +N LI   +       +L  + RM++ N  
Sbjct: 229 TALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFK 288

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   TF  V+ +C H  ++  GR      F+S                         ++ 
Sbjct: 289 PDEVTFLGVLCACCHQGLVTEGR----WQFMS------------------------MKQQ 320

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F   P   +  +  M+    + G  +EA+    L++   + PD      +L AC   G+ 
Sbjct: 321 FGLQP--RIEHYGCMVDLLGRAGLLEEAL---ELIQSMSIEPDPIIWRALLCACRVHGNT 375

Query: 224 DLGRWVHEFIVGQGLDV------NVVLATSLINMYARCGNVSKAREIFDM 267
            LG    E+I+ + +++      N VL +++ +   R   V K R +  +
Sbjct: 376 KLG----EYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSL 421


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/598 (37%), Positives = 344/598 (57%), Gaps = 31/598 (5%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
           ++L+    +  +  +HA LI  G+ +   M+ +LL        I YA RIF    +P+ +
Sbjct: 54  SLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVY 113

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
           L+  LI     +    +++  Y RM+  +I P NY  ++++K+C     L  GR VH   
Sbjct: 114 LYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRA 173

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD----------------------- 169
              G+ S+  V+  ++  Y K   +  AR+VF+ MP+                       
Sbjct: 174 LKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGA 233

Query: 170 -------KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
                  K  V W +MI G+ +N     A+  F  M+   V P+  T VCVL+AC+QLG 
Sbjct: 234 VFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGA 293

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           +++GRWVH ++    +++N+ +  +LINMY+RCG++ +A+ +FD M + +VI +  MISG
Sbjct: 294 LEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISG 353

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
             M+G   +A+ELF  M    +RP NVTFV VL+AC+H GLV  G  +F SM ++Y + P
Sbjct: 354 LSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEP 413

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
            +EH+ CMVDL GR G L EAY  ++  +   P   +   +L ACKMHKN +LG +VA+ 
Sbjct: 414 QIEHYGCMVDLLGRVGRLEEAYDLIR-TMKMTPDHIMLGTLLSACKMHKNLELGEQVAKE 472

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
           L      + G YV+LS++YA +G+      VR  M + G++K  G S++EV+ + + F +
Sbjct: 473 LEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLL 532

Query: 463 GDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGL 522
           GD  HP    IY+ L+EL    R  GY PE E  + ++E+ E+E++L  HSE+LA+ +GL
Sbjct: 533 GDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGL 592

Query: 523 MRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           + T P   IR++KNLR+C DCHSAIK I+  T R+I+VRDR RFH+F+ G+CSC DYW
Sbjct: 593 ISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/579 (39%), Positives = 340/579 (58%), Gaps = 4/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+  ++ +IL      + L   + VHA  +  G      + T L+ +    G I  A+R
Sbjct: 260 KPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARR 319

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   D   +  +I   ++ +   D+   +  M    I P   T+  +I +CA  + 
Sbjct: 320 VFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSAD 379

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L+L R +H  V  +G+ +DL V  ALV+ YAK   +  AR+VFD M  + VV+W++MI  
Sbjct: 380 LSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGA 439

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y +NG  +EA   F+LM+   V PD  T + +L AC  LG +DLG  ++   +   L  +
Sbjct: 440 YVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSH 499

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +  +LINM  + G++ +AR IF+ M + +V+ W  MI GY +HG   EA++LF RM  
Sbjct: 500 IPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLK 559

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
              RPN+VTFV VLSAC+ AG V+EG R F+ +    G++P +E + CMVDL GRAG L+
Sbjct: 560 ERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELD 619

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA + + + +  KP  ++W+ +L AC+++ N D+    AE  L  EP +   YV LS++Y
Sbjct: 620 EA-ELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMY 678

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AG  + V  VR +M  +G++K  G + +EV+ K + F + D+SHP   EIY  L  LM
Sbjct: 679 AAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLM 738

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              +  GY+P +++ +H + E+E+E ++ YHSEKLA+A+G++    G  IRI KNLR+C 
Sbjct: 739 TAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCG 798

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSA KFIS  T REII RD  RFHHFK G CSC DYW
Sbjct: 799 DCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 204/384 (53%), Gaps = 3/384 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  ++ HA +I  G+     + T L+S+    G +  A+++F  +   D   FN +I  
Sbjct: 178 LKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGG 237

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            +K+     +   + RM      P+  +F +++  C+    L  G+AVH     +G   D
Sbjct: 238 YAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDD 297

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           + V  AL+  Y    +++ AR+VFD+M  + VV+W  MI GY +N   ++A GLF  M++
Sbjct: 298 VRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQE 357

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G+ PD  T + ++ ACA   D+ L R +H  +V  G   ++++ T+L++MYA+CG +  
Sbjct: 358 EGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKD 417

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           AR++FD MS  +V++W+AMI  Y  +G G EA E FH M+ + V P+ VT++ +L+AC H
Sbjct: 418 ARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGH 477

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
            G +  G  ++    +   L+  +     ++++  + G +  A    ++++  +     W
Sbjct: 478 LGALDLGMEIYTQAIKA-DLVSHIPVGNALINMNVKHGSIERARYIFENMV--QRDVVTW 534

Query: 381 TAMLGACKMHKNFDLGVEVAEHLL 404
             M+G   +H N    +++ + +L
Sbjct: 535 NVMIGGYSLHGNAREALDLFDRML 558



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 191/363 (52%), Gaps = 5/363 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QV  H+I +G   +   L  L+ L    G +  A++ F  + +     +N +I   ++ 
Sbjct: 81  KQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQL 140

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++   +R+M+   + PS  TF  V+ +C+  + L LG+  H  V   G+ SD  + 
Sbjct: 141 GHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIG 200

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            ALV+ Y K  ++D AR+VFD +  + V  +N MI GY ++G  ++A  LF  M+  G  
Sbjct: 201 TALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFK 260

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  + + +L  C+    +  G+ VH   +  GL  +V +AT+LI MY  CG++  AR +
Sbjct: 261 PNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRV 320

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD M   +V++WT MI GY  +    +A  LF  M+  G++P+ +T++ +++ACA +  +
Sbjct: 321 FDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADL 380

Query: 325 QEGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
                + +  +R  +G    V+    +V ++ + G + +A + V D +  +   + W+AM
Sbjct: 381 SLAREIHSQVVRAGFGTDLLVD--TALVHMYAKCGAIKDARQ-VFDAMSRRDVVS-WSAM 436

Query: 384 LGA 386
           +GA
Sbjct: 437 IGA 439



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 148/292 (50%), Gaps = 13/292 (4%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T+  + + C  L    LG+ V  H+  SG   +++    L+  ++   N+  AR+ FD +
Sbjct: 63  TYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSV 122

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
            +K+VV WN++I+GY Q G  KEA  LF  M D  + P   T + VL AC+    + LG+
Sbjct: 123 ENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGK 182

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
             H  ++  G   +  + T+L++MY + G++  AR++FD + + +V  +  MI GY   G
Sbjct: 183 EFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSG 242

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
            G +A +LF+RM+  G +PN ++F+++L  C+    +  G  V A      GL+  V   
Sbjct: 243 DGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQC-MNTGLVDDVRVA 301

Query: 348 VCMVDLFGRAGLLNEAYKF-----VKDVIGEKPAPAVWTAMLGACKMHKNFD 394
             ++ ++   G +  A +      V+DV+        WT M+     + N +
Sbjct: 302 TALIRMYMGCGSIEGARRVFDKMKVRDVVS-------WTVMIRGYAENSNIE 346



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 1/158 (0%)

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           DS T V +   C  L D  LG+ V + I+  G  +N+    +LI +++ CGN+ +AR+ F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D +    V+ W A+I+GY   G+  EA  LF +M    + P+ +TF+ VL AC+    ++
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
            G + F +   + G +        +V ++ + G ++ A
Sbjct: 180 LG-KEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGA 216


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/578 (39%), Positives = 339/578 (58%), Gaps = 5/578 (0%)

Query: 6   PHSPAYEAILK---AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P S  Y ++L    +    + +++VH H +  G      + +  + +    G I  AQ I
Sbjct: 333 PDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLI 392

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   +   +N +I   ++     ++L  + +M      P   TF  ++ +      L
Sbjct: 393 FDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEAL 452

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
              + VH +   +G   DL V  ALV+ YAK  N   A++VFD M +++V  W  MISG 
Sbjct: 453 EWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGL 511

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q+G   EA  LF  M   G+ PD+TT V +L+ACA  G ++  + VH   V  GL  ++
Sbjct: 512 AQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDL 571

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +  +L++MYA+CG+V  AR +FD M E +V +WT MI G   HG G +A++LF +M+  
Sbjct: 572 RVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLE 631

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G +PN  +FVAVLSAC+HAGLV EG R F S+ Q+YG+ P +EH+ CMVDL GRAG L E
Sbjct: 632 GFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEE 691

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A  F+ ++  E P  A W A+LGAC  + N ++    A+  L ++P++   YV+LSNIYA
Sbjct: 692 AKHFILNMPIE-PGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYA 750

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             G  ++  +VR++M ++G++K  G S +EVD + + F +GD SHP + EIY  L +L+ 
Sbjct: 751 ATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIK 810

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           R +  GYVP++   +   ++E +E +L  HSEKLA+ +GLM T     IR+ KNLR+C D
Sbjct: 811 RLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSD 870

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+A KFIS  T REI+ RD  RFHHFK G CSC DYW
Sbjct: 871 CHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 204/397 (51%), Gaps = 18/397 (4%)

Query: 5   QPHSPAYEAILKA--GP-RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP+   Y +ILKA   P  LK  +++HAH+I +G+     + T L+++    G I  AQ 
Sbjct: 27  QPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQL 86

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYR--RMIVSNISPSNYTFSAVIKSCAHL 119
           IF  +   +   +  +I     A++      F+R  +M      P++YT+ +++ + A  
Sbjct: 87  IFDKMVERNVISWTVMI--GGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASA 144

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             L   + VH H   +G   DL V  ALV+ YAKS ++D AR VFD M ++ + +W  MI
Sbjct: 145 GALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMI 204

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA--QLGDIDLGRWVHEFIVGQG 237
            G  Q+G  +EA  LF  M   G  P+ TT + +L A A    G ++  + VH+     G
Sbjct: 205 GGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAG 264

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
              ++ +  +LI+MYA+CG++  AR +FD M + +VI+W AMI G   +G G EA  +F 
Sbjct: 265 FISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFL 324

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAG---LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
           +M+  G  P++ T++++L+     G    V+E H+       E GL+  +      V ++
Sbjct: 325 KMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHK----HAVEVGLVSDLRVGSAFVHMY 380

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHK 391
            R G +++A + + D +  +     W AM+G     K
Sbjct: 381 IRCGSIDDA-QLIFDKLAVRNV-TTWNAMIGGVAQQK 415



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 192/367 (52%), Gaps = 18/367 (4%)

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            ++ D++  Y +M      P+  T+ +++K+C     L  G+ +H H+  SG+ SD+ V+
Sbjct: 9   GYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVE 68

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            ALVN Y K  ++D A+ +FD+M +++V++W  MI G    G  +EA   F  M+  G  
Sbjct: 69  TALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI 128

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+S T V +L A A  G ++  + VH   V  GL +++ +  +L++MYA+ G++  AR +
Sbjct: 129 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVV 188

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG-- 322
           FD M E ++ +WT MI G   HG G EA  LF +M   G  PN  T++++L+A A     
Sbjct: 189 FDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTG 248

Query: 323 ---LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
               V+E H+       + G +  +     ++ ++ + G +++A + V D + ++   + 
Sbjct: 249 ALEWVKEVHK----HAGKAGFISDLRVGNALIHMYAKCGSIDDA-RLVFDGMCDRDVIS- 302

Query: 380 WTAMLGACKM----HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
           W AM+G        H+ F + +++ +      P++   Y+ L N +   G  + V+ V  
Sbjct: 303 WNAMIGGLAQNGCGHEAFTIFLKMQQE--GFVPDST-TYLSLLNTHVSTGAWEWVKEVHK 359

Query: 436 IMIQKGL 442
             ++ GL
Sbjct: 360 HAVEVGL 366



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 167/317 (52%), Gaps = 5/317 (1%)

Query: 6   PHSPAYEAILKAGPR---LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+S  Y +IL A      L+ +++VH+H + AG      +   L+ +   +G I  A+ +
Sbjct: 129 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVV 188

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI- 121
           F  +   D F +  +I   ++     ++   + +M      P+  T+ +++ + A  S  
Sbjct: 189 FDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTG 248

Query: 122 -LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L   + VH H   +G+ SDL V  AL++ YAK  ++D AR VFD M D+ V++WN+MI 
Sbjct: 249 ALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIG 308

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           G  QNG   EA  +F  M+  G  PDSTT + +L      G  +  + VH+  V  GL  
Sbjct: 309 GLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVS 368

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           ++ + ++ ++MY RCG++  A+ IFD ++  NV  W AMI G      G EA+ LF +MR
Sbjct: 369 DLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMR 428

Query: 301 AHGVRPNNVTFVAVLSA 317
             G  P+  TFV +LSA
Sbjct: 429 REGFFPDATTFVNILSA 445



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 120/213 (56%), Gaps = 3/213 (1%)

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           MI GY + G+A++A+ +++ MR  G  P+  T + +L AC     +  G+ +H  I+  G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
              +V + T+L+NMY +CG++  A+ IFD M E NVI+WT MI G   +G G EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
           +M+  G  PN+ T+V++L+A A AG ++    V  S     GL   +     +V ++ ++
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVH-SHAVNAGLALDLRVGNALVHMYAKS 179

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           G +++A + V D + E+   + WT M+G    H
Sbjct: 180 GSIDDA-RVVFDGMVERDIFS-WTVMIGGLAQH 210


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/535 (38%), Positives = 324/535 (60%), Gaps = 2/535 (0%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LL +    G +  A R+F  +       + ++I    +   S  ++  +  M    + P 
Sbjct: 394 LLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPD 453

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            Y  ++++ +CA    L  G+ VH ++  +  +++  V  AL + YAK  ++  A  VF 
Sbjct: 454 VYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFS 513

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            M  K V++WN+MI GY +N    EA+ LF  M+     PD TT  C+L ACA L  +D 
Sbjct: 514 HMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDK 572

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           GR +H + +  G   +  +  ++++MY +CG +  AR +FDM+   ++++WT MI+GYGM
Sbjct: 573 GREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGM 632

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           HGYG+EA+  F++MR  G+ P+ V+F+++L AC+H+GL+ EG ++F  M++E  + P +E
Sbjct: 633 HGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLE 692

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ CMVDL  R G L +A+KF+K  +  KP   +W A+L  C++H +  L  +VAE +  
Sbjct: 693 HYACMVDLLARTGNLVKAHKFIK-AMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFE 751

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           +EPEN G+YV+L+NIYA A + + V+ +R  + Q+GLKK+ G S +E+  K  +F  GD 
Sbjct: 752 LEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDC 811

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
           S P   +I   L  L  + +E GY P++  A+   +E E+E +L  HSEKLA+AFG++  
Sbjct: 812 SKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNL 871

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            PG TIR+ KNLR+C DCH   KF+S + +REII+RD  RFHHFK GSCSC  YW
Sbjct: 872 PPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 187/348 (53%), Gaps = 14/348 (4%)

Query: 45  KLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP 104
           KL+ +    G +   + +F  +     FL+N +I   S +    +S+  +++M+   I P
Sbjct: 190 KLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKP 249

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           ++YTFS+++K  A ++ +  GR VH  +   G++S   V  +L++FY     V  A+K+F
Sbjct: 250 NSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLF 309

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           D + D+ V++WNSMISGY +NG     I +F  M  FGV+ D  T V V  ACA +G + 
Sbjct: 310 DELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLL 369

Query: 225 LGRWVHEF-IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
           LG+ +H + I    LD  V    +L++MY++CG+++ A  +F+ M E  V++WT+MI+GY
Sbjct: 370 LGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGY 429

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
              G    A++LF  M++ GV P+     ++L+ACA  G ++ G  V   +R E  L   
Sbjct: 430 VREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIR-ENNLETN 488

Query: 344 VEHHVCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAVWTAMLGA 386
                 + D++ + G + +A+        KDVI        W  M+G 
Sbjct: 489 SFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVIS-------WNTMIGG 529



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/440 (28%), Positives = 220/440 (50%), Gaps = 13/440 (2%)

Query: 5   QPHSPAYEAILK---AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+S  + +ILK   A  R++  +QVH  +   G+    +++  L+S       +  AQ+
Sbjct: 248 KPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQK 307

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   D   +N++I    K       +  + +M+V  +     T   V  +CA++  
Sbjct: 308 LFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGT 367

Query: 122 LNLGRAVHCH-VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
           L LG+ +H + +  +  D ++     L++ Y+K  +++ A +VF+RM +K+VV+W SMI+
Sbjct: 368 LLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMIT 427

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY + G +  AI LF+ M+  GV PD      +L ACA  G++  G+ VH++I    L+ 
Sbjct: 428 GYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLET 487

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           N  ++ +L +MYA+CG++  A ++F  M + +VI+W  MI GY  +    EA+ LF  M+
Sbjct: 488 NSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQ 547

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGL 359
               +P+  T   +L ACA    + +G  +   ++R  Y     V + V  VD++ + GL
Sbjct: 548 RES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAV--VDMYVKCGL 604

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L  A     D+I  K   + WT M+    MH      +     +     E P     +S 
Sbjct: 605 LVLARSLF-DMIPNKDLVS-WTVMIAGYGMHGYGSEAINTFNQMRMTGIE-PDEVSFISI 661

Query: 420 IYAL--AGRMDRVEVVRNIM 437
           +YA   +G +D    + NIM
Sbjct: 662 LYACSHSGLLDEGWKIFNIM 681



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 188/403 (46%), Gaps = 10/403 (2%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           + ++++ CA    +  GR V   +  SG   D  +   LV  Y K  ++   R VFD++ 
Sbjct: 153 YCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLS 212

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           +  +  WN MIS Y  +G   E+I LF  M + G+ P+S T   +L   A +  ++ GR 
Sbjct: 213 ESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQ 272

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           VH  I   G +    +  SLI+ Y     V  A+++FD +++ +VI+W +MISGY  +G 
Sbjct: 273 VHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGL 332

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
               +E+F +M   GV  +  T V V  ACA+ G +  G  + +   +   L   V  + 
Sbjct: 333 DDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNN 392

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
            ++D++ + G LN A + V + + EK   + WT+M+         D  +++ + + S   
Sbjct: 393 TLLDMYSKCGDLNSAIR-VFERMDEKTVVS-WTSMITGYVREGLSDGAIKLFDEMKS-RG 449

Query: 409 ENPGHYVMLS--NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK- 465
             P  Y + S  N  A+ G +   ++V + + +  L+ +   S    D      SM D  
Sbjct: 450 VVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAH 509

Query: 466 ---SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
              SH    ++  + + ++G   +     E+ +   E++ E +
Sbjct: 510 DVFSHMKKKDVISW-NTMIGGYTKNSLPNEALTLFAEMQRESK 551


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/568 (38%), Positives = 352/568 (61%), Gaps = 3/568 (0%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           ++KA   L   +++H  ++  G+     +   L+ +    G +  A+++F  +P+ D   
Sbjct: 3   VVKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGS 62

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N +I    +   + ++L     M +  +     T ++V+  CA +  +  G+ +H +V 
Sbjct: 63  WNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVI 122

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
             G + +L V  AL+N YAK  ++  A+KVF  +  K VV+WN++I+GY QNG A EAI 
Sbjct: 123 KHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIE 181

Query: 194 LFNLMRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252
           ++ LM +   + P+  T V +L A + +G +  G  +H  ++   L  +V + T LI+MY
Sbjct: 182 VYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMY 241

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
            +CG +  A  +F  +   N + W AMIS YG+HG G +A+ELF  M+A  V+P+++TFV
Sbjct: 242 GKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFV 301

Query: 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372
           ++LSAC+H+GLV +    F  M +EYG+ P ++H+ CMVDLFGRAG L  A+ F+K  + 
Sbjct: 302 SLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKK-MP 360

Query: 373 EKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432
            +P  + W A+L AC++H N +LG   +E L  V+ EN G+YV+LSNIYA  G+ + V+ 
Sbjct: 361 IQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDD 420

Query: 433 VRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPE 492
           VR++   +GL+K+ G+S++ ++ K  +F  G+++HP   EIY+ L +L  + +  GYVP+
Sbjct: 421 VRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPD 480

Query: 493 SESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISV 552
               + ++EE+E+E+ L  HSE+LA+A+G++ TSP   IRI KNLR+C DCH+  KFIS+
Sbjct: 481 FCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISI 540

Query: 553 ATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            T REIIVRD  RFHHFK G+CSC DYW
Sbjct: 541 ITEREIIVRDSSRFHHFKGGTCSCGDYW 568


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/613 (37%), Positives = 356/613 (58%), Gaps = 40/613 (6%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P    +  +LK  P L  ++Q+HA ++  G  ++ S+L  L+        +++A+ +F  
Sbjct: 53  PSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQ 112

Query: 66  IPS-PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN--ISPSNYTFSAVIKSCA-HLSI 121
            PS P + ++N +I   SK   S +SL  + +M+      S   YTF+ V  +C+ H ++
Sbjct: 113 FPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTL 172

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
              G  VH  V   GY+SD+ V  +LVN Y+  + +  A++VFD MP + V+ W S++ G
Sbjct: 173 RGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKG 232

Query: 182 YEQNG-------------------------------FAKEAIGLFN-LMRDFGVNPDSTT 209
           Y   G                               F  EA+  FN ++    V P+   
Sbjct: 233 YAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAV 292

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
            V +L+ACA LG +D G+W+H +I    + ++  ++T+LI+MYA+CG +  AR +FD + 
Sbjct: 293 LVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLH 352

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
           + +++ WT+MISG  MHG G E +  F  M A G +P+++T + VL+ C+H+GLV+EG  
Sbjct: 353 KRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLS 412

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
           +F  M   +G++P +EH+ C++DL GRAG L  A++ +K +  E P    W A+L AC++
Sbjct: 413 IFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPME-PDVVAWRALLSACRI 471

Query: 390 HKNFDLGVEVAEHLLSVEP-ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGY 448
           H + DLG  +  H+  + P  + G YV+LSN+YA  G+ + V  VR  M Q+G +   G 
Sbjct: 472 HGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGC 531

Query: 449 STVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR-EAGYVPESESAMHELEEEEREY 507
           S +E+D   + F   DK HP  +EI + L+E++ R   E GYVP ++  + +L EE++E 
Sbjct: 532 SWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQ 591

Query: 508 SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFH 567
           ++ +HSEKLA+AFGL+ T  G TIRI KNLR C DCHSA+K IS+  NREI+VRDR RFH
Sbjct: 592 AVSWHSEKLAVAFGLLSTQEG-TIRITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRFH 650

Query: 568 HFKRGSCSCLDYW 580
            F+ G+CSC DYW
Sbjct: 651 TFRYGNCSCTDYW 663


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/506 (42%), Positives = 314/506 (62%), Gaps = 1/506 (0%)

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           N++I      N   +SL  +  M   +I P + TF AV+K+ A L    +G+ +H  V  
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
            G+  D++   ALV+ Y    ++  A ++FD MP+++ V WN++I+GY  N    +AI  
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           F  M   G  P   T V VL+AC+ LG  + G+W+HEFI    L +NV + T+LI+MYA+
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAK 237

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CG V +  ++F+ + E NV  W  +ISGY M+G G  A++ F RM     +P+ VTF+ V
Sbjct: 238 CGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGV 297

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L AC H GLV EG   F SM+Q++GL P +EH+ CMVDL GRAGLL EA + ++ +  E 
Sbjct: 298 LCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIE- 356

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P P +W A+L AC++H N  LG  + + L+ +EP N  +YV+LSNIY+   R   V  +R
Sbjct: 357 PDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLR 416

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
            +M  +G++K  G S++E++   Y F   +   P    IY+ LD L+ + +E GYV  ++
Sbjct: 417 GMMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTD 476

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
            A++++E+EE+E+S+ YHSEKLALAFGL+ +    T+RIVKNLR+C+DCH   K +S+  
Sbjct: 477 MALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVY 536

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
            R I+VRDR RFHHF  G CSC DYW
Sbjct: 537 KRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 43/230 (18%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L+ +    G +   +++F  I   + + +N LI   +       +L  + RM++ N  
Sbjct: 229 TALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFK 288

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   TF  V+ +C H  ++  GR      F+S                         ++ 
Sbjct: 289 PDEVTFLGVLCACCHQGLVTEGR----WQFMS------------------------MKQQ 320

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F   P   +  +  M+    + G  +EA+    L++   + PD      +L AC   G+ 
Sbjct: 321 FGLQP--RIEHYGCMVDLLGRAGLLEEAL---ELIQSMSIEPDPIIWRALLCACRVHGNT 375

Query: 224 DLGRWVHEFIVGQGLDV------NVVLATSLINMYARCGNVSKAREIFDM 267
            LG    E+I+ + +++      N VL +++ +   R   V K R + ++
Sbjct: 376 KLG----EYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNL 421


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/578 (38%), Positives = 330/578 (57%), Gaps = 36/578 (6%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           R+  + T L++     G +T A+ I   +       +N +I          D+L  +R+M
Sbjct: 221 RNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKM 280

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD----LHVQAALVNFYAK 153
            +  +     T+++VI +CA      LG+ VH ++  +  + D    L V   L+  Y K
Sbjct: 281 RLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWK 340

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGY------------------------------- 182
              VD ARK+F  MP K ++ WN+++SGY                               
Sbjct: 341 YGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGL 400

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            QNGF ++A+ LFN M+  G  P+       + AC+ LG ++ GR +H  IV  G D  +
Sbjct: 401 AQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTL 460

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +  ++I MYARCG V  AR +F  M  ++ ++W +MI+  G HG+G +A+EL+ +M   
Sbjct: 461 SVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKE 520

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+ P+  TF+ VLSAC+HAGLV+EG+R F SM + YG+ PG +H+  M+DLF RAG  ++
Sbjct: 521 GILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSD 580

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A   +  +  E  AP +W A+L  C+ H N DLG+E AE L  + P++ G YV+LSN+YA
Sbjct: 581 AKNVIDSMPFEARAP-IWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYA 639

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             GR + V   R +M  +G+KK    S  EV+ K ++F + D  HP    IY YL++L  
Sbjct: 640 SLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNL 699

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             ++ GY+P+++  +H++E E +EY+L  HSEKLA+AFGLM+   G T+R+ KNLR+C D
Sbjct: 700 EMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRICGD 759

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+AIKF+S    REI+VRD  RFHHFK G CSC +YW
Sbjct: 760 CHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 114/491 (23%), Positives = 206/491 (41%), Gaps = 116/491 (23%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP--------------- 69
           + VH H+I +G+     ++ +L+ +   +    YA+++F  IP P               
Sbjct: 33  RTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSAL 92

Query: 70  ------------------DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA 111
                             D+  +N +I   S  N    ++  +R M  +N  P ++TF++
Sbjct: 93  GNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFAS 152

Query: 112 VI----------KSCAHL-------------SILN--LGRAVHC---------------- 130
           V+          + C  +             ++LN  L   V C                
Sbjct: 153 VLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASAR 212

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
            +F      +  +   L+  Y ++ ++  AR++ D M ++  +AWN+MISGY  +G  ++
Sbjct: 213 KLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFED 272

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL----DVNVVLAT 246
           A+ LF  MR  GV  D +T   V++ACA  G   LG+ VH +I+   L    D  + +  
Sbjct: 273 ALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGN 332

Query: 247 SLINMYARCGNVSKAREI-------------------------------FDMMSELNVIA 275
           +LI +Y + G V  AR+I                               F  M E N++ 
Sbjct: 333 TLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLT 392

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           WT MISG   +G+G +A++LF++M+  G  PN+  F   ++AC+  G ++ G ++ A + 
Sbjct: 393 WTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIV 452

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP--APAVWTAMLGACKMHKNF 393
              G    +     M+ ++ R G++  A    + +    P   P  W +M+ A   H + 
Sbjct: 453 H-LGHDSTLSVGNAMITMYARCGIVEAA----RTMFLTMPFVDPVSWNSMIAALGQHGHG 507

Query: 394 DLGVEVAEHLL 404
              +E+ E +L
Sbjct: 508 VKAIELYEQML 518



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 147/352 (41%), Gaps = 87/352 (24%)

Query: 105 SNYTFSAVIKSCAH-LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           +N  F+ +   C   LS  +L R VH HV  SG+    H+   L++ Y KS++   ARK+
Sbjct: 11  ANRYFAQLNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKL 70

Query: 164 FDRMPDKSVVA---------------------------------WNSMISGYEQNGFAKE 190
           FD +P   V+A                                 +N+MI+GY        
Sbjct: 71  FDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHS 130

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAA----------CAQLGD--IDLGRWVHEFIVGQGL 238
           AI LF  MR     PD  T   VL+A          C Q+    +  G  +   ++   L
Sbjct: 131 AIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALL 190

Query: 239 DV-----------------------------NVVLATSLINMYARCGNVSKAREIFDMMS 269
            V                             N  + T+LI  Y R G+++ AREI D M+
Sbjct: 191 SVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMT 250

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
           E   IAW AMISGY  HG   +A+ LF +MR  GV+ +  T+ +V+SACA  G    G +
Sbjct: 251 EQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQ 310

Query: 330 VFA-----SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVI 371
           V A      +  +   L  V +   ++ L+ + G ++ A K      VKD+I
Sbjct: 311 VHAYILKNELNPDRDFLLSVGN--TLITLYWKYGKVDGARKIFYEMPVKDII 360


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/588 (38%), Positives = 363/588 (61%), Gaps = 10/588 (1%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           +   P    YE ++ +  R   L Q   +H HLI  G  +   + TKL+++  +   I  
Sbjct: 72  QEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDN 131

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC-- 116
           A+++F        +++N L    + A +  + L  YRRM    +    +T++ V+K+C  
Sbjct: 132 ARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVA 191

Query: 117 --AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
             A +S+L  GR +H H+   G++  +H+   L++ YA+   V  A +VFD+MP K+VV+
Sbjct: 192 SEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVS 251

Query: 175 WNSMISGYEQNGFAKEAIGLFN--LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           W++MI+ Y +NG   EA+ LF   ++ +  + P+S T V VL ACA L  ++ G+ +H +
Sbjct: 252 WSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGY 311

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           I+ +GLD  + + ++L+ +YARCGN+     +F+ M + +V++W ++IS YG+HG+G +A
Sbjct: 312 ILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKA 371

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           +++F  M   G+ P+ ++FV+VL AC+HAGLV+EG  +F SM + + + P VEH+ CMVD
Sbjct: 372 IQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVD 431

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L GRA  L+EA K + D+  E P P VW ++LG+C++H N +L       L  +EP N G
Sbjct: 432 LLGRANRLDEAAKIIDDMRIE-PGPKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAG 490

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
           +YV+L++IYA A   + V+ V+ ++  +GL+K  G S +E+ +K Y F   D+ +P   +
Sbjct: 491 NYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQ 550

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           ++  L +L    +E GYVP+++  +++L+ EE+E  +  HSEKLALAFGL+ +  G TIR
Sbjct: 551 LHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLGHSEKLALAFGLINSKKGETIR 610

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           I KNLR+C DCHS  KFIS   NREI+VRD  RFH F+ G CSC DYW
Sbjct: 611 ITKNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQDGVCSCGDYW 658


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/652 (34%), Positives = 367/652 (56%), Gaps = 79/652 (12%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ-----QVHAHLIVAGYGRSRSMLTKLLSLV--CDAGFIT 57
           +P   ++ A+L AG  L  +      Q+H  ++ +G G + S+   L++L   C++   T
Sbjct: 154 RPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEAT 213

Query: 58  Y-AQRIFFCIPSPDSFLFNTLIIRNSK-------------------------------AN 85
             A+++   +P+ D   + T+++   +                               + 
Sbjct: 214 RDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSG 273

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV------FVSGYDS 139
            + ++   +RRM++  +    +TF++V+ +CA++ +   G++VH  +      FV   ++
Sbjct: 274 MAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVP--EA 331

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS---------------------- 177
            L V  ALV FY+K  N+ VAR++FD M  K VV+WN+                      
Sbjct: 332 ALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMP 391

Query: 178 ---------MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
                    M+SGY   GFA++A+ LFN MR   V P   T    +AAC +LG +  G+ 
Sbjct: 392 YKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQ 451

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H  IV  G + +     +LI MYARCG V +A  +F +M  ++ ++W AMIS  G HG+
Sbjct: 452 LHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGH 511

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
           G EA+ELF RM A G+ P+ ++F+ VL+AC H+GLV EG R F SM++++G++PG +H+ 
Sbjct: 512 GREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYT 571

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
            ++DL GRAG + EA   +K +  E P P++W A+L  C+   + +LG   A+ L  + P
Sbjct: 572 RLIDLLGRAGRIGEARDLIKTMPFE-PTPSIWEAILSGCRTSGDMELGAHAADQLFKMTP 630

Query: 409 ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHP 468
           ++ G Y++LSN Y+ AG       VR +M  +G+KK  G S +E   K ++F +GD  HP
Sbjct: 631 QHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHP 690

Query: 469 NTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPG 528
             +E+Y++L+ +  + R+ GYVP+++  +H++E  ++E+ L  HSE+LA+ FGL+   PG
Sbjct: 691 EAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPG 750

Query: 529 MTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            T+ ++KNLR+C DCH+AI F+S A  REI+VRD  RFHHFK G CSC +YW
Sbjct: 751 ATVTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 192/440 (43%), Gaps = 85/440 (19%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSP--DSFLFNTLIIRNSKANFSTDSLLFYRRMIVS- 100
           T L++    A  +  A   F  +P    D+ L N +I   ++A+ +  ++  +R ++ S 
Sbjct: 92  TSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRA--VHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158
           ++ P +Y+F+A++ +  HL  +++     +HC V  SG    L V  ALV  Y K  + +
Sbjct: 152 SLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPE 211

Query: 159 V---ARKVFDRMPDKSV-------------------------------VAWNSMISGYEQ 184
               ARKV D MP+K                                 V WN+MISGY  
Sbjct: 212 ATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVH 271

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH--------EFIVGQ 236
           +G A EA  LF  M    V  D  T   VL+ACA +G    G+ VH         F+   
Sbjct: 272 SGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEA 331

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA------------------ 278
            L VN     +L+  Y++CGN++ AR IFD M+  +V++W                    
Sbjct: 332 ALPVN----NALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVF 387

Query: 279 -------------MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
                        M+SGY   G+  +A++LF++MR+  V+P + T+   ++AC   G ++
Sbjct: 388 EEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALK 447

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            G ++   + Q  G          ++ ++ R G + EA+     ++        W AM+ 
Sbjct: 448 HGKQLHGHIVQ-LGFEGSNSAGNALITMYARCGAVKEAHLMF--LVMPNIDSVSWNAMIS 504

Query: 386 ACKMHKNFDLGVEVAEHLLS 405
           A   H +    +E+ + +++
Sbjct: 505 ALGQHGHGREALELFDRMVA 524



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMM--SELNVIAWTAMISGYGMHGYGTEAVELF 296
           D   V ATSL+  YA    +  A   FD +  +  + +   A+IS Y    +   AV +F
Sbjct: 85  DPCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVF 144

Query: 297 HRMRAHG-VRPNNVTFVAVLSACAH 320
             + A G +RP++ +F A+LSA  H
Sbjct: 145 RSLLASGSLRPDDYSFTALLSAGGH 169


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/613 (36%), Positives = 348/613 (56%), Gaps = 41/613 (6%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   +  ++KA   +  L   Q +H   + +  G    +   L+      G +  A ++
Sbjct: 129 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKV 188

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  I   D   +N++I    +      +L  +++M   ++  S+ T   V+ +CA +  L
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNL 248

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD----------------- 165
             GR V  ++  +  + +L +  A+++ Y K  +++ A+++FD                 
Sbjct: 249 EFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGY 308

Query: 166 --------------RMPDKSVVAWNSMISGYEQNGFAKEAIGLF---NLMRDFGVNPDST 208
                          MP K +VAWN++IS YEQNG   EA+ +F    L ++  +N    
Sbjct: 309 AISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLN--QI 366

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           T V  L+ACAQ+G ++LGRW+H +I   G+ +N  + ++LI+MY++CG++ K+RE+F+ +
Sbjct: 367 TLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSV 426

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
            + +V  W+AMI G  MHG G EAV++F++M+   V+PN VTF  V  AC+H GLV E  
Sbjct: 427 EKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAE 486

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
            +F  M   YG++P  +H+ C+VD+ GR+G L +A KF+ + +   P+ +VW A+LGACK
Sbjct: 487 SLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFI-EAMPIPPSTSVWGALLGACK 545

Query: 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGY 448
           +H N +L       LL +EP N G +V+LSNIYA  G+ + V  +R  M   GLKK  G 
Sbjct: 546 IHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGC 605

Query: 449 STVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE-REY 507
           S++E+D   + F  GD +HP + ++Y  L E+M + +  GY PE    +  +EEEE +E 
Sbjct: 606 SSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQ 665

Query: 508 SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFH 567
           SL  HSEKLA+ +GL+ T     IR++KNLR+C DCHS  K IS   +REIIVRDR RFH
Sbjct: 666 SLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFH 725

Query: 568 HFKRGSCSCLDYW 580
           HF+ G CSC D+W
Sbjct: 726 HFRNGQCSCNDFW 738



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 210/405 (51%), Gaps = 38/405 (9%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFLFNTLI 78
           L+ L+Q H H+I  G        +KL ++   + F  + YA+++F  IP P+SF +NTLI
Sbjct: 43  LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLI 102

Query: 79  IRNSKANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
              +       S+  +  M+  S   P+ YTF  +IK+ A +S L+LG+++H     S  
Sbjct: 103 RAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAV 162

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
            SD+ V  +L++ Y    ++D A KVF  + +K VV+WNSMI+G+ Q G   +A+ LF  
Sbjct: 163 GSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKK 222

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M    V     T V VL+ACA++ +++ GR V  +I    ++VN+ LA ++++MY +CG+
Sbjct: 223 MESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGS 282

Query: 258 VSKAREIFDMMSE-------------------------------LNVIAWTAMISGYGMH 286
           +  A+ +FD M E                                +++AW A+IS Y  +
Sbjct: 283 IEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQN 342

Query: 287 GYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           G   EA+ +FH ++    ++ N +T V+ LSACA  G ++ G R   S  +++G+     
Sbjct: 343 GKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFH 401

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
               ++ ++ + G L ++ +    V  EK    VW+AM+G   MH
Sbjct: 402 VTSALIHMYSKCGDLEKSREVFNSV--EKRDVFVWSAMIGGLAMH 444


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/581 (38%), Positives = 345/581 (59%), Gaps = 4/581 (0%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLS--LVCDAGFITYAQ 60
           N + +   + ++LK    ++  +QVHAH++  G        + L++   +   G + YA 
Sbjct: 26  NAKFNEQGWLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYAC 85

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
            IF  I  P SF +NT+I  N  +    ++LL Y  M+   I P N+T+  V+K+C+ L 
Sbjct: 86  SIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLV 145

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L  G  +H HVF +G + D+ VQ  L++ Y K   ++ A  VF++M +KSV +W+S+I 
Sbjct: 146 ALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIG 205

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVN-PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
            +       E + L   M   G +  + +  V  L+AC  LG  +LGR +H  ++    +
Sbjct: 206 AHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISE 265

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
           +NVV+ TSLI+MY +CG++ K   +F  M+  N  ++T MI+G  +HG G EAV +F  M
Sbjct: 266 LNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDM 325

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
              G+ P++V +V VLSAC+HAGLV EG + F  M+ E+ + P ++H+ CMVDL GRAG+
Sbjct: 326 LEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGM 385

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L EAY  +K  +  KP   VW ++L ACK+H N ++G   AE++  +   NPG Y++L+N
Sbjct: 386 LKEAYDLIKS-MPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLAN 444

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           +YA A +   V  +R  M +K L +  G+S VE ++  Y F   DKS P    IY  + +
Sbjct: 445 MYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQ 504

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           +  + +  GY P+    + +++E+E+   L++HS+KLA+AF L++TS G  IRI +NLRM
Sbjct: 505 MEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRM 564

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCH+  KFISV   REI VRDR RFHHFK G+CSC DYW
Sbjct: 565 CNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/580 (38%), Positives = 349/580 (60%), Gaps = 7/580 (1%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P S  +  +LKA   L  LQ    VHA +   G+     +   L++L      +  A+ +
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFST--DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           F  +P P+  + +   I ++ A      ++L  + +M   ++ P      +V+ +   L 
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQ 236

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L  GR++H  V   G + +  +  +L   YAK   V  A+ +FD+M   +++ WN+MIS
Sbjct: 237 DLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMIS 296

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY +NG+A+EAI +F+ M +  V PD+ +    ++ACAQ+G ++  R ++E++       
Sbjct: 297 GYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRD 356

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +V ++++LI+M+A+CG+V  AR +FD   + +V+ W+AMI GYG+HG   EA+ L+  M 
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAME 416

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             GV PN+VTF+ +L AC H+G+V+EG   F  M  ++ + P  +H+ C++DL GRAG L
Sbjct: 417 RGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGHL 475

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
           ++AY+ +K  +  +P   VW A+L ACK H++ +LG   A+ L S++P N GHYV LSN+
Sbjct: 476 DQAYEVIK-CMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNL 534

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA A   DRV  VR  M +KGL K VG S VEV  +   F +GDKSHP   EI + ++ +
Sbjct: 535 YAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWI 594

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
             R +E G+V   ++++H+L +EE E +L  HSE++A+A+GL+ T  G  +RI KNLR C
Sbjct: 595 ESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRAC 654

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           V+CH+A K IS   +REI+VRD  RFHHFK G CSC DYW
Sbjct: 655 VNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 139/392 (35%), Positives = 224/392 (57%), Gaps = 8/392 (2%)

Query: 3   NKQPHSPA-YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           N   HS + Y +++ +      L+Q+HA L+V G   S  ++TKL+      G IT+A++
Sbjct: 15  NSGIHSDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQ 74

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P P  F +N +I   S+ N   D+LL Y  M ++ +SP ++TF  ++K+C+ LS 
Sbjct: 75  VFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSH 134

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD--RMPDKSVVAWNSMI 179
           L +GR VH  VF  G+D+D+ VQ  L+  YAK   +  AR VF+   +P++++V+W +++
Sbjct: 135 LQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIV 194

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           S Y QNG   EA+ +F+ MR   V PD    V VL A   L D+  GR +H  +V  GL+
Sbjct: 195 SAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLE 254

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
           +   L  SL  MYA+CG V+ A+ +FD M   N+I W AMISGY  +GY  EA+++FH M
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAG 358
               VRP+ ++  + +SACA  G +++   ++  + R +Y     V     ++D+F + G
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCG 372

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            + E  + V D   ++    VW+AM+    +H
Sbjct: 373 SV-EGARLVFDRTLDRDV-VVWSAMIVGYGLH 402


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/632 (35%), Positives = 352/632 (55%), Gaps = 80/632 (12%)

Query: 26  QVHAHLIVAGYG-RSRSMLTKLLS----------LVCDAGFITYAQRIFFCIPSPDSFLF 74
           Q+H  ++  G G  S S+L  LLS          + C A  +  A+++F  +P  D   +
Sbjct: 169 QMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSA--MVSARKLFDEMPKRDELTW 226

Query: 75  NTLI---IRNSKANFS----------------------------TDSLLFYRRMIVSNIS 103
            T+I   +RN   N +                             ++L   R+M    I 
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD----LHVQAALVNFYAKSNNVDV 159
             + T++ +I +CA++    +G+ VH ++  +  + +    L V  AL+  Y K+N VD 
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDE 346

Query: 160 ARKVFDRMPDKSVVAWNSMISGY-------------------------------EQNGFA 188
           ARK+F  MP ++++ WN+++SGY                                QNGF 
Sbjct: 347 ARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFG 406

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
            E + LF  MR  G  P        L AC+ LG ++ GR +H  +V  G + ++ +  ++
Sbjct: 407 DEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAM 466

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           I+MYA+CG V  A  +F  M  +++++W +MI+  G HG+G +A+ELF +M   GV P+ 
Sbjct: 467 ISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDR 526

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           +TF+ VL+AC+HAGLV++G   F SM + YG+ P  +H+  MVDLF RAG+ + A + V 
Sbjct: 527 ITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYA-RIVI 585

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
           D +  KP   VW A+L  C++H N DLG+E AE L  + P+N G YV+LSNIYA  GR +
Sbjct: 586 DSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWN 645

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
            V  VR +M  + ++K    S +EV+ K ++F + D  HP    +Y+YL++L    ++ G
Sbjct: 646 EVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLG 705

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           Y+P+++  +H++E E++E++L  HSEKLA+ FG+M+  PG T+R+ KN+R+C DCH+A K
Sbjct: 706 YIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFK 765

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           F+S    REIIVRDR RFHHFK G CSC DYW
Sbjct: 766 FMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/510 (23%), Positives = 217/510 (42%), Gaps = 125/510 (24%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P  PA  ++ +A         VHAH+I +G+      L +LL + C +  + YA+++F  
Sbjct: 23  PQDPASFSLARA---------VHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEE 73

Query: 66  IPSPDSFLFNTLI--------------IRNSKANFSTDSLLF------------------ 93
           IP+PD+    TLI              I N    +  DS+ +                  
Sbjct: 74  IPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALE 133

Query: 94  -YRRMIVSNISPSNYTFSAVIKS------------------------CAHLSILN----- 123
            +R M   +  P ++TF++V+ +                        C   S+LN     
Sbjct: 134 LFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSV 193

Query: 124 -LGRA----VHCHVFVSG---YDS----DLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
            + RA    + C   VS    +D     D      ++  Y ++++++ AR+VF+ M +  
Sbjct: 194 YVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENL 253

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
             AWN+MISGY   G  +EA+ L   MR  G+  D  T   +++ACA +G   +G+ VH 
Sbjct: 254 GAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHA 313

Query: 232 FIVGQGLDVN----VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY---- 283
           +I+   L+ N    + ++ +LI +Y +   V +AR+IF  M   N+I W A++SGY    
Sbjct: 314 YILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAG 373

Query: 284 ---------------------------GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
                                        +G+G E ++LF +MR  G  P +  F   L+
Sbjct: 374 RMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALT 433

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC+  G ++ G ++ A +    G    +     M+ ++ + G++  A    + V    P+
Sbjct: 434 ACSVLGALENGRQLHAQLVH-LGYESSLSVGNAMISMYAKCGVVEAA----ESVFVTMPS 488

Query: 377 PAV--WTAMLGACKMHKNFDLGVEVAEHLL 404
             +  W +M+ A   H +    +E+ + +L
Sbjct: 489 VDLVSWNSMIAALGQHGHGVKAIELFDQML 518



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 21/234 (8%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P   A+   L A   L  L+   Q+HA L+  GY  S S+   ++S+    G +  A+ 
Sbjct: 422 EPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAES 481

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +PS D   +N++I    +      ++  + +M+   + P   TF  V+ +C+H  +
Sbjct: 482 VFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGL 541

Query: 122 LNLGRAVHCHVFVSGYDS------DLHVQAALVNFYAKSNNVDVARKVFDRMPDK-SVVA 174
           +  GR    H F S  +S      + H  A +V+ + ++     AR V D MP K     
Sbjct: 542 VEKGR----HYFNSMLESYGITPCEDHY-ARMVDLFCRAGMFSYARIVIDSMPSKPGAPV 596

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           W ++++G   +G     +G+    + F + P +     +L+        D+GRW
Sbjct: 597 WEALLAGCRIHG--NMDLGIEAAEQLFKLMPQNDGTYVLLSNIYA----DVGRW 644


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/576 (38%), Positives = 353/576 (61%), Gaps = 13/576 (2%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCIPSPD 70
            +L+    L  L+++ AH+IV G     ++   +L+   V  +G + YAQ +F  I +P 
Sbjct: 14  TVLQGCNNLTRLKKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQ 73

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS-PSNYTFSAVIKSCAHLSILNLGRAVH 129
           +  +N++I   +++     ++ +Y RM+  ++S P  +TFS  +K+C  +  L     VH
Sbjct: 74  TQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVH 133

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
             +  +GY+ D+ V   LV  Y ++  V++AR VFD MP++ +VAWN+MIS Y Q G+ +
Sbjct: 134 GSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQ 193

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           EA+ +++ MR+  V  D  T V +L++C+ +G +++G  +H     +GL  NV +  +LI
Sbjct: 194 EALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALI 253

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           +MYA+CG++  A E+F+ M   +   W +MI G+G+HG+G EA+  F++M   GVRPN++
Sbjct: 254 DMYAKCGSLDGALEVFNGMPR-DAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSI 312

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
            F+ +L  C+H GLV+EG   F  M  ++ + PG++H+ C+VD++GRAG L +A     +
Sbjct: 313 AFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKAL----E 368

Query: 370 VIGEKP---APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
           +IG+ P    P +W  +L + K+HKN  +G     +L  +   N G  V+L+ IYA A  
Sbjct: 369 IIGDSPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLATIYAGAND 428

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE 486
              V  +R ++ ++G+K   G+S +EV  + + F + DKSHP++  IYQ L+E+  +   
Sbjct: 429 EQGVARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEVTHKATM 488

Query: 487 AGYVPE-SESAMH-ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
           AGYV + S+   H    EE  E S  YHSEKLA+AFGL +T  G ++RIVKNLR+C DCH
Sbjct: 489 AGYVEDKSQFIFHGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDCH 548

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
              KF+S A NR+IIVRDRLRFHHFK G CSC DYW
Sbjct: 549 EFTKFVSRAFNRDIIVRDRLRFHHFKGGLCSCRDYW 584


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/558 (37%), Positives = 345/558 (61%), Gaps = 2/558 (0%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTK-LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNS 82
           L+++H + +  G+ +S  ++    ++     G + YA+ +F  + S     +N LI  + 
Sbjct: 419 LKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHV 478

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
           +  F   +L  Y  M  S + P  +T ++++ +CA L  L+ G+ +H  +  +G++ D  
Sbjct: 479 QNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEF 538

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           +  +LV+ Y +   + +A+  FD M +K++V WN+MI+G+ QN F  +A+ +F+ M    
Sbjct: 539 ICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSK 598

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           + PD  + +  L AC+Q+  + LG+ +H F V   L  +  +  SLI+MYA+CG + +++
Sbjct: 599 IWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQ 658

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
            IFD +     + W  +I+GYG+HG+G +A+ELF  M+  G RP++VTF+A+L+AC HAG
Sbjct: 659 NIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAG 718

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           LV EG      M+  +G+ P +EH+ C+VD+ GRAG LNEA + V + + +KP   +W++
Sbjct: 719 LVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNE-LPDKPDSRIWSS 777

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +L +C+ +++ D+G +VA  LL + P+   +YV++SN YA  G+ D V  +R  M + GL
Sbjct: 778 LLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGL 837

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
           +K  G S +E+  K   F +GD+S   + +I Q   EL  +  + GY P++   +HELEE
Sbjct: 838 QKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEE 897

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           +E+   LR HSEKLA++FGL+ T+ G T+R+ KNLR+CVDCH+AIK +S    REIIVRD
Sbjct: 898 DEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRD 957

Query: 563 RLRFHHFKRGSCSCLDYW 580
             RFHHFK G CSC DYW
Sbjct: 958 NKRFHHFKNGFCSCGDYW 975



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 157/283 (55%), Gaps = 9/283 (3%)

Query: 42  MLTKLLSL--VCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI- 98
           ++T+L+++  +CD+ + +    +F      + FL+N L+    + +   D++  +  MI 
Sbjct: 131 LITRLVTMYSICDSPYDSCL--VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMIS 188

Query: 99  VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158
           ++   P N+T   VIK+C  +  + LG AVH     +   SD+ V  AL+  Y K   V+
Sbjct: 189 LTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVE 248

Query: 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN--LMRDFGVNPDSTTCVCVLAA 216
            A KVFD+MP +++V+WNS++    +NG  +E+ GLF   L  D G+ PD  T V V+  
Sbjct: 249 SAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPL 308

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           CA+ G++ LG   H   +  GL   + + +SL++MY++CG + +AR +FD  +E NVI+W
Sbjct: 309 CARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISW 367

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSAC 318
            +MI GY        A EL  +M+    V+ N VT + VL  C
Sbjct: 368 NSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 154/321 (47%), Gaps = 19/321 (5%)

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG-YDS 139
           N   NF   +L     ++ S+ S        +++ C     + +GR +H  +  S  + +
Sbjct: 71  NQAFNFLQSNL---NDVVSSSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQN 127

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D+ +   LV  Y+  ++   +  VF+    K++  WN+++SGY +N   ++A+ +F  M 
Sbjct: 128 DVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMI 187

Query: 200 DFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
                 PD+ T  CV+ AC  + D+ LG  VH F +   +  +V +  +LI MY + G V
Sbjct: 188 SLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFV 247

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR--AHGVRPNNVTFVAVLS 316
             A ++FD M + N+++W +++     +G   E+  LF  +     G+ P+  T V V+ 
Sbjct: 248 ESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIP 307

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV----KDVIG 372
            CA  G V+ G  VF  +  + GL   ++ +  ++D++ + G L EA        K+VI 
Sbjct: 308 LCARQGEVRLG-MVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDTNEKNVIS 366

Query: 373 EKPAPAVWTAMLGACKMHKNF 393
                  W +M+G     ++F
Sbjct: 367 -------WNSMIGGYSKDRDF 380


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/607 (38%), Positives = 351/607 (57%), Gaps = 43/607 (7%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFI---TYAQRIFFCIPSPD 70
           IL+    L   ++VHA + +    +S  +LTKLL LV     +   +Y + +F  + +P+
Sbjct: 14  ILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPN 73

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
            F +  LI   +     + +L FY  M    +SP ++TFSA+  +CA +    LG  +H 
Sbjct: 74  PFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHA 133

Query: 131 H-VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV----------------- 172
             + + G+ SDL+V  A+++ Y K  ++  AR VFD MP++ V                 
Sbjct: 134 QTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMR 193

Query: 173 --------------VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
                         V W +M++GY QN    +A+ +F  +RD GV  D  T V V++ACA
Sbjct: 194 AARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACA 253

Query: 219 QLGDIDLGRWVHEFIVGQGLDV--NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           QLG      W+ +     G  V  NV++ ++LI+MY++CGNV +A ++F  M E NV ++
Sbjct: 254 QLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSY 313

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           ++MI G+ +HG    A++LF+ M   GV+PN+VTFV VL+AC+HAGLV +G ++FASM +
Sbjct: 314 SSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEK 373

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
            YG+ P  E + CM DL  RAG L +A + V+ +  E    AVW A+LGA  +H N D+ 
Sbjct: 374 CYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDG-AVWGALLGASHVHGNPDVA 432

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQK 456
              ++ L  +EP+N G+Y++LSN YA AGR D V  VR ++ +K LKK+ G+S VE   K
Sbjct: 433 EIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEA--K 490

Query: 457 NYL---FSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHS 513
           N +   F  GD SHP  NEI + L++L+ R +  GY P   S  + + + E+   L  HS
Sbjct: 491 NGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHS 550

Query: 514 EKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGS 573
           EKLALAFGL+ T  G TI+I+KNLR+C DCH  +   S  T R+I+VRD  RFHHF  G+
Sbjct: 551 EKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGA 610

Query: 574 CSCLDYW 580
           CSC ++W
Sbjct: 611 CSCSNFW 617


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/615 (37%), Positives = 348/615 (56%), Gaps = 41/615 (6%)

Query: 6   PHSPAYEAILKAGPRL---KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P++  +  +L +  RL   +P  +VH+H+I  G+     +   L+ L    G +  A+ +
Sbjct: 109 PNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTL 168

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F      D   +NT+I   ++ N    +L  +  M  S I P  +TF A+   C+ L+  
Sbjct: 169 FDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEP 228

Query: 123 NLGRAVHCHVF--VSGYDSDLHVQAALVNFYAKSN------------------------- 155
           N+G+ +H  V+  +   DS++ +++A+V+ YAK                           
Sbjct: 229 NVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMV 288

Query: 156 -------NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
                   ++VARK+F+ M ++ V++W +MISGY Q G   EA+ LF  M   G+ PD  
Sbjct: 289 CGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEV 348

Query: 209 TCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
           T V VL+ACA+LG  DLG R  H++I     + N +L  ++++MYA+CG++  A EIF  
Sbjct: 349 TLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRR 408

Query: 268 MSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           + +       + +MI+G   HG G  A+ +F  + + G++P+ VTFV VL AC H+GL++
Sbjct: 409 VGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIE 468

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           EG ++F SM   YG+ P +EH+ CMVDL GR G L EAY  V+ +  E  +  +W A+L 
Sbjct: 469 EGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANS-VIWRALLS 527

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           AC+ H N  +G    + LL +E ++   YV+LSNI A A + +    VR +M   G++K 
Sbjct: 528 ACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKP 587

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
            G+S +E+    + F   DKSHP   EI   L ++  R + AGYVP +   M +++EEE+
Sbjct: 588 PGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEK 647

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
           E  + YHSEKLALAFGLM  SP  TIRIVKNLR+C DCH A K +S    REI VRD +R
Sbjct: 648 ESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMR 707

Query: 566 FHHFKRGSCSCLDYW 580
           FHHF+ GSCSC+D+W
Sbjct: 708 FHHFRNGSCSCMDFW 722



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/437 (29%), Positives = 227/437 (51%), Gaps = 38/437 (8%)

Query: 8   SPAYEAILKAGPRLKPLQQVHAHLIVAGYGR---SRSMLTKLLSLVCDAGFITYAQRIFF 64
           +P+   +L++    K   Q+HA  IV G      S S L    SL+     + +++ +F 
Sbjct: 9   NPSSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFS 68

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP-SNYTFSAVIKSCAHLSILN 123
            I  P+ F++NT+I   S+++   ++++ Y  MI   I+P +N+TF  ++ SCA LS L 
Sbjct: 69  QIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLE 128

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
            G  VH H+   G++SDL V+ AL++ Y+   N+++AR +FD    + +V++N+MI GY 
Sbjct: 129 PGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYA 188

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG--QGLDVN 241
           +    + A+ LF  M++ G+ PD  T V + + C+ L + ++G+ +H  +    + +D N
Sbjct: 189 EVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSN 248

Query: 242 VVLATSLINM--------------------------------YARCGNVSKAREIFDMMS 269
           ++L +++++M                                YARCG ++ AR++F+ M 
Sbjct: 249 ILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMH 308

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
           E +VI+WTAMISGY   G  +EA+ELF  M A G++P+ VT VAVLSACA  G    G R
Sbjct: 309 ERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKR 368

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
           ++    +             ++D++ + G ++ A +  + V        V+ +M+     
Sbjct: 369 LYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQ 428

Query: 390 HKNFDLGVEVAEHLLSV 406
           H   +  + V   L+S 
Sbjct: 429 HGLGETAITVFRELIST 445


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/561 (38%), Positives = 344/561 (61%), Gaps = 3/561 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  + +H +++  G G    +LT  + +    G I  A+ +F+ +P+ +   +N +I  
Sbjct: 247 LKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISG 306

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
             +     +S   + R++ S+      T  ++++ C+  + L  G+ +H    +  ++S+
Sbjct: 307 CVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILH-GCAIRSFESN 365

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           L +  A+V+ Y+K  ++  A  VF+RM D++V+ W +M+ G  QNG A++A+ LF  M++
Sbjct: 366 LILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQE 425

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G+  +S T V ++ +CA LG +  GR +H  +   G   ++V  T+L++MYA+CG ++ 
Sbjct: 426 EGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINL 485

Query: 261 AREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           A  IF   S   +V+ W +MI+GYGMHG+G +AV ++H+M   G++PN  TF+++LSAC+
Sbjct: 486 AERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACS 545

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H+ LV++G  +F SM +++ + P  +H+ C+VDL  RAG   EA   ++  +  +P  AV
Sbjct: 546 HSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEK-MPFQPGTAV 604

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
             A+L  C+ HKN +LG++ ++ LL+++  NPG Y+MLSNIYA A R D+V+ +R +M  
Sbjct: 605 LEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRN 664

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           +GLKK  GYS VE     + F  GD SHPN  EIY +L+ L      +GYVP++   + +
Sbjct: 665 RGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCVLRD 724

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           ++EE +   L  HSE+LA+AFGL+ T  G  IRI KNLR+C DCH+  K+IS    REII
Sbjct: 725 VDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVCGDCHTVTKYISKIVKREII 784

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           VRD  RFHHF  G CSC DYW
Sbjct: 785 VRDANRFHHFSNGECSCGDYW 805



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 178/361 (49%), Gaps = 4/361 (1%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           ++  HA +I       + + TKL+    D   +  A+ +F     P   L N ++    +
Sbjct: 48  VKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQ 107

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
           +    ++L  +  M   N+   + + +  +K+CA      +G  +       G + +  V
Sbjct: 108 SGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFV 167

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
            +++++F  K   +  A++VFD MP+K VV WNS+I GY Q G    A  LF  M   G+
Sbjct: 168 GSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGI 227

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            P   T   ++ AC  +G++ LG+ +H +++G GL  ++++ TS ++MY++ G++  AR 
Sbjct: 228 KPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARW 287

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +F  M   N+++W AMISG   +G   E+ +LFHR+       +  T V++L  C+    
Sbjct: 288 VFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTAS 347

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           +  G  +     + +     +     +VDL+ + G L +A  FV + + ++     WTAM
Sbjct: 348 LATGKILHGCAIRSFE--SNLILSTAIVDLYSKCGSLKQA-TFVFNRMKDRNV-ITWTAM 403

Query: 384 L 384
           L
Sbjct: 404 L 404



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 18/169 (10%)

Query: 7   HSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF-FC 65
           HS A+   LK G      + +H HL   G+      +T L+ +    G I  A+RIF   
Sbjct: 440 HSCAHLGSLKRG------RSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHG 493

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
             S D  L+N++I           ++  Y +MI   + P+  TF +++ +C+H  ++  G
Sbjct: 494 SISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQG 553

Query: 126 RAVHCHVFVSGYDSDLHVQ------AALVNFYAKSNNVDVARKVFDRMP 168
            ++      +  + D +++      A LV+  +++   + A+ + ++MP
Sbjct: 554 ISL-----FNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMP 597


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/566 (39%), Positives = 338/566 (59%), Gaps = 32/566 (5%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           ++ L+   G +  A ++F  +   D   ++ LI    +     ++L+ +  M  + +   
Sbjct: 244 MIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLD 303

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYA------------- 152
                +V+ +CAHLSI+  G+ +H  V   G +S +++Q AL++ Y+             
Sbjct: 304 EVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFN 363

Query: 153 ------------------KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
                             K  +V+ AR +FD MP+K +V+W+++ISGY Q+    E + L
Sbjct: 364 GSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLAL 423

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           F+ M+   + PD T  V V++AC  L  +D G+WVH +I   GL VNV+L T+L++MY +
Sbjct: 424 FHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMK 483

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CG V  A E+F+ M E  V +W A+I G  ++G    ++++F  M+ +GV PN +TF+ V
Sbjct: 484 CGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGV 543

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L AC H GLV EG   FASM +++G+ P V+H+ CMVDL GRAGLLNEA K ++  +   
Sbjct: 544 LGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIES-MPMA 602

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P  A W A+LGACK H + ++G  V   L+ ++P++ G +V+LSNI+A  G  + V  VR
Sbjct: 603 PDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVR 662

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
            +M Q+G+ K  G S +E +   + F  GDK+HP  N++   L+E+  R +  GY P++ 
Sbjct: 663 GMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTN 722

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
               +++EEE+E +L  HSEKLA+AFGL+  SP   IRI+KNLR+C DCH+A K IS A 
Sbjct: 723 EVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAY 782

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
            REI+VRDR RFH+FK G+CSC+DYW
Sbjct: 783 AREIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 221/459 (48%), Gaps = 98/459 (21%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFI--TYAQRIFFCIPSPDSFLFNTLI 78
           LK   ++ + +I+ G+       ++LL    D+ FI   Y+ +IF  I + + F++NT++
Sbjct: 54  LKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMM 113

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
               ++N +  +LL Y+ M+ +N+ P NYT+  V+++CA   +   G+ +H HV   G+D
Sbjct: 114 RAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFD 173

Query: 139 SDLHVQAALVNFYA-------------------------------KSNNVDVARKVFDRM 167
           SD++VQ  L+N YA                               K  +V+ A+ +FD+M
Sbjct: 174 SDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQM 233

Query: 168 PDKSVVA-------------------------------WNSMISGYEQNGFAKEAIGLFN 196
           P +++VA                               W+++ISGYEQNG  +EA+ +F 
Sbjct: 234 PQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFI 293

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA--- 253
            M   G+  D    V VL+ACA L  +  G+ +H  ++  G++  V L  +LI+MY+   
Sbjct: 294 EMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSG 353

Query: 254 ----------------------------RCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
                                       +CG+V KAR +FD+M E ++++W+A+ISGY  
Sbjct: 354 EIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQ 413

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           H   +E + LFH M+   +RP+    V+V+SAC H   + +G  V A +R+  GL   V 
Sbjct: 414 HDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKN-GLKVNVI 472

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
               ++D++ + G +  A +    +  E+   + W A++
Sbjct: 473 LGTTLLDMYMKCGCVENALEVFNGM--EEKGVSSWNALI 509



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 111/281 (39%), Gaps = 53/281 (18%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P      +++ A   L  L Q   VHA++   G   +  + T LL +    G +  A  
Sbjct: 433 RPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALE 492

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +       +N LII  +       SL  +  M  + + P+  TF  V+ +C H+ +
Sbjct: 493 VFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGL 552

Query: 122 LNLGRAVHCHVFVS-----GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
           ++ GR   CH F S     G + ++     +V+   ++  ++ A K+ + MP        
Sbjct: 553 VDEGR---CH-FASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMP-------- 600

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
                                     + PD  T   +L AC + GD ++G  V   ++  
Sbjct: 601 --------------------------MAPDVATWGALLGACKKHGDTEMGERVGRKLIEL 634

Query: 237 GLD---VNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
             D    +V+L+    N++A  G+     E+  MM +  V+
Sbjct: 635 QPDHDGFHVLLS----NIFASKGDWEDVLEVRGMMKQQGVV 671


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/573 (36%), Positives = 350/573 (61%), Gaps = 5/573 (0%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y +++ A  R + L   + +HAHL  + +  S  +   L+ L C  G +  A+R+F  +P
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
           + D   + +LI   ++ +   ++L     M+     P+ +TF++++K+    +   +G  
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H       +  D++V +AL++ YA+   +D+A  VFD++  K+ V+WN++I+G+ + G 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            +  + +F  M+  G      T   V +A A +G ++ G+WVH  ++  G  ++  +  +
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           +++MYA+ G++  AR++FD + + +V+ W +M++ +  +G G EAV  F  MR  GV  N
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            +TF+++L+AC+H GLV+EG + F  M +EY L P ++H+V +VDL GRAGLLN+A  F+
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYF-DMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
              +  KP  AVW A+LG+C+MHKN  +G   A+H+  ++P++ G  V+L NIYA  G+ 
Sbjct: 426 FK-MPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQW 484

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           D    VR +M   G+KK    S VE++   ++F   D +HP + EIY+  +E+  + R+A
Sbjct: 485 DAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKA 544

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           GYVP ++  +  ++E+ER+  L+YHSEK+ALAF L+    G TIRI+KN+R+C DCHSA 
Sbjct: 545 GYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAF 604

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           ++IS    REI+VRD  RFHHF  GSCSC DYW
Sbjct: 605 RYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/564 (37%), Positives = 344/564 (60%), Gaps = 6/564 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDA---GFITYAQRIFFCIPSPDSFLFNTL 77
           L+ L Q+ A+ I   +    S + KL++   ++     ++YA+ +F  +  PD  +FN++
Sbjct: 42  LRELMQIQAYAI-KSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSM 100

Query: 78  IIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
               S+     +    +  ++   I P NYTF +++K+CA    L  GR +HC     G 
Sbjct: 101 ARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGL 160

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
           D +++V   L+N Y +  +VD AR VFDR+ +  VV +N+MI+GY +     EA+ LF  
Sbjct: 161 DDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFRE 220

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M+   + P+  T + VL++CA LG +DLG+W+H++         V + T+LI+M+A+CG+
Sbjct: 221 MQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGS 280

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           +  A  IF+ M   +  AW+AMI  Y  HG   +++ +F RMR+  V+P+ +TF+ +L+A
Sbjct: 281 LDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNA 340

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           C+H G V+EG + F+ M  ++G++P ++H+  MVDL  RAG L +AY+F+ D +   P P
Sbjct: 341 CSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFI-DKLPISPTP 399

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
            +W  +L AC  H N DL  +V+E +  ++  + G YV+LSN+YA   + + V+ +R +M
Sbjct: 400 MLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVM 459

Query: 438 IQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM 497
             +   K  G S++EV+   + F  GD     T ++++ LDE++   + +GYVP++   +
Sbjct: 460 KDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVV 519

Query: 498 H-ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNR 556
           H  + ++E+E +LRYHSEKLA+ FGL+ T PG TIR+VKNLR+C DCH+A K IS+   R
Sbjct: 520 HANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGR 579

Query: 557 EIIVRDRLRFHHFKRGSCSCLDYW 580
           ++++RD  RFHHF+ G CSC D+W
Sbjct: 580 KVVLRDVQRFHHFEDGKCSCGDFW 603


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/576 (38%), Positives = 348/576 (60%), Gaps = 6/576 (1%)

Query: 10  AYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
            Y+A+L A      L+  Q+VHAH+I   Y  +  + T+LL        +  A+++   +
Sbjct: 54  GYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEM 113

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P  +   +  +I R S+   S+++L  +  M+ S+  P+ +TF+ V+ SC   S L LG+
Sbjct: 114 PEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGK 173

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H  +    YDS + V ++L++ YAK+  +  AR++F+ +P++ VV+  ++I+GY Q G
Sbjct: 174 QIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLG 233

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
             +EA+ +F+ +   G++P+  T   +L A + L  +D G+  H  ++ + L    VL  
Sbjct: 234 LDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN 293

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VR 305
           SLI+MY++CGN+S AR +FD M E   I+W AM+ GY  HG G E +ELF  MR    V+
Sbjct: 294 SLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVK 353

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
           P+ VT +AVLS C+H  +   G  +F  M   EYG  PG EH+ C+VD+ GRAG ++EA+
Sbjct: 354 PDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAF 413

Query: 365 KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
           +F+K  +  KP   V  ++LGAC++H + D+G  V   L+ +EPEN G+YV+LSN+YA A
Sbjct: 414 EFIKR-MPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASA 472

Query: 425 GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRC 484
           GR   V  VR +M+QK + K  G S ++ +Q  + F   D++HP   E+   + E+  + 
Sbjct: 473 GRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKM 532

Query: 485 REAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
           ++AGYVP+    +++++EE++E  L  HSEKLAL FGL+ T  G+ IR+ KNLR+CVDCH
Sbjct: 533 KQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCH 592

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +  K  S    RE+ +RD+ RFH    G CSC DYW
Sbjct: 593 NFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/567 (40%), Positives = 337/567 (59%), Gaps = 8/567 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSM-LTKLLSL--VCDAGFITYAQRIFFCIPSPDSFLFNTL 77
           L    Q+HA ++ +   + ++  LT L +   +  AG +TYA  I   + + +SF  NT+
Sbjct: 6   LSQAMQLHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTM 65

Query: 78  IIRNSKANFSTDSLLFYRRMIVSNISP--SNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
           I   S+    T +L  +  M+    SP    +T+  ++KSCA L    +G+ +H  ++ S
Sbjct: 66  IRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKS 125

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G +SD +V   L++ Y+       A KVF +M D+ VV+W SMI G+  +  A EAI LF
Sbjct: 126 GLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLF 185

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             M + GV P+  T V VL ACA  G + +GR V   I  + + +   + T+LI+MYA+C
Sbjct: 186 EEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKC 245

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G++  AR++FD +   +V AWTAMISG   HG   EAV LF +M + G+RP+  T  AVL
Sbjct: 246 GSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVL 305

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
           SAC +AG   EG   F SM  +YG+ P ++H+ CMVDL  R G L+EA +F++ +  E P
Sbjct: 306 SACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIE-P 364

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEH--LLSVEPENPGHYVMLSNIYALAGRMDRVEVV 433
              +W  ++ A K+H + D   ++ +   LL ++ ++ G YV+L N+YA AG+      +
Sbjct: 365 DVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKM 424

Query: 434 RNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPES 493
           R +M QKGL K  G S +EVD   + F+ GD  H    +IY  LDE+  R +  GY P+ 
Sbjct: 425 RELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKL 484

Query: 494 ESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVA 553
              + E++ +E+ + LR+HSEKLA+AFGL++TSPG  IRIVKNLR C DCHS +K IS  
Sbjct: 485 SEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSCEDCHSVLKLISKI 544

Query: 554 TNREIIVRDRLRFHHFKRGSCSCLDYW 580
             ++IIVRDR+RFHHF  G CSC DYW
Sbjct: 545 YQQDIIVRDRIRFHHFINGDCSCKDYW 571


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/611 (36%), Positives = 348/611 (56%), Gaps = 53/611 (8%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVC-DAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           + L+Q+HA  I  G  +      +++      +  I YA+ +F  +P P+ F +NT++  
Sbjct: 33  RDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRI 92

Query: 81  NSKAN---FSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
            ++ N     +++L+ +  M+    + P+ +TF +V+K+CA  S L  G+ +H  +   G
Sbjct: 93  LAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFG 152

Query: 137 YDSDLHVQAALVNFYA-------------------------------------------- 152
           +  D  V + LV  Y                                             
Sbjct: 153 FHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMID 212

Query: 153 ---KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
              +  ++  A+ +FD MP +SVV+WN MISGY QNG   EAI LF  M+   ++P+  T
Sbjct: 213 GQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVT 272

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
            V VL A A++G ++LG+W+H +     ++++ VL ++L++MY++CG++ KA ++F+ + 
Sbjct: 273 LVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLP 332

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
           + N I W+A+I  + MHG   +A+  FH M   GV PN+V ++ +LSAC+HAGLV+EG  
Sbjct: 333 KRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRS 392

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
            F+ M +  GL P +EH+ CMVDL GRAG L EA + ++++  E P   +W A+LGACKM
Sbjct: 393 FFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIE-PDDVIWKALLGACKM 451

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           HKN  +G  VAE L+ + P + G YV LSN+YA  G  + V  VR  M    ++K  G S
Sbjct: 452 HKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCS 511

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
            +E+    + F + D SH    EI   L E+  + R  GY P +       +E+ER  +L
Sbjct: 512 WIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARAL 571

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
           +YHSEK+A+AFGL+ T+P   ++IVKNLR+C DCH+++K IS+   R+IIVRDR RFH F
Sbjct: 572 QYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQF 631

Query: 570 KRGSCSCLDYW 580
           + GSCSC+DYW
Sbjct: 632 EHGSCSCMDYW 642


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/521 (40%), Positives = 320/521 (61%), Gaps = 1/521 (0%)

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           +++F  +   D+  +NTLI+  ++     ++L   R M      P  +T S V+   A  
Sbjct: 124 RKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAEC 183

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
           + +  G  VH +   +G+D+D+ V ++L++ YA    +D + KVFD   D   V WNSM+
Sbjct: 184 ADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSML 243

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           +GY QNG  +EA+G+F  M   GV P   T   ++ A   L  + LG+ +H +++    +
Sbjct: 244 AGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFN 303

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            N+ +++SLI+MY +CGNV  AR +F+ +   ++++WTAMI GY +HG  TEA  LF RM
Sbjct: 304 DNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERM 363

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
               V+PN++TF+AVL+AC+HAGLV  G + F SM  +YG +P +EH   + D  GRAG 
Sbjct: 364 ELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGD 423

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L+EAY F+ + +  KP  +VW+ +L AC++HKN  L  EVA+ +  +EP++ G +V+LSN
Sbjct: 424 LDEAYNFISE-MKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSN 482

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           +Y+ +GR +    +R  M  KG+KK    S +EV  K ++F   DKSHP  + I   L+ 
Sbjct: 483 MYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNV 542

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
              +    GYVP  E  + ++EEE++   L  HSEKLA+ FG++ T PG TIR++KNLR+
Sbjct: 543 YSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRV 602

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CVDCH A KFIS    REI+VRD  RFH FK G+CSC D+W
Sbjct: 603 CVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 160/343 (46%), Gaps = 25/343 (7%)

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
           P S+ +   +  +        SL    R  V+  S    +  A +KSCA L +  L  ++
Sbjct: 12  PPSWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASL 71

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAK--------------------SNNVDVARKVFDRMP 168
           H     SG  +D     AL+N   K                    S   +  RKVFD M 
Sbjct: 72  HALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEML 131

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           ++  V+WN++I G  ++   +EA+ +   M   G  PD+ T   VL   A+  DI  G  
Sbjct: 132 ERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMV 191

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           VH + +  G D +V + +SLI+MYA C  +  + ++FD  S+ + + W +M++GY  +G 
Sbjct: 192 VHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGS 251

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPGVEHH 347
             EA+ +F RM   GVRP  VTF +++ A  +  L++ G ++ A + R  +     +   
Sbjct: 252 VEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFN--DNIFIS 309

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
             ++D++ + G ++ A +    +  + P    WTAM+    +H
Sbjct: 310 SSLIDMYCKCGNVDIARRVFNGI--QSPDIVSWTAMIMGYALH 350



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 84/159 (52%), Gaps = 6/159 (3%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+HA+LI A +  +  + + L+ + C  G +  A+R+F  I SPD   +  +I+  +  
Sbjct: 291 KQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALH 350

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG-RAVHCHVFVSGYDSDLHV 143
             +T++ + + RM + N+ P++ TF AV+ +C+H  +++ G +  +      G+   L  
Sbjct: 351 GPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEH 410

Query: 144 QAALVNFYAKSNNVDVARKVFDRM---PDKSVVAWNSMI 179
            AAL +   ++ ++D A      M   P  SV  W++++
Sbjct: 411 CAALADTLGRAGDLDEAYNFISEMKIKPTSSV--WSTLL 447


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/540 (40%), Positives = 341/540 (63%), Gaps = 8/540 (1%)

Query: 45  KLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSL-LFYRRMIVSNIS 103
           +L+S+    G+   AQR+F  +P+ D   +N+L+   S   +    L  F R    S   
Sbjct: 102 RLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQ 161

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P+  T  +V+ +CA +  L+ G+++H  V   G      V  +L+N Y K   +D A ++
Sbjct: 162 PNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQL 221

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F+ MP +S+V+WNSM+  +  NG+A++ + LFNLM+  G+NPD  T V +L AC   G  
Sbjct: 222 FEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTG-- 279

Query: 224 DLGRW---VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
            LGR    +H +I   G + ++++AT+L+N+YA+ G ++ + +IF+ + + + IAWTAM+
Sbjct: 280 -LGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAML 338

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GY +H  G EA++LF  M   GV  ++VTF  +LSAC+H+GLV+EG + F  M + Y +
Sbjct: 339 AGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRV 398

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P ++H+ CMVDL GR+G L +AY+ +K +  E P+  VW A+LGAC+++ N +LG EVA
Sbjct: 399 EPRLDHYSCMVDLLGRSGRLEDAYELIKSMPME-PSSGVWGALLGACRVYGNVELGKEVA 457

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           E LLS++P +  +Y+MLSNIY+ AG       VR +M ++ L ++ G S +E   K + F
Sbjct: 458 EQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRF 517

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
            +GD+ HP ++EI+  L+EL+ + REAG  P++E  +H+++EE +   +  HSEKLA+AF
Sbjct: 518 VVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAF 577

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+ T  G+ + I KNLR+C DCHS  KF S+   R II+RD  RFHHF  G CSC DYW
Sbjct: 578 GLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 190/378 (50%), Gaps = 37/378 (9%)

Query: 95  RRMIVSNI---SPSNYTFSAV------IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
           RR+  +N+   SP    +S V      I SC  +S  +   A+H  V  S   SD  +  
Sbjct: 45  RRICNANLFQLSPPFQVYSIVQSLVFAISSCTSVSYCS---AIHARVIKSLNYSDGFIGD 101

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR-DFGVN 204
            LV+ Y K    + A+++FD MP+K +V+WNS++SG    G+    +  F  MR + G  
Sbjct: 102 RLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQ 161

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T + V++ACA +G +D G+ +H  +V  G+     +  SLINMY + G +  A ++
Sbjct: 162 PNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQL 221

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ M   ++++W +M+  +  +GY  + ++LF+ M+  G+ P+  T VA+L AC   GL 
Sbjct: 222 FEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLG 281

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           ++   + A + +  G    +     +++L+ + G LN +    +++  +      WTAML
Sbjct: 282 RQAESIHAYIHR-CGFNADIIIATALLNLYAKLGRLNASEDIFEEI--KDRDRIAWTAML 338

Query: 385 GACKMH-------KNFDL----GVEVAE----HLLS------VEPENPGHYVMLSNIYAL 423
               +H       K FDL    GVEV      HLLS      +  E   ++ ++S +Y +
Sbjct: 339 AGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRV 398

Query: 424 AGRMDRVEVVRNIMIQKG 441
             R+D    + +++ + G
Sbjct: 399 EPRLDHYSCMVDLLGRSG 416



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 165/342 (48%), Gaps = 14/342 (4%)

Query: 4   KQPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           +QP+     +++ A   +  L +   +H  ++  G      ++  L+++    GF+  A 
Sbjct: 160 RQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAAS 219

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           ++F  +P      +N++++ ++   ++   +  +  M  + I+P   T  A++++C    
Sbjct: 220 QLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTG 279

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
           +     ++H ++   G+++D+ +  AL+N YAK   ++ +  +F+ + D+  +AW +M++
Sbjct: 280 LGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLA 339

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY  +   +EAI LF+LM   GV  D  T   +L+AC+  G ++ G+   E I+ +   V
Sbjct: 340 GYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFE-IMSEVYRV 398

Query: 241 NVVLA--TSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISG---YGMHGYGTEAVE 294
              L   + ++++  R G +  A E+   M  E +   W A++     YG    G E  E
Sbjct: 399 EPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAE 458

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
               +     R N +    + SA   AGL ++  +V A M++
Sbjct: 459 QLLSLDPSDHR-NYIMLSNIYSA---AGLWRDASKVRALMKE 496


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/571 (39%), Positives = 349/571 (61%), Gaps = 13/571 (2%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAG----FITYAQRIFFCIPSP-DSFLFN 75
           L+ L Q+HA  + AG     +++T+LL+L    G     + YA+++F  +  P D+  +N
Sbjct: 38  LRGLAQLHAAAVKAGLAAHPALVTRLLTLCTGPGAGPAHLAYARQVFDRVTQPSDAVWYN 97

Query: 76  TLIIRNSKANFSTDS-----LLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
           TL+   ++++ S+ S     +  + RM+   ++P  YTF +++K+CA       GR  H 
Sbjct: 98  TLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEHGRQAHA 157

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
                G     +V+  L+N YA+  +   AR  F R     VV++N+MI+   ++    E
Sbjct: 158 VAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGE 217

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ LF  M+  G+NP   T + VL+ACA LG + LGRW+H+++   GL   V ++T+L++
Sbjct: 218 ALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVD 277

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MYA+CG++  A  +F  M   +  AW+ MI  Y  HGYG EA+ LF  M+  G++P+++T
Sbjct: 278 MYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDIT 337

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           F+ +L AC+H+GLV EG R F  M+ ++G++PG++H+ C+ DL  R+G L  AYKF+ D 
Sbjct: 338 FLGLLYACSHSGLVSEGLRYFDDMK-DHGIVPGIKHYGCVTDLLARSGQLERAYKFI-DE 395

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
           +   P P +W  +L AC  H + +LG  V E +L ++  + G YV+ SN+ A  G  + +
Sbjct: 396 LPINPTPILWRTLLSACGGHGDVELGKRVFERILELDDSHGGDYVIFSNLCANTGYWEEM 455

Query: 431 EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
             VR +M  KG+ K  G S++E+D   + F  GD  HP + E  + +DE++ + +  GY+
Sbjct: 456 NRVRKLMSDKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYI 515

Query: 491 PESESAMH-ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKF 549
           P++    H E+ EEE+  SL+YHSEKLA+AFGL+ T+PG T+R+VKNLR+C DCHS  KF
Sbjct: 516 PDTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKF 575

Query: 550 ISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +S+  NR II+RD  RFHHF+RG CSC DYW
Sbjct: 576 VSMVFNRRIILRDLNRFHHFERGICSCGDYW 606


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/560 (37%), Positives = 344/560 (61%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L  L+++H + +   +  +  +    ++     G ++YAQR+F  I S     +N LI  
Sbjct: 411 LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 470

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
           ++++N    SL  + +M +S + P ++T  +++ +C+ L  L LG+ VH  +  +  + D
Sbjct: 471 HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 530

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           L V  ++++ Y     +   + +FD M DKS+V+WN++I+GY QNGF   A+G+F  M  
Sbjct: 531 LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 590

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
           +G+     + + V  AC+ L  + LGR  H + +   L+ +  +A SLI+MYA+ G++++
Sbjct: 591 YGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQ 650

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           + ++F+ + E +  +W AMI GYG+HG   EA++LF  M+  G  P+++TF+ VL+AC H
Sbjct: 651 SSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNH 710

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
           +GL+ EG R    M+  +GL P ++H+ C++D+ GRAG L++A + V + + E+    +W
Sbjct: 711 SGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIW 770

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
            ++L +C++H+N ++G +VA  L  +EPE P +YV+LSN+YA  G+ + V  VR  M + 
Sbjct: 771 KSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEM 830

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
            L+K  G S +E+++K + F +G++      EI      L  +  + GY P++ S  H+L
Sbjct: 831 SLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDL 890

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
            EEE+   LR HSEKLAL +GL++TS G TIR+ KNLR+CVDCH+A K IS    REI+V
Sbjct: 891 SEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVV 950

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RD  RFHHFK G CSC DYW
Sbjct: 951 RDNKRFHHFKNGVCSCGDYW 970



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 181/337 (53%), Gaps = 12/337 (3%)

Query: 14  ILKAGPRLKPLQQVHA-HLIVAGYGRSRS---MLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           +L+A  + K ++     H +V+G  R R+   + T+++++    G    ++ +F  + S 
Sbjct: 90  LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSK 149

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
           + F +N +I   S+     + L  +  MI  +++ P ++T+  VIK+CA +S + +G AV
Sbjct: 150 NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAV 209

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H  V  +G   D+ V  ALV+FY     V  A ++FD MP++++V+WNSMI  +  NGF+
Sbjct: 210 HGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFS 269

Query: 189 KEAIGLFNLMR----DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           +E+  L   M     D    PD  T V VL  CA+  +I LG+ VH + V   LD  +VL
Sbjct: 270 EESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVL 329

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG- 303
             +L++MY++CG ++ A+ IF M +  NV++W  M+ G+   G      ++  +M A G 
Sbjct: 330 NNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGE 389

Query: 304 -VRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEY 338
            V+ + VT +  +  C H   +     +   S++QE+
Sbjct: 390 DVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF 426



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 174/348 (50%), Gaps = 7/348 (2%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV--SNIS 103
           L+ +    G IT AQ IF    + +   +NT++   S    +  +    R+M+    ++ 
Sbjct: 333 LMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVK 392

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
               T    +  C H S L   + +HC+     +  +  V  A V  YAK  ++  A++V
Sbjct: 393 ADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRV 452

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F  +  K+V +WN++I G+ Q+   + ++     M+  G+ PDS T   +L+AC++L  +
Sbjct: 453 FHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSL 512

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
            LG+ VH FI+   L+ ++ +  S++++Y  CG +   + +FD M + ++++W  +I+GY
Sbjct: 513 RLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGY 572

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
             +G+   A+ +F +M  +G++   ++ + V  AC+    ++ G    A   +   LL  
Sbjct: 573 LQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKH--LLED 630

Query: 344 VEHHVC-MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
                C ++D++ + G + ++ K    +  ++ + A W AM+    +H
Sbjct: 631 DAFIACSLIDMYAKNGSITQSSKVFNGL--KEKSTASWNAMIMGYGIH 676


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/527 (41%), Positives = 321/527 (60%), Gaps = 17/527 (3%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   +  +I   S+   S ++L  +R+MI S   P+  T  +V+ +CA L   + G  +H
Sbjct: 327 DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIH 386

Query: 130 CHVF----------VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNS 177
            +              G D DL V  AL++ Y+K  +   AR +FD +P  +++VV W  
Sbjct: 387 AYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 446

Query: 178 MISGYEQNGFAKEAIGLFNLM--RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           MI G+ Q G + +A+ LF  M    +GV P++ T  C+L ACA L  I +G+ +H +++ 
Sbjct: 447 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 506

Query: 236 --QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
             Q       +A  LINMY++CG+V  AR +FD MS+ + I+WT+M++GYGMHG G+EA+
Sbjct: 507 HHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 566

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           ++F +MR  G  P+++TF+ VL AC+H G+V +G   F SM  +YGL P  EH+   +DL
Sbjct: 567 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDL 626

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
             R G L++A+K VKD+  E P   VW A+L AC++H N +L       L+ +  EN G 
Sbjct: 627 LARFGRLDKAWKTVKDMPME-PTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGS 685

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           Y ++SNIYA AGR   V  +R++M + G+KK  G S V+  +    F +GD+SHP + +I
Sbjct: 686 YTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQI 745

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           Y  L+ L+ R +  GYVPE+  A+H+++EEE+   L  HSEKLALA+GL+ T PG  IRI
Sbjct: 746 YALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRI 805

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCHSA  +IS   + EI+VRD  RFHHFK GSCSC  YW
Sbjct: 806 TKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 176/403 (43%), Gaps = 59/403 (14%)

Query: 40  RSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV 99
           RS+ T +++     G   YA  +   +    +  +N LI  + K      ++    RM+ 
Sbjct: 51  RSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR 110

Query: 100 SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV 159
           +     ++T   V+K+C  L     G A H  +  +G++S++ +  ALV  Y++  +++ 
Sbjct: 111 AGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEE 170

Query: 160 ARKVFDRMPDK---SVVAWNSMISGYEQNGFAKEAIGLFNLM------RDFGVNPDSTTC 210
           A  +FD +  +    V++WNS++S + ++  A  A+ LF+ M      +      D  + 
Sbjct: 171 ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISI 230

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           V +L AC  L  +   + VH   +  G  ++V +  +LI+ YA+CG +  A ++F+MM  
Sbjct: 231 VNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEF 290

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAH---------------------------- 302
            +V++W AM++GY   G    A ELF  MR                              
Sbjct: 291 KDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNV 350

Query: 303 -------GVRPNNVTFVAVLSACAHAGLVQEGHRVFA--------SMRQEYGLLPGVEHH 347
                  G  PN VT ++VLSACA  G   +G  + A        ++  ++G   G +  
Sbjct: 351 FRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFG---GEDED 407

Query: 348 V----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           +     ++D++ +      A     D+  E+     WT M+G 
Sbjct: 408 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGG 450


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/540 (40%), Positives = 341/540 (63%), Gaps = 8/540 (1%)

Query: 45  KLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSL-LFYRRMIVSNIS 103
           +L+S+    G+   AQR+F  +P+ D   +N+L+   S   +    L  F R    S   
Sbjct: 159 RLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQ 218

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P+  T  +V+ +CA +  L+ G+++H  V   G      V  +L+N Y K   +D A ++
Sbjct: 219 PNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQL 278

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F+ MP +S+V+WNSM+  +  NG+A++ + LFNLM+  G+NPD  T V +L AC   G  
Sbjct: 279 FEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTG-- 336

Query: 224 DLGRW---VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
            LGR    +H +I   G + ++++AT+L+N+YA+ G ++ + +IF+ + + + IAWTAM+
Sbjct: 337 -LGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAML 395

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GY +H  G EA++LF  M   GV  ++VTF  +LSAC+H+GLV+EG + F  M + Y +
Sbjct: 396 AGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRV 455

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P ++H+ CMVDL GR+G L +AY+ +K +  E P+  VW A+LGAC+++ N +LG EVA
Sbjct: 456 EPRLDHYSCMVDLLGRSGRLEDAYELIKSMPME-PSSGVWGALLGACRVYGNVELGKEVA 514

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           E LLS++P +  +Y+MLSNIY+ AG       VR +M ++ L ++ G S +E   K + F
Sbjct: 515 EQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRF 574

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
            +GD+ HP ++EI+  L+EL+ + REAG  P++E  +H+++EE +   +  HSEKLA+AF
Sbjct: 575 VVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAF 634

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+ T  G+ + I KNLR+C DCHS  KF S+   R II+RD  RFHHF  G CSC DYW
Sbjct: 635 GLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 179/351 (50%), Gaps = 28/351 (7%)

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           I SC  +S  +   A+H  V  S   SD  +   LV+ Y K    + A+++FD MP+K +
Sbjct: 129 ISSCTSVSYCS---AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDL 185

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           V+WNS++SG    G+    +  F  MR + G  P+  T + V++ACA +G +D G+ +H 
Sbjct: 186 VSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHG 245

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
            +V  G+     +  SLINMY + G +  A ++F+ M   ++++W +M+  +  +GY  +
Sbjct: 246 VVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEK 305

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
            ++LF+ M+  G+ P+  T VA+L AC   GL ++   + A + +  G    +     ++
Sbjct: 306 GMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR-CGFNADIIIATALL 364

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH-------KNFDL----GVEVA 400
           +L+ + G LN +    +++  +      WTAML    +H       K FDL    GVEV 
Sbjct: 365 NLYAKLGRLNASEDIFEEI--KDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVD 422

Query: 401 E----HLLS------VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
                HLLS      +  E   ++ ++S +Y +  R+D    + +++ + G
Sbjct: 423 HVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSG 473



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 165/342 (48%), Gaps = 14/342 (4%)

Query: 4   KQPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           +QP+     +++ A   +  L +   +H  ++  G      ++  L+++    GF+  A 
Sbjct: 217 RQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAAS 276

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           ++F  +P      +N++++ ++   ++   +  +  M  + I+P   T  A++++C    
Sbjct: 277 QLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTG 336

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
           +     ++H ++   G+++D+ +  AL+N YAK   ++ +  +F+ + D+  +AW +M++
Sbjct: 337 LGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLA 396

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY  +   +EAI LF+LM   GV  D  T   +L+AC+  G ++ G+   E I+ +   V
Sbjct: 397 GYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFE-IMSEVYRV 455

Query: 241 NVVLA--TSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISG---YGMHGYGTEAVE 294
              L   + ++++  R G +  A E+   M  E +   W A++     YG    G E  E
Sbjct: 456 EPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAE 515

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
               +     R N +    + SA   AGL ++  +V A M++
Sbjct: 516 QLLSLDPSDHR-NYIMLSNIYSA---AGLWRDASKVRALMKE 553


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/567 (40%), Positives = 340/567 (59%), Gaps = 12/567 (2%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKL---LSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+Q+HA L+     R+  +       L+L      I Y+ R+F    +P     NT+I  
Sbjct: 27  LRQIHAVLLRTSLIRNSDVFHHFFSRLALSLIPRDINYSCRVFSQRLNPTLSHCNTMIRA 86

Query: 81  NSKANFSTDSLLFYRRMIVSNIS-PSN-YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
            S +    +    +R  +  NIS P+N  + S  +K C     L  G  +H  +F  G+ 
Sbjct: 87  FSLSQTPCEGFRLFR-ALRRNISFPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFL 145

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
           SD  +   L++ Y+   N   A KVFD +P +  V+WN +IS Y +N   ++ + LF+ M
Sbjct: 146 SDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDVLVLFDKM 205

Query: 199 R---DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
           +   D  V PD+ TC+  L ACA LG +D G+ VH+FI   GL   + L+ +L++MY+RC
Sbjct: 206 KNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRC 265

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G++ KA E+F+ M E NV++WTAMISG  M+G+G EA+E F+ M   G+ P   T   +L
Sbjct: 266 GSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLL 325

Query: 316 SACAHAGLVQEGHRVFASMRQ-EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           SAC+H+GLV EG   F  MR  E+ + P + H+ C+VDL GRA LL++AY  +K  +  K
Sbjct: 326 SACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIKS-MEMK 384

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P   +W  +LGAC++H N +LG  V  HL+  + E  G YV+L N Y+  G+ ++V  +R
Sbjct: 385 PDSTIWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGDYVLLLNTYSSVGKWEKVTELR 444

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
           ++M +K ++ + G S +E+    + F + D SHP   EIY+ L E+  + + AGYV E  
Sbjct: 445 SLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEIT 504

Query: 495 SAMHELE-EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVA 553
           S +H L+ EEE+ Y+LRYHSEKLA+AFG++ T P  TIR+ KNLR CVDCH+  KF+S  
Sbjct: 505 SELHNLDSEEEKGYALRYHSEKLAIAFGILVTPPETTIRVTKNLRTCVDCHNFAKFVSDV 564

Query: 554 TNREIIVRDRLRFHHFKRGSCSCLDYW 580
            +R +IVRDR RFHHFK GSCSC D+W
Sbjct: 565 YDRVVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/563 (37%), Positives = 339/563 (60%), Gaps = 4/563 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           ++  +Q HA ++  G        + L++   + D G + YA  IF  +  P SF FNT++
Sbjct: 1   MEEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMM 60

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
             + K   + ++L+ Y+ M    + P N+T+  ++K+CA L  +  G  VH H+   G +
Sbjct: 61  RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 120

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
           +D+ VQ +L++ Y K   + V   VF++M ++SV +W+++I+ +   G   + + L   M
Sbjct: 121 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 180

Query: 199 RDFGV-NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
            + G    + +  V VL+AC  LG +DLGR VH F++     +NV++ TSLI MY +CG 
Sbjct: 181 SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGX 240

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           + K   +F  M++ N ++++ MISG  MHGYG E + +F  M   G+ P+++ +V VL+A
Sbjct: 241 LYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNA 300

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           C+HAGLVQEG + F  M+ E+G+ P ++H+ CMVDL GRAG ++EA + +K +  E P  
Sbjct: 301 CSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPME-PND 359

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
            +W ++L A K+H N   G   A+ L  ++ +    YV+LSN+YA A R + V   R  M
Sbjct: 360 VLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNM 419

Query: 438 IQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM 497
             KGL +  G+S VEV +K + F   D  HP +  +Y+ L ++  + +  GY P++   +
Sbjct: 420 FSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVL 479

Query: 498 HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNRE 557
            +++EEE++  L  HS+KLA+A+ L+ TS G  +RIV+NLRMC DCH+  K IS+  +RE
Sbjct: 480 CDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDRE 539

Query: 558 IIVRDRLRFHHFKRGSCSCLDYW 580
           I VRDR RFHHFK G+CSC DYW
Sbjct: 540 ITVRDRHRFHHFKDGACSCRDYW 562



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 138/293 (47%), Gaps = 16/293 (5%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P +  Y  +LKA  RL  ++   QVHAH++  G      +   L+S+    G I     
Sbjct: 85  KPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCA 144

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNY------TFSAVIKS 115
           +F  +       ++ LI  ++     +D L      ++ ++S   Y         +V+ +
Sbjct: 145 VFEQMNERSVASWSALITAHASLGMWSDCL-----RLLGDMSNEGYWRAEESILVSVLSA 199

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           C HL  L+LGR+VH  +  +    ++ V+ +L+  Y K   +     +F +M  K+ +++
Sbjct: 200 CTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSY 259

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIV 234
           + MISG   +G+ +E + +F  M + G+ PD    V VL AC+  G +  G +  +   +
Sbjct: 260 SVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKL 319

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
             G++  +     ++++  R G + +A E+   M  E N + W +++S   +H
Sbjct: 320 EHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVH 372


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/517 (42%), Positives = 330/517 (63%), Gaps = 7/517 (1%)

Query: 70  DSFLFNTLIIRNSKANFST---DSLLFYRRMIVSNISPSNYTFSAVIKSCAHL-SILNLG 125
           D+FL NTLI  +  + F +    +  F+  M+ + ++P+ +TF  ++KSCA L    ++G
Sbjct: 96  DAFLVNTLIRTHVTSPFPSARRRAAAFFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVG 155

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYA--KSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
              H      G+ +D +V   L++ Y+   +  +  AR VF+RMP +S V W++MI GY 
Sbjct: 156 LQAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYV 215

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           + G + +A+ LF  M+  GV PD  T + VLAA A LG ++L RWV  F+  +G+  +V 
Sbjct: 216 RAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVT 275

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           L  +LI+  A+CG+V  A  +F+ M E  V++WT++I    M G G EAV +F  M+A G
Sbjct: 276 LCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVG 335

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           V P++V F+ VL+AC+HAG+V EG   F SM+ EYG+ P +EH+ CMVD+FGRAG++ + 
Sbjct: 336 VLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQG 395

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
            +FV+  +  KP P +W  ++ AC+ H   +LG  +  +LL+  P +  +YVMLSN+YAL
Sbjct: 396 LEFVR-AMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNVYAL 454

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
             R      +R  M ++G+KK  G S VE+D + + F  GD+SHP   EIY+ ++E+   
Sbjct: 455 TQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQYKEIYRMVEEMSRE 514

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
            R  G++  +   + +L+EE++E +L++HSEKLA+AF L+RT PG  +R+VKNLR+C DC
Sbjct: 515 LRRIGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDC 574

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           H+AIK IS   NREI+VRDR RFH FK GSCSC D+W
Sbjct: 575 HAAIKCISQVYNREIVVRDRSRFHRFKDGSCSCKDFW 611



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 4/266 (1%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           Q HA  +  G+     +   L+ +     AGF+  A+ +F  +P   +  ++ +I    +
Sbjct: 157 QAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVR 216

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
           A  S+D+++ +R M VS + P   T   V+ + A L  L L R V   V   G    + +
Sbjct: 217 AGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVTL 276

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             AL++  AK  +VD A  VF+ M +++VV+W S+I      G  KEA+G+F  M+  GV
Sbjct: 277 CNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGV 336

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKAR 262
            PD    + VL AC+  G +D GR   + +  + G++  +     +++M+ R G V +  
Sbjct: 337 LPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGL 396

Query: 263 EIFDMMS-ELNVIAWTAMISGYGMHG 287
           E    M  + N I W  +++    HG
Sbjct: 397 EFVRAMPMKPNPIIWRTLVAACRAHG 422


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/560 (37%), Positives = 344/560 (61%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L  L+++H + +   +  +  +    ++     G ++YAQR+F  I S     +N LI  
Sbjct: 161 LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 220

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
           ++++N    SL  + +M +S + P ++T  +++ +C+ L  L LG+ VH  +  +  + D
Sbjct: 221 HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 280

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           L V  ++++ Y     +   + +FD M DKS+V+WN++I+GY QNGF   A+G+F  M  
Sbjct: 281 LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 340

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
           +G+     + + V  AC+ L  + LGR  H + +   L+ +  +A SLI+MYA+ G++++
Sbjct: 341 YGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQ 400

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           + ++F+ + E +  +W AMI GYG+HG   EA++LF  M+  G  P+++TF+ VL+AC H
Sbjct: 401 SSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNH 460

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
           +GL+ EG R    M+  +GL P ++H+ C++D+ GRAG L++A + V + + E+    +W
Sbjct: 461 SGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIW 520

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
            ++L +C++H+N ++G +VA  L  +EPE P +YV+LSN+YA  G+ + V  VR  M + 
Sbjct: 521 KSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEM 580

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
            L+K  G S +E+++K + F +G++      EI      L  +  + GY P++ S  H+L
Sbjct: 581 SLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDL 640

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
            EEE+   LR HSEKLAL +GL++TS G TIR+ KNLR+CVDCH+A K IS    REI+V
Sbjct: 641 SEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVV 700

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RD  RFHHFK G CSC DYW
Sbjct: 701 RDNKRFHHFKNGVCSCGDYW 720



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 174/348 (50%), Gaps = 7/348 (2%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV--SNIS 103
           L+ +    G IT AQ IF    + +   +NT++   S    +  +    R+M+    ++ 
Sbjct: 83  LMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVK 142

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
               T    +  C H S L   + +HC+     +  +  V  A V  YAK  ++  A++V
Sbjct: 143 ADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRV 202

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F  +  K+V +WN++I G+ Q+   + ++     M+  G+ PDS T   +L+AC++L  +
Sbjct: 203 FHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSL 262

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
            LG+ VH FI+   L+ ++ +  S++++Y  CG +   + +FD M + ++++W  +I+GY
Sbjct: 263 RLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGY 322

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
             +G+   A+ +F +M  +G++   ++ + V  AC+    ++ G    A   +   LL  
Sbjct: 323 LQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKH--LLED 380

Query: 344 VEHHVC-MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
                C ++D++ + G + ++ K    +  ++ + A W AM+    +H
Sbjct: 381 DAFIACSLIDMYAKNGSITQSSKVFNGL--KEKSTASWNAMIMGYGIH 426



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 7/176 (3%)

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMR----DFGVNPDSTTCVCVLAACAQLGDIDL 225
           ++ V+WNSMI  +  NGF++E+  L   M     D    PD  T V VL  CA+  +I L
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ VH + V   LD  +VL  +L++MY++CG ++ A+ IF M +  NV++W  M+ G+  
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 286 HGYGTEAVELFHRMRAHG--VRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEY 338
            G      ++  +M A G  V+ + VT +  +  C H   +     +   S++QE+
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF 176



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 126/266 (47%), Gaps = 12/266 (4%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSN----ISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           +N++I   S   FS +S L    M+  N      P   T   V+  CA    + LG+ VH
Sbjct: 6   WNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVH 65

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
                   D +L +  AL++ Y+K   +  A+ +F    +K+VV+WN+M+ G+   G   
Sbjct: 66  GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEG--- 122

Query: 190 EAIGLFNLMRDF-----GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           +  G F+++R        V  D  T +  +  C     +   + +H + + Q    N ++
Sbjct: 123 DTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELV 182

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
           A + +  YA+CG++S A+ +F  +    V +W A+I G+        +++   +M+  G+
Sbjct: 183 ANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGL 242

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRV 330
            P++ T  ++LSAC+    ++ G  V
Sbjct: 243 LPDSFTVCSLLSACSKLKSLRLGKEV 268


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/560 (39%), Positives = 344/560 (61%), Gaps = 7/560 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH  L+ +G  +   + TKL+++ CD G + +A ++F        F++N +    + A+ 
Sbjct: 96  VHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASR 155

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSC--AHLSILNL--GRAVHCHVFVSGYDSDLH 142
             D L+ Y +M    I  + +T++ V+K+C  + LSI  L  G+ +H H+   GY+  +H
Sbjct: 156 GEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVH 215

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           V   L++ YA+   V  A  VF  MPDK++V+W++MI+ Y +N    +A+ LF +M    
Sbjct: 216 VMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEA 275

Query: 203 VN--PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            +  P+  T V VL ACA L  ++ G+ VH +++ +GLD  + +  +LI MY RCG +S 
Sbjct: 276 CDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEIST 335

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
            + +FD M + +VI+W ++IS YGMHG G +A+++F  M   GV P+ +TF+ VL AC+H
Sbjct: 336 GQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSH 395

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
           AGLV+E   +F SM  +Y + P +EH+ CMVD+ GRA  L+EA + +++ +  KP P VW
Sbjct: 396 AGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQN-MDFKPGPTVW 454

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
            ++LG+C++H N +L    +  L  +EP+N G+YV+LS+IYA +   + V  VR  +  +
Sbjct: 455 GSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESR 514

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
           GL+K    S +EV +K Y     ++ +P   E+  +L  L+   +  GYVP++    ++L
Sbjct: 515 GLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDL 574

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
           +EEE+E  +  HS KLA+AFGL+ TS G  IRI  NLR+C DCH+ +KF+S  TNREI++
Sbjct: 575 DEEEKERIVLGHSGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILL 634

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RD  RFH FK G CSC DYW
Sbjct: 635 RDVNRFHCFKDGVCSCGDYW 654



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 180/392 (45%), Gaps = 51/392 (13%)

Query: 96  RMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155
           +++    +P+  TF  +I SC   + L+ G  VH  +  SG D D ++   L+N Y    
Sbjct: 64  QLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLG 123

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
           +VD A KVFD   +K++  WN++          ++ + L+  M   G+  +  T   VL 
Sbjct: 124 SVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLK 183

Query: 216 ACA----QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
           AC      +  +  G+ +H  I+  G + +V + T+L+++YAR G VS A  +F  M + 
Sbjct: 184 ACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDK 243

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRM--RAHGVRPNNVTFVAVLSACA---------- 319
           N+++W+AMI+ Y  +    +A+ELF  M   A    PN +T V+VL ACA          
Sbjct: 244 NIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKL 303

Query: 320 -HA------------------------GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
            HA                        G +  G RVF  M++       V     ++ ++
Sbjct: 304 VHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKR-----DVISWNSLISIY 358

Query: 355 GRAGLLNEAYKFVKDVI--GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP- 411
           G  GL  +A +  +++I  G  P+   +  +L AC      +    + E +L+    +P 
Sbjct: 359 GMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPR 418

Query: 412 -GHYVMLSNIYALAGRMDR-VEVVRNIMIQKG 441
             HY  + +I   A R+D  +E+++N+  + G
Sbjct: 419 MEHYACMVDILGRANRLDEAIELIQNMDFKPG 450



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 26/232 (11%)

Query: 168 PDKSVVAWNS--MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           P K + + N+  +I    + G  K+A+ L         NP   T   ++ +C +   +  
Sbjct: 37  PTKDIKSNNNDDLIQSLCRGGNLKQAVQLLCC----EPNPTKKTFELLINSCIEQNSLSD 92

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G  VH  +VG GLD +  LAT LINMY   G+V  A ++FD   E  +  W A+     M
Sbjct: 93  GVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAM 152

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL----VQEGHRVFASMRQEYGLL 341
              G + + L+ +M   G+  N  T+  VL AC  + L    +++G  + A +     L 
Sbjct: 153 ASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHI-----LR 207

Query: 342 PGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGAC 387
            G E HV     ++D++ R G ++    +   V G  P   +  W+AM+ AC
Sbjct: 208 HGYEGHVHVMTTLLDVYARFGYVS----YASSVFGAMPDKNIVSWSAMI-AC 254


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/560 (39%), Positives = 343/560 (61%), Gaps = 7/560 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH  L+ +G+ +   + TKL+++  + G I  A ++F        +++N L    +    
Sbjct: 100 VHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGH 159

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSC--AHLSI--LNLGRAVHCHVFVSGYDSDLH 142
             + L  Y +M         +T++ V+K+C  + LS+  L  G+ +H H+   GY++++H
Sbjct: 160 GKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIH 219

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           V   L++ YAK  +V  A  VF  MP K+ V+W++MI+ + +N    +A+ LF LM    
Sbjct: 220 VMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEA 279

Query: 203 VN--PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            N  P+S T V +L ACA L  ++ G+ +H +I+ + LD  + +  +LI MY RCG V  
Sbjct: 280 CNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLM 339

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
            + +FD M + +V++W ++IS YGMHG+G +A+++F  M   GV P+ ++F+ VL AC+H
Sbjct: 340 GQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSH 399

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
           AGLV+EG  +F SM  +Y + PG+EH+ CMVDL GRA  L EA K ++D+  E P P VW
Sbjct: 400 AGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFE-PGPTVW 458

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
            ++LG+C++H N +L    +  L  +EP N G+YV+L++IYA A      + V  ++  +
Sbjct: 459 GSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEAR 518

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
           GL+K  G S +EV +K Y F   D+ +P   EI+  L +L    +  GYVP++   +++L
Sbjct: 519 GLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDL 578

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
           +EEE+E  +  HSEKLA+AFGL+ T+ G TIRI KNLR+C DCH+  KFIS   NREI+V
Sbjct: 579 DEEEKERIVLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILV 638

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RD  RFHHF+ G CSC DYW
Sbjct: 639 RDVNRFHHFRDGVCSCGDYW 658



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 182/380 (47%), Gaps = 41/380 (10%)

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
           +P+  TF  +I SCA  + L+ G  VH  +  SG+D D  +   L+N Y +  ++D A K
Sbjct: 75  NPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALK 134

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC--AQL 220
           VFD   ++++  WN++       G  KE + L+  M   G   D  T   VL AC  ++L
Sbjct: 135 VFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSEL 194

Query: 221 GDIDL--GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
               L  G+ +H  I+  G + N+ + T+L+++YA+ G+VS A  +F  M   N ++W+A
Sbjct: 195 SVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSA 254

Query: 279 MISGYGMHGYGTEAVELFHRM--RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-- 334
           MI+ +  +    +A+ELF  M   A    PN+VT V +L ACA    +++G  +   +  
Sbjct: 255 MIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILR 314

Query: 335 RQEYGLLPGVEHHVCM----------------------------VDLFGRAGLLNEAYKF 366
           RQ   +LP +   + M                            + ++G  G   +A + 
Sbjct: 315 RQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQI 374

Query: 367 VKDVI--GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG--HYVMLSNIYA 422
            +++I  G  P+   +  +LGAC      + G  + E +LS    +PG  HY  + ++  
Sbjct: 375 FENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLG 434

Query: 423 LAGRM-DRVEVVRNIMIQKG 441
            A R+ + ++++ ++  + G
Sbjct: 435 RANRLGEAIKLIEDMHFEPG 454



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 164/332 (49%), Gaps = 14/332 (4%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+  +++HAH++  GY  +  ++T LL +    G ++YA  +F  +P+ +   ++ +I  
Sbjct: 199 LRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIAC 258

Query: 81  NSKANFSTDSLLFYRRMIVS--NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
            +K      +L  ++ M+    N  P++ T   ++++CA L+ L  G+ +H ++     D
Sbjct: 259 FAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLD 318

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
           S L V  AL+  Y +   V + ++VFD M  + VV+WNS+IS Y  +GF K+AI +F  M
Sbjct: 319 SILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENM 378

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGN 257
              GV+P   + + VL AC+  G ++ G+ + E ++ +  +   +     ++++  R   
Sbjct: 379 IHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANR 438

Query: 258 VSKA-REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA--HGVRPNNV-TFVA 313
           + +A + I DM  E     W +++    +H      VEL  R       + P N   +V 
Sbjct: 439 LGEAIKLIEDMHFEPGPTVWGSLLGSCRIHC----NVELAERASTVLFELEPRNAGNYVL 494

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGL--LPG 343
           +    A A L  E   V   + +  GL  LPG
Sbjct: 495 LADIYAEAKLWSEAKSVM-KLLEARGLQKLPG 525



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 113/258 (43%), Gaps = 18/258 (6%)

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           N +I    + G  K+A+ L         NP   T   ++ +CAQ   +  G  VH  +V 
Sbjct: 51  NQLIQSLCKGGNLKQALHLLCC----EPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVD 106

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
            G D +  LAT LINMY   G++ +A ++FD   E  +  W A+     M G+G E ++L
Sbjct: 107 SGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDL 166

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGL----VQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           + +M   G   +  T+  VL AC  + L    +++G  + A + + +G    +     ++
Sbjct: 167 YIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILR-HGYEANIHVMTTLL 225

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAP--AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
           D++ + G    +  +   V    P      W+AM+ AC       +       L+  E  
Sbjct: 226 DVYAKFG----SVSYANSVFCAMPTKNFVSWSAMI-ACFAKNEMPMKALELFQLMMFEAC 280

Query: 410 N--PGHYVMLSNIYALAG 425
           N  P    M++ + A AG
Sbjct: 281 NSVPNSVTMVNMLQACAG 298


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/596 (35%), Positives = 353/596 (59%), Gaps = 16/596 (2%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFI 56
           ++  +P      ++L A   L+ L   +++HA+ +  G     S + + L+ + C+   +
Sbjct: 295 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 354

Query: 57  TYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKS 115
              +R+F  +      L+N +I   S+     ++LL +  M  S  +  ++ T + V+ +
Sbjct: 355 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           C      +   A+H  V   G D D  VQ  L++ Y++   +D+A ++F +M D+ +V W
Sbjct: 415 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 474

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDF-----------GVNPDSTTCVCVLAACAQLGDID 224
           N+MI+GY  +   ++A+ L + M++             + P+S T + +L +CA L  + 
Sbjct: 475 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALA 534

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
            G+ +H + +   L  +V + ++L++MYA+CG +  +R++FD + + NVI W  +I  YG
Sbjct: 535 KGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYG 594

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
           MHG G EA++L   M   GV+PN VTF++V +AC+H+G+V EG R+F  M+ +YG+ P  
Sbjct: 595 MHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSS 654

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           +H+ C+VDL GRAG + EAY+ +  +  +      W+++LGA ++H N ++G   A++L+
Sbjct: 655 DHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLI 714

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
            +EP    HYV+L+NIY+ AG  D+   VR  M ++G++K  G S +E   + + F  GD
Sbjct: 715 QLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGD 774

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
            SHP + ++  YL+ L  R R+ GYVP++   +H +EE+E+E  L  HSEKLA+AFG++ 
Sbjct: 775 SSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILN 834

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           TSPG  IR+ KNLR+C DCH A KFIS   +REII+RD  RFH FK G+CSC DYW
Sbjct: 835 TSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 205/407 (50%), Gaps = 18/407 (4%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVHA+ +  G   S  ++  L+++    G +  ++ +       D   +NT++    + 
Sbjct: 222 KQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN 280

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG-YDSDLHV 143
               ++L + R M++  + P  +T S+V+ +C+HL +L  G+ +H +   +G  D +  V
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD-FG 202
            +ALV+ Y     V   R+VFD M D+ +  WN+MI+GY QN   KEA+ LF  M +  G
Sbjct: 341 GSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAG 400

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           +  +STT   V+ AC + G       +H F+V +GLD +  +  +L++MY+R G +  A 
Sbjct: 401 LLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAM 460

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR------AHG-----VRPNNVTF 311
            IF  M + +++ W  MI+GY    +  +A+ L H+M+      + G     ++PN++T 
Sbjct: 461 RIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITL 520

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           + +L +CA    + +G  + A   +   L   V     +VD++ + G L  + K V D I
Sbjct: 521 MTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRK-VFDQI 578

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
            +K     W  ++ A  MH N    +++   ++ V+   P     +S
Sbjct: 579 PQKNV-ITWNVIIMAYGMHGNGQEAIDLLRMMM-VQGVKPNEVTFIS 623



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 150/288 (52%), Gaps = 14/288 (4%)

Query: 53  AGFITYAQRIFFCIP-SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA 111
           A  ++ A  IF     SP+ ++   L+    ++N   +++L Y  MIV  I P NY F A
Sbjct: 45  ASAVSGAPSIFISQSRSPEWWI--DLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPA 102

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSD-LHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
           ++K+ A L  + LG+ +H HV+  GY  D + V   LVN Y K  +     KVFDR+ ++
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 162

Query: 171 SVVAWNSMIS---GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG---DID 224
           + V+WNS+IS    +E+   A EA   F  M D  V P S T V V+ AC+ L     + 
Sbjct: 163 NQVSWNSLISSLCSFEKWEMALEA---FRCMLDENVEPSSFTLVSVVTACSNLPMPEGLM 219

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
           +G+ VH + + +G ++N  +  +L+ MY + G ++ ++ +       +++ W  ++S   
Sbjct: 220 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
            +    EA+E    M   GV P+  T  +VL AC+H  +++ G  + A
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 326



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 163/327 (49%), Gaps = 10/327 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYG-RSRSMLTKLLSLVCDAGFITYAQ 60
           +P + A+ A+LKA   L+ ++   Q+HAH+   GYG  S ++   L++L    G      
Sbjct: 94  KPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVY 153

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           ++F  I   +   +N+LI           +L  +R M+  N+ PS++T  +V+ +C++L 
Sbjct: 154 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213

Query: 121 I---LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
           +   L +G+ VH +    G + +  +   LV  Y K   +  ++ +      + +V WN+
Sbjct: 214 MPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 272

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           ++S   QN    EA+     M   GV PD  T   VL AC+ L  +  G+ +H + +  G
Sbjct: 273 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 332

Query: 238 -LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
            LD N  + ++L++MY  C  V   R +FD M +  +  W AMI+GY  + +  EA+ LF
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392

Query: 297 HRM-RAHGVRPNNVTFVAVLSACAHAG 322
             M  + G+  N+ T   V+ AC  +G
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSG 419



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 147/338 (43%), Gaps = 57/338 (16%)

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI- 233
           W  ++    ++   +EA+  +  M   G+ PD+     +L A A L D++LG+ +H  + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 234 -VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
             G G+D +V +A +L+N+Y +CG+     ++FD +SE N ++W ++IS          A
Sbjct: 125 KFGYGVD-SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACA--------------HAGLVQEGHR---VFASMR 335
           +E F  M    V P++ T V+V++AC+              HA  +++G     +  ++ 
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLV 243

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLN---------------EAYKFVKDVIGEKPAPAVW 380
             YG L  +     ++  FG   L+                EA +++++++ E   P  +
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 381 T--AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV-------------MLSNIYALAG 425
           T  ++L AC   +    G E+  + L     +   +V             +LS      G
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMG 463
             DR   + N MI        GYS  E D++  L  +G
Sbjct: 364 MFDRKIGLWNAMI-------AGYSQNEHDKEALLLFIG 394


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/611 (36%), Positives = 348/611 (56%), Gaps = 53/611 (8%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVC-DAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           + L+Q+HA  I  G  +      +++      +  I YA+ +F  +P P+ F +NT++  
Sbjct: 33  RDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRV 92

Query: 81  NSKAN---FSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
            ++ N     +++L+ +  M+    + P+ +TF +V+K+CA  S L  G+ +H  +   G
Sbjct: 93  LAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFG 152

Query: 137 YDSDLHVQAALVNFYA-------------------------------------------- 152
           +  D  V + LV  Y                                             
Sbjct: 153 FHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMID 212

Query: 153 ---KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
              +  ++  A+ +FD MP +SVV+WN MISGY QNG   EAI LF  M+   ++P+  T
Sbjct: 213 GQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVT 272

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
            V VL A A++G ++LG+W+H +     ++++ VL ++L++MY++CG++ +A ++F+ + 
Sbjct: 273 LVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLP 332

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
           + N I W+A+I  + MHG   +A+  FH M   GV PN+V ++ +LSAC+HAGLV+EG  
Sbjct: 333 KRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRS 392

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
            F+ M +  GL P +EH+ CMVDL GRAG L EA + ++++  E P   +W A+LGACKM
Sbjct: 393 FFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIE-PDDVIWKALLGACKM 451

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           HKN  +G  VAE L+ + P + G YV LSN+YA  G  + V  VR  M    ++K  G S
Sbjct: 452 HKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCS 511

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
            +E+    + F + D SH    EI   L E+  + R  GY P +       +E+ER  +L
Sbjct: 512 WIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARAL 571

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
           +YHSEK+A+AFGL+ T+P   ++IVKNLR+C DCH+++K IS+   R+IIVRDR RFH F
Sbjct: 572 QYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQF 631

Query: 570 KRGSCSCLDYW 580
           + GSCSC+DYW
Sbjct: 632 EHGSCSCMDYW 642


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/572 (38%), Positives = 345/572 (60%), Gaps = 6/572 (1%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAG-YGRS--RSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           ++LK    ++  +Q HA ++  G +G S   S L    +L  D G + YA  IF  +   
Sbjct: 36  SLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCAL-SDWGSMDYACSIFRQMDEL 94

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
            SF FNT++  + K   + ++L+ Y+ M    + P N+T+  ++K+CA L  +  G  VH
Sbjct: 95  GSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVH 154

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
            H+   G ++D+ VQ +L++ Y K   + V   VF++M ++SV +W+++I+ +   G   
Sbjct: 155 AHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWS 214

Query: 190 EAIGLFNLMRDFGV-NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
           + + L   M + G    + +  V VL+AC  LG +DLGR VH F++     +NV++ TSL
Sbjct: 215 DCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSL 274

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           I MY +CG++ K   +F  M++ N ++++ MISG  MHGYG E + +F  M   G+ P++
Sbjct: 275 IEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDD 334

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           + +V VL+AC+HAGLVQEG + F  M+ E+G+ P ++H+ CMVDL GRAG ++EA + +K
Sbjct: 335 IVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIK 394

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
            +  E P   +W ++L A K+H N   G   A+ L  ++ +    YV+LSN+YA A R +
Sbjct: 395 SMPME-PNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWE 453

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
            V   R  M  KGL +  G+S VEV +K + F   D  HP +  +Y+ L ++  + +  G
Sbjct: 454 DVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEG 513

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           Y P++   + +++EEE++  L  HS+KLA+A+ L+ TS G  IRIV+NLRMC DCH+  K
Sbjct: 514 YSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTK 573

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            IS+  +REI VRDR RFHHFK G+CSC DYW
Sbjct: 574 LISIIFDREITVRDRHRFHHFKDGACSCRDYW 605


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/592 (35%), Positives = 351/592 (59%), Gaps = 16/592 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQ 60
           +P      ++L A   L+ L   +++HA+ +  G     S + + L+ + C+   +   +
Sbjct: 212 EPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGR 271

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCAHL 119
           R+F  +      L+N +I   S+     ++LL +  M  S  +  ++ T + V+ +C   
Sbjct: 272 RVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRS 331

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
              +   A+H  V   G D D  VQ  L++ Y++   +D+A ++F +M D+ +V WN+MI
Sbjct: 332 GAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMI 391

Query: 180 SGYEQNGFAKEAIGLFNLMRDF-----------GVNPDSTTCVCVLAACAQLGDIDLGRW 228
           +GY  +   ++A+ L + M++             + P+S T + +L +CA L  +  G+ 
Sbjct: 392 TGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE 451

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H + +   L  +V + ++L++MYA+CG +  +R++FD + + NVI W  +I  YGMHG 
Sbjct: 452 IHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGN 511

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
           G EA++L   M   GV+PN VTF++V +AC+H+G+V EG R+F  M+ +YG+ P  +H+ 
Sbjct: 512 GQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYA 571

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
           C+VDL GRAG + EAY+ +  +  +      W+++LGA ++H N ++G   A++L+ +EP
Sbjct: 572 CVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEP 631

Query: 409 ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHP 468
               HYV+L+NIY+ AG  D+   VR  M ++G++K  G S +E   + + F  GD SHP
Sbjct: 632 NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHP 691

Query: 469 NTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPG 528
            + ++  YL+ L  R R+ GYVP++   +H +EE+E+E  L  HSEKLA+AFG++ TSPG
Sbjct: 692 QSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPG 751

Query: 529 MTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             IR+ KNLR+C DCH A KFIS   +REII+RD  RFH FK G+CSC DYW
Sbjct: 752 TIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 205/407 (50%), Gaps = 18/407 (4%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVHA+ +  G   S  ++  L+++    G +  ++ +       D   +NT++    + 
Sbjct: 135 KQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN 193

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG-YDSDLHV 143
               ++L + R M++  + P  +T S+V+ +C+HL +L  G+ +H +   +G  D +  V
Sbjct: 194 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 253

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD-FG 202
            +ALV+ Y     V   R+VFD M D+ +  WN+MI+GY QN   KEA+ LF  M +  G
Sbjct: 254 GSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAG 313

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           +  +STT   V+ AC + G       +H F+V +GLD +  +  +L++MY+R G +  A 
Sbjct: 314 LLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAM 373

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR------AHG-----VRPNNVTF 311
            IF  M + +++ W  MI+GY    +  +A+ L H+M+      + G     ++PN++T 
Sbjct: 374 RIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITL 433

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           + +L +CA    + +G  + A   +   L   V     +VD++ + G L  + K V D I
Sbjct: 434 MTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRK-VFDQI 491

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
            +K     W  ++ A  MH N    +++   ++ V+   P     +S
Sbjct: 492 PQKNV-ITWNVIIMAYGMHGNGQEAIDLLRMMM-VQGVKPNEVTFIS 536



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 163/327 (49%), Gaps = 10/327 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYG-RSRSMLTKLLSLVCDAGFITYAQ 60
           +P + A+ A+LKA   L+ ++   Q+HAH+   GYG  S ++   L++L    G      
Sbjct: 7   KPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVY 66

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           ++F  I   +   +N+LI           +L  +R M+  N+ PS++T  +V+ +C++L 
Sbjct: 67  KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 126

Query: 121 I---LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
           +   L +G+ VH +    G + +  +   LV  Y K   +  ++ +      + +V WN+
Sbjct: 127 MPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 185

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           ++S   QN    EA+     M   GV PD  T   VL AC+ L  +  G+ +H + +  G
Sbjct: 186 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 245

Query: 238 -LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
            LD N  + ++L++MY  C  V   R +FD M +  +  W AMI+GY  + +  EA+ LF
Sbjct: 246 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 305

Query: 297 HRM-RAHGVRPNNVTFVAVLSACAHAG 322
             M  + G+  N+ T   V+ AC  +G
Sbjct: 306 IGMEESAGLLANSTTMAGVVPACVRSG 332



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 11/243 (4%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD-LHVQAALVNFYAKSN 155
           MIV  I P NY F A++K+ A L  + LG+ +H HV+  GY  D + V   LVN Y K  
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISG---YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVC 212
           +     KVFDR+ +++ V+WNS+IS    +E+   A EA   F  M D  V P S T V 
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEA---FRCMLDENVEPSSFTLVS 117

Query: 213 VLAACAQLG---DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
           V+ AC+ L     + +G+ VH + + +G ++N  +  +L+ MY + G ++ ++ +     
Sbjct: 118 VVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFG 176

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             +++ W  ++S    +    EA+E    M   GV P+  T  +VL AC+H  +++ G  
Sbjct: 177 GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKE 236

Query: 330 VFA 332
           + A
Sbjct: 237 LHA 239


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/584 (38%), Positives = 345/584 (59%), Gaps = 8/584 (1%)

Query: 3   NKQPHSPAYEAILKAGPRLK-PL--QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           N QP+   +  + KA   ++ P+  +Q+H   +  G      +      + C  GF   A
Sbjct: 103 NVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDA 162

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
             +F  +P  +   +N  I    +   S D+++ ++  +  +  P++ TF A + +C  +
Sbjct: 163 CNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDM 222

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-KSVVAWNSM 178
             LNLGR +H  +   GY  D+ V   L++FY K  ++  A  VF+R+ + K+VV+W SM
Sbjct: 223 VRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSM 282

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           ++   QN   + A  +F   R   V P       VL+ACA+LG ++LGR VH   V   +
Sbjct: 283 LAALVQNHEEERACMVFLQARK-EVEPTDFMISSVLSACAELGGLELGRSVHALAVKACV 341

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           + N+ + ++L++MY +CG++  A ++F  + E N++ W AMI GY   G    A+ LF  
Sbjct: 342 EDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEE 401

Query: 299 MR--AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
           M   +HG+RP+ VT +++LS C+  G V+ G ++F SMR  YG+ PG EH  C+VDL GR
Sbjct: 402 MTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGR 461

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
           +GL++ AY+F+++ +  +P  +VW A+LGAC+MH   +LG   AE L  ++  + G++V+
Sbjct: 462 SGLVDRAYEFIQN-MAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVV 520

Query: 417 LSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQY 476
           LSN+ A AGR +   VVR  M   G+KK+VGYS + V  + ++F   D SH   +EI   
Sbjct: 521 LSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAM 580

Query: 477 LDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKN 536
           L +L G  +EAGYVP++  ++ +LE+EE+   + YHSEK+ALAFGL+    G+ IRI KN
Sbjct: 581 LGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKN 640

Query: 537 LRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           LR+C DCHSAIKFIS    REIIVRD  RFH FK G CSC DYW
Sbjct: 641 LRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 194/431 (45%), Gaps = 20/431 (4%)

Query: 25  QQVHAHLIVAGYGRSRSMLTK-LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           + +HAH+I        S L+  L+++      +  AQ +           + +LI     
Sbjct: 26  RTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVH 85

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
                 +LL +  M   N+ P+++TF  V K+ A + I   G+ +H      G   D+ V
Sbjct: 86  NRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFV 145

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             +  + Y K+     A  +FD MP +++  WN+ IS   Q+  + +AI  F        
Sbjct: 146 GCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHG 205

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            P+S T    L AC  +  ++LGR +H FIV  G   +V +A  LI+ Y +CG++  A  
Sbjct: 206 EPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEM 265

Query: 264 IFDMM-SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           +F+ + +  NV++W +M++    +     A  +F + R   V P +    +VLSACA  G
Sbjct: 266 VFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKE-VEPTDFMISSVLSACAELG 324

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAP- 377
            ++ G  V A       +   VE ++     +VD++G+ G +  A    + V  E P   
Sbjct: 325 GLELGRSVHA-----LAVKACVEDNIFVGSALVDMYGKCGSIENA----EQVFSELPERN 375

Query: 378 -AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
              W AM+G      + D+ + + E +          YV L +I ++  R+  VE  R I
Sbjct: 376 LVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVE--RGI 433

Query: 437 MIQKGLKKHVG 447
            I + ++ + G
Sbjct: 434 QIFESMRLNYG 444


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/558 (40%), Positives = 326/558 (58%), Gaps = 7/558 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD--SFLFNTLIIRNS 82
           +Q+H H+   G      + T L+S+      I  A+++F   P     +  +N+L+   +
Sbjct: 30  KQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYA 89

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
             +   D ++ +  M    +  +  T   +++ C     L LG  VH      G D D  
Sbjct: 90  LNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSS 149

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           V   L+  Y KS  +D  RK+FD MP K ++ WN+MI+GY QNG A   + L+  M   G
Sbjct: 150 VGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKG 209

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
             PD  T V VL++CA LG + +G+ V   + G G   N  L  +L+NMYARCGN+ KAR
Sbjct: 210 FCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKAR 269

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           +IFD M   +V++WTA+I GYGMHG G  AV LF  M   G++P+   FV+VLSAC+HAG
Sbjct: 270 DIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAG 329

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           L  +G   F  M ++YGL PG EH+ CMVDL GRAG LNEA + ++  +  +   A+W A
Sbjct: 330 LTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIES-MQVRADGALWGA 388

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LGACK+H+N +L     E ++ +EP N G+YV+LSN+Y  AG ++ +  VR +M ++ L
Sbjct: 389 LLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKL 448

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
           KK  G S VE   + +LF  GD++HP TNEIY+ L+EL    ++     +++   HE   
Sbjct: 449 KKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNELENLVKDLDGCKKND---HE-RR 504

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           EE   S+  HSEKLA+AF L+ T     I I+KNLR+C DCH  IK +S   +R+ +VRD
Sbjct: 505 EEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVDRQFVVRD 564

Query: 563 RLRFHHFKRGSCSCLDYW 580
             RFHHFK G CSC +YW
Sbjct: 565 ATRFHHFKNGFCSCKEYW 582



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 178/328 (54%), Gaps = 11/328 (3%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M+ S  SP+ +TF   IKSCA LS+   G+ +HCHVF +G   +  VQ +L++ Y K + 
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 157 VDVARKVFDRMPD--KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
           +D ARK+FD  P   K  V +NS++SGY  N   K+ + LF  MR+ GV  +  T + ++
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
             C   G++ LG  VH F V  GLD++  +   L+ MY + G +   R++FD M    +I
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
            W AMI+GY  +G     +EL+  M + G  P+ +T V VLS+CAH G +  G  V   M
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKM 240

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKN 392
            + +G       +  +V+++ R G L +A    +D+    P  +V  WTA++G   MH  
Sbjct: 241 -EGFGFSSNPFLNNALVNMYARCGNLKKA----RDIFDGMPVKSVVSWTAIIGGYGMHGQ 295

Query: 393 FDLGVEVAEHLL--SVEPENPGHYVMLS 418
            ++ V + + ++   ++P+      +LS
Sbjct: 296 GEVAVGLFDEMIRGGIKPDGTAFVSVLS 323


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/596 (35%), Positives = 353/596 (59%), Gaps = 16/596 (2%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFI 56
           ++  +P      ++L A   L+ L   +++HA+ +  G     S + + L+ + C+   +
Sbjct: 295 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 354

Query: 57  TYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKS 115
              +R+F  +      L+N +I   S+     ++LL +  M  S  +  ++ T + V+ +
Sbjct: 355 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           C      +   A+H  V   G D D  VQ  L++ Y++   +D+A ++F +M D+ +V W
Sbjct: 415 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 474

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDF-----------GVNPDSTTCVCVLAACAQLGDID 224
           N+MI+GY  +   ++A+ L + M++             + P+S T + +L +CA L  + 
Sbjct: 475 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALA 534

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
            G+ +H + +   L  +V + ++L++MYA+CG +  +R++FD + + NVI W  +I  YG
Sbjct: 535 KGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYG 594

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
           MHG G EA++L   M   GV+PN VTF++V +AC+H+G+V EG R+F  M+ +YG+ P  
Sbjct: 595 MHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSS 654

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           +H+ C+VDL GRAG + EAY+ +  +  +      W+++LGA ++H N ++G   A++L+
Sbjct: 655 DHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLI 714

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
            +EP    HYV+L+NIY+ AG  D+   VR  M ++G++K  G S +E   + + F  GD
Sbjct: 715 QLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGD 774

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
            SHP + ++  YL+ L  R R+ GYVP++   +H +EE+E+E  L  HSEKLA+AFG++ 
Sbjct: 775 SSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILN 834

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           TSPG  IR+ KNLR+C DCH A KFIS   +REII+RD  RFH FK G+CSC DYW
Sbjct: 835 TSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 205/407 (50%), Gaps = 18/407 (4%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVHA+ +  G   S  ++  L+++    G +  ++ +       D   +NT++    + 
Sbjct: 222 KQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN 280

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG-YDSDLHV 143
               ++L + R M++  + P  +T S+V+ +C+HL +L  G+ +H +   +G  D +  V
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD-FG 202
            +ALV+ Y     V   R+VFD M D+ +  WN+MI+GY QN   KEA+ LF  M +  G
Sbjct: 341 GSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAG 400

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           +  +STT   V+ AC + G       +H F+V +GLD +  +  +L++MY+R G +  A 
Sbjct: 401 LLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAM 460

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR------AHG-----VRPNNVTF 311
            IF  M + +++ W  MI+GY    +  +A+ L H+M+      + G     ++PN++T 
Sbjct: 461 RIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITL 520

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           + +L +CA    + +G  + A   +   L   V     +VD++ + G L  + K V D I
Sbjct: 521 MTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRK-VFDQI 578

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
            +K     W  ++ A  MH N    +++   ++ V+   P     +S
Sbjct: 579 PQKNV-ITWNVIIMAYGMHGNGQEAIDLLRMMM-VQGVKPNEVTFIS 623



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 150/288 (52%), Gaps = 14/288 (4%)

Query: 53  AGFITYAQRIFFCIP-SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA 111
           A  ++ A  IF     SP+ ++   L+    ++N   +++L Y  MIV  I P NY F A
Sbjct: 45  ASAVSGAPSIFISQSRSPEWWI--DLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPA 102

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSD-LHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
           ++K+ A L  + LG+ +H HV+  GY  D + V   LVN Y K  +     KVFDR+ ++
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 162

Query: 171 SVVAWNSMIS---GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG---DID 224
           + V+WNS+IS    +E+   A EA   F  M D  V P S T V V+ AC+ L     + 
Sbjct: 163 NQVSWNSLISSLCSFEKWEMALEA---FRCMLDENVEPSSFTLVSVVTACSNLPMPEGLM 219

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
           +G+ VH + + +G ++N  +  +L+ MY + G ++ ++ +       +++ W  ++S   
Sbjct: 220 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
            +    EA+E    M   GV P+  T  +VL AC+H  +++ G  + A
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 326



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 163/327 (49%), Gaps = 10/327 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYG-RSRSMLTKLLSLVCDAGFITYAQ 60
           +P + A+ A+LKA   L+ ++   Q+HAH+   GYG  S ++   L++L    G      
Sbjct: 94  KPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVY 153

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           ++F  I   +   +N+LI           +L  +R M+  N+ PS++T  +V+ +C++L 
Sbjct: 154 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213

Query: 121 I---LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
           +   L +G+ VH +    G + +  +   LV  Y K   +  ++ +      + +V WN+
Sbjct: 214 MPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 272

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           ++S   QN    EA+     M   GV PD  T   VL AC+ L  +  G+ +H + +  G
Sbjct: 273 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 332

Query: 238 -LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
            LD N  + ++L++MY  C  V   R +FD M +  +  W AMI+GY  + +  EA+ LF
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392

Query: 297 HRM-RAHGVRPNNVTFVAVLSACAHAG 322
             M  + G+  N+ T   V+ AC  +G
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSG 419



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 147/338 (43%), Gaps = 57/338 (16%)

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI- 233
           W  ++    ++   +EA+  +  M   G+ PD+     +L A A L D++LG+ +H  + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 234 -VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
             G G+D +V +A +L+N+Y +CG+     ++FD +SE N ++W ++IS          A
Sbjct: 125 KFGYGVD-SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACA--------------HAGLVQEGHR---VFASMR 335
           +E F  M    V P++ T V+V++AC+              HA  +++G     +  ++ 
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLV 243

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLN---------------EAYKFVKDVIGEKPAPAVW 380
             YG L  +     ++  FG   L+                EA +++++++ E   P  +
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 381 T--AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV-------------MLSNIYALAG 425
           T  ++L AC   +    G E+  + L     +   +V             +LS      G
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMG 463
             DR   + N MI        GYS  E D++  L  +G
Sbjct: 364 MFDRKIGLWNAMI-------AGYSQNEHDKEALLLFIG 394


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/580 (38%), Positives = 348/580 (60%), Gaps = 7/580 (1%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P S  +  +LKA   L  LQ    VHA +   G+     +   L++L      +  A+ +
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFST--DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           F  +P P+  + +   I ++ A      ++L  +  M   ++ P      +V+ +   L 
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQ 236

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L  GR++H  V   G + +  +  +L   YAK   V  A+ +FD+M   +++ WN+MIS
Sbjct: 237 DLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMIS 296

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY +NG+A+EAI +F+ M +  V PD+ +    ++ACAQ+G ++  R ++E++       
Sbjct: 297 GYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRD 356

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +V ++++LI+M+A+CG+V  AR +FD   + +V+ W+AMI GYG+HG   EA+ L+  M 
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAME 416

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             GV PN+VTF+ +L AC H+G+V+EG   F  M  ++ + P  +H+ C++DL GRAG L
Sbjct: 417 RGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLM-ADHKINPQQQHYACVIDLLGRAGHL 475

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
           ++AY+ +K  +  +P   VW A+L ACK H++ +LG   A+ L S++P N GHYV LSN+
Sbjct: 476 DQAYEVIK-CMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNL 534

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA A   DRV  VR  M +KGL K VG S VEV  +   F +GDKSHP   EI + ++ +
Sbjct: 535 YAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWI 594

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
             R +E G+V   ++++H+L +EE E +L  HSE++A+A+GL+ T  G  +RI KNLR C
Sbjct: 595 ESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRAC 654

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           V+CH+A K IS   +REI+VRD  RFHHFK G CSC DYW
Sbjct: 655 VNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 139/392 (35%), Positives = 224/392 (57%), Gaps = 8/392 (2%)

Query: 3   NKQPHSPA-YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           N   HS + Y +++ +      L+Q+HA L+V G   S  ++TKL+      G IT+A++
Sbjct: 15  NSGIHSDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQ 74

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P P  F +N +I   S+ N   D+LL Y  M ++ +SP ++TF  ++K+C+ LS 
Sbjct: 75  VFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSH 134

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD--RMPDKSVVAWNSMI 179
           L +GR VH  VF  G+D+D+ VQ  L+  YAK   +  AR VF+   +P++++V+W +++
Sbjct: 135 LQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIV 194

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           S Y QNG   EA+ +F+ MR   V PD    V VL A   L D+  GR +H  +V  GL+
Sbjct: 195 SAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLE 254

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
           +   L  SL  MYA+CG V+ A+ +FD M   N+I W AMISGY  +GY  EA+++FH M
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAG 358
               VRP+ ++  + +SACA  G +++   ++  + R +Y     V     ++D+F + G
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCG 372

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            + E  + V D   ++    VW+AM+    +H
Sbjct: 373 SV-EGARLVFDRTLDRDV-VVWSAMIVGYGLH 402


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/527 (41%), Positives = 321/527 (60%), Gaps = 17/527 (3%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   +  +I   S+   S ++L  +R+MI S   P+  T  +V+ +CA L   + G  +H
Sbjct: 220 DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIH 279

Query: 130 CHVF----------VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNS 177
            +              G D DL V  AL++ Y+K  +   AR +FD +P  +++VV W  
Sbjct: 280 AYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 339

Query: 178 MISGYEQNGFAKEAIGLFNLM--RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           MI G+ Q G + +A+ LF  M    +GV P++ T  C+L ACA L  I +G+ +H +++ 
Sbjct: 340 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 399

Query: 236 --QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
             Q       +A  LINMY++CG+V  AR +FD MS+ + I+WT+M++GYGMHG G+EA+
Sbjct: 400 HHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 459

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           ++F +MR  G  P+++TF+ VL AC+H G+V +G   F SM  +YGL P  EH+   +DL
Sbjct: 460 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDL 519

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
             R G L++A+K VKD+  E P   VW A+L AC++H N +L       L+ +  EN G 
Sbjct: 520 LARFGRLDKAWKTVKDMPME-PTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGS 578

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           Y ++SNIYA AGR   V  +R++M + G+KK  G S V+  +    F +GD+SHP + +I
Sbjct: 579 YTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQI 638

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           Y  L+ L+ R +  GYVPE+  A+H+++EEE+   L  HSEKLALA+GL+ T PG  IRI
Sbjct: 639 YALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRI 698

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCHSA  +IS   + EI+VRD  RFHHFK GSCSC  YW
Sbjct: 699 TKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 154/346 (44%), Gaps = 59/346 (17%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M+ +     ++T   V+K+C  L     G A H  +  +G++S++ +  ALV  Y++  +
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 157 VDVARKVFDRMPDK---SVVAWNSMISGYEQNGFAKEAIGLFNLM------RDFGVNPDS 207
           ++ A  +FD +  +    V++WNS++S + ++  A  A+ LF+ M      +      D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
            + V +L AC  L  +   + VH   +  G  ++V +  +LI+ YA+CG +  A ++F+M
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH------------------------- 302
           M   +V++W AM++GY   G    A ELF  MR                           
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 303 ----------GVRPNNVTFVAVLSACAHAGLVQEGHRVFA--------SMRQEYGLLPGV 344
                     G  PN VT ++VLSACA  G   +G  + A        ++  ++G   G 
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFG---GE 297

Query: 345 EHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           +  +     ++D++ +      A     D+  E+     WT M+G 
Sbjct: 298 DEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGG 343



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 22/216 (10%)

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G   D  T   VL AC +L     G   H  I   G + NV +  +L+ MY+RCG++ +A
Sbjct: 5   GTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 64

Query: 262 REIFDMMSEL---NVIAWTAMISGYGMHGYGTEAVELFHRM------RAHGVRPNNVTFV 312
             IFD +++    +VI+W +++S +        A++LF +M      +    R + ++ V
Sbjct: 65  SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 124

Query: 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----V 367
            +L AC     V +   V  +  +  G    V     ++D + + GL+  A K       
Sbjct: 125 NILPACGSLKAVPQTKEVHGNAIRN-GTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEF 183

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
           KDV+        W AM+       NF    E+ +++
Sbjct: 184 KDVVS-------WNAMVAGYSQSGNFKAAFELFKNM 212


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/560 (40%), Positives = 339/560 (60%), Gaps = 36/560 (6%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCD-AGFITYAQRIFFCIPS--PDSFLFNTLIIR 80
           L+QVHA +I      S   LT++  LVC       YAQ+IF C+    P++F++N+ +  
Sbjct: 44  LRQVHAQIIKTNAPLSILPLTRV-GLVCAFTPSFHYAQQIFECVEKQKPETFVWNSCLKA 102

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            ++ +   D+++ + R+   ++ P  +T S+V+++C +L  L+ GR +H  V   G+ S+
Sbjct: 103 LAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSN 162

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN------------------------ 176
           L++Q  +V+ YA    +  AR +F++MP + VV WN                        
Sbjct: 163 LYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPE 222

Query: 177 -------SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
                  SMI+GY Q G AKEAI LF  M + GV  +  T V VLAACA LG +DLG  +
Sbjct: 223 RNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRI 282

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           HE+    G   NV ++ +LI+MY +CG + +A ++F+ M E  V++W+AMI G  MHG  
Sbjct: 283 HEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRA 342

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
            EA+ LF  M   G+ PN VTF+ +L AC+H GL+ EG R FASM ++YG++P +EH+ C
Sbjct: 343 EEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGC 402

Query: 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
           MVDL  RAGLL+EA++F+ + +  KP   VW A+LGAC++HKN ++  E  +HLL ++P 
Sbjct: 403 MVDLLSRAGLLHEAHEFILN-MPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPL 461

Query: 410 NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPN 469
           N G+YV+LSNIYA AGR +    VR  M  + +KK  G+S++ VD   + F  G++SHP+
Sbjct: 462 NDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPD 521

Query: 470 TNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGM 529
           T +I+Q  +EL+   R  GYVP +   + ++EE E+   +  HSEKLAL FGLM T    
Sbjct: 522 TEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAET 581

Query: 530 TIRIVKNLRMCVDCHSAIKF 549
            IRI+KNLR+C DCHSA + 
Sbjct: 582 PIRIMKNLRICEDCHSAFQI 601


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/577 (38%), Positives = 343/577 (59%), Gaps = 9/577 (1%)

Query: 10  AYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
            Y  +LKA   L  ++   +VH+ ++V G      +   LL++    G +  A+ +F  +
Sbjct: 163 TYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRM 222

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
              D   +NT+I   +K   S  + L +  M  + +     T   ++ +CA L  +  G+
Sbjct: 223 AERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGK 282

Query: 127 AVHCHVF---VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
            +H +     +  Y+       +L+  Y   N +  AR++F+R+  K  V+WNSMI GY 
Sbjct: 283 VIHGYAVRNSIGNYNK--FFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYA 340

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           +NG A E++ LF  M   G  PD  T + VL AC Q+  +  G  +H ++V +G D N +
Sbjct: 341 RNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTI 400

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           + T+L++MY++CG+++ +R +FD M + ++++W+AM++GYG+HG G EA+ +   M+A+ 
Sbjct: 401 VGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANS 460

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           V P+N  F ++LSAC+HAGLV EG  +F  M +EY + P + H+ CMVDL GRAG L+EA
Sbjct: 461 VIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEA 520

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
           Y  ++  +  KP   +W A+L A ++HKN  L    A+ +  + P+    Y+ LSNIYA 
Sbjct: 521 YVIIR-TMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAA 579

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
             R D VE VR ++ +KGLKK  G S +E+D   + F +GDKSH  T +IY  L+EL  +
Sbjct: 580 EKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQ 639

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
            +EAGY P++    +++EEE +E  L  HSE+LA+AF L+ T PG  IRI KNLR+C DC
Sbjct: 640 LKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPGTVIRITKNLRVCGDC 699

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           H+  K IS  T REII+RD  RFHHF +G CSC DYW
Sbjct: 700 HTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 127/404 (31%), Positives = 211/404 (52%), Gaps = 11/404 (2%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
            K  QQ+HAH+I      + + L TKL +     G ++ A+ IF  I   +SFL+N +I 
Sbjct: 75  FKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIR 134

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             +       SL+ YR M+       N+T+  V+K+C  L ++ +GR VH  V V G +S
Sbjct: 135 GYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLES 194

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D++V  +L+  YAK  ++  AR VFDRM ++ + +WN+MISGY +N  +  A  +F+LM 
Sbjct: 195 DIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMG 254

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL-DVNVVLATSLINMYARCGNV 258
             G+  D TT + +L+ACA L  +  G+ +H + V   + + N     SLI MY  C  +
Sbjct: 255 KAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCM 314

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
             AR +F+ +   + ++W +MI GY  +G   E++ LF RM   G  P+ VTF+AVL AC
Sbjct: 315 VDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGAC 374

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
                ++ G  + + + ++ G          +VD++ + G L  +    + V  E P  +
Sbjct: 375 DQIAALRYGMSIHSYLVKK-GFDANTIVGTALVDMYSKCGSLACS----RRVFDEMPDKS 429

Query: 379 V--WTAMLGACKMHKNFDLGVEVAEHLL--SVEPENPGHYVMLS 418
           +  W+AM+    +H      + + + +   SV P+N     +LS
Sbjct: 430 LVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILS 473


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/540 (40%), Positives = 340/540 (62%), Gaps = 8/540 (1%)

Query: 45  KLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSL-LFYRRMIVSNIS 103
           +L+S+    G+   AQR+F  +P+ D   +N+L+   S   +    L  F R    S   
Sbjct: 179 RLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQ 238

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P+  T  +V+ +CA +  L+ G+++H  V   G      V  +L+N Y K   +D A ++
Sbjct: 239 PNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQL 298

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F+ MP +S+V+WNSM+  +  NG+A++ + LFNLM+  G+NPD  T V +L AC   G  
Sbjct: 299 FEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTG-- 356

Query: 224 DLGRW---VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
            LGR    +H +I   G + ++++AT+L+N+YA+ G ++ + +IF+ + + + IAWTAM+
Sbjct: 357 -LGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAML 415

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GY +H  G EA++LF  M   GV  ++VTF  +LSAC+H+GLV+EG + F  M + Y +
Sbjct: 416 AGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRV 475

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P ++H+ CMVDL GR+G L +AY+ +K +  E P+  VW A+LGAC+++ N +LG EVA
Sbjct: 476 EPRLDHYSCMVDLLGRSGRLEDAYELIKSMPME-PSSGVWGALLGACRVYGNVELGKEVA 534

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           E LLS++P +  +Y+MLSNIY+ AG       VR +M ++ L ++ G S +E   K + F
Sbjct: 535 EQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRF 594

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
            +GD+ HP ++EI+  L+EL+ +  EAG  P++E  +H+++EE +   +  HSEKLA+AF
Sbjct: 595 VVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAF 654

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+ T  G+ + I KNLR+C DCHS  KF S+   R II+RD  RFHHF  G CSC DYW
Sbjct: 655 GLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 198/402 (49%), Gaps = 30/402 (7%)

Query: 64  FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAV--IKSCAHLSI 121
           F   +P  F   T    +S  +  T   +F  ++  S++   +   S V  I SC  +S 
Sbjct: 98  FPTIAPSRFGTLTSFPNSSNDSTRTKVAVFLGKLHNSSLLADSIVQSLVFAISSCTSVSY 157

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
            +   A+H  V  S   SD  +   LV+ Y K    + A+++FD MP++ +V+WNS++SG
Sbjct: 158 CS---AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSG 214

Query: 182 YEQNGFAKEAIGLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
               G+    +  F  MR + G  P+  T + V++ACA +G +D G+ +H  +V  G+  
Sbjct: 215 LSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSG 274

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
              +  SLINMY + G +  A ++F+ M   ++++W +M+  +  +GY  + ++LF+ M+
Sbjct: 275 KAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMK 334

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G+ P+  T VA+L AC   GL ++   + A + +  G    +     +++L+ + G L
Sbjct: 335 RAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR-CGFNADIIIATALLNLYAKLGRL 393

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMH-------KNFDL----GVEVAE----HLLS 405
           N +    +++  +      WTAML    +H       K FDL    GVEV      HLLS
Sbjct: 394 NASEDIFEEI--KDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLS 451

Query: 406 ------VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
                 +  E   ++ ++S +Y +  R+D    + +++ + G
Sbjct: 452 ACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSG 493



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 163/342 (47%), Gaps = 14/342 (4%)

Query: 4   KQPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           +QP+     +++ A   +  L +   +H  ++  G      ++  L+++    GF+  A 
Sbjct: 237 RQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAAS 296

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           ++F  +P      +N++++ ++   ++   +  +  M  + I+P   T  A++++C    
Sbjct: 297 QLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTG 356

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
           +     ++H ++   G+++D+ +  AL+N YAK   ++ +  +F+ + D+  +AW +M++
Sbjct: 357 LGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLA 416

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY  +   +EAI LF+LM   GV  D  T   +L+AC+  G ++ G+   E I+ +   V
Sbjct: 417 GYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFE-IMSEVYRV 475

Query: 241 NVVLA--TSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISG---YGMHGYGTEAVE 294
              L   + ++++  R G +  A E+   M  E +   W A++     YG    G E  E
Sbjct: 476 EPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAE 535

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
               +     R N +    + SA   AGL +   +V   M++
Sbjct: 536 QLLSLDPSDHR-NYIMLSNIYSA---AGLWRXASKVRXLMKE 573


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/539 (39%), Positives = 334/539 (61%), Gaps = 6/539 (1%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN 101
           ++  L+++    G +  AQ +F  +P  +   + T+I   S A  +  +L F   M+   
Sbjct: 2   LINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREG 61

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           + P+ +T+S+V+++C  L   NL R +HC +   G DSD+ V++AL++ Y++   ++ A 
Sbjct: 62  VRPNMFTYSSVLRACDGL--FNL-RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENAL 118

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           +VFD M    +V W+S+I+G+ QN    EA+ LF  M+  G     TT   VL AC  L 
Sbjct: 119 RVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLA 178

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            ++LGR VH  ++    D +++L  +L++MY +CG++  A  +F  M E +VI+W+ MI+
Sbjct: 179 LLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIA 236

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           G   +GY  EA++LF  M+  G++PN VT V VL AC+HAGLV+EG   F SM++ +G+ 
Sbjct: 237 GLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGID 296

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           PG EH+ CM+DL GRAG L+EA   + ++  E P    W A+L AC++H+N D+ +  A+
Sbjct: 297 PGREHYGCMIDLLGRAGRLSEAVDLINEMECE-PDAVTWRALLNACRVHRNVDVAIHAAK 355

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
            +L ++P++ G YV+LSNIYA   R + V  VR  M  +G+KK  G S +EV ++ + F 
Sbjct: 356 QILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFI 415

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
           +GD+SHP   EI   L++L+ +    GYVP++   + +LE E+ + SLRYHSEKLA+ FG
Sbjct: 416 LGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFG 475

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           LM    G TIRI KNLR+C DCH   K ++    R I++RD +R+HHF+ G CSC D+W
Sbjct: 476 LMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 156/284 (54%), Gaps = 4/284 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           +P+   Y ++L+A   L  L+Q+H  +I  G      + + L+ +    G +  A R+F 
Sbjct: 63  RPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFD 122

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            + + D  +++++I   ++ +   ++L  ++RM  +       T ++V+++C  L++L L
Sbjct: 123 EMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLEL 182

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           GR VH HV    YD DL +  AL++ Y K  +++ A  VF RM +K V++W++MI+G  Q
Sbjct: 183 GRQVHVHVL--KYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQ 240

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVV 243
           NG++KEA+ LF  M+  G+ P+  T V VL AC+  G ++ G  + H      G+D    
Sbjct: 241 NGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGRE 300

Query: 244 LATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
               +I++  R G +S+A ++ + M  E + + W A+++   +H
Sbjct: 301 HYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVH 344


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/526 (40%), Positives = 331/526 (62%), Gaps = 10/526 (1%)

Query: 58  YAQRIFFCIPSP-DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC 116
           YA  +    P P D F +N  +IR+   +  + +L  +  M  +N+   ++TF  ++KS 
Sbjct: 50  YAAAVLLRFPIPGDPFPYNA-VIRHVALHAPSLALALFSHMHRTNVPFDHFTFPLILKS- 107

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
              S LN    +H  V   G+ S+++VQ AL+N Y  S ++  + K+FD MP + +++W+
Sbjct: 108 ---SKLN-PHCIHTLVLKLGFHSNIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWS 163

Query: 177 SMISGYEQNGFAKEAIGLFNLM--RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           S+IS + + G   EA+ LF  M  ++  + PD    + V++A + LG ++LG WVH FI 
Sbjct: 164 SLISCFAKRGLPDEALTLFQQMQLKESDILPDGVVMLSVISAVSSLGALELGIWVHAFIS 223

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             G+++ V L ++LI+MY+RCG++ ++ ++FD M   NV+ WTA+I+G  +HG G EA+E
Sbjct: 224 RIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALE 283

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
            F+ M   G++P+ + F+ VL AC+H GLV+EG RVF+SM  EYG+ P +EH+ CMVDL 
Sbjct: 284 AFYDMVESGLKPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLL 343

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
           GRAG++ EA+ FV+  +  +P   +W  +LGAC  H    L  +  E +  ++P + G Y
Sbjct: 344 GRAGMVLEAFDFVEG-MRVRPNSVIWRTLLGACVNHNLLVLAEKAKERIKELDPHHDGDY 402

Query: 415 VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIY 474
           V+LSN Y   G   + E VRN M +  + K  G S V +DQ  + F  GD SHP   EI 
Sbjct: 403 VLLSNAYGGVGNWVKKEGVRNSMRESKIVKEPGLSLVHIDQVAHEFVSGDNSHPQWEEIT 462

Query: 475 QYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIV 534
           ++L  ++   +  GY P +++ +H+++EEE+E+SL YHSEKLA+AF L+      TIR++
Sbjct: 463 RFLGSVIDTVKLGGYTPSTKNVLHDIQEEEKEHSLGYHSEKLAVAFVLLYHRDRKTIRVI 522

Query: 535 KNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KNLR+C DCHS +K +S   +R+I++RDR RFHHF++GSCSC D+W
Sbjct: 523 KNLRICYDCHSFMKHVSGFFDRDIVIRDRSRFHHFRKGSCSCRDFW 568


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/536 (39%), Positives = 333/536 (62%), Gaps = 4/536 (0%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           L QV+ +  V   G++  + +K      ++ ++   +++F  +P  D   +NT+I  N++
Sbjct: 117 LYQVNTYKKVFDEGKTSDVYSKKEK---ESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQ 173

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
                D+L+  R M  +++ P ++T S+V+   A    L  G+ +H +   +GYD+D+ +
Sbjct: 174 NGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFI 233

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
            ++L++ YAK   VD + +VF  +P    ++WNS+I+G  QNG   E +  F  M    +
Sbjct: 234 GSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKI 293

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            P+  +   ++ ACA L  + LG+ +H +I+    D NV +A++L++MYA+CGN+  AR 
Sbjct: 294 KPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARW 353

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           IFD M   ++++WTAMI GY +HG+  +A+ LF RM   GV+PN V F+AVL+AC+HAGL
Sbjct: 354 IFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGL 413

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           V E  + F SM Q+Y ++PG+EH+  + DL GR G L EAY+F+ D+  E P  +VW+ +
Sbjct: 414 VDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIE-PTGSVWSTL 472

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           L AC++HKN +L  +V++ L +V+P+N G YV+LSNIY+ AGR      +R  M  KG+K
Sbjct: 473 LAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMK 532

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K    S +E+  K + F  GDKSHP  + I + L  L+ +    GYV ++   +H++EEE
Sbjct: 533 KKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEE 592

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           ++ Y L  HSE+LA+ FG++ T  G TIR+ KNLR+CVDCH+A KFIS    REI+
Sbjct: 593 QKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIV 648



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/331 (20%), Positives = 135/331 (40%), Gaps = 48/331 (14%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M+ S   P +  F +V+KSC  +  L  G +VH  +   G   DL+   AL+N Y+K   
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSK--- 57

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL-- 214
                             W S+  G  Q     + +G     R+ G   +S    C L  
Sbjct: 58  -----------------FW-SLEEGGVQRFCDSKMLGGIPEPREIGKCSNSHDLPCELDE 99

Query: 215 --AACAQLGDIDLGRWV------HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             A   Q GD++    +      ++ +  +G   +V       + Y     +   R++F+
Sbjct: 100 RVAGIDQNGDLNQMSNILYQVNTYKKVFDEGKTSDVYSKKEKESYY-----LGSLRKVFE 154

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
           MM + ++++W  +ISG   +G   +A+ +   M    +RP++ T  +VL   A    + +
Sbjct: 155 MMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLK 214

Query: 327 GHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           G  +       Y +  G +  V     ++D++ +   ++++ +     +  +     W +
Sbjct: 215 GKEIHG-----YAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVF--YMLPQHDGISWNS 267

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
           ++  C  +  FD G++  + +L +    P H
Sbjct: 268 IIAGCVQNGMFDEGLKFFQQML-IAKIKPNH 297


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/482 (43%), Positives = 310/482 (64%), Gaps = 5/482 (1%)

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           ++P+   ++++++SC     +  G+ +H  V ++G+  D  +   LVN Y   +++  AR
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
            +FDR+P  ++  WN +I GY  NG  + A+ L+  M D+G+ PD+ T   VL ACA L 
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALS 190

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM---SELNVIAWTA 278
            I+ GR +HE +V  G + +V +  +LI+MYA+CG V  ARE+FD +     + V++W A
Sbjct: 191 AIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNA 250

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           MI+GY MHG+ TEA++LF  M     +P+++TFV VLSAC+H GL++EG   F +M ++Y
Sbjct: 251 MITGYAMHGHATEALDLFEEMN-RVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDY 309

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
            + P V+H+ CMVDL G +G L+EAY  +   +   P   VW A+L +CK+H N +LG  
Sbjct: 310 KIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQ-MKVLPDSGVWGALLNSCKIHANVELGEI 368

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458
             E L+ +EP++ G+YV+LSNIYA AG+ + V  +R +M  + LKK +  S +EV  K +
Sbjct: 369 ALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVH 428

Query: 459 LFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLAL 518
            F  GD SHP ++EIY  L+ + G  +EAGY P + S  H++E++E+   +  HSE+LA+
Sbjct: 429 AFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAI 488

Query: 519 AFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLD 578
           AFGL+ T PG  + I KNLR+C DCH AIKFIS  T REI VRD  R+HHFK G CSC D
Sbjct: 489 AFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGD 548

Query: 579 YW 580
           YW
Sbjct: 549 YW 550



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 156/290 (53%), Gaps = 9/290 (3%)

Query: 6   PHSPAYEAILK---AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    Y ++L+   A   +KP +Q+HA + +AG+G    + TKL++L C    ++ A+ +
Sbjct: 73  PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  IP  + FL+N LI   +       ++  Y +M    + P N+TF  V+K+CA LS +
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAI 192

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS---VVAWNSMI 179
             GR +H HV  +G++ D+ V AAL++ YAK   V  AR+VFD++  +    VV+WN+MI
Sbjct: 193 EHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMI 252

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GL 238
           +GY  +G A EA+ LF  M      PD  T V VL+AC+  G ++ G    E ++    +
Sbjct: 253 TGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKI 311

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSEL-NVIAWTAMISGYGMHG 287
           D  V   T ++++    G + +A  +   M  L +   W A+++   +H 
Sbjct: 312 DPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHA 361


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/565 (39%), Positives = 340/565 (60%), Gaps = 10/565 (1%)

Query: 20   RLKPLQQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
            R+K  + VH  +I          L   L+ L  D G +    ++F  I       +NTLI
Sbjct: 514  RVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLI 573

Query: 79   IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
               ++     ++LL + +M    + P +Y+ ++ + +C  +S   LG  +H ++  +G  
Sbjct: 574  SIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNF 633

Query: 139  SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
            +D  VQ AL++ YAK   V  A K+F+++ +KS+V WNSMI G+ QNG++ EAI LF+ M
Sbjct: 634  NDF-VQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQM 692

Query: 199  RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
                V  D  T + V+ AC+ LG ++ G+WVH  ++  GL  +  L T+L +MY++CG +
Sbjct: 693  YMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGEL 752

Query: 259  SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
              A  +FD MSE ++++W+ MI+GYGMHG     + LF++M   G++PN++TF+ +LSAC
Sbjct: 753  QMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSAC 812

Query: 319  AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
            +HAG V+EG   F SM  E+G+ P  +H  CMVDL  RAG LN AY+ +  +    P PA
Sbjct: 813  SHAGAVEEGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSL----PFPA 867

Query: 379  ---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
               +W A+L  C++HK  D+   + ++LL V+  + G+Y +LSNIYA  G  D+   VR+
Sbjct: 868  NSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRS 927

Query: 436  IMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESES 495
            +M  KGL+K  GYST+E+D+K Y F  GD SH  T +IY++L+          Y  E ++
Sbjct: 928  MMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDN 987

Query: 496  AMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
            ++    +  +E ++  HSEKLA+AFG++ T PG T+RI KNLR+C DCHS  K  S  T 
Sbjct: 988  SIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITG 1047

Query: 556  REIIVRDRLRFHHFKRGSCSCLDYW 580
            REII+RD  RFH F+ GSCSC DYW
Sbjct: 1048 REIIMRDLNRFHCFRNGSCSCNDYW 1072



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 130/479 (27%), Positives = 233/479 (48%), Gaps = 62/479 (12%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII---- 79
           L Q+HAHL + G  R     TKL+      G    ++R+F   P PDSF++  LI     
Sbjct: 364 LTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVW 423

Query: 80  ------------------RNSKANF-----------------------STDSLLFYRRMI 98
                             +   +NF                       +++ L  + +MI
Sbjct: 424 GGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMI 483

Query: 99  VSNISPSNYTFSAVIKSCAHLSILNL--------GRAVHCHVFVSGYDSDLH-VQAALVN 149
              + P + T  +V ++C+ L  L L        GR+VH  V     D +L  +  AL+ 
Sbjct: 484 SEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALME 543

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            YA + N+    KVF+ + +K++++WN++IS + +NG  +EA+ LF  M+  G+ PDS +
Sbjct: 544 LYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYS 603

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
               L+AC  +    LG  +H +I+  G + N  +  +LI+MYA+CG V  A ++F+ + 
Sbjct: 604 LASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIK 662

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
           E +++ W +MI G+  +GY  EA+ LF +M  + V+ + +TF++V+ AC+H G +++G  
Sbjct: 663 EKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKW 722

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
           V   +   YGL         + D++ + G L  A+  V D + E+   + W+ M+    M
Sbjct: 723 VHHKLIM-YGLRKDSYLDTALTDMYSKCGELQMAHG-VFDRMSERSIVS-WSVMIAGYGM 779

Query: 390 HKNFDLGVEVAEHLL--SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK-KH 445
           H   +  + +   +L   ++P +     +LS   + AG ++  ++  N M + G++ KH
Sbjct: 780 HGQINATISLFNQMLGSGIKPNDITFMHILSAC-SHAGAVEEGKLYFNSMSEFGVEPKH 837



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 145/333 (43%), Gaps = 63/333 (18%)

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           K CA  + L     +H H+F++G          L+  YA+    + +++VFD  P     
Sbjct: 356 KRCATSTTLT---QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSF 412

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLM--------------------RDFG----------- 202
            W  +I  Y   GF +EA+ L++ M                      FG           
Sbjct: 413 MWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQA 472

Query: 203 --------------VNPDSTTCVCVLAACAQLGDIDLGRW--------VHEFIVGQGLDV 240
                         V PDS T + V  AC++LG + LGR         VH F++ + +D 
Sbjct: 473 SEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDP 532

Query: 241 NV-VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            +  L  +L+ +YA  GN+    ++F+ + E  +++W  +IS +  +G   EA+ LF +M
Sbjct: 533 ELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQM 592

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
           +  G+ P++ +  + LSAC      Q G ++   + +       V++   ++D++ + G 
Sbjct: 593 QTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQN--ALIDMYAKCGF 650

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKN 392
           ++ A K  + +  ++ +   W +M+  C   +N
Sbjct: 651 VHSANKMFEKI--KEKSLVTWNSMI--CGFSQN 679


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/581 (37%), Positives = 347/581 (59%), Gaps = 4/581 (0%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLS--LVCDAGFITYAQ 60
           N + +   + ++LK    ++  ++VHAH++  G        + L++   +   G + YA 
Sbjct: 26  NAKFNEQGWLSLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYAC 85

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
            IF  I  P SF +NT+I  N  +    ++LL Y  M+   I P N+T+  V+K+C+ L 
Sbjct: 86  SIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLV 145

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L  G  +H HVF +G + D+ VQ  L++ Y K   ++ A  VF++M +KSV +W+S+I 
Sbjct: 146 ALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIG 205

Query: 181 GYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
            +       E + L  ++ R+     + +  V  L+AC  LG  +LGR +H  ++    +
Sbjct: 206 AHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISE 265

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
           +NVV+ TSLI+MY +CG++ K   +F  M+  N  ++T MI+G  +HG G EA+ +F  M
Sbjct: 266 LNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDM 325

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
              G+ P++V +V VLSAC+HAGLV+EG + F  M+ E+ + P ++H+ CMVDL GRAG+
Sbjct: 326 LEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGM 385

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L EAY  +K  +  KP   VW ++L ACK+H N ++G   A+++  +   NPG Y++L+N
Sbjct: 386 LKEAYDLIKS-MPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPGDYLVLAN 444

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           +YA A +   V  +R  M++K L +  G+S VE ++  Y F   DKS P    IY  + +
Sbjct: 445 MYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQ 504

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           +  + +  GY P+    + +++E+E+   L++HS+KLA+AF L++TS G  +RI +NLRM
Sbjct: 505 MEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPVRISRNLRM 564

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCH+  KFISV   REI VRD  RFHHFK G+CSC DYW
Sbjct: 565 CNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/540 (37%), Positives = 338/540 (62%), Gaps = 5/540 (0%)

Query: 41  SMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS 100
           +M+T LL        +  A+R+F  +   DS  + T++   ++    +++L  +RRM   
Sbjct: 211 TMITGLLR----CKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQ 266

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
            I+   YTF +++ +C  LS L  G+ +H ++  + YD ++ V +ALV+ Y+K  ++ +A
Sbjct: 267 GIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLA 326

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
             VF RM  K++++W ++I GY QNG ++EA+ +F+ M+  G++PD  T   V+++CA L
Sbjct: 327 ETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANL 386

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             ++ G   H   +  GL   + ++ +L+ +Y +CG++  A  +FD MS  + ++WTA++
Sbjct: 387 ASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALV 446

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           SGY   G   E ++LF +M A GV+P+ VTF+ VLSAC+ AG V++G   F SM++++G+
Sbjct: 447 SGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGI 506

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
           +P  +H+ CM+DL+ R+G L EA +F+K  +   P    W  +L AC++  + ++G   A
Sbjct: 507 VPIDDHYTCMIDLYSRSGKLKEAEEFIKQ-MPMHPDAIGWGTLLSACRLRGDMEIGKWAA 565

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           E+LL ++P+NP  YV+L +++A  G+ + V  +R  M  + +KK  G S ++   K ++F
Sbjct: 566 ENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIF 625

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
           S  D+SHP +  IY+ L+ L  +  E GY P+  S +H++ + ++ + + +HSEKLA+AF
Sbjct: 626 SADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAF 685

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+     M IRIVKNLR+CVDCH+A KFIS  T R+I+VRD +RFH F  G CSC D+W
Sbjct: 686 GLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 221/479 (46%), Gaps = 80/479 (16%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVA---GYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P S  Y A+L A  R +P      H ++     +     +L  LL+    AG    A+R
Sbjct: 3   RPLSSQYAALLSAAARTEPHVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHARARR 62

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFY----RRMIVS----------------- 100
           +F  +P P+ F +N L+   + A   +D    +    +R IVS                 
Sbjct: 63  VFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQA 122

Query: 101 ------------NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
                       ++ PS  T S ++ + + L    LG+  HC +   G+ ++  V + LV
Sbjct: 123 VRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLV 182

Query: 149 NFYAKSNNVDVARKVFDRMPDKSVVAWNSMI----------------------------- 179
           + YAK + V  A++ FD +  K+VV +N+MI                             
Sbjct: 183 DMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTT 242

Query: 180 --SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
             +G+ QNG   EA+ +F  MR  G+  D  T   +L AC  L  ++ G+ +H +I+   
Sbjct: 243 MVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTR 302

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
            D NV + ++L++MY++C ++  A  +F  M+  N+I+WTA+I GYG +G   EAV +F 
Sbjct: 303 YDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFS 362

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDL 353
            M+  G+ P++ T  +V+S+CA+   ++EG +          L+ G+ H++     +V L
Sbjct: 363 EMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHC-----LALVSGLMHYITVSNALVTL 417

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPEN 410
           +G+ G + +A++   ++         WTA++            +++ E +L+  V+P+ 
Sbjct: 418 YGKCGSIEDAHRLFDEMSFHDQVS--WTALVSGYAQFGRAKETIDLFEKMLAKGVKPDG 474



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 139/282 (49%), Gaps = 5/282 (1%)

Query: 11  YEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           + +IL A   L  L+Q   +HA++I   Y  +  + + L+ +      I  A+ +F  + 
Sbjct: 275 FGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMT 334

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             +   +  LI+   +   S +++  +  M    I P +YT  +VI SCA+L+ L  G  
Sbjct: 335 CKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQ 394

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
            HC   VSG    + V  ALV  Y K  +++ A ++FD M     V+W +++SGY Q G 
Sbjct: 395 FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGR 454

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR-WVHEFIVGQGLDVNVVLAT 246
           AKE I LF  M   GV PD  T + VL+AC++ G ++ GR + H      G+       T
Sbjct: 455 AKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYT 514

Query: 247 SLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHG 287
            +I++Y+R G + +A E    M    + I W  ++S   + G
Sbjct: 515 CMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRG 556


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/564 (36%), Positives = 342/564 (60%), Gaps = 6/564 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDA---GFITYAQRIFFCIPSPDSFLFNTL 77
           L+ L Q+ A+ I   +    S + KL++   ++     ++YA+ +F  +  PD  +FN++
Sbjct: 42  LRELMQIQAYAI-KSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSM 100

Query: 78  IIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
               S+     +    +  ++   I P NYTF +++K+CA    L  GR +HC     G 
Sbjct: 101 ARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGL 160

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
           D +++V   L+N Y +  +VD AR VFDR+ +  VV +N+MI+GY +     EA+ LF  
Sbjct: 161 DDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFRE 220

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M+   + P+  T + VL++CA LG +DLG+W+H++         V + T+LI+M+A+CG+
Sbjct: 221 MQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGS 280

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           +  A  IF+ M   +  AW+AMI  Y  HG   +++ +F RMR+  V+P+ +TF+ +L+A
Sbjct: 281 LDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNA 340

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           C+H G V+EG + F+ M  ++G++P ++H+  MVDL   AG L +AY+F+ D +   P P
Sbjct: 341 CSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFI-DKLPISPTP 399

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
            +W  +L AC  H N DL  +V+E +  ++  + G YV+LSN+YA   + + V+ +R +M
Sbjct: 400 MLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVM 459

Query: 438 IQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM 497
             +   K  G S++EV+   + F  GD     T ++++ LDE++   + +GYVP++   +
Sbjct: 460 KDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVV 519

Query: 498 H-ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNR 556
           H  + ++E+E +LRYHSEKLA+ FGL+ T PG TIR+VKNLR+C DCH+A K IS+   R
Sbjct: 520 HANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGR 579

Query: 557 EIIVRDRLRFHHFKRGSCSCLDYW 580
           +++ RD  RFHHF+ G CSC D+W
Sbjct: 580 KVVXRDVQRFHHFEDGKCSCGDFW 603


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/575 (37%), Positives = 350/575 (60%), Gaps = 6/575 (1%)

Query: 11  YEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y+A+L A      L+  Q+VHAH+I   Y  +  + T+LL        +  A+++   +P
Sbjct: 54  YDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMP 113

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             +   +  +I R S+   S+++L  +  M+ S+  P+ +TF+ V+ SC   S L LG+ 
Sbjct: 114 EKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQ 173

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H  +    YDS + V ++L++ YAK+  ++ AR++F+ +P++ VV+  ++I+GY Q G 
Sbjct: 174 IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGL 233

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            +EA+ +F  ++  G+ P+  T   +L A + L  +D G+  H  ++ + L    VL  S
Sbjct: 234 DEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS 293

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRP 306
           LI+MY++CGN+S A+ +FD M E   I+W AM+ GY  HG G E +ELF  MR    V+P
Sbjct: 294 LIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKP 353

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           + VT +AVLS C+H  +   G  ++  M   EYG+ P  EH+ C+VD+ GRAG ++EA++
Sbjct: 354 DAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFE 413

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
           F+K  +  KP   V  ++LGAC++H + D+G  V   L+ +EPEN G+YV+LSN+YA AG
Sbjct: 414 FIKR-MPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAG 472

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
           R + V  VR +M+QK + K  G S ++ +Q  + F   D++HP   E+   + E+  + +
Sbjct: 473 RWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMK 532

Query: 486 EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
           +AGYVP+    +++++EE++E  L  HSEKLAL FGL+ T  G+ IR+ KNLR+CVDCH+
Sbjct: 533 QAGYVPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHN 592

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             K  S    RE+ +RD+ RFH   +G CSC DYW
Sbjct: 593 FAKIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/579 (38%), Positives = 345/579 (59%), Gaps = 4/579 (0%)

Query: 5   QPHSPAYEAILKAG---PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+  A  ++LKA    P +   + +H   I         +   LL +    G I  A+ 
Sbjct: 260 KPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARL 319

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            F  IP  D  L + +I R +++N +  +   + R++ S++ P+ Y+ S+V+++C ++  
Sbjct: 320 AFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQ 379

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L+ G+ +H H    G++SDL V  AL++FYAK N++D + K+F  + D + V+WN+++ G
Sbjct: 380 LDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVG 439

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + Q+G  +EA+ +F  M+   +     T   VL ACA    I     +H  I     + +
Sbjct: 440 FSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNND 499

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            V+  SLI+ YA+CG +  A ++F  + E ++I+W A+ISGY +HG   +A+ELF RM  
Sbjct: 500 TVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNK 559

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             V  N++TFVA+LS C+  GLV  G  +F SMR ++G+ P +EH+ C+V L GRAG LN
Sbjct: 560 SNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLN 619

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           +A +F+ D I   P+  VW A+L +C +HKN  LG   AE +L +EP++   YV+LSN+Y
Sbjct: 620 DALQFIGD-IPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMY 678

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AG +D+V ++R  M   G++K  G S VE+  + + FS+G   HP+   I   L+ L 
Sbjct: 679 AAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLN 738

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            +    GY+P+    +H++++E++   L  HSE+LALA+GL+ T PG  IRI+KNLR C+
Sbjct: 739 LKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCL 798

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+A   IS    REIIVRD  RFHHF+ G CSC DYW
Sbjct: 799 DCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 199/410 (48%), Gaps = 11/410 (2%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           L SLV DA      + +F  I   D+ ++  ++   S+ +   ++   + +M VS   P+
Sbjct: 209 LCSLVSDA------EHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPN 262

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            +  ++V+K+   L  + LG+ +H     +  D++ HV  AL++ YAK  ++  AR  F+
Sbjct: 263 PFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFE 322

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            +P   V+  + MIS Y Q+   ++A  LF  +    V P+  +   VL AC  +  +D 
Sbjct: 323 MIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDF 382

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ +H   +  G + ++ +  +L++ YA+C ++  + +IF  + + N ++W  ++ G+  
Sbjct: 383 GKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQ 442

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
            G G EA+ +F  M+A  +    VT+ +VL ACA    ++   ++  S+ +       V 
Sbjct: 443 SGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVI 502

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
            +  ++D + + G + +A K  + ++        W A++    +H      +E+ + +  
Sbjct: 503 GN-SLIDTYAKCGYIRDALKVFQHLMERDIIS--WNAIISGYALHGQAADALELFDRMNK 559

Query: 406 VEPE-NPGHYVMLSNIYALAGRMDR-VEVVRNIMIQKGLKKHVGYSTVEV 453
              E N   +V L ++ +  G ++  + +  ++ I  G+K  + + T  V
Sbjct: 560 SNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIV 609



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 147/309 (47%), Gaps = 4/309 (1%)

Query: 25  QQVHAHLIV-AGYGRSRSMLTK-LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNS 82
           + VH H++   G GR        LL++    G +  A+R+F  +P  +   F TL+  ++
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHA 138

Query: 83  -KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
            + +F   + LF RR+       + +  + ++K    +    L   VH   +  G+D + 
Sbjct: 139 QRGDFEAAAALF-RRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNA 197

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V + L++ Y+  + V  A  VF+ +  K  V W +M+S Y +N   + A  +F+ MR  
Sbjct: 198 FVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVS 257

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G  P+      VL A   L  + LG+ +H   +    D    +  +L++MYA+CG++  A
Sbjct: 258 GCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDA 317

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           R  F+M+   +VI  + MIS Y       +A ELF R+    V PN  +  +VL AC + 
Sbjct: 318 RLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNM 377

Query: 322 GLVQEGHRV 330
             +  G ++
Sbjct: 378 VQLDFGKQI 386


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/579 (38%), Positives = 350/579 (60%), Gaps = 4/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P++  +  +LKA   L+     + VH  ++   Y R   +   LL L    G    A R
Sbjct: 144 KPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWR 203

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            F  +P  D   ++ +I R +++  S  +L  + +M  + + P+ +TFS+V+++ A +  
Sbjct: 204 AFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIES 263

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L+L + +H H   +G  +D+ V  AL+  YAK   ++ + ++F+ + D++ V+WN++I  
Sbjct: 264 LDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVS 323

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q G  + A+ LF+ M  + V     T   +L ACA L  ++LG  VH          +
Sbjct: 324 YVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQD 383

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V +  +LI+MYA+CG++  AR +FDM+   + ++W A+I GY MHG G EA+++F+ M+ 
Sbjct: 384 VAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKE 443

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
              +P+ +TFV VLSAC++ G + EG + F SM+Q+YG+ P +EH+ CMV L GR+G L+
Sbjct: 444 TKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLD 503

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           +A KF++D+  E P+  +W A+LGAC +H + +LG   A+ +L +EP +   +V+LSNIY
Sbjct: 504 QAVKFIEDIPFE-PSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIY 562

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A A R   V  VR  M +KG+KK  G S +E     + F++ D SH +   I   L+ L 
Sbjct: 563 ARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLN 622

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            + R+AGY P+  + + ++E++E+E  L  HSE+LALAFGL+R   G  IRI+KNLR+CV
Sbjct: 623 MKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICV 682

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHS IK IS    R+IIVRD  RFHHF+ GSCSC DYW
Sbjct: 683 DCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 215/408 (52%), Gaps = 12/408 (2%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH  ++  GYG +  + T L+     +G ++ A+ +F  I S D   +  +I   ++ + 
Sbjct: 68  VHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDC 127

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
            +++L F+ +M V+   P+N+TF+ V+K+C  L   + G+ VHC V  + Y+ DL+V   
Sbjct: 128 FSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVG 187

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L+  Y +  + D A + F  MP   V+ W+ MIS + Q+G +++A+ +F  MR   V P+
Sbjct: 188 LLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPN 247

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T   VL A A +  +DL + +H   +  GL  +V ++ +L+  YA+CG + ++ E+F+
Sbjct: 248 QFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFE 307

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            +S+ N ++W  +I  Y   G G  A+ LF  M  + V+   VT+ ++L ACA    ++ 
Sbjct: 308 ALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALEL 367

Query: 327 GHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           G +V   + +  YG    V +   ++D++ + G + +A +F+ D++  +   + W A++ 
Sbjct: 368 GLQVHCLTAKTIYGQDVAVGN--ALIDMYAKCGSIKDA-RFMFDMLDLRDKVS-WNAIIC 423

Query: 386 ACKMHKNFDLGVEVAE--HLLSVEPENPGHYVMLSNIYALA--GRMDR 429
              MH    LGVE  +  +L+      P     +  + A +  GR+D 
Sbjct: 424 GYSMH---GLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDE 468



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 135/258 (52%)

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  ++  F TLI   +++N   ++   + R+       + + F+ V+K    +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
             LGR VH  V   GY S+  +  AL++ Y+ S  V +AR+VFD +  K +V+W  MI+ 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y +N    EA+  F+ MR  G  P++ T   VL AC  L + D G+ VH  ++    + +
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +   L+ +Y RCG+   A   F  M + +VI W+ MIS +   G   +A+E+F +MR 
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 302 HGVRPNNVTFVAVLSACA 319
             V PN  TF +VL A A
Sbjct: 242 AFVIPNQFTFSSVLQASA 259



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 13/227 (5%)

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG--VNPDSTTCVCVLAACAQL 220
           VFD MP+++ V++ ++I GY Q+    EA  LF  +   G  +NP   T V  L    + 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
            +  LGR VH  ++  G   N  + T+LI+ Y+  G VS ARE+FD +S  ++++WT MI
Sbjct: 62  AE--LGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMI 119

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ---E 337
           + Y  +   +EA+E F +MR  G +PNN TF  VL AC        G  V  S+ +   E
Sbjct: 120 ASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYE 179

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
             L  GV     +++L+ R G  ++A++   D+      P  W+ M+
Sbjct: 180 RDLYVGVG----LLELYTRCGDNDDAWRAFGDMPKNDVIP--WSFMI 220


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/566 (40%), Positives = 337/566 (59%), Gaps = 10/566 (1%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF---ITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+Q+HA L+     R+  +    LS +  +     I Y+ R+F    +P     NT+I  
Sbjct: 27  LRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRLNPTLSHCNTMIRA 86

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSN-YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
            S +    +    +R +  ++  P+N  + S  +K C     L  G  +H  +F  G+ S
Sbjct: 87  FSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFLS 146

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D  +   L++ Y+   N   A KVFD +P +  V+WN + S Y +N   ++ + LF+ M+
Sbjct: 147 DSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMK 206

Query: 200 ---DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
              D  V PD  TC+  L ACA LG +D G+ VH+FI   GL   + L+ +L++MY+RCG
Sbjct: 207 NDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCG 266

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
           ++ KA ++F  M E NV++WTA+ISG  M+G+G EA+E F+ M   G+ P   T   +LS
Sbjct: 267 SMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLS 326

Query: 317 ACAHAGLVQEGHRVFASMRQ-EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
           AC+H+GLV EG   F  MR  E+ + P + H+ C+VDL GRA LL++AY  +K  +  KP
Sbjct: 327 ACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKS-MEMKP 385

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
              +W  +LGAC++H + +LG  V  HL+ ++ E  G YV+L N Y+  G+ ++V  +R+
Sbjct: 386 DSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRS 445

Query: 436 IMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESES 495
           +M +K +    G S +E+    + F + D SHP   EIY+ L E+  + + AGYV E  S
Sbjct: 446 LMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITS 505

Query: 496 AMHELE-EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
            +H LE EEE+ Y+LRYHSEKLA+AFG++ T PG TIR+ KNLR CVDCH+  KF+S   
Sbjct: 506 ELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVY 565

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
           +R +IVRDR RFHHFK GSCSC D+W
Sbjct: 566 DRIVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/565 (39%), Positives = 334/565 (59%), Gaps = 29/565 (5%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T ++ +    G +  A+ IF  +   +   ++ +I           +L  +R M+ S + 
Sbjct: 298 TAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGML 357

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   T ++++ +C +   L   R VH    V G   +L V   LV+FY+    +D A  +
Sbjct: 358 PDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGL 417

Query: 164 FDRMPDKSVVAWNSMISGYEQ----------------------------NGFAKEAIGLF 195
           FD M  +  V+W+ M+ G+ +                             G A E++ LF
Sbjct: 418 FDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLF 477

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
           + MR+ GV PD    V V+ ACA+LG +   R + ++I  +   ++V+L T++I+M+A+C
Sbjct: 478 DKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKC 537

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G V  AREIFD M E NVI+W+AMI+ YG HG G +A++LF  M   G+ PN +T V++L
Sbjct: 538 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLL 597

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
            AC+HAGLV+EG R F+ M ++Y +   V+H+ C+VDL GRAG L+EA K ++ +  EK 
Sbjct: 598 YACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKD 657

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
              +W A LGAC+ HK+  L  + A  LL ++P+NPGHY++LSNIYA AGR + V   R+
Sbjct: 658 -EGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRD 716

Query: 436 IMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESES 495
           +M Q+ LKK  G++ +EVD K++ FS+GD +HP + EIY+ L  L  +    GYVP++  
Sbjct: 717 LMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNF 776

Query: 496 AMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
            +H+++EE +   L  HSEKLA+AFGL+ T     IRI+KNLR+C DCH+  K +S  T 
Sbjct: 777 VLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITG 836

Query: 556 REIIVRDRLRFHHFKRGSCSCLDYW 580
           R IIVRD  RFHHFK G+CSC DYW
Sbjct: 837 RVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 194/397 (48%), Gaps = 35/397 (8%)

Query: 1   MKNKQPHSPAYEAILKAGPR-----------LKPLQQVHAHLIVAGYGRSRSMLTKLLSL 49
           + N++  S  +  + +  P+           L  ++QVHA   V G   +  +  KL+  
Sbjct: 63  LHNREEESSKFHFLQRLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYF 122

Query: 50  VCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTF 109
                 +  A  +F  +   DS  ++ ++   +K     +    +R +I     P NYT 
Sbjct: 123 YSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTL 182

Query: 110 SAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD 169
             VI++C  L                      ++Q ALV+ Y K   ++ AR +FD+M +
Sbjct: 183 PFVIRACRDLK---------------------NLQMALVDMYVKCREIEDARFLFDKMQE 221

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           + +V W  MI GY + G A E++ LF  MR+ GV PD    V V+ ACA+LG +   R +
Sbjct: 222 RDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARII 281

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
            ++I  +   ++V+L T++I+MYA+CG V  AREIFD M E NVI+W+AMI+ YG HG G
Sbjct: 282 DDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQG 341

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
            +A++LF  M + G+ P+ +T  ++L AC +   + +  +V A     +G+L  +     
Sbjct: 342 RKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQA-SVHGMLQNLIVANK 400

Query: 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           +V  +     L++AY     +         W+ M+G 
Sbjct: 401 LVHFYSYYRALDDAYGLFDGMCVRDSVS--WSVMVGG 435



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 172/363 (47%), Gaps = 31/363 (8%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           I  A+ +F  +   D   +  +I   ++   + +SL+ + +M    + P       V+ +
Sbjct: 209 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 268

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           CA L  ++  R +  ++    +  D+ +  A+++ YAK   V+ AR++FDRM +K+V++W
Sbjct: 269 CAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISW 328

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           ++MI+ Y  +G  ++A+ LF +M   G+ PD  T   +L AC    ++   R VH     
Sbjct: 329 SAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASV 388

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG-----MHGYGT 290
            G+  N+++A  L++ Y+    +  A  +FD M   + ++W+ M+ G+      M+ +GT
Sbjct: 389 HGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGT 448

Query: 291 -----------------------EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG 327
                                  E++ LF +MR  GV P+ V  V V+ ACA  G + + 
Sbjct: 449 FRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA 508

Query: 328 HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
            R      Q       V     M+D+  + G + E+ + + D + EK   + W+AM+ A 
Sbjct: 509 -RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCV-ESAREIFDRMEEKNVIS-WSAMIAAY 565

Query: 388 KMH 390
             H
Sbjct: 566 GYH 568


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/565 (40%), Positives = 340/565 (60%), Gaps = 10/565 (1%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           R+K  + VH  +I          L   L+ L  D G +    ++F  I       +NTLI
Sbjct: 317 RVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLI 376

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
              ++     ++LL + +M    + P +Y+ ++ + +C  +S   LG  +H ++  +G  
Sbjct: 377 SIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNF 436

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
           +D  VQ AL++ YAK   V  A K+F+++ +KS+V WNSMI G+ QNG++ EAI LF+ M
Sbjct: 437 NDF-VQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQM 495

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
               V  D  T + V+ AC+ LG ++ G+WVH  ++  GL  +  L T+L +MY++CG +
Sbjct: 496 YMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGEL 555

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
             A  +FD MSE ++++W+ MI+GYGMHG     + LF++M   G++PN++TF+ +LSAC
Sbjct: 556 QMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSAC 615

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           +HAG V+EG   F SM  E+G+ P  +H  CMVDL  RAG LN AY+    +I   P PA
Sbjct: 616 SHAGAVEEGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQ----IITSLPFPA 670

Query: 379 ---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
              +W A+L  C++HK  D+   + ++LL V+  + G+Y +LSNIYA  G  D+   VR+
Sbjct: 671 NSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRS 730

Query: 436 IMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESES 495
           +M  KGL+K  GYST+E+D+K Y F  GD SH  T +IY++L+          Y  E ++
Sbjct: 731 MMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDN 790

Query: 496 AMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
           ++    +  +E ++  HSEKLA+AFG++ T PG T+RI KNLR+C DCHS  K  S  T 
Sbjct: 791 SIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITG 850

Query: 556 REIIVRDRLRFHHFKRGSCSCLDYW 580
           REII+RD  RFH F+ GSCSC DYW
Sbjct: 851 REIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 193/367 (52%), Gaps = 13/367 (3%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           L Q+HAHL + G  R     TKL+      G    ++R+F   P PDSF++  LI     
Sbjct: 17  LTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVW 76

Query: 84  ANFSTDSLLFYRRMIVSNISP-SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
             F  +++  Y  M+  + +  SN+ F +V+K+C+    L++G  VH  V   G++SD  
Sbjct: 77  GGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAV 136

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           V+ +L+  Y + + +D A K FD MP + VVAW+S++  + QNG A E + +F+ M    
Sbjct: 137 VETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEA 196

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           V PDS T + V  AC++LG + LGR VH ++V + ++ N  L  SLI MY + G++  A 
Sbjct: 197 VEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAE 256

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
            +F+ +       WT MIS Y   G   EA+ +F +M+   + PN VT V VL ACA  G
Sbjct: 257 RLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLG 316

Query: 323 LVQEGHRVFA-----SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
            V+EG  V       +M  E   L        +++L+   G L + +K V + I EK   
Sbjct: 317 RVKEGRSVHGFVIRRAMDPELDFLGPA-----LMELYADTGNLRDCHK-VFETIKEKTIL 370

Query: 378 AVWTAML 384
           + W  ++
Sbjct: 371 S-WNTLI 376


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/657 (35%), Positives = 366/657 (55%), Gaps = 80/657 (12%)

Query: 3   NKQPHSPAYEAILKA----GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLS--LVCDAG-- 54
           N +P +  + ++L A      + K  QQ+H  ++ +G G   S+L  L+S  + C A   
Sbjct: 142 NFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPS 201

Query: 55  -----FITYAQRIFFCIPSPDSFLFNTLIIRNSKAN------------------------ 85
                 +  A+++F  +P+ D   + T+I    K N                        
Sbjct: 202 AQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMI 261

Query: 86  -------FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS--- 135
                     ++   +R+MI+S I    +TF++VI  CA+     LG+ +H +   +   
Sbjct: 262 SGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVAN 321

Query: 136 -GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY------------ 182
              D  + V  AL+ FY K   VD+A+++F++MP++ +V+WN ++SGY            
Sbjct: 322 PAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSF 381

Query: 183 -----EQN--------------GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
                E+N              GFA+EA+  FN M+  G  P        + +C+ LG +
Sbjct: 382 FNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSL 441

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
             GR +H  +V  G + ++    +LI MYARCG V  A  +F  M  ++ I+W AMI+  
Sbjct: 442 KHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAAL 501

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
           G HG GT+A+ELF  M   G+ P+ ++F+ V+SAC+HAGLV+EG + F SM   YG+ P 
Sbjct: 502 GQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPD 561

Query: 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
            EH+  ++DL  RAG  +EA + ++ +  E  AP +W A+L  C++H N DLG+E AE L
Sbjct: 562 EEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAP-IWEALLAGCRIHGNIDLGIEAAERL 620

Query: 404 LSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMG 463
             ++P++ G YV+LSN+YA+AG+ + +  VR +M  +G+KK  G S +EV+ K + F +G
Sbjct: 621 FELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVG 680

Query: 464 DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLM 523
           D +HP   +IY YL++L+   R+ GYVP+++  +H++E + +E+ L  HSEKLA+A+G M
Sbjct: 681 DANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFM 740

Query: 524 RTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +   G T+R+ KNLR+C DCH+A KF+S    REI+VRD  RFHHF+ G CSC DYW
Sbjct: 741 KLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 200/493 (40%), Gaps = 120/493 (24%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI------ 78
           + VHAH+I +G+     +L +L+ +   +  + YA+ +F  IP PD     TLI      
Sbjct: 33  RPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAA 92

Query: 79  --IRNSKANFSTDSL-----LFYRRMIVS--------------------NISPSNYTFSA 111
             ++ S+  FS   L     +FY  MI +                    N  P NYTF++
Sbjct: 93  GDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTS 152

Query: 112 VIKSCAHLSILNL-GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV---------AR 161
           V+ + A ++      + +HC V  SG      V  AL++ Y K               AR
Sbjct: 153 VLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEAR 212

Query: 162 KVFDRMPDKSV-------------------------------VAWNSMISGYEQNGFAKE 190
           K+FD MP++                                 VAWN+MISGY   G   E
Sbjct: 213 KLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLE 272

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF----IVGQGLDVNVVLAT 246
           A  +F  M    +  D  T   V++ CA  G   LG+ +H +    +     DV + +  
Sbjct: 273 AFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNN 332

Query: 247 SLINMYARCGNVSKAREIFDMMSEL-------------------------------NVIA 275
           +LI  Y +CG V  A+EIF+ M E                                N+++
Sbjct: 333 ALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILS 392

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           W  MISG    G+  EA++ F+RM+  G  P +  F   + +C+  G ++ G ++ A + 
Sbjct: 393 WIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVV 452

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV----WTAMLGACKMHK 391
           + YG    +     ++ ++ R G+++ A+    ++      P V    W AM+ A   H 
Sbjct: 453 R-YGYESSLSAGNALITMYARCGVVDAAHCLFINM------PCVDAISWNAMIAALGQHG 505

Query: 392 NFDLGVEVAEHLL 404
                +E+ E +L
Sbjct: 506 QGTQAIELFEEML 518



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 118/284 (41%), Gaps = 74/284 (26%)

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA-------- 174
           +L R VH H+  SG+    H+   L++ Y+KS+ ++ AR +FD +P   +VA        
Sbjct: 30  SLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAY 89

Query: 175 -------------------------WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
                                    +N+MI+ Y  N     AI LF  M+     PD+ T
Sbjct: 90  SAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYT 149

Query: 210 CVCVLAACAQLGDIDL-GRWVHEFIVGQGLDVNVVLATSLINMYARCGN---------VS 259
              VL A A + + +   + +H  +V  G      +  +LI+ Y +C           ++
Sbjct: 150 FTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMA 209

Query: 260 KAREIFDMMSELNVIAWT-------------------------------AMISGYGMHGY 288
           +AR++FD M   + ++WT                               AMISGY   G 
Sbjct: 210 EARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGL 269

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
             EA E+F +M    ++ +  TF +V+S CA+AG  + G  + A
Sbjct: 270 YLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHA 313


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/561 (37%), Positives = 340/561 (60%), Gaps = 6/561 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH   + +G     S+   L+++    G   +A+ +F  +   D   +N++I   +++
Sbjct: 306 KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 365

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVI-----KSCAHLSILNLGRAVHCHVFVSGYDS 139
           +   +S+  +  ++   + P ++T +++      K+C  L +L+ G+ +H H   +G+DS
Sbjct: 366 SLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDS 425

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           DLHV + +++ Y K  ++  A  VF+ +     VAW SMISG   NG   +A+ +++ MR
Sbjct: 426 DLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMR 485

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
              V PD  T   ++ A + +  ++ GR +H  ++      +  + TSL++MYA+CGN+ 
Sbjct: 486 QSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIE 545

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            A  +F  M+  N+  W AM+ G   HG   EAV LF  M++HG+ P+ V+F+ +LSAC+
Sbjct: 546 DAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 605

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           HAGL  E +    SM  +YG+ P +EH+ C+VD  GRAGL+ EA K + + +  K + ++
Sbjct: 606 HAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVI-ETMPFKASASI 664

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
             A+LGAC++  + + G  VA  L ++EP +   YV+LSNIYA A R D V   R +M +
Sbjct: 665 NRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKR 724

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           K +KK  G+S ++V    +LF + D+SHP  + IY  ++E+M   RE GYVP++E  + +
Sbjct: 725 KNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLD 784

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           +E+EE+E SL YHSEKLA+A+GL+ T    TIR++KNLR+C DCH+AIK+IS    REI+
Sbjct: 785 VEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIV 844

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           +RD  RFHHF+ G CSC DYW
Sbjct: 845 LRDANRFHHFRDGVCSCGDYW 865



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 188/385 (48%), Gaps = 15/385 (3%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
            HA ++V+G      +   LL++    G ++ A+++F   P  D   +N ++   + +  
Sbjct: 99  THARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVD 158

Query: 87  STDS-----LLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           S D      L  +R +  S  S +  T + V+K C +   L     VH +    G + D+
Sbjct: 159 SNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDV 218

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V  ALVN Y+K   +  AR +FD M ++ VV WN M+ GY Q G  KEA  LF+     
Sbjct: 219 FVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRS 278

Query: 202 GVNPDSTTCVCVLAACAQLG--DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
           G+ PD  +   +L  C   G  D++LG+ VH   V  GLD +V +A SL+NMY++ G   
Sbjct: 279 GLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAY 338

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL---- 315
            ARE+F+ M  L++I+W +MIS         E+V LF  +   G++P++ T  ++     
Sbjct: 339 FAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATA 398

Query: 316 -SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
             AC    L+ +G ++ A   +  G    +  +  ++D++ + G +  A   V + I   
Sbjct: 399 AKACGCLVLLDQGKQIHAHAIKA-GFDSDLHVNSGILDMYIKCGDMVNA-GIVFNYIS-A 455

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEV 399
           P    WT+M+  C  + N D  + +
Sbjct: 456 PDDVAWTSMISGCVDNGNEDQALRI 480



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 153/314 (48%), Gaps = 15/314 (4%)

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L LG+  H  + VSG   D  +   L+  Y+K  ++  AR+VFD  P++ +V WN+++  
Sbjct: 93  LLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGA 152

Query: 182 Y-----EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
           Y       +G A+E + LF L+R    +    T   VL  C   G +     VH + +  
Sbjct: 153 YAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKI 212

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
           GL+ +V ++ +L+N+Y++CG +  AR +FD M E +V+ W  M+ GY   G   EA +LF
Sbjct: 213 GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLF 272

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGL--VQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
                 G+RP+  +   +L+ C  AG   ++ G +V   +  + GL   V     +V+++
Sbjct: 273 SEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHG-IAVKSGLDSDVSVANSLVNMY 331

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
            + G    AY F ++V  +     +  W +M+ +C      +  V +   LL  E   P 
Sbjct: 332 SKMGC---AY-FAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLH-EGLKPD 386

Query: 413 HYVMLSNIYALAGR 426
           H+ + S   A A +
Sbjct: 387 HFTLASITLATAAK 400


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/540 (40%), Positives = 336/540 (62%), Gaps = 6/540 (1%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI- 102
           T LL +    G + YA+R+F  +P+ +   ++ LI      +  T + L ++ M+   + 
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 103 --SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
             SP+  + ++ +++CA L  L +G  +H  +  SG  +DL    +L++ YAK+  +D A
Sbjct: 337 FLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
             +FD M  K  V++++++SGY QNG A+EA  +F  M+   V PD+ T V ++ AC+ L
Sbjct: 395 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 454

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             +  GR  H  ++ +GL     +  +LI+MYA+CG +  +R++F+MM   ++++W  MI
Sbjct: 455 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 514

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GYG+HG G EA  LF  M   G  P+ VTF+ +LSAC+H+GLV EG   F  MR  YGL
Sbjct: 515 AGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGL 574

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P +EH++CMVDL  R G L+EAY+F++  +  +    VW A+LGAC+++KN DLG +V+
Sbjct: 575 TPRMEHYICMVDLLSRGGFLDEAYEFIQS-MPLRADVRVWVALLGACRVYKNIDLGKKVS 633

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
             +  + PE  G++V+LSNIY+ AGR D    VR I   +G KK  G S +E++   + F
Sbjct: 634 RMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAF 693

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
             GD+SHP + EIY+ LD ++   ++ GY P++   + +LEEEE+E +L  HSEKLA+A+
Sbjct: 694 VGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAY 753

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           G++  S   TI + KNLR+C DCH+ IK IS+   R IIVRD  RFHHFK G CSC D+W
Sbjct: 754 GILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 181/339 (53%), Gaps = 21/339 (6%)

Query: 53  AGFITYAQRIFFCIPSPDSFLFNTLI--IRNSKANFSTDSLLFYRRMIVSNISPSNYTFS 110
           +G ++ A  +F  IPSPD   +N LI    +S    + D L  YRRM+   ++P+NYTF 
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
             +K+C+ L+  + GRA+H H   +G  +DL V  AL++ Y K   +  A  +F  MP +
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 171 SVVAWNSMISGYEQNGFAKEAIG--LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
            +VAWN+M++GY  +G    A+   L   M+   + P+++T V +L   AQ G +  G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 229 VHEFIVGQGLDVN----------VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
           VH + +   L  N          V+L T+L++MYA+CG++  AR +FD M   N + W+A
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA-VLSACAHAGLVQEGHRVFASMRQE 337
           +I G+ +    T+A  LF  M A G+   + T +A  L ACA    ++ G ++ A + + 
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVI 371
            G+   +     ++ ++ +AGL+++A        VKD +
Sbjct: 370 -GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTV 407


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/592 (39%), Positives = 346/592 (58%), Gaps = 26/592 (4%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSML---TKLLSLVCDAGFITYAQRIFFCIP 67
           +  +L+    +  L+Q+HA  +   Y    + L    K+L L      + YA R+F  I 
Sbjct: 28  HATVLQTCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIE 87

Query: 68  SPDSFLFNTLIIRNSKANFS--TDSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNL 124
           +  SF++NTLI R    + S   ++ + YR+M+     SP  +TF  V+K+CA++   + 
Sbjct: 88  NHSSFMWNTLI-RACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSE 146

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G+ VHC +   G+  D++V   L++ Y     +D+ARKVFD MP++S+V+WNSMI    +
Sbjct: 147 GKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 206

Query: 185 NGFAKEAIGLFNLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDV-- 240
            G    A+ LF  M R F   PD  T   VL+ACA LG + LG W H F++ +  +DV  
Sbjct: 207 FGEYDSALQLFREMQRSF--EPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAM 264

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM- 299
           +V++  SLI MY +CG++  A ++F  M + ++ +W AMI G+  HG   EA+  F RM 
Sbjct: 265 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 324

Query: 300 -RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
            +   VRPN+VTFV +L AC H G V +G + F  M ++Y + P +EH+ C+VDL  RAG
Sbjct: 325 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAG 384

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGAC-KMHKNFDLGVEVAEHLLSVEPEN------- 410
            + EA   V   +  KP   +W ++L AC K   + +L  E+A +++  + +N       
Sbjct: 385 YITEAIDMVMS-MPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 443

Query: 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNT 470
            G YV+LS +YA A R + V +VR +M + G++K  G S++E++  ++ F  GD SHP T
Sbjct: 444 SGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQT 503

Query: 471 NEIYQYLDELMGRCREAGYVPESESA--MHELEEEEREYSLRYHSEKLALAFGLMRTSPG 528
            +IYQ L  +  R R  GY+P+   A  +    +  +EYSLR HSE+LA+AFGL+   P 
Sbjct: 504 KQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQ 563

Query: 529 MTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             IRI KNLR+C DCH   K IS   N EIIVRDR+RFHHFK GSCSCLDYW
Sbjct: 564 TPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/604 (38%), Positives = 351/604 (58%), Gaps = 55/604 (9%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS-PDSFLFNTLIIRNS 82
           L+++HAHL+V+G   S S     ++ +  +  ++YA+     +P  P + L +  ++R +
Sbjct: 33  LREIHAHLLVSGRLASPSHHADFVASLASSSHLSYAR---LLLPQRPATLLAHNGLLR-A 88

Query: 83  KANFSTDSLLF--YRRMIVSNISPSNYTFSAVIKSC-------------AHLSILNLGRA 127
            A      L F  +R +    ++P +Y+F+ ++++                +++  L  +
Sbjct: 89  LARGPCPGLAFAAFREL---PLAPDHYSFTFLVRAATSLAAAASATPVPTDVAVNLLAGS 145

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAK-------------------------------SNN 156
           VH   F  G+ +D HVQ+  V+ YA                                  +
Sbjct: 146 VHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGGD 205

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           VD AR++FD MP +  VAWN+M++GY + G ++EA+GLF+ M+  GV     T V VL A
Sbjct: 206 VDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTA 265

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           CAQ+G ++ G WVH ++  +G+ V+V L T+L++MY++CG V+ + E+F+ M E N+  W
Sbjct: 266 CAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTW 325

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           T+ +SG  M+G G E +ELF RM + G+ PN VTFVAVL  C+ AGLV+EG   F SM+ 
Sbjct: 326 TSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKD 385

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
           ++ + P +EH+ CMVDL+GRAG L++A  F+  +  E P   VW A+L A ++H N DLG
Sbjct: 386 KHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVE-PHEGVWGALLNASRIHNNVDLG 444

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQK 456
                 L  +E +N   +V+LSNIYA +     V  VRN+M  KG+KK  G S +EVD K
Sbjct: 445 KHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGK 504

Query: 457 NYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKL 516
            + F +G KSHP   +I   L E+  R R  GY   ++  + ++EEEE+E ++  HSEKL
Sbjct: 505 VHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLFDIEEEEKEGAISLHSEKL 564

Query: 517 ALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSC 576
           ALAFGL+       IRIVKNLR+C DCH   K IS   +REI++RDR RFHHFK G+CSC
Sbjct: 565 ALAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACSC 624

Query: 577 LDYW 580
            DYW
Sbjct: 625 RDYW 628


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/616 (37%), Positives = 347/616 (56%), Gaps = 41/616 (6%)

Query: 5   QPHSPAYEAIL---------KAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF 55
            PHS ++++ L         K     K +Q +H H I     +   +  +LL + C   +
Sbjct: 15  NPHSSSHDSNLRRVIISLLHKNRKNPKHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNY 74

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           I +A ++F C  +P+ +L+ +LI         TD++  + +M+  ++   NY  +A++K+
Sbjct: 75  IDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKA 134

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           C     L  G+ VH  V  SG   D  +   LV  Y K   ++ ARK+FD MP++ VVA 
Sbjct: 135 CVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVAC 194

Query: 176 NSMISGYEQNGFAKEAIGLFNLM--RDF-----------------------------GVN 204
             MI      G  +EAI +FN M  RD                              GV 
Sbjct: 195 TVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVE 254

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T VCVL+ACAQLG ++LGRW+H ++   G++VN  +A +LINMY+RCG++ +A+ +
Sbjct: 255 PNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQAL 314

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD +   +V  + +MI G  +HG   EAVELF  M    VRPN +TFV VL+AC+H GLV
Sbjct: 315 FDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLV 374

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
             G  +F SM   +G+ P VEH+ CMVD+ GR G L EA+ F+   +G +    +  ++L
Sbjct: 375 DLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGR-MGVEADDKMLCSLL 433

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            ACK+HKN  +G +VA+ L      + G ++MLSN YA  GR      VR  M + G+ K
Sbjct: 434 SACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIK 493

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S++EV+   + F  GD  HP    IY+ L+EL    +  GY+P +E A+H++++E+
Sbjct: 494 EPGCSSIEVNNAIHEFFSGDLRHPERKRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQ 553

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E +L  HSE+LA+ +GL+ T    T+R+ KNLR+C DCH+ IK I+  T R+I+VRDR 
Sbjct: 554 KELALAVHSERLAICYGLVSTEAYTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRN 613

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF+ G CSC DYW
Sbjct: 614 RFHHFENGECSCKDYW 629


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/551 (38%), Positives = 335/551 (60%), Gaps = 15/551 (2%)

Query: 30  HLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTD 89
           ++++ GY RS   +T              A+++F  +P  +   +N ++    +  F+ +
Sbjct: 122 NILINGYFRSGDWVT--------------ARKMFDEMPERNVATWNAMVAGLIQFEFNEE 167

Query: 90  SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
            L  + RM      P  +   +V++ CA L  L  GR VH +V   G++ +L V ++L +
Sbjct: 168 GLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAH 227

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            Y K  ++    ++   MP ++VVAWN++I+G  QNG+ +E +  +N+M+  G  PD  T
Sbjct: 228 MYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKIT 287

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
            V V+++C++L  +  G+ +H  ++  G  + V + +SLI+MY+RCG +  + ++F    
Sbjct: 288 FVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECE 347

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             +V+ W++MI+ YG HG G EA++LF++M    +  N+VTF+++L AC+H GL ++G +
Sbjct: 348 NGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIK 407

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
            F  M ++YG+ P +EH+ CMVDL GR G + EA   ++  +  K     W  +L ACK+
Sbjct: 408 FFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRS-MPVKADVITWKTLLSACKI 466

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           HK  ++   ++E +  ++P +P  YV+LSNI+A   R D V  VR  M  + LKK  G S
Sbjct: 467 HKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGIS 526

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
            +EV  + + F MGDKSHP + EI  YL EL    ++ GYVP+ +S +H+++ E++EYSL
Sbjct: 527 WLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSL 586

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
            +HSEKLA+AF L+ T  G  IR++KNLR+C DCH AIK+IS  +NREIIVRD  RFHHF
Sbjct: 587 VHHSEKLAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHF 646

Query: 570 KRGSCSCLDYW 580
           K G CSC DYW
Sbjct: 647 KNGRCSCGDYW 657



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 188/391 (48%), Gaps = 42/391 (10%)

Query: 100 SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV 159
           S+I      FS +++SC   + L+LG+ +H  +  SG  SD  +   L+N Y+K   +D 
Sbjct: 46  SHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDT 105

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNG-------------------------------FA 188
           A  +F  MP K++++ N +I+GY ++G                               F 
Sbjct: 106 AITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFN 165

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
           +E +GLF+ M + G  PD      VL  CA L  +  GR VH ++   G + N+V+ +SL
Sbjct: 166 EEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSL 225

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
            +MY +CG++ +   +   M   NV+AW  +I+G   +GY  E ++ ++ M+  G RP+ 
Sbjct: 226 AHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDK 285

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           +TFV+V+S+C+    + +G ++ A + +    L  V     ++ ++ R G L  + K   
Sbjct: 286 ITFVSVISSCSELATLGQGQQIHAEVIKAGASLI-VSVISSLISMYSRCGCLEYSLKVFL 344

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSNIYALA-- 424
           +   E      W++M+ A   H     GVE  +    +E E         LS +YA +  
Sbjct: 345 EC--ENGDVVCWSSMIAAYGFHGR---GVEAIDLFNQMEQEKLEANDVTFLSLLYACSHC 399

Query: 425 GRMDRVEVVRNIMIQK-GLKKHVGYSTVEVD 454
           G  ++     ++M++K G+K  + + T  VD
Sbjct: 400 GLKEKGIKFFDLMVEKYGVKPRLEHYTCMVD 430



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 142/286 (49%), Gaps = 5/286 (1%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P   A  ++L+    L+ L   +QVH ++   G+  +  +++ L  +    G +   +R+
Sbjct: 182 PDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERL 241

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
              +PS +   +NTLI   ++  +  + L  Y  M ++   P   TF +VI SC+ L+ L
Sbjct: 242 IRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATL 301

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+ +H  V  +G    + V ++L++ Y++   ++ + KVF    +  VV W+SMI+ Y
Sbjct: 302 GQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAY 361

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVN 241
             +G   EAI LFN M    +  +  T + +L AC+  G  + G    + +V + G+   
Sbjct: 362 GFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPR 421

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
           +   T ++++  R G+V +A  +   M  + +VI W  ++S   +H
Sbjct: 422 LEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIH 467


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/576 (36%), Positives = 342/576 (59%), Gaps = 2/576 (0%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P    + ++ K+       +Q+H H    G+         L+++  + G +  A+++F  
Sbjct: 86  PDRYTFPSLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDK 145

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCAHLSILNL 124
           +       + T+I  +++ +   +++  + RM+ S N+ P+  T   V+ +CA    L +
Sbjct: 146 MEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAM 205

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
            + +H ++   G+   + +   L++ Y K   V +AR +FD+  +K++ +WN MI+G+ +
Sbjct: 206 VKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVE 265

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           +   +EA+ LF  M+  G+  D  T   +L AC  LG ++LG+W+H +I  Q +DV+V L
Sbjct: 266 DSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVAL 325

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
            T+L++MYA+CG++  A ++F  M E +V+ WTA+I G  M G    A++ F  M   GV
Sbjct: 326 GTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGV 385

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
           +P+ +TFV VL+AC+HAG V EG   F SM   YG+ P +EH+  +VD+ GRAG + EA 
Sbjct: 386 KPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAE 445

Query: 365 KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
           + +K  +   P   V   +LGAC++H N +     A+ LL ++P + G YV+LSNIY  +
Sbjct: 446 ELIKS-MPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSS 504

Query: 425 GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRC 484
            + +  +  R +M ++G++K  G S +EV    + F  GD SH  ++EI + L++++ + 
Sbjct: 505 KKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKL 564

Query: 485 REAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
           + AGYVP+    + ++ EEE+E  L  HSEKLA+AFGL+ TS G  IR+VKNLR+C DCH
Sbjct: 565 KNAGYVPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCH 624

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           SA K IS   NREIIVRDR RFHHFK G+CSC  +W
Sbjct: 625 SATKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 206/369 (55%), Gaps = 13/369 (3%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPDSFLFNTLI 78
           +  L+Q+HA ++  G        +K+++     ++G + YA+ +F  IP+P S+  N++I
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
              +  N   ++LLFY+ M+V  + P  YTF ++ KSC + S    G+ +HCH    G+ 
Sbjct: 61  RGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSS---EGKQIHCHSTKLGFA 117

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN-L 197
           SD + Q  L+N Y+    +  ARKVFD+M DK+VV+W +MI  + Q     EA+ LF+ +
Sbjct: 118 SDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRM 177

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M+   V P+  T V VL ACA+  D+ + + +HE+I   G   +VVL T L+++Y +CG 
Sbjct: 178 MKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGC 237

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           V  AR++FD   E N+ +W  MI+G+       EA+ LF  M+  G++ + VT  ++L A
Sbjct: 238 VQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLA 297

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           C H G ++ G  + A ++++  +   V     +VD++ + G +  A +    V  E P  
Sbjct: 298 CTHLGALELGKWLHAYIKKQR-IDVDVALGTALVDMYAKCGSIETAIQ----VFHEMPEK 352

Query: 378 AV--WTAML 384
            V  WTA++
Sbjct: 353 DVMTWTALI 361


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/586 (38%), Positives = 348/586 (59%), Gaps = 10/586 (1%)

Query: 1    MKNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
            M+   P+   Y +IL+    L  L   +Q+H H+I  G+  +  + + L+ +    G + 
Sbjct: 456  MEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLA 515

Query: 58   YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
             A RI   +P  D   +  +I    + +  +++L  +  M    I   N  F++ I +CA
Sbjct: 516  LALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACA 575

Query: 118  HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
             +  L  G+ +H   + +G+ +DL +  AL++ YA+   +  A   F+++ DK+ ++WNS
Sbjct: 576  GIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNS 635

Query: 178  MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
            ++SG  Q+G+ +EA+ +F  M       +  T    ++A A L +I  G+ +H  ++  G
Sbjct: 636  LVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTG 695

Query: 238  LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
             D    ++ SLI++YA+ G++S A   F+ MSE NVI+W AMI+GY  HG G EA+ LF 
Sbjct: 696  YDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFE 755

Query: 298  RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
             M+  G+ PN+VTFV VLSAC+H GLV+EG   F SM + + L+P  EH+VC+VDL GRA
Sbjct: 756  EMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRA 815

Query: 358  GLLNEAYKFVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            G L+ A +++K    E P PA   +W  +L AC +HKN ++G   A HLL +EPE+   Y
Sbjct: 816  GQLDRAMEYIK----EMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATY 871

Query: 415  VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIY 474
            V++SNIYA++ +    +  R +M  +G+KK  G S +EV    + F  GDK HP TN+IY
Sbjct: 872  VLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIY 931

Query: 475  QYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIV 534
            +Y+  L  R  E GYV +S S ++E E+ +++     HSEKLA+AFGL+     + IR++
Sbjct: 932  EYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVM 991

Query: 535  KNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCH+ IK++S  +NR IIVRD  RFHHF  G CSC D+W
Sbjct: 992  KNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 209/409 (51%), Gaps = 10/409 (2%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P      ++L A  +++  +   Q+H  +I  G+     +   L++L   +  +  A+RI
Sbjct: 259 PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERI 318

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  + S D   +N+LI    +  FS  +L  + +M    + P   T ++++ +CA +  L
Sbjct: 319 FSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGAL 378

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           + G  +H H   +G  +D+ ++ +L++ Y+K  +V+ A K F     +++V WN M+  Y
Sbjct: 379 HKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAY 438

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q     ++  +F  M+  G+ P+  T   +L  C  LG + LG  +H  ++  G  +NV
Sbjct: 439 GQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNV 498

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            + + LI+MYA+ G ++ A  I   + E +V++WTAMI+GY  H   +EA++LF  M   
Sbjct: 499 YVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYR 558

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV--CMVDLFGRAGLL 360
           G++ +N+ F + +SACA    +++G ++ A   Q Y    G +  +   ++ L+ R G +
Sbjct: 559 GIQFDNIGFASAISACAGIRALRQGQQIHA---QSYAAGFGADLSINNALISLYARCGRI 615

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
            EAY    + IG+K   + W +++        F+  ++V   +L  E E
Sbjct: 616 QEAY-LAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 201/406 (49%), Gaps = 15/406 (3%)

Query: 6   PHSPAYEAILKA----GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           P+   +  +LKA          ++QVH+     G+  S  +   L+ L    G+I  A++
Sbjct: 157 PNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKK 216

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F CI   D   +  +I   S+     +++L +  M  S I P+ Y  S+V+ +   + +
Sbjct: 217 VFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQL 276

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
             LG  +HC V   G+ S+ +V   LV  Y++S  +  A ++F  M  +  V++NS+ISG
Sbjct: 277 FELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISG 336

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             Q GF+  A+ LF  M+   + PD  T   +L+ACA +G +  G  +H   +  G+  +
Sbjct: 337 LVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSAD 396

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           ++L  SL+++Y++C +V  A + F      N++ W  M+  YG     +++ E+F +M+ 
Sbjct: 397 IILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQM 456

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGL 359
            G+ PN  T+ ++L  C   G +  G ++   + +  G    V  +VC  ++D++ + G 
Sbjct: 457 EGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT-GFQLNV--YVCSVLIDMYAKYGQ 513

Query: 360 LNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHL 403
           L  A + ++ +    P   V  WTAM+     H  F   +++ E +
Sbjct: 514 LALALRILRRL----PEDDVVSWTAMIAGYVQHDMFSEALQLFEEM 555



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/473 (24%), Positives = 224/473 (47%), Gaps = 40/473 (8%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P      ++L A   +  L    Q+H+H I AG      +   LL L      +  A +
Sbjct: 359 KPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHK 418

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            F    + +  L+N +++   + +  +DS   +R+M +  + P+ +T+ +++++C  L  
Sbjct: 419 FFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGA 478

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L LG  +H HV  +G+  +++V + L++ YAK   + +A ++  R+P+  VV+W +MI+G
Sbjct: 479 LYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAG 538

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q+    EA+ LF  M   G+  D+      ++ACA +  +  G+ +H      G   +
Sbjct: 539 YVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGAD 598

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +  +LI++YARCG + +A   F+ + + N I+W +++SG    GY  EA+++F RM  
Sbjct: 599 LSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLR 658

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
                N  T+ + +SA A    +++G ++  SM  + G     E    ++ L+ ++G ++
Sbjct: 659 TEAEVNMFTYGSAISAAASLANIKQGQQIH-SMVLKTGYDSEREVSNSLISLYAKSGSIS 717

Query: 362 EAYKFVKD---------------------------------VIGEKPAPAVWTAMLGACK 388
           +A++   D                                 V G  P    +  +L AC 
Sbjct: 718 DAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACS 777

Query: 389 MHKNFDLGVEVAEHLLSVEPENPG--HYVMLSNIYALAGRMDR-VEVVRNIMI 438
                  G++  E +  +    P   HYV + ++   AG++DR +E ++ + I
Sbjct: 778 HIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPI 830



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 215/462 (46%), Gaps = 22/462 (4%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           N Q +    E  L +G   + ++ +H  +  +G+     ++  L+      G    A ++
Sbjct: 57  NYQNYLWLLEGCLTSGSLFETMR-LHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKV 115

Query: 63  FFCIPSPDSFLFNTLI--IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           F    +   F +N +I      K+NF       +RRM+   I+P+ YTF+ V+K+C    
Sbjct: 116 FDENSNRSVFSWNKMIHVFVAQKSNFQV--FCLFRRMLAEGITPNGYTFAGVLKACVGGD 173

Query: 121 I-LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
           I  N  + VH   F  G+DS   V   L++ Y+K+  ++ A+KVF+ +  K +V W +MI
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           SG  QNG  +EAI LF  M    + P       VL+A  ++   +LG  +H  ++  G  
Sbjct: 234 SGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFH 293

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
               +   L+ +Y+R   +  A  IF  M+  + +++ ++ISG    G+   A+ELF +M
Sbjct: 294 SETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKM 353

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEG-----HRVFASMRQEYGLLPGVEHHVCMVDLF 354
           +   ++P+ +T  ++LSACA  G + +G     H + A M  +  +L G      ++DL+
Sbjct: 354 QRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADI-ILEG-----SLLDLY 407

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            +   +  A+KF   +  E     +W  ML A     N     E+    + +E   P  +
Sbjct: 408 SKCADVETAHKFF--LTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQ-MQMEGMIPNQF 464

Query: 415 VMLSNIYALA--GRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
              S +      G +   E +   +I+ G + +V   +V +D
Sbjct: 465 TYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLID 506



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 12/200 (6%)

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           I L N M + GV  +    + +L  C   G +     +H  I   G D   +L  SL++ 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           Y R G+   A ++FD  S  +V +W  MI  +       +   LF RM A G+ PN  TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF----- 366
             VL AC    +     +   S    YG          ++DL+ + G +  A K      
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 367 VKDVIGEKPAPAVWTAMLGA 386
           +KD++        W AM+  
Sbjct: 223 MKDIV-------TWVAMISG 235


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/578 (38%), Positives = 343/578 (59%), Gaps = 38/578 (6%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    Y  +LKA  R   L    Q+H  ++  G   +  +   L+++      +  AQ++
Sbjct: 118 PDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQV 177

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
              IP  D   +N+++   ++     D+L   R M   N+ P++ T ++++ +  + +  
Sbjct: 178 LDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTT-- 235

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
                                          S+NV   +++F ++  KSV++WN MI+ Y
Sbjct: 236 -------------------------------SDNVLYVKEMFLKLTKKSVISWNVMIAMY 264

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
             N   KEA+ L++ M   GV PD  + V VL A   L  + LGR VH+F   + L  N+
Sbjct: 265 VNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNL 324

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           +L  +LI+MYA+CG +  AR +F+ M   +V++WT++IS YG  G G +AV +F  MR  
Sbjct: 325 LLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNS 384

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+ P+++ FV+VL+AC+HAGL+ +G R + ++  E G+ P +EH  C+VDL GRAG ++E
Sbjct: 385 GLNPDSIAFVSVLAACSHAGLLDDG-RYYFNLMAECGITPKLEHFACVVDLLGRAGKIDE 443

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           AY F++ +  E P   VW  +L AC+++ N ++G+  A+ LL + PE+ G+YV+LSNIYA
Sbjct: 444 AYGFIRQMPLE-PDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYA 502

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            AGR   V  +R+IM +KG+KK  G S VE++   + F  GD SHP + +IY+ LD L+G
Sbjct: 503 KAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVG 562

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           + +E GY+PE++SA+H++EEE++EY L  HSEKLA+AF ++ T PG  IR+ KNLR+C D
Sbjct: 563 KMKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGD 622

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH A K IS    REII+RD  RFHHF+ G CSC DYW
Sbjct: 623 CHVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 173/381 (45%), Gaps = 51/381 (13%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGR-SRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
           IL   P +  L+++H  ++   Y R + S+  KL+ +    G    A+ IF  I   +  
Sbjct: 27  ILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVV 86

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
            FN +I      +   D+LL Y+ M      P  YT+  V+K+ +    L +G  +H  V
Sbjct: 87  FFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAV 146

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI 192
              G D +L+V   L+  Y K  ++  A++V D +P + VV+WNSM+S Y QNG   +A+
Sbjct: 147 LKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDAL 206

Query: 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252
            L   M    + P+  T   +L A                         V   TS     
Sbjct: 207 ELCREMEALNLKPNDCTMASLLPA-------------------------VTNTTS----- 236

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
               NV   +E+F  +++ +VI+W  MI+ Y  +    EAV L+ +M A+GV P+ V+ V
Sbjct: 237 ---DNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIV 293

Query: 313 AVLSACAHAGLVQEGHRV--FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF---- 366
           +VL A      +  G RV  FA  ++   LLP +     ++D++ + G L +A       
Sbjct: 294 SVLPAYGDLSALSLGRRVHKFAERKK---LLPNLLLENALIDMYAKCGCLRDARAVFNQM 350

Query: 367 -VKDVIGEKPAPAVWTAMLGA 386
             +DV+        WT+++ A
Sbjct: 351 QFRDVVS-------WTSIISA 364


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/566 (38%), Positives = 341/566 (60%), Gaps = 3/566 (0%)

Query: 17  AGPRLKPL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFN 75
           A  RL  L + VH   + A + R       LL +    G +  A+ +F  +       + 
Sbjct: 307 ADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYT 366

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
           ++I   ++   + +++  +  M    ISP  YT +AV+  CA   +L+ G+ VH  +  +
Sbjct: 367 SMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKEN 426

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
               D+ V  AL++ YAK  ++  A  VF  M  K +++WN++I GY +N +A EA+ LF
Sbjct: 427 DMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLF 486

Query: 196 NLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           NL+  +   +PD  T  CVL ACA L   D GR +H +I+  G   +  +A SL++MYA+
Sbjct: 487 NLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAK 546

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CG +  AR +FD ++  ++++WT MI+GYGMHG+G EA+ LF++MR  G+ P+ ++FV++
Sbjct: 547 CGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSL 606

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L AC+H+GLV EG R F  MR E  + P VEH+ C+VD+  R G L++AY+F+++ +   
Sbjct: 607 LYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIEN-MPIP 665

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P   +W A+L  C++H +  L   VAE +  +EPEN G+YV+++NIYA A + + V+ +R
Sbjct: 666 PDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLR 725

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
             + Q+GL+K+ G S +E+  +  +F  GD S+P T +I  +L  +  R  E GY P ++
Sbjct: 726 KRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTK 785

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
            A+ + EE E+E +L  HSEKLA+A G++ +  G  IR+ KNLR+C DCH   KF+S  T
Sbjct: 786 YALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLT 845

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
            REI++RD  RFH FK G CSC  +W
Sbjct: 846 RREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 198/372 (53%), Gaps = 15/372 (4%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  ++V   +   G+    ++ +KL  +  + G +  A R+F  +    +  +N L+  
Sbjct: 110 LKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNE 169

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            +K+   + S+  +++M+ S +   +YTFS V KS + L  +N G  +H ++  SG+   
Sbjct: 170 LAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGER 229

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
             V  +LV FY K++ VD ARKVFD M ++ V++WNS+I+GY  NG A++ + +F  M  
Sbjct: 230 NSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLF 289

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G+  D  T V V A CA    I LGR VH F V            +L++MY++CG++  
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDS 349

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A+ +F  MS  +V+++T+MI+GY   G   EAV+LF  M   G+ P+  T  AVL+ CA 
Sbjct: 350 AKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCAR 409

Query: 321 AGLVQEGHRVFASMRQ-EYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEK 374
             L+ EG RV   +++ + G    V +   ++D++ + G + EA        VKD+I   
Sbjct: 410 NRLLDEGKRVHEWIKENDMGFDIFVSN--ALMDMYAKCGSMREAELVFSEMRVKDIIS-- 465

Query: 375 PAPAVWTAMLGA 386
                W  ++G 
Sbjct: 466 -----WNTVIGG 472



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 177/387 (45%), Gaps = 44/387 (11%)

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
           +I P   T  +V++ CA    L  G+ V   +  +G+  D ++ + L   Y    ++  A
Sbjct: 91  DIDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEA 148

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
            +VFD++  +  + WN +++   ++G    +IGLF  M   GV  DS T  CV  + + L
Sbjct: 149 SRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSL 208

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             ++ G  +H +I+  G      +  SL+  Y +   V  AR++FD M+E +VI+W ++I
Sbjct: 209 RSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSII 268

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV---------- 330
           +GY  +G   + + +F +M   G+  +  T V+V + CA + L+  G  V          
Sbjct: 269 NGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFS 328

Query: 331 --------FASMRQEYGLLP------------GVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
                      M  + G L              V  +  M+  + R GL  EA K  +++
Sbjct: 329 REDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEM 388

Query: 371 IGEKPAPAVW--TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN----IYALA 424
             E  +P V+  TA+L  C  ++  D G  V E    ++  + G  + +SN    +YA  
Sbjct: 389 EEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEW---IKENDMGFDIFVSNALMDMYAKC 445

Query: 425 GRMDRVEVVRNIMIQKGLKKHVGYSTV 451
           G M   E+V + M  K +   + ++TV
Sbjct: 446 GSMREAELVFSEMRVKDI---ISWNTV 469



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 7/159 (4%)

Query: 161 RKVFDRMP-----DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
           R V DR       D+SV   N+ +  + ++G  K A+ L ++   + ++P   T   VL 
Sbjct: 45  RTVSDRADSITTFDRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDP--RTLCSVLQ 102

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
            CA    +  G+ V  FI G G  ++  L + L  MY  CG++ +A  +FD +     + 
Sbjct: 103 LCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALF 162

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           W  +++     G  + ++ LF +M + GV  ++ TF  V
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCV 201


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/545 (40%), Positives = 322/545 (59%), Gaps = 38/545 (6%)

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA--------------- 117
           L + LI  ++ +     +L  Y  +I + + P+ +T  +++KS A               
Sbjct: 55  LHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAV 114

Query: 118 HLSILNLGRA---------VHCHVFVSGYDSDLH--------VQAA----LVNFYAKSNN 156
           H   + LG A         +  H  + G  +D H        V A+    L+  +A++  
Sbjct: 115 HAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGR 174

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           V  AR +FD MP+++ V+W++M++GY Q G  +EA+G+F+ M+  GV PD T  V VLAA
Sbjct: 175 VADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAA 234

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           CAQLG ++ G+WVH ++    + + V L T+L++MYA+CG V    E+F+ M + NV+AW
Sbjct: 235 CAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAW 294

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           T MI G  MHG G++++ LF +M + GV+P+++ F+  L AC H GLV +G  +F SM  
Sbjct: 295 TTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVN 354

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
            YG+ P +EH+ CMVDL  R GLL+EA   V+  +  KP   +W A++  C+ HKN +L 
Sbjct: 355 NYGIKPKIEHYGCMVDLLARNGLLSEARDMVEK-MPMKPDALIWGALMAGCRFHKNVELA 413

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQK 456
             V +H + +EP+  G YV+L NIY+ +GR      +RN+M +KG++K  G S VE+   
Sbjct: 414 EYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGV 473

Query: 457 NYLFSMGDKSHPNTNEIYQYLDELMGRCR-EAGYVPESESAMHELEEEEREYSLRYHSEK 515
            + F +GD SHP   +I     E+  R R E GYVP+ +  + ++EEEE E +L  HSEK
Sbjct: 474 IHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRHSEK 533

Query: 516 LALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCS 575
           LA+AF L+ T   M IRIVKNLR+C DCH   K IS    REIIVRDR RFH FK G+CS
Sbjct: 534 LAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDGTCS 593

Query: 576 CLDYW 580
           C DYW
Sbjct: 594 CKDYW 598



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 125/248 (50%), Gaps = 2/248 (0%)

Query: 41  SMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS 100
           S    L++    AG +  A+ +F  +P  ++  ++ ++    +A    ++L  + +M   
Sbjct: 160 STFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQ 219

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
            + P +     V+ +CA L  L  G+ VH ++  +     + +  ALV+ YAK   V + 
Sbjct: 220 GVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLG 279

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
            +VF+ M DK+V+AW +MI G   +G   +++ LF+ M   GV PD    +  L AC   
Sbjct: 280 MEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHT 339

Query: 221 GDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTA 278
           G +D GR +   +V   G+   +     ++++ AR G +S+AR++ + M  + + + W A
Sbjct: 340 GLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGA 399

Query: 279 MISGYGMH 286
           +++G   H
Sbjct: 400 LMAGCRFH 407


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/605 (37%), Positives = 344/605 (56%), Gaps = 35/605 (5%)

Query: 10  AYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           ++  +LKA  R+K L    ++H      G+     + T L+ +    G I  A+ +F  +
Sbjct: 124 SFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKM 183

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
              D   ++ +I    ++    D+LL +  M   N+ P     S V+ +C     L+ G+
Sbjct: 184 FHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGK 243

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA-------------------------- 160
            +H  +  +    D H+Q+ALV  YA   ++D+A                          
Sbjct: 244 MIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLG 303

Query: 161 -----RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
                R VF++M  K +V W++MISGY ++   +EA+ LFN M+  G+ PD  T + V+ 
Sbjct: 304 QIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVIT 363

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           ACA LG +D  +W+H F+   G    + +  +LI MYA+CG++ +AR IFD M   NVI+
Sbjct: 364 ACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVIS 423

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           WT MIS + MHG    A+  FH+M    + PN +TFV VL AC+HAGLV+EG ++F SM 
Sbjct: 424 WTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMI 483

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
            E+ + P   H+ CMVDLFGRA LL EA + V + +   P   +W +++ AC++H   +L
Sbjct: 484 NEHNITPKHVHYGCMVDLFGRANLLREALELV-EAMPLAPNVIIWGSLMAACRVHGEIEL 542

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
           G   A+ LL ++P++ G +V LSNIYA A R + V  VR +M  KG+ K  G S  E++ 
Sbjct: 543 GEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNN 602

Query: 456 KNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEK 515
           + + F + D+SH + +EIY+ L E++ + +  GY P + S + +LEEEE++  + +HSEK
Sbjct: 603 EIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEK 662

Query: 516 LALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCS 575
           LAL +GLMR   G  IRI+KNLR+C DCH+ IK  S    REI+VRDR RFHH+K G CS
Sbjct: 663 LALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCS 722

Query: 576 CLDYW 580
           C DYW
Sbjct: 723 CKDYW 727



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 208/414 (50%), Gaps = 43/414 (10%)

Query: 15  LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCD-AGFITYAQRIFFCIPSPDSFL 73
           L +   L  L+QVHA ++ +   RS S+L KL+   C  +  + YA  +F  IP P++ L
Sbjct: 30  LSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHL 89

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
            N  +   S++     +LL Y RM    ++   ++F  ++K+ + +  L  G  +H    
Sbjct: 90  CNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAA 149

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
             G+DSD  VQ  LV  YA    +  AR +FD+M  + VV W+ MI GY Q+G   +A+ 
Sbjct: 150 KLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALL 209

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           LF  M+++ V PD      VL+AC + G++  G+ +H+FI+   + V+  L ++L+ MYA
Sbjct: 210 LFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYA 269

Query: 254 RCGN-------------------------------VSKAREIFDMMSELNVIAWTAMISG 282
            CG+                               +  AR +F+ M + +++ W+AMISG
Sbjct: 270 SCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISG 329

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV--FASMRQEYGL 340
           Y       EA+ LF+ M++ G++P+ VT ++V++ACAH G + +   +  F       G 
Sbjct: 330 YAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGA 389

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKN 392
           LP    +  +++++ + G L  A +    +  + P   V  WT M+ A  MH +
Sbjct: 390 LPI---NNALIEMYAKCGSLERARR----IFDKMPRKNVISWTCMISAFAMHGD 436



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 95/207 (45%), Gaps = 7/207 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P      +++ A   L  L Q   +H  +   G+G +  +   L+ +    G +  A+R
Sbjct: 352 KPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARR 411

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF  +P  +   +  +I   +    +  +L F+ +M   NI P+  TF  V+ +C+H  +
Sbjct: 412 IFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGL 471

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQ-AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMI 179
           +  GR +   +      +  HV    +V+ + ++N +  A ++ + MP   +V+ W S++
Sbjct: 472 VEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLM 531

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           +    +G  +  +G F   R   ++PD
Sbjct: 532 AACRVHG--EIELGEFAAKRLLELDPD 556


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/535 (39%), Positives = 328/535 (61%), Gaps = 1/535 (0%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LL +    G I  A+  F  IP  D  L + +I R +++N +  +   + R++ S++ P+
Sbjct: 285 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPN 344

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            Y+ S+V+++C ++  L+ G+ +H H    G++SDL V  AL++FYAK N++D + K+F 
Sbjct: 345 EYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFS 404

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            + D + V+WN+++ G+ Q+G  +EA+ +F  M+   +     T   VL ACA    I  
Sbjct: 405 SLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRH 464

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
              +H  I     + + V+  SLI+ YA+CG +  A ++F  + E ++I+W A+ISGY +
Sbjct: 465 AGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYAL 524

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           HG   +A+ELF RM    V  N++TFVA+LS C   GLV  G  +F SMR ++G+ P +E
Sbjct: 525 HGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSME 584

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ C+V L GRAG LN+A +F+ D I   P+  VW A+L +C +HKN  LG   AE +L 
Sbjct: 585 HYTCIVRLLGRAGRLNDALQFIGD-IPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE 643

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           +EP++   YV+LSN+YA AG +D+V ++R  M   G++K  G S VE+  + + FS+G  
Sbjct: 644 IEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSV 703

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
            HP+   I   L+ L  +    GY+P+    +H++++E++   L  HSE+LALA+GL+ T
Sbjct: 704 DHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMT 763

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            PG  IRI+KNLR C+DCH+A   IS    REIIVRD  RFHHF+ G CSC DYW
Sbjct: 764 PPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 139/277 (50%), Gaps = 3/277 (1%)

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           +SC+ L+I    + +H     +  D++ HV  AL++ YAK  ++  AR  F+ +P   V+
Sbjct: 252 QSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVI 311

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
             + MIS Y Q+   ++A  LF  +    V P+  +   VL AC  +  +D G+ +H   
Sbjct: 312 LLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHA 371

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  G + ++ +  +L++ YA+C ++  + +IF  + + N ++W  ++ G+   G G EA+
Sbjct: 372 IKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEAL 431

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
            +F  M+A  +    VT+ +VL ACA    ++   ++  S+ +       V  +  ++D 
Sbjct: 432 SVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGN-SLIDT 490

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           + + G + +A K  + ++        W A++    +H
Sbjct: 491 YAKCGYIRDALKVFQHLMERDIIS--WNAIISGYALH 525



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 167/336 (49%), Gaps = 8/336 (2%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+  +  ++L+A   +  L   +Q+H H I  G+     +   L+        +  + +I
Sbjct: 343 PNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKI 402

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   +   +NT+++  S++    ++L  +  M  + +  +  T+S+V+++CA  + +
Sbjct: 403 FSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASI 462

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
                +HC +  S +++D  +  +L++ YAK   +  A KVF  + ++ +++WN++ISGY
Sbjct: 463 RHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGY 522

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI-VGQGLDVN 241
             +G A +A+ LF+ M    V  +  T V +L+ C   G ++ G  + + + +  G+  +
Sbjct: 523 ALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPS 582

Query: 242 VVLATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +   T ++ +  R G ++ A + I D+ S  + + W A++S   +H     A+  F   +
Sbjct: 583 MEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIH--KNVALGRFSAEK 640

Query: 301 AHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMR 335
              + P +  T+V + +  A AG + +   +  SMR
Sbjct: 641 ILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMR 676



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 140/309 (45%), Gaps = 23/309 (7%)

Query: 25  QQVHAHLIV-AGYGRSRSMLTK-LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNS 82
           + VH H++   G GR        LL++    G +  A+R+F  +P  +   F TL+  ++
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHA 138

Query: 83  -KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
            + +F   + LF RR+       + +  + ++K    +    L   VH   +  G+D + 
Sbjct: 139 QRGDFEAAAALF-RRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNA 197

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V + L++ Y+  + V  A  VF+ +  K  V W +M+S Y +N   + A          
Sbjct: 198 FVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRC------- 250

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
                + +C  +  +CA+ G       +H   +    D    +  +L++MYA+CG++  A
Sbjct: 251 -----AQSCSLLAISCARQG-------IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDA 298

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           R  F+M+   +VI  + MIS Y       +A ELF R+    V PN  +  +VL AC + 
Sbjct: 299 RLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNM 358

Query: 322 GLVQEGHRV 330
             +  G ++
Sbjct: 359 VQLDFGKQI 367



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 2/161 (1%)

Query: 125 GRAVHCHVFVSGYDS--DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           GRAVH HV   G     DL     L+N Y K   +  AR++FDRMP++++V++ +++  +
Sbjct: 78  GRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAH 137

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q G  + A  LF  +R  G   +      +L     +    L   VH      G D N 
Sbjct: 138 AQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNA 197

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
            + + LI+ Y+ C  VS A  +F+ +   + + WTAM+S Y
Sbjct: 198 FVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCY 238


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/642 (36%), Positives = 359/642 (55%), Gaps = 74/642 (11%)

Query: 9   PAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLL--SLVCDAGFITYAQRIFFCI 66
           P   ++L     L   +Q+HA+++  G      +  KLL    +  +  + YA R+F   
Sbjct: 6   PLCLSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYT 65

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSN-YTFSAVIKSCAHLSILNLG 125
           P+PD F+ NTLI    +++   DSLL +  M  ++ SP + ++F+ ++K+ A+L  + +G
Sbjct: 66  PNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVG 125

Query: 126 RAVHC---------HVFVSGYDSDLHVQAALVNF-------------------------- 150
             +HC         H+FV      ++ +   V F                          
Sbjct: 126 IQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRG 185

Query: 151 ---------------------------YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
                                      Y K+  +++AR++F  MP K  V+W++MI G+ 
Sbjct: 186 GDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFA 245

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
            NG+ +EA   F  ++  G+ P+ T+   VL+ACAQ G ++ G+ +H FI   GL   V 
Sbjct: 246 HNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVS 305

Query: 244 LATSLINMYARCGNVSKAREIFD-MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           +  +L++ Y++CGNV  A+ +F+ +M+E N+++WT+M++   MHG+G EA+ +FH+M   
Sbjct: 306 VNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEES 365

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+RP+ + F+++L AC+HAGLV++G   F  M+  Y + P +EH+ CMVDL+GRAG L +
Sbjct: 366 GIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQK 425

Query: 363 AYKFVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           AY+FV     + P P    +W  +LGAC MH +  L  +V E L  ++P N   +V+LSN
Sbjct: 426 AYEFV----CQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSN 481

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
            YA+AG+      VR  M ++ + K  G+S +EVD+  Y F  G K +  T E Y+ L E
Sbjct: 482 AYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKE 541

Query: 480 LMGRCR-EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           ++ R R E GYVPE    +H++EEEE+E S+  HSEKLA+AFG+ R   G TIRIVKNLR
Sbjct: 542 IIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLR 601

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+ +K IS     EI+VRDR RFH FK G CSC DYW
Sbjct: 602 ICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/581 (38%), Positives = 345/581 (59%), Gaps = 8/581 (1%)

Query: 3   NKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           + +P+S  +   L A  RL  L   + V      AGYG    + + LL L    G +  A
Sbjct: 102 SARPNSTTFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEA 161

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
            R+F  +P  D   ++T++     A    ++L  Y RM    +S        VI++C   
Sbjct: 162 IRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMST 221

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
               +G +VH  +       D+    +LV+ YAK+ ++DVA +VF  MP ++ V W+++I
Sbjct: 222 GNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALI 281

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           SG+ QNG A EA+ LF  ++  G+ P S   V  L ACA +G + LG+ +H FI+ + L+
Sbjct: 282 SGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRR-LE 340

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
              +L T++++MY++CG++  AR++F+ +S  +++ W A+I+  G HG G +A+ LF  +
Sbjct: 341 WQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQEL 400

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
              G++P++ TF ++LSA +H+GLV+EG   F  M +E+G+ P  +H+VC+VDL  R+GL
Sbjct: 401 NETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGL 460

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           + EA   +  +  E P  A+W  +L  C  +K  +LG  +A+ +L + PE+ G   ++SN
Sbjct: 461 VEEANDMLASMQTE-PTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSN 519

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           +YA A + D+V  +R +M   G KK  GYS +EV    + F M D+SHP   EI + + +
Sbjct: 520 LYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAK 579

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           L    R+ GYVP +E   H+L+E++    L YHSE+LA+AFGL+ TSPG  + I+KNLR+
Sbjct: 580 LNSEMRKLGYVPRTEFVYHDLDEDQL---LSYHSERLAIAFGLLNTSPGTRLVIIKNLRV 636

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCH AIK+IS   +REI+VRD  RFHHFK G+CSC DYW
Sbjct: 637 CGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 176/319 (55%), Gaps = 9/319 (2%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N L+  +S+A     +L  +R  + S+  P++ TF+  + +CA L  L+   +V    F
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFR-ALPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            +GY  D+ V +AL++ Y++   ++ A +VFD MP K  VAW++M++G+   G   EA+ 
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           +++ MR+ GV+ D    V V+ AC   G+  +G  VH  ++   + ++VV  TSL++MYA
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYA 254

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           + G++  A ++F MM   N + W+A+ISG+  +G   EA++LF  ++A G++P +   V+
Sbjct: 255 KNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVS 314

Query: 314 VLSACAHAGLVQEGHRV--FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
            L ACA  G ++ G  +  F   R E+  + G      ++D++ + G L  A K    + 
Sbjct: 315 ALLACASVGFLKLGKSIHGFILRRLEWQCILG----TAVLDMYSKCGSLESARKLFNKLS 370

Query: 372 GEKPAPAVWTAMLGACKMH 390
                  +W A++  C  H
Sbjct: 371 SRD--LVLWNAIIACCGTH 387


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/632 (35%), Positives = 351/632 (55%), Gaps = 80/632 (12%)

Query: 26  QVHAHLIVAGYG-RSRSMLTKLLS----------LVCDAGFITYAQRIFFCIPSPDSFLF 74
           Q+H  ++  G G  S S+L  LLS          + C A  +  A+++F  +P  D   +
Sbjct: 169 QMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSA--MVSARKLFDEMPKRDELTW 226

Query: 75  NTLI---IRNSKANFS----------------------------TDSLLFYRRMIVSNIS 103
            T+I   +RN   N +                             ++L   R+M    I 
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD----LHVQAALVNFYAKSNNVDV 159
             + T++ +I +CA++    +G+ +H ++  +  + +    L V  AL+  Y K+N VD 
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDE 346

Query: 160 ARKVFDRMPDKSVVAWNSMISGY-------------------------------EQNGFA 188
           ARK+F  MP ++++ WN+++SGY                                QNGF 
Sbjct: 347 ARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFG 406

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
            E + LF  MR  G  P        L AC+ LG ++ GR +H  +V  G + ++ +  ++
Sbjct: 407 DEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAM 466

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           I+MYA+CG V  A  +F  M  +++++W +MI+  G HG+G +A+ELF +M   GV P+ 
Sbjct: 467 ISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDR 526

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           +TF+ VL+AC+HAGLV++G   F SM + YG+ P  +H+  MVDLF RAG+ + A + V 
Sbjct: 527 ITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYA-RIVI 585

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
           D +  KP   VW A+L  C++H N DLG+E AE L  + P+N G YV+LSNIYA  GR +
Sbjct: 586 DSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWN 645

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
            V  VR +M  + ++K    S +EV+ K ++F + D  HP    +Y+YL++L    ++ G
Sbjct: 646 DVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLG 705

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           Y+P+++  +H++E E++E++L  HSEKLA+ FG+M+  P  T+R+ KN+R+C DCH+A K
Sbjct: 706 YIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNAFK 765

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           F+S    REIIVRDR RFHHFK G CSC DYW
Sbjct: 766 FMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 120/510 (23%), Positives = 216/510 (42%), Gaps = 125/510 (24%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P  PA  ++ +A         VHAH+I +G+      L +LL + C +  + YA+++F  
Sbjct: 23  PQDPASFSLARA---------VHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEE 73

Query: 66  IPSPDSFLFNTLI--------------IRNSKANFSTDSLLF------------------ 93
           IP+PD+    TLI              I N    +  DS+ +                  
Sbjct: 74  IPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALE 133

Query: 94  -YRRMIVSNISPSNYTFSAVIKS------------------------CAHLSILNLGRAV 128
            +R M   +  P ++TF++V+ +                        C   S+LN   +V
Sbjct: 134 LFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSV 193

Query: 129 H----------CHVFVSG---YDS----DLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           +          C   VS    +D     D      ++  Y ++++++ AR+VF+ M +  
Sbjct: 194 YVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENL 253

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
             AWN+MISGY   G  +EA+ L   MR  G+  D  T   +++ACA +G   +G+ +H 
Sbjct: 254 GAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHA 313

Query: 232 FIVGQGLDVN----VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY---- 283
           +I+   L+ N    + ++ +LI +Y +   V +AR+IF  M   N+I W A++SGY    
Sbjct: 314 YILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAG 373

Query: 284 ---------------------------GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
                                        +G+G E ++LF +MR  G  P +  F   L+
Sbjct: 374 RMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALT 433

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC+  G ++ G ++ A +    G    +     M+ ++ + G++  A    + V    P+
Sbjct: 434 ACSVLGALENGRQLHAQLVH-LGYESSLSVGNAMISMYAKCGVVEAA----ESVFVTMPS 488

Query: 377 PAV--WTAMLGACKMHKNFDLGVEVAEHLL 404
             +  W +M+ A   H +    +E+ + +L
Sbjct: 489 VDLVSWNSMIAALGQHGHGVKAIELFDQML 518



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 21/234 (8%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P   A+   L A   L  L+   Q+HA L+  GY  S S+   ++S+    G +  A+ 
Sbjct: 422 EPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAES 481

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +PS D   +N++I    +      ++  + +M+   + P   TF  V+ +C+H  +
Sbjct: 482 VFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGL 541

Query: 122 LNLGRAVHCHVFVSGYDS------DLHVQAALVNFYAKSNNVDVARKVFDRMPDK-SVVA 174
           +  GR    H F S  +S      + H  A +V+ + ++     AR V D MP K     
Sbjct: 542 VEKGR----HYFNSMLESYGITPCEDHY-ARMVDLFCRAGMFSYARIVIDSMPSKPGAPV 596

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           W ++++G   +G     +G+    + F + P +     +L+        D+GRW
Sbjct: 597 WEALLAGCRIHG--NMDLGIEAAEQLFKLMPQNDGTYVLLSNIYA----DVGRW 644


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/595 (38%), Positives = 347/595 (58%), Gaps = 45/595 (7%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFI---TYAQRIFFCIPSPDSFLFNTLIIRN 81
           +Q+HAH+      +S  ++T LL  +     I   TY   +F  + SP+ FL++ LI   
Sbjct: 28  KQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSALIRAY 87

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           ++      S+  Y  M+ +N+SP ++TFSA+     + S   LG  +H H F+ G+ +DL
Sbjct: 88  ARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPS---LGSQLHLHAFLFGFVNDL 144

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVV---------------------------- 173
           +V   +++ Y K   +D ARKVFD MP + VV                            
Sbjct: 145 YVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVK 204

Query: 174 ---AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH 230
              AW SM++GY QN   K+A+  F  MR+ GV  D  T V  ++ACAQLG      W+ 
Sbjct: 205 DMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIR 264

Query: 231 EFIVGQ--GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           E       G   NV + ++LI+MY++CGNV +A  +F  M E+NV ++++MI G+ +HG 
Sbjct: 265 EIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGR 324

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
              A++LF+ M  +G++PN+VTFV + +AC+HAG+V++G ++F +M++ YG+ P  +H+ 
Sbjct: 325 ARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYA 384

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
           CM DL GRAG L +A + V+ +  E P   VW A+LGA  +H N D+    +  L  +EP
Sbjct: 385 CMADLLGRAGHLEKALQLVQTMPME-PNGGVWGALLGASHIHGNPDVAEIASRSLFELEP 443

Query: 409 ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYL---FSMGDK 465
           +N G+Y++LS  YALA + D V  VR +M +K L+K+ G S VE   KN +   F  GD 
Sbjct: 444 DNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEA--KNGIIHEFFAGDV 501

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
            HP  NEI + LD+L+ R +  GY P+  S  +++++E +   L  HSEKLALA+GL+ T
Sbjct: 502 KHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYGLLST 561

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             G TI+I+KNLR+C DCH  +   S  T R+IIVRD +RFHHF  G+CSC ++W
Sbjct: 562 DAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/610 (37%), Positives = 347/610 (56%), Gaps = 35/610 (5%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+S     ++ A  +L+ LQ   QV   +       +  M+  L+ +    G I  A++
Sbjct: 237 RPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARK 296

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF      +  L+NT++    +   + + L     M+     P   T  + + +C+ L  
Sbjct: 297 IFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDD 356

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           ++ G+  H +V  +G +   +V  A++N Y K    ++A +VFDRM +K+ V+WNS+I+G
Sbjct: 357 VSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAG 416

Query: 182 YEQNG-------------------------------FAKEAIGLFNLMRDFGVNPDSTTC 210
           + +NG                                 KEAI LF +M+  G+  D  T 
Sbjct: 417 FVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTM 476

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           V V +AC  LG +DL +W+H +I  + +  ++ L T+L++M+ARCG+   A ++F+ M +
Sbjct: 477 VGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVK 536

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            +V AWTA I    M G GT A+ELF  M   G++P+ V FVA+L+A +H GLV++G  +
Sbjct: 537 RDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHI 596

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           F SM+  YG+ P   H+ CMVDL GRAGLL+EA   +  +  E P   +W ++L AC++H
Sbjct: 597 FRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQME-PNDVIWGSLLAACRVH 655

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
           KN D+    AE +  ++PE  G +V+LSNIYA AGR D V  VR  + +KG  K  G S+
Sbjct: 656 KNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSS 715

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLR 510
           +E++ K + F+ GD+SHP    I   L E+  R R+ GYVP+  + + ++ E+E+EY L 
Sbjct: 716 IEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLS 775

Query: 511 YHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
            HSEKLA+AF L+ T  GM IR+ KNLR+C DCHS  K +S + +REIIVRD  RFH F+
Sbjct: 776 RHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQ 835

Query: 571 RGSCSCLDYW 580
           +G CSC DYW
Sbjct: 836 QGFCSCGDYW 845



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 175/328 (53%), Gaps = 8/328 (2%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF---IT 57
           +K    H  +     K    +  L+Q+H+ +   G       LT L+S   + G    + 
Sbjct: 26  LKILTKHRSSPTGSFKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLE 85

Query: 58  YAQRIFFCIPSPDS-----FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAV 112
           YAQ+        +      ++F++LI   S       +++ +R+++     P N+TF  V
Sbjct: 86  YAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFV 145

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           + +C   + L  G  VH  +   G++ D+ V+ +L++FY +   +D  R+VFD+M +++V
Sbjct: 146 LSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNV 205

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           V+W S+I GY + G  KEA+ LF  M + G+ P+S T V V++ACA+L D+ LG  V   
Sbjct: 206 VSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTC 265

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           I    L+VN ++  +L++MY +CG + KAR+IFD   + N++ +  ++S Y   G   E 
Sbjct: 266 IGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREV 325

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAH 320
           + +   M  HG RP+ +T ++ +SAC+ 
Sbjct: 326 LAVLGEMLKHGPRPDRITMLSAVSACSE 353



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/453 (25%), Positives = 210/453 (46%), Gaps = 38/453 (8%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P +  +  +L A  +   L    QVH  ++  G+ R   +   L+    + G I   +R+
Sbjct: 137 PDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRV 196

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   +   + +LI   +K     +++  +  M+   I P++ T   VI +CA L  L
Sbjct: 197 FDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDL 256

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            LG  V   +     + +  +  ALV+ Y K   +D ARK+FD   DK++V +N+++S Y
Sbjct: 257 QLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNY 316

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            + G A+E + +   M   G  PD  T +  ++AC++L D+  G+W H +++  GL+   
Sbjct: 317 VRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWD 376

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG--------------- 287
            +  ++INMY +CG    A  +FD M     ++W ++I+G+  +G               
Sbjct: 377 NVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDS 436

Query: 288 ----YGT------------EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
               + T            EA+ELF  M++ G+  + VT V V SAC + G +     + 
Sbjct: 437 DLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIH 496

Query: 332 ASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHK 391
             ++++  +   +     +VD+F R G    A +    ++  K   + WTA +GA  M  
Sbjct: 497 GYIKKK-DIHFDMHLGTALVDMFARCGDPQSAMQVFNKMV--KRDVSAWTAAIGAMAMEG 553

Query: 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
           N    +E+ + +L  +   P   V ++ + AL+
Sbjct: 554 NGTGAIELFDEMLQ-QGIKPDGVVFVALLTALS 585



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 106/197 (53%), Gaps = 1/197 (0%)

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           ++S+I G+   G   +AI +F  +   G  PD+ T   VL+AC +   +  G  VH  IV
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIV 166

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             G + ++ +  SLI+ Y  CG +   R +FD MSE NV++WT++I GY   G   EAV 
Sbjct: 167 KMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVS 226

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
           LF  M   G+RPN+VT V V+SACA    +Q G +V   +  E  L         +VD++
Sbjct: 227 LFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCI-GELELEVNALMVNALVDMY 285

Query: 355 GRAGLLNEAYKFVKDVI 371
            + G +++A K   + +
Sbjct: 286 MKCGAIDKARKIFDECV 302


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/552 (41%), Positives = 329/552 (59%), Gaps = 43/552 (7%)

Query: 67  PSPDSFLFNTLIIRNSKANFSTDS----LLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           P+ +SF++N LI  ++++     +    L  Y RM +  + P  +TF  +++S   ++  
Sbjct: 20  PNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQS---INTP 76

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFY------------------------------- 151
           + GR +H  + + G  +D  VQ +L+N Y                               
Sbjct: 77  HRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHAN 136

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF---GVNPDST 208
           AK+  + +ARK+FD+MP+K+V++W+ MI GY   G  K A+ LF  ++      + P+  
Sbjct: 137 AKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEF 196

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           T   VL+ACA+LG +  G+WVH +I   G+ ++VVL TSLI+MYA+CG++ +A+ IFD +
Sbjct: 197 TMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNL 256

Query: 269 S-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG 327
             E +V+AW+AMI+ + MHG   E +ELF RM   GVRPN VTFVAVL AC H GLV EG
Sbjct: 257 GPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEG 316

Query: 328 HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
           +  F  M  EYG+ P ++H+ CMVDL+ RAG + +A+  VK +  E P   +W A+L   
Sbjct: 317 NEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPME-PDVMIWGALLNGA 375

Query: 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVG 447
           ++H + +        LL ++P N   YV+LSN+YA  GR   V  +R++M  +G+KK  G
Sbjct: 376 RIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPG 435

Query: 448 YSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREY 507
            S VEVD     F  GD SHP    +Y  LDE+M R  + GY   +   + +L+EE +E+
Sbjct: 436 CSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEF 495

Query: 508 SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFH 567
           +L  HSEKLA+A+  +RTSPG TIRIVKNLR+C DCH AIK IS   NREIIVRD  RFH
Sbjct: 496 ALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFH 555

Query: 568 HFKRGSCSCLDY 579
           HFK G CSC DY
Sbjct: 556 HFKNGLCSCKDY 567



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 149/300 (49%), Gaps = 37/300 (12%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+HA +++ G      + T L+++    G  T+A++ F  I  PD   +N +I  N+KA
Sbjct: 80  RQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKA 139

Query: 85  NF-------------------------------STDSLLFYRRMIV---SNISPSNYTFS 110
                                               +L  +R +     S + P+ +T S
Sbjct: 140 GMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMS 199

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM-PD 169
           +V+ +CA L  L  G+ VH ++  +G   D+ +  +L++ YAK  +++ A+ +FD + P+
Sbjct: 200 SVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPE 259

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           K V+AW++MI+ +  +G ++E + LF  M + GV P++ T V VL AC   G +  G   
Sbjct: 260 KDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEY 319

Query: 230 HEFIVGQ-GLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHG 287
            + ++ + G+   +     ++++Y+R G +  A  +   M  E +V+ W A+++G  +HG
Sbjct: 320 FKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHG 379


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/581 (39%), Positives = 341/581 (58%), Gaps = 24/581 (4%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSML---TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTL 77
           +  L+Q+HA  +   Y    + L    K+L L      + YA R+F  I +  SF++NTL
Sbjct: 118 MSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTL 177

Query: 78  IIRNSKANFS--TDSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           I R    + S   ++ + YR+M+     SP  +TF  V+K+CA++   + G+ VHC +  
Sbjct: 178 I-RACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK 236

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
            G+  D++V   L++ Y     +D+ARKVFD MP++S+V+WNSMI    + G    A+ L
Sbjct: 237 HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQL 296

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDV--NVVLATSLINM 251
           F  M+     PD  T   VL+ACA LG + LG W H F++ +  +DV  +V++  SLI M
Sbjct: 297 FREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEM 355

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM--RAHGVRPNNV 309
           Y +CG++  A ++F  M + ++ +W AMI G+  HG   EA+  F RM  +   VRPN+V
Sbjct: 356 YCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSV 415

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           TFV +L AC H G V +G + F  M ++Y + P +EH+ C+VDL  RAG + EA   V  
Sbjct: 416 TFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMS 475

Query: 370 VIGEKPAPAVWTAMLGAC-KMHKNFDLGVEVAEHLLSVEPEN-------PGHYVMLSNIY 421
            +  KP   +W ++L AC K   + +L  E+A +++  + +N        G YV+LS +Y
Sbjct: 476 -MPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVY 534

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A A R + V +VR +M + G++K  G S++E++  ++ F  GD SHP T +IYQ L  + 
Sbjct: 535 ASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVID 594

Query: 482 GRCREAGYVPESESA--MHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
            R R  GY+P+   A  +    +  +EYSLR HSE+LA+AFGL+   P   IRI KNLR+
Sbjct: 595 DRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRV 654

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCH   K IS   N EIIVRDR+RFHHFK GSCSCLDYW
Sbjct: 655 CNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 695


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/562 (37%), Positives = 337/562 (59%), Gaps = 26/562 (4%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           R+    ++  ++++ GY ++              G ++ A+R+F  +P  D F +  ++ 
Sbjct: 240 RMPVRDKISWNIMITGYAQN--------------GLLSEARRLFEELPIRDVFAWTAMV- 284

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSN-YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
               + F  + +L     I   +   N  +++A+I        +   R     +F     
Sbjct: 285 ----SGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKAR----ELFDQMPS 336

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
            +      +V  YA+  N+D A+ +FD MP +  ++W +MISGY Q+G ++EA+ LF  M
Sbjct: 337 RNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
           +  G   + +   C L++CA++  ++LG+ +H  +V  G     +   +L+ MY +CG++
Sbjct: 397 KRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSI 456

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
            +A ++F+ ++E ++++W  MI+GY  HG+G EA+ LF  M+   ++P++VT V VLSAC
Sbjct: 457 EEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSAC 515

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           +H GLV +G   F SM Q YG+    +H+ CM+DL GRAG L+EA   +K  +   P  A
Sbjct: 516 SHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKS-MPFYPDAA 574

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
            W A+LGA ++H + +LG + AE +  +EP+N G YV+LSN+YA +GR   V  +R+ M 
Sbjct: 575 TWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMR 634

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
            KG+KK  GYS VE+  K ++F++GD SHP    IY YL+EL    ++ G+V  ++  +H
Sbjct: 635 DKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLH 694

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
           ++EEEE+E+ L+YHSEKLA+AFG++   PG  IR++KNLR+C DCH+AIK IS  T R+I
Sbjct: 695 DVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQI 754

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           IVRD  RFHHF  GSCSC DYW
Sbjct: 755 IVRDSNRFHHFSEGSCSCGDYW 776



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 16/233 (6%)

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           S  T++A+I      +  +  R     VF    D DL     +++ Y K+ N+  AR +F
Sbjct: 90  STVTYNAMISGYLSNNKFDCAR----KVFEKMPDRDLISWNVMLSGYVKNGNLSAARALF 145

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           ++MP+K VV+WN+M+SG+ QNGF +EA  +F+ M    +  +  +   +L+A  Q G I+
Sbjct: 146 NQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIE 201

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
             R     +    +D  +V    L+  Y R   +  AR +FD M   + I+W  MI+GY 
Sbjct: 202 DAR----RLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYA 257

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
            +G  +EA  LF  +    V      + A++S     G++ E  R+F  M ++
Sbjct: 258 QNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEMPEK 306



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 138/334 (41%), Gaps = 53/334 (15%)

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN------------ 185
           DSD+      ++ Y +    + A  VF+ M  +S V +N+MISGY  N            
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 186 --------------GFAKE-----AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
                         G+ K      A  LFN M +     D  +   +L+  AQ G ++  
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPE----KDVVSWNAMLSGFAQNGFVEEA 172

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
           R     I  Q L  N +    L++ Y + G +  AR +FD   +  +++W  ++ GY   
Sbjct: 173 R----KIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRK 228

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
               +A  LF RM       + +++  +++  A  GL+ E  R+F  +      +  V  
Sbjct: 229 KRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEELP-----IRDVFA 279

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406
              MV  F + G+L+EA +  +++   +     W AM+      +  +   E+ + + S 
Sbjct: 280 WTAMVSGFVQNGMLDEATRIFEEM--PEKNEVSWNAMIAGYVQSQQIEKARELFDQMPS- 336

Query: 407 EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
              N   +  +   YA  G +D+ +++ + M Q+
Sbjct: 337 --RNTSSWNTMVTGYAQCGNIDQAKILFDEMPQR 368


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/582 (40%), Positives = 342/582 (58%), Gaps = 26/582 (4%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSML---TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTL 77
           +  L+Q+HA  +   Y    + L    K+L L      + YA R+F  I +  SF++NTL
Sbjct: 61  MSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTL 120

Query: 78  IIRNSKANFS--TDSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           I R    + S   ++ + YR+M+     SP  +TF  V+K+CA++   + G+ VHC +  
Sbjct: 121 I-RACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK 179

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
            G+  D++V   L++ Y     +D+ARKVFD MP++S+V+WNSMI    + G    A+ L
Sbjct: 180 HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQL 239

Query: 195 FNLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDV--NVVLATSLIN 250
           F  M R F   PD  T   VL+ACA LG + LG W H F++ +  +DV  +V++  SLI 
Sbjct: 240 FREMQRSF--EPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIE 297

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM--RAHGVRPNN 308
           MY +CG++  A ++F  M + ++ +W AMI G+  HG   EA+  F RM  +   VRPN+
Sbjct: 298 MYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNS 357

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           VTFV +L AC H G V +G + F  M ++Y + P +EH+ C+VDL  RAG + EA   V 
Sbjct: 358 VTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVM 417

Query: 369 DVIGEKPAPAVWTAMLGAC-KMHKNFDLGVEVAEHLLSVEPEN-------PGHYVMLSNI 420
             +  KP   +W ++L AC K   + +L  E+A +++  + +N        G YV+LS +
Sbjct: 418 S-MPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRV 476

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA A R + V +VR +M + G++K  G S++E++  ++ F  GD SHP T +IYQ L  +
Sbjct: 477 YASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVI 536

Query: 481 MGRCREAGYVPESESA--MHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
             R R  GY+P+   A  +    +  +EYSLR HSE+LA+AFGL+   P   IRI KNLR
Sbjct: 537 DDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLR 596

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH   K IS   N EIIVRDR+RFHHFK GSCSCLDYW
Sbjct: 597 VCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/531 (38%), Positives = 341/531 (64%), Gaps = 5/531 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +   +++F  + S D   +N++I  + +      ++  +  M  S +SP   T  ++ 
Sbjct: 219 GMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLA 278

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYD-SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
            + A    +  GR+VHC++   G+D  D+    A+V+ YAK + ++ A+++FD MP +  
Sbjct: 279 SAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDA 338

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           V+WN++I+GY QNG A EAI +++ M+   G+ P   T V VL A + LG +  G  +H 
Sbjct: 339 VSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHA 398

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
             +  GL+++V + T +I++YA+CG + +A  +F+     +   W A+ISG G+HG+G +
Sbjct: 399 LSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAK 458

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           A+ LF +M+  G+ P++VTFV++L+AC+HAGLV +G   F  M+  YG+ P  +H+ CMV
Sbjct: 459 ALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMV 518

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411
           D+FGRAG L++A+ F+++ +  KP  A+W A+LGAC++H N ++G   +++L  ++P+N 
Sbjct: 519 DMFGRAGQLDDAFDFIRN-MPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNV 577

Query: 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKS--HPN 469
           G+YV++SN+YA  G+ D V+ VR+++ ++ L+K  G+S++EV +   +F  G++   HP 
Sbjct: 578 GYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQ 637

Query: 470 TNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGM 529
             EI + L +L+ + R  GYVP+    + ++EE+E+E  L  HSE+LA+AFG++ T P  
Sbjct: 638 HEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPRT 697

Query: 530 TIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            + I KNLR+C DCH+A K+IS  T REIIVRD  RFHHFK G CSC D+W
Sbjct: 698 PLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/435 (29%), Positives = 224/435 (51%), Gaps = 15/435 (3%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLT-KLLSLVCDAGFITYAQRIFFCIPSP 69
           +  +L+A        Q+HA  +  G  R  +  +  L+      G +  A R F  +   
Sbjct: 74  FPPLLRAAQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHR 133

Query: 70  DSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           D   +N ++    RN++A    +++  + RM++  ++    T S+V+  C  L    L  
Sbjct: 134 DVPAWNAMLSGLCRNARA---AEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALAL 190

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
           A+H +    G D +L V  A+++ Y K   ++  RKVFD M  + +V WNS+ISG+EQ G
Sbjct: 191 AMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGG 250

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV-NVVLA 245
               A+ +F  MRD GV+PD  T + + +A AQ GDI  GR VH ++V +G DV +++  
Sbjct: 251 QVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAG 310

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GV 304
            ++++MYA+   +  A+ +FD M   + ++W  +I+GY  +G  +EA+ ++  M+ H G+
Sbjct: 311 NAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGL 370

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
           +P   TFV+VL A +H G +Q+G R+ A +  + GL   V    C++DL+ + G L+EA 
Sbjct: 371 KPIQGTFVSVLPAYSHLGALQQGTRMHA-LSIKTGLNLDVYVGTCVIDLYAKCGKLDEAM 429

Query: 365 KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL- 423
              +        P  W A++    +H +    + +   +   E  +P H   +S + A  
Sbjct: 430 LLFEQTPRRSTGP--WNAVISGVGVHGHGAKALSLFSQMQQ-EGISPDHVTFVSLLAACS 486

Query: 424 -AGRMDRVEVVRNIM 437
            AG +D+     N+M
Sbjct: 487 HAGLVDQGRNFFNMM 501



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 152/322 (47%), Gaps = 14/322 (4%)

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D     ALV+ Y +   V  A + FD M  + V AWN+M+SG  +N  A EA+GLF  M 
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV 162

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             GV  D+ T   VL  C  LGD  L   +H + V  GLD  + +  ++I++Y + G + 
Sbjct: 163 MEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLE 222

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           + R++FD MS  +++ W ++ISG+   G    AVE+F  MR  GV P+ +T +++ SA A
Sbjct: 223 EVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIA 282

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEK 374
             G +  G  V   M +    +  +     +VD++ +   +  A +      V+D +   
Sbjct: 283 QCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVS-- 340

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP--GHYVMLSNIYALAGRMDRVEV 432
                W  ++     +      + V +H+   E   P  G +V +   Y+  G + +   
Sbjct: 341 -----WNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTR 395

Query: 433 VRNIMIQKGLKKHVGYSTVEVD 454
           +  + I+ GL   V   T  +D
Sbjct: 396 MHALSIKTGLNLDVYVGTCVID 417


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/586 (38%), Positives = 347/586 (59%), Gaps = 10/586 (1%)

Query: 1    MKNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
            M+   P+   Y +IL+    L  L   +Q+H H+I  G+  +  + + L+ +    G + 
Sbjct: 456  MEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLA 515

Query: 58   YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
             A RI   +P  D   +  +I    + +  +++L  +  M    I   N  F++ I +CA
Sbjct: 516  LALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACA 575

Query: 118  HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
             +  L  G+ +H   + +G+ +DL +  AL++ YA+   +  A   F+++ DK+ ++WNS
Sbjct: 576  GIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNS 635

Query: 178  MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
            ++SG  Q+G+ +EA+ +F  M       +  T    ++A A L +I  G+ +H  ++  G
Sbjct: 636  LVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTG 695

Query: 238  LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
             D    ++ SLI++YA+ G++S A   F+ MSE NVI+W AMI+GY  HG G EA+ LF 
Sbjct: 696  YDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFE 755

Query: 298  RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
             M+  G+ PN+VTFV VLSAC+H GLV+EG   F SM + + L+P  EH+VC+VDL GRA
Sbjct: 756  EMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRA 815

Query: 358  GLLNEAYKFVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            G L+ A +++K    E P PA   +W  +L AC +HKN ++G   A HLL +EPE+   Y
Sbjct: 816  GQLDRAMEYIK----EMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATY 871

Query: 415  VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIY 474
            V++SNIYA++ +    +  R +M   G+KK  G S +EV    + F  GDK HP TN+IY
Sbjct: 872  VLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIY 931

Query: 475  QYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIV 534
            +Y+  L  R  E GYV +S S ++E E+ +++     HSEKLA+AFGL+     + IR++
Sbjct: 932  EYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVM 991

Query: 535  KNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCH+ IK++S  +NR IIVRD  RFHHF  G CSC D+W
Sbjct: 992  KNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 209/409 (51%), Gaps = 10/409 (2%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P      ++L A  +++  +   Q+H  +I  G+     +   L++L   +  +  A+RI
Sbjct: 259 PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERI 318

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  + S D   +N+LI    +  FS  +L  + +M    + P   T ++++ +CA +  L
Sbjct: 319 FSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGAL 378

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           + G  +H H   +G  +D+ ++ +L++ Y+K  +V+ A K F     +++V WN M+  Y
Sbjct: 379 HKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAY 438

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q     ++  +F  M+  G+ P+  T   +L  C  LG + LG  +H  ++  G  +NV
Sbjct: 439 GQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNV 498

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            + + LI+MYA+ G ++ A  I   + E +V++WTAMI+GY  H   +EA++LF  M   
Sbjct: 499 YVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYR 558

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV--CMVDLFGRAGLL 360
           G++ +N+ F + +SACA    +++G ++ A   Q Y    G +  +   ++ L+ R G +
Sbjct: 559 GIQFDNIGFASAISACAGIRALRQGQQIHA---QSYAAGFGADLSINNALISLYARCGRI 615

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
            EAY    + IG+K   + W +++        F+  ++V   +L  E E
Sbjct: 616 QEAY-LAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 201/406 (49%), Gaps = 15/406 (3%)

Query: 6   PHSPAYEAILKA----GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           P+   +  +LKA          ++QVH+     G+  S  +   L+ L    G+I  A++
Sbjct: 157 PNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKK 216

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F CI   D   +  +I   S+     +++L +  M  S I P+ Y  S+V+ +   + +
Sbjct: 217 VFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQL 276

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
             LG  +HC V   G+ S+ +V   LV  Y++S  +  A ++F  M  +  V++NS+ISG
Sbjct: 277 FELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISG 336

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             Q GF+  A+ LF  M+   + PD  T   +L+ACA +G +  G  +H   +  G+  +
Sbjct: 337 LVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSAD 396

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           ++L  SL+++Y++C +V  A + F      N++ W  M+  YG     +++ E+F +M+ 
Sbjct: 397 IILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQM 456

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGL 359
            G+ PN  T+ ++L  C   G +  G ++   + +  G    V  +VC  ++D++ + G 
Sbjct: 457 EGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT-GFQLNV--YVCSVLIDMYAKYGQ 513

Query: 360 LNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHL 403
           L  A + ++ +    P   V  WTAM+     H  F   +++ E +
Sbjct: 514 LALALRILRRL----PEDDVVSWTAMIAGYVQHDMFSEALQLFEEM 555



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/473 (24%), Positives = 224/473 (47%), Gaps = 40/473 (8%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P      ++L A   +  L    Q+H+H I AG      +   LL L      +  A +
Sbjct: 359 KPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHK 418

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            F    + +  L+N +++   + +  +DS   +R+M +  + P+ +T+ +++++C  L  
Sbjct: 419 FFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGA 478

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L LG  +H HV  +G+  +++V + L++ YAK   + +A ++  R+P+  VV+W +MI+G
Sbjct: 479 LYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAG 538

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q+    EA+ LF  M   G+  D+      ++ACA +  +  G+ +H      G   +
Sbjct: 539 YVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGAD 598

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +  +LI++YARCG + +A   F+ + + N I+W +++SG    GY  EA+++F RM  
Sbjct: 599 LSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLR 658

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
                N  T+ + +SA A    +++G ++  SM  + G     E    ++ L+ ++G ++
Sbjct: 659 TEAEVNMFTYGSAISAAASLANIKQGQQIH-SMVLKTGYDSEREVSNSLISLYAKSGSIS 717

Query: 362 EAYKFVKD---------------------------------VIGEKPAPAVWTAMLGACK 388
           +A++   D                                 V G  P    +  +L AC 
Sbjct: 718 DAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACS 777

Query: 389 MHKNFDLGVEVAEHLLSVEPENPG--HYVMLSNIYALAGRMDR-VEVVRNIMI 438
                  G++  E +  +    P   HYV + ++   AG++DR +E ++ + I
Sbjct: 778 HIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPI 830



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 215/462 (46%), Gaps = 22/462 (4%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           N Q +    E  L +G   + ++ +H  +  +G+     ++  L+      G    A ++
Sbjct: 57  NYQNYLWLLEGCLTSGSLFETMR-LHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKV 115

Query: 63  FFCIPSPDSFLFNTLI--IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           F    +   F +N +I      K+NF       +RRM+   I+P+ YTF+ V+K+C    
Sbjct: 116 FDENSNRSVFSWNKMIHVFVAQKSNFQV--FCLFRRMLAEGITPNGYTFAGVLKACVGGD 173

Query: 121 I-LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
           I  N  + VH   F  G+DS   V   L++ Y+K+  ++ A+KVF+ +  K +V W +MI
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           SG  QNG  +EAI LF  M    + P       VL+A  ++   +LG  +H  ++  G  
Sbjct: 234 SGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFH 293

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
               +   L+ +Y+R   +  A  IF  M+  + +++ ++ISG    G+   A+ELF +M
Sbjct: 294 SETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKM 353

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEG-----HRVFASMRQEYGLLPGVEHHVCMVDLF 354
           +   ++P+ +T  ++LSACA  G + +G     H + A M  +  +L G      ++DL+
Sbjct: 354 QRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADI-ILEG-----SLLDLY 407

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            +   +  A+KF   +  E     +W  ML A     N     E+    + +E   P  +
Sbjct: 408 SKCADVETAHKFF--LXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQ-MQMEGMIPNQF 464

Query: 415 VMLSNIYALA--GRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
              S +      G +   E +   +I+ G + +V   +V +D
Sbjct: 465 TYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLID 506



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 12/200 (6%)

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           I L N M + GV  +    + +L  C   G +     +H  I   G D   +L  SL++ 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           Y R G+   A ++FD  S  +V +W  MI  +       +   LF RM A G+ PN  TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF----- 366
             VL AC    +     +   S    YG          ++DL+ + G +  A K      
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 367 VKDVIGEKPAPAVWTAMLGA 386
           +KD++        W AM+  
Sbjct: 223 MKDIV-------TWVAMISG 235


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/580 (37%), Positives = 334/580 (57%), Gaps = 5/580 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP    +  +LKA   L      QQ+HA  +  G+ R  S+  ++L        +   + 
Sbjct: 247 QPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRM 306

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  D   +N +I   S+A+    SL F+R M        N+ F+ ++   A+LS 
Sbjct: 307 LFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSS 366

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L +GR +HC   ++  DS LHV  +LV+ YAK    + A  +F  +P ++ V+W ++ISG
Sbjct: 367 LQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISG 426

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q G     + LF  MR   +  D +T   VL A A    + LG+ +H FI+  G   N
Sbjct: 427 YVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLEN 486

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V   + L++MYA+CG++  A ++F+ M + N ++W A+IS +  +G G  A+  F +M  
Sbjct: 487 VFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIE 546

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G++P++V+ + VL+AC+H G V++G   F +M   YG+ P  +H+ CM+DL GR G   
Sbjct: 547 SGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFA 606

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP-ENPGHYVMLSNI 420
           EA K + ++  E P   +W+++L AC++HKN  L    AE L S+E   +   YV +SNI
Sbjct: 607 EAEKLMDEMPFE-PDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNI 665

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA AG  ++V  V+  M ++G+KK   YS VEV+ K ++FS  D++HPN +EI + ++EL
Sbjct: 666 YAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINEL 725

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
                  GY P++ S + +++E+ +  SL+YHSE+LA+AF L+ T  G  I ++KNLR C
Sbjct: 726 TAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRAC 785

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH+AIK IS    REI VRD  RFHHF  G CSC DYW
Sbjct: 786 RDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 181/366 (49%), Gaps = 11/366 (3%)

Query: 26  QVHAHLIVAGYGRSRSMLTK--LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           QVHA  +  G+  +  +     LL   C+   +  A  +F  IP  DS  FNTLI    K
Sbjct: 168 QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEK 227

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
               T+S+  + +M  S   PS++TFS V+K+   L    LG+ +H     +G+  D  V
Sbjct: 228 DGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASV 287

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
              +++FY+K + V   R +FD MP+   V++N +IS Y Q    + ++  F  M+  G 
Sbjct: 288 GNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGF 347

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           +  +     +L+  A L  + +GR +H   +    D  + +  SL++MYA+C    +A  
Sbjct: 348 DRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAEL 407

Query: 264 IFDMMSELNVIAWTAMISGY---GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           IF  + +   ++WTA+ISGY   G+HG G   ++LF +MR   +R +  TF  VL A A 
Sbjct: 408 IFKSLPQRTTVSWTALISGYVQKGLHGAG---LKLFTKMRGSNLRADQSTFATVLKASAS 464

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
              +  G ++ A + +  G L  V     +VD++ + G + +A +  +++         W
Sbjct: 465 FASLLLGKQLHAFIIRS-GNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVS--W 521

Query: 381 TAMLGA 386
            A++ A
Sbjct: 522 NALISA 527



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 156/342 (45%), Gaps = 15/342 (4%)

Query: 53  AGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN--ISPSNYTFS 110
            G ++ A+ +F  +P      +  L+   ++ +   ++   +R+M  S+    P + TF+
Sbjct: 92  TGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFT 151

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSD--LHVQAALVNFYAKSNNVDVARKVFDRMP 168
            ++  C      N    VH      G+D++  L V   L+  Y +   +D+A  +F+ +P
Sbjct: 152 TLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIP 211

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           +K  V +N++I+GYE++G   E+I LF  MR  G  P   T   VL A   L D  LG+ 
Sbjct: 212 EKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQ 271

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H   V  G   +  +   +++ Y++   V + R +FD M EL+ +++  +IS Y     
Sbjct: 272 LHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQ 331

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH-- 346
              ++  F  M+  G    N  F  +LS  A+   +Q G ++         LL   +   
Sbjct: 332 YEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQ-----ALLATADSIL 386

Query: 347 HV--CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           HV   +VD++ +  +  EA    K +   +     WTA++  
Sbjct: 387 HVGNSLVDMYAKCEMFEEAELIFKSL--PQRTTVSWTALISG 426



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 4/176 (2%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM-RDFGVN 204
            +++ + K+ +V  AR +FD MPD++VV W  ++  Y +N    EA  LF  M R     
Sbjct: 84  TMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCT 143

Query: 205 -PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS--LINMYARCGNVSKA 261
            PD  T   +L  C      +    VH F V  G D N  L  S  L+  Y     +  A
Sbjct: 144 LPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLA 203

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
             +F+ + E + + +  +I+GY   G  TE++ LF +MR  G +P++ TF  VL A
Sbjct: 204 CVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM- 299
           N V   ++I+ + + G+VS AR++FD M +  V+ WT ++  Y  + +  EA +LF +M 
Sbjct: 78  NTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMC 137

Query: 300 -RAHGVRPNNVTFVAVLSACAHA 321
             +    P++VTF  +L  C  A
Sbjct: 138 RSSSCTLPDHVTFTTLLPGCNDA 160



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 8/129 (6%)

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
           R V   I+  G D +   +  ++    R G VS AR+++D M   N ++   MISG+   
Sbjct: 33  RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPGVE 345
           G  + A +LF  M    V    VT+  ++   A      E  ++F  M R     LP   
Sbjct: 93  GDVSSARDLFDAMPDRTV----VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPD-- 146

Query: 346 HHVCMVDLF 354
            HV    L 
Sbjct: 147 -HVTFTTLL 154


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/565 (38%), Positives = 331/565 (58%), Gaps = 29/565 (5%)

Query: 21  LKPLQQVHAHLI--VAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           +K  + VH +++  V       SM T L+ + C  G +  AQR+F  +       +  +I
Sbjct: 205 MKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMI 264

Query: 79  ---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
              IR+ + +    +   + RM+   + P+  T  ++I  C  +  L+LG+  H ++  +
Sbjct: 265 AGCIRSCRLDEGAKN---FNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRN 321

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G+   L +  AL++ Y K   V  AR +F+ +  K V  W+ +IS Y       +   LF
Sbjct: 322 GFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLF 381

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             M +  V P++ T V +L+ CA+ G +DLG+W H +I   GL+V+V+L T+LINMYA+C
Sbjct: 382 VEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKC 441

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G+V+ AR +F+   + ++  W  M++G+ MHG G EA+ELF  M +HGV PN++TFV++ 
Sbjct: 442 GDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIF 501

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
            AC+H+GL+                    EH+ C+VDL GRAG L+EA+  +++ +  +P
Sbjct: 502 HACSHSGLM--------------------EHYGCLVDLLGRAGHLDEAHNIIEN-MPMRP 540

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
              +W A+L ACK+HKN  LG   A  +L ++P+N G+ V+ SNIYA A R + V  VR 
Sbjct: 541 NTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVRE 600

Query: 436 IMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESES 495
            M   G+KK  G S +EV    + F  GDK+   T ++Y+ + E+  + RE+GY P + +
Sbjct: 601 AMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAA 660

Query: 496 AMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
            +  ++EEE+E +L YHSEKLA AFGL+ T+PG  IRIVKNLR+C DCH+A K +S    
Sbjct: 661 VLLNIDEEEKESALSYHSEKLATAFGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYG 720

Query: 556 REIIVRDRLRFHHFKRGSCSCLDYW 580
           R IIVRDR RFHHF  G CSC+ YW
Sbjct: 721 RTIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 183/356 (51%), Gaps = 14/356 (3%)

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           N+   +++K+CA  S  +LGR +H     +G+ SD+ V  AL+N Y K   +  AR VFD
Sbjct: 88  NFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFD 147

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           +MP++ VV+W +M+  Y ++    EA+ L   M+  GV       + ++A    L D+  
Sbjct: 148 QMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKS 207

Query: 226 GRWVHEFIVGQGLD--VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
           GR VH +IV    D  + V + T+LI+MY + G ++ A+ +FD +S+ +V++WT MI+G 
Sbjct: 208 GRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGC 267

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLP 342
                  E  + F+RM    + PN +T +++++ C   G +  G    A  +R  +G+  
Sbjct: 268 IRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSL 327

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK----MHKNFDLGVE 398
            +     ++D++G+ G +  A      V  +K    +W+ ++ A      M + F+L VE
Sbjct: 328 ALV--TALIDMYGKCGQVGYARALFNGV--KKKDVKIWSVLISAYAHVSCMDQVFNLFVE 383

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           +  +   V+P N     +LS + A AG +D  +     + + GL+  V   T  ++
Sbjct: 384 MLNN--DVKPNNVTMVSLLS-LCAEAGALDLGKWTHAYINRHGLEVDVILETALIN 436


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/546 (41%), Positives = 327/546 (59%), Gaps = 35/546 (6%)

Query: 69  PDSFLFNTLIIRNSKAN-FSTDSLLFYRRMIVSNI-SPSNYTFSAVIKSCAHLSILNLGR 126
           P+ F +N L+   S+ N + T    F  ++++ N  +P  YTF++V+K+CA L+ +  G+
Sbjct: 88  PNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQ 147

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAK-------------------------------SN 155
            VHC V   G +S+L V+ +LV+ Y K                               S 
Sbjct: 148 KVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSG 207

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR-DFGVNPDSTTCVCVL 214
            VD AR VFD M +K++V+W++MISGY +N    +AI LF  M+ + G+ P+  T V VL
Sbjct: 208 MVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVL 267

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
           +ACA LG +DLG+W+H FI    ++V + L  +L +MYA+CG V +A+ +F  M E +VI
Sbjct: 268 SACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVI 327

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
           +W+ +I G  M+GY  EA   F  M   G+ PN+++F+ +L+AC HAGLV +G   F  M
Sbjct: 328 SWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMM 387

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
            Q YG+ P +EH+ C+VDL  RAG L++A   +   +  +P   VW A+LG C+++K+ +
Sbjct: 388 PQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINS-MPMQPNVIVWGALLGGCRIYKDAE 446

Query: 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
            G  V   +L ++  + G  V L+N+YA  GR+D     R  M      K  G S +E++
Sbjct: 447 RGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEIN 506

Query: 455 QKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSE 514
              Y F MGD SHP +  IY  + EL  + + AGY P+++  +H ++EEE+E +L  HSE
Sbjct: 507 NSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSE 566

Query: 515 KLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSC 574
           KLALAFGL+ TS G TIRIVKNLR+C DCH AIK IS    REI+VRDR RFHHFK G C
Sbjct: 567 KLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKC 626

Query: 575 SCLDYW 580
           SC DYW
Sbjct: 627 SCNDYW 632



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 143/315 (45%), Gaps = 37/315 (11%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
            P    + ++LKA   L  +   Q+VH  +   G   +  +   L+ L    G    AQ+
Sbjct: 124 NPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQK 183

Query: 62  IFFCIPSPDSFLFNTLI-------------------IRNSKANFST------------DS 90
           +F  +   D   +NTLI                   +  +  ++ST            D+
Sbjct: 184 LFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADA 243

Query: 91  LLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
           +  +R+M     ++P++ T  +V+ +CAHL  L+LG+ +H  +  +  +  L +  AL +
Sbjct: 244 IELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALAD 303

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            YAK   V  A+ VF  M ++ V++W+ +I G    G+A EA   F  M + G+ P+  +
Sbjct: 304 MYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDIS 363

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVG-QGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
            + +L AC   G +D G    + +    G+   +     ++++ +R G + +A  + + M
Sbjct: 364 FMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSM 423

Query: 269 S-ELNVIAWTAMISG 282
             + NVI W A++ G
Sbjct: 424 PMQPNVIVWGALLGG 438


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/586 (38%), Positives = 341/586 (58%), Gaps = 42/586 (7%)

Query: 3   NKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           N +P    +  +LKA      +   +++H      G   +  +   L+S+    GF++ A
Sbjct: 135 NVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEA 194

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           + +   +   D   +N+L++  ++     D+L   R M    IS    T ++++ + ++ 
Sbjct: 195 RLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT 254

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
           +                                 + NV   + +F +M  KS+V+WN MI
Sbjct: 255 T---------------------------------TENVMYVKDMFFKMGKKSLVSWNVMI 281

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
             Y +N    EA+ L++ M   G  PD+ +   VL AC     + LG+ +H +I  + L 
Sbjct: 282 GVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLI 341

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            N++L  +LI+MYA+CG + KAR++F+ M   +V++WTAMIS YG  G G +AV LF ++
Sbjct: 342 PNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKL 401

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
           +  G+ P+++ FV  L+AC+HAGL++EG   F  M   Y + P +EH  CMVDL GRAG 
Sbjct: 402 QDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGK 461

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           + EAY+F++D+  E P   VW A+LGAC++H + D+G+  A+ L  + PE  G+YV+LSN
Sbjct: 462 VKEAYRFIQDMSME-PNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSN 520

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           IYA AGR + V  +RNIM  KGLKK+ G S VEV++  + F +GD+SHP ++EIY+ LD 
Sbjct: 521 IYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDV 580

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT-----SPGMTIRIV 534
           L+ + +E GYVP+SESA+H++EEE++E  L  HSEKLA+ F LM T         TIRI 
Sbjct: 581 LVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRIT 640

Query: 535 KNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KNLR+C DCH A K IS  T+REII+RD  RFH F+ G CSC DYW
Sbjct: 641 KNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 133/276 (48%), Gaps = 5/276 (1%)

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           R VH  + +     +  +   L+  YA   +V  ARKVFD +P+++V+  N MI  Y  N
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           GF  E + +F  M    V PD  T  CVL AC+  G I +GR +H      GL   + + 
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
             L++MY +CG +S+AR + D MS  +V++W +++ GY  +    +A+E+   M +  + 
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
            +  T  ++L A ++     E       M  + G    V  +V M+ ++ +  +  EA +
Sbjct: 239 HDAGTMASLLPAVSNT--TTENVMYVKDMFFKMGKKSLVSWNV-MIGVYMKNAMPVEAVE 295

Query: 366 FVK--DVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
                +  G +P     T++L AC       LG ++
Sbjct: 296 LYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKI 331


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/572 (36%), Positives = 349/572 (61%), Gaps = 5/572 (0%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y +++ A  R + L   + +HAHL  + +  S  +   L+ L C  G +  A+R+F  +P
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
           + D   + +LI   ++ +   ++L     M+     P+ +TF++++K+    +   +G  
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H       +  D++V +AL++ YA+   +D+A  VFD++  K+ V+WN++I+G+ + G 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            +  + +F  M+  G      T   V +A A +G ++ G+WVH  ++  G  ++  +  +
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           +++MYA+ G++  AR++FD + + +V+ W +M++ +  +G G EAV  F  MR  GV  N
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            +TF+++L+AC+H GLV+EG + F  M +EY L P ++H+V +VDL GRAGLLN+A  F+
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYF-DMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
              +  KP  AVW A+LG+C+MHKN  +G   A+H+  ++P++ G  V+L NIYA  G+ 
Sbjct: 426 FK-MPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQW 484

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           D    VR +M   G+KK    S VE++   ++F   D +HP + EIY+  +E+  + R+A
Sbjct: 485 DAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKA 544

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           GYVP ++  +  ++E+ER+  L+YHSEK+ALAF L+    G TIRI+KN+R+C DCHSA 
Sbjct: 545 GYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAF 604

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           ++IS    REI+VRD  RFHHF  GSCSC DY
Sbjct: 605 RYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/570 (38%), Positives = 330/570 (57%), Gaps = 36/570 (6%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV-SNISP 104
           +++L    G +  A   F  +   D   +N++I   ++  +   +L  + +M+  S +SP
Sbjct: 218 MIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSP 277

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK-- 162
             +T ++V+ +CA+L  L +G  +H H+  +G+D    V  AL++ Y++   V+ AR+  
Sbjct: 278 DRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLI 337

Query: 163 -------------------------------VFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
                                          +FD + D+ VVAW +MI GYEQ+G   EA
Sbjct: 338 EQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEA 397

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           I LF  M      P+S T   +L+  + L  +  G+ +H   V  G   +V ++ +LI M
Sbjct: 398 INLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITM 457

Query: 252 YARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           YA+ G+++ A   FD++  E + ++WT+MI     HG+  EA+ELF  M   G+RP+++T
Sbjct: 458 YAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHIT 517

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           +V V SAC HAGLV +G + F  M+    ++P + H+ CMVDLFGRAGLL EA +F++ +
Sbjct: 518 YVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM 577

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
             E P    W ++L AC+++KN DLG   AE LL +EPEN G Y  L+N+Y+  G+ +  
Sbjct: 578 PIE-PDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEA 636

Query: 431 EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
             +R  M    +KK  G+S +EV  K + F + D  HP  NEIY  + ++    ++ GYV
Sbjct: 637 AKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYV 696

Query: 491 PESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFI 550
           P++ S +H+LEEE +E  LR+HSEKLA+AFGL+ T    T+RI+KNLR+C DCH+AIKFI
Sbjct: 697 PDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFI 756

Query: 551 SVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S    REIIVRD  RFHHFK G CSC DYW
Sbjct: 757 SKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 129/485 (26%), Positives = 212/485 (43%), Gaps = 99/485 (20%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           Q VH  +I +G   S  ++  L+++    G+  +A+++F  +P   +F +NT++   +K 
Sbjct: 34  QLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKR 93

Query: 85  NFSTDSLLFYRR-------------------------------MIVSNISPSNYTFSAVI 113
                S  F+ R                               M+   I PS +T + V+
Sbjct: 94  GDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVL 153

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
            S A    L  G+ VH  +   G   ++ V  +L+N YAK  +  +A+ VFDRM  K + 
Sbjct: 154 ASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDIS 213

Query: 174 AW-------------------------------NSMISGYEQNGFAKEAIGLFN-LMRDF 201
           +W                               NSMISGY Q G+   A+ +F+ ++RD 
Sbjct: 214 SWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDS 273

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
            ++PD  T   VL+ACA L  + +G  +H  IV  G D++ ++  +LI+MY+RCG V  A
Sbjct: 274 MLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETA 333

Query: 262 RE---------------------------------IFDMMSELNVIAWTAMISGYGMHGY 288
           R                                  IFD + + +V+AWTAMI GY  HG 
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGL 393

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             EA+ LF  M     RPN+ T  A+LS  +    +  G ++  S  +  G +  V    
Sbjct: 394 YGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKS-GEIYSVSVSN 452

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
            ++ ++ +AG +  A +   D+I  +     WT+M+ A   H + +  +E+ E +L +E 
Sbjct: 453 ALITMYAKAGSITSASRAF-DLIRCERDTVSWTSMIIALAQHGHAEEALELFETML-MEG 510

Query: 409 ENPGH 413
             P H
Sbjct: 511 LRPDH 515



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 157/346 (45%), Gaps = 70/346 (20%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
            +++ YAK  ++D + + FDR+P +  V+W +MI GY+  G   +AI +   M   G+ P
Sbjct: 85  TVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEP 144

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
              T   VLA+ A    ++ G+ VH FIV  GL  NV ++ SL+NMYA+CG+   A+ +F
Sbjct: 145 SQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVF 204

Query: 266 D-------------------------------MMSELNVIAWTAMISGYGMHGYGTEAVE 294
           D                                M+E +++ W +MISGY   GY   A++
Sbjct: 205 DRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALD 264

Query: 295 LFHRM-RAHGVRPNNVTFVAVLSACA-----------HAGLVQEGHR----VFASMRQEY 338
           +F +M R   + P+  T  +VLSACA           H+ +V  G      V  ++   Y
Sbjct: 265 MFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMY 324

Query: 339 GLLPGVEH-----------------HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
               GVE                     ++D + + G +NEA K + D + ++   A WT
Sbjct: 325 SRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEA-KNIFDSLKDRDVVA-WT 382

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV---MLSNIYALA 424
           AM+   + H  +   + +   ++  E + P  Y    MLS   +LA
Sbjct: 383 AMIVGYEQHGLYGEAINLFRSMVG-EEQRPNSYTLAAMLSVASSLA 427



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 146/320 (45%), Gaps = 47/320 (14%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR- 61
           P      ++L A   L+ L   +Q+H+H++  G+  S  +L  L+S+    G +  A+R 
Sbjct: 277 PDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRL 336

Query: 62  --------------------------------IFFCIPSPDSFLFNTLIIRNSKANFSTD 89
                                           IF  +   D   +  +I+   +     +
Sbjct: 337 IEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGE 396

Query: 90  SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
           ++  +R M+     P++YT +A++   + L+ L  G+ +H     SG    + V  AL+ 
Sbjct: 397 AINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALIT 456

Query: 150 FYAKSNNVDVARKVFDRMP-DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
            YAK+ ++  A + FD +  ++  V+W SMI    Q+G A+EA+ LF  M   G+ PD  
Sbjct: 457 MYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHI 516

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT-----SLINMYARCGNVSKARE 263
           T V V +AC   G ++ GR   + +     DV+ ++ T      +++++ R G + +A+E
Sbjct: 517 TYVGVFSACTHAGLVNQGRQYFDMMK----DVDKIIPTLSHYACMVDLFGRAGLLQEAQE 572

Query: 264 IFDMMS-ELNVIAWTAMISG 282
             + M  E +V+ W +++S 
Sbjct: 573 FIEKMPIEPDVVTWGSLLSA 592


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/579 (38%), Positives = 346/579 (59%), Gaps = 4/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P++  + ++LKA   L+     + VH       Y     +  +L+ L   +G +  A +
Sbjct: 243 KPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQ 302

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  D   ++ +I R +++  S +++  + RM    + P+ +T ++++++CA L  
Sbjct: 303 VFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVD 362

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L LG  +HCHV   G D ++ V  AL++ YAK   ++ + ++F   P+ + V+WN++I G
Sbjct: 363 LQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVG 422

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q G  ++A+ LF  M +  V     T   VL ACA +  ++ G  +H   V    D N
Sbjct: 423 YVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKN 482

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            V+  +LI+MYA+CGN+  AR +FDM+ E + ++W AMISGY +HG   EA++ F  M  
Sbjct: 483 TVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLE 542

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
              +P+ VTFV +LSAC++AGL+  G   F SM +EY + P  EH+ CMV L GR+G L+
Sbjct: 543 TECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLD 602

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           +A K V ++  E P+  VW A+L AC +H + +LG   A+ +L +EPE+   +V+LSNIY
Sbjct: 603 KAAKLVHEIPFE-PSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIY 661

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A A R   V  +R  M +KG++K  G S +E   + + FS+GD SHP+T  I   L+ L 
Sbjct: 662 ANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWLN 721

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            + R  GYVP+  S + ++E+ ++E  L  HSE+LALA+GL+RT     +RI+KNLR+C 
Sbjct: 722 MKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSISPLRIIKNLRICA 781

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+AIK IS    R+II+RD  RFHHF  G CSC DYW
Sbjct: 782 DCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 219/416 (52%), Gaps = 6/416 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VHA +   G+     + T L+      G+   A+++F  I   D   +  ++    +   
Sbjct: 167 VHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENEC 226

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             +SL  + RM +    P+N+TF++V+K+C  L + N+G+AVH   F + Y  +L V   
Sbjct: 227 FEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVE 286

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ Y KS +VD A +VF+ MP   V+ W+ MI+ Y Q+  ++EAI +F  MR   V P+
Sbjct: 287 LIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPN 346

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T   +L ACA L D+ LG  +H  +V  GLD+NV ++ +L++MYA+CG +  + ++F 
Sbjct: 347 QFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFS 406

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
                  ++W  +I GY   G G +A+ LF  M    V+   VT+ +VL ACA    ++ 
Sbjct: 407 ESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEP 466

Query: 327 GHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           G ++ + S++  Y     V +   ++D++ + G + +A + V D++ E    + W AM+ 
Sbjct: 467 GSQIHSLSVKTIYDKNTVVGN--ALIDMYAKCGNIKDA-RLVFDMLREHDQVS-WNAMIS 522

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
              +H  +   ++  E +L  E + +   +V + +  + AG +DR +     M+++
Sbjct: 523 GYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEE 578



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 157/294 (53%), Gaps = 15/294 (5%)

Query: 99  VSNISP--SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
            S+ SP  + Y + ++++SC        G+ +HC +   G   DL     L+NFY K ++
Sbjct: 35  TSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDS 94

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG--VNPDSTTCVCVL 214
           +  A K+FD MPD++ V++ ++I GY Q     EAIGLF+ ++  G  +NP   + V  L
Sbjct: 95  LPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKL 154

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
              A+     LG  VH  +   G D +  + T+LI+ Y+ CG    AR++FD +   +++
Sbjct: 155 LVSAEWA--KLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMV 212

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-S 333
           +WT M++ Y  +    E+++LF RMR  G +PNN TF +VL AC    +   G  V   +
Sbjct: 213 SWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCA 272

Query: 334 MRQEY--GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            +  Y   L  GVE    ++DL+ ++G +++A +  +++  +   P  W+ M+ 
Sbjct: 273 FKTSYLEELFVGVE----LIDLYIKSGDVDDALQVFEEMPKDDVIP--WSFMIA 320



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 159/311 (51%), Gaps = 1/311 (0%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A ++F  +P  ++  F TLI   S+    ++++  + R+       + + FS V+K    
Sbjct: 98  AAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVS 157

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
                LG +VH  V+  G+DSD  V  AL++ Y+     + AR+VFD +  K +V+W  M
Sbjct: 158 AEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGM 217

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           ++ Y +N   +E++ LF+ MR  G  P++ T   VL AC  L   ++G+ VH        
Sbjct: 218 VACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSY 277

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
              + +   LI++Y + G+V  A ++F+ M + +VI W+ MI+ Y       EA+E+F R
Sbjct: 278 LEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCR 337

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           MR   V PN  T  ++L ACA    +Q G+++   + +  GL   V     ++D++ + G
Sbjct: 338 MRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVK-VGLDMNVFVSNALMDMYAKCG 396

Query: 359 LLNEAYKFVKD 369
            +  + +   +
Sbjct: 397 RMENSLQLFSE 407


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/564 (37%), Positives = 330/564 (58%), Gaps = 40/564 (7%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+ +F  +      ++N +I    ++    D+   +RRM+   +    +TF++V+
Sbjct: 248 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 307

Query: 114 KSCAHLSILNLGRAVHCHV------FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
            +CA+      G++VH  +      FV   ++ L V  ALV  Y+K   + +A+++FD M
Sbjct: 308 SACANAGFFVHGKSVHGQIIRLQPNFVP--EAALPVNNALVTLYSKGGKIVIAKRIFDTM 365

Query: 168 PDKSVVAWNS-------------------------------MISGYEQNGFAKEAIGLFN 196
             K VV+WN+                               M+SGY   G +++A+ LFN
Sbjct: 366 NLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFN 425

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            MR   V P   T    +AAC +LG +  GR +H  +V  G + +     +L+ MYA+CG
Sbjct: 426 QMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCG 485

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
            V+ AR +F +M  L+ ++W AMIS  G HG+G EA+ELF +M A G+ P+ ++F+ +L+
Sbjct: 486 AVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILT 545

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC HAGLV EG   F SM++++G+ PG +H+  ++DL GR+G + EA   +K +  E P 
Sbjct: 546 ACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFE-PT 604

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
           P++W A+L  C+ + + + G   A+ L  + P++ G Y++LSN Y+ AGR      VR +
Sbjct: 605 PSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKL 664

Query: 437 MIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESA 496
           M  +G+KK  G S +EV  K ++F +GD  HP   E+YQ+L+ +  R R+ GYVP+++  
Sbjct: 665 MRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFV 724

Query: 497 MHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNR 556
           +H++E  E+EY L  HSEKLA+ FGL++  PG T+ ++KNLR+C DCH+A+ F+S A  R
Sbjct: 725 LHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGR 784

Query: 557 EIIVRDRLRFHHFKRGSCSCLDYW 580
           EI+VRD  RFHHFK G CSC +YW
Sbjct: 785 EIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 196/451 (43%), Gaps = 79/451 (17%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSP--DSFLFNTLIIRNSKANFSTDSLLFYRRMIVS- 100
           T L++    AG +  A   F  +P    D+ L N ++   ++A+ +  ++  +  ++ S 
Sbjct: 98  TSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 157

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRA--VHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158
           ++ P +Y+F+A+I +   +  L       +HC V  SG  + L V  AL+  Y K +  +
Sbjct: 158 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 217

Query: 159 V---ARKVFDRMPDKSV-------------------------------VAWNSMISGYEQ 184
               ARKV D MPDK                                 V WN+MISGY Q
Sbjct: 218 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 277

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH--------EFIVGQ 236
           +G   +A  LF  M    V  D  T   VL+ACA  G    G+ VH         F+   
Sbjct: 278 SGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEA 337

Query: 237 GLDVNVVLAT---------------------------SLINMYARCGNVSKAREIFDMMS 269
            L VN  L T                           ++++ Y   G + KA E+F +M 
Sbjct: 338 ALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMP 397

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             N ++W  M+SGY   G   +A++LF++MRA  V+P + T+   ++AC   G ++ G +
Sbjct: 398 YKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQ 457

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
           + A + Q  G          ++ ++ + G +N+A + V  V+    +   W AM+ A   
Sbjct: 458 LHAHLVQ-CGFEASNSAGNALLTMYAKCGAVNDA-RLVFLVMPNLDS-VSWNAMISALGQ 514

Query: 390 HKNFDLGVEVAEHLLS--VEPENPGHYVMLS 418
           H +    +E+ + +++  ++P+      +L+
Sbjct: 515 HGHGREALELFDQMVAEGIDPDRISFLTILT 545



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 144/300 (48%), Gaps = 17/300 (5%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           +LS   D+G +  A  +F  +P  +   +  ++        S D+L  + +M   ++ P 
Sbjct: 376 ILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPC 435

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           +YT++  I +C  L  L  GR +H H+   G+++      AL+  YAK   V+ AR VF 
Sbjct: 436 DYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFL 495

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP+   V+WN+MIS   Q+G  +EA+ LF+ M   G++PD  + + +L AC   G +D 
Sbjct: 496 VMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDE 555

Query: 226 G-----RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAM 279
           G         +F +  G D        LI++  R G + +AR++   M  E     W A+
Sbjct: 556 GFHYFESMKRDFGISPGEDHY----ARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAI 611

Query: 280 ISGYGMHG---YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           +SG   +G   +G  A +   RM    +  ++ T++ + +  + AG   +  RV   MR 
Sbjct: 612 LSGCRTNGDMEFGAYAADQLFRM----IPQHDGTYILLSNTYSAAGRWVDAARVRKLMRD 667



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 10/172 (5%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  +Q+HAHL+  G+  S S    LL++    G +  A+ +F  +P+ DS  +N +I  
Sbjct: 452 LKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISA 511

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS----- 135
             +     ++L  + +M+   I P   +F  ++ +C H  +++ G     H F S     
Sbjct: 512 LGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEG----FHYFESMKRDF 567

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMISGYEQNG 186
           G        A L++   +S  +  AR +   MP + +   W +++SG   NG
Sbjct: 568 GISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNG 619



 Score = 42.0 bits (97), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMM--SELNVIAWTAMISGYGMHGYGTEAVELF 296
           D   V ATSL+  +A  G +  A   FD +  +  + +   AM+S +        AV +F
Sbjct: 91  DPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVF 150

Query: 297 HRMRAHG-VRPNNVTFVAVLSA 317
           H +   G +RP++ +F A++SA
Sbjct: 151 HALLGSGSLRPDDYSFTALISA 172


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/582 (40%), Positives = 342/582 (58%), Gaps = 26/582 (4%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSML---TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTL 77
           +  L+Q+HA  +   Y    + L    K+L L      + YA R+F  I +  SF++NTL
Sbjct: 52  MSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTL 111

Query: 78  IIRNSKANFS--TDSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           I R    + S   ++ + YR+M+     SP  +TF  V+K+CA++   + G+ VHC +  
Sbjct: 112 I-RACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK 170

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
            G+  D++V   L++ Y     +D+ARKVFD MP++S+V+WNSMI    + G    A+ L
Sbjct: 171 HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQL 230

Query: 195 FNLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDV--NVVLATSLIN 250
           F  M R F   PD  T   VL+ACA LG + LG W H F++ +  +DV  +V++  SLI 
Sbjct: 231 FREMQRSF--EPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIE 288

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM--RAHGVRPNN 308
           MY +CG++  A ++F  M + ++ +W AMI G+  HG   EA+  F RM  +   VRPN+
Sbjct: 289 MYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNS 348

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           VTFV +L AC H G V +G + F  M ++Y + P +EH+ C+VDL  RAG + EA   V 
Sbjct: 349 VTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVM 408

Query: 369 DVIGEKPAPAVWTAMLGAC-KMHKNFDLGVEVAEHLLSVEPEN-------PGHYVMLSNI 420
             +  KP   +W ++L AC K   + +L  E+A +++  + +N        G YV+LS +
Sbjct: 409 S-MPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRV 467

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA A R + V +VR +M + G++K  G S++E++  ++ F  GD SHP T +IYQ L  +
Sbjct: 468 YASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVI 527

Query: 481 MGRCREAGYVPESESA--MHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
             R R  GY+P+   A  +    +  +EYSLR HSE+LA+AFGL+   P   IRI KNLR
Sbjct: 528 DDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLR 587

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH   K IS   N EIIVRDR+RFHHFK GSCSCLDYW
Sbjct: 588 VCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 629


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/563 (38%), Positives = 345/563 (61%), Gaps = 8/563 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPDSFLFNTLIIRNS 82
           +Q HA L+      +    +KL+S +    +G + YA+++F  + +PD F+ NT+I   +
Sbjct: 28  KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
           ++    +++  Y  M+   +   NYT+  V+ +CA L  + LGR  HC V  +G+ SDL 
Sbjct: 88  RSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLF 147

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF- 201
           V  AL+ FY    +   A  VFD    + VV WN MI+ +   G +++A  L + M    
Sbjct: 148 VINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLD 207

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEF---IVGQGLDVNVVLATSLINMYARCGNV 258
            + PD  T V ++ ACAQLG+++ G+++H +   +    ++ ++VL T+L++MYA+CG++
Sbjct: 208 NLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSI 267

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
             A ++F  M   NV  W A+I G  MHG+G +A+ LF +M    + P++VTF+A+L AC
Sbjct: 268 DLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCAC 327

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           +HAGLV EG  +F +M+ ++ + P +EH+ C+VDL  RA  +++A  F+++ +  K    
Sbjct: 328 SHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIEN-MPIKANSV 386

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
           +W  +LGAC+   +FDL  ++   ++ +EP++ G YVMLSN+YA   + D    +R  M 
Sbjct: 387 LWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMK 446

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR-EAGYVPESESAM 497
            KG++K  G S +E++   + F  GD+SH  T +IY  ++E+  R   + G+VP + + +
Sbjct: 447 NKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVL 506

Query: 498 HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNRE 557
            ++EEEE+E+SL  HSEKLA+A GL+ T  G  IRIVKNLR+C DCHS +K  S   NRE
Sbjct: 507 FDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNRE 566

Query: 558 IIVRDRLRFHHFKRGSCSCLDYW 580
           I+ RDR RFHHFK GSCSC+D+W
Sbjct: 567 IVARDRSRFHHFKEGSCSCMDFW 589


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/607 (35%), Positives = 358/607 (58%), Gaps = 37/607 (6%)

Query: 10  AYEAILKAGPRLKPL--QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           + ++ L +  R  PL  +++HA +I AG  +   +   LL+     G I  A ++F  +P
Sbjct: 6   SLQSQLCSAARQSPLLAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALP 65

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL--G 125
             D   + +L+   + +N    +L   R ++ +   P ++ F++++K+CA+L +L++  G
Sbjct: 66  RRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQG 125

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           + VH   F+S +  D  V+++L++ YAK    D  R VFD +   + ++W +MISGY ++
Sbjct: 126 KQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARS 185

Query: 186 GFAKEAIGLF------NL-------------------------MRDFGVN-PDSTTCVCV 213
           G   EA  LF      NL                         MR  G++  D      V
Sbjct: 186 GRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSV 245

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           + ACA L   +LG+ +H  ++  G +  + ++ +LI+MYA+C ++  A+ IF  M   +V
Sbjct: 246 VGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDV 305

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
           ++WT++I G   HG   EA+ L+  M   GV+PN VTFV ++ AC+HAGLV +G  +F +
Sbjct: 306 VSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRT 365

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
           M +++G+ P ++H+ C++DLF R+G L+EA   ++  +   P    W A+L +CK H N 
Sbjct: 366 MVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIR-TMPVNPDEPTWAALLSSCKRHGNT 424

Query: 394 DLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEV 453
            + V +A+HLL+++PE+P  Y++LSNIYA AG  + V  VR +M+    KK  GYS +++
Sbjct: 425 QMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDL 484

Query: 454 DQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHS 513
            + +++F  G+ SHP  +EI   + EL    R+ GY P++ S +H+++++E+E  L +HS
Sbjct: 485 GKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHS 544

Query: 514 EKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGS 573
           E+LA+A+GL++  PG  IRIVKNLR+C DCH+ +K IS  TNREI VRD  R+HHFK G+
Sbjct: 545 ERLAVAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGN 604

Query: 574 CSCLDYW 580
           CSC D+W
Sbjct: 605 CSCNDFW 611


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/531 (40%), Positives = 326/531 (61%), Gaps = 4/531 (0%)

Query: 53  AGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAV 112
           +G I  + ++F   P  D+  +NT+I    ++  + D+L   RRM  + +  ++YT+S  
Sbjct: 191 SGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTA 250

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR---MPD 169
                 L + +LGR +H  V ++  + D  V+++L++ Y K   ++ A  VFD    +  
Sbjct: 251 FVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTR 310

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
               AW++M++GY QNG  +EA+ LF  M   GV  D  T   V AACA +G ++ GR V
Sbjct: 311 DMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQV 370

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           H  +      ++  LA+++++MYA+CGN+  AR IFD     N+  WT+M+  Y  HG G
Sbjct: 371 HGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQG 430

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
             A+ELF RM A  + PN +T V VLSAC+H GLV EG   F  M++EYG++P +EH+ C
Sbjct: 431 RIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNC 490

Query: 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
           +VDL+GR+GLL++A  F+++      A  VW  +L AC++H++ +     +E L+ +E  
Sbjct: 491 IVDLYGRSGLLDKAKNFIEENNINHEA-IVWKTLLSACRLHQHNEYAKLASEKLVQLEQC 549

Query: 410 NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPN 469
           + G YVMLSNIYA   +      +R  M ++ ++K  G S + +    + F  GD SHP 
Sbjct: 550 DAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQ 609

Query: 470 TNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGM 529
           + EIY YL++L+ R +E GY   ++  +H++E+E+RE +L++HSEKLA+AFG++ T  G 
Sbjct: 610 SAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGT 669

Query: 530 TIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            +RI KNLR+C DCH AIK+IS+AT REI+VRD  RFHHFK  SCSC D+W
Sbjct: 670 PLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 180/399 (45%), Gaps = 39/399 (9%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCA 117
           A+ +F   P+  + ++   I   ++     D +  +  M+     +P+ +  +AV++ CA
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF------------- 164
            +  +  G+ VH  +  +G   D+ +  A+++ YAK    + AR+VF             
Sbjct: 124 GMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNI 183

Query: 165 ------------------DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
                             D  P +   +WN++ISG  ++G A +A+     M   GV  +
Sbjct: 184 AIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFN 243

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T          L   DLGR +H  ++   L+ +  + +SL++MY +CG +  A  +FD
Sbjct: 244 HYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFD 303

Query: 267 MMSELNV---IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
             S L      AW+ M++GY  +G   EA++LF RM   GV  +  T  +V +ACA+ G+
Sbjct: 304 HWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGM 363

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           V++G +V   + + +  L        +VD++ + G L +A         +    AVWT+M
Sbjct: 364 VEQGRQVHGCVEKLWYKLDAPLASA-IVDMYAKCGNLEDARSIFDRACTKN--IAVWTSM 420

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           L +   H    + +E+ E  ++ E   P    ++  + A
Sbjct: 421 LCSYASHGQGRIAIELFER-MTAEKMTPNEITLVGVLSA 458



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 1/156 (0%)

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
           H +A+++ F+ +      AR VFD  P ++   W   ISG  + G   + +  F  M   
Sbjct: 46  HERASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAE 105

Query: 202 G-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
           G   P++     V+  CA +GD++ G+ VH +++  G+ ++VVL  ++++MYA+CG   +
Sbjct: 106 GEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFER 165

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
           AR +F  M+E + ++W   I      G    +++LF
Sbjct: 166 ARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLF 201


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/540 (40%), Positives = 335/540 (62%), Gaps = 6/540 (1%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI- 102
           T LL +    G + YA+R+F  +P+ +   ++ LI      +  T + L ++ M+   + 
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 221

Query: 103 --SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
             SP+  + ++ +++CA L  L +G  +H  +  SG  +DL    +L++ YAK+  +D A
Sbjct: 222 FLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 279

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
             +FD M  K  V++++++SGY QNG A+EA  +F  M+   V PD+ T V ++ AC+ L
Sbjct: 280 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 339

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             +  GR  H  ++ +GL     +  +LI+MYA+CG +  +R++F+MM   ++++W  MI
Sbjct: 340 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 399

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GYG+HG G EA  LF  M   G  P+ VTF+ +LSAC+H+GLV EG   F  M   YGL
Sbjct: 400 AGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGL 459

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P +EH++CMVDL  R G L+EAY+F++  +  +    VW A+LGAC+++KN DLG +V+
Sbjct: 460 TPRMEHYICMVDLLSRGGFLDEAYEFIQS-MPLRADVRVWVALLGACRVYKNIDLGKKVS 518

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
             +  + PE  G++V+LSNIY+ AGR D    VR I   +G KK  G S +E++   + F
Sbjct: 519 RMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAF 578

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
             GD+SHP + EIY+ LD ++   ++ GY P++   + +LEEEE+E +L  HSEKLA+A+
Sbjct: 579 VGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAY 638

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           G++  S   TI + KNLR+C DCH+ IK IS+   R IIVRD  RFHHFK G CSC D+W
Sbjct: 639 GILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 157/293 (53%), Gaps = 19/293 (6%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M+   ++P+NYTF   +K+C+ L+  + GRA+H H   +G  +DL V  AL++ Y K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG--LFNLMRDFGVNPDSTTCVCVL 214
           +  A  +F  MP + +VAWN+M++GY  +G    A+   L   M+   + P+++T V +L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVN----------VVLATSLINMYARCGNVSKAREI 264
              AQ G +  G  VH + +   L  N          V+L T+L++MYA+CG++  AR +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA-VLSACAHAGL 323
           FD M   N + W+A+I G+ +    T+A  LF  M A G+   + T +A  L ACA    
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVI 371
           ++ G ++ A + +  G+   +     ++ ++ +AGL+++A        VKD +
Sbjct: 241 LRMGEQLHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTV 292


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/528 (39%), Positives = 337/528 (63%), Gaps = 2/528 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN-FSTDSLLFYRRMIVSNISPSNYTFSAV 112
           G +  A+++F  +P  +   +  +I    ++     +++  +  M+   + P+++TFS+V
Sbjct: 197 GSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSV 256

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           +K+CA+LS + LG  V+  V      S   V  +L++ Y++  N++ ARK FD + +K++
Sbjct: 257 LKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNL 316

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           V++N++++ Y ++  ++EA  LFN +   G   ++ T   +L+  + +G I  G  +H  
Sbjct: 317 VSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSR 376

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           I+  G   N+ +  +LI+MY+RCGN+  A ++F+ M + NVI+WT+MI+G+  HG+ T A
Sbjct: 377 ILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRA 436

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           +E FH+M   GV PN VT++AVLSAC+H GL+ EG + F SM+ E+G++P +EH+ C+VD
Sbjct: 437 LETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVD 496

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L GR+G L EA + V  +  +  A  + T  LGAC++H N DLG   AE +L  +P +P 
Sbjct: 497 LLGRSGHLEEAMELVNSMPFKADALVLRT-FLGACRVHGNMDLGKHAAEMILEQDPHDPA 555

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
            Y++LSN++A AG+ + V  +R  M ++ L K  G S +EV+ K + F +GD SHP   E
Sbjct: 556 AYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQE 615

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           IY  LD+L  + +E GY+P ++  +H++EEE++E  L  HSEK+A+A+G + TS    IR
Sbjct: 616 IYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTSRPIR 675

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           + KNLR+C DCH+A K+ S+   +EI++RD  RFHHFK G+CSC DYW
Sbjct: 676 VFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 200/373 (53%), Gaps = 13/373 (3%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A ++F  +P  +   +  +I R  +  FS D++  +  M++S   P  +T S V+
Sbjct: 93  GDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVV 152

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK---SNNVDVARKVFDRMPDK 170
            +CA + +L+LGR  HC V  SG D D+ V  +LV+ YAK     +VD ARKVFDRMP  
Sbjct: 153 SACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVH 212

Query: 171 SVVAWNSMISGYEQNGFA-KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           +V++W ++I+GY Q+G   +EAI LF  M    V P+  T   VL ACA L DI LG  V
Sbjct: 213 NVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQV 272

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           +  +V   L     +  SLI+MY+RCGN+  AR+ FD++ E N++++  +++ Y      
Sbjct: 273 YALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNS 332

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
            EA ELF+ +   G   N  TF ++LS  +  G + +G ++ + + +  G    +  H+C
Sbjct: 333 EEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS-GFKSNL--HIC 389

Query: 350 --MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS-- 405
             ++ ++ R G +  A++ V + +G+    + WT+M+     H      +E    +L   
Sbjct: 390 NALISMYSRCGNIEAAFQ-VFNEMGDGNVIS-WTSMITGFAKHGFATRALETFHKMLEAG 447

Query: 406 VEPENPGHYVMLS 418
           V P    +  +LS
Sbjct: 448 VSPNEVTYIAVLS 460



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/258 (38%), Positives = 160/258 (62%), Gaps = 8/258 (3%)

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY-DS 139
           N++  F   S  F   M+     P+ Y F+ V ++C++   ++LG+ +   +  +GY +S
Sbjct: 19  NNEKAFEAISAFF--DMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFES 76

Query: 140 DLHVQAALVNFYAKSN-NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
           D+ V  AL++ + K N +++ A KVFDRMPD++VV W  MI+ ++Q GF+++A+ LF  M
Sbjct: 77  DVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDM 136

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC--- 255
              G  PD  T   V++ACA++G + LGR  H  ++  GLD++V +  SL++MYA+C   
Sbjct: 137 VLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVAD 196

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMH-GYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           G+V  AR++FD M   NV++WTA+I+GY    G   EA+ELF  M    V+PN+ TF +V
Sbjct: 197 GSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSV 256

Query: 315 LSACAHAGLVQEGHRVFA 332
           L ACA+   +  G +V+A
Sbjct: 257 LKACANLSDIWLGEQVYA 274



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 169/340 (49%), Gaps = 12/340 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   + ++LKA   L  +   +QV+A ++         +   L+S+    G +  A++
Sbjct: 247 KPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARK 306

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            F  +   +   +NT++   +K+  S ++   +  +  +    + +TF++++   + +  
Sbjct: 307 AFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGA 366

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           +  G  +H  +  SG+ S+LH+  AL++ Y++  N++ A +VF+ M D +V++W SMI+G
Sbjct: 367 IGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITG 426

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDV 240
           + ++GFA  A+  F+ M + GV+P+  T + VL+AC+ +G I  G +      V  G+  
Sbjct: 427 FAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVP 486

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHG---YGTEAVELF 296
            +     ++++  R G++ +A E+ + M  + + +     +    +HG    G  A E+ 
Sbjct: 487 RMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMI 546

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
                H    +   ++ + +  A AG  +E   +   M++
Sbjct: 547 LEQDPH----DPAAYILLSNLHASAGQWEEVAEIRKKMKE 582



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 134/272 (49%), Gaps = 24/272 (8%)

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           + +V+W+++IS Y  N  A EAI  F  M + G  P+      V  AC+   +I LG+ +
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 230 HEFIVGQG-LDVNVVLATSLINMYARC-GNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
             F++  G  + +V +  +LI+M+ +  G++  A ++FD M + NV+ WT MI+ +   G
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
           +  +AV+LF  M   G  P+  T   V+SACA  GL+  G R F  +  + GL   V   
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLG-RQFHCLVMKSGLDLDVCVG 183

Query: 348 VCMVDLFGRA---GLLNEAYKFVKDVIGEKPAPAV--WTAML------GACKMHKNFDLG 396
             +VD++ +    G +++A K    V    P   V  WTA++      G C   +  +L 
Sbjct: 184 CSLVDMYAKCVADGSVDDARK----VFDRMPVHNVMSWTAIITGYVQSGGCD-REAIELF 238

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
           +E+ +  +      P H+   S + A A   D
Sbjct: 239 LEMVQGQV-----KPNHFTFSSVLKACANLSD 265



 Score = 45.1 bits (105), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
           M ++ ++++W+A+IS Y  +    EA+  F  M   G  PN   F  V  AC++   +  
Sbjct: 1   MGNKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISL 60

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRA-GLLNEAYKFVKDVIGEKPAPAVWTAML 384
           G  +F  + +       V     ++D+F +  G L  AYK V D + ++     WT M+
Sbjct: 61  GKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYK-VFDRMPDRNV-VTWTLMI 117


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/562 (37%), Positives = 336/562 (59%), Gaps = 26/562 (4%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           R+    ++  ++++ GY ++              G ++ A+R+F  +P  D F +  ++ 
Sbjct: 240 RMPVRDKISWNIMITGYAQN--------------GLLSEARRLFEELPIRDVFAWTAMV- 284

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSN-YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
               + F  + +L     I   +   N  +++A+I        +   R     +F     
Sbjct: 285 ----SGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKAR----ELFDQMPS 336

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
            +      +V  YA+  N+D A+ +FD MP +  ++W +MISGY Q+G ++EA+ LF  M
Sbjct: 337 RNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
           +  G   + +   C L++CA++  ++LG+ +H  +V  G     +   +L+ MY +CG++
Sbjct: 397 KRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSI 456

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
            +A ++F+ ++E ++++W  MI+GY  HG+G EA+ LF  M+   ++P++VT V VLSAC
Sbjct: 457 EEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSAC 515

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           +H G V +G   F SM Q YG+    +H+ CM+DL GRAG L+EA   +K  +   P  A
Sbjct: 516 SHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKS-MPFYPDAA 574

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
            W A+LGA ++H + +LG + AE +  +EP+N G YV+LSN+YA +GR   V  +R+ M 
Sbjct: 575 TWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMR 634

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
            KG+KK  GYS VE+  K ++F++GD SHP    IY YL+EL    ++ G+V  ++  +H
Sbjct: 635 DKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLH 694

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
           ++EEEE+E+ L+YHSEKLA+AFG++   PG  IR++KNLR+C DCH+AIK IS  T R+I
Sbjct: 695 DVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQI 754

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           IVRD  RFHHF  GSCSC DYW
Sbjct: 755 IVRDSNRFHHFSEGSCSCGDYW 776



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 16/233 (6%)

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           S  T++A+I      +  +  R     VF    D DL     +++ Y K+ N+  AR +F
Sbjct: 90  STVTYNAMISGYLSNNKFDCAR----KVFEKMPDRDLISWNVMLSGYVKNGNLSAARALF 145

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           ++MP+K VV+WN+M+SG+ QNGF +EA  +F+ M    +  +  +   +L+A  Q G I+
Sbjct: 146 NQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIE 201

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
             R     +    +D  +V    L+  Y R   +  AR +FD M   + I+W  MI+GY 
Sbjct: 202 DAR----RLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYA 257

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
            +G  +EA  LF  +    V      + A++S     G++ E  R+F  M ++
Sbjct: 258 QNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEMPEK 306



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 138/334 (41%), Gaps = 53/334 (15%)

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN------------ 185
           DSD+      ++ Y +    + A  VF+ M  +S V +N+MISGY  N            
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 186 --------------GFAKE-----AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
                         G+ K      A  LFN M +     D  +   +L+  AQ G ++  
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPE----KDVVSWNAMLSGFAQNGFVEEA 172

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
           R     I  Q L  N +    L++ Y + G +  AR +FD   +  +++W  ++ GY   
Sbjct: 173 R----KIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRK 228

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
               +A  LF RM       + +++  +++  A  GL+ E  R+F  +      +  V  
Sbjct: 229 KRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEELP-----IRDVFA 279

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406
              MV  F + G+L+EA +  +++   +     W AM+      +  +   E+ + + S 
Sbjct: 280 WTAMVSGFVQNGMLDEATRIFEEM--PEKNEVSWNAMIAGYVQSQQIEKARELFDQMPS- 336

Query: 407 EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
              N   +  +   YA  G +D+ +++ + M Q+
Sbjct: 337 --RNTSSWNTMVTGYAQCGNIDQAKILFDEMPQR 368


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/636 (35%), Positives = 349/636 (54%), Gaps = 73/636 (11%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           ++ A   L  L Q+HA + +     +  ++T+L+S  C    + YA  IF C   P+ F+
Sbjct: 46  LIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFV 105

Query: 74  FNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
           FN LI     NS+   S    +   R+   +I P   T   V+KS A L  + LGR +H 
Sbjct: 106 FNALIRGLAENSRFEGSVSHFVLMLRL---SIRPDRLTLPFVLKSVAALVDVGLGRCLHG 162

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR------------------------ 166
            V   G + D  V+ +LV+ Y K   +    ++FD                         
Sbjct: 163 GVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVG 222

Query: 167 -----------MPDKSVVAWNSMISGY-------------------------------EQ 184
                      MP+++  +WNS+I+G+                                Q
Sbjct: 223 DLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQ 282

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           NG  ++A+ +F  M + GV P+  T V  L AC ++G + +G  +H ++   G  +N  +
Sbjct: 283 NGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGI 342

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
            T+L++MYA+CGN+  A  +F      +++ W+ MI G+ +HG   +A++ F +M++ G+
Sbjct: 343 GTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGI 402

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
            P+ V F+A+L+AC+H+G V +G   F SMR +Y + P ++H+  +VDL GRAG L+EA 
Sbjct: 403 NPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEAL 462

Query: 365 KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
            F++  +   P   +W A+  AC+ HKN ++    AE LL +EP++PG YV LSN+YA  
Sbjct: 463 SFIQS-MPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAV 521

Query: 425 GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRC 484
           GR + VE VR +M  +G++K  G+S +EV+ + + F  GD +H    EI   L+E+    
Sbjct: 522 GRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASA 581

Query: 485 REAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
           ++ GY+PE+   +H +EEEE+E +L  HSEKLALAFGL+ T+PG TIRIVKNLR+C DCH
Sbjct: 582 KQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCH 641

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S +K+ S  + REII+RD  RFHHFK G+CSC DYW
Sbjct: 642 SMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/577 (37%), Positives = 335/577 (58%), Gaps = 4/577 (0%)

Query: 7   HSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF 63
           H   +  +LKA  R    +    +H+ ++  G+    + +T LLS+   +G +  A ++F
Sbjct: 110 HGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLF 169

Query: 64  FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123
             IP      +  L    + +    +++  +++M+   + P +Y    V+ +C H+  L+
Sbjct: 170 DEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLD 229

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
            G  +  ++       +  V+  LVN YAK   ++ AR VFD M +K +V W++MI GY 
Sbjct: 230 SGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYA 289

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
            N F KE I LF  M    + PD  + V  L++CA LG +DLG W    I       N+ 
Sbjct: 290 SNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLF 349

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           +A +LI+MYA+CG +++  E+F  M E +++   A ISG   +G+   +  +F +    G
Sbjct: 350 MANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLG 409

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           + P+  TF+ +L  C HAGL+Q+G R F ++   Y L   VEH+ CMVDL+GRAG+L++A
Sbjct: 410 ISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDA 469

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
           Y+ + D +  +P   VW A+L  C++ K+  L   V + L+++EP N G+YV LSNIY++
Sbjct: 470 YRLICD-MPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSV 528

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
            GR D    VR++M +KG+KK  GYS +E++ K + F   DKSHP +++IY  L++L   
Sbjct: 529 GGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNE 588

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
            R  G+VP +E    ++EEEE+E  L YHSEKLA+A GL+ T  G  IR+VKNLR+C DC
Sbjct: 589 MRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDC 648

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           H  +K IS  T REI+VRD  RFH F  GSCSC DYW
Sbjct: 649 HEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 152/327 (46%), Gaps = 18/327 (5%)

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSN----NVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            + VS  +  LH    LVN   K          +  +F      ++  +NS+I+G+  N 
Sbjct: 31  QIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNH 90

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
              E + LF  +R  G+     T   VL AC +     LG  +H  +V  G + +V   T
Sbjct: 91  LFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMT 150

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           SL+++Y+  G ++ A ++FD + + +V+ WTA+ SGY   G   EA++LF +M   GV+P
Sbjct: 151 SLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKP 210

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           ++   V VLSAC H G +  G  +   M +E  +         +V+L+ + G + +A + 
Sbjct: 211 DSYFIVQVLSACVHVGDLDSGEWIVKYM-EEMEMQKNSFVRTTLVNLYAKCGKMEKA-RS 268

Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SVEPENPGHYVMLSNIYALA 424
           V D + EK     W+ M+     +     G+E+   +L  +++P+       LS+  +L 
Sbjct: 269 VFDSMVEKDI-VTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLG 327

Query: 425 G---------RMDRVEVVRNIMIQKGL 442
                      +DR E + N+ +   L
Sbjct: 328 ALDLGEWGISLIDRHEFLTNLFMANAL 354


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/561 (38%), Positives = 336/561 (59%), Gaps = 31/561 (5%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+HAHLI A   ++  + T+L+ +  + G + YA+ IF  +   +++ +N++I    + 
Sbjct: 298 RQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQN 357

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             + ++L  +++M ++ I P  ++ S+++ SC  LS    GR +H  +  +  + +  +Q
Sbjct: 358 GETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ 417

Query: 145 AALVNFYAKSNNVDVARKVFDRM--PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
             LV+ YAK  ++D A KV+D+    D++   WNS+++GY   G  KE+   F  M +  
Sbjct: 418 VVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESD 477

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           +  D  T V ++                           +VL T+L++MY++CG ++KAR
Sbjct: 478 IEYDVLTMVTIVNL-------------------------LVLETALVDMYSKCGAITKAR 512

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
            +FD M+  N+++W AMISGY  HG   EA+ L+  M   G+ PN VTF+A+LSAC+H G
Sbjct: 513 TVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTG 572

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           LV+EG R+F SM+++Y +    EH+ CMVDL GRAG L +A +FV+ +  E P  + W A
Sbjct: 573 LVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIE-PEVSTWGA 631

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LGAC++HK+ D+G   A+ L  ++P+NPG YV++SNIYA AGR   VE +R +M  KG+
Sbjct: 632 LLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGV 691

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
           KK  G S +E++ +  +F  G K+HP T EIY  L  L  + +  GY+P++   +  +++
Sbjct: 692 KKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKD 751

Query: 503 EEREYSLRY---HSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
            + E    Y   HSE+LAL+ GL+      TIR+ KNLR+C DCH+A KFIS  T R II
Sbjct: 752 IKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRII 811

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
            RD  RFHHF+ G CSC DYW
Sbjct: 812 ARDTNRFHHFENGKCSCGDYW 832



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 209/391 (53%), Gaps = 17/391 (4%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT---YAQRIFFCIPSPDSFLFNTLIIRN 81
           + +H  +I  GY     ++TK+L L   +G +    YA+++F  +P  +   +NT+I+  
Sbjct: 91  KSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAY 150

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           ++ +   ++   + RM+   + P N+TF++ ++ C  L   + G+ VH  +   G+  D 
Sbjct: 151 ARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDT 210

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V  AL++ YAK ++ +   KVFD M +++ V WNS+IS   Q G   +A+ LF  M++ 
Sbjct: 211 FVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQES 270

Query: 202 --GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+ PD  T   +L  CA   + + GR +H  ++   +  N+++ T L++MY+ CG ++
Sbjct: 271 EDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLN 330

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            A+EIF+ M+E N  +W +MI GY  +G   EA+ LF +M+ +G++P+  +  ++LS+C 
Sbjct: 331 YAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCV 390

Query: 320 HAGLVQEGHR----VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
                Q+G      +  +  +E G+L      V +VD++ + G ++ A+K     I +  
Sbjct: 391 SLSDSQKGRELHNFIVRNTMEEEGIL-----QVVLVDMYAKCGSMDYAWKVYDQTIKKDR 445

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406
             A+W ++L     + N  L  E   H L +
Sbjct: 446 NTALWNSILAG---YANKGLKKESFNHFLEM 473



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 200/405 (49%), Gaps = 22/405 (5%)

Query: 55  FITYAQRIFFCIPSPDSFLFN------TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYT 108
           F  +  R FF +P+P+S  F+      T  I+       +           S+++P  Y 
Sbjct: 16  FNCHYSRHFFLLPNPNSKSFSAHFGHTTTTIKLKFNGPDSPKPTSIHTKPASDVNPLPY- 74

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD---VARKVFD 165
            S++I+ C   +    G+++H  +  +GY+ D ++   ++  YA+S  +D    ARK+F+
Sbjct: 75  -SSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP++++ AWN+MI  Y +     EA G+F+ M   GV PD+ T    L  C  L   D 
Sbjct: 134 EMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDG 193

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ VH  ++  G   +  +  +LI+MYA+C +     ++FD M E N + W ++IS    
Sbjct: 194 GKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 253

Query: 286 HGYGTEAVELFHRMR--AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
            G+  +A+ LF RM+    G++P+  TF  +L+ CA+     +G ++ A + +   +   
Sbjct: 254 FGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA-NITKN 312

Query: 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE-- 401
           +     +V ++   G LN A K + + + E+ A + W +M+   + +      + + +  
Sbjct: 313 IIVETELVHMYSECGRLNYA-KEIFNRMAERNAYS-WNSMIEGYQQNGETQEALRLFKQM 370

Query: 402 HLLSVEPENPGHYVMLSNIYALA----GRMDRVEVVRNIMIQKGL 442
            L  ++P+      MLS+  +L+    GR     +VRN M ++G+
Sbjct: 371 QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGI 415


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/540 (40%), Positives = 335/540 (62%), Gaps = 6/540 (1%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI- 102
           T LL +    G + YA+R+F  +P+ +   ++ LI      +  T + L ++ M+   + 
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 103 --SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
             SP+  + ++ +++CA L  L +G  +H  +  SG  +DL    +L++ YAK+  +D A
Sbjct: 337 FLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
             +FD M  K  V++++++SGY QNG A+EA  +F  M+   V PD+ T V ++ AC+ L
Sbjct: 395 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 454

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             +  GR  H  ++ +GL     +  +LI+MYA+CG +  +R++F+MM   ++++W  MI
Sbjct: 455 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 514

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GYG+HG G EA  LF  M   G  P+ VTF+ +LSAC+H+GLV EG   F  M   YGL
Sbjct: 515 AGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGL 574

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P +EH++CMVDL  R G L+EAY+F++  +  +    VW A+LGAC+++KN DLG +V+
Sbjct: 575 TPRMEHYICMVDLLSRGGFLDEAYEFIQS-MPLRADVRVWVALLGACRVYKNIDLGKKVS 633

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
             +  + PE  G++V+LSNIY+ AGR D    VR I   +G KK  G S +E++   + F
Sbjct: 634 RMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAF 693

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
             GD+SHP + EIY+ LD ++   ++ GY P++   + +LEEEE+E +L  HSEKLA+A+
Sbjct: 694 VGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAY 753

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           G++  S   TI + KNLR+C DCH+ IK IS+   R IIVRD  RFHHFK G CSC D+W
Sbjct: 754 GILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 181/339 (53%), Gaps = 21/339 (6%)

Query: 53  AGFITYAQRIFFCIPSPDSFLFNTLI--IRNSKANFSTDSLLFYRRMIVSNISPSNYTFS 110
           +G ++ A  +F  IPSPD   +N LI    +S    + D L  YRRM+   ++P+NYTF 
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
             +K+C+ L+  + GRA+H H   +G  +DL V  AL++ Y K   +  A  +F  MP +
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 171 SVVAWNSMISGYEQNGFAKEAIG--LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
            +VAWN+M++GY  +G    A+   L   M+   + P+++T V +L   AQ G +  G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 229 VHEFIVGQGLDVN----------VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
           VH + +   L  N          V+L T+L++MYA+CG++  AR +FD M   N + W+A
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA-VLSACAHAGLVQEGHRVFASMRQE 337
           +I G+ +    T+A  LF  M A G+   + T +A  L ACA    ++ G ++ A + + 
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVI 371
            G+   +     ++ ++ +AGL+++A        VKD +
Sbjct: 370 -GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTV 407


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/538 (39%), Positives = 337/538 (62%), Gaps = 2/538 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T LL +      + YA R+F  +P  +   ++ LI      +  T++   ++ M+V  + 
Sbjct: 244 TALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLC 303

Query: 104 -PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
             S  + ++ ++ CA L+ L++G  +H  +  SG  +DL    +L++ YAK+  ++ A  
Sbjct: 304 FLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATM 363

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
            FD +  K  +++ +++SG  QNG A+EA  +F  M+   + PD  T V ++ AC+ L  
Sbjct: 364 FFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAA 423

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           +  G+  H  ++ +GL +   +  SLI+MYA+CG +  +R++FD M   +V++W  MI+G
Sbjct: 424 LQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAG 483

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
           YG+HG G EA  LF  M+  G  P++VTF+ +++AC+H+GLV EG   F +M  +YG+LP
Sbjct: 484 YGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILP 543

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
            +EH++CMVDL  R GLL+EAY+F++  +  K    VW A+LGAC++HKN DLG +V+  
Sbjct: 544 RMEHYICMVDLLARGGLLDEAYQFIQS-MPLKADVRVWGALLGACRIHKNIDLGKQVSRI 602

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
           +  + PE  G++V+LSNI++ AGR D    VR I   KG KK  GYS +E++   + F  
Sbjct: 603 IQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVG 662

Query: 463 GDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGL 522
           GD+SHP + +IY  LD +M   ++ GY  ++   + +LEEEE+E +L YHSEKLA+AFG+
Sbjct: 663 GDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGV 722

Query: 523 MRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +  +   TI + KNLR+C DCH+AIK++++  NR IIVRD  RFHHFK G CSC ++W
Sbjct: 723 LSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 179/344 (52%), Gaps = 18/344 (5%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+++F  IP+PD+  +N LI   S       ++  YR M+   ++P+ YTF  V+
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           K+C+ L  L  GR +H H   +G  +DL V  AL++ Y +      AR VF +MP + VV
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 174 AWNSMISGYEQNGFAKEAIG-LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           AWN+M++GY  +G    AI  L ++    G+ P+++T V +L   AQ G +  G  +H +
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAY 227

Query: 233 IVGQGLDVN---VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
            +   L+ N   V++ T+L++MYA+C  +  A  +F  M   N + W+A+I G+ +    
Sbjct: 228 CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRM 287

Query: 290 TEAVELFHRMRAHGVRPNNVTFVA-VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
           TEA  LF  M   G+   + T VA  L  CA    +  G ++ A + +  G+   +    
Sbjct: 288 TEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKS-GIHADLTASN 346

Query: 349 CMVDLFGRAGLLNEAYKF-----VKDVIGEKPAPAVWTAMLGAC 387
            ++ ++ +AGL+NEA  F     VKD I        + A+L  C
Sbjct: 347 SLLSMYAKAGLINEATMFFDEIAVKDTIS-------YGALLSGC 383



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 154/313 (49%), Gaps = 15/313 (4%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNS 82
           Q+HA +  +G     +    LLS+   AG I  A   F  I   D+  +  L+   ++N 
Sbjct: 328 QLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNG 387

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
           KA    ++ L +++M   N+ P   T  ++I +C+HL+ L  G+  H  V + G   +  
Sbjct: 388 KAE---EAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETS 444

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           +  +L++ YAK   +D++R+VFD+MP + VV+WN+MI+GY  +G  KEA  LF  M++ G
Sbjct: 445 ICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQG 504

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGR-WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
             PD  T +C++AAC+  G +  G+ W        G+   +     ++++ AR G + +A
Sbjct: 505 FAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEA 564

Query: 262 REIFDMMS-ELNVIAWTAMISGYGMH---GYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
            +    M  + +V  W A++    +H     G +   +  ++   G   N V    + SA
Sbjct: 565 YQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGT-GNFVLLSNIFSA 623

Query: 318 CAHAGLVQEGHRV 330
              AG   E   V
Sbjct: 624 ---AGRFDEAAEV 633


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/613 (38%), Positives = 351/613 (57%), Gaps = 54/613 (8%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF----ITYAQRIFFCIPSPDSFLFNT 76
           ++ L Q+HA  I +G  R      ++L     +      + YA +IF  +P  + F +NT
Sbjct: 29  IRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNT 88

Query: 77  LIIRNSKANFSTDSL---LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +I   S+++     +   LF   M    I P+ +TF +V+K+CA    +  G+ +H    
Sbjct: 89  IIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLAL 148

Query: 134 VSGYDSDLHVQAALVNFYA----------------------------------------- 152
             G+  D  V + LV  Y                                          
Sbjct: 149 KYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMI 208

Query: 153 ----KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVNPDS 207
               +  +   AR +FD+M  +SVV+WN+MISGY QNGF K+A+ +F  M+    + P+ 
Sbjct: 209 DGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNY 268

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
            T V VL A ++LG ++LG W+H +    G+ ++ VL ++LI+MY++CG + KA  +F+ 
Sbjct: 269 VTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFER 328

Query: 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG 327
           +   NVI W+AMI+G+ +HG   +A++ F +MR  GVRP++V ++ +L+AC+HAGLV+EG
Sbjct: 329 LPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEG 388

Query: 328 HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
            R F+ M    GL P +EH+ CMVDL GR GLL+EA +F+ + +  KP   +W A+LGAC
Sbjct: 389 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILN-MPIKPDDVIWKALLGAC 447

Query: 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVG 447
           +MH+N ++G  VA  L+ + P + G YV LSN+YA  G    V  +R  M +  ++K  G
Sbjct: 448 RMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPG 507

Query: 448 YSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREY 507
            S +++D   + F + D SHP   EI   L E+  + R AGY P +   +  LEEE++E 
Sbjct: 508 CSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKEN 567

Query: 508 SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFH 567
           +L YHSEK+A AFGL+ TSPG  IRIVKNLR+C DCHS+IK IS    R+I VRDR RFH
Sbjct: 568 ALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFH 627

Query: 568 HFKRGSCSCLDYW 580
           HF+ GSCSC+DYW
Sbjct: 628 HFQDGSCSCMDYW 640



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 159/343 (46%), Gaps = 64/343 (18%)

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN----NVD 158
           SP++  F   I +C  +  L+    +H     SG   D    A ++ F A S+    ++D
Sbjct: 14  SPASSLFPQ-INTCRTIRDLS---QIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLD 69

Query: 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKE--AIGLF-NLMRDFGVNPDSTTCVCVLA 215
            A K+F++MP ++  +WN++I G+ ++   K   AI LF  +M D  + P+  T   VL 
Sbjct: 70  YAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLK 129

Query: 216 ACAQLGDIDLGRWVH-----------EFIVGQ--------GL------------------ 238
           ACA+ G I  G+ +H           EF++          GL                  
Sbjct: 130 ACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMV 189

Query: 239 --------DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
                   D  VVL   +I+ Y R G+   AR +FD M + +V++W  MISGY  +G+  
Sbjct: 190 MMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFK 249

Query: 291 EAVELFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGH--RVFASMRQEYGLLPGVEHH 347
           +AVE+F  M +   +RPN VT V+VL A +  G ++ G    ++A   ++ G+       
Sbjct: 250 DAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYA---EDSGIRIDDVLG 306

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
             ++D++ + G++ +A    + +  E      W+AM+    +H
Sbjct: 307 SALIDMYSKCGIIEKAIMVFERLPREN--VITWSAMINGFAIH 347


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/586 (39%), Positives = 351/586 (59%), Gaps = 13/586 (2%)

Query: 4   KQPHSPAYEAILKAGPRL---KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           ++P +  Y  +LKA   L   +  ++VHA ++V G      +   +LS+    G +  A+
Sbjct: 120 QKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAAR 179

Query: 61  RIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            +F  +   D   +NT++   ++N +A  + +     RR           T  A++ +C 
Sbjct: 180 VVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRR---DGFVGDRTTLLALLSACG 236

Query: 118 HLSILNLGRAVHCHVFVSGYDSDL---HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
            +  L +G+ +H +V  +G    +    +  ++++ Y    +V  ARK+F+ +  K VV+
Sbjct: 237 DVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVS 296

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           WNS+ISGYE+ G A +A+ LF  M   G  PD  T + VLAAC Q+  + LG  V  ++V
Sbjct: 297 WNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVV 356

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
            +G  VNVV+ T+LI MYA CG++  A  +FD M E N+ A T M++G+G+HG G EA+ 
Sbjct: 357 KRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAIS 416

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
           +F+ M   GV P+   F AVLSAC+H+GLV EG  +F  M ++Y + P   H+ C+VDL 
Sbjct: 417 IFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLL 476

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
           GRAG L+EAY  +++ +  KP   VWTA+L AC++H+N  L V  A+ L  + P+    Y
Sbjct: 477 GRAGYLDEAYAVIEN-MKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGY 535

Query: 415 VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIY 474
           V LSNIYA   R + VE VR ++ ++ L+K   YS VE+++  + F +GD SH  +++IY
Sbjct: 536 VCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIY 595

Query: 475 QYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIV 534
             L +L  + ++AGY P++   ++++EEE +E  L  HSE+LALAF L+ T PG TIRI 
Sbjct: 596 AKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRIT 655

Query: 535 KNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KNLR+C DCH+ IK IS  TNREII+RD  RFHHF+ G CSC  YW
Sbjct: 656 KNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701



 Score =  214 bits (546), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 153/489 (31%), Positives = 245/489 (50%), Gaps = 60/489 (12%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---------QVHAHLIVAGYGRSRSML-TKLLSLVCDAG 54
           +P S +    L+ G  L+ L          Q+HAH+   G  R  + L TKL +     G
Sbjct: 13  KPSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCG 72

Query: 55  FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
            + YAQ IF  I   +SFL+N++I   +  N  + +L  Y +M+     P N+T+  V+K
Sbjct: 73  HMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLK 132

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           +C  L +  +GR VH  V V G + D++V  ++++ Y K  +V+ AR VFDRM  + + +
Sbjct: 133 ACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTS 192

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           WN+M+SG+ +NG A+ A  +F  MR  G   D TT + +L+AC  + D+ +G+ +H ++V
Sbjct: 193 WNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVV 252

Query: 235 GQGLD---VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
             G      N  L  S+I+MY  C +VS AR++F+ +   +V++W ++ISGY   G   +
Sbjct: 253 RNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQ 312

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSAC-----------AHAGLVQEGH------------ 328
           A+ELF RM   G  P+ VT ++VL+AC             + +V+ G+            
Sbjct: 313 ALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIG 372

Query: 329 ------------RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE--K 374
                       RVF  M ++   LP       MV  FG  G   EA     +++G+   
Sbjct: 373 MYANCGSLVCACRVFDEMPEKN--LPAC---TVMVTGFGIHGRGREAISIFYEMLGKGVT 427

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLL---SVEPENPGHYVMLSNIYALAGRMDRV- 430
           P   ++TA+L AC      D G E+   +    SVEP  P HY  L ++   AG +D   
Sbjct: 428 PDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPR-PTHYSCLVDLLGRAGYLDEAY 486

Query: 431 EVVRNIMIQ 439
            V+ N+ ++
Sbjct: 487 AVIENMKLK 495


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/535 (40%), Positives = 323/535 (60%), Gaps = 1/535 (0%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LL +    G I  A  IF  IP  D  L++ LI R +++  +  +   + RM+ S + P+
Sbjct: 290 LLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPN 349

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            ++ S V+++CA+++ L LG  +H      GY+S+L V  AL++ YAK  N++ + ++F 
Sbjct: 350 EFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFS 409

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            + D + V+WN++I GY Q+GFA++A+ +F+ MR   +     T   VL ACA    I  
Sbjct: 410 SLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKH 469

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
              +H  I     + + ++  SLI+ YA+CG +  A ++F+ + E +V++W ++IS Y +
Sbjct: 470 AVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYAL 529

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           HG  T A+ELF RM    ++ N+VTFV++LS C   GLV +G  +F SM  ++ + P +E
Sbjct: 530 HGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSME 589

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ C+V L GRAG L +A KF+ D I   P+P VW A+L +C +HKN  LG   AE +L 
Sbjct: 590 HYTCIVRLLGRAGRLTDALKFIGD-IPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLD 648

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           +EP +   YV+LSN+YA AG +D V + R  M   G+KK  G S VE+  + + FS+G  
Sbjct: 649 IEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSA 708

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
            HP+   I   L+ L  +    GYVP+    +H+++EEE+   L  HSE+LALA+GL  T
Sbjct: 709 DHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMT 768

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            PG  IRI+KNLR C+DCH+  K IS    REIIVRD  RFHHF+ G CSC DYW
Sbjct: 769 PPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/483 (24%), Positives = 229/483 (47%), Gaps = 43/483 (8%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +HA     G+ R+  + T L+      G + +A+ +F  I   D+  +  ++   S+ + 
Sbjct: 170 IHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDI 229

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
              +L  + +M ++   P+ +  ++ +K+   LS   LG+ +H     + YD++ HV  A
Sbjct: 230 PEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGA 289

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNP 205
           L++ YAK  +++ A  +F+ +P   V+ W+ +IS Y Q+   ++A  +F  +MR F V P
Sbjct: 290 LLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSF-VVP 348

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           +  +   VL ACA +  ++LG  +H   +  G +  + +  +L++MYA+C N+  + EIF
Sbjct: 349 NEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIF 408

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
             + + N ++W  +I GY   G+  +A+ +FH MRA  +    VTF +VL ACA+   ++
Sbjct: 409 SSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIK 468

Query: 326 EGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
              ++ + + +        +  VC  ++D + + G + +A K  + ++  +     W ++
Sbjct: 469 HAVQIHSLIEKSTF---NNDTIVCNSLIDTYAKCGFIRDALKVFESIV--ECDVVSWNSI 523

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           + A  +H                           +N   L  RM++ ++  N +    L 
Sbjct: 524 ISAYALHGR------------------------ATNALELFDRMNKSDIKANDVTFVSLL 559

Query: 444 KHVGYSTVEVDQKNYLFS--MGDKSHPNTNEIYQYLDELMGRC-------REAGYVPESE 494
              G ST  V+Q  +LF+  M D     + E Y  +  L+GR        +  G +P + 
Sbjct: 560 SVCG-STGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTP 618

Query: 495 SAM 497
           S M
Sbjct: 619 SPM 621



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 134/285 (47%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LL+     G +  A+R+F  +P  +   F TL+   +      ++L  +RR+       +
Sbjct: 88  LLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVN 147

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           ++  + ++K    +    L   +H      G+D +  V  AL++ Y+    V  AR VFD
Sbjct: 148 HFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFD 207

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            +  K  V W +M+S Y +N   + A+  F+ MR  G  P+       L A   L    L
Sbjct: 208 GIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALL 267

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ +H   V    D    +  +L++MYA+CG++  A  IF+M+   +VI W+ +IS Y  
Sbjct: 268 GKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQ 327

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
                +A E+F RM    V PN  +   VL ACA+   ++ G ++
Sbjct: 328 SCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQI 372



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 164/339 (48%), Gaps = 12/339 (3%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+  +   +L+A   +  L+   Q+H   I  GY     +   L+ +      +  +  I
Sbjct: 348 PNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEI 407

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   +   +NT+I+   ++ F+ D+L  +  M  +++  +  TFS+V+++CA+ S +
Sbjct: 408 FSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSI 467

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
                +H  +  S +++D  V  +L++ YAK   +  A KVF+ + +  VV+WNS+IS Y
Sbjct: 468 KHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAY 527

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV-HEFIVGQGLDVN 241
             +G A  A+ LF+ M    +  +  T V +L+ C   G ++ G W+ +  ++   +  +
Sbjct: 528 ALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPS 587

Query: 242 VVLATSLINMYARCGNVSKA-REIFDMMSELNVIAWTAMISGYGMH---GYGTEAVELFH 297
           +   T ++ +  R G ++ A + I D+ S  + + W A++S   +H     G  A E   
Sbjct: 588 MEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVL 647

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
            +  H    +  T+V + +  A AG++ E      SMR 
Sbjct: 648 DIEPH----DETTYVLLSNMYAAAGILDEVALWRKSMRN 682



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 75/164 (45%), Gaps = 17/164 (10%)

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG--LDVNVVLATSLINMYARCGNVSKARE 263
           DS  C   L  C   GD   GR VH  +V +G    ++   A  L+N YA+ G ++ AR 
Sbjct: 44  DSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARR 103

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS------- 316
           +FD M E N +++  ++ GY + G   EA+ELF R++  G   N+     +L        
Sbjct: 104 LFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDA 163

Query: 317 ---ACA-HAGLVQEGHR----VFASMRQEYGLLPGVEHHVCMVD 352
              AC  HA   + GH     V  ++   Y L   V H  C+ D
Sbjct: 164 PGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFD 207


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/633 (37%), Positives = 348/633 (54%), Gaps = 67/633 (10%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           ++ A      L+Q+H  L       S  ++T+ +S       + YA  IF      +S+L
Sbjct: 48  LIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYL 107

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           FN LI   ++ +    S+ F+  M+   ISP   TF  V+KS A LS   +GRA+HC + 
Sbjct: 108 FNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGIL 167

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR--------------------------- 166
             G + D  V+ +LV+ Y K   +  A KVFD                            
Sbjct: 168 KFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLV 227

Query: 167 --------MPDKSVVAWNSMISGYEQ--------------------------NGFAK--- 189
                   MP K   +WNS+I+G+ +                          NGF++   
Sbjct: 228 KATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGD 287

Query: 190 --EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
             +A+  F  M + G  P+  T V  L+ACA++G +D G  +H ++ G G  +N+V+ T+
Sbjct: 288 PEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTA 347

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L++MYA+CGN+  A ++F    E  ++ W+ MI G+ +HG+  +A++ F  M+  G +P+
Sbjct: 348 LVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPD 407

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           +V F+AVL+AC+H+G V EG + F +MR+ Y + P ++H+  +VD+ GRAG L+EA KF+
Sbjct: 408 SVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFI 467

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           +  +   P   VW A+  AC+ HKN ++    ++ LL +EP++PG YV LSN YA  GR 
Sbjct: 468 R-AMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRW 526

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           D  E VR  M   G  K  G+S +EVD K + F  GD +H    EIY  LDE+    RE 
Sbjct: 527 DDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREK 586

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           GY  E E  +H +EEEE+E +L YHSEKLALAFG++ T PG T+RIVKNLR+CVDCHS +
Sbjct: 587 GYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFM 646

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           K+ S  + REII+RD  RFHHF  G CSC DYW
Sbjct: 647 KYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/561 (36%), Positives = 334/561 (59%), Gaps = 1/561 (0%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           +L  L+++H +    G+ +   +    ++       +  A+R+F  +       +N LI 
Sbjct: 416 QLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIG 475

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
            +++  F   SL  +  M+ S + P  +T  +++ +CA L  L  G+ +H  +  +G + 
Sbjct: 476 AHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLEL 535

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D  +  +L++ Y + +++ + + +FD+M +KS+V WN MI+G+ QN    EA+  F  M 
Sbjct: 536 DEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQML 595

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+ P       VL AC+Q+  + LG+ VH F +   L  +  +  +LI+MYA+CG + 
Sbjct: 596 SGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCME 655

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           +++ IFD ++E +   W  +I+GYG+HG+G +A+ELF  M+  G RP++ TF+ VL AC 
Sbjct: 656 QSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACN 715

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           HAGLV EG +    M+  YG+ P +EH+ C+VD+ GRAG L EA K V ++  E P   +
Sbjct: 716 HAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDE-PDSGI 774

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W+++L +C+ + + ++G EV++ LL +EP    +YV+LSN+YA  G+ D V  VR  M +
Sbjct: 775 WSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKE 834

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
            GL K  G S +E+    Y F + D S   + +I Q   +L  +  + GY P++   +HE
Sbjct: 835 NGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHE 894

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           LEEE +   L+ HSEKLA++FGL+ T+ G T+R+ KNLR+CVDCH+AIK +S    R+II
Sbjct: 895 LEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDII 954

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           VRD  RFHHFK G C+C D+W
Sbjct: 955 VRDNKRFHHFKNGLCTCGDFW 975



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 163/301 (54%), Gaps = 6/301 (1%)

Query: 25  QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           ++VHA +  +   R+  +L T+++++    G  + ++ +F      D FL+N L+   S+
Sbjct: 112 RKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSR 171

Query: 84  ANFSTDSL-LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
                D++ LF   +  ++++P N+T   V K+CA ++ + LG AVH     +G  SD  
Sbjct: 172 NALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAF 231

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN---LMR 199
           V  AL+  Y K   V+ A KVF+ M ++++V+WNS++    +NG   E  G+F    +  
Sbjct: 232 VGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISE 291

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
           + G+ PD  T V V+ ACA +G++ +G  VH      G+   V +  SL++MY++CG + 
Sbjct: 292 EEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLG 351

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM-RAHGVRPNNVTFVAVLSAC 318
           +AR +FDM    NV++W  +I GY   G      EL   M R   VR N VT + VL AC
Sbjct: 352 EARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPAC 411

Query: 319 A 319
           +
Sbjct: 412 S 412



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 193/397 (48%), Gaps = 5/397 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK-AN 85
           VH      G     ++   L+ +    G++  A+ +F      +   +NT+I   SK  +
Sbjct: 321 VHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGD 380

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
           F     L         +  +  T   V+ +C+    L   + +H + F  G+  D  V  
Sbjct: 381 FRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVAN 440

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           A V  YAK +++D A +VF  M  K+V +WN++I  + QNGF  +++ LF +M D G++P
Sbjct: 441 AFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDP 500

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           D  T   +L ACA+L  +  G+ +H F++  GL+++  +  SL+++Y +C ++   + IF
Sbjct: 501 DRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIF 560

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D M   +++ W  MI+G+  +    EA++ F +M + G++P  +    VL AC+    ++
Sbjct: 561 DKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALR 620

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            G  V +   + + L         ++D++ + G + E  + + D + EK   AVW  ++ 
Sbjct: 621 LGKEVHSFALKAH-LSEDAFVTCALIDMYAKCGCM-EQSQNIFDRVNEKD-EAVWNVIIA 677

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
              +H +    +E+ E L+  +   P  +  L  + A
Sbjct: 678 GYGIHGHGLKAIELFE-LMQNKGGRPDSFTFLGVLIA 713



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 138/270 (51%), Gaps = 6/270 (2%)

Query: 99  VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS-GYDSDLHVQAALVNFYAKSNNV 157
           VS+   S      ++++C H   +++GR VH  V  S    +D+ +   ++  Y+   + 
Sbjct: 85  VSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSP 144

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAA 216
             +R VFD   +K +  +N+++SGY +N   ++AI LF  L+    + PD+ T  CV  A
Sbjct: 145 SDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKA 204

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           CA + D++LG  VH   +  G   +  +  +LI MY +CG V  A ++F+ M   N+++W
Sbjct: 205 CAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSW 264

Query: 277 TAMISGYGMHGYGTEAVELFHRM---RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
            +++     +G   E   +F R+      G+ P+  T V V+ ACA  G V+ G  V   
Sbjct: 265 NSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMG-MVVHG 323

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           +  + G+   V  +  +VD++ + G L EA
Sbjct: 324 LAFKLGITEEVTVNNSLVDMYSKCGYLGEA 353



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 125/526 (23%), Positives = 226/526 (42%), Gaps = 58/526 (11%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + VHA  + AG      +   L+++    GF+  A ++F  + + +   +N+++   S+ 
Sbjct: 215 EAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSEN 274

Query: 85  NFSTDSLLFYRRMIVS---NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
               +    ++R+++S    + P   T   VI +CA +  + +G  VH   F  G   ++
Sbjct: 275 GGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEV 334

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM-RD 200
            V  +LV+ Y+K   +  AR +FD    K+VV+WN++I GY + G  +    L   M R+
Sbjct: 335 TVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQRE 394

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
             V  +  T + VL AC+    +   + +H +    G   + ++A + +  YA+C ++  
Sbjct: 395 EKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDC 454

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A  +F  M    V +W A+I  +  +G+  ++++LF  M   G+ P+  T  ++L ACA 
Sbjct: 455 AERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACAR 514

Query: 321 AGLVQEGHRVFASMRQ---EYGLLPGV------------------------EHHVC---M 350
              ++ G  +   M +   E     G+                        +  VC   M
Sbjct: 515 LKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVM 574

Query: 351 VDLFGRAGLLNEAYKFVKDVI--GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE- 407
           +  F +  L  EA    + ++  G KP     T +LGAC       LG EV    L    
Sbjct: 575 ITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHL 634

Query: 408 PENPGHYVMLSNIYALAGRM-------DRV----EVVRNIMIQK-GLKKHVGYSTVEVDQ 455
            E+      L ++YA  G M       DRV    E V N++I   G+  H G   +E+  
Sbjct: 635 SEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGH-GLKAIEL-- 691

Query: 456 KNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE 501
             +         P++   + +L  L+  C  AG V E    + +++
Sbjct: 692 --FELMQNKGGRPDS---FTFLGVLIA-CNHAGLVTEGLKYLGQMQ 731


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/605 (37%), Positives = 344/605 (56%), Gaps = 49/605 (8%)

Query: 17  AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCIPSPDSFLF 74
           A   +  ++Q H+ L+  G   +   ++++ +   +   G I YA ++F  +P+PD+FL+
Sbjct: 11  ACSSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLY 70

Query: 75  NTLIIRNSKANFSTD-----SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           NTL     KA FS       SLLFY  M+   ++P+ +TF ++I++C    +    + +H
Sbjct: 71  NTLF----KAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRAC---KLEEEAKQLH 123

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
            HV   G+  D +    L++ Y    ++D AR+VF  M D +VV+W S++SGY Q G   
Sbjct: 124 AHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVD 183

Query: 190 EAIGLFNLM-----------------------------RDFGVNP----DSTTCVCVLAA 216
           EA  +F LM                             R   V      D      +L+A
Sbjct: 184 EAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSA 243

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C  +G ++ G W+H+++   G+ ++  LAT++I+MY +CG + KA  +F  +    V +W
Sbjct: 244 CTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSW 303

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
             MI G+ MHG G +A+ LF  M     V P+++TFV VL+ACAH+GLV+EG   F  M 
Sbjct: 304 NCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMV 363

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
             +G+ P  EH+ CMVDL  RAG L EA K + D +   P  AV  A+LGAC++H N +L
Sbjct: 364 DVHGIDPTKEHYGCMVDLLARAGRLEEAKKVI-DEMPMSPDAAVLGALLGACRIHGNLEL 422

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
           G EV   ++ ++PEN G YV+L N+YA  G+ ++V  VR +M  +G+KK  G+S +E++ 
Sbjct: 423 GEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEG 482

Query: 456 KNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEK 515
               F  G + HP    IY  + E++   R  G+VP+++  +H+L EEERE  L YHSEK
Sbjct: 483 VVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEK 542

Query: 516 LALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCS 575
           LA+A+GL++T  G T+R+ KNLR+C DCH A K IS   + +II+RDR RFHHF  G CS
Sbjct: 543 LAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECS 602

Query: 576 CLDYW 580
           C DYW
Sbjct: 603 CKDYW 607


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/566 (37%), Positives = 341/566 (60%), Gaps = 3/566 (0%)

Query: 17  AGPRLKPL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFN 75
           A  RL  L + VH+  + A + R       LL +    G +  A+ +F  +       + 
Sbjct: 307 ADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYT 366

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
           ++I   ++   + +++  +  M    ISP  YT +AV+  CA   +L+ G+ VH  +  +
Sbjct: 367 SMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN 426

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
               D+ V  AL++ YAK  ++  A  VF  M  K +++WN++I GY +N +A EA+ LF
Sbjct: 427 DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLF 486

Query: 196 NLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           NL+  +   +PD  T  CVL ACA L   D GR +H +I+  G   +  +A SL++MYA+
Sbjct: 487 NLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAK 546

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CG +  A  +FD ++  ++++WT MI+GYGMHG+G EA+ LF++MR  G+  + ++FV++
Sbjct: 547 CGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSL 606

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L AC+H+GLV EG R F  MR E  + P VEH+ C+VD+  R G L +AY+F+++ +   
Sbjct: 607 LYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIEN-MPIP 665

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P   +W A+L  C++H +  L  +VAE +  +EPEN G+YV+++NIYA A + ++V+ +R
Sbjct: 666 PDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLR 725

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
             + Q+GL+K+ G S +E+  +  +F  GD S+P T  I  +L ++  R  E GY P ++
Sbjct: 726 KRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTK 785

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
            A+ + EE E+E +L  HSEKLA+A G++ +  G  IR+ KNLR+C DCH   KF+S  T
Sbjct: 786 YALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLT 845

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
            REI++RD  RFH FK G CSC  +W
Sbjct: 846 RREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 196/372 (52%), Gaps = 15/372 (4%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  ++V   +   G+    ++ +KL  +  + G +  A R+F  +    +  +N L+  
Sbjct: 110 LKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNE 169

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            +K+   + S+  +++M+ S +   +YTFS V KS + L  ++ G  +H  +  SG+   
Sbjct: 170 LAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGER 229

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
             V  +LV FY K+  VD ARKVFD M ++ V++WNS+I+GY  NG A++ + +F  M  
Sbjct: 230 NSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLV 289

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G+  D  T V V A CA    I LGR VH   V            +L++MY++CG++  
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDS 349

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A+ +F  MS+ +V+++T+MI+GY   G   EAV+LF  M   G+ P+  T  AVL+ CA 
Sbjct: 350 AKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCAR 409

Query: 321 AGLVQEGHRVFASMRQ-EYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEK 374
             L+ EG RV   +++ + G    V +   ++D++ + G + EA        VKD+I   
Sbjct: 410 YRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVKDIIS-- 465

Query: 375 PAPAVWTAMLGA 386
                W  ++G 
Sbjct: 466 -----WNTIIGG 472



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 167/369 (45%), Gaps = 41/369 (11%)

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
           +I P   T  +V++ CA    L  G+ V   +  +G+  D ++ + L   Y    ++  A
Sbjct: 91  DIDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEA 148

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
            +VFD +  +  + WN +++   ++G    +IGLF  M   GV  DS T  CV  + + L
Sbjct: 149 SRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSL 208

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             +  G  +H FI+  G      +  SL+  Y +   V  AR++FD M+E +VI+W ++I
Sbjct: 209 RSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSII 268

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-------- 332
           +GY  +G   + + +F +M   G+  +  T V+V + CA + L+  G  V +        
Sbjct: 269 NGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFS 328

Query: 333 ----------SMRQEYGLLP------------GVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
                      M  + G L              V  +  M+  + R GL  EA K  +++
Sbjct: 329 REDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM 388

Query: 371 IGEKPAPAVW--TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN----IYALA 424
             E  +P V+  TA+L  C  ++  D G  V E    ++  + G  + +SN    +YA  
Sbjct: 389 EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEW---IKENDLGFDIFVSNALMDMYAKC 445

Query: 425 GRMDRVEVV 433
           G M   E+V
Sbjct: 446 GSMQEAELV 454



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           D+SV   N+ +  + ++G  + A+ L  +   + ++P   T   VL  CA    +  G+ 
Sbjct: 58  DRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDP--RTLCSVLQLCADSKSLKDGKE 115

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           V  FI G G  ++  L + L  MY  CG++ +A  +FD +     + W  +++     G 
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAV 314
            + ++ LF +M + GV  ++ TF  V
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCV 201


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/538 (39%), Positives = 337/538 (62%), Gaps = 2/538 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T LL +      + YA R+F  +P  +   ++ LI      +  T++   ++ M+V  + 
Sbjct: 244 TALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLC 303

Query: 104 -PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
             S  + ++ ++ CA L+ L++G  +H  +  SG  +DL    +L++ YAK+  ++ A  
Sbjct: 304 FLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATM 363

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
            FD +  K  +++ +++SG  QNG A+EA  +F  M+   + PD  T V ++ AC+ L  
Sbjct: 364 FFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAA 423

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           +  G+  H  ++ +GL +   +  SLI+MYA+CG +  +R++FD M   +V++W  MI+G
Sbjct: 424 LQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAG 483

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
           YG+HG G EA  LF  M+  G  P++VTF+ +++AC+H+GLV EG   F +M  +YG+LP
Sbjct: 484 YGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILP 543

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
            +EH++CMVDL  R GLL+EAY+F++  +  K    VW A+LGAC++HKN DLG +V+  
Sbjct: 544 RMEHYICMVDLLARGGLLDEAYQFIQS-MPLKADVRVWGALLGACRIHKNIDLGKQVSRI 602

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
           +  + PE  G++V+LSNI++ AGR D    VR I   KG KK  GYS +E++   + F  
Sbjct: 603 IQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVG 662

Query: 463 GDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGL 522
           GD+SHP + +IY  LD +M   ++ GY  ++   + +LEEEE+E +L YHSEKLA+AFG+
Sbjct: 663 GDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGV 722

Query: 523 MRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +  +   TI + KNLR+C DCH+AIK++++  NR IIVRD  RFHHFK G CSC ++W
Sbjct: 723 LSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 179/344 (52%), Gaps = 18/344 (5%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+++F  IP+PD+  +N LI   S       ++  YR M+   ++P+ YTF  V+
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           K+C+ L  L  GR +H H   +G  +DL V  AL++ Y +      AR VF +MP + VV
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 174 AWNSMISGYEQNGFAKEAIG-LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           AWN+M++GY  +G    AI  L ++    G+ P+++T V +L   AQ G +  G  +H +
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAY 227

Query: 233 IVGQGLDVN---VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
            +   L+ N   V++ T+L++MYA+C  +  A  +F  M   N + W+A+I G+ +    
Sbjct: 228 CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRM 287

Query: 290 TEAVELFHRMRAHGVRPNNVTFVA-VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
           TEA  LF  M   G+   + T VA  L  CA    +  G ++ A + +  G+   +    
Sbjct: 288 TEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKS-GIHADLTASN 346

Query: 349 CMVDLFGRAGLLNEAYKF-----VKDVIGEKPAPAVWTAMLGAC 387
            ++ ++ +AGL+NEA  F     VKD I        + A+L  C
Sbjct: 347 SLLSMYAKAGLINEATMFFDEIAVKDTIS-------YGALLSGC 383



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 139/266 (52%), Gaps = 8/266 (3%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNS 82
           Q+HA +  +G     +    LLS+   AG I  A   F  I   D+  +  L+   ++N 
Sbjct: 328 QLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNG 387

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
           KA    ++ L +++M   N+ P   T  ++I +C+HL+ L  G+  H  V + G   +  
Sbjct: 388 KAE---EAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETS 444

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           +  +L++ YAK   +D++R+VFD+MP + VV+WN+MI+GY  +G  KEA  LF  M++ G
Sbjct: 445 ICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQG 504

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGR-WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
             PD  T +C++AAC+  G +  G+ W        G+   +     ++++ AR G + +A
Sbjct: 505 FAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEA 564

Query: 262 REIFDMMS-ELNVIAWTAMISGYGMH 286
            +    M  + +V  W A++    +H
Sbjct: 565 YQFIQSMPLKADVRVWGALLGACRIH 590


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/578 (37%), Positives = 342/578 (59%), Gaps = 36/578 (6%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           +S S    ++S    +G +  AQ  F  +   D   +N +I   ++  F  ++L  + +M
Sbjct: 209 KSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKM 268

Query: 98  IVSNIS-PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           ++ + S P  +T ++ + +CA+L  L LG+ +H H+  + +D+   V  AL++ Y+KS  
Sbjct: 269 LMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGG 328

Query: 157 VDVA---------------------------------RKVFDRMPDKSVVAWNSMISGYE 183
           V++A                                 R++FD +  + VVAW +MI GY 
Sbjct: 329 VEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYV 388

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNGF ++A+ LF  M   G  P++ T   +L+  + L  +D GR +H      G   +V 
Sbjct: 389 QNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVS 448

Query: 244 LATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           ++ +LI MYA+ G+++ AR +F+++  + + I WT+MI     HG G EA+ LF RM  +
Sbjct: 449 VSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLEN 508

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G++P+++T+V VLSAC H GLV++G   +  M+  + ++P   H+ CM+DLFGRAGLL E
Sbjct: 509 GIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQE 568

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A+ F++++  E P    W ++L +CK+HKN +L    AE LL +EPEN G Y  L+N+Y+
Sbjct: 569 AHAFIENMPIE-PDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYS 627

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             G+ +    +R  M  KG+KK  G+S V++  K ++F + D  HP  + IY+ + ++  
Sbjct: 628 ACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWK 687

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             ++ G+VP++ES +H+LEEE +E  L +HSEKLA+AFGL+ T    T+RI+KNLR+C D
Sbjct: 688 EIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCND 747

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CHSAIKFIS    REIIVRD  RFHHFK G CSC DYW
Sbjct: 748 CHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 138/514 (26%), Positives = 236/514 (45%), Gaps = 104/514 (20%)

Query: 6   PHSPAYEAILKAGPRLK-PL--QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFI------ 56
           P  P Y + L+   + K P   + +HA +I AG      ++  L++     GFI      
Sbjct: 12  PSDP-YTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRV 70

Query: 57  -------------------------TYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSL 91
                                      A R+F  +P PDS  +  +I+  ++     +++
Sbjct: 71  FDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAI 130

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
             +R M+  ++ P+ +T + V+ SCA +  L +GR VH  V   G  S + V  +L+N Y
Sbjct: 131 GMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMY 190

Query: 152 AKSNNVDVARKVFDRMPDKS-------------------------------VVAWNSMIS 180
           AKS +   A+ VFDRM  KS                               VV+WN+MIS
Sbjct: 191 AKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMIS 250

Query: 181 GYEQNGFAKEAIGLFN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI------ 233
           GY Q+GF +EA+ +F+ ++ D    PD  T    L+ACA L ++ LG+ +H  I      
Sbjct: 251 GYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFD 310

Query: 234 ----VGQGL-----------------------DVNVVLATSLINMYARCGNVSKAREIFD 266
               VG  L                       +++V+  T+L++ Y + G+++ AR IFD
Sbjct: 311 TFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFD 370

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            +   +V+AWTAMI GY  +G+  +A+ELF  M   G +PNN T   +LS  +    +  
Sbjct: 371 SLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDH 430

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G ++ AS  +  G    V     ++ ++ ++G +N+A ++V ++I  K     WT+M+ A
Sbjct: 431 GRQIHASATRS-GNASSVSVSNALITMYAKSGSINDA-RWVFNLIHWKRDTITWTSMIIA 488

Query: 387 CKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLS 418
              H   +  + + E +L   ++P++  +  +LS
Sbjct: 489 LAQHGLGEEALTLFERMLENGIKPDHITYVGVLS 522



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 148/306 (48%), Gaps = 44/306 (14%)

Query: 21  LKPLQQVHAHLI--------------VAGYGRS-----------RSML--------TKLL 47
           LK  +Q+HAH+I              ++ Y +S           +SM+        T LL
Sbjct: 294 LKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALL 353

Query: 48  SLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNY 107
                 G I  A+RIF  +   D   +  +I+   +  F+ D++  +R MI     P+NY
Sbjct: 354 DGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNY 413

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T + ++   + L+ L+ GR +H     SG  S + V  AL+  YAKS +++ AR VF+ +
Sbjct: 414 TLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLI 473

Query: 168 P-DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
              +  + W SMI    Q+G  +EA+ LF  M + G+ PD  T V VL+AC  +G ++ G
Sbjct: 474 HWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQG 533

Query: 227 RWVHEFIVGQGLDVNVVLATS-----LINMYARCGNVSKAREIFDMMS-ELNVIAWTAMI 280
           R  +  +     + + ++ T      +I+++ R G + +A    + M  E +VIAW +++
Sbjct: 534 RSYYNLM----QNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLL 589

Query: 281 SGYGMH 286
           +   +H
Sbjct: 590 ASCKVH 595


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 332/564 (58%), Gaps = 40/564 (7%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+ +F  +      ++N +I     +    ++   +RRM++  +    +TF++V+
Sbjct: 242 GDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVL 301

Query: 114 KSCAHLSILNLGRAVHCHV------FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
            +CA+      G++VH  +      FV   ++ L V  ALV  Y+K  N+ VAR++FD M
Sbjct: 302 SACANAGFFAHGKSVHGQITRLQPNFVP--EAALPVNNALVTLYSKCGNIAVARRIFDNM 359

Query: 168 PDKSVVAWNS-------------------------------MISGYEQNGFAKEAIGLFN 196
             K VV+WN+                               M+SGY   GF+++A+ LFN
Sbjct: 360 KSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFN 419

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            MR   V P   T    ++AC +LG +  G+ +H  +V  G + +     +LI MYARCG
Sbjct: 420 RMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCG 479

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
            V +A  +F +M  ++ ++W AMIS  G HG+G EA+ELF RM A G+ P+ ++F+ VL+
Sbjct: 480 AVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLT 539

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC H+GLV EG + F SM++++G++PG +H+  ++DL GRAG + EA   +K +  E P 
Sbjct: 540 ACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFE-PT 598

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
           P++W A+L  C+   + +LG   A+ L  + P++ G Y++LSN Y+ AGR      VR +
Sbjct: 599 PSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKL 658

Query: 437 MIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESA 496
           M  +G+KK  G S +E   K ++F +GD  HP  +++Y++L+ +  R R+ GYVP+++  
Sbjct: 659 MRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVV 718

Query: 497 MHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNR 556
           +H++E  ++E+ L  HSE+LA+ FGL++  PG T+ ++KNLR+C DCH+ + F+S A  R
Sbjct: 719 LHDMEPHQKEHILFAHSERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGR 778

Query: 557 EIIVRDRLRFHHFKRGSCSCLDYW 580
           EI+VRD  RFHHFK G CSC +YW
Sbjct: 779 EIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 189/440 (42%), Gaps = 85/440 (19%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSP--DSFLFNTLIIRNSKANFSTDSLLFYRRMIVS- 100
           T L++    AG +  A   F  +P    D+ L N +I   ++A+ +  ++  +R ++ S 
Sbjct: 92  TSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRA--VHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158
           ++ P +Y+F+A++ +  HL  +++     + C V  SG    L V  ALV  Y K   ++
Sbjct: 152 SLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALE 211

Query: 159 V---ARKVFDRMPDKSV-------------------------------VAWNSMISGYEQ 184
               ARKV D MPDK                                 V WN+MISGY  
Sbjct: 212 ATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVH 271

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH--------EFIVGQ 236
           +G   EA  LF  M    V  D  T   VL+ACA  G    G+ VH         F+   
Sbjct: 272 SGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEA 331

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA------------------ 278
            L VN     +L+ +Y++CGN++ AR IFD M   +V++W                    
Sbjct: 332 ALPVN----NALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVF 387

Query: 279 -------------MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
                        M+SGY   G+  +A++LF+RMRA  V+P + T+   +SAC   G ++
Sbjct: 388 EEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLK 447

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            G ++   + Q  G          ++ ++ R G + EA      ++        W AM+ 
Sbjct: 448 HGKQLHGHLVQ-LGFEGSNSAGNALITMYARCGAVKEANLMF--LVMPNIDSVSWNAMIS 504

Query: 386 ACKMHKNFDLGVEVAEHLLS 405
           A   H +    +E+ + +++
Sbjct: 505 ALGQHGHGREALELFDRMVA 524



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 12/173 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  +Q+H HL+  G+  S S    L+++    G +  A  +F  +P+ DS  +N +I  
Sbjct: 446 LKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISA 505

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
             +     ++L  + RM+   I P   +F  V+ +C H  +++ G       +      D
Sbjct: 506 LGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEG-----FQYFESMKRD 560

Query: 141 LHVQAA------LVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMISGYEQNG 186
             +         L++   ++  +  AR +   MP + +   W +++SG   +G
Sbjct: 561 FGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSG 613



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSEL--NVIAWTAMISGYGMHGYGTEAVELF 296
           D   V ATSL+  YA  G +  A   FD + +   + +   A+IS Y    +   AV +F
Sbjct: 85  DPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVF 144

Query: 297 HRMRAHG-VRPNNVTFVAVLSACAH 320
             + A G +RP++ +F A+LSA  H
Sbjct: 145 RSLLASGSLRPDDYSFTALLSAAGH 169


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/560 (37%), Positives = 338/560 (60%), Gaps = 1/560 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L  L+++H + +   +     +    ++     G ++YAQR+F  I S     +N LI  
Sbjct: 395 LPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGG 454

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            ++++    SL  + +M  S + P N+T  +++ +C+ L  L LG+ VH  +  +  + D
Sbjct: 455 YAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 514

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           L V  ++++ Y     +   + +FD M D S+V+WN++I+G+ QNGF + A+GLF  M  
Sbjct: 515 LFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVL 574

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
           +G+ P   + + V  AC+ L  + LGR  H + +   L+ N  +A S+I+MYA+ G +++
Sbjct: 575 YGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQ 634

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           + ++F+ + E +  +W AMI GYGMHG   EA++LF  M+  G  P+++TF+ VL+AC H
Sbjct: 635 SSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNH 694

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
           +GL+ EG R    M+  +GL P ++H+ C++D+ GRAG L+ A +   + + E+P   +W
Sbjct: 695 SGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAE-MSEEPDVGIW 753

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
            ++L  C++H+N ++G +VA  L  +EPE P +YV+LSN+YA  G+ D V  VR  M + 
Sbjct: 754 NSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEM 813

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
            L+K  G S +E++ K + F +G++      EI      L  +  + GY P++ S  H+L
Sbjct: 814 SLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQHDL 873

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
            EEE+   LR HSEKLA+ +GL++TS G T+R+ KNLR+CVDCH+A K IS    REI+V
Sbjct: 874 SEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVV 933

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RD  RFHHF +G CSC DYW
Sbjct: 934 RDNKRFHHFNKGFCSCGDYW 953



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 171/333 (51%), Gaps = 20/333 (6%)

Query: 14  ILKAGPRLKPLQQVHA-HLIVAGYGRSRS---MLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           +L+A  + K ++     H +V+G  R RS   + T+++++    G    ++  F  + S 
Sbjct: 90  LLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSK 149

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAV 128
           + F +N +I   S+     + L  + +MI  +++ P N+TF  VIK+CA +S + +G AV
Sbjct: 150 NLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAV 209

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H  V  +G   DL V  ALV+FY     V  A K+FD MP++++V+WNSMI  +  NG  
Sbjct: 210 HGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG-- 267

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
                      D    PD  T V VL  CA+  +I +G+ VH + V   LD  +V+  +L
Sbjct: 268 ----------DDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNAL 317

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA--HGVRP 306
           ++MY++ G +  ++ IF + +  NV++W  M+ G+   G      +L  +M A    V+ 
Sbjct: 318 MDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKA 377

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEY 338
           + VT +  +  C    ++     +   S++QE+
Sbjct: 378 DEVTILNAVPVCFDESVLPSLKELHCYSLKQEF 410



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 186/380 (48%), Gaps = 8/380 (2%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV--SNIS 103
           L+ +    G I  +Q IF    + +   +NT++   S       +    R+M+    ++ 
Sbjct: 317 LMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVK 376

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
               T    +  C   S+L   + +HC+     +  D  +  A V  YAK  ++  A++V
Sbjct: 377 ADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRV 436

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F  +  K++ +WN++I GY Q+   + ++     M++ G+ PD+ T   +L+AC++L  +
Sbjct: 437 FHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSL 496

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
            LG+ VH FI+   L+ ++ +  S++++Y  CG +   + +FD M + ++++W  +I+G+
Sbjct: 497 RLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGH 556

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
             +G+   A+ LF +M  +G++P  ++ + V  AC+    ++ G    A   +   LL  
Sbjct: 557 LQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKH--LLED 614

Query: 344 VEHHVC-MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
                C ++D++ + G + ++ K V + + EK A A W AM+    MH      +++ E 
Sbjct: 615 NAFIACSIIDMYAKNGAITQSSK-VFNGLKEKSA-ASWNAMIMGYGMHGRAKEAIKLFEE 672

Query: 403 LLSVEPENPGHYVMLSNIYA 422
           +      NP     L  + A
Sbjct: 673 MQRT-GRNPDDLTFLGVLTA 691


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/597 (37%), Positives = 351/597 (58%), Gaps = 38/597 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPDS-FLFNTL 77
           +K  ++ H  LI+ G       L  ++S      +G I YA  +     +P + FLFNT 
Sbjct: 1   MKQFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTT 60

Query: 78  IIRNSKANFS---TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           I   S+A        S+L + RM V +++P+N+TF+ + + C++    +LGR  H  V  
Sbjct: 61  IRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIK 120

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFD----------------------------- 165
           + ++ D+ V+ +++ FY+    ++ AR VFD                             
Sbjct: 121 NSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSL 180

Query: 166 --RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
             +M +++ ++WN MISGY QNG  KEA+ LF  M+     P+S   V VL+AC+QLG +
Sbjct: 181 FSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGAL 240

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
           D G WVH +I  + + V+ +L+ +LI+MYA+CG++  A + F    + +V A+TA ISG 
Sbjct: 241 DHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGL 300

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
            M+G   EA++LF +M+  G+ P+ V+++AVL AC+HAG V++G   FASM   +G+ P 
Sbjct: 301 AMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPE 360

Query: 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
           ++H+ CMVDL GRAGLL EA KFV   +  KP   +W A+LGAC+++ N ++G  V   L
Sbjct: 361 LDHYACMVDLLGRAGLLEEAEKFVAS-MPIKPDNVIWGALLGACRVYGNAEMGQRVGSLL 419

Query: 404 LSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMG 463
           +  +  + G Y++LSNIYA + + +  E VR  M ++ + +  G S +EV    + F  G
Sbjct: 420 VESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSG 479

Query: 464 DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLM 523
           D+SH  T EIY   +E++   ++ GY  E+ + + ++EEEE+E  + +HSEKLA+AFG +
Sbjct: 480 DRSHEKTEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFL 539

Query: 524 RTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            T  G T+RIVKN+R+C DCH AIK +S    R+I +RDR  FHHF+ G CSC DYW
Sbjct: 540 YTKSGSTLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/582 (39%), Positives = 348/582 (59%), Gaps = 6/582 (1%)

Query: 3   NKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           N +P   +  +IL A  RL  L   +++HA+ +      +  +   L+ +      + YA
Sbjct: 208 NLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYA 267

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
             +F  + + D   + T+I   ++ N  T++L   R++    +        + + +C+ L
Sbjct: 268 GLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGL 327

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             L+  + VH +    G  SDL +Q  +++ YA   N++ A ++F+ +  K VV+W SMI
Sbjct: 328 RCLSHAKEVHGYTLKRGL-SDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMI 386

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           S Y  NG A EA+G+F LM++  V PDS T V +L+A A L  ++ G+ +H FI  +G  
Sbjct: 387 SCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFM 446

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
           +      SL++MYA CG++  A ++F      +++ WT MI+ YGMHG G  AVELF  M
Sbjct: 447 LEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIM 506

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
               + P+++TF+A+L AC+H+GL+ EG R+  +M+ +Y L P  EH+ C+VDL GRA  
Sbjct: 507 EDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANH 566

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L EAY FVK +  E P   VW A LGAC++H N  LG   A+ LL ++P++PG YV++SN
Sbjct: 567 LEEAYHFVKSMQIE-PTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISN 625

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           ++A +GR   VE VR  M   GLKK+ G S +EV  K + F + DKSHP + +IYQ L +
Sbjct: 626 VFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQ 685

Query: 480 LMGRC-REAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           +  +  +E GYVP+++  +H + +EE+   L  HSE+LA+A+GLM TS G  IRI KNLR
Sbjct: 686 ITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLR 745

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +CVDCH+  K +S    RE+IVRD  RFHHF+ G CSC D+W
Sbjct: 746 VCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 206/420 (49%), Gaps = 32/420 (7%)

Query: 8   SPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           S  +  +LKA   ++ +    ++H  +I  GY     +   L+S+      I  A+++F 
Sbjct: 10  SFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFD 69

Query: 65  CI-PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123
            +    D   +N++I   S      ++L  +R M  + +  + YT  A +++C   S   
Sbjct: 70  RMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKK 129

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
           LG  +H  +  S    D++V  ALV  + +   +  A ++FD + +K  + WNSMI+G+ 
Sbjct: 130 LGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFT 189

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG   EA+  F  ++D  + PD  + + +LAA  +LG +  G+ +H + +   LD N+ 
Sbjct: 190 QNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLR 249

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           +  +LI+MY++C  V+ A  +FD M   ++I+WT +I+ Y  +   TEA++L  +++  G
Sbjct: 250 IGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKG 309

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL-----LPGVEHHVCMVDLFGRAG 358
           +  + +   + L AC+       G R  +  ++ +G      L  +     ++D++   G
Sbjct: 310 MDVDTMMIGSTLLACS-------GLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCG 362

Query: 359 LLNEAYKF-----VKDVIGEKPAPAVWTAMLGACKMHK---NFDLGVEVAEHLLSVEPEN 410
            +N A +       KDV+        WT+M+ +C +H    N  LGV       SVEP++
Sbjct: 363 NINYATRMFESIKCKDVVS-------WTSMI-SCYVHNGLANEALGVFYLMKETSVEPDS 414



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 136/237 (57%), Gaps = 1/237 (0%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M V  +   ++TF  V+K+C  +  ++ G  +H  +   GYDS + V  +LV+ YAK N+
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 157 VDVARKVFDRMPDKS-VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
           +  ARK+FDRM +++ VV+WNS+IS Y  NG   EA+GLF  M+  GV  ++ T V  L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           AC       LG  +H  I+     ++V +A +L+ M+ R G +S A  IFD + E + I 
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           W +MI+G+  +G   EA++ F  ++   ++P+ V+ +++L+A    G +  G  + A
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHA 237



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 1/145 (0%)

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           MR  GV  DS T  CVL AC  + DI  G  +H  I+  G D  V +A SL++MYA+C +
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 258 VSKAREIFDMMSELN-VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
           +  AR++FD M+E N V++W ++IS Y ++G   EA+ LF  M+  GV  N  T VA L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLL 341
           AC  +   + G  + A++ +   +L
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVL 145


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/549 (40%), Positives = 334/549 (60%), Gaps = 10/549 (1%)

Query: 41  SMLTKLLSL--VCDAGFITYAQRIFFCIPSPDSFLFNTLI--IRNSKANFSTDSLLFYRR 96
           S+  KLL+   V  +G + YAQ +F  I +P +  +N++I     S +     +++FY  
Sbjct: 431 SISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNH 490

Query: 97  MI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155
           M+  S+  P  YTFS ++K+C         R VH  +   GYD D+ +   L+  YA + 
Sbjct: 491 MLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNG 550

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
            ++ A KVF+ MP + +V+WNSMIS Y Q G  +EA+ +++ MR   V  D  T V +L+
Sbjct: 551 LIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLS 610

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           +CA +G + +G  +H F   + L  N+ +  +LI+MYA+CG+++ A  IF+ M + +V  
Sbjct: 611 SCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFT 670

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           W +MI GYG+HG G EA+  F  M   GVRPN++TF+ +L  C+H GLV+EG + F  M 
Sbjct: 671 WNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMS 730

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
            E+ L PG++H+ CMVDLFGRAG L EA + ++    +   P +W  +LG+CK+H+N ++
Sbjct: 731 SEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHD-PVLWRTLLGSCKIHRNVEI 789

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
           G     +L+ +     G  V+LS IYA A  +  V  +R ++  +G+K   G+S +EV  
Sbjct: 790 GEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGD 849

Query: 456 KNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREY----SLRY 511
           + + F + DKSHP++ EIY+ L+E++ R    GY  E  S +   E   +EY    S  Y
Sbjct: 850 QVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSY 909

Query: 512 HSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKR 571
           HSEKLA+A+GL RT  G ++ IVKNLR+C DCH+  KF+S A +REIIVRDR+RFHHF+ 
Sbjct: 910 HSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSKAFDREIIVRDRVRFHHFRG 969

Query: 572 GSCSCLDYW 580
           G CSC ++W
Sbjct: 970 GHCSCKEFW 978



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 5/287 (1%)

Query: 5   QPHSPAYEAILKAGPRLK---PLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P +  +  +LKA    K     ++VH  +I  GY +   + T L+      G I  A +
Sbjct: 498 RPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHK 557

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P+ D   +N++I    +     ++L  Y +M +SN+    +T  +++ SCAH+  
Sbjct: 558 VFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGA 617

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L++G  +H          ++ V  AL++ YAK  ++  A  +F+ MP + V  WNSMI G
Sbjct: 618 LHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVG 677

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDV 240
           Y  +G   EAI  F  M   GV P+S T + +L  C+  G +  G ++ H       L  
Sbjct: 678 YGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKP 737

Query: 241 NVVLATSLINMYARCGNVSKAREIF-DMMSELNVIAWTAMISGYGMH 286
            +     +++++ R G + +A E+     S+ + + W  ++    +H
Sbjct: 738 GIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIH 784


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/578 (38%), Positives = 335/578 (57%), Gaps = 36/578 (6%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           R  S    +++L    G +  A   F  +   D   +N++I   ++  +   +L  + +M
Sbjct: 210 RDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKM 269

Query: 98  IVSNI-SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           +  ++ SP  +T ++V+ +CA+L  L +G+ +H H+  +G+D    V  AL++ Y++   
Sbjct: 270 LRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGG 329

Query: 157 VDVARK---------------------------------VFDRMPDKSVVAWNSMISGYE 183
           V+ AR+                                 +F  + D+ VVAW +MI GYE
Sbjct: 330 VETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYE 389

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           Q+G   EAI LF  M   G  P+S T   +L+  + L  +  G+ +H   V  G   +V 
Sbjct: 390 QHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVS 449

Query: 244 LATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           ++ +LI MYA+ GN++ A   FD++  E + ++WT+MI     HG+  EA+ELF  M   
Sbjct: 450 VSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLME 509

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+RP+++T+V V SAC HAGLV +G + F  M+    ++P + H+ CMVDLFGRAGLL E
Sbjct: 510 GLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQE 569

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A +F++ +  E P    W ++L AC++HKN DLG   AE LL +EPEN G Y  L+N+Y+
Sbjct: 570 AQEFIEKMPIE-PDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYS 628

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             G+ +    +R  M    +KK  G+S +EV  K ++F + D +HP  NEIY  + ++  
Sbjct: 629 ACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWD 688

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             ++ GYVP++ S +H+LEEE +E  LR+HSEKLA+AFGL+ T    T+RI+KNLR+C D
Sbjct: 689 EIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCND 748

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+AIKFIS    REIIVRD  RFHHFK G CSC DYW
Sbjct: 749 CHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 213/485 (43%), Gaps = 99/485 (20%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           Q VH  +I +G   S  ++  L+++    G+  +A+++F  +P   +F +NT++   SK 
Sbjct: 34  QLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKR 93

Query: 85  NFSTDSLLFYRR-------------------------------MIVSNISPSNYTFSAVI 113
                +  F+ +                               M+   I P+ +T + V+
Sbjct: 94  GDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVL 153

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
            S A    +  G+ VH  +   G   ++ V  +L+N YAK  +  +A+ VFDRM  + + 
Sbjct: 154 ASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDIS 213

Query: 174 AW-------------------------------NSMISGYEQNGFAKEAIGLFN-LMRDF 201
           +W                               NSMISG+ Q G+   A+ +F+ ++RD 
Sbjct: 214 SWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDS 273

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
            ++PD  T   VL+ACA L  + +G+ +H  IV  G D++ ++  +LI+MY+RCG V  A
Sbjct: 274 LLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETA 333

Query: 262 RE---------------------------------IFDMMSELNVIAWTAMISGYGMHGY 288
           R                                  IF  + + +V+AWTAMI GY  HG 
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGS 393

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             EA+ LF  M   G RPN+ T  A+LS  +    +  G ++  S  +  G +  V    
Sbjct: 394 YGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKS-GEIYSVSVSN 452

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
            ++ ++ +AG +  A +   D+I  +     WT+M+ A   H + +  +E+ E +L +E 
Sbjct: 453 ALITMYAKAGNITSASRAF-DLIRCERDTVSWTSMIIALAQHGHAEEALELFETML-MEG 510

Query: 409 ENPGH 413
             P H
Sbjct: 511 LRPDH 515



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 151/337 (44%), Gaps = 72/337 (21%)

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRA--------VHCHVFVSGYDSDLHVQAALVNFYAKS 154
           +P   + S +++ C +L   ++ ++        VHC V  SG    +++   L+N Y+K+
Sbjct: 3   APVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKT 62

Query: 155 NNVDVARKVFDRMPDKSVVAWNS-------------------------------MISGYE 183
                ARK+FD MP ++  +WN+                               MI GY+
Sbjct: 63  GYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYK 122

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
             G   +AI +   M   G+ P   T   VLA+ A    ++ G+ VH FIV  GL  NV 
Sbjct: 123 NIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVS 182

Query: 244 LATSLINMYARCGNVSKAREIFD-------------------------------MMSELN 272
           ++ SL+NMYA+CG+   A+ +FD                                M+E +
Sbjct: 183 VSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           ++ W +MISG+   GY   A+++F +M R   + P+  T  +VLSACA+   +  G ++ 
Sbjct: 243 IVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIH 302

Query: 332 ASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           + +      + G+  +  ++ ++ R G +  A + ++
Sbjct: 303 SHIVTTGFDISGIVLN-ALISMYSRCGGVETARRLIE 338


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/577 (37%), Positives = 335/577 (58%), Gaps = 4/577 (0%)

Query: 7   HSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF 63
           H   +  +LKA  R    +    +H+ ++  G+    + +T LLS+   +G +  A ++F
Sbjct: 110 HGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVF 169

Query: 64  FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123
             IP      +  L    + A    +++  +++M+   + P +Y    V+ +C H+  L+
Sbjct: 170 EEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLD 229

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
            G  +  H+       +  V+  LVN YAK   ++ AR VFD M +K +V W++MI GY 
Sbjct: 230 SGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYA 289

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
            N F KE I  F  M    + PD  + V  L++CA LG +DLG W    I       N+ 
Sbjct: 290 SNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLF 349

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           +A +LI+MYA+CG +++  E+F  M E +++   A ISG   +G+   +  +F +    G
Sbjct: 350 MANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLG 409

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           + P+  TF+ +L  C HAGL+Q+G R F ++   Y L   VEH+ CMVDL+GRAG+L++A
Sbjct: 410 ISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDA 469

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
           Y+ + D +  +P   VW A+L  C++ K+  L   V + L+++EP N G+YV LSNIY++
Sbjct: 470 YRLICD-MPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSV 528

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
           +GR D    VR++M +KG+KK  GYS +E++   + F   DKSHP +++IY  L++L   
Sbjct: 529 SGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNE 588

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
            R  G+VP +E    ++E+EE+E  L +HSEKLA+AFGL+ T  G  IR+VKNLR+C DC
Sbjct: 589 MRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDC 648

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           H  +K IS  T REI+VRD  RFH F  GSCSC DYW
Sbjct: 649 HEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 198/402 (49%), Gaps = 9/402 (2%)

Query: 12  EAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS 71
           + ++        L+QVH  LI         ++  LL          Y+  +F     P+ 
Sbjct: 17  KTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPNI 76

Query: 72  FLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
           FL+NTLI   + N   + + D  L  R+     ++   +TF  V+K+C   S   LG  +
Sbjct: 77  FLYNTLINGFVNNHLFHETLDLFLSIRK---HGLNLHGFTFPLVLKACTRASNRKLGIDL 133

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H  V   G++ D+    +L++ Y+ S  ++ A KVF+ +P++SVV W ++ SGY   G  
Sbjct: 134 HSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKH 193

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
           +EAI LF  M + GV PDS   V VL+AC  +GD+D G W+ + +    +  N  + T+L
Sbjct: 194 REAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTL 253

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           +N+YA+CG + KAR +FD M E +++ W+ MI GY  + +  E +E F +M    ++P+ 
Sbjct: 254 VNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQ 313

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
            + V  LS+CA  G +  G     S+   +  L  +     ++D++ + G +   ++  K
Sbjct: 314 FSIVGFLSSCASLGALDLGEWGI-SLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372

Query: 369 DVIGEKPAPAVWTAMLGACKM-HKNFDLGVEVAEHLLSVEPE 409
           + + EK    +  A+ G  K  H      V      L + P+
Sbjct: 373 E-MKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPD 413


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 323/539 (59%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN 101
           ++   +++  +AG +  A+R+F  +   D   +N +I    +     +++  + R+    
Sbjct: 244 VMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDG 303

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           I  ++ TF  ++     L+ L  G+ +H  V  +GYD D+ V  AL++ Y +      A 
Sbjct: 304 IKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAW 363

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           K+F  M  K V+ W  M   Y QNGF KEA+ LF  M+  G  P S T V VL  CA L 
Sbjct: 364 KIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLA 423

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            +  GR +H  I+  G  + +V+ T+LINMY +CG +++AR +F+ M++ +++ W +M+ 
Sbjct: 424 ALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLG 483

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
            Y  HGY  E ++LF++M+  G + + V+FV+VLSA +H+G V +G++ F +M Q++ + 
Sbjct: 484 AYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSIT 543

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P  E + C+VDL GRAG + EA   V  + G  P   +W  +LGAC+ H   D     AE
Sbjct: 544 PTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAE 603

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
            +L  +P + G YV+LSN+YA AG  D V  +R +M  +G+KK  G S++E+  + + F 
Sbjct: 604 QVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFL 663

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
            GD+SHP  + IY  LD L    R AGY+P+++  +H++E+E +E  L YHSE+LA+AFG
Sbjct: 664 EGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFG 723

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           LM T PG  +R++KNLR+C DCH+A K+IS    REI+VRD  RFH+FK G CSC DYW
Sbjct: 724 LMSTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/492 (26%), Positives = 227/492 (46%), Gaps = 34/492 (6%)

Query: 6   PHSPAYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    Y AIL A      LK   ++H  ++  G+     + T L+++    G +  A   
Sbjct: 104 PTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDS 163

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   D   +  +I    + +    +   YRRM +  + P+  T   V  +      L
Sbjct: 164 FKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYL 223

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           + G+ ++  V     +SD+ V  + +N +  +  +  AR++F+ M D+ VV WN +I+ Y
Sbjct: 224 SEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFY 283

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            QN    EA+ LF  ++  G+  +  T V +L     L  +  G+ +HE +   G D +V
Sbjct: 284 VQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDV 343

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           V+AT+L+++Y RC    +A +IF  M   +VI WT M   Y  +G+  EA++LF  M+  
Sbjct: 344 VVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLE 403

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G RP + T VAVL  CAH   +Q+G ++ + +  E G    +     +++++G+ G + E
Sbjct: 404 GRRPTSATLVAVLDTCAHLAALQKGRQIHSHI-IENGFRMEMVVETALINMYGKCGKMAE 462

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A    + +   K    VW +MLGA   H  +D  +++    + ++ E       +S + A
Sbjct: 463 ARSVFEKM--AKRDILVWNSMLGAYAQHGYYDETLQLFNQ-MQLDGEKADAVSFVSVLSA 519

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM-GDKSHPNTNEIYQYLDELM 481
           L+                    H G  T   D   Y  +M  D S   T E+Y  + +L+
Sbjct: 520 LS--------------------HSGSVT---DGYQYFVAMLQDFSITPTPELYGCVVDLL 556

Query: 482 GRCREAGYVPES 493
           GR   AG + E+
Sbjct: 557 GR---AGRIQEA 565



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 171/348 (49%), Gaps = 4/348 (1%)

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P    F A+++ C+    ++ GR VH HV   G++ +  V   L+  YA+  +V  A++V
Sbjct: 3   PDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 62

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F+ +  K V AW  MI  Y Q G    A+G+F  M++  V P   T V +L ACA    +
Sbjct: 63  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 122

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
             G  +H  I+ QG + +V + T+LINMY +CG+V  A + F  +   +V++WTAMI+  
Sbjct: 123 KDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAAC 182

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
             H     A  L+ RM+  GV PN +T   V +A      + EG  ++ S+     +   
Sbjct: 183 VQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIY-SLVSSRVMESD 241

Query: 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
           V      +++FG AGLL +A +  +D++        W  ++     ++NF   V +   L
Sbjct: 242 VRVMNSAMNMFGNAGLLGDARRLFEDMVDRD--VVTWNIVITFYVQNENFGEAVRLFGRL 299

Query: 404 LSVE-PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
                  N   +V++ N+Y     + + +V+  ++ + G  + V  +T
Sbjct: 300 QQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVAT 347



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 215/480 (44%), Gaps = 48/480 (10%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P +  + A+L+     K +   ++VH H+   G+ ++  +   L+ +    G +  AQ+
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 62  IFFCIPSPDSFLFNTLI-IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           +F  +   D F +  +I I   + ++     +FY+ M   ++ P+  T+ A++ +CA   
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQ-MQEEDVMPTKVTYVAILNACASTE 120

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L  G  +H  +   G++ D+ V  AL+N Y K  +V  A   F R+  + VV+W +MI+
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
              Q+     A  L+  M+  GV P+  T   V  A      +  G++++  +  + ++ 
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMES 240

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +V +  S +NM+   G +  AR +F+ M + +V+ W  +I+ Y  +    EAV LF R++
Sbjct: 241 DVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQ 300

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G++ N++TFV +L+       + +G +V   + +E G    V     ++ L+GR    
Sbjct: 301 QDGIKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDVVVATALMSLYGRCEAP 359

Query: 361 NEAYK-FV----KDVI----------------------------GEKPAPAVWTAMLGAC 387
            +A+K FV    KDVI                            G +P  A   A+L  C
Sbjct: 360 GQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTC 419

Query: 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVM-----LSNIYALAGRMDRVEVVRNIMIQKGL 442
                   G ++  H++    EN     M     L N+Y   G+M     V   M ++ +
Sbjct: 420 AHLAALQKGRQIHSHII----ENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDI 475


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/556 (37%), Positives = 325/556 (58%), Gaps = 2/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + VH   + A      +    LL +    G +  A  +F  +       + +LI   ++ 
Sbjct: 18  RAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYARE 77

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             S +++  +  M    +SP  +T + V+ +CA    L  G+ VH ++  +   S++ V 
Sbjct: 78  GLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVC 137

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL++ YAK  +++ A  VF  MP K +++WN+MI GY +N    EA+ LF  M    + 
Sbjct: 138 NALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMV-LEMK 196

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD TT  C+L ACA L  +D G+ VH  I+  G   +  +A +L++MY +CG    AR +
Sbjct: 197 PDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLL 256

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FDM+   ++I WT MI+GYGMHG+G  A+  F+ MR  G+ P+ V+F+++L AC+H+GL+
Sbjct: 257 FDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLL 316

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG R F  M+ E  + P +EH+ C+VDL  R+G L  AYKF+K +  E P   +W A+L
Sbjct: 317 DEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIE-PDATIWGALL 375

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
             C++H +  L  +VAEH+  +EPEN G+YV+L+N YA A + + V+ +R  + ++GLKK
Sbjct: 376 SGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKK 435

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
           + G S +EV  K ++F  G+ SHP   +I   L  L  + +E GY P++  A+   +  +
Sbjct: 436 NPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQ 495

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E +L  HSEKLA+AFG++   P  TIR+ KNLR+C DCH   KFIS    REI++RD  
Sbjct: 496 KETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSN 555

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHFK G C C  +W
Sbjct: 556 RFHHFKDGVCCCRGFW 571



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 149/284 (52%), Gaps = 12/284 (4%)

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA----ALVNFYAKSNNVDVARKVFDR 166
           +++++CA+   ++LGRAVH     SG  + +H +      L++ YAK   +D A  VFD 
Sbjct: 3   SILQACANCGDVSLGRAVH----GSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDL 58

Query: 167 MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
           M  ++VV W S+I+ Y + G + EAI LF+ M   GV+PD  T   VL ACA  G ++ G
Sbjct: 59  MSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENG 118

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
           + VH +I    +  N+ +  +L++MYA+CG++  A  +F  M   ++I+W  MI GY  +
Sbjct: 119 KDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKN 178

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
               EA+ LF  M    ++P+  T   +L ACA    +  G  V   + +  G     + 
Sbjct: 179 SLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRN-GFFSDQQV 236

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
              +VD++ + G+   A + + D+I  K     WT M+    MH
Sbjct: 237 ANALVDMYVKCGVPVLA-RLLFDMIPTKDL-ITWTVMIAGYGMH 278



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 15/238 (6%)

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           V +L ACA  GD+ LGR VH   V   +        +L++MYA+CG +  A  +FD+MS 
Sbjct: 2   VSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSV 61

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
             V+ WT++I+ Y   G   EA+ LFH M   GV P+  T   VL ACA  G ++ G  V
Sbjct: 62  RTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDV 121

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEKPAPAVWTAMLG 385
              +R E  +   +     ++D++ + G + +A        VKD+I        W  M+G
Sbjct: 122 HNYIR-ENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIIS-------WNTMIG 173

Query: 386 ACKMHKNFDLGVEV-AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
               +   +  + +  + +L ++P+      +L    +LA  +DR + V   +++ G 
Sbjct: 174 GYSKNSLPNEALSLFGDMVLEMKPDGTTLACILPACASLAS-LDRGKEVHGHILRNGF 230



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 78/182 (42%), Gaps = 5/182 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P       IL A   L  L   ++VH H++  G+   + +   L+ +    G    A+ 
Sbjct: 196 KPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARL 255

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  IP+ D   +  +I       F  +++  +  M  + I P   +F +++ +C+H  +
Sbjct: 256 LFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGL 315

Query: 122 LNLG-RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMI 179
           L+ G R  +           L   A +V+  A+S  + +A K    MP +     W +++
Sbjct: 316 LDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALL 375

Query: 180 SG 181
           SG
Sbjct: 376 SG 377


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/596 (34%), Positives = 353/596 (59%), Gaps = 16/596 (2%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFI 56
           ++  +P      ++L A   L+ L   +++HA+ +  G     S + + L+ + C+   +
Sbjct: 291 LEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 350

Query: 57  TYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKS 115
               R+F  +      L+N +I   ++  +  ++LL +  M  S  +  ++ T + V+ +
Sbjct: 351 LSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPA 410

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           C      +   A+H  V   G D D  VQ AL++ Y++   +D+A+++F +M D+ +V W
Sbjct: 411 CVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTW 470

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDF-----------GVNPDSTTCVCVLAACAQLGDID 224
           N++I+GY  +   ++A+ + + M+              + P+S T + +L +CA L  + 
Sbjct: 471 NTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALA 530

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
            G+ +H + +   L  +V + ++L++MYA+CG +  +R++FD +   NVI W  ++  YG
Sbjct: 531 KGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYG 590

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
           MHG   +A+++   M   GV+PN VTF++V +AC+H+G+V EG ++F +M+++YG+ P  
Sbjct: 591 MHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSS 650

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           +H+ C+VDL GRAG + EAY+ +  +         W+++LGAC++H N ++G   A++L+
Sbjct: 651 DHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLI 710

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
            +EP    HYV+L+NIY+ AG   +   VR  M  +G++K  G S +E   + + F  GD
Sbjct: 711 QLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGD 770

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
            SHP + ++  YL+ L  R R+ GY+P++   +H +EE+E+E  L  HSEKLA+AFG++ 
Sbjct: 771 SSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILN 830

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           TSPG  IR+ KNLR+C DCH A KFIS   +REII+RD  RFHHFK G+CSC DYW
Sbjct: 831 TSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 203/409 (49%), Gaps = 22/409 (5%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVHA+ +  G   S  ++  L+++    G +  ++ +       D   +NT++    + 
Sbjct: 218 KQVHAYGLRKGELNS-FIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQN 276

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG-YDSDLHV 143
               ++L + R M++  + P  +T S+V+ +C+HL +L  G+ +H +   +G  D +  V
Sbjct: 277 EQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 336

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD-FG 202
            +ALV+ Y     V    +VFD M D+ +  WN+MI+GY QN + +EA+ LF  M +  G
Sbjct: 337 GSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAG 396

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           +  +STT   V+ AC + G       +H F+V +GLD +  +  +L++MY+R G +  A+
Sbjct: 397 LLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAK 456

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM---------RAHGV--RPNNVTF 311
            IF  M + +++ W  +I+GY       +A+ + H+M         RA  V  +PN++T 
Sbjct: 457 RIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITL 516

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           + +L +CA    + +G  + A   +   L   V     +VD++ + G L  + K    V 
Sbjct: 517 MTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRK----VF 571

Query: 372 GEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
            + P   V  W  ++ A  MH N    +++   ++ V+   P     +S
Sbjct: 572 DQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMM-VQGVKPNEVTFIS 619



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 143/272 (52%), Gaps = 13/272 (4%)

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
           SP+ ++   L+    ++N   +++L Y  MIV  I P N+ F A++K+ A L  ++LG+ 
Sbjct: 57  SPEWWI--DLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQ 114

Query: 128 VHCHVFVSGYDSD-LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS---GYE 183
           +H HV+  GY  D + V   LVN Y K  +     KVFDR+ +++ V+WNS+IS    +E
Sbjct: 115 IHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFE 174

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG---DIDLGRWVHEFIVGQGLDV 240
           +   A EA   F  M D  V P S T V V  AC+       + +G+ VH + + +G ++
Sbjct: 175 KWEMALEA---FRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-EL 230

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           N  +  +L+ MY + G ++ ++ +       +++ W  ++S    +    EA+E    M 
Sbjct: 231 NSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMV 290

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
             GV P+  T  +VL AC+H  +++ G  + A
Sbjct: 291 LEGVEPDGFTISSVLPACSHLEMLRTGKELHA 322



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 160/327 (48%), Gaps = 10/327 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYG-RSRSMLTKLLSLVCDAGFITYAQ 60
           +P + A+ A+LKA   L+ +   +Q+HAH+   GYG  S ++   L++L    G      
Sbjct: 90  KPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVY 149

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           ++F  I   +   +N+LI           +L  +R M+  ++ PS++T  +V  +C++  
Sbjct: 150 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFP 209

Query: 121 I---LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
           +   L +G+ VH +    G + +  +   LV  Y K   +  ++ +      + +V WN+
Sbjct: 210 MPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNT 268

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           ++S   QN    EA+     M   GV PD  T   VL AC+ L  +  G+ +H + +  G
Sbjct: 269 VLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNG 328

Query: 238 -LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
            LD N  + ++L++MY  C  V     +FD M +  +  W AMI+GY  + Y  EA+ LF
Sbjct: 329 SLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLF 388

Query: 297 HRM-RAHGVRPNNVTFVAVLSACAHAG 322
             M  + G+  N+ T   V+ AC  +G
Sbjct: 389 IEMEESAGLLANSTTMAGVVPACVRSG 415



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 118/246 (47%), Gaps = 20/246 (8%)

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI- 233
           W  ++    ++   +EA+  +  M   G+ PD+     +L A A L D+DLG+ +H  + 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 234 -VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
             G G+D +V +A +L+N+Y +CG+     ++FD +SE N ++W ++IS          A
Sbjct: 121 KFGYGVD-SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 179

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAH----AGLVQEGHRVFASMRQEYGLLPGVEHHV 348
           +E F  M    V P++ T V+V  AC++     GL+  G +V A     YGL  G  +  
Sbjct: 180 LEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLM-GKQVHA-----YGLRKGELNSF 233

Query: 349 ---CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL- 404
               +V ++G+ G L  +   +    G       W  +L +   ++ F   +E    ++ 
Sbjct: 234 IINTLVAMYGKMGKLASSKVLLGSFEGRD--LVTWNTVLSSLCQNEQFLEALEYLREMVL 291

Query: 405 -SVEPE 409
             VEP+
Sbjct: 292 EGVEPD 297


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/566 (37%), Positives = 341/566 (60%), Gaps = 3/566 (0%)

Query: 17  AGPRLKPL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFN 75
           A  RL  L + VH+  + A + R       LL +    G +  A+ +F  +       + 
Sbjct: 156 ADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYT 215

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
           ++I   ++   + +++  +  M    ISP  YT +AV+  CA   +L+ G+ VH  +  +
Sbjct: 216 SMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN 275

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
               D+ V  AL++ YAK  ++  A  VF  M  K +++WN++I GY +N +A EA+ LF
Sbjct: 276 DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLF 335

Query: 196 NLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           NL+  +   +PD  T  CVL ACA L   D GR +H +I+  G   +  +A SL++MYA+
Sbjct: 336 NLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAK 395

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CG +  A  +FD ++  ++++WT MI+GYGMHG+G EA+ LF++MR  G+  + ++FV++
Sbjct: 396 CGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSL 455

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L AC+H+GLV EG R F  MR E  + P VEH+ C+VD+  R G L +AY+F+++ +   
Sbjct: 456 LYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIEN-MPIP 514

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P   +W A+L  C++H +  L  +VAE +  +EPEN G+YV+++NIYA A + ++V+ +R
Sbjct: 515 PDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLR 574

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
             + Q+GL+K+ G S +E+  +  +F  GD S+P T  I  +L ++  R  E GY P ++
Sbjct: 575 KRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTK 634

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
            A+ + EE E+E +L  HSEKLA+A G++ +  G  IR+ KNLR+C DCH   KF+S  T
Sbjct: 635 YALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLT 694

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
            REI++RD  RFH FK G CSC  +W
Sbjct: 695 RREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 174/322 (54%), Gaps = 15/322 (4%)

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
           +  +N L+   +K+   + S+  +++M+ S +   +YTFS V KS + L  ++ G  +H 
Sbjct: 9   ALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHG 68

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
            +  SG+     V  +LV FY K+  VD ARKVFD M ++ V++WNS+I+GY  NG A++
Sbjct: 69  FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 128

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
            + +F  M   G+  D  T V V A CA    I LGR VH   V            +L++
Sbjct: 129 GLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLD 188

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MY++CG++  A+ +F  MS+ +V+++T+MI+GY   G   EAV+LF  M   G+ P+  T
Sbjct: 189 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 248

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQ-EYGLLPGVEHHVCMVDLFGRAGLLNEAYKF--- 366
             AVL+ CA   L+ EG RV   +++ + G    V +   ++D++ + G + EA      
Sbjct: 249 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSE 306

Query: 367 --VKDVIGEKPAPAVWTAMLGA 386
             VKD+I        W  ++G 
Sbjct: 307 MRVKDIIS-------WNTIIGG 321



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 187/370 (50%), Gaps = 10/370 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H  ++ +G+G   S+   L++       +  A+++F  +   D   +N++I      
Sbjct: 64  EQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSN 123

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             +   L  + +M+VS I     T  +V   CA   +++LGRAVH     + +  +    
Sbjct: 124 GLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC 183

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             L++ Y+K  ++D A+ VF  M D+SVV++ SMI+GY + G A EA+ LF  M + G++
Sbjct: 184 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 243

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD  T   VL  CA+   +D G+ VHE+I    L  ++ ++ +L++MYA+CG++ +A  +
Sbjct: 244 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 303

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFH-RMRAHGVRPNNVTFVAVLSACAHAGL 323
           F  M   ++I+W  +I GY  + Y  EA+ LF+  +      P+  T   VL ACA    
Sbjct: 304 FSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 363

Query: 324 VQEGHRVFAS-MRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
             +G  +    MR  Y      + HV   +VD++ + G L  A+    D+  +      W
Sbjct: 364 FDKGREIHGYIMRNGY----FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVS--W 417

Query: 381 TAMLGACKMH 390
           T M+    MH
Sbjct: 418 TVMIAGYGMH 427



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 39/306 (12%)

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           FD +  +  + WN +++   ++G    +IGLF  M   GV  DS T  CV  + + L  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
             G  +H FI+  G      +  SL+  Y +   V  AR++FD M+E +VI+W ++I+GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA----------- 332
             +G   + + +F +M   G+  +  T V+V + CA + L+  G  V +           
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 333 -------SMRQEYGLLP------------GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
                   M  + G L              V  +  M+  + R GL  EA K  +++  E
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 374 KPAPAVW--TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN----IYALAGRM 427
             +P V+  TA+L  C  ++  D G  V E    ++  + G  + +SN    +YA  G M
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEW---IKENDLGFDIFVSNALMDMYAKCGSM 297

Query: 428 DRVEVV 433
              E+V
Sbjct: 298 QEAELV 303


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/614 (36%), Positives = 350/614 (57%), Gaps = 40/614 (6%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF-- 63
           P+   +  +L   P+L PLQQ+HA ++      + S+   L+     A     A+ +F  
Sbjct: 72  PNPQTFSLLLNQRPKLSPLQQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDH 131

Query: 64  FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN----ISPSNYTFSAVIKSCAHL 119
           +  PSP   L+N +I   SK   S + +  + RM+  +    + P  YTF+ VI SC+H 
Sbjct: 132 YPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQ 191

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             L  G  VH  V  SG++S+L+V  +++N  +    ++ ARKVF++M ++ V +W S++
Sbjct: 192 ISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLL 251

Query: 180 SGYEQNGFAKEAIGLFNLMR--------------------------------DFGVNPDS 207
            GY ++G    A  LFN+M                                 D  VNP+ 
Sbjct: 252 GGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNE 311

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
              VCVL+ACA LG +D G W+H +I   G+  +  ++T+LI+MYA+CG +  A  +F+ 
Sbjct: 312 AVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNG 371

Query: 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG 327
           + + +V+++T+MISG   HG G +A+ +F++M    V PN +T + VL+ C+H+GLV+EG
Sbjct: 372 ICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEG 431

Query: 328 HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
             + A+M   +G+ P +EH+ C +DL GRAG L  A + VK +  E P   +W A+L A 
Sbjct: 432 SSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPME-PDIVIWRALLSAS 490

Query: 388 KMHKNFDLGVEVAEHLLSVEP-ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           ++H N +LG ++  H+  ++  ++ G  V+LSN+YA  GR +RV  +R +M+ +  +   
Sbjct: 491 RIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSP 550

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
           G S +EV+   + F + D+ HP   EI   L+E++ R  + GY   +     +L EEE+E
Sbjct: 551 GCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKE 610

Query: 507 YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
            ++ +HSEKLA+AFGLM T PG  IRIVKNLR C DCHSA+K IS    REI+VRDR RF
Sbjct: 611 QAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRF 670

Query: 567 HHFKRGSCSCLDYW 580
           H F  G CSC D+W
Sbjct: 671 HTFIEGDCSCKDFW 684


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/600 (36%), Positives = 345/600 (57%), Gaps = 24/600 (4%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIV-AGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           +P    + + L A  RL+ L   +++HA ++  A    +  + + L+ +      +  A+
Sbjct: 279 RPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASAR 338

Query: 61  RIFFCIPSPDSFL--FNTLIIRNSKANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCA 117
           R+F  +P P   L  +N +I   ++A    ++L  + RM   +  +PS  T S V+ +CA
Sbjct: 339 RVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACA 398

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
                    A+H +V   G   +  VQ AL++ YA+   +DVAR++F  +  + VV+WN+
Sbjct: 399 RSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNT 458

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVN----------------PDSTTCVCVLAACAQLG 221
           +I+G    G A EA  L   M+    +                P++ T + +L  CA L 
Sbjct: 459 LITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALA 518

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
               G+ +H + V   L+ ++ + ++L++MYA+CG ++ +R +FD +   NVI W  +I 
Sbjct: 519 APARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIM 578

Query: 282 GYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
            YGMHG G EAV LF  M A G   PN VTF+A L+AC+H+GLV  G  +F  M +++G+
Sbjct: 579 AYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGV 638

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P  + H C+VD+ GRAG L+EAY  +  +   +   + W+++LGAC++H+N +LG   A
Sbjct: 639 KPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAA 698

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           E L  +EP    HYV+L NIY+ AG  D+   VR  M ++G+ K  G S +E+D   + F
Sbjct: 699 ERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRF 758

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
             G+ SHP + E++ ++D L  R R  GY P++   +H+++E+E+   LRYHSEKLA+AF
Sbjct: 759 MAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAF 818

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+R  PG  IR+ KNLR+C DCH A KF+S    R+I++RD  RFHHF+ GSCSC DYW
Sbjct: 819 GLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 140/525 (26%), Positives = 233/525 (44%), Gaps = 56/525 (10%)

Query: 25  QQVHAHLIVAGY---GRSRSMLTKLLSLVCDAGFITYAQRIF------FCIPSPDSFLFN 75
           ++ HA  +  G+   GR R     LLS+    G +  AQ +F      F     D   +N
Sbjct: 192 REAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWN 251

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
           T+I    +     +++     M+   + P   TF++ + +C+ L +L LGR +H  V   
Sbjct: 252 TMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVL-- 309

Query: 136 GYDSDL----HVQAALVNFYAKSNNVDVARKVFDRMPDKS--VVAWNSMISGYEQNGFAK 189
             D+DL     V +ALV+ YA +  V  AR+VFD +P+ S  +  WN+MI GY Q G  +
Sbjct: 310 -KDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDE 368

Query: 190 EAIGLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
           EA+ LF+ M  + G  P  TT   VL ACA+         +H ++V +G+  N  +  +L
Sbjct: 369 EALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNAL 428

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR-------- 300
           ++MYAR G +  AR IF M+   +V++W  +I+G  + G+  EA +L   M+        
Sbjct: 429 MDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSS 488

Query: 301 --------AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV---- 348
                   AH   PNN+T + +L  CA       G  +       Y +   +E  +    
Sbjct: 489 SSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHG-----YAVRHALESDIAVGS 543

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
            +VD++ + G L  A + V D +  +     W  ++ A  MH   D  V + + + +   
Sbjct: 544 ALVDMYAKCGCL-AASRAVFDRLPRRNV-ITWNVLIMAYGMHGLGDEAVALFDEMAAGGE 601

Query: 409 ENPGHYVMLSNIYAL--AGRMDR-VEVVRNIMIQKGLKKHVGYSTVEVD------QKNYL 459
             P     ++ + A   +G +DR +E+   +    G+K         VD      + +  
Sbjct: 602 ATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEA 661

Query: 460 FSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
           +S+     P   ++  +   L+G CR    V   E A   L E E
Sbjct: 662 YSIITSMEPGEQQVSAW-SSLLGACRLHRNVELGEVAAERLFELE 705



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 118/233 (50%), Gaps = 16/233 (6%)

Query: 105 SNYTFSAVIKSCAHLSILN---LGRAVHCHVFVSGYDSDLHVQ---AALVNFYAKSNNVD 158
           S++T  +V+ +C+HL   +   LGR  H      G+  +   +    AL++ YA+   VD
Sbjct: 168 SSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVD 227

Query: 159 VARKVFDRMP------DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVC 212
            A+ +F             VV WN+MIS   Q G   EA+ +   M   GV PD  T   
Sbjct: 228 DAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFAS 287

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQG-LDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
            L AC++L  + LGR +H  ++    L  N  +A++L++MYA    V+ AR +FDM+ E 
Sbjct: 288 ALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEP 347

Query: 272 N--VIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHA 321
           +  +  W AMI GY   G   EA+ELF RM A  G  P+  T   VL ACA +
Sbjct: 348 SRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARS 400



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 25/234 (10%)

Query: 170 KSVVAWNSMISG---YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID-- 224
           +  V++NS+IS    + Q   A +A  L +++ +   +  S T V VL AC+ L   D  
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDA--LRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGR 188

Query: 225 -LGRWVHEFIVGQG-LDVNV--VLATSLINMYARCGNVSKAREIFDMMSEL------NVI 274
            LGR  H F + +G LD         +L++MYAR G V  A+ +F   +        +V+
Sbjct: 189 RLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVV 248

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
            W  MIS     G   EAVE+ + M + GVRP+ VTF + L AC+   ++  G  + A +
Sbjct: 249 TWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVV 308

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA----VWTAML 384
            ++  L         +VD++  AG  NE     + V    P P+    +W AM+
Sbjct: 309 LKDADLAANSFVASALVDMY--AG--NEKVASARRVFDMVPEPSRQLGMWNAMI 358


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/566 (38%), Positives = 323/566 (57%), Gaps = 32/566 (5%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           ++ L    G +  A ++F  +   D   ++ LI    +     ++L+ ++ M  + I   
Sbjct: 229 MIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVD 288

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYA------------- 152
                +V+ +C+ L ++  G+ VH  V   G ++ +++Q AL++ Y+             
Sbjct: 289 EVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFS 348

Query: 153 ------------------KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
                             K   ++ AR +FD MPDK  V+W++MISGY Q     E + L
Sbjct: 349 ESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVL 408

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           F  M+  G  PD T  V V++AC  L  +D G+W+H +I   GL +N++L T+LINMY +
Sbjct: 409 FQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMK 468

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
            G V  A E+F  + E  V  W A+I G  M+G   ++++ F  M+ HGV PN +TFVAV
Sbjct: 469 LGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAV 528

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L AC H GLV EGHR F SM QE+ + P ++H+ CMVDL GRAG+L EA + ++  +   
Sbjct: 529 LGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIES-MPMA 587

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P  + W A+LGACK + + + G  +   L+ + P++ G  V+LSNIYA  G    V  VR
Sbjct: 588 PDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVR 647

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
            +M Q G+ K  G S +E   + + F  GDK+HP    I   LDE+  + +  GY P++ 
Sbjct: 648 GMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTR 707

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
               +++EEE+E +L  HSEKLA+AFGL+   P   IRIVKNLR+C DCH+A K IS A 
Sbjct: 708 EVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAF 767

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
           NREI+VRDR RFHHFK+GSCSC+DYW
Sbjct: 768 NREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 127/493 (25%), Positives = 223/493 (45%), Gaps = 102/493 (20%)

Query: 9   PAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ--RIFFCI 66
           P  E  L+    +K   Q+ + +I++G+ +     ++LL    +  FI   Q  +IF  I
Sbjct: 27  PILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHI 86

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
            +P+ F+ NT++    + N    ++  Y+ M+ SN++  NYT+  + +SC+       G+
Sbjct: 87  ENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGK 146

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF---------------------- 164
            +  HV   G+DSD+++Q  L+N YA   N+  ARKVF                      
Sbjct: 147 CIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVG 206

Query: 165 ---------DRMPDKSVVA-------------------------------WNSMISGYEQ 184
                    DRMP+++V+A                               W+++IS YEQ
Sbjct: 207 NVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQ 266

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           N   +EA+ LF  M   G+  D    + VL+AC++L  +  G+ VH  +V  G++  V L
Sbjct: 267 NEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNL 326

Query: 245 ATSLINMYA-------------------------------RCGNVSKAREIFDMMSELNV 273
             +LI+MY+                               +CG + KAR +FD M + + 
Sbjct: 327 QNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDN 386

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
           ++W+AMISGY      TE + LF  M+  G +P+    V+V+SAC H   + +G  + A 
Sbjct: 387 VSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAY 446

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH--- 390
           +R+  GL   +     +++++ + G + +A +  K +  E+   + W A++    M+   
Sbjct: 447 IRKN-GLKINIILGTTLINMYMKLGCVEDALEVFKGL--EEKGVSTWNALILGLAMNGLV 503

Query: 391 -KNFDLGVEVAEH 402
            K+     E+ EH
Sbjct: 504 DKSLKTFSEMKEH 516


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/602 (36%), Positives = 340/602 (56%), Gaps = 46/602 (7%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF---ITYAQRIFFCIPSPDSFLFNTL 77
           +  L+Q H+ +I  G      ++  L++    A     +TYA ++F  IP PD+FL+NT+
Sbjct: 35  MSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTI 94

Query: 78  I--IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
           I    +S+   +   LL Y  M+ +++ P+N+TF +++ +C  +     G  +H H+F  
Sbjct: 95  IKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKI---QHGMQIHAHLFKF 151

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G+ +      +L++ Y     ++ AR+VF  +P    V+W S+ISGY + G   EA  +F
Sbjct: 152 GFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIF 211

Query: 196 NLMRDFGVNP--------------------------------DSTTCVCVLAACAQLGDI 223
            LM                                       D      +L+AC  LG +
Sbjct: 212 QLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGAL 271

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN--VIAWTAMIS 281
           D G+W+HE+I   G++++  L T++++MY +CG + KA ++F  +      + +W  MI 
Sbjct: 272 DQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIG 331

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           G  MHG G  A++LF  M    V P+++TF+ +L+ACAH+GLV+EG   F+ M + YG+ 
Sbjct: 332 GLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIE 391

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P +EH  CMVDL GRAG++ EA K + D +   P   V   +LGACK H+N +LG E+  
Sbjct: 392 PRMEHFGCMVDLLGRAGMVPEARKLI-DEMPVSPDVTVLGTLLGACKKHRNIELGEEIGR 450

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
            ++ +EP N G YV+L+N+YA AG+ +    VR +M  +G+KK  G+S +E+    + F 
Sbjct: 451 RVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFI 510

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL---EEEEREYSLRYHSEKLAL 518
            G+++HP   E++  + E++   +  GYV ++   +H     EEE+ E  L YHSEKLA+
Sbjct: 511 AGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDGENPLYYHSEKLAI 570

Query: 519 AFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLD 578
           AFGL RT PG T+RI+KNLR+C DCH A K IS   +REIIVRDR RFH FK G CSC D
Sbjct: 571 AFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTRFHRFKMGQCSCQD 630

Query: 579 YW 580
           YW
Sbjct: 631 YW 632



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 158/361 (43%), Gaps = 37/361 (10%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P++  + ++L A  +++   Q+HAHL   G+G     L  L+ +      +  A+R+F  
Sbjct: 123 PNNFTFPSLLIACRKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHT 182

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS---------- 115
           IP PDS  + +LI   SK     ++   ++ M   N +  N   +A +++          
Sbjct: 183 IPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALF 242

Query: 116 ----------------------CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153
                                 C  L  L+ G+ +H ++  +G + D  +  A+V+ Y K
Sbjct: 243 DRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCK 302

Query: 154 SNNVDVARKVFDR--MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
              ++ A +VF    +P + + +WN MI G   +G  + AI LF  M    V PD  T +
Sbjct: 303 CGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFL 362

Query: 212 CVLAACAQLGDIDLGRWVHEFIVG-QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
            +L ACA  G ++ GR    +++   G++  +     ++++  R G V +AR++ D M  
Sbjct: 363 NLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPV 422

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGHR 329
              +     + G        E  E   R R   + PNN   +V + +  A+AG  ++  +
Sbjct: 423 SPDVTVLGTLLGACKKHRNIELGEEIGR-RVIELEPNNSGRYVLLANLYANAGKWEDAAK 481

Query: 330 V 330
           V
Sbjct: 482 V 482


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/558 (39%), Positives = 341/558 (61%), Gaps = 3/558 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           Q+VH H+I   Y  S  + T+L+ L      +  A+ +F  +P  +   +  +I   S+ 
Sbjct: 110 QRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQR 169

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            F+ ++L  +  M+ S+  P+++TF+ ++ SC        GR +H       Y+S + V 
Sbjct: 170 GFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVG 229

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ++L++ YAKS  +  A  VF  +P++ VVA  ++ISGY Q G  +EA+ LF  ++  G+N
Sbjct: 230 SSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMN 289

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +S T   VL A + L  ++ G+ VH  ++  G    VVL  SLI+MY++CGNV  AR I
Sbjct: 290 SNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRI 349

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGL 323
           FD M E   I+W AM+ GY  HG   E +ELF  MR    V+P+++T++AVLS C+H  L
Sbjct: 350 FDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQL 409

Query: 324 VQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
              G  +F +M   + G+ P + H+ C+VDL GRAG + EA+ F+K  +   P  A+W +
Sbjct: 410 EDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKK-MPFVPTAAIWGS 468

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LG+C++H + ++G+ V + LL +EPEN G+YV+LSN+YA AG+ + +  +R++M +K +
Sbjct: 469 LLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAV 528

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
            K  G S VE+DQ  + F   D +HP   E+ + + EL  + +E GYVP+    +++++E
Sbjct: 529 TKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDE 588

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           E++E  L  HSEKLALAFGL+ T  G TIR++KNLR+CVDCHS  KF+S    R +I+RD
Sbjct: 589 EQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRD 648

Query: 563 RLRFHHFKRGSCSCLDYW 580
           + RFH+   G CSC DYW
Sbjct: 649 KNRFHNIVGGVCSCGDYW 666



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 178/364 (48%), Gaps = 52/364 (14%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           +  ++  C     +  G+ VH H+  + Y   ++++  L+  Y K + +  AR++FD MP
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
            K+VV+W +MIS Y Q GFA EA+ LF  M      P+  T   +L +C      + GR 
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 212

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H   + +  + ++ + +SL++MYA+ G +  A  +F  + E +V+A TA+ISGY   G 
Sbjct: 213 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 272

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACA-----------HAGLVQEGH--------- 328
             EA++LF +++  G+  N+VT+ +VL+A +           H+ +++ G          
Sbjct: 273 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS 332

Query: 329 ---------------RVFASMRQEY-----GLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
                          R+F SM +        +L G   H       G A  + E +K ++
Sbjct: 333 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKH-------GMAREVLELFKLMR 385

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS----VEPENPGHYVMLSNIYALA 424
           +    KP    + A+L  C   +  D+G+E+  ++++    +EP + GHY  + ++   A
Sbjct: 386 EENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEP-DIGHYGCVVDLLGRA 444

Query: 425 GRMD 428
           GR++
Sbjct: 445 GRVE 448


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/587 (36%), Positives = 335/587 (57%), Gaps = 32/587 (5%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H H++  G   +  + T L+ +    G +  A+ +F   P  D   +N +I   +K 
Sbjct: 159 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 218

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +S   +  M    + P+  T   V+ +C+ L  L  G+ VH +V     +S+L ++
Sbjct: 219 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLE 278

Query: 145 AALVNFYAKS-------------NN------------------VDVARKVFDRMPDKSVV 173
            A+++ YA               NN                  +DVAR  FD+MP+K  V
Sbjct: 279 NAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYV 338

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           +W +MI GY ++   KEA+ LF  M+   V PD  T V VL ACA LG ++LG W+  +I
Sbjct: 339 SWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYI 398

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
               +  ++ +  +LI+MY +CG+V KA  IF  MS+ +   WTAMI G  ++G+G +A+
Sbjct: 399 DRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKAL 458

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           ++F  M    + P+ +T++ VLSAC H GLV +G + F  M  ++G+ P + H+ C+VDL
Sbjct: 459 DMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDL 518

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
             RAG L EAY+ +++ +  K    VW A+L  C++++  D+   V + +L +EP+N   
Sbjct: 519 LARAGRLKEAYEVIEN-MPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAV 577

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+L NIYA   R + +  +R +M+ KG+KK  G S +E++ + + F  GD+SHP T  I
Sbjct: 578 YVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNI 637

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
              LD++    + AGY P+      ++ EE++E S+  HSEKLA+AFGL+ + PG+TIRI
Sbjct: 638 DAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRI 697

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLRMC+DCH+  K +S   NRE+IVRDR RFHHFK G CSC DYW
Sbjct: 698 TKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 142/509 (27%), Positives = 236/509 (46%), Gaps = 72/509 (14%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITY 58
           +K+  P +    ++L+    +  LQQVH   I  G   +  +  ++++  C  + G   Y
Sbjct: 32  LKSFSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQY 91

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+R+F  IP P+ F++NT+I   S+ +F    +  Y  M+   + P  YTF  + K    
Sbjct: 92  ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTR 151

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
              L  GR +H HV   G   ++ V  ALV  Y     +D AR VFD  P   V+ WN +
Sbjct: 152 DIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMI 211

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           IS Y + G  +E+  LF +M D  V P + T V VL+AC++L D+  G+ VH ++    +
Sbjct: 212 ISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKV 271

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG-------------- 284
           + N+VL  ++I+MYA CG +  A  IF  M+  ++I+WT ++SG+               
Sbjct: 272 ESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDK 331

Query: 285 ------------MHGY-----GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG 327
                       + GY       EA+ELF  M+A  V+P+  T V+VL+ACAH G ++ G
Sbjct: 332 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG 391

Query: 328 HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI---------------- 371
             +   + +   +   +     ++D++ + G +++A    +++                 
Sbjct: 392 EWIRTYIDRN-KIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAV 450

Query: 372 ---GEK--------------PAPAVWTAMLGACKMHKNFDLGVEVAEHLLS---VEPENP 411
              GEK              P    +  +L AC      D G +    + S   +EP N 
Sbjct: 451 NGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEP-NI 509

Query: 412 GHYVMLSNIYALAGRMDRV-EVVRNIMIQ 439
            HY  L ++ A AGR+    EV+ N+ I+
Sbjct: 510 AHYGCLVDLLARAGRLKEAYEVIENMPIK 538


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/587 (38%), Positives = 348/587 (59%), Gaps = 14/587 (2%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQR 61
           P    YE++L A  R +       VH  L      RS   L T+L+        +  A++
Sbjct: 246 PTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQ 305

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC----- 116
           +F   P  + F++N ++   + A+   ++L     M    +   +Y+++  +K+C     
Sbjct: 306 VFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASA 365

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
           +HL      R +H H    GY    HV   L++ YAK   V  A +VF  MPD+++V+W+
Sbjct: 366 SHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWS 425

Query: 177 SMISGYEQNGFAKEAIGLFNLM--RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           +MI  Y +N    +AI +F  M   D  + P+S T V VL ACA +  +  G+ +H +I+
Sbjct: 426 AMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYIL 485

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL-NVIAWTAMISGYGMHGYGTEAV 293
            +G D+ V +  +L+ MY +CG +   R IF+ +    NV++W ++ISGYGMHG+G E++
Sbjct: 486 RRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESL 545

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           ++F  M   G+ PN +TFV+VL AC+H GLV++G ++F SM  EY + P  EH+ CMVDL
Sbjct: 546 QVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESM-VEYNVTPRAEHYACMVDL 604

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GRAG L+EA + ++  +  +P+P VW ++LGAC++H + +       HL  +EP N G+
Sbjct: 605 LGRAGRLDEAVELIQS-MRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLEPRNAGN 663

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+L++IYA A   ++V+V++ ++ +  L+K  G S +EV +K Y F   D  +P   E+
Sbjct: 664 YVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVSVDNKNPQVEEL 723

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
              + E + + +  GYVP++ S ++++EEEE+E  L  HSEKLA+AFGL++T  G  IRI
Sbjct: 724 QALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFGLIKTGSGEAIRI 783

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCHS  KFIS  T+REI+VRD  RFHHF+ G CSC DYW
Sbjct: 784 TKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/556 (39%), Positives = 342/556 (61%), Gaps = 3/556 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH ++I  G      +   L+++    G +  AQR+F  +   D   +N++I    + + 
Sbjct: 270 VHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDD 329

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY-DSDLHVQA 145
              +L F++ M+   + P   T  ++      LS   +GRAVH  V    + + D+ +  
Sbjct: 330 PVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGN 389

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD-FGVN 204
           ALVN YAK  ++D AR VF+++P + V++WN++I+GY QNG A EAI  +N+M +   + 
Sbjct: 390 ALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIV 449

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T V +L A + +G +  G  +H  ++   L ++V +AT LI+MY +CG +  A  +
Sbjct: 450 PNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSL 509

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  + +   + W A+IS  G+HG+G +A++LF  MRA GV+ +++TFV++LSAC+H+GLV
Sbjct: 510 FYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLV 569

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            E    F +M++EY + P ++H+ CMVDLFGRAG L +AY  V ++  +  A ++W  +L
Sbjct: 570 DEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADA-SIWGTLL 628

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            AC++H N +LG   ++ LL V+ EN G+YV+LSNIYA  G+ +    VR++   +GL+K
Sbjct: 629 AACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRK 688

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G+S+V V     +F  G++SHP   EIY+ L  L  + +  GYVP+    + ++EE+E
Sbjct: 689 TPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDE 748

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E  L  HSE+LA+ FG++ T P   IRI KNLR+C DCH+A K+IS  T REIIVRD  
Sbjct: 749 KEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSN 808

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHFK G CSC DYW
Sbjct: 809 RFHHFKDGICSCGDYW 824



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 204/388 (52%), Gaps = 5/388 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           +P    +  +LKA   L   +++H  ++  G+     +   L+ L    G +  A ++F 
Sbjct: 147 RPDFYTFPPVLKACLSLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFV 206

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            +P  D   +N +I    +     ++L    RM    +     T S+++  CA  + +  
Sbjct: 207 DMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVG 266

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G  VH +V   G +SD+ V  AL+N Y+K   +  A++VFD M  + +V+WNS+I+ YEQ
Sbjct: 267 GVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQ 326

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG-QGLDVNVV 243
           N     A+G F  M   G+ PD  T V + +   QL D  +GR VH F+V  + L+V++V
Sbjct: 327 NDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIV 386

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM-RAH 302
           +  +L+NMYA+ G++  AR +F+ +   +VI+W  +I+GY  +G  +EA++ ++ M    
Sbjct: 387 IGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGR 446

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
            + PN  T+V++L A +H G +Q+G ++   + +   L   V    C++D++G+ G L +
Sbjct: 447 TIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKN-CLFLDVFVATCLIDMYGKCGRLED 505

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           A     ++  E   P  W A++ +  +H
Sbjct: 506 AMSLFYEIPQETSVP--WNAIISSLGIH 531



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 173/309 (55%), Gaps = 8/309 (2%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           +  + ++   +   +Q+HA L+V G  +   +LT+L++L    G ++ +   F  I   +
Sbjct: 54  FNLVFRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKN 113

Query: 71  SFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
            F +N+++   +R  +   S D +     + +S + P  YTF  V+K+C  L+    G  
Sbjct: 114 IFSWNSMVSAYVRRGRYRDSMDCVT--ELLSLSGVRPDFYTFPPVLKACLSLAD---GEK 168

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +HC V   G++ D++V A+L++ Y++   V+VA KVF  MP + V +WN+MISG+ QNG 
Sbjct: 169 MHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGN 228

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
             EA+ + + M+   V  D+ T   +L  CAQ  D+  G  VH +++  GL+ +V ++ +
Sbjct: 229 VAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNA 288

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           LINMY++ G +  A+ +FD M   ++++W ++I+ Y  +     A+  F  M   G+RP+
Sbjct: 289 LINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPD 348

Query: 308 NVTFVAVLS 316
            +T V++ S
Sbjct: 349 LLTVVSLAS 357



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 20/175 (11%)

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           +I++ + +H  ++  G   +VVL T L+ +YA  G++S +   F  +   N+ +W +M+S
Sbjct: 63  NINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVS 122

Query: 282 GYGMHGYGTEAVELFHRMRA-HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
            Y   G   ++++    + +  GVRP+  TF  VL AC      ++ H     M      
Sbjct: 123 AYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKM------ 176

Query: 341 LPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAML-GACK 388
             G EH V     ++ L+ R G +  A+K   D+    P   V  W AM+ G C+
Sbjct: 177 --GFEHDVYVAASLIHLYSRFGAVEVAHKVFVDM----PVRDVGSWNAMISGFCQ 225


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/566 (39%), Positives = 335/566 (59%), Gaps = 16/566 (2%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDA--GFITYAQRIFFCIPSPDSFLFNTLI----- 78
           Q+HA  I +   R+    +KL +    +  G + YA+ +    PS +S+ +NT+I     
Sbjct: 6   QLHAQFIKSQNQRN---FSKLFTFAAQSPSGDLNYARLLLNTNPSLNSYYYNTIIRAYSH 62

Query: 79  IRNSKANFSTDSLLFYRRMIVSNI-SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
             N   +F   SL  +     +N+  P  +T+S  +KSC  L +    + +H  +   G+
Sbjct: 63  TSNPTHHFQALSLFIFMLQPHTNVPKPDTFTYSFALKSCGRLKLTQQAKQLHGFINKMGF 122

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
             DL++Q AL++ Y++   + +AR+VFDRM  + VV+W SMI+G+  +    EAI LF  
Sbjct: 123 GFDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQR 182

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M + GV+ +  T + VL  CA  G + +GR VH  +  +G+D    + T+LI+MY++CG 
Sbjct: 183 MLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGC 242

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           +  ARE+FD + + +V  WTAMI G   HG   EA+ELF  M    V+P+  T + VLSA
Sbjct: 243 LESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSA 302

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
             +AGLV+EG+  F  +++ Y + P ++H  CMVDL  + G L EA  F+ + +  KP  
Sbjct: 303 YRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFI-NAMPMKPDA 361

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEH--LLSVEPENPGHYVMLSNIYALAGRM-DRVEVVR 434
            +W  ++ ACK+H + +    + +H  L  +   + G Y++ SN+YA  G+  D+ E VR
Sbjct: 362 VIWRTLIWACKVHADTERAERLMKHLELQGMSAHDSGSYILASNVYASTGKWCDKAE-VR 420

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
            +M +KGL K  G S +EVD   + F MGD  HP+T +I+  LD+++ + R+ GY P+  
Sbjct: 421 ELMNKKGLVKPPGSSRIEVDGVVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNPKVS 480

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
             M E+++EE+   L +HSEKLALA+GL+RT PG  IRIVKNLR C DCH  +K IS   
Sbjct: 481 EVMLEMDDEEKAIQLLHHSEKLALAYGLIRTCPGSKIRIVKNLRSCEDCHEFMKLISKVY 540

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
            R+IIVRDR+RFHHFK G CSC DYW
Sbjct: 541 QRDIIVRDRIRFHHFKNGDCSCKDYW 566



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 146/309 (47%), Gaps = 5/309 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P +  Y   LK+  RLK  QQ   +H  +   G+G    +   L+ +  + G +  A++
Sbjct: 88  KPDTFTYSFALKSCGRLKLTQQAKQLHGFINKMGFGFDLYIQNALIHMYSEIGELVIARQ 147

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   D   + ++I      + + +++  ++RM+   +  +  T  +V++ CA    
Sbjct: 148 VFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVGVDVNEATVISVLRGCADSGA 207

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L++GR VH  V   G D   +V  AL++ Y+K   ++ AR+VFD + D+ V  W +MI G
Sbjct: 208 LSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDDVLDRDVFVWTAMIYG 267

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDV 240
              +G  KEAI LF  M    V PD  T + VL+A    G +  G  + ++      +  
Sbjct: 268 LACHGMCKEAIELFLEMETCNVKPDERTIMVVLSAYRNAGLVREGYMFFNDVQKRYSMKP 327

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
           N+     ++++ A+ G + +A +  + M  + + + W  +I    +H     A  L   +
Sbjct: 328 NIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIWACKVHADTERAERLMKHL 387

Query: 300 RAHGVRPNN 308
              G+  ++
Sbjct: 388 ELQGMSAHD 396


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/601 (38%), Positives = 340/601 (56%), Gaps = 37/601 (6%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           Y  +L +   L PL Q+HA +IV+G+    S +T L++L         A+ +F   P+P 
Sbjct: 55  YPRLLSSCKHLNPLLQIHAQIIVSGFKHHHS-ITHLINLYSLFHKCDLARSVFDSTPNPS 113

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
             L+N++I   +++    ++L  Y  M+    +    +  + ++   + +  L   R   
Sbjct: 114 RILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAR--- 170

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE------ 183
             VF      D+    A++   ++S +  VAR+VFD+M D+  V+W +M++GY       
Sbjct: 171 -EVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFV 229

Query: 184 ------------------------QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
                                   QNG AKEAI  F+ MR    +P+S T V VL A A 
Sbjct: 230 EVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAY 289

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           L     G   H  I+  G   N ++  SLI+MYA+CG +  + ++F+ M   + ++W AM
Sbjct: 290 LAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAM 349

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           +SGY +HG+G  A+ LF  M+   V+ ++V+FV+VLSAC HAGLV+EG ++F SM  +Y 
Sbjct: 350 LSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYH 409

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           + P +EH+ CMVDL GRAGL +E   F+K V+  +P   VW A+LG+C+MH N  LG   
Sbjct: 410 IKPDLEHYACMVDLLGRAGLFDETLGFIK-VMPVEPDAGVWGALLGSCRMHSNVKLGEVA 468

Query: 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYL 459
            +HL+ +EP NP H+V+LS+IYA +GR       R+ M   GLKK  G S VE+  K + 
Sbjct: 469 LDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHA 528

Query: 460 FSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALA 519
           F +GDKSHP    ++   + L+ +  + GYVP+    +  +EEE++E  L  HSE+LA+ 
Sbjct: 529 FRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAIT 588

Query: 520 FGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           F L+ T PG TI+IVKNLR+C DCH+  KFIS  T R IIVRD  RFHHF+ G CSC DY
Sbjct: 589 FALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDY 648

Query: 580 W 580
           W
Sbjct: 649 W 649



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 46/332 (13%)

Query: 101 NISPSNYT----FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           ++S S YT    +  ++ SC HL+ L     +H  + VSG+    H    L+N Y+  + 
Sbjct: 43  SLSSSTYTNYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHH-HSITHLINLYSLFHK 98

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM-RDFGVNPDSTTCVCVLA 215
            D+AR VFD  P+ S + WNSMI  Y ++    EA+ ++  M    G+  D      ++ 
Sbjct: 99  CDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVD 158

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
             +++GD+   R V + +  +    +VV   ++I   ++  +   AR +FD M + + ++
Sbjct: 159 MYSKMGDLKRAREVFDKMPKR----DVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVS 214

Query: 276 WTAMISGYGMHGYGTEAVEL------------------------------FHRMRAHGVR 305
           W  M++GY  +G   E +EL                              FH+MR     
Sbjct: 215 WGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFH 274

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           PN+VTFV+VL A A+    +EG    A + Q  G L        ++D++ + G L+ + K
Sbjct: 275 PNSVTFVSVLPAAAYLAAFREGMAFHACIIQ-MGFLSNTLVGNSLIDMYAKCGQLDYSEK 333

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
              ++  +      W AML    +H + D  +
Sbjct: 334 LFNEM--DHKDTVSWNAMLSGYAVHGHGDRAI 363


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/571 (38%), Positives = 338/571 (59%), Gaps = 4/571 (0%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCIPSPD 70
           ++LK    ++  +QVHAH++  G        + L++   +   G + YA  IF  I  P 
Sbjct: 35  SLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPG 94

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
           SF +NT+I  N  +    ++LL Y  M+   I P N+T+  V+K+C+ L  L  G  +H 
Sbjct: 95  SFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHA 154

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
           HVF +G + D+ VQ  L+N Y K   ++ A  VF++M +KSV +W+S+I  +       E
Sbjct: 155 HVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHE 214

Query: 191 AIGLFNLMRDFGVN-PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
            + L   M   G +  + +  V  L+AC  LG  + GR +H  ++    ++NV + TSLI
Sbjct: 215 CLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLI 274

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           +MY + G++ K   +F  M++ N  ++T +I+G  +HG G EA+ +F  M   G+ P++V
Sbjct: 275 DMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDV 334

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
            +V VLSAC+HAGLV EG + F  ++ E+ + P ++H+ CMVDL GRAG+L  AY  +K 
Sbjct: 335 VYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKS 394

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
            +  KP   VW ++L ACK+H N ++G   AE++  +   NPG Y++L+N+YA A +   
Sbjct: 395 -MPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAKKWAD 453

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
           V  +R  M +K L +  G+S VE ++  Y F   DKS P    IY  + ++  + +  GY
Sbjct: 454 VARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGY 513

Query: 490 VPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKF 549
            P+    + +++E+E+   L++HS+KLA+AF L++TS G  IRI +N+RMC DCH+  KF
Sbjct: 514 TPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKF 573

Query: 550 ISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           ISV   REI VRDR RFHHFK G+CSC DYW
Sbjct: 574 ISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/537 (40%), Positives = 331/537 (61%), Gaps = 2/537 (0%)

Query: 45  KLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK-ANFSTDSLLFYRRMIVSNIS 103
           +L+S   + G    A  +F  +P  D   +N+LI   S+ A+      L +R      + 
Sbjct: 78  QLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLK 137

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P+  T   V+ +CA +  L++G+ +H     SG   ++ V  +L+N Y K   ++ A  +
Sbjct: 138 PNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCL 197

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F+ M  +S+V+WNSM++ +   G A++ IG F +MR  G+N D  T V +L AC  LG  
Sbjct: 198 FEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVR 257

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
            L   VH +I+  GLD N+ +AT+L+++YA+ G +S + ++F  M   + +AWTAM+S Y
Sbjct: 258 KLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSY 317

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
            MHG G EA+E F  M   GV P++VTF  +LSAC+H+GLV+EG   F  M + YG+   
Sbjct: 318 AMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELR 377

Query: 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
           VEH+ CMVDL GR+G LN+AYK +K +  E P   VW A++GAC++  N +LG EVAE L
Sbjct: 378 VEHYSCMVDLLGRSGHLNDAYKLIKSMPME-PNSGVWGALIGACRVRGNIELGKEVAERL 436

Query: 404 LSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMG 463
            S++P +  +Y+ LSN+Y+ AG+      VR +M ++ L ++ G S +E   K + F MG
Sbjct: 437 FSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMG 496

Query: 464 DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLM 523
           D+SHP+T +IY  L+EL+ + RE G+  ++E  +H+++EE +E  +  HSEKLA+AFGL+
Sbjct: 497 DQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLL 556

Query: 524 RTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            T+ GM + I KN+R+C DCH   K IS+   R II+RD  RFHHF  G CSC DYW
Sbjct: 557 VTNAGMPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 171/328 (52%), Gaps = 24/328 (7%)

Query: 100 SNISPSNYTFS-------AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYA 152
           S +SP+ + FS       A+I + +  S ++  RA+HC V  S   +   +   LV+ Y 
Sbjct: 25  SQLSPTFHAFSNVDSLVSALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYV 84

Query: 153 KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR-DFGVNPDSTTCV 211
           +      A ++FD +PDK +V+WNS+ISG+ +       +GL   MR + G+ P+  T +
Sbjct: 85  ELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVI 144

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
            V++ACA +G++D+G+ +H   V  G+ + V +  SLIN+Y +CG +  A  +F+ MS  
Sbjct: 145 PVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQ 204

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           ++++W +M++ +   G   + +  F  MR  G+  +  T V++L AC + G+     R  
Sbjct: 205 SLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGV-----RKL 259

Query: 332 ASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
           A     Y L  G++ ++     ++DL+ + G L+++ K    +I   P    WTAML + 
Sbjct: 260 AEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMI--NPDAVAWTAMLSSY 317

Query: 388 KMHKNFDLGVEVAEH--LLSVEPENPGH 413
            MH     G E  EH  L+  E   P H
Sbjct: 318 AMHGR---GREAIEHFELMVREGVVPDH 342



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 150/318 (47%), Gaps = 15/318 (4%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H   + +G      ++  L++L    G +  A  +F  +       +N+++  +     
Sbjct: 162 IHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGL 221

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
           +   + ++  M  + I+    T  +++ +C +L +  L  AVH ++   G D +L +  A
Sbjct: 222 AEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATA 281

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ YAK   +  + KVF  M +   VAW +M+S Y  +G  +EAI  F LM   GV PD
Sbjct: 282 LLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPD 341

Query: 207 STTCVCVLAACAQLGDIDLG----RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
             T   +L+AC+  G ++ G    + ++EF    G+++ V   + ++++  R G+++ A 
Sbjct: 342 HVTFTHLLSACSHSGLVEEGKNYFKIMYEF---YGVELRVEHYSCMVDLLGRSGHLNDAY 398

Query: 263 EIFDMMS-ELNVIAWTAMISGYGMHG---YGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
           ++   M  E N   W A+I    + G    G E  E    +     R N +T   + SA 
Sbjct: 399 KLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSR-NYITLSNMYSA- 456

Query: 319 AHAGLVQEGHRVFASMRQ 336
             AG  ++  +V A M++
Sbjct: 457 --AGQWRDASKVRALMKE 472



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/253 (18%), Positives = 108/253 (42%), Gaps = 42/253 (16%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           K  + VH +++  G   + ++ T LL L    G ++ + ++F  + +PD+  +  ++   
Sbjct: 258 KLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSY 317

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           +      +++  +  M+   + P + TF+ ++ +C+H  ++  G+  +  +    Y  +L
Sbjct: 318 AMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKN-YFKIMYEFYGVEL 376

Query: 142 HVQ--AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
            V+  + +V+   +S +++ A K+   MP                               
Sbjct: 377 RVEHYSCMVDLLGRSGHLNDAYKLIKSMP------------------------------- 405

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE--FIVGQGLDVNVVLATSLINMYARCGN 257
              + P+S     ++ AC   G+I+LG+ V E  F +      N +   +L NMY+  G 
Sbjct: 406 ---MEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRNYI---TLSNMYSAAGQ 459

Query: 258 VSKAREIFDMMSE 270
              A ++  +M E
Sbjct: 460 WRDASKVRALMKE 472


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/556 (39%), Positives = 345/556 (62%), Gaps = 4/556 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H ++I  G      +   L+++    G +  AQ++F  +   D   +N++I    + + 
Sbjct: 295 IHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDD 354

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD-LHVQA 145
              +  F+ +M ++ + P   T  ++    A        R+VH  +   G+  + + +  
Sbjct: 355 PVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGN 414

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVN 204
           A+++ YAK   +D A KVF+ +P K VV+WN++ISGY QNG A EAI ++ +M +   + 
Sbjct: 415 AVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIK 474

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +  T V +LAA A +G +  G  +H  ++   L ++V + T LI++Y +CG +  A  +
Sbjct: 475 LNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCL 534

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  +   + + W A+IS +G+HG+G +A++LF  M+  GV+P++VTF+++LSAC+H+GLV
Sbjct: 535 FYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLV 594

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG   F  M QEYG+ P ++H+ CMVDL GRAG L  AY F+KD +   P  ++W A+L
Sbjct: 595 DEGKWFFHLM-QEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKD-MPLHPDASIWGALL 652

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GAC++H N +LG   ++ L  V+ EN G+YV+LSNIYA  G+ + V+ VR++  ++GLKK
Sbjct: 653 GACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKK 712

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G+S++EV+++  +F  G++SHP   EIY  L  L  + +  GY+P+    + ++EE+E
Sbjct: 713 TPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDE 772

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E+ L  HSE+LA+AFG++ T P   IRI KNLR+C DCH+A KFIS  T REI+VRD  
Sbjct: 773 KEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSK 832

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHFK G CSC DYW
Sbjct: 833 RFHHFKNGICSCGDYW 848



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 227/440 (51%), Gaps = 22/440 (5%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRN 81
           +++HA L+V+G  +S  +  +L++L    G ++ ++  F  I   D + +N++I   +RN
Sbjct: 93  KRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRN 152

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
                + D   FY+ ++V+      YTF  V+K+C     L  GR +HC VF  G+  D+
Sbjct: 153 GHFREAIDC--FYQLLLVTKFQADFYTFPPVLKAC---QTLVDGRKIHCWVFKLGFQWDV 207

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V A+L++ Y++   V +AR +FD MP + + +WN+MISG  QNG A +A+ + + MR  
Sbjct: 208 FVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 267

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G+N DS T   +L  CAQLGDI     +H +++  GL+  + ++ +LINMYA+ GN+  A
Sbjct: 268 GINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDA 327

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           +++F  M   +V++W ++I+ Y  +     A   F +M+ +G+ P+ +T V++ S  A +
Sbjct: 328 QKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQS 387

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEKPA 376
              +    V   + +   L+  V     ++D++ + G+++ A+K      VKDV+     
Sbjct: 388 RDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVS---- 443

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE--PENPGHYVMLSNIYALAGRMDRVEVVR 434
              W  ++     +      +EV   +        N G +V +   YA  G + +   + 
Sbjct: 444 ---WNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIH 500

Query: 435 NIMIQKGLKKHVGYSTVEVD 454
             +I+  L   V   T  +D
Sbjct: 501 GHLIKTNLHLDVFVGTCLID 520



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 142/512 (27%), Positives = 251/512 (49%), Gaps = 26/512 (5%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
            +  +LKA   L   +++H  +   G+     +   L+ +    GF+  A+ +F  +P  
Sbjct: 177 TFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFR 236

Query: 70  DSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           D   +N +I   I+N  A  + D L     M +  I+  + T ++++  CA L  ++   
Sbjct: 237 DMGSWNAMISGLIQNGNAAQALDVL---DEMRLEGINMDSVTVASILPVCAQLGDISTAT 293

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H +V   G + +L V  AL+N YAK  N+  A+KVF +M  + VV+WNS+I+ YEQN 
Sbjct: 294 LIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQND 353

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG-LDVNVVLA 245
               A G F  M+  G+ PD  T V + +  AQ  D    R VH FI+ +G L   VV+ 
Sbjct: 354 DPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIG 413

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM-RAHGV 304
            ++++MYA+ G +  A ++F+++   +V++W  +ISGY  +G  +EA+E++  M     +
Sbjct: 414 NAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREI 473

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
           + N  T+V++L+A AH G +Q+G R+   + +   L   V    C++DL+G+ G L +A 
Sbjct: 474 KLNQGTWVSILAAYAHVGALQQGMRIHGHLIKT-NLHLDVFVGTCLIDLYGKCGRLVDAM 532

Query: 365 KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL- 423
                V  E   P  W A++    +H + +  +++   +   E   P H   +S + A  
Sbjct: 533 CLFYQVPRESSVP--WNAIISCHGIHGHGEKALKLFREMQD-EGVKPDHVTFISLLSACS 589

Query: 424 -AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD--------QKNYLFSMGDKSHPNTNEIY 474
            +G +D  +   ++M + G+K  + +    VD        +  Y F      HP+ +   
Sbjct: 590 HSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDAS--- 646

Query: 475 QYLDELMGRCREAGYVPESESAMHELEEEERE 506
                L+G CR  G +   + A   L E + E
Sbjct: 647 -IWGALLGACRIHGNIELGKFASDRLFEVDSE 677



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 148/294 (50%), Gaps = 28/294 (9%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           F+++  SC       L + +H  + VSG      +   LVN YA   +V ++R  FD++ 
Sbjct: 79  FNSLFDSCTKTL---LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQ 135

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
            K V  WNSMIS Y +NG  +EAI  F  L+       D  T   VL AC  L D   GR
Sbjct: 136 RKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GR 192

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +H ++   G   +V +A SLI+MY+R G V  AR +FD M   ++ +W AMISG   +G
Sbjct: 193 KIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNG 252

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
              +A+++   MR  G+  ++VT  ++L  CA  G +       A++   Y +  G+E  
Sbjct: 253 NAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDIST-----ATLIHLYVIKHGLEFE 307

Query: 348 V----CMVDLFGRAGLLNEAYK-----FVKDVIGEKPAPAVWTAMLGACKMHKN 392
           +     +++++ + G L +A K     F++DV+        W +++ A + + +
Sbjct: 308 LFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVS-------WNSIIAAYEQNDD 354


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/538 (42%), Positives = 330/538 (61%), Gaps = 19/538 (3%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTD----SLLFYRRMIVS-NISPSNYTFS 110
           + YA R+F  I +P+SF++N LI   ++   STD    ++  Y RM+   ++    +TF 
Sbjct: 76  LRYAFRVFHQIENPNSFMWNALIRACAR---STDRKQHAIALYHRMLEQGSVMQDKHTFP 132

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
            V+K+CA+L  L+ G  +H  +   G+DSD+++  +LV+FYA  + +D A+ VFDRM ++
Sbjct: 133 FVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSER 192

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH 230
           S+V+WN +I  + + G    A+ LF  M+ F   PD  T   +  ACA +G + LG W H
Sbjct: 193 SLVSWNVVIDAFVRFGEFDAALNLFGEMQKF-FEPDGYTIQSIANACAGMGSLSLGMWAH 251

Query: 231 EFIVGQGLDVN----VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
            F++ +  D +    V+L TSL++MY +CG++  A ++F  M + +V +W +MI G+  H
Sbjct: 252 VFLLKK-FDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTH 310

Query: 287 GYGTEAVELFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           G    A+E F  M R   + PN +TFV VLSAC H GLV EG R F  M  EY + P +E
Sbjct: 311 GEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELE 370

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC-KMHKNFDLGVEVAEHLL 404
           H+ C+VDL  RAGL++EA   V + +  +P   +W ++L AC K +   +L  E+A  +L
Sbjct: 371 HYGCLVDLLARAGLIDEALDVVSN-MPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVL 429

Query: 405 SVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMG 463
             E     G YV+LS +YA A R + V +VR +M  KG+ K  G S++E+D   + F  G
Sbjct: 430 EAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAG 489

Query: 464 DKSHPNTNEIYQYLDELMGRCREAGYVPESESA-MHELEEEEREYSLRYHSEKLALAFGL 522
           D SHP T EIY  LD +  R    GY P+S  A M +   + ++YSLR HSE+LA+AFGL
Sbjct: 490 DTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGL 549

Query: 523 MRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           ++T PGM IRI KNLR+C +CH   K IS   NREIIVRDR+RFHHFK G+CSC+DYW
Sbjct: 550 LKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 607


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/570 (38%), Positives = 333/570 (58%), Gaps = 28/570 (4%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           ++ A   L  L Q+HA + +     +  ++T+L+S  C    + YA  IF C   P+ F+
Sbjct: 46  LIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFV 105

Query: 74  FNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
           FN LI     NS+   S    +   R+   +I P   T   V+KS A L  + LGR +H 
Sbjct: 106 FNALIRGLAENSRFEGSVSHFVLMLRL---SIRPDRLTLPFVLKSVAALVDVGLGRCLHG 162

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
            V   G + D  V+ +LV+ Y K   +    ++FD  P ++                  E
Sbjct: 163 GVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRN----------------KAE 206

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           +I L+N     GV P+  T V  L AC ++G + +G  +H ++   G  +N  + T+L++
Sbjct: 207 SILLWN-----GVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVD 261

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MYA+CGN+  A  +F      +++ W+ MI G+ +HG   +A++ F +M++ G+ P+ V 
Sbjct: 262 MYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVI 321

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           F+A+L+AC+H+G V +G   F SMR +Y + P ++H+  +VDL GRAG L+EA  F++  
Sbjct: 322 FLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQS- 380

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
           +   P   +W A+  AC+ HKN ++    AE LL +EP++PG YV LSN+YA  GR + V
Sbjct: 381 MPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDV 440

Query: 431 EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
           E VR +M  +G++K  G+S +EV+ + + F  GD +H    EI   L+E+    ++ GY+
Sbjct: 441 ERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYM 500

Query: 491 PESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFI 550
           PE+   +H +EEEE+E +L  HSEKLALAFGL+ T+PG TIRIVKNLR+C DCHS +K+ 
Sbjct: 501 PETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYA 560

Query: 551 SVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S  + REII+RD  RFHHFK G+CSC DYW
Sbjct: 561 SKLSRREIILRDIKRFHHFKDGTCSCGDYW 590


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 239/605 (39%), Positives = 348/605 (57%), Gaps = 57/605 (9%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS-PDSFLFNTLIIRNS 82
           L+ +HAHL+V+G   S S L   L+ +  +  ++YA+ +   +P  P + L +   IR +
Sbjct: 22  LRALHAHLVVSGRLASPSHLAAFLASLASSNHLSYARLV---LPQRPATLLAHNAFIR-A 77

Query: 83  KANFSTDSLLF--YRRMIVSNISPSNYTFSAVIKSCA----------HLSILNLGR---- 126
            A      L F  +R +    + P +Y+ + ++++            H+S     R    
Sbjct: 78  LARGPRPCLAFAAFRDL---PLPPDHYSLNFLVRAATALVASAAEEKHVSAEVNARLQAV 134

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAK-------------------------------SN 155
           + H      G+ +D HVQ+ +++ YA                                  
Sbjct: 135 SAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGG 194

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
           +VD AR +FD MP +  VAW++MI+GY   G ++EA+ LF+ M   G      T V VL 
Sbjct: 195 DVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLT 254

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           ACAQ+G +D G+WVH ++  +G+ +++ L T+L++MY++CG V  A E+F+ M+E NV  
Sbjct: 255 ACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYT 314

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           WT+ +SG  M+G GTE ++LF RM   G++PN V+FVAVL  C+ AGLV EG   F SM 
Sbjct: 315 WTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM- 373

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
            +YG+ P  EH+ CMVDL+GRAG L++A  F+ D+  E P   VW A+L A ++H + DL
Sbjct: 374 DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPME-PHEGVWGALLNASRIHNSVDL 432

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
           G    + LL++E EN   +V LSNIYA +     V  VR +M  KG+KK  G+ST+EVD 
Sbjct: 433 GKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDG 492

Query: 456 KNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEK 515
           K + F +G + HP  NEI   L E+  R R  GY   +   + ++EEEE+E ++  HSEK
Sbjct: 493 KVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEK 552

Query: 516 LALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCS 575
           LALAFGL+     + IRIVKNLR+C+DCH  IK +S   NREI++RDR RFHHFK G CS
Sbjct: 553 LALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECS 612

Query: 576 CLDYW 580
           C DYW
Sbjct: 613 CRDYW 617


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/557 (38%), Positives = 337/557 (60%), Gaps = 5/557 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H+ +I +G      +   L+ +   +  +  +++IF  +   +   +  LI    ++
Sbjct: 268 KQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQS 327

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +++  +  M+  +++P+ +TFS+V+K+CA L    +G+ +H      G  +   V 
Sbjct: 328 RQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVG 387

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN-LMRDFGV 203
            +L+N YA+S  ++ ARK F+ + +K+++++N+     + N  A ++   FN  +   GV
Sbjct: 388 NSLINMYARSGTMECARKAFNILFEKNLISYNT---AADANAKALDSDESFNHEVEHTGV 444

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
                T  C+L+  A +G I  G  +H  IV  G   N+ +  +LI+MY++CGN   A +
Sbjct: 445 GASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQ 504

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +F+ M   NVI WT++ISG+  HG+ T+A+ELF+ M   GV+PN VT++AVLSAC+H GL
Sbjct: 505 VFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGL 564

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           + E  + F SM   + + P +EH+ CMVDL GR+GLL EA +F+  +  +  A  VW   
Sbjct: 565 IDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADA-LVWRTF 623

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           LG+C++H+N  LG   A+ +L  EP +P  Y++LSN+YA  GR D V  +R  M QK L 
Sbjct: 624 LGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLI 683

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K  GYS +EVD + + F +GD SHP   +IY  LDEL  + +  GY+P ++  +H++E+E
Sbjct: 684 KETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDE 743

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
           ++E  L  HSEK+A+A+ L+ T     IR+ KNLR+C DCH+AIK+IS+ T REI+VRD 
Sbjct: 744 QKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDA 803

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFHH K G CSC DYW
Sbjct: 804 NRFHHIKDGKCSCNDYW 820



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 167/315 (53%), Gaps = 8/315 (2%)

Query: 12  EAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS 71
           +A +++G  L+  + +H  LI +G      +L  L++L    G    A  IF  +     
Sbjct: 47  KACIRSG-NLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKR 105

Query: 72  FLFNTLIIRNSKANFSTDS--LLFYRRMIVSN---ISPSNYTFSAVIKSCAHLSILNLGR 126
            L +   I +  AN S +S  LL +  M+  +   I P+ Y F+A+++SC++      G 
Sbjct: 106 DLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGL 165

Query: 127 AVHCHVFVSGY-DSDLHVQAALVNFYAKSN-NVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           A+   +  +GY DS + V  AL++ + K   ++  AR VFD+M  K++V W  MI+ Y Q
Sbjct: 166 AIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQ 225

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
            G   +A+ LF  +      PD  T   +L+AC +L    LG+ +H +++  GL  +V +
Sbjct: 226 LGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFV 285

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             +L++MYA+   V  +R+IF+ M   NV++WTA+ISGY       EA++LF  M    V
Sbjct: 286 GCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHV 345

Query: 305 RPNNVTFVAVLSACA 319
            PN  TF +VL ACA
Sbjct: 346 TPNCFTFSSVLKACA 360



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 199/403 (49%), Gaps = 23/403 (5%)

Query: 27  VHAHLIVAGYGRSRSML-TKLLSLVCDAGF-ITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + A L+  GY  S   +   L+ +    G  I  A+ +F  +   +   +  +I R S+ 
Sbjct: 167 IFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQL 226

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               D++  + R++VS  +P  +T ++++ +C  L   +LG+ +H  V  SG  SD+ V 
Sbjct: 227 GLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVG 286

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             LV+ YAKS  V+ +RK+F+ M   +V++W ++ISGY Q+   +EAI LF  M    V 
Sbjct: 287 CTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVT 346

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T   VL ACA L D  +G+ +H   +  GL     +  SLINMYAR G +  AR+ 
Sbjct: 347 PNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKA 406

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELF-HRMRAHGVRPNNVTFVAVLSACAHAGL 323
           F+++ E N+I++    +    +    ++ E F H +   GV  +  T+  +LS  A  G 
Sbjct: 407 FNILFEKNLISYN---TAADANAKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGT 463

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVC----MVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           + +G ++ A + +      G   ++C    ++ ++ + G    A +   D +G +     
Sbjct: 464 IVKGEQIHALIVKS-----GFGTNLCINNALISMYSKCGNKEAALQVFND-MGYRNV-IT 516

Query: 380 WTAMLGACKMH----KNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           WT+++     H    K  +L  E+ E  + V+P    +  +LS
Sbjct: 517 WTSIISGFAKHGFATKALELFYEMLE--IGVKPNEVTYIAVLS 557



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 139/298 (46%), Gaps = 11/298 (3%)

Query: 96  RMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155
           R+ ++  SP   + S ++K+C     L LG+ +H  +  SG   D  +  +L+  Y+K  
Sbjct: 30  RLDLTTTSPLIKS-SLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCG 88

Query: 156 NVDVARKVFDRMP--DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN---PDSTTC 210
           + + A  +F  M    + +V+W+++IS +  N     A+  F  M     N   P+    
Sbjct: 89  DWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCF 148

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQG-LDVNVVLATSLINMYARCG-NVSKAREIFDMM 268
             +L +C+       G  +  F++  G  D +V +  +LI+M+ + G ++  AR +FD M
Sbjct: 149 TALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKM 208

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
              N++ WT MI+ Y   G   +AV+LF R+      P+  T  ++LSAC        G 
Sbjct: 209 QHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGK 268

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           ++ + + +  GL   V     +VD++ ++  +  + K    ++        WTA++  
Sbjct: 269 QLHSWVIRS-GLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMS--WTALISG 323



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 17/220 (7%)

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS--E 270
           +L AC + G+++LG+ +H  ++  GL ++ VL  SLI +Y++CG+   A  IF  M   +
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRM---RAHGVRPNNVTFVAVLSACAHAGLVQEG 327
            ++++W+A+IS +  +   + A+  F  M     + + PN   F A+L +C++      G
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 328 HRVFASMRQEYGLLPG-VEHHVC----MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
             +FA     + L  G  + HVC    ++D+F + GL  ++ + V D +  K     WT 
Sbjct: 165 LAIFA-----FLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNL-VTWTL 218

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           M+         D  V++   LL V    P  + + S + A
Sbjct: 219 MITRYSQLGLLDDAVDLFCRLL-VSEYTPDKFTLTSLLSA 257


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/587 (36%), Positives = 335/587 (57%), Gaps = 32/587 (5%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H H++  G   +  + T L+ +    G +  A+ +F   P  D   +N +I   +K 
Sbjct: 138 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 197

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +S   +  M    + P+  T   V+ +C+ L  L  G+ VH +V     +S+L ++
Sbjct: 198 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLE 257

Query: 145 AALVNFYAKS-------------NN------------------VDVARKVFDRMPDKSVV 173
            A+++ YA               NN                  +DVAR  FD+MP+K  V
Sbjct: 258 NAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYV 317

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           +W +MI GY ++   KEA+ LF  M+   V PD  T V VL ACA LG ++LG W+  +I
Sbjct: 318 SWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYI 377

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
               +  ++ +  +LI+MY +CG+V KA  IF  MS+ +   WTAMI G  ++G+G +A+
Sbjct: 378 DRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKAL 437

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           ++F  M    + P+ +T++ VLSAC H GLV +G + F  M  ++G+ P + H+ C+VDL
Sbjct: 438 DMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDL 497

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
             RAG L EAY+ +++ +  K    VW A+L  C++++  D+   V + +L +EP+N   
Sbjct: 498 LARAGRLKEAYEVIEN-MPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAV 556

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+L NIYA   R + +  +R +M+ KG+KK  G S +E++ + + F  GD+SHP T  I
Sbjct: 557 YVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNI 616

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
              LD++    + AGY P+      ++ EE++E S+  HSEKLA+AFGL+ + PG+TIRI
Sbjct: 617 DAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRI 676

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLRMC+DCH+  K +S   NRE+IVRDR RFHHFK G CSC DYW
Sbjct: 677 TKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 142/509 (27%), Positives = 236/509 (46%), Gaps = 72/509 (14%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITY 58
           +K+  P +    ++L+    +  LQQVH   I  G   +  +  ++++  C  + G   Y
Sbjct: 11  LKSFSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQY 70

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+R+F  IP P+ F++NT+I   S+ +F    +  Y  M+   + P  YTF  + K    
Sbjct: 71  ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTR 130

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
              L  GR +H HV   G   ++ V  ALV  Y     +D AR VFD  P   V+ WN +
Sbjct: 131 DIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMI 190

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           IS Y + G  +E+  LF +M D  V P + T V VL+AC++L D+  G+ VH ++    +
Sbjct: 191 ISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKV 250

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG-------------- 284
           + N+VL  ++I+MYA CG +  A  IF  M+  ++I+WT ++SG+               
Sbjct: 251 ESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDK 310

Query: 285 ------------MHGY-----GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG 327
                       + GY       EA+ELF  M+A  V+P+  T V+VL+ACAH G ++ G
Sbjct: 311 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG 370

Query: 328 HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI---------------- 371
             +   + +   +   +     ++D++ + G +++A    +++                 
Sbjct: 371 EWIRTYIDRN-KIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAV 429

Query: 372 ---GEK--------------PAPAVWTAMLGACKMHKNFDLGVEVAEHLLS---VEPENP 411
              GEK              P    +  +L AC      D G +    + S   +EP N 
Sbjct: 430 NGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEP-NI 488

Query: 412 GHYVMLSNIYALAGRMDRV-EVVRNIMIQ 439
            HY  L ++ A AGR+    EV+ N+ I+
Sbjct: 489 AHYGCLVDLLARAGRLKEAYEVIENMPIK 517


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/519 (42%), Positives = 311/519 (59%), Gaps = 8/519 (1%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           +P P +  +  LI     A  + +++   RR   S + P ++T   V+ +CA ++ L  G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 126 RAVHCHVFVS-GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
            AV        G    + V  A ++ Y K   ++ AR VFD M ++  VAW +M+ GY  
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           NG  +EA+ LF  M+  G  PD  T V  L+AC +LG +DLGR     +    +  N VL
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVL 180

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
            T+LI+MYA+CG+ S+A  +F  M E ++I W AMI G GM G+   A  L  +M+  GV
Sbjct: 181 GTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGV 240

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
           + N+ TF+ +L +C H GLV +G + F +M   Y + P +EH+ CMVDLF RAGLL EA+
Sbjct: 241 KLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAH 300

Query: 365 KFVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           +     IG+ P  A   VW A+LG CK+H+N DL     + L+ +EP N G+YVMLSNIY
Sbjct: 301 QL----IGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIY 356

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           + +GR +    +R  M  KG++K    S VE+D K + F +GD SHP +++IY  LDEL 
Sbjct: 357 SNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELG 416

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              +  GY P +E  M ++E EE+E +L +HSEK+A+AF L+ T PG TIR+ KNLR+C 
Sbjct: 417 MEMKAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCT 476

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSAIK IS  T REI+VRD  RFH F+ G CSC DYW
Sbjct: 477 DCHSAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 124/288 (43%), Gaps = 6/288 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVA----GYGRSRSMLTKLLSLVCDAGFITYAQ 60
           +P S     +L A  R+  L+   A    A    G   S  + T  L L    G +  A+
Sbjct: 38  RPDSFTAVRVLTACARVADLETGEAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKAR 97

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
            +F  + + D+  +  ++   +      ++L  +  M +    P  YT    + +C  L 
Sbjct: 98  SVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLG 157

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L+LGR     V       +  +  AL++ YAK  +   A  VF +M ++ ++ WN+MI 
Sbjct: 158 ALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMIL 217

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR-WVHEFIVGQGLD 239
           G    G  K A  L   M+  GV  +  T + +L +C   G ++ GR + H       + 
Sbjct: 218 GLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRIS 277

Query: 240 VNVVLATSLINMYARCGNVSKAREIF-DMMSELNVIAWTAMISGYGMH 286
             +     ++++++R G + +A ++  DM    N + W A++ G  +H
Sbjct: 278 PRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIH 325


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/561 (37%), Positives = 335/561 (59%), Gaps = 1/561 (0%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           +L+ L+++H + I  G+     +    ++     G +  A+R+F+ + +     +N LI 
Sbjct: 251 QLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIG 310

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             ++      +L  Y +M  S + P  +T  +++ + AHL  L  G+ VH  V   G + 
Sbjct: 311 GCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEI 370

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D  +  +L++ Y        AR +FD M +KS V+WN+MISGY QNG  ++A+ LF  + 
Sbjct: 371 DSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLV 430

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G  P     V VL AC+Q   + LG+  H + +   L  +V +A S I+MYA+ G + 
Sbjct: 431 SDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIK 490

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           ++R +FD +   ++ +W A+I+ YG+HG G E++ELF RMR  G  P+  TF+ +L+ C+
Sbjct: 491 ESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCS 550

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           HAGLV+EG + F  M+  +G+ P +EH+ C++D+ GRAG L++A + V + + E+P   V
Sbjct: 551 HAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHE-MPEQPDSRV 609

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W+++L  C+     ++G  VAE LL +EP+N  +YV LSN+YA +GR D V  VR ++  
Sbjct: 610 WSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKD 669

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
            GL+K  G S +E+  K + F  GD   P + E+     +L  +  + GY P + + +H+
Sbjct: 670 IGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHD 729

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           ++EE++   LR HSEKLA+ FGL+ T+ G T+RI KNLR+CVDCH+A KF+S  T REII
Sbjct: 730 VDEEKKIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREII 789

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           +RD  RFHHFK G CSC DYW
Sbjct: 790 IRDNKRFHHFKDGLCSCGDYW 810



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 191/382 (50%), Gaps = 4/382 (1%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           ++H   +  G      +   L+ +    G++T AQ +F      ++  +NT+I       
Sbjct: 155 RIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKG 214

Query: 86  FSTDSLLFYRRM-IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           +  ++   +R M +  +I  +  T   ++ +C  +S L   + +H +    G+  D  V 
Sbjct: 215 YIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVA 274

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
              V  YAK   +  A +VF  M  K+V +WN++I G  QNG  ++A+ L+  M   G+ 
Sbjct: 275 NGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLV 334

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD  T   +L A A L  +  G+ VH F++  GL+++  +  SL+++Y  CG  S AR +
Sbjct: 335 PDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLL 394

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD M E + ++W AMISGY  +G   +A+ LF ++ + G +P+++  V+VL AC+    +
Sbjct: 395 FDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSAL 454

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           + G        +   L+  V      +D++ ++G + E+ + V D +  K   A W A++
Sbjct: 455 RLGKETHCYALKAL-LMEDVFVACSTIDMYAKSGCIKES-RSVFDGLKNKDL-ASWNAII 511

Query: 385 GACKMHKNFDLGVEVAEHLLSV 406
            A  +H + +  +E+ E +  V
Sbjct: 512 AAYGVHGDGEESIELFERMRKV 533



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 151/303 (49%), Gaps = 14/303 (4%)

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
           +F + +  +  +  N+TF  VIK+C       LG  +H  V   G   D+ V  AL+  Y
Sbjct: 17  MFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMY 76

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR--DFGVNPDSTT 209
            K   VD A KVF  MP +++V+WNS+ISG+ +NGF+K+   +   M   + G+ PD  T
Sbjct: 77  GKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIAT 136

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
            V VL  CA+  D+ +G  +H   V  GL  +V +  SL++MY++CG +++A+ +FD  +
Sbjct: 137 LVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNN 196

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHAGLVQEGH 328
             N ++W  MI G    GY  EA  LF  M+    +  N VT + +L AC     ++   
Sbjct: 197 RKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLK 256

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLF----GRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            +       Y +  G ++   + + F     + G+L  A +    +  E      W A++
Sbjct: 257 ELHG-----YSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSM--ETKTVNSWNALI 309

Query: 385 GAC 387
           G C
Sbjct: 310 GGC 312



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 175/410 (42%), Gaps = 39/410 (9%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H  +I  G      +   L+++    GF+  A ++F  +P  +   +N++I   S+  F
Sbjct: 53  IHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGF 112

Query: 87  STDSLLFYRRMIV--SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           S D       M+     + P   T   V+  CA    + +G  +H      G   D+ V 
Sbjct: 113 SKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVN 172

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR---DF 201
            +LV+ Y+K   +  A+ +FD+   K+ V+WN+MI G    G+  EA  LF  M+   D 
Sbjct: 173 NSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDI 232

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
            VN    T + +L AC ++  +   + +H + +  G   + ++A   +  YA+CG +  A
Sbjct: 233 EVN--EVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICA 290

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
             +F  M    V +W A+I G   +G   +A+ L+ +M   G+ P+  T  ++L A AH 
Sbjct: 291 ERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHL 350

Query: 322 GLVQEGHRV------------------FASMRQEYG-------LLPGVEHHV-----CMV 351
             ++ G  V                    S+    G       L  G+E         M+
Sbjct: 351 KSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMI 410

Query: 352 DLFGRAGLLNEAYKFVKDVI--GEKPAPAVWTAMLGACKMHKNFDLGVEV 399
             + + GL  +A    + ++  G +P+     ++LGAC       LG E 
Sbjct: 411 SGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKET 460


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 239/605 (39%), Positives = 347/605 (57%), Gaps = 57/605 (9%)

Query: 24   LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS-PDSFLFNTLIIRNS 82
            L+ +HAHL+V+G   S S L   L+ +  +  ++YA+     +P  P + L +   IR +
Sbjct: 1227 LRALHAHLVVSGRLASPSHLAAFLASLASSNHLSYAR---LVLPQRPATLLAHNAFIR-A 1282

Query: 83   KANFSTDSLLF--YRRMIVSNISPSNYTFSAVIKSCA----------HLSILNLGR---- 126
             A      L F  +R +    + P +Y+ + ++++            H+S     R    
Sbjct: 1283 LARGPRPCLAFAAFRDL---PLPPDHYSLNFLVRAATALVASAAEEKHVSAEVNARLQAV 1339

Query: 127  AVHCHVFVSGYDSDLHVQAALVNFYAK-------------------------------SN 155
            + H      G+ +D HVQ+ +++ YA                                  
Sbjct: 1340 SAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGG 1399

Query: 156  NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
            +VD AR +FD MP +  VAW++MI+GY   G ++EA+ LF+ M   G      T V VL 
Sbjct: 1400 DVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLT 1459

Query: 216  ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
            ACAQ+G +D G+WVH ++  +G+ +++ L T+L++MY++CG V  A E+F+ M+E NV  
Sbjct: 1460 ACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYT 1519

Query: 276  WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
            WT+ +SG  M+G GTE ++LF RM   G++PN V+FVAVL  C+ AGLV EG   F SM 
Sbjct: 1520 WTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM- 1578

Query: 336  QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
             +YG+ P  EH+ CMVDL+GRAG L++A  F+ D+  E P   VW A+L A ++H + DL
Sbjct: 1579 DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPME-PHEGVWGALLNASRIHNSVDL 1637

Query: 396  GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
            G    + LL++E EN   +V LSNIYA +     V  VR +M  KG+KK  G+ST+EVD 
Sbjct: 1638 GKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDG 1697

Query: 456  KNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEK 515
            K + F +G + HP  NEI   L E+  R R  GY   +   + ++EEEE+E ++  HSEK
Sbjct: 1698 KVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEK 1757

Query: 516  LALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCS 575
            LALAFGL+     + IRIVKNLR+C+DCH  IK +S   NREI++RDR RFHHFK G CS
Sbjct: 1758 LALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECS 1817

Query: 576  CLDYW 580
            C DYW
Sbjct: 1818 CRDYW 1822


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/551 (39%), Positives = 327/551 (59%), Gaps = 24/551 (4%)

Query: 53  AGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA- 111
           AG +  A  +F  IP PDS  +N +++   ++     +L F+ +M V +I+  N   S  
Sbjct: 118 AGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGF 177

Query: 112 -----VIKSCAHLSILNLGRAVHCHVFVSGY--DSDLH---------------VQAALVN 149
                + K+    S++     V     +SGY    DL                V+ A++ 
Sbjct: 178 AQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLT 237

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            Y K   V++A ++F RM  K++V WNSMI+GY +N  A++ + +F  M +  V P+  +
Sbjct: 238 GYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLS 297

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
              VL  C+ L  + LGR +H+ +    L  +    TSLI+MY +CG++  A ++F  M 
Sbjct: 298 LSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP 357

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             +VI+W AMISGY  HG G +A+ LF +MR   ++P+ +TFVAV+ AC HAG V  G +
Sbjct: 358 RKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQ 417

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
            F SM++E+G+     H+ C++DL GRAG L+EA   +K+ +  KP  A++  +LGAC++
Sbjct: 418 YFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKE-MPFKPHAAIYGTLLGACRI 476

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           HKN DL    A +LL+++P +   YV L+NIYA   + D+V  VR +M +  + K  GYS
Sbjct: 477 HKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYS 536

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
            +E+    + F   D+ HP    I++ L+EL G+ + AGYVP+ E A+H++EEE +E  L
Sbjct: 537 WIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLL 596

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
            +HSEKLA+AFGLM+T+PG  IR+ KNLR+C DCH AIKFIS    REIIVRD  RFHHF
Sbjct: 597 LWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHF 656

Query: 570 KRGSCSCLDYW 580
           + G CSC DYW
Sbjct: 657 RNGFCSCGDYW 667



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 7/229 (3%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVS 100
           T +L+     G +  A+RIF  +   +   +N++I   + N +A    D L  ++ MI S
Sbjct: 233 TAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAE---DGLKVFKTMIES 289

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
            + P+  + S+V+  C++LS L LGR +H  V  S    D     +L++ Y K  ++D A
Sbjct: 290 RVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSA 349

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
            K+F  MP K V++WN+MISGY Q+G  ++A+ LF+ MR+  + PD  T V V+ AC   
Sbjct: 350 WKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHA 409

Query: 221 GDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           G +DLG ++        G++   V  T +I++  R G + +A  +   M
Sbjct: 410 GFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 39/198 (19%)

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ-NGFAKEAIGLFNLMRDFGVNPDSTT 209
           + ++ +++ AR VF++M  ++ V WN+M+SGY +  G  KEA  LF+ + +    PDS +
Sbjct: 83  FVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPE----PDSVS 138

Query: 210 ----CVCVL------AACAQLGDI---DLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
                VC L      AA A    +   D+  W                  +LI+ +A+ G
Sbjct: 139 YNIMLVCYLRSYGVEAALAFFNKMPVKDIASW-----------------NTLISGFAQNG 181

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
            + KA ++F +M E N ++W+AMISGY  HG    A EL+  +    V    V   A+L+
Sbjct: 182 QMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSV----VVETAMLT 237

Query: 317 ACAHAGLVQEGHRVFASM 334
                G V+   R+F  M
Sbjct: 238 GYMKFGKVELAERIFQRM 255



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 105/265 (39%), Gaps = 45/265 (16%)

Query: 23  PL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           PL +Q+H  +  +   +  +  T L+S+ C  G +  A ++F  +P  D   +N +I   
Sbjct: 312 PLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGY 371

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           ++      +L  + +M    + P   TF AVI +C H   ++LG       +      + 
Sbjct: 372 AQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQ-----YFKSMKKEF 426

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            ++A  V++                           +I    + G   EA+   +L+++ 
Sbjct: 427 GIEAKPVHY-------------------------TCVIDLLGRAGRLDEAV---SLIKEM 458

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT---SLINMYARCGNV 258
              P +     +L AC    ++DL     EF     L+++   AT    L N+YA     
Sbjct: 459 PFKPHAAIYGTLLGACRIHKNLDLA----EFAARNLLNLDPTSATGYVQLANIYAATNKW 514

Query: 259 SKAREIFDMMSELNVIAWTAMISGY 283
            +  ++  MM E NV+     I GY
Sbjct: 515 DQVAKVRKMMKEHNVVK----IPGY 535


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/538 (39%), Positives = 334/538 (62%), Gaps = 6/538 (1%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLF--YRRMIVSNIS 103
           L+++  + G +  A ++F  +P  +S ++  +I      NFS +  +F  + RM  S   
Sbjct: 154 LMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMI--KGHLNFSEEFGVFELFSRMRRSGFE 211

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY-DSDLHVQAALVNFYAKSNNVDVARK 162
              +    +I++C ++     G+  H       + DS+  +Q +LV+ Y K   +D A K
Sbjct: 212 LDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALK 271

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           +F+ +  + VV W+++I+G+ +NG A E+I +F  M    V P+S T   ++ AC+ LG 
Sbjct: 272 LFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGS 331

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           +  GR VH +++  G++++V   TS I+MYA+CG +  A  +F  + E NV +W+ MI+G
Sbjct: 332 LKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMING 391

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
           +GMHG   EA+ LF+ MR+    PN+VTFV+VLSAC+H+G ++EG   F SM ++YG+ P
Sbjct: 392 FGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITP 451

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
             EH+ CMVDL GRAG ++EA  F+ ++  E P  + W A+LGAC++H+  +L  EVA+ 
Sbjct: 452 VEEHYACMVDLLGRAGKIDEALSFINNMPTE-PGASAWGALLGACRIHRRAELAEEVAKK 510

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
           LL +E +  G YVMLSNIYA  G  + V+  R  M +KG+ K VG++++E+++K YLFS 
Sbjct: 511 LLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSS 570

Query: 463 GDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGL 522
            D+      +I    + L  R RE GYVP+    +H++++E ++  L  HSEKLA+ FGL
Sbjct: 571 EDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFGL 630

Query: 523 MRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           + +  GM IRI KN+R+C DCH+A KFIS+ T R+II+RD  RFHH + G CSC DYW
Sbjct: 631 LNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 182/371 (49%), Gaps = 12/371 (3%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            Q++A ++V    RS      +       G +  A + F  I   +   +NT++  +SK 
Sbjct: 32  HQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKN 91

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               D L  ++RM+       ++     +K+C  LS+    +  H        + D +V 
Sbjct: 92  KCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVA 151

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE--AIGLFNLMRDFG 202
            AL+N Y +  +++ A KVF+ +P K+ V W  MI G+    F++E     LF+ MR  G
Sbjct: 152 PALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLN--FSEEFGVFELFSRMRRSG 209

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG-LDVNVVLATSLINMYARCGNVSKA 261
              D      ++ AC  +     G+  H   + +  +D N  L TSL++MY +CG +  A
Sbjct: 210 FELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFA 269

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
            ++F+ +S  +V+ W+A+I+G+  +G   E++ +F +M A  V PN+VTF +++ AC+  
Sbjct: 270 LKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSL 329

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV-- 379
           G +++G  V   M +  G+   V+++   +D++ + G +  AY+    V  + P   V  
Sbjct: 330 GSLKQGRSVHGYMIRN-GVELDVKNYTSFIDMYAKCGCIVTAYR----VFCQIPEKNVFS 384

Query: 380 WTAMLGACKMH 390
           W+ M+    MH
Sbjct: 385 WSTMINGFGMH 395



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 142/259 (54%), Gaps = 4/259 (1%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L+ +    GF+ +A ++F  I   D  +++ +I   ++   + +S+  +R+M+  +++
Sbjct: 254 TSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVT 313

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P++ TF++++ +C+ L  L  GR+VH ++  +G + D+    + ++ YAK   +  A +V
Sbjct: 314 PNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRV 373

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F ++P+K+V +W++MI+G+  +G   EA+ LF  MR     P+S T V VL+AC+  G I
Sbjct: 374 FCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRI 433

Query: 224 DLGRWVHEFIVGQGLDVNVVLA--TSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMI 280
           + G W H   + +   +  V      ++++  R G + +A   I +M +E    AW A++
Sbjct: 434 EEG-WSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALL 492

Query: 281 SGYGMHGYGTEAVELFHRM 299
               +H     A E+  ++
Sbjct: 493 GACRIHRRAELAEEVAKKL 511



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 7/180 (3%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+S  + +I+ A   L  L+Q   VH ++I  G        T  + +    G I  A R+
Sbjct: 314 PNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRV 373

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  IP  + F ++T+I          ++L  +  M   N  P++ TF +V+ +C+H   +
Sbjct: 374 FCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRI 433

Query: 123 NLGRAVHCHVFVSGYDSDLHVQ--AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMI 179
             G + H       Y      +  A +V+   ++  +D A    + MP +    AW +++
Sbjct: 434 EEGWS-HFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALL 492


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/573 (38%), Positives = 351/573 (61%), Gaps = 7/573 (1%)

Query: 13  AILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           +IL   P+L  +     +H ++I  G      +   L+++    G +  A++ F  +   
Sbjct: 321 SILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFIT 380

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   +N++I    + +    +  F+ +M ++   P   T  ++    A        R+VH
Sbjct: 381 DVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVH 440

Query: 130 CHVFVSGY-DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
             +   G+   D+ +  A+V+ YAK   +D A KVF+ +P K V++WN++I+GY QNG A
Sbjct: 441 GFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLA 500

Query: 189 KEAIGLFNLMRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            EAI ++ +M +   + P+  T V +L A A +G +  G  +H  ++   L ++V +AT 
Sbjct: 501 SEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATC 560

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           LI++Y +CG +  A  +F  + + + + W A+IS +G+HG+  + ++LF  M   GV+P+
Sbjct: 561 LIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPD 620

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           +VTFV++LSAC+H+G V+EG   F  M QEYG+ P ++H+ CMVDL GRAG L  AY F+
Sbjct: 621 HVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFI 679

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           KD +  +P  ++W A+LGAC++H N +LG   ++ L  V+ +N G+YV+LSNIYA  G+ 
Sbjct: 680 KD-MPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKW 738

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           + V+ VR++  ++GLKK  G+ST+EV++K  +F  G++SHP   EIY+ L  L  + +  
Sbjct: 739 EGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSL 798

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           GY+P+    + ++EE+E+E+ L  HSE+LA+AFG++ T P   IRI KNLR+C DCH+A 
Sbjct: 799 GYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNAT 858

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KFIS  T REI+VRD  RFHHFK G CSC DYW
Sbjct: 859 KFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 228/439 (51%), Gaps = 24/439 (5%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSK 83
           +HA L+VAG  +S  + T+L++L  + G ++ ++  F  IP  D + +N++I   + N  
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN-- 195

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
            +F      FY+ ++VS I P  YTF  V+K+C  L     GR +HC  F  G+  ++ V
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFV 252

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
            A+L++ Y++     +AR +FD MP + + +WN+MISG  QNG A +A+ + + MR  G+
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
             +  T V +L  C QLGDI     +H +++  GL+ ++ ++ +LINMYA+ GN+  AR+
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
            F  M   +V++W ++I+ Y  +     A   F +M+ +G +P+ +T V++ S  A +  
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRD 432

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEKPAPA 378
            +    V   + +   L+  V     +VD++ + GLL+ A+K      VKDVI       
Sbjct: 433 CKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVIS------ 486

Query: 379 VWTAMLGACKMHKNFDLGVEV---AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
            W  ++     +      +EV    E    + P N G +V +   YA  G + +   +  
Sbjct: 487 -WNTLITGYAQNGLASEAIEVYKMMEECKEIIP-NQGTWVSILPAYAHVGALQQGMKIHG 544

Query: 436 IMIQKGLKKHVGYSTVEVD 454
            +I+  L   V  +T  +D
Sbjct: 545 RVIKTNLHLDVFVATCLID 563



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 142/510 (27%), Positives = 246/510 (48%), Gaps = 20/510 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           +P    +  +LKA   L   +++H      G+  +  +   L+ +    GF   A+ +F 
Sbjct: 215 RPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFD 274

Query: 65  CIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            +P  D   +N +I   I+N  A  + D L     M +  I  +  T  +++  C  L  
Sbjct: 275 DMPFRDMGSWNAMISGLIQNGNAAQALDVL---DEMRLEGIKMNFVTVVSILPVCPQLGD 331

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           ++    +H +V   G + DL V  AL+N YAK  N++ ARK F +M    VV+WNS+I+ 
Sbjct: 332 ISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAA 391

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG-LDV 240
           YEQN     A G F  M+  G  PD  T V + +  AQ  D    R VH FI+ +G L  
Sbjct: 392 YEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLME 451

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM- 299
           +VV+  ++++MYA+ G +  A ++F+++   +VI+W  +I+GY  +G  +EA+E++  M 
Sbjct: 452 DVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMME 511

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
               + PN  T+V++L A AH G +Q+G ++   + +   L   V    C++D++G+ G 
Sbjct: 512 ECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKT-NLHLDVFVATCLIDVYGKCGR 570

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L +A      V  E  +   W A++    +H + +  +++   +L  E   P H   +S 
Sbjct: 571 LVDAMSLFYQVPQE--SSVTWNAIISCHGIHGHAEKTLKLFGEMLD-EGVKPDHVTFVSL 627

Query: 420 IYAL--AGRMDRVEVVRNIMIQKGLK---KHVGYSTVEVDQKNYLFSMGD--KSHPNTNE 472
           + A   +G ++  +    +M + G+K   KH G     + +  YL    D  K  P   +
Sbjct: 628 LSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPD 687

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEE 502
              +   L+G CR  G +   + A   L E
Sbjct: 688 ASIW-GALLGACRIHGNIELGKFASDRLFE 716



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 138/273 (50%), Gaps = 25/273 (9%)

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
             + +H  + V+G    + +   LVN YA   +V ++R  FD++P K V AWNSMIS Y 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 193

Query: 184 QNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            NG   EAIG F  L+    + PD  T   VL AC  L D   GR +H +    G   NV
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNV 250

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +A SLI+MY+R G    AR +FD M   ++ +W AMISG   +G   +A+++   MR  
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAG 358
           G++ N VT V++L  C   G +       A +   Y +  G+E  +     +++++ + G
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDIST-----AMLIHLYVIKHGLEFDLFVSNALINMYAKFG 365

Query: 359 LLNEAYK-----FVKDVIGEKPAPAVWTAMLGA 386
            L +A K     F+ DV+        W +++ A
Sbjct: 366 NLEDARKAFQQMFITDVVS-------WNSIIAA 391


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/559 (37%), Positives = 334/559 (59%), Gaps = 7/559 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H   I  G+     +   L+ +    G++  A+RI   + + D   + ++I    + 
Sbjct: 365 EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQH 424

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            F  ++L  ++ M +  I P N   ++ I +CA +  +  G+ +H  V+VSGY +D+ + 
Sbjct: 425 EFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIW 484

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            ALVN YA+      A  +F+ +  K  + WN M+SG+ Q+G  +EA+ +F  M   GV 
Sbjct: 485 NALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVK 544

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +  T V  ++A A L DI  G+ +H  ++  G      +A +LI++Y +CG++  A+  
Sbjct: 545 YNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQ 604

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  MSE N ++W  +I+    HG+G EA++LF +M+  G++PN+VTF+ VL+AC+H GLV
Sbjct: 605 FFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLV 664

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA---VWT 381
           +EG   F SM  E+G+ P  +H+ C+VD+ GRAG L+ A KFV+    E P  A   VW 
Sbjct: 665 EEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVE----EMPVSANAMVWR 720

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
            +L AC++HKN ++G   A++LL +EP +   YV+LSN YA+ G+    + VR +M  +G
Sbjct: 721 TLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRG 780

Query: 442 LKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE 501
           ++K  G S +EV    + F +GD+ HP  ++IY+YL +L  R  + GY+  +    HE E
Sbjct: 781 VRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKE 840

Query: 502 EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
           +E+++ +   HSEKLA+AFGLM   P M +R++KNLR+C DCH+ +KF S    REI++R
Sbjct: 841 KEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLR 900

Query: 562 DRLRFHHFKRGSCSCLDYW 580
           D  RFHHF  G+CSC D+W
Sbjct: 901 DVYRFHHFNNGNCSCGDFW 919



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 219/441 (49%), Gaps = 38/441 (8%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H++L+ AG      +   LL L    G I  A  IF      +  L+N +++   + 
Sbjct: 264 KQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQI 323

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           +    S   + +M+ + + P+ +T+  ++++C +   +NLG  +H     +G++SD++V 
Sbjct: 324 SDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVS 383

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             L++ Y+K   +D AR++ + +  K VV+W SMI+GY Q+ F KEA+  F  M+ FG+ 
Sbjct: 384 GVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIW 443

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD+      ++ACA +  +  G+ +H  +   G   +V +  +L+N+YARCG   +A  +
Sbjct: 444 PDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSL 503

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ +   + I W  M+SG+   G   EA+E+F +M   GV+ N  TFV+ +SA A+   +
Sbjct: 504 FEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADI 563

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA-YKFVK--------------- 368
           ++G ++ A++ +  G     E    ++ L+G+ G + +A  +F +               
Sbjct: 564 KQGKQIHATVIKT-GCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITS 622

Query: 369 -----------DVI------GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS---VEP 408
                      D+       G KP    +  +L AC      + G+   + + S   + P
Sbjct: 623 CSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHP 682

Query: 409 ENPGHYVMLSNIYALAGRMDR 429
             P HY  + +I   AG++DR
Sbjct: 683 -RPDHYACVVDILGRAGQLDR 702



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 203/401 (50%), Gaps = 8/401 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +HA  I  G G  R     L+ L    G +  A+R+F  + + D+  +  ++   ++   
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             +++  Y +M  S + P+ Y  S+V+ +C   ++   GR VH  V+  G  S+  V  A
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNA 183

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L+  Y +  ++ +A +VF  MP    V +N++IS + Q G  + A+ +F  MR  G  PD
Sbjct: 184 LIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPD 243

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T   +LAACA +GD++ G+ +H +++  G+  + ++  SL+++Y +CG + +A EIF 
Sbjct: 244 CVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFK 303

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
                NV+ W  M+  YG      ++ +LF +M A GVRPN  T+  +L  C +AG +  
Sbjct: 304 SGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINL 363

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G ++   +  + G    +     ++D++ + G L++A + ++  + E      WT+M+  
Sbjct: 364 GEQIHL-LSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILE--VLEAKDVVSWTSMIAG 420

Query: 387 CKMHKNFDLGVEVAE--HLLSVEPENPGHYVMLSNIYALAG 425
              H+     +E  +   L  + P+N G   + S I A AG
Sbjct: 421 YVQHEFCKEALETFKDMQLFGIWPDNIG---LASAISACAG 458



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/516 (23%), Positives = 239/516 (46%), Gaps = 32/516 (6%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P      ++L A  +    +Q   VHA +   G      +   L++L    G ++ A+R+
Sbjct: 141 PTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERV 200

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P  D   FNTLI R+++      +L  +  M +S  +P   T ++++ +CA +  L
Sbjct: 201 FSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDL 260

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           N G+ +H ++  +G   D  ++ +L++ Y K   +  A ++F      +VV WN M+  Y
Sbjct: 261 NKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAY 320

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q     ++  LF  M   GV P+  T  C+L  C   G+I+LG  +H   +  G + ++
Sbjct: 321 GQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDM 380

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            ++  LI+MY++ G + KAR I +++   +V++WT+MI+GY  H +  EA+E F  M+  
Sbjct: 381 YVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLF 440

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+ P+N+   + +SACA    +++G ++ + +    G    V     +V+L+ R G   E
Sbjct: 441 GIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVS-GYSADVSIWNALVNLYARCGRSKE 499

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A+   + +  E      W  M+        ++  +EV   +     +    Y + + + +
Sbjct: 500 AFSLFEAI--EHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVK----YNVFTFVSS 553

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEV---------------DQKNYLFSMGDKSH 467
           ++   +  ++ +   I   + K    S  EV               D K   F M +++H
Sbjct: 554 ISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNH 613

Query: 468 PNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
            + N I       +  C + G+  E+     ++++E
Sbjct: 614 VSWNTI-------ITSCSQHGWGLEALDLFDQMKQE 642


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/538 (39%), Positives = 335/538 (62%), Gaps = 2/538 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T LL +      + YA R+F  +   +   ++ LI      +  T++   ++ M+V  + 
Sbjct: 243 TALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMC 302

Query: 104 -PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
             S  + ++ ++ CA L+ L +G  +H  +  SG  +DL    +L++ YAK+  ++ A  
Sbjct: 303 FLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATM 362

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           +FD +  K  +++ +++SGY QNG A+EA  +F  M+   V PD  T V ++ AC+ L  
Sbjct: 363 LFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAA 422

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           +  GR  H  ++ +GL +   +  SLI+MYA+CG +  +R++FD M   ++++W  MI+G
Sbjct: 423 LQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAG 482

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
           YG+HG G EA  LF  M+  G  P++VTF+ +++AC+H+GLV EG   F +M  +YG+LP
Sbjct: 483 YGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILP 542

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
            +EH++CMVDL  R G L+EAY+F++  +  K    VW A+LGAC++HKN DLG +V+  
Sbjct: 543 RMEHYICMVDLLARGGFLDEAYQFIQS-MPLKADVRVWGALLGACRIHKNIDLGKQVSRM 601

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
           +  + PE  G++V+LSNI++ AGR D    VR I   KG KK  G S +E++   + F  
Sbjct: 602 IQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVG 661

Query: 463 GDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGL 522
           GD+SHP + +IY  LD ++   ++ GY  ++   + +LEEEE+E +L YHSEKLA+AFG+
Sbjct: 662 GDQSHPCSPDIYHELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGV 721

Query: 523 MRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +  +   TI + KNLR+C DCH+AIK++++  NR IIVRD  RFHHFK G CSC D+W
Sbjct: 722 LSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 172/322 (53%), Gaps = 6/322 (1%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+++F  IP+PD+  +N LI   S       ++  YR M+   + P+ YTF  V+
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           K+C+ L+ L  GR +H H    G  +DL V  AL++ Y +      A  VF +MP + VV
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 174 AWNSMISGYEQNGFAKEAIG-LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           AWN+M++GY  +G    AI  L ++    G+ P+++T V +L   AQ G +  G  VH +
Sbjct: 167 AWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAY 226

Query: 233 IVGQGLDVN---VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
            +   LD N   V++ T+L++MYA+C ++  A  +F  M+  N + W+A+I G+ +    
Sbjct: 227 CLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRM 286

Query: 290 TEAVELFHRMRAHGVRPNNVTFVA-VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
           TEA  LF  M   G+   + T VA  L  CA    ++ G ++ A + +  G+   +    
Sbjct: 287 TEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKS-GIHADLTAGN 345

Query: 349 CMVDLFGRAGLLNEAYKFVKDV 370
            ++ ++ +AGL+NEA     ++
Sbjct: 346 SLLSMYAKAGLINEATMLFDEI 367



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 140/266 (52%), Gaps = 8/266 (3%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNS 82
           Q+HA L  +G     +    LLS+   AG I  A  +F  I   D+  +  L+   ++N 
Sbjct: 327 QLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNG 386

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
           KA    ++ L +++M   N+ P   T  ++I +C+HL+ L  GR  H  V + G   +  
Sbjct: 387 KAE---EAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETS 443

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           +  +L++ YAK   +D++R+VFD+MP + +V+WN+MI+GY  +G  KEA  LF  M++ G
Sbjct: 444 ICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQG 503

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGR-WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
             PD  T +C++AAC+  G +  G+ W        G+   +     ++++ AR G + +A
Sbjct: 504 FEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEA 563

Query: 262 REIFDMMS-ELNVIAWTAMISGYGMH 286
            +    M  + +V  W A++    +H
Sbjct: 564 YQFIQSMPLKADVRVWGALLGACRIH 589


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/573 (37%), Positives = 348/573 (60%), Gaps = 5/573 (0%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           YEA + A    + L   +QVHA +I A Y  +  + T+L+++    G +  A+ +   +P
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
                 + T+I   S+     ++L  + +M+ +   P+ YT + V+ SC+    +  G+ 
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 132

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           VH  +  + ++S + V ++L++ YAKS N+  AR+VFD +P++ VV+  ++ISGY Q G 
Sbjct: 133 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 192

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            +EA+ LF  +   G+  +  T   ++ A + L  +D G+ VH  I+ + L   V L  S
Sbjct: 193 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 252

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           LI+MY++CG +  +R +FD M E +V++W AM+ GYG HG G E + LF  +    V+P+
Sbjct: 253 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPD 311

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           +VT +AVLS C+H GLV EG  +F ++ +E   L    H+ C++DL GR+G L +A   +
Sbjct: 312 SVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 371

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           +++  E   P++W ++LGAC++H N  +G  VA+ LL +EPEN G+YV+LSNIYA AG  
Sbjct: 372 ENMPFES-TPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMW 430

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
             V  VR +M++K + K  G S + +D+  + F   ++ HP+  +I   + E+    + A
Sbjct: 431 KDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAA 490

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           G+VP+    +H++++E++E  L  HSEKLA+ FGLM T PG+TIR++KNLR+CVDCH+  
Sbjct: 491 GFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFA 550

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KF+S    REI +RD+ RFH    G+C+C DYW
Sbjct: 551 KFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 179/366 (48%), Gaps = 33/366 (9%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M +   S   + + A I +C     L  GR VH  +  + Y   + +   LV  Y +   
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           +D AR V DRMP++SVV+W +MISGY Q     EA+ LF  M   G  P+  T   VL +
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C+    I  G+ VH  +V    + ++ + +SL++MYA+  N+ +AR +FD + E +V++ 
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 180

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMR 335
           TA+ISGY   G   EA++LF ++ + G++ N+VTF  +++A +    +  G +V A  +R
Sbjct: 181 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILR 240

Query: 336 QEYGLLPGVEHHV-----------------------------CMVDLFGRAGLLNEAYKF 366
           +E      +++ +                              M+  +GR GL +E    
Sbjct: 241 KELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISL 300

Query: 367 VKDVIGE-KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE--NPGHYVMLSNIYAL 423
            KD+  E KP      A+L  C      D G+++ + ++  +    + GHY  + ++   
Sbjct: 301 FKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGR 360

Query: 424 AGRMDR 429
           +GR+++
Sbjct: 361 SGRLEK 366


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 320/527 (60%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G ++YA R+F  I S     +N LI   S+++    SL  Y +M  S + P  +T  +++
Sbjct: 442 GSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLL 501

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
            +C+ +  L LG+ VH  +  +  + D  V  +L++ Y     +  A  +FD M DK++V
Sbjct: 502 SACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLV 561

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           +WN+M++GY QNGF + A+ LF  M  +GV P   + + V  AC+ L  + LGR  H + 
Sbjct: 562 SWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYA 621

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +   L+ N  +A S+I+MYA+ G+V ++ ++F+ + E +V +W AM+ GYG+HG   EA+
Sbjct: 622 LKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAI 681

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           +LF  M+  G  P+ +TF+ VL+AC H+GLV EG      M+  +G+ P ++H+ C++D+
Sbjct: 682 KLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDM 741

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
             RAG L+EA K   + + E+P   +W  +L +C++HKN ++G ++A  L   EPE P +
Sbjct: 742 LVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPEN 801

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+LSN+YA +G+ D V  VR  M +  L+K  G S +E++ K + F  G+ S     EI
Sbjct: 802 YVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEI 861

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
                 L     + GY P++ S  H+L EEE+   LR HSEKLA+ +GL+RTS G T+R+
Sbjct: 862 KSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRV 921

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+CVDCH+A K IS    REI+VRD  RFHHFK G CSC DYW
Sbjct: 922 YKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 204/448 (45%), Gaps = 53/448 (11%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV-S 100
           + T+++++    G    ++ +F  +   + F +N +I   S+     + L  + +MI  S
Sbjct: 119 LCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITES 178

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
            + P N+TF  V+K+CA +S + +G AVH  V  +    D+ V  ALV+FY  + +V  A
Sbjct: 179 GLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDA 238

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM----RDFGVNPDSTTCVCVLAA 216
            +VF  MP++++V+WNSMI  +  NG ++E   L   M     +    PD  T   VL  
Sbjct: 239 LRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPV 298

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           CA+  +I +G+ VH   +   LD  VV+  +L++MY++CG ++ A+ IF + +  NV++W
Sbjct: 299 CARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSW 358

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHG--VRPNNVTFVAVLSAC---------------- 318
             M+ G+   G   +  +L  +M A G  +R + VT +  +  C                
Sbjct: 359 NTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYS 418

Query: 319 --------------------AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
                               A  G +   HRVF S+R +      V     ++  + ++ 
Sbjct: 419 LKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKT-----VNSWNALIGGYSQSS 473

Query: 359 ---LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH-Y 414
              L  +AY F     G  P      ++L AC   K+  LG EV   ++    E     Y
Sbjct: 474 DPRLSLDAY-FQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVY 532

Query: 415 VMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           + L ++Y   G +    V+ + M  K L
Sbjct: 533 ISLLSLYIHCGELSTAHVLFDAMEDKTL 560


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/578 (37%), Positives = 337/578 (58%), Gaps = 17/578 (2%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   Y +ILK    L      +Q+H  ++  G+  +  + + L+ +    G + +A +I
Sbjct: 436 PNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKI 495

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   D   +  +I   ++ +  T++L  ++ M    I   N  F++ I +CA +  L
Sbjct: 496 FRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQAL 555

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           + GR +H    +SGY  DL +  ALV+ YA+   V  A   FD++  K  V+WNS++SG+
Sbjct: 556 DQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGF 615

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q+G+ +EA+ +F  M   G+  +S T    ++A A + ++ +G+ +H  I   G D   
Sbjct: 616 AQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSET 675

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            ++ +LI +YA+CG +               I+W +MI+GY  HG G EA++LF  M+  
Sbjct: 676 EVSNALITLYAKCGTIDD-------------ISWNSMITGYSQHGCGFEALKLFEDMKQL 722

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
            V PN+VTFV VLSAC+H GLV EG   F SM + + L+P  EH+ C+VDL GR+GLL+ 
Sbjct: 723 DVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSR 782

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A +FV++ +  +P   VW  +L AC +HKN D+G   A HLL +EP++   YV++SN+YA
Sbjct: 783 AKRFVEE-MPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYA 841

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
           ++G+ D  +  R +M  +G+KK  G S VEVD   + F  GD++HP  + IY+YL  L  
Sbjct: 842 VSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDF 901

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           R  E GYVP   S + + E  +++ +   HSE+LA+AFGL+  +    + + KNLR+C D
Sbjct: 902 RAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCED 961

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+ IK +S  T+R IIVRD  RFHHFK GSCSC DYW
Sbjct: 962 CHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 210/456 (46%), Gaps = 47/456 (10%)

Query: 4   KQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           ++P      ++L A   +  L   +Q H++ I AG      +   LL L      I  A 
Sbjct: 348 QKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAH 407

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
             F C    D+                  S   + +M +  I P+ +T+ +++K+C  L 
Sbjct: 408 EFFLCYGQLDNL---------------NKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLG 452

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
             +LG  +H  V  +G+  +++V + L++ YAK   +D A K+F R+ +  VV+W +MI+
Sbjct: 453 ATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIA 512

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY Q+    EA+ LF  M+D G+  D+      ++ACA +  +D GR +H      G   
Sbjct: 513 GYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSD 572

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           ++ +  +L+++YARCG V +A   FD +   + ++W +++SG+   GY  EA+ +F +M 
Sbjct: 573 DLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMN 632

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G+  N+ TF + +SA A+   V+ G ++   +R+  G     E    ++ L+ + G +
Sbjct: 633 KAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKT-GYDSETEVSNALITLYAKCGTI 691

Query: 361 N------------------EAYKFVKDV--IGEKPAPAVWTAMLGACKMHKNFDLGVEV- 399
           +                  EA K  +D+  +   P    +  +L AC      D G+   
Sbjct: 692 DDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYF 751

Query: 400 ----AEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
                 H L  +PE   HY  + ++   +G + R +
Sbjct: 752 RSMSEAHNLVPKPE---HYACVVDLLGRSGLLSRAK 784



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 202/428 (47%), Gaps = 41/428 (9%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           ++Q+HA  I +G+  S  +   L+ L    GF++ A+++F  + + DS  +  +I   S+
Sbjct: 183 VEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQ 242

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
             +  +++L + ++++S              +C  +     G+ +H  V   G+ S+ +V
Sbjct: 243 NGYEEEAMLLFCQIVLS--------------ACTKVEFFEFGKQLHGLVLKQGFSSETYV 288

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             ALV  Y++S N+  A ++F  M  +  V++NS+ISG  Q G+   A+ LF  M     
Sbjct: 289 CNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQ 348

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            PD  T   +L+ACA +G +  G+  H + +  G+  ++V+  SL+++Y +C ++  A E
Sbjct: 349 KPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHE 408

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
            F    +L+ +                ++ ++F +M+  G+ PN  T+ ++L  C   G 
Sbjct: 409 FFLCYGQLDNL---------------NKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGA 453

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
              G ++   + +  G    V     ++D++ + G L+ A K  + +  ++     WTAM
Sbjct: 454 TDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKHGKLDHALKIFRRL--KENDVVSWTAM 510

Query: 384 LGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
           +     H  F   + + + +    ++ +N G     S I A AG +  ++  R I  Q  
Sbjct: 511 IAGYTQHDKFTEALNLFKEMQDQGIKSDNIG---FASAISACAG-IQALDQGRQIHAQSC 566

Query: 442 LKKHVGYS 449
           L    GYS
Sbjct: 567 LS---GYS 571



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 173/356 (48%), Gaps = 35/356 (9%)

Query: 93  FYRRMIVSNISPSNYTFSAVIKSCAHLSI-LNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
            +RRM+  N+      F+ V++ C+  ++       +H     SG++S   +   L++ Y
Sbjct: 150 LFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLY 209

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
            K+  +  A+KVF+ +  +  V+W +MISG  QNG+ +EA+ LF              C 
Sbjct: 210 FKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLF--------------CQ 255

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
            VL+AC ++   + G+ +H  ++ QG      +  +L+ +Y+R GN+S A +IF  MS+ 
Sbjct: 256 IVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQR 315

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           + +++ ++ISG    GY   A+ LF +M     +P+ VT  ++LSACA  G +  G + F
Sbjct: 316 DRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQ-F 374

Query: 332 ASMRQEYGLLPGVEHHVCMVDL----------------FGRAGLLNEAYKFVKDVIGEKP 375
            S   + G+   +     ++DL                +G+   LN++++    +  E  
Sbjct: 375 HSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGI 434

Query: 376 APAVWT--AMLGACKMHKNFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRMD 428
            P  +T  ++L  C      DLG ++   +L    + N     +L ++YA  G++D
Sbjct: 435 VPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLD 490



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 26/223 (11%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++FY    +++ A  VFD MP +S+  WN + + +          GLF  M    V  D
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 207 STTCVCVLAACAQLGDIDLGRWV---HEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
                 VL  C+  G+    R+V   H   +  G + +  +   LI++Y + G +S A++
Sbjct: 163 ERIFAVVLRGCS--GNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKK 220

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +F+ +   + ++W AMISG   +GY  EA+ LF ++              VLSAC     
Sbjct: 221 VFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEF 266

Query: 324 VQEGHRVFA-SMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEA 363
            + G ++    ++Q +      E +VC  +V L+ R+G L+ A
Sbjct: 267 FEFGKQLHGLVLKQGF----SSETYVCNALVTLYSRSGNLSSA 305


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/563 (38%), Positives = 321/563 (57%), Gaps = 7/563 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+  +++H  +      R R +   L+ +    G +  A+R+F  +   + F +  L+  
Sbjct: 57  LEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAG 116

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
             ++    +++  + RM      P        I SC     L+ GR +H      G DSD
Sbjct: 117 FVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSD 176

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           L    A++N Y K  ++  A  VF RMP+K+V++W++MI+ + QN  A EA+  F LM+ 
Sbjct: 177 LVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQ 236

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G+  D  T V VL A   +G ++LG+ +H  IV  GLD ++V+  +L+NMY +CG+   
Sbjct: 237 EGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDD 296

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           AR++FD M E NV++W AM++ YG +G   EA+ LF  M   GVRPN++TFV +L  C+H
Sbjct: 297 ARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSH 356

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA-- 378
           +G  ++    F  MRQ++G+ P   H  C++D+ GR+G L EA    +++I   P PA  
Sbjct: 357 SGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEA----EELIQAMPVPADA 412

Query: 379 -VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
            +WT++L AC  HK+ D     AE     EP     Y+MLSN+YA   + D    VR  M
Sbjct: 413 VLWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIMLSNLYAALKKWDEAAKVRKRM 472

Query: 438 IQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM 497
            Q G++K  G S +E+D++ + F  GD  HP+ + I++ L  LM   R  GY P+ +  +
Sbjct: 473 EQAGVRKQAGRSWIEIDKQVHEFVAGDSIHPDKSRIFKTLQRLMSEMRIKGYEPDRKVVI 532

Query: 498 HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNRE 557
           H +EEEE++  L YHSEKLA+AFG+  T P   + IVKNLR+C DCHSAIKFIS    R 
Sbjct: 533 HSMEEEEKDEVLFYHSEKLAVAFGIASTPPRTPLCIVKNLRVCSDCHSAIKFISGVEGRR 592

Query: 558 IIVRDRLRFHHFKRGSCSCLDYW 580
           I VRD  RFHHF RG CSC DYW
Sbjct: 593 ITVRDSNRFHHFDRGECSCGDYW 615



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 145/276 (52%), Gaps = 5/276 (1%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           +I+ CA    L  GR +H  +     D    +   LV+ Y K  ++  A++VFD M  K+
Sbjct: 47  LIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKN 106

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           V +W  +++G+ Q+G   EAI LF+ M   G  PD    +  + +C     +  GR +H 
Sbjct: 107 VFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHS 166

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
                G+D ++V A ++INMY +CG++ +A  +F  M E NVI+W+ MI+ +  +    E
Sbjct: 167 AAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADE 226

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY-GLLPGVEHHVCM 350
           A+  F  M+  G+  + +T+V+VL A    G ++ G  +   +R  Y GL   +     +
Sbjct: 227 ALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALH--VRIVYAGLDTSIVVGNTL 284

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           V+++G+ G  ++A + V D + EK   + W AML A
Sbjct: 285 VNMYGKCGSPDDA-RDVFDSMVEKNVVS-WNAMLAA 318



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 12/288 (4%)

Query: 9   PAYEAILK------AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P   A+LK      A   L   +++H+     G          ++++    G I  A  +
Sbjct: 140 PDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAV 199

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P  +   ++T+I    +   + ++LLF++ M    +     T+ +V+ +   +  L
Sbjct: 200 FTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGAL 259

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            LG+A+H  +  +G D+ + V   LVN Y K  + D AR VFD M +K+VV+WN+M++ Y
Sbjct: 260 ELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAY 319

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ---GLD 239
            QNG ++EA+ LF+ M   GV P+  T V +L  C+  G       V  F+  +   G+ 
Sbjct: 320 GQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDA--VSHFVEMRQDFGIT 377

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
              V    LI+M  R G + +A E+   M    + + WT+++     H
Sbjct: 378 PREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTH 425


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 349/618 (56%), Gaps = 42/618 (6%)

Query: 2   KNKQPHSPAYEAILKAGPRLK-------PLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAG 54
           +  +P +  + A+LKA  R         P + VHAH++  G GR+  + + L++     G
Sbjct: 13  RGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYTAGG 72

Query: 55  FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
               A+ +     +P    +N LI  +++     +S   +  M  +  +P+  T+ +V+ 
Sbjct: 73  DGAAARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLS 130

Query: 115 SCAHLS-ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN----------------- 156
           +C   +  + LG  VH  V  SG   DL V+ ALV+ YA+  +                 
Sbjct: 131 ACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVV 190

Query: 157 --------------VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
                         VD AR +FDRMP++  V+W +MI GY      +EA+ +F  M+   
Sbjct: 191 SWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSN 250

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           V+ D  T V V+ ACAQLG +++G WV  ++  QG+ ++  +  +LI+MY++CG++ +A 
Sbjct: 251 VSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERAL 310

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           ++F  M   +   WTA+I G  ++GY  EA+E+FHRM      P+ VTF+ VL+AC HAG
Sbjct: 311 DVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAG 370

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           LV +G   F SM + Y + P V H+ C++DL GRAG + EA   + D +   P   +W  
Sbjct: 371 LVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTI-DQMPMTPNSTIWGT 429

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +L AC++H N ++G  VAE LL ++PEN   Y++LSNIYA   R + V  +R+ +++KG+
Sbjct: 430 LLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGI 489

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
           KK  G S +E+D   + F  GD+SHP + EIY  L+ ++      GY P+      E+ E
Sbjct: 490 KKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAE 549

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           +E++  L +HSEKLA+AF L+ + P   IRIVKNLRMC+DCH+AIK IS    RE++VRD
Sbjct: 550 KEKKKVLYWHSEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRD 609

Query: 563 RLRFHHFKRGSCSCLDYW 580
           R RFHHF+ G CSC DYW
Sbjct: 610 RTRFHHFRHGFCSCKDYW 627



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 170/379 (44%), Gaps = 44/379 (11%)

Query: 89  DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS----ILNLGRAVHCHVFVSGYDSDLHVQ 144
           D++  Y RM+     P  YTF A++K+ A  +         RAVH HV   G   + HV 
Sbjct: 2   DAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVA 61

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ++LV  Y    +   AR +       + VAWN++ISG+ + G   E+ G F  M   G  
Sbjct: 62  SSLVAAYTAGGDGAAARALVGEC--DTPVAWNALISGHNRGGRFGESCGSFVDMARAGAA 119

Query: 205 PDSTTCVCVLAACAQ-LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           P   T V VL+AC +   D+ LG  VH  +VG G+  ++ +  +L++MYA C ++  A +
Sbjct: 120 PTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWK 179

Query: 264 IFDMMSELNVIAWT-------------------------------AMISGYGMHGYGTEA 292
           +FD M   +V++WT                               AMI GY       EA
Sbjct: 180 VFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREA 239

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           +E+F  M+   V  +  T V+V++ACA  G ++ G  V   M ++ G+         ++D
Sbjct: 240 LEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQ-GIKMDAFVGNALID 298

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           ++ + G +  A    K +         WTA++    ++   +  +E+   ++ V  E P 
Sbjct: 299 MYSKCGSIERALDVFKGM--HHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVS-ETPD 355

Query: 413 HYVMLSNIYAL--AGRMDR 429
               +  + A   AG +D+
Sbjct: 356 EVTFIGVLTACTHAGLVDK 374


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/544 (36%), Positives = 333/544 (61%), Gaps = 1/544 (0%)

Query: 37  GRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRR 96
           G++  M   +++ +     +  A+ +F  I   DS  + T++   ++    +++L  +RR
Sbjct: 208 GKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRR 267

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M    +    YTF +++ +C  L+ L  G+ +H ++  + Y+ ++ V +ALV+ Y+K  +
Sbjct: 268 MRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRS 327

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           V +A  VF RM  K++++W +MI GY QNG  +EA+ +F+ M+  G+ PD  T   V+++
Sbjct: 328 VRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISS 387

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           CA L  ++ G   H   +  GL   V ++ +L+ +Y +CG++  A  +FD MS  + ++W
Sbjct: 388 CANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSW 447

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           TA++ GY   G   E ++LF +M + GV+P+ VTF+ VLSAC+ +GLV +G   F SM+Q
Sbjct: 448 TALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQ 507

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
           ++ ++P  +H+ CM+DL+ R+G L +A +F+K  +   P    W  +L AC++  + ++G
Sbjct: 508 DHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQ-MPRCPDAFGWATLLSACRLRGDMEIG 566

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQK 456
              AE+LL ++P+NP  YV+L +++A  G  + V  +R  M  + +KK  G S ++   K
Sbjct: 567 KWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNK 626

Query: 457 NYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKL 516
            ++FS  D+SHP +  IY+ L  L  +  E GY P+  S +H++ + E+ + L +HSEKL
Sbjct: 627 VHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKL 686

Query: 517 ALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSC 576
           A+AFGL+   P M IRIVKNLR+CVDCH+A KFIS  T R+I+VRD +RFH F  G CSC
Sbjct: 687 AIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSC 746

Query: 577 LDYW 580
            D+W
Sbjct: 747 GDFW 750



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 199/409 (48%), Gaps = 38/409 (9%)

Query: 37  GRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRR 96
           GR+      LLS +  AG +   +R+F  +P  D+  +N L+   S+A     +   Y  
Sbjct: 74  GRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVA 133

Query: 97  MI--VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154
           ++   + + PS  T S V+   + L    LGR VHC +   G+ +     + LV+ YAK 
Sbjct: 134 LLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKV 193

Query: 155 NNVDVARKVFDRMPDKSVV-------------------------------AWNSMISGYE 183
             +  AR+VFD M  K+VV                                W +M++G  
Sbjct: 194 GPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLT 253

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG   EA+ +F  MR  GV  D  T   +L AC  L  ++ G+ +H +I     + NV 
Sbjct: 254 QNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVF 313

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           + ++L++MY++C +V  A  +F  M   N+I+WTAMI GYG +G G EAV +F  M+  G
Sbjct: 314 VGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDG 373

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           ++P++ T  +V+S+CA+   ++EG + F  +    GL P V     +V L+G+ G + +A
Sbjct: 374 IKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDA 432

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPEN 410
           ++   ++         WTA++            +++ E +LS  V+P+ 
Sbjct: 433 HRLFDEMSFHDQVS--WTALVMGYAQFGKAKETIDLFEKMLSKGVKPDG 479


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/619 (37%), Positives = 353/619 (57%), Gaps = 47/619 (7%)

Query: 4   KQPHSPAYE---AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           K  HS  Y    +++ +   ++ ++Q HA LI            KLL L   A  ++YA 
Sbjct: 9   KPFHSDHYSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLAACAS-LSYAH 67

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFST-DSLLFYRRMIVS-NISPSNYTFSAVIKSCAH 118
           ++F  IP PD F++NT+I  +S +  S  +SL+ +R +     + P+ Y+F     +C +
Sbjct: 68  KLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGN 127

Query: 119 LSILNLGRAVHCH-------------------------------VFVSGYDSDLHVQAAL 147
              +  G  V  H                               VF    D DL+    L
Sbjct: 128 GLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTL 187

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
           +  Y  S N+ +A+++FD M ++ VV+W+++I+GY Q G   EA+  F+ M   G  P+ 
Sbjct: 188 IAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNE 247

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV-SKAREIFD 266
            T V  LAAC+ L  +D G+W+H +I    + +N  L  S+I+MYA+CG + S +R  F+
Sbjct: 248 YTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFE 307

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
              +  V  W AMI G+ MHG   EA+ +F +M+   + PN VTF+A+L+AC+H  +V+E
Sbjct: 308 HKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEE 367

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-AP--AVWTAM 383
           G   F  M  +Y + P +EH+ CMVDL  R+GLL EA    +D+I   P AP  A+W A+
Sbjct: 368 GKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEA----EDMISSMPMAPDVAIWGAL 423

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI-MIQKGL 442
           L AC+++K+ + G  +   +  ++P + G +V+LSNIY+ +GR +   ++R    I +  
Sbjct: 424 LNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILREKNEISRDR 483

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
           KK  G S++E+    + F +GD+SHP + EIY +LDE+  + + AGYVPE    +H++++
Sbjct: 484 KKIPGCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGELLHDIDD 543

Query: 503 EE-REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
           EE +E +L  HSEKLA+AFGLM T+ G  IRIVKNLR+C DCH A KFIS   NR IIVR
Sbjct: 544 EEDKETALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFISKVYNRVIIVR 603

Query: 562 DRLRFHHFKRGSCSCLDYW 580
           DR R+HHF+ G CSC DYW
Sbjct: 604 DRTRYHHFEDGICSCKDYW 622


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/577 (38%), Positives = 349/577 (60%), Gaps = 7/577 (1%)

Query: 8   SPAYEAILKA--GPR-LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           +  Y+A++ A  G R ++ +++V  ++I +G+     ++ ++L +    G +  A+++F 
Sbjct: 118 ASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFD 177

Query: 65  CIPSPDSFLFNTLII-RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123
            +P  D   + T++       NFS    LF       N   S  TF+ +I++ A L ++ 
Sbjct: 178 EMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSR-TFATMIRASAGLGLVQ 236

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
           +G+ +H      G   D  V  AL++ Y+K  +++ A  VFD+MP+K+ V WNS+I+ Y 
Sbjct: 237 VGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYA 296

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
            +G+++EA+ L+  MRD G   D  T   V+  CA+L  ++  +  H  +V  G   ++V
Sbjct: 297 LHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIV 356

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
             T+L++ Y++ G +  AR +F+ M   NVI+W A+I+GYG HG G EAVE+F +M   G
Sbjct: 357 ANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEG 416

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           V P +VTF+AVLSAC+++GL Q G  +F SM++++ + P   H+ CM++L GR  LL+EA
Sbjct: 417 VTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEA 476

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
           Y  ++     KP   +W A+L AC+MHKN +LG   AE L  +EPE   +Y++L N+Y  
Sbjct: 477 YALIRTA-PFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIVLLNLYNS 535

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
           +G++     +   + +KGL+     S VEV ++ Y F  GDKSH  T EIYQ +D LM  
Sbjct: 536 SGKLKEAAGILQTLKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQTKEIYQKVDNLMVE 595

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
             + GY  E+E+ + +++EEE+   L+YHSEKLA+AFGL+ T     ++I +  R+C DC
Sbjct: 596 ICKHGYAEENETLLPDVDEEEQRI-LKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDC 654

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           HSAIK I++ T REI+VRD  RFHHF+ GSCSC DYW
Sbjct: 655 HSAIKLIAMVTGREIVVRDASRFHHFRNGSCSCGDYW 691



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 106/208 (50%), Gaps = 13/208 (6%)

Query: 189 KEAIGLFNLMR----DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           +EA+ LF ++      +GV   ++T   +++AC  L  I   + V  +++  G + ++ +
Sbjct: 98  REAMELFEILELEHDGYGVG--ASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYV 155

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
              ++ M+ +CG +  AR++FD M E +V +W  M+ G    G  +EA  LF  M     
Sbjct: 156 MNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFN 215

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV--CMVDLFGRAGLLNE 362
              + TF  ++ A A  GLVQ G ++ +   +  G+  G +H V   ++D++ + G + +
Sbjct: 216 DGRSRTFATMIRASAGLGLVQVGKQIHSCALKR-GV--GDDHFVSCALIDMYSKCGSIED 272

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           A+  V D + EK     W +++ +  +H
Sbjct: 273 AH-CVFDQMPEKTTVG-WNSIIASYALH 298


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/573 (37%), Positives = 348/573 (60%), Gaps = 5/573 (0%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           YEA + A    + L   +QVHA +I A Y  +  + T+L+++    G +  A+ +   +P
Sbjct: 45  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 104

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
                 + T+I   S+     ++L  + +M+ +   P+ YT + V+ SC+    +  G+ 
Sbjct: 105 ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 164

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           VH  +  + ++S + V ++L++ YAKS N+  AR+VFD +P++ VV+  ++ISGY Q G 
Sbjct: 165 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 224

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            +EA+ LF  +   G+  +  T   ++ A + L  +D G+ VH  I+ + L   V L  S
Sbjct: 225 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 284

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           LI+MY++CG +  +R +FD M E +V++W AM+ GYG HG G E + LF  +    V+P+
Sbjct: 285 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPD 343

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           +VT +AVLS C+H GLV EG  +F ++ +E   L    H+ C++DL GR+G L +A   +
Sbjct: 344 SVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 403

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           +++  E   P++W ++LGAC++H N  +G  VA+ LL +EPEN G+YV+LSNIYA AG  
Sbjct: 404 ENMPFES-TPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMW 462

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
             V  VR +M++K + K  G S + +D+  + F   ++ HP+  +I   + E+    + A
Sbjct: 463 KDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAA 522

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           G+VP+    +H++++E++E  L  HSEKLA+ FGLM T PG+TIR++KNLR+CVDCH+  
Sbjct: 523 GFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFA 582

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KF+S    REI +RD+ RFH    G+C+C DYW
Sbjct: 583 KFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 179/366 (48%), Gaps = 33/366 (9%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M +   S   + + A I +C     L  GR VH  +  + Y   + +   LV  Y +   
Sbjct: 33  MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 92

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           +D AR V DRMP++SVV+W +MISGY Q     EA+ LF  M   G  P+  T   VL +
Sbjct: 93  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 152

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C+    I  G+ VH  +V    + ++ + +SL++MYA+  N+ +AR +FD + E +V++ 
Sbjct: 153 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 212

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMR 335
           TA+ISGY   G   EA++LF ++ + G++ N+VTF  +++A +    +  G +V A  +R
Sbjct: 213 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILR 272

Query: 336 QEYGLLPGVEHHV-----------------------------CMVDLFGRAGLLNEAYKF 366
           +E      +++ +                              M+  +GR GL +E    
Sbjct: 273 KELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISL 332

Query: 367 VKDVIGE-KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE--NPGHYVMLSNIYAL 423
            KD+  E KP      A+L  C      D G+++ + ++  +    + GHY  + ++   
Sbjct: 333 FKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGR 392

Query: 424 AGRMDR 429
           +GR+++
Sbjct: 393 SGRLEK 398


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/578 (38%), Positives = 333/578 (57%), Gaps = 4/578 (0%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P S  +  +LKA  RL        +H+ +   G+     + T ++      GF+  A ++
Sbjct: 102 PDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKV 161

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   +   +  +I    +     +++  +R ++ S + P  +    V+++CA L  L
Sbjct: 162 FDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDL 221

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             GR +   +   G   ++ V  +LV+ Y K  +++ AR VFD M +K +V W++MI GY
Sbjct: 222 ESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGY 281

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
             NG  +EAI LF  MR   V PD    V  L++CA LG ++LG W    +  +    N 
Sbjct: 282 ASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNP 341

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           VL TSLI+ YA+CG++ +A  ++ MM E + + + A+ISG  M+G    A  +F +M   
Sbjct: 342 VLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKF 401

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+ PN  TFV +L  C HAGLV +G   F SM  ++ + P +EH+ CMVDL  RAG L+E
Sbjct: 402 GIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDE 461

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A+  +K  +  K    VW ++LG C++H+   L   V + L+ +EP N GHYV+LSNIY+
Sbjct: 462 AHNLIKG-MPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYS 520

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            + R D  E +R+ + +KG++K  GYS VEVD   + F +GD SHP + +IY+ L+ L  
Sbjct: 521 ASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFK 580

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             +EAGY P +E  + ++EEEE+E+ L  HSEKLA+AF L+ T     IR+VKNLR+C D
Sbjct: 581 DLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGD 640

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH AIK IS  T REI++RD  RFH F  G+CSC DYW
Sbjct: 641 CHEAIKHISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/354 (35%), Positives = 197/354 (55%), Gaps = 6/354 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLL-SLVCDAGFITYAQRIFFCIPS-PDSFLFNTLI 78
           LK  +  H  L+         +L+ +L S +  +    Y   +F   P+  ++FL+NT+I
Sbjct: 17  LKHAKLAHCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPILVFHKTPTNSNTFLYNTMI 76

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
                 +   +++  Y  M  + I P ++TFS V+K+CA L++ +LG  +H  VF +G+D
Sbjct: 77  RGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFD 136

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
            D+ V+  +V FY+K   +  A KVFD M  K+VV+W  MI G  + G  +EA+ LF  +
Sbjct: 137 CDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGL 196

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
            + G+ PD    V VL ACA+LGD++ GRW+   +   GL  NV +ATSL++MY +CG++
Sbjct: 197 LESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSM 256

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
            +AR +FD M E +++ W+AMI GY  +G   EA+ELF  MR   VRP+    V  LS+C
Sbjct: 257 EEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSC 316

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA---YKFVKD 369
           A  G ++ G+     M  E   L        ++D + + G + EA   YK +K+
Sbjct: 317 ASLGALELGNWAKGLMNYEE-FLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKE 369


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/614 (37%), Positives = 347/614 (56%), Gaps = 36/614 (5%)

Query: 2   KNKQPHSPAYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           +   P +  +  +LKA   G    P++ VHAH++  G GR+  + T L++     G    
Sbjct: 37  RGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAA 96

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+ +          ++N LI  +++     ++   +  M  +  +P+  T+ +V+ +C  
Sbjct: 97  ARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGK 156

Query: 119 -LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN--------------------- 156
               + LG  VH  V  SG   DL V+ ALV+ YA+  +                     
Sbjct: 157 GTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTS 216

Query: 157 ----------VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
                     VD AR +F RMP++  V+W +MI GY Q    +EA+ +F  M+   V+ D
Sbjct: 217 LLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSAD 276

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T V V+ ACAQLG +++G WV  ++  QG+ ++  +  +LI+MY++CG++ +A ++F 
Sbjct: 277 EFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFK 336

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M   +   WTA+I G  ++GYG EA+E+FHRM      P+ VTF+ VL+AC HAGLV +
Sbjct: 337 DMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDK 396

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G   F SMR+ Y + P V H+ C++DLFGRAG + EA   + D +   P   +W  +L A
Sbjct: 397 GREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAI-DQMPMTPNSTIWGTLLAA 455

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C++H N ++G  V E LL ++PEN   Y +LSNIYA   R + V  +R+ +++KG+KK  
Sbjct: 456 CRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEP 515

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
           G S +E++   + F  GD+SHP + EIY  L+ ++      GY P+      E+ EEE++
Sbjct: 516 GCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQ 575

Query: 507 YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
             L +HSEKLA+AF L+ + P   IRIVKNLRMC+DCH+AIK IS    RE++VRDR RF
Sbjct: 576 KVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRF 635

Query: 567 HHFKRGSCSCLDYW 580
           HHF+ G CSC DYW
Sbjct: 636 HHFRHGFCSCKDYW 649



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 169/375 (45%), Gaps = 38/375 (10%)

Query: 89  DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
           D++  Y RM+     P  YTF  ++K+ A  S     RAVH HV   G   + HV  +LV
Sbjct: 26  DAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLV 85

Query: 149 NFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
             YA   +   AR +       + V WN++ISG+ +     EA   F  M   G  P   
Sbjct: 86  TAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPV 145

Query: 209 TCVCVLAACAQ-LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC------------ 255
           T V VL+AC +  GD+ LG  VH  +VG G+  ++ +  +L++MYA C            
Sbjct: 146 TYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDG 205

Query: 256 -------------------GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
                              G V +AR++F  M E + ++WTAMI GY       EA+E+F
Sbjct: 206 MQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMF 265

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
             M+   V  +  T V+V++ACA  G ++ G  V   M ++ G+         ++D++ +
Sbjct: 266 REMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQ-GIKMDAFVGNALIDMYSK 324

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
            G +  A    KD+         WTA++    ++   +  +E+   ++ V  E P     
Sbjct: 325 CGSIERALDVFKDM--HHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVS-ETPDEVTF 381

Query: 417 LSNIYAL--AGRMDR 429
           +  + A   AG +D+
Sbjct: 382 IGVLTACTHAGLVDK 396



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 128/316 (40%), Gaps = 46/316 (14%)

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           AR++ + +P + +VA              ++A+  +  M   G  PD+ T   +L A A+
Sbjct: 8   ARRLLEGIPRRCLVAAR------------EDAVAGYARMLARGAMPDAYTFPPLLKAVAR 55

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
                  R VH  +V  G+  N  +ATSL+  YA  G+ + AR +         + W A+
Sbjct: 56  GSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNAL 115

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA-GLVQEGHRVFASMRQEY 338
           ISG+       EA   F  M   G  P  VT+V+VLSAC    G V  G +V   +    
Sbjct: 116 ISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGS- 174

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKF---------------------------VKDVI 371
           G+LP +     +VD++     +  A+K                             +D+ 
Sbjct: 175 GVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLF 234

Query: 372 GEKPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRM 427
           G  P      WTAM+        F   +E+    +     +   + M+S I A A  G +
Sbjct: 235 GRMPERDTVSWTAMIDGYVQAARFREALEMFRE-MQCSNVSADEFTMVSVITACAQLGAL 293

Query: 428 DRVEVVRNIMIQKGLK 443
           +  E VR  M ++G+K
Sbjct: 294 EMGEWVRVYMSRQGIK 309


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/605 (35%), Positives = 348/605 (57%), Gaps = 26/605 (4%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFIT 57
           +  +P    + + L A  +L+ L   +++HA+++      + S + + L+ +      + 
Sbjct: 265 RGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVG 324

Query: 58  YAQRIFFCIPSPDS--FLFNTLIIRNSKANFSTDSLLFYRRMIV-SNISPSNYTFSAVIK 114
            A+R+F  +P       L+N ++   ++A    ++L  + RM   + + PS  T + V+ 
Sbjct: 325 VARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLP 384

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           +CA         AVH +V   G   +  VQ AL++ YA+  +++ AR +F  +  + VV+
Sbjct: 385 ACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVS 444

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFG------------------VNPDSTTCVCVLAA 216
           WN++I+G    G   +A  L   M+  G                  V P++ T + +L  
Sbjct: 445 WNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPG 504

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           CA L     G+ +H + +   LD ++ + ++L++MYA+CG ++ +R +FD + + NVI W
Sbjct: 505 CAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITW 564

Query: 277 TAMISGYGMHGYGTEAVELFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
             +I  YGMHG G EA+ LF RM  ++  +PN VTF+A L+AC+H+G+V  G  +F SM+
Sbjct: 565 NVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMK 624

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
           + +G+ P  + H C VD+ GRAG L+EAY  +  +   +   + W++ LGAC++H+N  L
Sbjct: 625 RNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPL 684

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
           G   AE L  +EP+   HYV+L NIY+ AG  ++   VRN M Q+G+ K  G S +E+D 
Sbjct: 685 GEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDG 744

Query: 456 KNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEK 515
             + F  G+ +HP +  ++ ++D L  R R  GY P++ S +H++EE E+   LRYHSEK
Sbjct: 745 VIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEK 804

Query: 516 LALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCS 575
           LA+AFGL+RT PG TIR+ KNLR+C DCH A KFIS    REI++RD  RFHHF  G+CS
Sbjct: 805 LAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACS 864

Query: 576 CLDYW 580
           C DYW
Sbjct: 865 CGDYW 869



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 240/531 (45%), Gaps = 54/531 (10%)

Query: 25  QQVHAHLIVAGY--GRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS-----FLFNTL 77
           ++ HA  +  G+  G  R     LLS+    G +  AQ +F  + + DS       +NT+
Sbjct: 183 REAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTM 242

Query: 78  IIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
           +    ++    +++     M+   + P   TF++ + +C+ L +L+LGR +H +V     
Sbjct: 243 VSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVL---K 299

Query: 138 DSDL----HVQAALVNFYAKSNNVDVARKVFDRMPD--KSVVAWNSMISGYEQNGFAKEA 191
           DSDL     V +ALV+ YA    V VAR+VFD +P   + +  WN+M+ GY Q G  +EA
Sbjct: 300 DSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEA 359

Query: 192 IGLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           + LF  M  + GV P  TT   VL ACA+         VH +++ +G+  N  +  +L++
Sbjct: 360 LELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMD 419

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG------- 303
           +YAR G++  AR IF  +   +V++W  +I+G  + G+  +A +L   M+  G       
Sbjct: 420 LYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATT 479

Query: 304 -----------VRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMV 351
                      V PNNVT + +L  CA      +G  +   +MR  + L   +     +V
Sbjct: 480 EDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMR--HALDSDIAVGSALV 537

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
           D++ + G L       + V    P   V  W  ++ A  MH   D  + + + ++     
Sbjct: 538 DMYAKCGCL----ALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEA 593

Query: 410 NPGHYVMLSNIYAL--AGRMDR-VEVVRNIMIQKGLKKHVGYSTVEVD------QKNYLF 460
            P     ++ + A   +G +DR +E+  ++    G++         VD      + +  +
Sbjct: 594 KPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAY 653

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRY 511
           S+     P   ++  +    +G CR    VP  E A   L + E + +  Y
Sbjct: 654 SIITSMEPGEQQVSAW-SSFLGACRLHRNVPLGEIAAERLFQLEPDEASHY 703



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 189/392 (48%), Gaps = 37/392 (9%)

Query: 36  YGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYR 95
           +G + ++   LL+     G +T A  +F  +PS D+  FN+LI           +L   R
Sbjct: 92  HGFTPAVANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALR 151

Query: 96  RMIVSNISPSNYTFSAVIKSCAHLS-ILNLGRAVHCHVFVSGY-DSDLHVQ-AALVNFYA 152
            M++     S++T  +V+ +C+HL+  L LGR  H     +G+ D D      AL++ YA
Sbjct: 152 DMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYA 211

Query: 153 KSNNVDVARKVFDRM-----PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
           +   VD A+ +F  +     P   VV WN+M+S   Q+G   EAI +   M   GV PD 
Sbjct: 212 RLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDG 271

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQG-LDVNVVLATSLINMYARCGNVSKAREIFD 266
            T    L AC+QL  + LGR +H +++    L  N  +A++L++MYA    V  AR +FD
Sbjct: 272 ITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFD 331

Query: 267 MM--SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHAGL 323
           M+      +  W AM+ GY   G   EA+ELF RM A  GV P+  T   VL ACA +  
Sbjct: 332 MVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARS-- 389

Query: 324 VQEGHRVFASMRQEYGLL--------PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
                  FA     +G +        P V++   ++DL+ R G + EA +++   I  +P
Sbjct: 390 -----ETFAGKEAVHGYVLKRGMADNPFVQN--ALMDLYARLGDM-EAARWIFAAI--EP 439

Query: 376 APAV-WTAMLGAC----KMHKNFDLGVEVAEH 402
              V W  ++  C     +H  F L  E+ + 
Sbjct: 440 RDVVSWNTLITGCVVQGHIHDAFQLVREMQQQ 471


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/562 (37%), Positives = 329/562 (58%), Gaps = 36/562 (6%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+  F  I      ++N +I    ++    ++   +RRM+   I P  +TF++++
Sbjct: 244 GDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLL 303

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYD----SDLHVQAALVNFYAKSNNVDVARKVFDRMPD 169
            +CA+      G++VH        D    + L V  ALV  Y+KS  + VA K+FD M  
Sbjct: 304 SACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTL 363

Query: 170 KSVVAWNS-------------------------------MISGYEQNGFAKEAIGLFNLM 198
           K VV+WN+                               M+SGY   G A++A+ LFN M
Sbjct: 364 KDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQM 423

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
           R   V P   T    +AAC +LG +  G+ +H  +V  G + +     +L+ MYARCG V
Sbjct: 424 RSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAV 483

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
             AR +F +M  ++ ++W AMIS  G HG+G EA+ELF +M A G+ P+ ++F+ +L+AC
Sbjct: 484 KDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTAC 543

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
            HAGLV +G + F SM +++G+ PG +H+  ++DL GRAG + EA   +K +  E P PA
Sbjct: 544 NHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFE-PTPA 602

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
           +W A+L  C+++ + +LG   A+ L  + PE+ G Y++LSN Y+ AGR      VR +M 
Sbjct: 603 IWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMR 662

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
            +G+KK  G S +EV  K ++F +GD  HP+ +E+Y++L+ +  + R+ GYVP+++ A+ 
Sbjct: 663 DRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQ 722

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
           ++   E+EY L  HSE+LA++FGL++   G T+ ++KNL++C DCH+A+ F+S A  REI
Sbjct: 723 DMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREI 782

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           +VRD  RFHHFK G CSC +YW
Sbjct: 783 VVRDVRRFHHFKDGECSCGNYW 804



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 194/441 (43%), Gaps = 86/441 (19%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSP--DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN 101
           T L+S    AG +  +   F  +P    D+ L N +I   ++A+ +  ++  +R ++ S+
Sbjct: 93  TSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASD 152

Query: 102 IS--PSNYTFSAVIKSCAHLSILNLGRA--VHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
            S  P +Y+F++++ +   +  L +     +HC V   G  + L V  AL+  Y K +  
Sbjct: 153 DSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAP 212

Query: 158 DV---ARKVFDRMPDKSV-------------------------------VAWNSMISGYE 183
            V   ARKV D MP+K                                 V WN+MISGY 
Sbjct: 213 GVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYV 272

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH--------EFIVG 235
           Q+G   EA  LF  M    + PD  T   +L+ACA  G    G+ VH        +F+  
Sbjct: 273 QSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPE 332

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA----------------- 278
             L VN     +L+ +Y++ G ++ A +IFD M+  +V++W                   
Sbjct: 333 AALPVN----NALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARI 388

Query: 279 --------------MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
                         M+SGY   G   +A++LF++MR+  V+P + T+   ++AC   G +
Sbjct: 389 FKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGAL 448

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           + G ++ A + Q  G          ++ ++ R G + +A + V  V+    + + W AM+
Sbjct: 449 KHGKQLHAHLVQ-CGFEASNSAGNALLTMYARCGAVKDA-RLVFLVMPNVDSVS-WNAMI 505

Query: 385 GACKMHKNFDLGVEVAEHLLS 405
            A   H +    +E+ + +++
Sbjct: 506 SALGQHGHGREALELFDQMVA 526



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 142/300 (47%), Gaps = 17/300 (5%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           +LS   ++G +  A RIF  +P      +  ++        + D+L  + +M   ++ P 
Sbjct: 372 ILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPC 431

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           +YT++  + +C  L  L  G+ +H H+   G+++      AL+  YA+   V  AR VF 
Sbjct: 432 DYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFL 491

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP+   V+WN+MIS   Q+G  +EA+ LF+ M   G+ PD  + + +L AC   G +D 
Sbjct: 492 VMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDD 551

Query: 226 GRWVHE-----FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAM 279
           G    E     F +  G D        LI++  R G + +AR++   M  E     W A+
Sbjct: 552 GFQYFESMERDFGISPGEDHY----ARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAI 607

Query: 280 ISGYGMHG---YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           +SG  ++G    G  A +   +M    V  ++ T++ + +  + AG   +  RV   MR 
Sbjct: 608 LSGCRINGDMELGAYAADQLFKM----VPEHDGTYILLSNTYSAAGRWVDAARVRKLMRD 663



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 18/216 (8%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  +Q+HAHL+  G+  S S    LL++    G +  A+ +F  +P+ DS  +N +I  
Sbjct: 448 LKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISA 507

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
             +     ++L  + +M+   I P   +F  ++ +C H  +++ G       +    + D
Sbjct: 508 LGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDG-----FQYFESMERD 562

Query: 141 LHVQ------AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMISGYEQNGFAKEAIG 193
             +       A L++   ++  +  AR +   MP + +   W +++SG   NG     +G
Sbjct: 563 FGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRING--DMELG 620

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
            +   + F + P+      +L+          GRWV
Sbjct: 621 AYAADQLFKMVPEHDGTYILLSNTYSAA----GRWV 652



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDM--MSELNVIAWTAMISGYGMHGYGTEAVELF 296
           D   V ATSL++ YA  G +  +   FD   ++  + +   AMIS +        AV +F
Sbjct: 86  DPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVF 145

Query: 297 HRMRA--HGVRPNNVTFVAVLSA 317
             + A    +RP++ +F ++LSA
Sbjct: 146 RSLLASDDSLRPDDYSFTSLLSA 168


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/558 (37%), Positives = 346/558 (62%), Gaps = 5/558 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H + +  G  +   +   L+ +    G +  AQ +F  +   D   +N++I    +   
Sbjct: 191 MHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQ 250

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLHVQA 145
           +  +L  ++ M  S +SP   T  ++  + A        +++HC+V   G+D  D+    
Sbjct: 251 TAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGN 310

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVN 204
           A+V+ YAK +N++ A+++FD MP +  V+WN++I+GY QNG A EA+  +  M+   G+ 
Sbjct: 311 AIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLK 370

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
               T V VL A + LG +  G  +H   +  GL+V+V + T LI++YA+CG +++A  +
Sbjct: 371 AIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLL 430

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ M   +   W A+ISG G+HG+G EA+ LF RM+  G++P++VTFV++L+AC+HAGLV
Sbjct: 431 FEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLV 490

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            +G   F  M+  Y ++P  +H+ CM D+ GRAG L+EA+ F+++ +  KP  AVW A+L
Sbjct: 491 DQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQN-MPIKPDSAVWGALL 549

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GAC++H N ++G   +++L  ++PEN G+YV++SN+YA  G+ D V+ VR+++ ++ L+K
Sbjct: 550 GACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQK 609

Query: 445 HVGYSTVEVDQKNYLFSMGDKS--HPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
             G+S++EV +   +F  G+++  HP   EI   L  L+ + R  GYV +    + ++E+
Sbjct: 610 TPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVED 669

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           +E+E+ L  HSE+LA+AFG++ T     + I KNLR+C DCH+A K+IS  T REIIVRD
Sbjct: 670 DEKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRD 729

Query: 563 RLRFHHFKRGSCSCLDYW 580
             RFHHFK G CSC D+W
Sbjct: 730 SNRFHHFKDGHCSCGDFW 747



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 222/443 (50%), Gaps = 19/443 (4%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLT-KLLSLVCDAGFITYAQRIF 63
           +P    + ++++A P      Q+HA  +  G  R     +  L+      G I+ A ++F
Sbjct: 67  RPDGFTFPSLIRAAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVF 126

Query: 64  FCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
             +   D   +N ++    RN++A    +++  + RM+   ++    T S+V+  C  L 
Sbjct: 127 DEMSERDVPAWNAMLSGLCRNARA---AEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLG 183

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
              L   +H +    G D +L V  AL++ Y K   ++ A+ VF  M  + +V WNS+IS
Sbjct: 184 DQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIIS 243

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           G EQ G    A+ +F  MR  GV+PD  T V + +A AQ GD    + +H +++ +G DV
Sbjct: 244 GCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDV 303

Query: 241 NVVLA-TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
           + ++A  ++++MYA+  N+  A+ +FD M   + ++W  +I+GY  +G   EAVE +  M
Sbjct: 304 DDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHM 363

Query: 300 RAH-GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           + H G++    TFV+VL A +H G +Q+G R+ A +  + GL   V    C++DL+ + G
Sbjct: 364 QKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHA-LSIKIGLNVDVYVGTCLIDLYAKCG 422

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE--NPGHYVM 416
            L EA    + +      P  W A++    +H +   G E       ++ E   P H   
Sbjct: 423 KLAEAMLLFEKMPRRSTGP--WNAIISGLGVHGH---GAEALTLFSRMQQEGIKPDHVTF 477

Query: 417 LSNIYAL--AGRMDRVEVVRNIM 437
           +S + A   AG +D+     ++M
Sbjct: 478 VSLLAACSHAGLVDQGRSFFDVM 500



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 129/258 (50%), Gaps = 20/258 (7%)

Query: 75  NTLIIRNSKANFSTDSLLFYRRMI--VSNISPSNYTFSAVIKSCA--------HLSILNL 124
           NTLI   S+A     +    R ++       P  +TF ++I++          H   L L
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNASAAQLHACALRL 96

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G  V   VF SG         +LV+ Y +   +  A KVFD M ++ V AWN+M+SG  +
Sbjct: 97  G-LVRPSVFTSG---------SLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCR 146

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           N  A EA+GLF  M   GV  D+ T   VL  C  LGD  L   +H + V  GLD  + +
Sbjct: 147 NARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFV 206

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             +LI++Y + G + +A+ +F  M   +++ W ++ISG    G    A+++F  MR  GV
Sbjct: 207 CNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGV 266

Query: 305 RPNNVTFVAVLSACAHAG 322
            P+ +T V++ SA A  G
Sbjct: 267 SPDVLTLVSLASAIAQGG 284



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 111/267 (41%), Gaps = 39/267 (14%)

Query: 11  YEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           + ++L A   L  LQQ   +HA  I  G      + T L+ L    G +  A  +F  +P
Sbjct: 376 FVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMP 435

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
              +  +N +I          ++L  + RM    I P + TF +++ +C+H  +++ GR+
Sbjct: 436 RRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRS 495

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
                                 F+      DV +  +D +P     A  + + G  + G 
Sbjct: 496 ----------------------FF------DVMQVTYDIVPIAKHYACMADMLG--RAGQ 525

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV-NVVLAT 246
             EA   FN +++  + PDS     +L AC   G++++G+   + +    LD  NV    
Sbjct: 526 LDEA---FNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLF--ELDPENVGYYV 580

Query: 247 SLINMYARCGNVSKAREIFDMMSELNV 273
            + NMYA+ G      E+  ++   N+
Sbjct: 581 LMSNMYAKVGKWDGVDEVRSLVRRQNL 607


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/561 (36%), Positives = 338/561 (60%), Gaps = 1/561 (0%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
            L+ L+++H +    G   +  +    ++     G +  ++R+F  + +     +N L+ 
Sbjct: 322 ELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLC 381

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             ++ +    +L  Y +M  S + P  +T  +++ +C+ +  L+ G  +H     +G   
Sbjct: 382 GYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAV 441

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D  +  +L++ Y        A+ +FD M  +S+V+WN MI+GY QNG   EAI LF  M 
Sbjct: 442 DPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQML 501

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+ P     +CV  AC+QL  + LG+ +H F +   L  ++ +++S+I+MYA+ G + 
Sbjct: 502 SDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIG 561

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            ++ IFD + E +V +W  +I+GYG+HG G EA+ELF +M   G++P++ TF  +L AC+
Sbjct: 562 LSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACS 621

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           HAGLV++G   F  M   + + P +EH+ C+VD+ GRAG +++A + ++++ G+ P   +
Sbjct: 622 HAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGD-PDSRI 680

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W+++L +C++H N  LG +VA  LL +EPE P +YV++SN++A +G+ D V  VR  M  
Sbjct: 681 WSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKD 740

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
            GL+K  G S +EV  K + F +GD+  P   E+ +    L  +    GY P++ S +H+
Sbjct: 741 IGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHD 800

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           LEEE++   LR HSEKLA++FGL+ T+ G+ +R+ KNLR+C DCH+A KFIS   NR+I+
Sbjct: 801 LEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIV 860

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           VRD  RFHHF+ G CSC DYW
Sbjct: 861 VRDNKRFHHFRDGICSCGDYW 881



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 152/290 (52%), Gaps = 11/290 (3%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNI 102
           T+++++    G  + ++ +F  +   + F +N ++   ++     D++  +  +I V+  
Sbjct: 38  TRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEH 97

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
            P N+T   VIK+CA L  L LG+ +H         SD+ V  AL+  Y K   V+ A K
Sbjct: 98  KPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVK 157

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN-----PDSTTCVCVLAAC 217
           VF+ MP++++V+WNS+I G+ +NGF +E+   FN  R+  V      PD  T V VL  C
Sbjct: 158 VFEHMPERNLVSWNSIICGFSENGFLQES---FNAFREMLVGEESFVPDVATLVTVLPVC 214

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
           A   DI+ G  VH   V  GL+  +++  SLI+MY++C  +S+A+ +FD   + N+++W 
Sbjct: 215 AGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWN 274

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHG--VRPNNVTFVAVLSACAHAGLVQ 325
           +MI GY           L  +M+     ++ +  T + VL  C     +Q
Sbjct: 275 SMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQ 324



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 194/443 (43%), Gaps = 46/443 (10%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH   +  G      +   L+ +     F++ AQ +F      +   +N++I   ++   
Sbjct: 226 VHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREED 285

Query: 87  STDSLLFYRRMIVSN--ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
              +    ++M   +  +    +T   V+  C   S L   + +H + +  G  S+  V 
Sbjct: 286 VCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVA 345

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            A +  Y +   +  + +VFD M  K+V +WN+++ GY QN   ++A+ L+  M D G++
Sbjct: 346 NAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLD 405

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD  T   +L AC+++  +  G  +H F +  GL V+  +  SL+++Y  CG    A+ +
Sbjct: 406 PDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVL 465

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC------ 318
           FD M   ++++W  MI+GY  +G   EA+ LF +M + G++P  +  + V  AC      
Sbjct: 466 FDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSAL 525

Query: 319 -----------------------------AHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
                                        A  G +    R+F  +R++      V     
Sbjct: 526 RLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREK-----DVASWNV 580

Query: 350 MVDLFGRAGLLNEAYKFVKDV--IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
           ++  +G  G   EA +  + +  +G KP    +T +L AC      + G+E    +L++ 
Sbjct: 581 IIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLH 640

Query: 408 PENPG--HYVMLSNIYALAGRMD 428
              P   HY  + ++   AGR+D
Sbjct: 641 NIEPKLEHYTCVVDMLGRAGRID 663



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 142/279 (50%), Gaps = 7/279 (2%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSG-YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
           ++++C     + +GR +H  V  S  + +D  +   ++  Y+   +   +R VFD++  K
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLFN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           ++  WN+++S Y +N   ++A+ +F+ L+      PD+ T  CV+ ACA L D+ LG+ +
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 123

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           H       L  +V +  +LI MY +CG V +A ++F+ M E N+++W ++I G+  +G+ 
Sbjct: 124 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFL 183

Query: 290 TEAVELFHRMRA--HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
            E+   F  M        P+  T V VL  CA    +++G  V   +  + GL   +  +
Sbjct: 184 QESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHG-LAVKLGLNEELMVN 242

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
             ++D++ +   L+EA         +K     W +M+G 
Sbjct: 243 NSLIDMYSKCRFLSEAQLLFDK--NDKKNIVSWNSMIGG 279


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/558 (39%), Positives = 340/558 (60%), Gaps = 3/558 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           Q+VH H+I   Y  S  + T+L+ L      +  A+ +F  +P  +   +  +I   S+ 
Sbjct: 82  QRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQR 141

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            F+ ++L  +  M+ S+  P+++TF+ ++ SC        GR +H       Y+S + V 
Sbjct: 142 GFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVG 201

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ++L++ YAKS  +  A  VF  +P++ VVA  ++ISGY Q G  +EA+ LF  ++  G+N
Sbjct: 202 SSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMN 261

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +S T   VL A + L  ++ G+ VH  ++  G    VVL  SLI+MY++CGNV  AR I
Sbjct: 262 SNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRI 321

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGL 323
           FD M E   I+W AM+ GY  HG   E +ELF  MR    V+P+++T++AVLS C+H  L
Sbjct: 322 FDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQL 381

Query: 324 VQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
              G  +F +M   + G+ P + H+ C+VDL GRAG + EA+ F+K  +   P  A+W +
Sbjct: 382 EDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKK-MPFVPTAAIWGS 440

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LG+C++H + ++G+ V + LL +EPEN G+YV+LSN+YA AG+ + +  +R++M +K +
Sbjct: 441 LLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAV 500

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
            K  G S VE+DQ  + F   D +HP   E+   + EL  + +E GYVP+    +++++E
Sbjct: 501 TKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDE 560

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           E++E  L  HSEKLALAFGL+ T  G TIR++KNLR+CVDCHS  KF+S    R +I+RD
Sbjct: 561 EQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRD 620

Query: 563 RLRFHHFKRGSCSCLDYW 580
           + RFH+   G CSC DYW
Sbjct: 621 KNRFHNIVGGVCSCGDYW 638



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 178/364 (48%), Gaps = 52/364 (14%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           + +++  C     +  G+ VH H+  + Y   ++++  L+  Y K + +  AR +FD MP
Sbjct: 65  YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMP 124

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
            ++VV+W +MIS Y Q GFA EA+ LF  M      P+  T   +L +C      + GR 
Sbjct: 125 QRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 184

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H   + +  + ++ + +SL++MYA+ G +  A  +F  + E +V+A TA+ISGY   G 
Sbjct: 185 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 244

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACA-----------HAGLVQEGH--------- 328
             EA++LF +++  G+  N+VT+ +VL+A +           H+ +++ G          
Sbjct: 245 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS 304

Query: 329 ---------------RVFASMRQEY-----GLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
                          R+F SM +        +L G   H       G A  + E +K ++
Sbjct: 305 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKH-------GMAREVLELFKLMR 357

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS----VEPENPGHYVMLSNIYALA 424
           +    KP    + A+L  C   +  D+G+E+  ++++    +EP + GHY  + ++   A
Sbjct: 358 EENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEP-DIGHYGCVVDLLGRA 416

Query: 425 GRMD 428
           GR++
Sbjct: 417 GRVE 420


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/585 (36%), Positives = 342/585 (58%), Gaps = 24/585 (4%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           RL   +++HA+++        S + + L+ + C+   +   +R+F  I      L+N +I
Sbjct: 312 RLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMI 371

Query: 79  IRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
              ++      +L+ +  MI V+ + P+  T ++V+ +C H    +   ++H +    G+
Sbjct: 372 SGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGF 431

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
             D +VQ AL++ Y++   +D++  +FD M  +  V+WN+MI+GY  +G    A+ L + 
Sbjct: 432 KEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHE 491

Query: 198 MRDF-----------------GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           M+                      P++ T + VL  CA L  I  G+ +H + +   L  
Sbjct: 492 MQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLAS 551

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM- 299
           ++ + ++L++MYA+CG ++ +R +F+ M   NVI W  +I   GMHG G EA+ELF  M 
Sbjct: 552 DITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMV 611

Query: 300 ----RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355
               R    +PN VTF+ V +AC+H+GL+ EG  +F  M+ ++G+ P  +H+ C+VDL G
Sbjct: 612 AEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLG 671

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415
           RAG L EAY+ V  +  E      W+++LGAC++H+N +LG   A++LL +EP    HYV
Sbjct: 672 RAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYV 731

Query: 416 MLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQ 475
           +LSNIY+ AG  ++   VR  M Q G+KK  G S +E   + + F  GD SHP + +++ 
Sbjct: 732 LLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHG 791

Query: 476 YLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVK 535
           +L+ L  + R+ GYVP++   +H ++E+E+E  L  HSEKLA+AFG++ T PG TIR+ K
Sbjct: 792 FLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAK 851

Query: 536 NLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           NLR+C DCH+A KFIS    REIIVRD  RFHHFK G+CSC DYW
Sbjct: 852 NLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 168/325 (51%), Gaps = 10/325 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSR-SMLTKLLSLVCDAGFITYAQ 60
           +P + A+ A+LKA   L+ L   +Q+HA  +  GYG S  ++   L+++    G I    
Sbjct: 89  RPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVC 148

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           ++F  I   D   +N+ I    +      +L  +R M + N+  S++T  +V  +C++L 
Sbjct: 149 KVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLG 208

Query: 121 I---LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
           +   L LG+ +H +    G D       AL+  YAK   VD ++ +F+   D+ +V+WN+
Sbjct: 209 VMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNT 267

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV-GQ 236
           MIS + Q+    EA+  F LM   GV  D  T   VL AC+ L  +D+G+ +H +++   
Sbjct: 268 MISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNN 327

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
            L  N  + ++L++MY  C  V   R +FD +    +  W AMISGY  +G   +A+ LF
Sbjct: 328 DLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILF 387

Query: 297 HRM-RAHGVRPNNVTFVAVLSACAH 320
             M +  G+ PN  T  +V+ AC H
Sbjct: 388 IEMIKVAGLLPNTTTMASVMPACVH 412



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 151/322 (46%), Gaps = 7/322 (2%)

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           PS  +  +   +   +++N   +++  Y  M VS   P N+ F AV+K+ + L  L  G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 127 AVHCHVFVSGY-DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
            +H      GY  S + V   LVN Y K   +    KVFDR+ D+  V+WNS I+   + 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG---DIDLGRWVHEFIVGQGLDVNV 242
              ++A+  F  M+   +   S T V V  AC+ LG    + LG+ +H + +  G D   
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKT 231

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
               +L+ MYA+ G V  ++ +F+   + ++++W  MIS +      +EA+  F  M   
Sbjct: 232 FTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLE 291

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV  + VT  +VL AC+H   +  G  + A + +   L+        +VD++     +  
Sbjct: 292 GVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVES 351

Query: 363 AYKFVKDVIGEKPAPAVWTAML 384
             +    ++G +    +W AM+
Sbjct: 352 GRRVFDHILGRR--IELWNAMI 371


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/555 (38%), Positives = 336/555 (60%), Gaps = 7/555 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH H+   GY     ++  L+++    G +  A+ +F  +P  +   + T+I   S +N 
Sbjct: 38  VHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNL 97

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
           +  +L F   M+   + P+ YT+S+V+++C  L  LNL R +H  +   G +SD+ V++A
Sbjct: 98  NHKALDFLILMLREGVRPNMYTYSSVLRACDGL--LNL-RQLHGSILKVGLESDVFVRSA 154

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ Y+K      A  VF+ M    +V WNS+I G+ QN    E + L+  M+      D
Sbjct: 155 LIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVAD 214

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
            +T   VL AC  L  ++LGR VH  ++    D +++L  +L++MY +CG++  A  +F 
Sbjct: 215 QSTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFT 272

Query: 267 -MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
            MM+E +VI+W+ MI+G   +G+  +A++LF  M++ G +PN +T + VL AC+HAGLV 
Sbjct: 273 RMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVN 332

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           +G   F SM++ +G+ PG EH+ C++DL GRAG L+EA K + + +  +P    W  +LG
Sbjct: 333 DGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHE-MNHEPDAVTWRILLG 391

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           AC++HKN DL +  A+ +L ++P + G Y++LSNIYA + + + V  VR  M  +G+KK 
Sbjct: 392 ACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKD 451

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
            G S +EV ++ + F +GD SHP   EI + L +L+ R    GYVP++   + +LE E+ 
Sbjct: 452 PGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQM 511

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
           E SL+YHSEKLA+ FGLM      TI I KNLR+C DCH   K +S   NR I++RD +R
Sbjct: 512 EDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIR 571

Query: 566 FHHFKRGSCSCLDYW 580
           +HHF+ G CSC DYW
Sbjct: 572 YHHFRGGVCSCGDYW 586



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 163/324 (50%), Gaps = 10/324 (3%)

Query: 100 SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV 159
           + +S    T+S +IK C     +   R VH HVF +GY+    +   L+N Y K   +D 
Sbjct: 10  NRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDE 69

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           AR +FD MPD++VV+W +MIS Y  +    +A+    LM   GV P+  T   VL AC  
Sbjct: 70  ARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDG 129

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           L ++   R +H  I+  GL+ +V + ++LI+ Y++ G    A  +F+ M   +++ W ++
Sbjct: 130 LLNL---RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSI 186

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEY 338
           I G+  +  G E + L+ RM+      +  T  +VL AC    L++ G +V    ++ + 
Sbjct: 187 IGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQ 246

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
            L+     +  ++D++ + G L +A      ++ EK   + W+ M+     +      ++
Sbjct: 247 DLIL----NNALLDMYCKCGSLEDANLLFTRMMTEKDVIS-WSTMIAGLAQNGFSADALK 301

Query: 399 VAEHLLSVEPENPGHYVMLSNIYA 422
           + E + S  P+ P +  +L  ++A
Sbjct: 302 LFEAMKSKGPK-PNYITILGVLFA 324



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 150/285 (52%), Gaps = 5/285 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           +P+   Y ++L+A   L  L+Q+H  ++  G      + + L+      G    A  +F 
Sbjct: 114 RPNMYTYSSVLRACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFN 173

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            + + D  ++N++I   ++ +   ++L  Y+RM  ++      T ++V+++C  L++L L
Sbjct: 174 EMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLEL 233

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR-MPDKSVVAWNSMISGYE 183
           GR VH HV    YD DL +  AL++ Y K  +++ A  +F R M +K V++W++MI+G  
Sbjct: 234 GRQVHVHVL--KYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLA 291

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNV 242
           QNGF+ +A+ LF  M+  G  P+  T + VL AC+  G ++ G +  + +    G+D   
Sbjct: 292 QNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGR 351

Query: 243 VLATSLINMYARCGNVSKA-REIFDMMSELNVIAWTAMISGYGMH 286
                +I++  R G + +A + I +M  E + + W  ++    +H
Sbjct: 352 EHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVH 396


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/507 (40%), Positives = 318/507 (62%), Gaps = 3/507 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L+      G+I  AQ++F  IP  D   +N +I   ++     ++L  ++ M+ +N+ 
Sbjct: 161 TALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 220

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P   T   V+ +CA    + LGR VH  +   G+ S+L +  AL++ Y+K   ++ A  +
Sbjct: 221 PDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 280

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F+ +P K V++WN++I GY      KEA+ LF  M   G  P+  T + +L ACA LG I
Sbjct: 281 FEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 340

Query: 224 DLGRWVHEFIVG--QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           D+GRW+H +I    +G+     L TSLI+MYA+CG++  A ++F+ +   ++ +W AMI 
Sbjct: 341 DIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 400

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           G+ MHG    + ++F RMR +G+ P+++TFV +LSAC+H+G++  G  +F SM Q+Y + 
Sbjct: 401 GFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMT 460

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P +EH+ CM+DL G +GL  EA + + + +  +P   +W ++L ACKMH N +LG   A+
Sbjct: 461 PKLEHYGCMIDLLGHSGLFKEAEEMI-NTMEMEPDGVIWCSLLKACKMHGNVELGESFAQ 519

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
           +L+ +EPENPG YV+LSNIYA AGR + V   R ++  KG+KK  G S++E+D   + F 
Sbjct: 520 NLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFI 579

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
           +GDK HP   EIY  L+E+     EAG+VP++   + E+EEE +E +LR+HSEKLA+AFG
Sbjct: 580 IGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFG 639

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           L+ T PG  + IVKNLR+C +CH A K
Sbjct: 640 LISTKPGTKLTIVKNLRVCRNCHEAYK 666



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 124/427 (29%), Positives = 214/427 (50%), Gaps = 39/427 (9%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSL-VCDAGF--ITYAQRIFFCIPSPDSFLFNTL 77
           L+ L+ +HA +I  G   +   L+KL+   +    F  + YA  +F  I  P+  ++NT+
Sbjct: 3   LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62

Query: 78  IIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
              ++ ++    +L  Y  MI   + P++YTF  ++KSCA       G+ +H HV   G 
Sbjct: 63  FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGC 122

Query: 138 DSDLHVQAALVNFYAKSNN-------------------------------VDVARKVFDR 166
           D DL+V  +L++ Y ++                                 ++ A+K+FD 
Sbjct: 123 DLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDE 182

Query: 167 MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
           +P K VV+WN+MISGY + G  KEA+ LF  M    V PD +T V V++ACAQ G I+LG
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 242

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
           R VH +I   G   N+ +  +LI++Y++CG +  A  +F+ +   +VI+W  +I GY   
Sbjct: 243 RQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHM 302

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY-GLLPGVE 345
               EA+ LF  M   G  PN+VT +++L ACAH G +  G  +   + +   G+     
Sbjct: 303 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASS 362

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
               ++D++ + G +  A++    ++ +  + + W AM+    MH   D   ++   +  
Sbjct: 363 LRTSLIDMYAKCGDIEAAHQVFNSILHK--SLSSWNAMIFGFAMHGRADASFDIFSRMRK 420

Query: 406 --VEPEN 410
             +EP++
Sbjct: 421 NGIEPDD 427



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 33/195 (16%)

Query: 33  VAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLL 92
           + G   + S+ T L+ +    G I  A ++F  I       +N +I   +    +  S  
Sbjct: 354 LKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFD 413

Query: 93  FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYA 152
            + RM  + I P + TF  ++ +C+H  +L+LGR    H+F S    D  +   L ++  
Sbjct: 414 IFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR----HIFRS-MTQDYKMTPKLEHY-- 466

Query: 153 KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVC 212
                                    MI     +G  KEA  + N M    + PD      
Sbjct: 467 -----------------------GCMIDLLGHSGLFKEAEEMINTME---MEPDGVIWCS 500

Query: 213 VLAACAQLGDIDLGR 227
           +L AC   G+++LG 
Sbjct: 501 LLKACKMHGNVELGE 515


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/604 (37%), Positives = 335/604 (55%), Gaps = 47/604 (7%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFLFNTLII 79
           + ++Q+HA  +         + ++LL+L  D     + YA+ IF  I       +NT+I 
Sbjct: 30  QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIK 89

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
              +  FS D ++ +  + V    P N+T   VIK CA L ++  G+ +H      G+ S
Sbjct: 90  CYVENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGS 148

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS---------------------- 177
           D+ VQ +LVN Y+K   +D ARKVFD M DK VV WNS                      
Sbjct: 149 DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDF 208

Query: 178 --------------------MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
                               MI+GYE NG   +A+ +F +M   G  P   T V VL+A 
Sbjct: 209 DSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAV 268

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
           + L  +  GRW+H ++   G +++ +L TSLI MYA+CG +  A  +F  + +  V  WT
Sbjct: 269 SGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWT 328

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           A+I G G+HG    A+ LF  M   G++PN + F+ VL+AC HAGLV +G + F  M  E
Sbjct: 329 AIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNE 388

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
           Y + P +EH+ C+VD+  RAG L EA   +++ +   P   +W ++LG  + H   D+G 
Sbjct: 389 YKIEPTLEHYGCLVDILCRAGHLEEAKNTIEN-MPISPNKVIWMSLLGGSRNHGKIDIGE 447

Query: 398 EVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKN 457
             A+ ++ V PE  G Y++LSN+YA +G  ++V  VR +M ++G +K  G S+VE     
Sbjct: 448 YAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTL 507

Query: 458 YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE-EEEREYSLRYHSEKL 516
           + F +GD SHP T EIY  + E+  + +  G+VP++   +  +E E+E+E  L  HSE+L
Sbjct: 508 HEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERL 567

Query: 517 ALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSC 576
           A+AFGL+   PG+ IRI+KNLR+C DCHS  K +S   +REIIVRD  RFHHFK GSCSC
Sbjct: 568 AIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSC 627

Query: 577 LDYW 580
           +DYW
Sbjct: 628 MDYW 631


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/422 (47%), Positives = 286/422 (67%), Gaps = 2/422 (0%)

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           A KVF+ MP+K +VAWNS+I+G+  NG   EA+ L+  M   GV PD  T V +L+ACA+
Sbjct: 60  AYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAE 119

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTA 278
           L  + LGR  H ++V  GL+ N+    +L+++YA+CG +S+AR+IFD M  E NV++WT+
Sbjct: 120 LATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTS 179

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           +I G  ++G+G EA+E F  M   G+ P+ +TFV VL AC+H G+V EG   F  M+++Y
Sbjct: 180 LIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQY 239

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
            ++P +EH+ CMVDL GRAGLL EAY +++D +  +P   +W  +LGAC +H +  LG  
Sbjct: 240 DIVPRIEHYGCMVDLLGRAGLLKEAYDYIQD-MPLQPNAVIWRTLLGACTIHGHLGLGAF 298

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458
               LL +EP++ G YV+LSN+YA   R   V  VR  M+ +G++K  GYS VE+    +
Sbjct: 299 ARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVH 358

Query: 459 LFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLAL 518
            F MGD++HP +  IY+ L E+  + + AGYVP + + + ++EEEE+E +L YHSEK+A+
Sbjct: 359 EFVMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAI 418

Query: 519 AFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLD 578
           AF L+ T PG  IRI+KNLR+C DCH AIK IS    R+I+VRD  RFHHF+ GSCSC D
Sbjct: 419 AFMLINTLPGTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRD 478

Query: 579 YW 580
           YW
Sbjct: 479 YW 480



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 132/270 (48%), Gaps = 11/270 (4%)

Query: 53  AGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAV 112
             +   A ++F  +P  D   +N++I   +      ++L  Y+RM    + P  +T  ++
Sbjct: 54  TAYFESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSL 113

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKS 171
           + +CA L+ L LGR  H ++   G + +LH   AL++ YAK   +  ARK+FD M  +++
Sbjct: 114 LSACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERN 173

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           VV+W S+I G   NGF KEA+  F  M   G+ P   T V VL AC+  G ++ G    E
Sbjct: 174 VVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEG---FE 230

Query: 232 FIVGQGLDVNVVLATS----LINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMH 286
           +        ++V        ++++  R G + +A + I DM  + N + W  ++    +H
Sbjct: 231 YFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIH 290

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
           G+    +  F R R   + P +     +LS
Sbjct: 291 GH--LGLGAFARARLLQLEPKDSGDYVLLS 318


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/533 (40%), Positives = 315/533 (59%), Gaps = 54/533 (10%)

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
           ++ P   +   V+ +CA +     G+AVH     SG   DL V  ALV+ YAK   VD A
Sbjct: 8   DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR--------------------- 199
            KVFDR+ +K VV+WN+M++GY Q G  ++A+GLF  MR                     
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 200 -------------------------------DFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
                                          D  V P+  T  C L ACA+L  + LGR 
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187

Query: 229 VHEFIVGQGLDVNVV-LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
           +H +I+    D   + +A  LI+MYA+ G++  AR +FD + + N ++WT++++GYGMHG
Sbjct: 188 IHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHG 247

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
            G EA+E+F  MR  G++P+ VT + VL AC+H+G++ +G   F SM +E+G++PG EH+
Sbjct: 248 RGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHY 307

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
            CMVDL GRAG LNEA + ++ +  E P+  VW A+L  C++H N +LG   A+ LL + 
Sbjct: 308 ACMVDLLGRAGRLNEAMELIEGMQME-PSSIVWVALLSGCRIHANVELGEHAAKQLLELN 366

Query: 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSH 467
            EN G Y +LSNIYA A R   V  VR++M   G++K  G S V+  +    F + DK+H
Sbjct: 367 SENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTH 426

Query: 468 PNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSP 527
           P + +IY+ L  L  R +  GYVPE+  A+H++++EE+   L  HSEKLALA+G++ ++P
Sbjct: 427 PQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAP 486

Query: 528 GMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           G  IRI KNLR+C DCH+AI +IS+  + EII+RD  RFHHFK+GSCSC  YW
Sbjct: 487 GAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 121/217 (55%), Gaps = 11/217 (5%)

Query: 78  IIRNSKANFSTDSLLFYRRMIVSN--ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
           + R  +   + D+L  +  M   +  + P+ +T S  + +CA L+ L LGR +H ++  +
Sbjct: 136 VFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRN 195

Query: 136 GYDSD-LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
            +DS  L+V   L++ YAKS ++DVAR VFD +  K+ V+W S+++GY  +G  KEA+ +
Sbjct: 196 HFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEV 255

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS----LIN 250
           F+ MR  G+ PD  T + VL AC+  G ID G    EF      +  V+        +++
Sbjct: 256 FDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGI---EFFNSMSKEFGVIPGQEHYACMVD 312

Query: 251 MYARCGNVSKAREIFD-MMSELNVIAWTAMISGYGMH 286
           +  R G +++A E+ + M  E + I W A++SG  +H
Sbjct: 313 LLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIH 349



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 19/243 (7%)

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
           D  + PD  + V VL ACA +G    G+ VH   V  G   ++ +  +L++MYA+CG V 
Sbjct: 6   DIDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVD 65

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           +A ++FD + E +V++W AM++GY   G   +A+ LF +MR   +  N V++ AV++A A
Sbjct: 66  EASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFA 125

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
             GL  E   VF  M+       G  +    ++LF        ++ F +D +  KP    
Sbjct: 126 QRGLGCETLDVFREMQH------GEANDA--LELF--------SWMFKQDGL-VKPNCFT 168

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM--LSNIYALAGRMDRVEVVRNIM 437
            +  L AC       LG ++  ++L    ++   YV   L ++YA +G +D    V + +
Sbjct: 169 ISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNL 228

Query: 438 IQK 440
            QK
Sbjct: 229 KQK 231


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/579 (36%), Positives = 336/579 (58%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   + +ILK       L +   +H  +I +G      +   L+++    G   YA +
Sbjct: 188 EPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACK 247

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  IP  D   +  LI       + +  L  + +M+    +P+ YTF ++++SC+ LS 
Sbjct: 248 VFGEIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSD 306

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           ++LG+ VH  +  +  D +  V  ALV+ YAK+  ++ A  +F+R+  + + AW  +++G
Sbjct: 307 VDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAG 366

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q+G  ++A+  F  M+  GV P+  T    L+ C+++  +D GR +H   +  G   +
Sbjct: 367 YAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGD 426

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +A++L++MYA+CG V  A  +FD +   + ++W  +I GY  HG G +A++ F  M  
Sbjct: 427 MFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLD 486

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G  P+ VTF+ VLSAC+H GL++EG + F S+ + YG+ P +EH+ CMVD+ GRAG  +
Sbjct: 487 EGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFH 546

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           E   F+++ +       +W  +LGACKMH N + G   A  L  +EPE   +Y++LSN++
Sbjct: 547 EVESFIEE-MKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMF 605

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A  G  D V  VR +M  +G+KK  G S VEV+ + ++F   D SHP   EI+  L +L 
Sbjct: 606 AAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLH 665

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            +    GY P ++  +H + + E++  L YHSE+LALAF L+ TS   TIRI KNLR+C 
Sbjct: 666 QKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICG 725

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH  +K IS  TN+E++VRD   FHHFK GSCSC ++W
Sbjct: 726 DCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 211/437 (48%), Gaps = 40/437 (9%)

Query: 96  RMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155
           +++V    P+ YTF +++K+CA    LN G+A+H  V  SG + D H+  +LVN YAK  
Sbjct: 181 QLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCG 240

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
           + + A KVF  +P++ VV+W ++I+G+   G+    + +FN M   G NP+  T + +L 
Sbjct: 241 SANYACKVFGEIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILR 299

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           +C+ L D+DLG+ VH  IV   LD N  + T+L++MYA+   +  A  IF+ + + ++ A
Sbjct: 300 SCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFA 359

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           WT +++GY   G G +AV+ F +M+  GV+PN  T  + LS C+    +  G R   SM 
Sbjct: 360 WTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSG-RQLHSMA 418

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH----- 390
            + G    +     +VD++ + G + +A      ++        W  ++     H     
Sbjct: 419 IKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVS--WNTIICGYSQHGQGGK 476

Query: 391 --KNFD--------------LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
             K F+              +GV  A   + +  E   H+  LS IY +   ++    + 
Sbjct: 477 ALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMV 536

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
           +I+ + G K H   S +E                 T+ +  + + ++G C+  G +   E
Sbjct: 537 DILGRAG-KFHEVESFIE-------------EMKLTSNVLIW-ETVLGACKMHGNIEFGE 581

Query: 495 SAMHELEEEEREYSLRY 511
            A  +L E E E    Y
Sbjct: 582 RAAMKLFELEPEIDSNY 598



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 183/365 (50%), Gaps = 8/365 (2%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNT-LIIRNS 82
           L+++   +I  G      + + L+++      +  A+++   +P  D   +N  L   NS
Sbjct: 8   LKKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANS 67

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
                    LFY  M  + I  + + F+++I + A L   + G ++H  V   G++SD+ 
Sbjct: 68  PYPLQEAVQLFYL-MRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDIL 126

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           +  A V  Y K+ +V+   + F  M  +++ + N+++SG+       +   +   +   G
Sbjct: 127 ISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEG 186

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
             P+  T + +L  CA  GD++ G+ +H  ++  G++ +  L  SL+N+YA+CG+ + A 
Sbjct: 187 FEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYAC 246

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           ++F  + E +V++WTA+I+G+   GYG+  + +F++M A G  PN  TF+++L +C+   
Sbjct: 247 KVFGEIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLS 305

Query: 323 LVQEGHRVFASMRQEYGLLPGVEH-HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
            V  G +V A + +    L G +     +VD++ +   L +A      +I  K     WT
Sbjct: 306 DVDLGKQVHAQIVKNS--LDGNDFVGTALVDMYAKNRFLEDAETIFNRLI--KRDLFAWT 361

Query: 382 AMLGA 386
            ++  
Sbjct: 362 VIVAG 366



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 155/335 (46%), Gaps = 19/335 (5%)

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           V  +G   D H+ ++LVN Y K  ++  AR+V + MP + V  WN  +S        +EA
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           + LF LMR   +  +      +++A A LGD   G  +H  +   G + +++++ + + M
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           Y +  +V    + F  M   N+ +   ++SG+       +   +  ++   G  PN  TF
Sbjct: 135 YMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTF 194

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           +++L  CA  G + EG  +   + +  G+ P       +V+++ + G  N A K    V 
Sbjct: 195 ISILKTCASKGDLNEGKAIHGQVIKS-GINPDSHLWNSLVNVYAKCGSANYACK----VF 249

Query: 372 GEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA----- 424
           GE P   V  WTA++    + + +  G+ +   +L+ E  NP  Y  +S + + +     
Sbjct: 250 GEIPERDVVSWTALITGF-VAEGYGSGLRIFNQMLA-EGFNPNMYTFISILRSCSSLSDV 307

Query: 425 --GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKN 457
             G+    ++V+N +        VG + V++  KN
Sbjct: 308 DLGKQVHAQIVKNSLDGNDF---VGTALVDMYAKN 339


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/560 (36%), Positives = 327/560 (58%), Gaps = 40/560 (7%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+ +F  +      ++N +I    ++    D+   +RRM+   +    +TF++V+
Sbjct: 246 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 305

Query: 114 KSCAHLSILNLGRAVHCHV------FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
            +CA+      G++VH  +      FV   ++ L V  ALV  Y+K   + +A+++FD M
Sbjct: 306 SACANAGFFVHGKSVHGQIIRLQPNFVP--EAALPVNNALVTLYSKGGKIVIAKRIFDTM 363

Query: 168 PDKSVVAWNS-------------------------------MISGYEQNGFAKEAIGLFN 196
             K VV+WN+                               M+SGY   G +++A+ LFN
Sbjct: 364 NLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFN 423

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            MR   V P   T    +AAC +LG +  GR +H  +V  G + +     +L+ MYA+CG
Sbjct: 424 QMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCG 483

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
            V+ AR +F +M  L+ ++W AMIS  G HG+G EA+ELF +M A G+ P+ ++F+ +L+
Sbjct: 484 AVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILT 543

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC HAGLV EG   F SM++++G+ PG +H+  ++DL GR+G + EA   +K +  E P 
Sbjct: 544 ACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFE-PT 602

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
           P++W A+L  C+ + + + G   A+ L  + P++ G Y++LSN Y+ AGR      VR +
Sbjct: 603 PSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKL 662

Query: 437 MIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESA 496
           M  +G+KK  G S +EV  K ++F +GD  HP   E+YQ+L+ +  R R+ GYVP+++  
Sbjct: 663 MRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFV 722

Query: 497 MHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNR 556
           +H++E  E+EY L  HSEKLA+ FGL++  PG T+ ++KNLR+C DCH+A+ F+S A  R
Sbjct: 723 LHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGR 782

Query: 557 EIIVRDRLRFHHFKRGSCSC 576
           EI+VRD  RFHHFK G CSC
Sbjct: 783 EIVVRDVRRFHHFKDGECSC 802



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 200/457 (43%), Gaps = 79/457 (17%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP--DSFLFNTLIIRNSKANFSTDSLLFYR 95
           R+ S  T L++    AG +  A   F  +P    D+ L N ++   ++A+ +  ++  + 
Sbjct: 90  RAPSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFH 149

Query: 96  RMIVS-NISPSNYTFSAVIKSCAHLSILNLGRA--VHCHVFVSGYDSDLHVQAALVNFYA 152
            ++ S ++ P +Y+F+A+I +   +  L       +HC V  SG  + L V  AL+  Y 
Sbjct: 150 ALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYM 209

Query: 153 KSNNVDV---ARKVFDRMPDKSV-------------------------------VAWNSM 178
           K +  +    ARKV D MPDK                                 V WN+M
Sbjct: 210 KCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAM 269

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH-------- 230
           ISGY Q+G   +A  LF  M    V  D  T   VL+ACA  G    G+ VH        
Sbjct: 270 ISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQP 329

Query: 231 EFIVGQGLDVNVVLAT---------------------------SLINMYARCGNVSKARE 263
            F+    L VN  L T                           ++++ Y   G + KA E
Sbjct: 330 NFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVE 389

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +F +M   N ++W  M+SGY   G   +A++LF++MRA  V+P + T+   ++AC   G 
Sbjct: 390 VFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGA 449

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           ++ G ++ A + Q  G          ++ ++ + G +N+A + V  V+    + + W AM
Sbjct: 450 LKHGRQLHAHLVQ-CGFEASNSAGNALLTMYAKCGAVNDA-RLVFLVMPNLDSVS-WNAM 506

Query: 384 LGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLS 418
           + A   H +    +E+ + +++  ++P+      +L+
Sbjct: 507 ISALGQHGHGREALELFDQMVAEGIDPDRISFLTILT 543



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 144/300 (48%), Gaps = 17/300 (5%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           +LS   D+G +  A  +F  +P  +   +  ++        S D+L  + +M   ++ P 
Sbjct: 374 ILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPC 433

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           +YT++  I +C  L  L  GR +H H+   G+++      AL+  YAK   V+ AR VF 
Sbjct: 434 DYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFL 493

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP+   V+WN+MIS   Q+G  +EA+ LF+ M   G++PD  + + +L AC   G +D 
Sbjct: 494 VMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDE 553

Query: 226 G-----RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAM 279
           G         +F +  G D        LI++  R G + +AR++   M  E     W A+
Sbjct: 554 GFHYFESMKRDFGISPGED----HYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAI 609

Query: 280 ISGYGMHG---YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           +SG   +G   +G  A +   RM    +  ++ T++ + +  + AG   +  RV   MR 
Sbjct: 610 LSGCRTNGDMEFGAYAADQLFRM----IPQHDGTYILLSNTYSAAGRWVDAARVRKLMRD 665



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 10/172 (5%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  +Q+HAHL+  G+  S S    LL++    G +  A+ +F  +P+ DS  +N +I  
Sbjct: 450 LKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISA 509

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS----- 135
             +     ++L  + +M+   I P   +F  ++ +C H  +++ G     H F S     
Sbjct: 510 LGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEG----FHYFESMKRDF 565

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMISGYEQNG 186
           G        A L++   +S  +  AR +   MP + +   W +++SG   NG
Sbjct: 566 GISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNG 617


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/512 (41%), Positives = 305/512 (59%), Gaps = 42/512 (8%)

Query: 107 YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD- 165
           +TF  V+KS   L  + +G+ VH  +   G   DL+V  +L+  Y K   ++ A KVFD 
Sbjct: 135 FTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDN 194

Query: 166 ------------------------------RMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
                                         RMP +++V+W +MISGY Q+G A++A+ LF
Sbjct: 195 MTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLF 254

Query: 196 NLM--RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           + M   D GV P+  T + VL ACAQL  ++ GR +HE     GL+ N  +  +L  MYA
Sbjct: 255 DEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYA 314

Query: 254 RCGNVSKAREIFDMMS--ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           +CG++  AR  FD ++  E N+IAW  MI+ Y  +G+G +AV  F  M   G++P+++TF
Sbjct: 315 KCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITF 374

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
             +LS C+H+GLV  G + F  M   Y + P VEH+ C+ DL GRAG L EA K V    
Sbjct: 375 TGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLV---- 430

Query: 372 GEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
           GE P PA   +W ++L AC+ H+N ++    A  L  +EPEN G+YV+LSN+YA AGR  
Sbjct: 431 GEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQ 490

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
            V+ +R I+  +G KK  G S +E++ K ++F  GD SHP   EIY +L+ L  + + AG
Sbjct: 491 EVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAG 550

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           Y P++   +H++ EEE+E++L  HSEKLA+AFG++ T     +R+ KNLR+C DCH+A+ 
Sbjct: 551 YFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMV 610

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           FIS    RE+IVRD  RFHHFK G CSC DYW
Sbjct: 611 FISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 144/307 (46%), Gaps = 9/307 (2%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           R  S    LL+    +G I  A  IF  +P  +   + T+I   S++  +  +L  +  M
Sbjct: 198 RDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEM 257

Query: 98  IV--SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155
           +   S + P+  T  +V+ +CA LS L  GR +H      G +S+  V  AL   YAK  
Sbjct: 258 VKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCG 317

Query: 156 NVDVARKVFDRM--PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
           ++  AR  FD++   +K+++AWN+MI+ Y   G   +A+  F  M   G+ PD  T   +
Sbjct: 318 SLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGL 377

Query: 214 LAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF-DMMSEL 271
           L+ C+  G +D+G ++ +       ++  V     + ++  R G +++A ++  +M    
Sbjct: 378 LSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPA 437

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGHRV 330
               W ++++    H    E  E   R +   + P N   +V + +  A AG  QE  ++
Sbjct: 438 GPSIWGSLLAACRKH-RNLEMAETAAR-KLFVLEPENTGNYVLLSNMYAEAGRWQEVDKL 495

Query: 331 FASMRQE 337
            A ++ +
Sbjct: 496 RAIVKSQ 502


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/578 (35%), Positives = 341/578 (58%), Gaps = 5/578 (0%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    Y +I+ A  + K L   + +HAHL  +       +L  L+ + C  G ++ A+ +
Sbjct: 58  PTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHV 117

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +PS D   +  LI   ++     +++     M+ +   P+ +TF++++K+       
Sbjct: 118 FDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGC 177

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           ++G  +H       +D D++V +AL++ YA+   +D+A  VFDR+  K+ V+WN++I+G+
Sbjct: 178 SIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGF 237

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            +    +  +  F  M+  G      T   + +A A++G ++ GRWVH  ++  G  +  
Sbjct: 238 ARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTA 297

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +  +++ MYA+ G++  AR++FD M + +++ W  M++    +G G EAV  F  +R  
Sbjct: 298 FVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKC 357

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G++ N +TF++VL+AC+H GLV+EG   F  M ++Y + P ++H+V  VDL GRAGLL E
Sbjct: 358 GIQLNQITFLSVLTACSHGGLVKEGKHYF-DMMKDYNVQPEIDHYVSFVDLLGRAGLLKE 416

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A  FV  +  E P  AVW A+LGAC+MHKN  +G   A+H+  ++P++ G  V+L NIYA
Sbjct: 417 ALIFVFKMPME-PTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYA 475

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             G+ +    VR +M   G+KK    S V+++   ++F   D +HP + +IY+  +E+  
Sbjct: 476 STGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINM 535

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           R ++AGYVP +   +  + E+ERE  L+YHSEK+ALAF L+    G +IRI+KN+R+C D
Sbjct: 536 RIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGD 595

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CHSA K++S    REI+VRD  RFHHF  GSCSC DYW
Sbjct: 596 CHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 145/302 (48%), Gaps = 6/302 (1%)

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           ++P+   + ++I +CA    L   RA+H H+  S    D  +  +L++ Y K   V  AR
Sbjct: 56  LAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDAR 115

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
            VFD+MP + VV+W  +I+GY QN    EAIGL   M      P+  T   +L A    G
Sbjct: 116 HVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACG 175

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
              +G  +H   V    D +V + ++L++MYARC  +  A  +FD +   N ++W A+I+
Sbjct: 176 GCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIA 235

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           G+     G   +  F  M+ +G    + T+ ++ SA A  G +++G  V A + +    L
Sbjct: 236 GFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKL 295

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
                +  M+ ++ ++G + +A K    +  +K     W  ML A      + LG E   
Sbjct: 296 TAFVGNT-MLGMYAKSGSMVDARKVFDRM--DKRDLVTWNTMLTAL---AQYGLGKEAVA 349

Query: 402 HL 403
           H 
Sbjct: 350 HF 351


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/555 (38%), Positives = 331/555 (59%), Gaps = 1/555 (0%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           Q H + + +G    + +   L+ +      +  A  +++ +P  D F +N +I    +  
Sbjct: 150 QCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENG 209

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
           + +++L    RM+   I   N T+      C+HL  L LG  VHC +F +G + D  V +
Sbjct: 210 YPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSS 269

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           A+++ Y K  N+  ARKVF+R+  K+VV+W ++++ Y QNG  +EA+  F  M   G+ P
Sbjct: 270 AIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLP 329

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           +  T   +L +CA +  +  G+ +H  I   G + ++++  +LINMY++ G++  A ++F
Sbjct: 330 NEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVF 389

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
             M   + I W+AMI G   HG G EA+ +F  M A    P+ VTFV VLSACAH G VQ
Sbjct: 390 LEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQ 449

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           EG      + ++ G+ PGVEH+ C+V L  +AG L+EA  F+K    +    A W  +L 
Sbjct: 450 EGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVA-WRTLLS 508

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           AC +H+N+ LG +VAE +L ++P + G Y++LSN+YA A R D V  +R +M ++ +KK 
Sbjct: 509 ACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKE 568

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
            G S +E+    ++F    K+HP +N+IY+ + EL+   R  GYVP+  +  H++E+E++
Sbjct: 569 PGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQK 628

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
              + YHSEKLA+A+GLM+T  G  IR++KNLRMCVDCHSA+K IS  TNR IIVRD  R
Sbjct: 629 REYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANR 688

Query: 566 FHHFKRGSCSCLDYW 580
           FH F  G CSC DYW
Sbjct: 689 FHCFGDGGCSCADYW 703



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 214/441 (48%), Gaps = 20/441 (4%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSML--TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           LK  + +HAHLI+       +++    L++L      I  A+ +F  +   +   +  L+
Sbjct: 41  LKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALM 100

Query: 79  IRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
                     + L  ++ MI V  + P+ Y F+ +I SC+    +  G   H +   SG 
Sbjct: 101 AGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGL 160

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
               +V+ AL+  Y++ ++V  A  V+  +P   V ++N +I+G  +NG+  EA+ + + 
Sbjct: 161 VFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDR 220

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M D  +  D+ T V     C+ L D+ LG  VH  +   G + +  +++++I+MY +CGN
Sbjct: 221 MVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGN 280

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           +  AR++F+ +   NV++WTA+++ Y  +G   EA+  F  M   G+ PN  TF  +L++
Sbjct: 281 ILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNS 340

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGE 373
           CA    +  G  +   +++      G E H+     +++++ ++G +  A+K   ++I  
Sbjct: 341 CAGISALGHGKLLHTRIKKS-----GFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICR 395

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE-- 431
                 W+AM+     H      + V + +L+ + E P HYV    + +    +  V+  
Sbjct: 396 D--SITWSAMICGLSHHGLGREALVVFQEMLAAK-ECP-HYVTFVGVLSACAHLGSVQEG 451

Query: 432 --VVRNIMIQKGLKKHVGYST 450
              +  +M Q G++  V + T
Sbjct: 452 FYYLNQLMKQTGIEPGVEHYT 472


>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Glycine max]
          Length = 626

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/555 (38%), Positives = 344/555 (61%), Gaps = 2/555 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +HA +I +   R   +  +L+S   + G    AQ++F  +P  DS  +N+L+   S+   
Sbjct: 73  IHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRIGD 132

Query: 87  STDSL-LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
             + L +FY          +  T  +VI +CA     + G  +HC     G + ++ V  
Sbjct: 133 LGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEVKVVN 192

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           A +N Y K   VD A K+F  +P++++V+WNSM++ + QNG   EA+  FN+MR  G+ P
Sbjct: 193 AFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGLFP 252

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           D  T + +L AC +L    L   +H  I   GL+ N+ +AT+L+N+Y++ G ++ + ++F
Sbjct: 253 DEATILSLLQACEKLPLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHKVF 312

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
             +S+ + +A TAM++GY MHG+G EA+E F      G++P++VTF  +LSAC+H+GLV 
Sbjct: 313 AEISKPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACSHSGLVM 372

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           +G   F  M   Y + P ++H+ CMVDL GR G+LN+AY+ +K +  E P   VW A+LG
Sbjct: 373 DGKYYFQIMSDFYRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKSMPLE-PNSGVWGALLG 431

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           AC++++N +LG E AE+L+++ P +P +Y+MLSNIY+ AG       VR +M  K   ++
Sbjct: 432 ACRVYRNINLGKEAAENLIALNPSDPRNYIMLSNIYSAAGLWSDASKVRALMKTKVFIRN 491

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
            G S +E   K + F + D SHP++++I++ L+E+M + +E G+V E+ES +H+++EE +
Sbjct: 492 AGCSFIEHGNKIHRFVVDDYSHPDSDKIHRKLEEIMRKIKEVGFVSETESILHDVDEEVK 551

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
              +  HSEK+ALAFGL+ ++  M + I+KNLR+C+DCH+  KF+S+   R II+RD  R
Sbjct: 552 TDMINKHSEKIALAFGLLVSNADMPLVIIKNLRICLDCHNTAKFVSLIEKRTIIIRDSKR 611

Query: 566 FHHFKRGSCSCLDYW 580
           FHHF  G CSC DYW
Sbjct: 612 FHHFSDGLCSCADYW 626



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 166/365 (45%), Gaps = 37/365 (10%)

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           R +H  V  S    D  +   LV+ Y    +   A+K+FD MP K  ++WNS++SG+ + 
Sbjct: 71  RVIHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRI 130

Query: 186 GFAKEAIGLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           G     + +F  MR +     +  T + V++ACA     D G  +H   V  G+++ V +
Sbjct: 131 GDLGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEVKV 190

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             + INMY + G V  A ++F  + E N+++W +M++ +  +G   EAV  F+ MR +G+
Sbjct: 191 VNAFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGL 250

Query: 305 RPNNVTFVAVLSACAH---AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            P+  T +++L AC       LV+  H V  +     GL   +     +++L+ + G LN
Sbjct: 251 FPDEATILSLLQACEKLPLGRLVEAIHGVIFTC----GLNENITIATTLLNLYSKLGRLN 306

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
            ++K   ++   KP     TAML    MH +    +E  +  +  E   P H      + 
Sbjct: 307 VSHKVFAEI--SKPDKVALTAMLAGYAMHGHGKEAIEFFKWTVR-EGMKPDHVTFTHLLS 363

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD--KSHPNTNEIYQYLDE 479
           A +                       +S + +D K Y   M D  +  P  +  Y  + +
Sbjct: 364 ACS-----------------------HSGLVMDGKYYFQIMSDFYRVQPQLDH-YSCMVD 399

Query: 480 LMGRC 484
           L+GRC
Sbjct: 400 LLGRC 404


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/556 (37%), Positives = 328/556 (58%), Gaps = 1/556 (0%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            +Q+H H +  G      + T L+ +   +G +  A+ +F      D   +N ++      
Sbjct: 1026 RQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIG 1085

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            N    +L  +  +  S       T +   K+C  L +L+ G+ +H H   +G+DSDLHV 
Sbjct: 1086 NDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVN 1145

Query: 145  AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            + +++ Y K  ++  A  VF+ +     VAW SMISG   NG   +A+ +++ MR   V 
Sbjct: 1146 SGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVM 1205

Query: 205  PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            PD  T   ++ A + +  ++ GR +H  ++      +  + TSL++MYA+CGN+  A  +
Sbjct: 1206 PDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRL 1265

Query: 265  FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
            F  M+  N+  W AM+ G   HG   EAV LF  M++HG+ P+ V+F+ +LSAC+HAGL 
Sbjct: 1266 FKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLT 1325

Query: 325  QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
             E +    SM  +YG+ P +EH+ C+VD  GRAGL+ EA K + + +  K + ++  A+L
Sbjct: 1326 SEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVI-ETMPFKASASINRALL 1384

Query: 385  GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            GAC++  + + G  VA  L ++EP +   YV+LSNIYA A R D V   R +M +K +KK
Sbjct: 1385 GACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKK 1444

Query: 445  HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
              G+S ++V    +LF + D+SHP  + IY  ++E+M   RE GYVP++E  + ++E+EE
Sbjct: 1445 DPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEE 1504

Query: 505  REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
            +E SL YHSEKLA+A+GL+ T    TIR++KNLR+C DCH+AIK+IS    REI++RD  
Sbjct: 1505 KERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDAN 1564

Query: 565  RFHHFKRGSCSCLDYW 580
            RFHHF+ G CSC DYW
Sbjct: 1565 RFHHFRDGVCSCGDYW 1580



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 202/389 (51%), Gaps = 8/389 (2%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            +QVH   + +G     S+   L+++    G   +A+ +F  +   D   +N++I   +++
Sbjct: 924  KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 983

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL-SILNLGRAVHCHVFVSGYDSDLHV 143
            +   +S+  +  ++   + P ++T ++V+++C+ L   LN+ R +H H   +G  +D  V
Sbjct: 984  SLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFV 1043

Query: 144  QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
               L++ Y+KS  ++ A  +F    D  +  WN+M+ GY      K+A+ LF+L+   G 
Sbjct: 1044 ATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGE 1103

Query: 204  NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
              D  T      AC  L  +D G+ +H   +  G D ++ + + +++MY +CG++  A  
Sbjct: 1104 KSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGI 1163

Query: 264  IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
            +F+ +S  + +AWT+MISG   +G   +A+ ++HRMR   V P+  TF  ++ A +    
Sbjct: 1164 VFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTA 1223

Query: 324  VQEGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
            +++G ++ A+ ++ +    P V     +VD++ + G + +AY+  K +       A+W A
Sbjct: 1224 LEQGRQLHANVIKLDCVSDPFV--GTSLVDMYAKCGNIEDAYRLFKKM--NVRNIALWNA 1279

Query: 383  MLGACKMHKNFDLGVEVAEHLLS--VEPE 409
            ML     H N +  V + + + S  +EP+
Sbjct: 1280 MLVGLAQHGNAEEAVNLFKSMKSHGIEPD 1308



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 4/343 (1%)

Query: 58   YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            YA ++     +PD F +N  +     A  +  ++  +  M   NI     T   V+ + A
Sbjct: 856  YAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVA 915

Query: 118  HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
                L LG+ VH     SG DSD+ V  +LVN Y+K      AR+VF+ M    +++WNS
Sbjct: 916  GTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNS 975

Query: 178  MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD-IDLGRWVHEFIVGQ 236
            MIS   Q+   +E++ LF  +   G+ PD  T   VL AC+ L D +++ R +H   +  
Sbjct: 976  MISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKT 1035

Query: 237  GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
            G   +  +AT+LI++Y++ G + +A  +F    +L++  W AM+ GY +   G +A+ELF
Sbjct: 1036 GNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELF 1095

Query: 297  HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
              +   G + + +T      AC    L+ +G ++ A   +  G    +  +  ++D++ +
Sbjct: 1096 SLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKA-GFDSDLHVNSGILDMYIK 1154

Query: 357  AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
             G +  A   V + I   P    WT+M+  C  + N D  + +
Sbjct: 1155 CGDMVNA-GIVFNYI-SAPDDVAWTSMISGCVDNGNEDQALRI 1195



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 5/203 (2%)

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L LG+  H  + VSG   D  +   L+  Y+K  ++  AR+VFD  P++ +V WN+++  
Sbjct: 637 LLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGA 696

Query: 182 Y-----EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
           Y       +G A+E + LF L+R    +    T   VL  C   G +     VH + +  
Sbjct: 697 YAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKI 756

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
           GL+ +V ++ +L+N+Y++CG +  AR +FD M E +V+ W  M+ GY   G   EA +LF
Sbjct: 757 GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLF 816

Query: 297 HRMRAHGVRPNNVTFVAVLSACA 319
                 G+RP+  +   +L+  +
Sbjct: 817 SEFHRSGLRPDEFSVQLILNGVS 839



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 181/419 (43%), Gaps = 38/419 (9%)

Query: 27   VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR-----N 81
             HA ++V+G      +   LL++    G ++ A+++F   P  D   +N ++       +
Sbjct: 643  THARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVD 702

Query: 82   SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
            S    + + L  +R +  S  S +  T + V+K C +   L     VH +    G + D+
Sbjct: 703  SNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDV 762

Query: 142  HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
             V  ALVN Y+K   +  AR +FD M ++ VV WN M+ GY Q G  KEA  LF+     
Sbjct: 763  FVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRS 822

Query: 202  GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
            G+ PD  +   +L   +++ + D G+W+ +                 +  YA   ++S  
Sbjct: 823  GLRPDEFSVQLILNGVSEV-NWDEGKWLAD----------------QVQAYAAKLSLSDD 865

Query: 262  REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
                      +V  W   +S     G    A+E F  M    +  + VT + VL+A A  
Sbjct: 866  NP--------DVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGT 917

Query: 322  GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV-- 379
              ++ G +V   +  + GL   V     +V+++ + G    AY F ++V  +     +  
Sbjct: 918  DDLELGKQVHG-IAVKSGLDSDVSVANSLVNMYSKMGC---AY-FAREVFNDMKHLDLIS 972

Query: 380  WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
            W +M+ +C      +  V +   LL  E   P H+ + S + A +  +D + + R I +
Sbjct: 973  WNSMISSCAQSSLEEESVNLFIDLLH-EGLKPDHFTLASVLRACSSLIDGLNISRQIHV 1030


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/551 (39%), Positives = 325/551 (58%), Gaps = 24/551 (4%)

Query: 53  AGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA- 111
           AG +  A  +F  IP PDS  +N +++   ++     +L F+ +M V +I+  N   S  
Sbjct: 118 AGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGF 177

Query: 112 -----VIKSCAHLSILNLGRAVHCHVFVSGY--DSDLH---------------VQAALVN 149
                + K+    S++     V     +SGY    DL                V+ A++ 
Sbjct: 178 AQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLT 237

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            Y K   V++A ++F RM  K++V WNSMI+GY +N  A++ + +F  M +  V P+  +
Sbjct: 238 GYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLS 297

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
              VL  C+ L  + LGR +H+ +    L  +    TSLI+MY +CG++  A ++F  M 
Sbjct: 298 LSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP 357

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             +VI W AMISGY  HG G +A+ LF +MR   ++P+ +TFVAV+ AC HAG V  G +
Sbjct: 358 RKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQ 417

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
            F SM++E+G+     H+ C++DL GRAG L+EA   +K+ +   P  A++  +LGAC++
Sbjct: 418 YFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKE-MPFTPHAAIYGTLLGACRI 476

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           HKN DL    A +LL+++P +   YV L+NIYA   + D+V  VR +M +  + K  GYS
Sbjct: 477 HKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYS 536

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
            +E+    + F   D+ HP    I++ L+EL G+ + AGYVP+ E A+H++EEE +E  L
Sbjct: 537 WIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLL 596

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
            +HSEKLA+AFGLM+T+PG  IR+ KNLR+C DCH AIKFIS    REIIVRD  RFHHF
Sbjct: 597 LWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHF 656

Query: 570 KRGSCSCLDYW 580
           + G CSC DYW
Sbjct: 657 RNGFCSCGDYW 667



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 122/229 (53%), Gaps = 7/229 (3%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVS 100
           T +L+     G +  A+RIF  +   +   +N++I   + N +A    D L  ++ MI S
Sbjct: 233 TAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAE---DGLKVFKTMIES 289

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
            + P+  + S+V+  C++LS L LGR +H  V  S    D     +L++ Y K  ++D A
Sbjct: 290 RVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSA 349

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
            K+F  MP K V+ WN+MISGY Q+G  ++A+ LF+ MR+  + PD  T V V+ AC   
Sbjct: 350 WKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHA 409

Query: 221 GDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           G +DLG ++        G++   V  T +I++  R G + +A  +   M
Sbjct: 410 GFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 39/198 (19%)

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ-NGFAKEAIGLFNLMRDFGVNPDSTT 209
           + ++ +++ AR VF++M  ++ V WN+M+SGY +  G  KEA  LF+ + +    PDS +
Sbjct: 83  FVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPE----PDSVS 138

Query: 210 ----CVCVL------AACAQLGDI---DLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
                VC L      AA A    +   D+  W                  +LI+ +A+ G
Sbjct: 139 YNIMLVCYLRSYGVKAALAFFNKMPVKDIASW-----------------NTLISGFAQNG 181

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
            + KA ++F +M E N ++W+AMISGY  HG    A EL+  +    V    V   A+L+
Sbjct: 182 QMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSV----VVETAMLT 237

Query: 317 ACAHAGLVQEGHRVFASM 334
                G V+   R+F  M
Sbjct: 238 GYMKFGKVELAERIFQRM 255



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 105/265 (39%), Gaps = 45/265 (16%)

Query: 23  PL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           PL +Q+H  +  +   +  +  T L+S+ C  G +  A ++F  +P  D   +N +I   
Sbjct: 312 PLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGY 371

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           ++      +L  + +M    + P   TF AVI +C H   ++LG       +      + 
Sbjct: 372 AQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQ-----YFKSMKKEF 426

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            ++A  V++                           +I    + G   EA+   +L+++ 
Sbjct: 427 GIEAKPVHY-------------------------TCVIDLLGRAGRLDEAV---SLIKEM 458

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT---SLINMYARCGNV 258
              P +     +L AC    ++DL     EF     L+++   AT    L N+YA     
Sbjct: 459 PFTPHAAIYGTLLGACRIHKNLDLA----EFAARNLLNLDPTSATGYVQLANIYAATNKW 514

Query: 259 SKAREIFDMMSELNVIAWTAMISGY 283
            +  ++  MM E NV+     I GY
Sbjct: 515 DQVAKVRKMMKEHNVVK----IPGY 535


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/527 (38%), Positives = 319/527 (60%), Gaps = 1/527 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+++F  I       +N LI  +++      +L    +M  S   P  +T S+++
Sbjct: 399 GALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLL 458

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
            +CAHL  L  G+ +H +V  +G ++D  V  +L++ Y        AR +FDRM DK++V
Sbjct: 459 LACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLV 518

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           +WN+MISGY QNG   E++ LF      G+       V V  AC+QL  + LG+  H ++
Sbjct: 519 SWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYV 578

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +      +  +  S+I+MYA+ G + ++R++FD + + NV +W A+I  +G+HG+G EA+
Sbjct: 579 LKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAI 638

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           EL+ RM+  G  P+  T++ +L AC HAGLV+EG + F  M+    + P +EH+ C++D+
Sbjct: 639 ELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDM 698

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
             RAG L++A + V + + E+    +W+++L +C+     ++G +VA+ LL +EP+   +
Sbjct: 699 LARAGRLDDALRLVNE-MPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAEN 757

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+LSN+YA  G+ D V  VR +M + GL+K  G S +EV  + Y F +GD   P + EI
Sbjct: 758 YVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEI 817

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
                 L  R  E GY P + S +HE+ EEE+   LR HSEKLA++FGL++T+ G T+RI
Sbjct: 818 RVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLRI 877

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCH+A K IS A  REI+VRD  RFHHF+ G CSC DYW
Sbjct: 878 YKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 181/352 (51%), Gaps = 18/352 (5%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV-SNI 102
           T+L+ +    G    ++ +F  + + +   +N L+   ++     D +  +  ++  ++ 
Sbjct: 83  TRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDF 142

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
            P N+TF +VIK+C  +  + LG  +H  V   G   D+ V  ALV  Y K   VD A K
Sbjct: 143 QPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMK 202

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLG 221
           VFD MP+ ++V+WNSMI  + +NGF++++  L   ++ + G+ PD  T V +L  CA  G
Sbjct: 203 VFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEG 262

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           ++D+G  +H   V  GL   V++  +++ MY++CG +++A+  F   +  NV++W  MIS
Sbjct: 263 EVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMIS 322

Query: 282 GYGMHGYGTEAVELFHRMRAHG--VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
            + + G   EA  L   M+  G  ++ N VT + VL AC     ++       S+++ +G
Sbjct: 323 AFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLR-------SLKELHG 375

Query: 340 L-----LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
                    VE     +  + + G LN A K V   IG+K   + W A++G 
Sbjct: 376 YSFRHCFQHVELSNAFILAYAKCGALNSAEK-VFHGIGDKTVSS-WNALIGG 425



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 173/342 (50%), Gaps = 17/342 (4%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSG-YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
           ++++C +   +  GR +H  V  S  Y +D  +   L+  YA   +   +R VFD M  K
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           +++ WN+++SGY +NG   + + +F +L+ D    PD+ T   V+ AC  + D+ LG  +
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVI 168

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           H  ++  GL ++V +  +L+ MY +CG V +A ++FD M E N+++W +MI  +  +G+ 
Sbjct: 169 HGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFS 228

Query: 290 TEAVELFHRMRA-HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
            ++ +L   M    G+ P+ VT V +L  CA  G V  G  +   +  + GL   V  + 
Sbjct: 229 RDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHG-LAVKLGLSEEVMVNN 287

Query: 349 CMVDLFGRAGLLNEA-YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
            MV ++ + G LNEA   FVK+          W  M+ A  +  + +    + + +    
Sbjct: 288 AMVYMYSKCGYLNEAQMSFVKN---NNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQG 344

Query: 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
            E   + V + N+  L   +D++++       + LK+  GYS
Sbjct: 345 EEMKANEVTILNV--LPACLDKLQL-------RSLKELHGYS 377



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 176/358 (49%), Gaps = 12/358 (3%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS--NISPSNYTFSA 111
           G++  AQ  F    + +   +NT+I   S      ++    + M +    +  +  T   
Sbjct: 297 GYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILN 356

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           V+ +C     L   + +H + F   +   + +  A +  YAK   ++ A KVF  + DK+
Sbjct: 357 VLPACLDKLQLRSLKELHGYSFRHCFQH-VELSNAFILAYAKCGALNSAEKVFHGIGDKT 415

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           V +WN++I G+ QNG  ++A+ L   M   G  PD  T   +L ACA L  +  G+ +H 
Sbjct: 416 VSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHG 475

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
           +++  GL+ +  + TSL++ Y  CG  S AR +FD M + N+++W AMISGY  +G   E
Sbjct: 476 YVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYE 535

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAG---LVQEGHRVFASMRQEYGLLPGVEHHV 348
           ++ LF +  + G++ + +  V+V  AC+      L +E H       Q      G     
Sbjct: 536 SLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCS--- 592

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406
            ++D++ ++G + E+ K V D + +K   A W A++ A  +H +    +E+ E +  V
Sbjct: 593 -IIDMYAKSGCIKESRK-VFDGLKDKNV-ASWNAIIVAHGIHGHGKEAIELYERMKKV 647



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 165/345 (47%), Gaps = 13/345 (3%)

Query: 4   KQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           +QP      ++L A   LK LQ   ++H +++  G      + T LLS     G  + A+
Sbjct: 447 QQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSAR 506

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
            +F  +   +   +N +I   S+     +SL  +R+ +   I        +V  +C+ LS
Sbjct: 507 VLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLS 566

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L LG+  H +V  +    D  V  ++++ YAKS  +  +RKVFD + DK+V +WN++I 
Sbjct: 567 ALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIV 626

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLD 239
            +  +G  KEAI L+  M+  G  PD  T + +L AC   G ++ G ++  E      ++
Sbjct: 627 AHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIE 686

Query: 240 VNVVLATSLINMYARCGNVSKA-REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             +     LI+M AR G +  A R + +M  E +   W++++      G    A+E+  +
Sbjct: 687 PKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFG----ALEIGEK 742

Query: 299 M--RAHGVRPNNVTFVAVLSACAHAGLVQ-EGHRVFASMRQEYGL 340
           +  +   + P+      +LS   +AGL + +G R    M +E GL
Sbjct: 743 VAKKLLELEPDKAENYVLLSNL-YAGLGKWDGVRRVRQMMKEIGL 786



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 109/220 (49%), Gaps = 31/220 (14%)

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN-VVLAT 246
           AKEAIGL                  +L AC    DI+ GR +H+F+       N  VL T
Sbjct: 42  AKEAIGL------------------LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNT 83

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVR 305
            LI MYA CG+   +R +FD M   N+I W A++SGY  +G   + V++F  + +    +
Sbjct: 84  RLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQ 143

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           P+N TF +V+ AC     V+ G  V   M  + GL+  V     +V ++G+ G ++EA K
Sbjct: 144 PDNFTFPSVIKACGGILDVRLG-EVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMK 202

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKN------FDLGVEV 399
            V D + E    + W +M+  C   +N      FDL +E+
Sbjct: 203 -VFDFMPETNLVS-WNSMI--CAFSENGFSRDSFDLLMEM 238


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/580 (38%), Positives = 339/580 (58%), Gaps = 6/580 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P   +  +I+ A  RL  L   +++HA+ I  G+  +  +   L+ +      ++Y  R
Sbjct: 258 KPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGR 317

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            F  +   D   + T     ++      +L   R++ +  +        +++ +C  L+ 
Sbjct: 318 AFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNC 377

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L   + +H +    G  SD  +Q  +++ Y +   +D A ++F+ +  K VV+W SMIS 
Sbjct: 378 LGKIKEIHGYTIRGGL-SDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISC 436

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y  NG A +A+ +F+ M++ G+ PD  T V +L+A   L  +  G+ +H FI+ +G  + 
Sbjct: 437 YVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILE 496

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             ++ +L++MYARCG+V  A +IF      N+I WTAMIS YGMHGYG  AVELF RM+ 
Sbjct: 497 GSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKD 556

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             + P+++TF+A+L AC+H+GLV EG      M+ EY L P  EH+ C+VDL GR   L 
Sbjct: 557 EKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLE 616

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EAY+ VK +  E P P VW A+LGAC++H N ++G   AE LL ++ +NPG+YV++SN++
Sbjct: 617 EAYQIVKSMQNE-PTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVF 675

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A  GR   VE VR  M   GL K+ G S +EV  K + F   DK HP  ++IYQ L ++ 
Sbjct: 676 AANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVT 735

Query: 482 GRC-REAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
            +  RE GYV +++  +H + EEE+   L  HSE+LA+A+GL+ T+ G  IR+ KNLR+C
Sbjct: 736 EKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVC 795

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCHS    +S    RE+IVRD  RFHHFK G CSC D+W
Sbjct: 796 GDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSCGDFW 835



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 224/460 (48%), Gaps = 25/460 (5%)

Query: 8   SPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           S  +  +LKA   ++ L    ++H   I  G      ++  L++L      I  A+++F 
Sbjct: 58  SYTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFD 117

Query: 65  CI-PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123
            +    D   +N++I   S     T++L  +  M+ + +  + YTF+A +++C   S + 
Sbjct: 118 RMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIK 177

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
           LG  +H  +  SG   D++V  ALV  Y +   +  A  +F  +  K +V WNSM++G+ 
Sbjct: 178 LGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFI 237

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG   EA+  F  +++  + PD  + + ++ A  +LG +  G+ +H + +  G D N++
Sbjct: 238 QNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNIL 297

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           +  +LI+MYA+C  +S     FD+M+  ++I+WT   +GY  +    +A+EL  +++  G
Sbjct: 298 VGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEG 357

Query: 304 VRPNNVTFVAVLSACAH---AGLVQEGHRVFASMRQEYGLLPGVEHHV---CMVDLFGRA 357
           +  +     ++L AC      G ++E H         Y +  G+   V    ++D++G  
Sbjct: 358 MDVDATMIGSILLACRGLNCLGKIKEIHG--------YTIRGGLSDPVLQNTIIDVYGEC 409

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHK---NFDLGVEVAEHLLSVEPENPGHY 414
           G+++ A +  + +  E      WT+M+ +C +H    N  L V  +     +EP+     
Sbjct: 410 GIIDYAVRIFESI--ECKDVVSWTSMI-SCYVHNGLANKALEVFSSMKETGLEPDYVTLV 466

Query: 415 VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
            +LS + +L+  + + + +   +I+KG       S   VD
Sbjct: 467 SILSAVCSLS-TLKKGKEIHGFIIRKGFILEGSISNTLVD 505



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 172/335 (51%), Gaps = 15/335 (4%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+ IF  +     F +N ++        +  +L  YR M    +S  +YTF  ++
Sbjct: 6   GSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLL 65

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS-V 172
           K+C  +  L  G  +H      G DS + V  +LV  YAK N+++ ARK+FDRM  ++ V
Sbjct: 66  KACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDV 125

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           V+WNS+IS Y  NG   EA+ LF+ M   GV  ++ T    L AC     I LG  +H  
Sbjct: 126 VSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAA 185

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           I+  G  ++V +A +L+ MY R G + +A  IF  +   +++ W +M++G+  +G  +EA
Sbjct: 186 ILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEA 245

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV---- 348
           +E F+ ++   ++P+ V+ ++++ A    G +  G  + A     Y +  G + ++    
Sbjct: 246 LEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHA-----YAIKNGFDSNILVGN 300

Query: 349 CMVDLFGRAGLLN---EAYKFV--KDVIGEKPAPA 378
            ++D++ +   ++    A+  +  KD+I    A A
Sbjct: 301 TLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAA 335



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 127/235 (54%), Gaps = 4/235 (1%)

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
           Y K  +V  A  +FD+M ++S+  WN+M+ GY  NG A  A+ ++  MR  GV+ DS T 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
             +L AC  + D+  G  +H   +  G D  V +  SL+ +YA+C +++ AR++FD M  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 271 LN-VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
            N V++W ++IS Y  +G  TEA+ LF  M   GV  N  TF A L AC  +  ++ G +
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           + A++ +  G +  V     +V ++ R G + EA     ++ G+      W +ML
Sbjct: 182 IHAAILKS-GRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKD--IVTWNSML 233



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MY +CG+V  A  IFD MSE ++  W AM+ GY  +G    A+E++  MR  GV  ++ T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 311 FVAVLSACAHAGLVQE 326
           F  +L AC   G+V++
Sbjct: 61  FPVLLKAC---GIVED 73


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/558 (38%), Positives = 320/558 (57%), Gaps = 33/558 (5%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+ +F  +P  ++  +  +I   ++   S ++L   + +  S + PS  + +++ 
Sbjct: 367 GMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIF 426

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
            +C+++  L  G  VH      G   +     AL+  Y K  N++ AR+VF RM  K +V
Sbjct: 427 FACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIV 486

Query: 174 AWNSMISGYEQNGF-------------------------------AKEAIGLFNLMRDFG 202
           +WNS ++   QN                                 + EA+G F  M    
Sbjct: 487 SWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEH 546

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
             P+S     +L  C  LG   +G+ +H   +  G+D  +++A +LI+MY +CG  + +R
Sbjct: 547 ELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSR 605

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
            IFD+M E ++  W  +I+GY  HG G EA++++  M + GV PN VTFV +L+AC+HAG
Sbjct: 606 RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAG 665

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           LV EG + F SM Q+YGL P  EH+ CMVDL GR G +  A +F+ D+  E P   +W+A
Sbjct: 666 LVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIE-PDTVIWSA 724

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LGACK+HKN ++G   AE L  +EP N G+YVMLSNIY+  G    V  VR IM Q+G+
Sbjct: 725 LLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGV 784

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
            K  G S  ++  K + F  GDK H    EI   L+EL    +  GYVP++E  +H+++E
Sbjct: 785 IKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDE 844

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           E++E SL YHSEKLA+A+ L+ T  GM I+I+KNLR+C DCH+ IKF+S  T R+I +RD
Sbjct: 845 EQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRD 904

Query: 563 RLRFHHFKRGSCSCLDYW 580
             RFHHF+ GSCSC D+W
Sbjct: 905 GNRFHHFRNGSCSCEDFW 922



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 152/328 (46%), Gaps = 15/328 (4%)

Query: 15  LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC-DAGFITYAQRIFFCIPSPDSFL 73
           +K    L  L+ +    +  G+ R   + T +L++   D   +  A + F  +   + + 
Sbjct: 234 VKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYT 293

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           ++T+I   S       ++  Y R  V +I+      +A+I   A       GR     + 
Sbjct: 294 WSTMIAALSHGGRIDAAIAVYERDPVKSIACR----TALITGLAQC-----GRIDDARIL 344

Query: 134 VSGYDSDLHVQ-AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI 192
                  + V   AL+  Y ++  V+ A+++FD+MP ++ ++W  MI+GY QNG ++EA+
Sbjct: 345 FEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEAL 404

Query: 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252
           GL   +   G+ P  ++   +  AC+ +  ++ G  VH   V  G   N     +LI MY
Sbjct: 405 GLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMY 464

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
            +C N+  AR++F  M   ++++W + ++    +    EA   F  M +     ++V++ 
Sbjct: 465 GKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWT 520

Query: 313 AVLSACAHAGLVQEGHRVFASMRQEYGL 340
            ++SA AHA    E    F +M  E+ L
Sbjct: 521 TIISAYAHAEQSNEAMGAFKTMFCEHEL 548



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 145/326 (44%), Gaps = 42/326 (12%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII-----------RNSKANF 86
           R+      ++S     G IT A+R+F  +PS D   +N+++            RN     
Sbjct: 125 RNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKM 184

Query: 87  STDSLLFYRRMIV--------------------SNISPSNYTFSAVIKSCAHLSILNLGR 126
              +L+ +  MI                       + P    F++ + +   L  L++  
Sbjct: 185 PERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLE 244

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNV-DVARKVFDRMPDKSVVAWNSMISGYEQN 185
           ++      +G++ D+ +  A++N Y++  +V D A K F+ M +++   W++MI+     
Sbjct: 245 SLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHG 304

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTC-VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           G    AI ++   RD      S  C   ++   AQ G ID  R + E I     +  VV 
Sbjct: 305 GRIDAAIAVYE--RD---PVKSIACRTALITGLAQCGRIDDARILFEQIP----EPIVVS 355

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             +LI  Y + G V++A+E+FD M   N I+W  MI+GY  +G   EA+ L   +   G+
Sbjct: 356 WNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGM 415

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRV 330
            P+  +  ++  AC++   ++ G +V
Sbjct: 416 LPSLSSLTSIFFACSNIVALETGTQV 441



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 55/295 (18%)

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           +A +    +   V  AR+VFD MP + ++AWNSMIS Y  NG    A  L++ +      
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS----G 93

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +  T   +L+   +LG +   R V + +    L+ N V   ++I+ Y + G+++ AR +
Sbjct: 94  GNMRTGAILLSGYGRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNGDITMARRL 149

Query: 265 FDM-------------------------------MSELNVIAWTAMISGYGMHGYGTEAV 293
           FD                                M E N+++WT MISGYG      +A 
Sbjct: 150 FDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAW 209

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAG--LVQEGHRVFASMRQEYGLLPGVEHHV--- 348
           ++F +M   G+ P+   F + LSA    G   V E  RV A       L  G E  V   
Sbjct: 210 DIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLA-------LKTGFERDVVIG 262

Query: 349 -CMVDLFGR-AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
             +++++ R   +L+ A KF + +I  +     W+ M+ A       D  + V E
Sbjct: 263 TAILNVYSRDTSVLDTAIKFFESMI--ERNEYTWSTMIAALSHGGRIDAAIAVYE 315



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 149/341 (43%), Gaps = 41/341 (12%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLI-----------IRN-----SKANFSTDSLLFY--- 94
           G +  A+ +F  +P  D   +N++I            R+     S  N  T ++L     
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYG 107

Query: 95  --------RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
                   RR+    +  +   ++A+I        + + R     +F +    D+    +
Sbjct: 108 RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMAR----RLFDAMPSRDVSSWNS 163

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           ++  Y  S  +  AR +F++MP++++V+W  MISGY +     +A  +F  M   G+ PD
Sbjct: 164 MLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPD 223

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV-SKAREIF 265
            +     L+A   LG++D+   +    +  G + +VV+ T+++N+Y+R  +V   A + F
Sbjct: 224 QSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFF 283

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           + M E N   W+ MI+     G    A+ ++ R     +        A+++  A  G + 
Sbjct: 284 ESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSI----ACRTALITGLAQCGRID 339

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           +   +F  + +     P V     ++  + + G++NEA + 
Sbjct: 340 DARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKEL 375



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           ++ V   ++ I    R G V +ARE+FD M   ++IAW +MIS Y  +G    A +L+  
Sbjct: 31  ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA 90

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
           +    +R   +    +LS     G V E  RVF  M
Sbjct: 91  ISGGNMRTGAI----LLSGYGRLGRVLEARRVFDGM 122


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/441 (44%), Positives = 300/441 (68%), Gaps = 7/441 (1%)

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           V  +L++ YA+S  ++ ARK FD + +K++V++N+++ GY +N  ++EA  LFN + D G
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           +   + T   +L+  A +G +  G  +H  ++  G   N  +  +LI+MY+RCGN+  A 
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAF 180

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           ++F+ M + NVI+WT+MI+G+  HG+ T A+E+FH+M   G +PN +T+VAVLSAC+H G
Sbjct: 181 QVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 240

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA---V 379
           ++ EG + F SM +E+G++P +EH+ CMVDL GR+GLL EA +F+  +    P  A   V
Sbjct: 241 MISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM----PLMADALV 296

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W  +LGAC++H N +LG   AE +L  EP++P  Y++LSN++A AG+   V  +R  M +
Sbjct: 297 WRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKE 356

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           + L K  G S +EV+ + + F +G+ SHP   +IYQ LD+L  + +E GY+P+++  +H+
Sbjct: 357 RNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHD 416

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           +EEE++E  L  HSEK+A+AFGL+ TS    IRI KNLR+C DCH+AIK+IS+AT REI+
Sbjct: 417 IEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIV 476

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           VRD  RFHH K G CSC DYW
Sbjct: 477 VRDSNRFHHIKNGVCSCNDYW 497



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 129/244 (52%), Gaps = 2/244 (0%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           L+S+   +G +  A++ F  +   +   +N ++   +K   S ++ L +  +  + I  S
Sbjct: 65  LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 124

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            +TF++++   A +  +  G  +H  +   GY S+  +  AL++ Y++  N++ A +VF+
Sbjct: 125 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 184

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            M D++V++W SMI+G+ ++GFA  A+ +F+ M + G  P+  T V VL+AC+ +G I  
Sbjct: 185 EMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISE 244

Query: 226 G-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL-NVIAWTAMISGY 283
           G +  +      G+   +     ++++  R G + +A E  + M  + + + W  ++   
Sbjct: 245 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 304

Query: 284 GMHG 287
            +HG
Sbjct: 305 RVHG 308



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 50/244 (20%)

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA-KEAIGLFNLMRDFGVNPDSTTC 210
           A   +VD +RKVF++MP+ +V++W ++I+ Y Q+G   KEAI LF  M    VN     C
Sbjct: 6   AADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVN-----C 60

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           V                                   SLI+MYAR G +  AR+ FD++ E
Sbjct: 61  V---------------------------------GNSLISMYARSGRMEDARKAFDILFE 87

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            N++++ A++ GY  +    EA  LF+ +   G+  +  TF ++LS  A  G + +G ++
Sbjct: 88  KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI 147

Query: 331 FASMRQEYGLLPGVEHHVC----MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
              +     L  G + + C    ++ ++ R G +  A++   ++  E      WT+M+  
Sbjct: 148 HGRL-----LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEM--EDRNVISWTSMITG 200

Query: 387 CKMH 390
              H
Sbjct: 201 FAKH 204



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 105/250 (42%), Gaps = 34/250 (13%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H  L+  GY  ++ +   L+S+    G I  A ++F  +   +   + ++I   +K 
Sbjct: 145 EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKH 204

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            F+T +L  + +M+ +   P+  T+ AV+ +C+H+ +++ G+                  
Sbjct: 205 GFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQ------------------ 246

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
                     N++     +  RM       +  M+    ++G   EA+   N M    + 
Sbjct: 247 -------KHFNSMYKEHGIVPRMEH-----YACMVDLLGRSGLLVEAMEFINSMP---LM 291

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            D+     +L AC   G+ +LGR   E I+ Q  D +      L N++A  G      +I
Sbjct: 292 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD-DPAAYILLSNLHASAGQWKDVVKI 350

Query: 265 FDMMSELNVI 274
              M E N+I
Sbjct: 351 RKSMKERNLI 360


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/558 (38%), Positives = 320/558 (57%), Gaps = 33/558 (5%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+ +F  +P  ++  +  +I   ++   S ++L   + +  S + PS  + +++ 
Sbjct: 367 GMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIF 426

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
            +C+++  L  G  VH      G   +     AL+  Y K  N++ AR+VF RM  K +V
Sbjct: 427 FACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIV 486

Query: 174 AWNSMISGYEQNGF-------------------------------AKEAIGLFNLMRDFG 202
           +WNS ++   QN                                 + EA+G F  M    
Sbjct: 487 SWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEH 546

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
             P+S     +L  C  LG   +G+ +H   +  G+D  +++A +LI+MY +CG  + +R
Sbjct: 547 ELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSR 605

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
            IFD+M E ++  W  +I+GY  HG G EA++++  M + GV PN VTFV +L+AC+HAG
Sbjct: 606 RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAG 665

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           LV EG + F SM Q+YGL P  EH+ CMVDL GR G +  A +F+ D+  E P   +W+A
Sbjct: 666 LVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIE-PDTVIWSA 724

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LGACK+HKN ++G   AE L  +EP N G+YVMLSNIY+  G    V  VR IM Q+G+
Sbjct: 725 LLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGV 784

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
            K  G S  ++  K + F  GDK H    EI   L+EL    +  GYVP++E  +H+++E
Sbjct: 785 IKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDE 844

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           E++E SL YHSEKLA+A+ L+ T  GM I+I+KNLR+C DCH+ IKF+S  T R+I +RD
Sbjct: 845 EQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRD 904

Query: 563 RLRFHHFKRGSCSCLDYW 580
             RFHHF+ GSCSC D+W
Sbjct: 905 GNRFHHFRNGSCSCEDFW 922



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 152/328 (46%), Gaps = 15/328 (4%)

Query: 15  LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC-DAGFITYAQRIFFCIPSPDSFL 73
           +K    L  L+ +    +  G+ R   + T +L++   D   +  A + F  +   + + 
Sbjct: 234 VKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYT 293

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           ++T+I   S       ++  Y R  V +I+      +A+I   A       GR     + 
Sbjct: 294 WSTMIAALSHGGRIDAAIAVYERDPVKSIACR----TALITGLAQC-----GRIDDARIL 344

Query: 134 VSGYDSDLHVQ-AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI 192
                  + V   AL+  Y ++  V+ A+++FD+MP ++ ++W  MI+GY QNG ++EA+
Sbjct: 345 FEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEAL 404

Query: 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252
           GL   +   G+ P  ++   +  AC+ +  ++ G  VH   V  G   N     +LI MY
Sbjct: 405 GLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMY 464

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
            +C N+  AR++F  M   ++++W + ++    +    EA   F  M +     ++V++ 
Sbjct: 465 GKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWT 520

Query: 313 AVLSACAHAGLVQEGHRVFASMRQEYGL 340
            ++SA AHA    E    F +M  E+ L
Sbjct: 521 TIISAYAHAEQSNEAMGAFKTMFCEHEL 548



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 145/326 (44%), Gaps = 42/326 (12%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII-----------RNSKANF 86
           R+      ++S     G IT A+R+F  +PS D   +N+++            RN     
Sbjct: 125 RNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKM 184

Query: 87  STDSLLFYRRMIV--------------------SNISPSNYTFSAVIKSCAHLSILNLGR 126
              +L+ +  MI                       + P    F++ + +   L  L++  
Sbjct: 185 PERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLE 244

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNV-DVARKVFDRMPDKSVVAWNSMISGYEQN 185
           ++      +G++ D+ +  A++N Y++  +V D A K F+ M +++   W++MI+     
Sbjct: 245 SLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHG 304

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTC-VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           G    AI ++   RD      S  C   ++   AQ G ID  R + E I     +  VV 
Sbjct: 305 GRIDAAIAVYE--RD---PVKSIACRTALITGLAQCGRIDDARILFEQIP----EPIVVS 355

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             +LI  Y + G V++A+E+FD M   N I+W  MI+GY  +G   EA+ L   +   G+
Sbjct: 356 WNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGM 415

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRV 330
            P+  +  ++  AC++   ++ G +V
Sbjct: 416 LPSLSSLTSIFFACSNIVALETGTQV 441



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 55/295 (18%)

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           +A +    +   V  AR+VFD MP + ++AWNSMIS Y  NG    A  L++ +      
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS----G 93

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +  T   +L+   +LG +   R V + +    L+ N V   ++I+ Y + G+++ AR +
Sbjct: 94  GNMRTGAILLSGYGRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNGDITMARRL 149

Query: 265 FDM-------------------------------MSELNVIAWTAMISGYGMHGYGTEAV 293
           FD                                M E N+++WT MISGYG      +A 
Sbjct: 150 FDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAW 209

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAG--LVQEGHRVFASMRQEYGLLPGVEHHV--- 348
           ++F +M   G+ P+   F + LSA    G   V E  RV A       L  G E  V   
Sbjct: 210 DIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLA-------LKTGFERDVVIG 262

Query: 349 -CMVDLFGR-AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
             +++++ R   +L+ A KF + +I  +     W+ M+ A       D  + V E
Sbjct: 263 TAILNVYSRDTSVLDTAIKFFESMI--ERNEYTWSTMIAALSHGGRIDAAIAVYE 315



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 149/341 (43%), Gaps = 41/341 (12%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLI-----------IRN-----SKANFSTDSLLFY--- 94
           G +  A+ +F  +P  D   +N++I            R+     S  N  T ++L     
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYG 107

Query: 95  --------RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
                   RR+    +  +   ++A+I        + + R     +F +    D+    +
Sbjct: 108 RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMAR----RLFDAMPSRDVSSWNS 163

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           ++  Y  S  +  AR +F++MP++++V+W  MISGY +     +A  +F  M   G+ PD
Sbjct: 164 MLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPD 223

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV-SKAREIF 265
            +     L+A   LG++D+   +    +  G + +VV+ T+++N+Y+R  +V   A + F
Sbjct: 224 QSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFF 283

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           + M E N   W+ MI+     G    A+ ++ R     +        A+++  A  G + 
Sbjct: 284 ESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSI----ACRTALITGLAQCGRID 339

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           +   +F  + +     P V     ++  + + G++NEA + 
Sbjct: 340 DARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKEL 375



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           ++ V   ++ I    R G V +ARE+FD M   ++IAW +MIS Y  +G    A +L+  
Sbjct: 31  ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA 90

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
           +    +R   +    +LS     G V E  RVF  M
Sbjct: 91  ISGGNMRTGAI----LLSGYGRLGRVLEARRVFDGM 122


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/527 (40%), Positives = 317/527 (60%), Gaps = 1/527 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A ++F  +   +   +N ++    +  F+ + L  +R M      P  +T  +V+
Sbjct: 37  GDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVL 96

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           + CA L     G+ VH +V   GY+ +L V ++L + Y KS ++    KV   M  ++VV
Sbjct: 97  RGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVV 156

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           AWN++I+G  QNG  +  + L+N+M+  G+ PD  T V V+++ A+L  +  G+ +H   
Sbjct: 157 AWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEA 216

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  G +  V + +SLI+MY++CG +  + +        + + W++MI+ YG HG G EAV
Sbjct: 217 IKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAV 276

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
            LF +M   G+  N+VTF+++L AC+H GL ++G   F  M ++YGL P +EH+ C+VDL
Sbjct: 277 HLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDL 336

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GR+G L+EA   ++ +  E     +W  +L AC++H+N D+    AE +L + P++   
Sbjct: 337 LGRSGCLDEAEAMIRSMPLEADV-VIWKTLLSACRIHRNADMATRTAEEILRLNPQDSAT 395

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+LSNI+A A R   V  VR  M  + +KK  G S +EV  + + FSMGDKSHP + EI
Sbjct: 396 YVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEI 455

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
             YL ELM   +  GYVP++ +  H+ + EE+E SL  HSEKLA+AFGLM   PG  IR+
Sbjct: 456 DLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRV 515

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +KNLR+C DCH AIK IS   NREIIVRD  RFHHFK G CSC DYW
Sbjct: 516 MKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 163/313 (52%), Gaps = 11/313 (3%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L+N + +  ++D A KVFD M +++V  WN+M+SG  Q  F +  + LF  M + G  PD
Sbjct: 29  LINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPD 88

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T   VL  CA L     G+ VH +++  G + N+V+ +SL +MY + G++ +  ++  
Sbjct: 89  EFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIK 148

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M   NV+AW  +I+G   +G+    ++L++ M+  G+RP+ +T V+V+S+ A    + +
Sbjct: 149 AMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQ 208

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G ++ A   +  G    V     ++ ++ + G L ++ K + D   E P   +W++M+ A
Sbjct: 209 GQQIHAEAIKA-GANSAVAVLSSLISMYSKCGCLEDSMKALLDC--EHPDSVLWSSMIAA 265

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPG--HYVMLSNIYALA--GRMDRVEVVRNIMIQK-G 441
              H   +  V + E +   E E  G      LS +YA +  G  ++      +M++K G
Sbjct: 266 YGFHGRGEEAVHLFEQM---EQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYG 322

Query: 442 LKKHVGYSTVEVD 454
           LK  + + T  VD
Sbjct: 323 LKPRLEHYTCVVD 335



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 148/317 (46%), Gaps = 9/317 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVHA+++  GY  +  + + L  +   +G +   +++   +   +   +NTLI  N++ 
Sbjct: 109 KQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQN 168

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
                 L  Y  M +S + P   T  +VI S A L+ L  G+ +H     +G +S + V 
Sbjct: 169 GHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVL 228

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ++L++ Y+K   ++ + K          V W+SMI+ Y  +G  +EA+ LF  M   G+ 
Sbjct: 229 SSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLG 288

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKARE 263
            +  T + +L AC+  G  + G    + +V + GL   +   T ++++  R G + +A  
Sbjct: 289 GNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEA 348

Query: 264 IFDMMS-ELNVIAWTAMISGYGMH---GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           +   M  E +V+ W  ++S   +H      T   E   R+       ++ T+V + +  A
Sbjct: 349 MIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQ----DSATYVLLSNIHA 404

Query: 320 HAGLVQEGHRVFASMRQ 336
            A   ++  +V  +MR 
Sbjct: 405 SAKRWKDVSKVRTTMRD 421



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           N++    LIN + + G++  A ++FD M E NV  W AM+SG     +    + LF  M 
Sbjct: 22  NIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMH 81

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ---EYGLLPGVEHHVCMVDLFGRA 357
             G  P+  T  +VL  CA       G +V A + +   E+ L+ G      +  ++ ++
Sbjct: 82  ELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSS----LAHMYMKS 137

Query: 358 GLLNEAYKFVK 368
           G L E  K +K
Sbjct: 138 GSLGEGEKVIK 148


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/546 (40%), Positives = 320/546 (58%), Gaps = 40/546 (7%)

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV---- 128
           L + LI   S++     +L  Y  ++ + + P+ +T  +++KS A LS    G AV    
Sbjct: 39  LHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMA-LSPAVPGAAVLALT 97

Query: 129 -HCHVFVSGYDSDLHVQAALVNF--------------------------------YAKSN 155
            H H    G D  + V  AL+                                  YA++ 
Sbjct: 98  VHTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAG 157

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
            +  AR +FD MP ++ V+W++M++GY Q G  +EA+ +F  M+   V PD T  V VLA
Sbjct: 158 RLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLA 217

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           ACAQ G ++ G+WVH ++   G+ +N+   T+L++MY++CG V  A ++F+ M   NV+A
Sbjct: 218 ACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLA 277

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           WT MI G  MHG G+EAV LF +M + G+RP+++ F+ VL AC HAGLV +G  +F SM 
Sbjct: 278 WTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMV 337

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
           ++YG+ P +EH+ CMVDL  R G L EA + ++ +  E P   +W A++  C+ HKN + 
Sbjct: 338 RKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPME-PDALIWGALMAGCRFHKNVEF 396

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
              VA+H + +EP+  G YV+LSNIYA +GR      +R++M +KG+ K  G STVEV+ 
Sbjct: 397 AEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVNG 456

Query: 456 KNYLFSMGDKSHPNTNEIYQYLDELMGRCR-EAGYVPESESAMHELEEEEREYSLRYHSE 514
             + F +GD SHP   +I     E+  R R E GY+P+ +  + ++EEEE+E +L  HSE
Sbjct: 457 VIHQFIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIEEEEKEGALSRHSE 516

Query: 515 KLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSC 574
           KLA+AF L+  S  M IRI KNLR+C DCH   K IS    REI+VRDR RFH FK G+C
Sbjct: 517 KLAIAFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDRTRFHLFKEGTC 576

Query: 575 SCLDYW 580
           SC DYW
Sbjct: 577 SCKDYW 582



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 126/248 (50%), Gaps = 2/248 (0%)

Query: 41  SMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS 100
           S    L++    AG +  A+ +F  +P+ ++  ++ ++    +A    ++L  + RM   
Sbjct: 144 STFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAE 203

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
           ++ P +     V+ +CA    L  G+ VH ++   G   +L    ALV+ Y+K   V +A
Sbjct: 204 DVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLA 263

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
             VF+RM  K+V+AW +MI G   +G   EA+ LF  M   G+ PD    + VL AC   
Sbjct: 264 MDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHA 323

Query: 221 GDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTA 278
           G +D GR + + +V + G+   +     ++++ AR G + +A+E+   M  E + + W A
Sbjct: 324 GLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGA 383

Query: 279 MISGYGMH 286
           +++G   H
Sbjct: 384 LMAGCRFH 391



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 39/257 (15%)

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL----GDIDL 225
           +SV   +++I    ++     A+ L+  +   G+ P   T   +L + A      G   L
Sbjct: 35  RSVELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVL 94

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINM--------------------------------YA 253
              VH   V  GLD  V+++ +LI +                                YA
Sbjct: 95  ALTVHTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYA 154

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           R G ++ AR +FD M   N ++W+AM++GY   G G EA+ +F RM+A  VRP++   V 
Sbjct: 155 RAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVG 214

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           VL+ACA  G +++G  V   ++  +G+   +     +VD++ + G +  A    + +  +
Sbjct: 215 VLAACAQHGALEQGKWVHGYLKA-HGIKINLFFGTALVDMYSKCGEVQLAMDVFERM--Q 271

Query: 374 KPAPAVWTAMLGACKMH 390
                 WT M+    MH
Sbjct: 272 YKNVLAWTTMIKGLAMH 288


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/582 (35%), Positives = 330/582 (56%), Gaps = 4/582 (0%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           K  +P+     +++     +  L   Q +H  +   G+     +   L+ +   +  +  
Sbjct: 146 KGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVED 205

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
             ++F  + +PD   +N L+     +         + +M++    P+ +TF +V++SC+ 
Sbjct: 206 GNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSS 265

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L     G+ VH H+  +  D D  V  ALV+ YAK+  ++ A   FDR+ ++ + +W  +
Sbjct: 266 LLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVI 325

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           ISGY Q   A++A+  F  M+  G+ P+  T    L+ C+ +  ++ GR +H   V  G 
Sbjct: 326 ISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGH 385

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             ++ + ++L+++Y +CG +  A  IF  +   ++++W  +ISGY  HG G +A+E F  
Sbjct: 386 FGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRM 445

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M + G+ P+  TF+ VLSAC+  GLV+EG + F SM + YG+ P +EH+ CMVD+ GRAG
Sbjct: 446 MLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAG 505

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
             NE   F+++ +   P   +W  +LGACK+H N D G + A+ L  +EP     Y++LS
Sbjct: 506 KFNEVKIFIEE-MNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLS 564

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           NI+A  GR D V  +R +M  +G+KK  G S VEVD + ++F   D SHP   EIY  LD
Sbjct: 565 NIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLD 624

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           +L       GYVP++E  +H +  +E+   L YHSE+LAL+F L+ T+    IRI KNLR
Sbjct: 625 KLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLR 684

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH  +K IS  TN+EI+VRD  RFHHFKRG+CSC D W
Sbjct: 685 ICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 203/447 (45%), Gaps = 36/447 (8%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+  + +HA  + +G      +   L+ +    G +  A ++F  I +PD   ++ +I  
Sbjct: 67  LREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITG 126

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
             +     ++   +  M      P+ +T S+++ +  ++  L  G+++H  +   G++SD
Sbjct: 127 LDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESD 186

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
             V   L+  Y KS  V+   KVF+ M +  +V+WN+++SG+  +        +F  M  
Sbjct: 187 NLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLL 246

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G  P+  T + VL +C+ L D + G+ VH  I+    D +  + T+L++MYA+   +  
Sbjct: 247 EGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLED 306

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A   FD +   ++ +WT +ISGY       +AV+ F +M+  G++PN  T  + LS C+H
Sbjct: 307 AGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSH 366

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI--------- 371
              ++ G ++ A +  + G    +     +VDL+G+ G +  A    K +I         
Sbjct: 367 MATLENGRQLHA-VAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNT 425

Query: 372 ----------GEK--------------PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
                     GEK              P  A +  +L AC      + G +  + +  + 
Sbjct: 426 IISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIY 485

Query: 408 PENPG--HYVMLSNIYALAGRMDRVEV 432
             NP   HY  + +I   AG+ + V++
Sbjct: 486 GINPSIEHYACMVDILGRAGKFNEVKI 512



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 139/261 (53%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+R+FF +P  +   +N L+   ++       L  + +M       S +T S V+K CA+
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
              L  G+ +H     SG + D  +  +LV+ Y+K   V  A KVF ++ +  VVAW++M
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           I+G +Q G  +EA  LF+LMR  G  P+  T   +++    +GD+  G+ +H  I   G 
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           + + +++  LI MY +   V    ++F+ M+  ++++W A++SG+           +F++
Sbjct: 184 ESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 299 MRAHGVRPNNVTFVAVLSACA 319
           M   G +PN  TF++VL +C+
Sbjct: 244 MLLEGFKPNMFTFISVLRSCS 264



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 102/174 (58%)

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           +++A ++F  MP+K+ V+WN++++GY Q G  K+ + LF  M++        T   VL  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           CA  G +  G+ +H   +  G +++  L  SL++MY++CG V  A ++F  +   +V+AW
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
           +AMI+G    G+G EA ELFH MR  G RPN  T  +++S   + G ++ G  +
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSI 174


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/589 (37%), Positives = 353/589 (59%), Gaps = 10/589 (1%)

Query: 1   MKNK-QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFI 56
           M+N   P+S     +L A  ++  L   +++H   +  G+     + T +L +      I
Sbjct: 212 MQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCI 271

Query: 57  TYAQRIFFCIP-SPDSFLFNTLIIRNSKANFSTDSL-LFYRRMIVSN--ISPSNYTFSAV 112
            YA+RIF  +    +   ++ ++      +F  ++L LF + +++ +  I  S  T + V
Sbjct: 272 DYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATV 331

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           I+ CA+L+ L+ G  +HC+   SG+  DL V   L++ YAK   ++ A + F+ M  +  
Sbjct: 332 IRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDA 391

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           V++ ++ISGY QNG ++E + +F  M+  G+NP+  T   VL ACA L  +  G   H +
Sbjct: 392 VSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCY 451

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
            +  G   + ++  +LI+MYA+CG +  AR++FD M +  +++W  MI  YG+HG G EA
Sbjct: 452 AIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEA 511

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           + LF  M++ G++P++VTF+ ++SAC+H+GLV EG   F +M Q++G++P +EH+ CMVD
Sbjct: 512 LLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVD 571

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L  RAGL  E + F++ +  E P   VW A+L AC+++KN +LG  V++ +  + PE+ G
Sbjct: 572 LLSRAGLFKEVHSFIEKMPLE-PDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTG 630

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF-SMGDKSHPNTN 471
           ++V+LSN+Y+  GR D    VR    ++G +K  G S +E+    + F   G +SHP   
Sbjct: 631 NFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLT 690

Query: 472 EIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTI 531
           +I   LDEL+   +  GY  ES     ++EEEE+E  L YHSEKLA+AFG++  SP   I
Sbjct: 691 QISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHI 750

Query: 532 RIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            + KNLR+C DCH+AIKFIS+ T R+I VRD  RFHHFK G C+C D+W
Sbjct: 751 IVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 210/414 (50%), Gaps = 18/414 (4%)

Query: 27  VHAHLIVAGYGRSRSMLT-------KLLSLVCDAGFITYAQRIFFCIP-SPDSFLFNTLI 78
           +H HL+   +    + LT       KL+ L      +  A+ +F  +P  P + +   L+
Sbjct: 31  IHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLL 90

Query: 79  IRNSKANFS-TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
           IR    N    +++  Y +M+   I+P+ +TF  V+K+C+ L   + GR +HC +     
Sbjct: 91  IRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRL 150

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
           +S+++V  ALV+FYAK   +D A++VFD+M  + VVAWNSMISG+  +  + + +    +
Sbjct: 151 ESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLV 210

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
                V+P+S+T V VL A AQ+  +  G+ +H F V +G   +VV+ T ++++Y +C  
Sbjct: 211 QMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQC 270

Query: 258 VSKAREIFDMMSEL-NVIAWTAMISGYGMHGYGTEAVELFHR---MRAHGVRPNNVTFVA 313
           +  AR IFDMM  + N + W+AM+  Y +  +  EA+ELF +   ++   +  + VT   
Sbjct: 271 IDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLAT 330

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           V+  CA+   +  G         + G +  +     ++ ++ + G++N A +F  ++  +
Sbjct: 331 VIRVCANLTDLSTG-TCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEM--D 387

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVE--VAEHLLSVEPENPGHYVMLSNIYALAG 425
                 +TA++     + N + G+   +   L  + PE      +L     LAG
Sbjct: 388 LRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAG 441



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 113/226 (50%), Gaps = 17/226 (7%)

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVG---QGLDVNV----VLATSLINMYARCGNVSKAR 262
           C  +L +C Q   +  G+ +H+ ++    +  + N+    V    L+++Y  C  +  AR
Sbjct: 12  CTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIAR 71

Query: 263 EIFDMMSEL--NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
            +FD M     NV+ W  +I  Y  +G   EA++L+++M  +G+ PN  TF  VL AC+ 
Sbjct: 72  HVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSA 131

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
                EG  +   +++   L   V     +VD + + G L++A K V D + ++   A W
Sbjct: 132 LKEASEGREIHCDIKR-LRLESNVYVSTALVDFYAKCGCLDDA-KEVFDKMHKRDVVA-W 188

Query: 381 TAMLGACKMHK-NFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALA 424
            +M+    +H+ ++D   EVA  L+ ++ + +P    ++  + A+A
Sbjct: 189 NSMISGFSLHEGSYD---EVARLLVQMQNDVSPNSSTIVGVLPAVA 231


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/576 (36%), Positives = 346/576 (60%), Gaps = 6/576 (1%)

Query: 10  AYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
            Y  +L A  RL  ++   + H  ++  G+G    ++  L+    + G    A  +F   
Sbjct: 113 TYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDES 172

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLG 125
              D   +N +I  +     S  +      M  + N+ P   T  +++ +CA L  L  G
Sbjct: 173 TVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG 232

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           + +H +    G D +L V  A+++ Y K ++++ A++VF+R+ +K V++W SM+SG  ++
Sbjct: 233 KFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKS 292

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G+ +EA+ LF  M+   +  D  T V VL+ACAQ G +D G+++H  I    ++ ++VL 
Sbjct: 293 GYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLE 352

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           T+L++MYA+CG++  A ++F  M   NV  W A+I G  MHG+G +A+ LF +M    + 
Sbjct: 353 TALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLM 412

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           P++VTF+A+L AC+HAGLV EG  +F +M+ ++ + P +EH+ C+VDL  RA  +++A  
Sbjct: 413 PDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALA 472

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
           F+++ +  K    +W  +LGAC+   +FDL  ++   ++ +EP++ G YVMLSN+YA   
Sbjct: 473 FIEN-MPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVS 531

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
           + D    +R  M  KG++K  G S +E++   + F  GD+SH  T +IY  ++E+  R  
Sbjct: 532 QWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVN 591

Query: 486 -EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
            + G+VP + + + ++EEEE+E+SL  HSEKLA+A GL+ T  G  IRIVKNLR+C DCH
Sbjct: 592 LDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCH 651

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S +K  S   NREI+ RDR RFHHFK GSCSC+D+W
Sbjct: 652 SFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 204/374 (54%), Gaps = 16/374 (4%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPDSFLFNTLIIRNS 82
           +Q HA L+      +    +KL+S +    +G + YA+++F  + +PD F+ NT+I   +
Sbjct: 28  KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
           ++    +++  Y  M+   +   NYT+  V+ +CA L  + LGR  HC V  +G+ SDL 
Sbjct: 88  RSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLF 147

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF- 201
           V  AL+ FY    +   A  VFD    + VV WN MI+ +   G +++A  L + M    
Sbjct: 148 VINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLD 207

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
            + PD  T V ++ ACAQLG+++ G+++H +    GLD N+ +  ++++MY +C ++  A
Sbjct: 208 NLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESA 267

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           +E+F+ + E +V++WT+M+SG    GY  EA+ LF +M+ + +  + +T V VLSACA  
Sbjct: 268 QEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQT 327

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEKPA 376
           G + +G  +   +  ++ +   +     +VD++ + G ++ A +      V++V      
Sbjct: 328 GALDQGKYIHL-LIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVF----- 381

Query: 377 PAVWTAMLGACKMH 390
              W A++G   MH
Sbjct: 382 --TWNALIGGLAMH 393


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/573 (38%), Positives = 353/573 (61%), Gaps = 11/573 (1%)

Query: 15  LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLF 74
           LK+   +   + +HAH+I +   R   +  +L+S     G    A  +F  +P  D   +
Sbjct: 55  LKSSSSVSICRIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSW 114

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           N+L+   +K     + L  + +M   S +  + +TF +VI +C      + G  VHC   
Sbjct: 115 NSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAM 174

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--KSVVAWNSMISGYEQNGFAKEA 191
             G   ++ V  ALVN Y K   V+ A ++F  MP+  KS+V+WNS+++   QNG   EA
Sbjct: 175 KLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEA 234

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV---HEFIVGQGLDVNVVLATSL 248
              F++MR  G  PD  T V +L AC    +  LGR V   H  I   GLD N+ + T+L
Sbjct: 235 FNCFDMMRVNGFFPDDATMVSLLQACE---NFPLGRMVEVLHGVIFTCGLDENLTIVTTL 291

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM-RAHGVRPN 307
           +N+Y++ G ++ +R++F+ +S+ + +AWTAM++GY MHG G EA+E F R+ R  G+ P+
Sbjct: 292 LNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPD 351

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           +VTF  +LSAC+H+GLV+EG   F  M   Y + P ++H+ CMVDL GR GLL++A++ +
Sbjct: 352 HVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELI 411

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           K++  E P   VW A+LGAC++H+N DLG E A++L++++P +P +Y+MLSN+Y+ AG  
Sbjct: 412 KNMPFE-PNSGVWGALLGACRVHRNIDLGKEAAKNLIALDPSDPRNYIMLSNMYSAAGLW 470

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           +    VR +M  K L ++ G S +E   K + F + D +HP+++ I++ L+E+M + ++ 
Sbjct: 471 NDASKVRTLMKNKVLTRNQGCSFIEHGNKIHRFVVDDYTHPDSHRIHKKLEEVMKKIQDV 530

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           G+V E+ES +H+++EE +   +  HSEK+ALA+GL+ T+  M + I+KNLR+C DCH+ +
Sbjct: 531 GFVHETESILHDVDEEVKIDMITKHSEKIALAYGLLVTNADMPLVIIKNLRICRDCHNTV 590

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KF+S+   R II+RD  RFH F  G CSC DYW
Sbjct: 591 KFVSMVEKRTIIIRDTKRFHQFSGGLCSCGDYW 623



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 176/387 (45%), Gaps = 37/387 (9%)

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
            +F + + L +  +   +  P   T    +KS + +SI    R +H HV  S    D  +
Sbjct: 26  CSFLSQTSLQFNAISTHHFDPFLSTLILHLKSSSSVSIC---RIIHAHVIKSLDYRDGFI 82

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR-DFG 202
              LV+ Y K      A  +FD MP K  V+WNS++SG  + G   E + +F  M+ D  
Sbjct: 83  GDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSE 142

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           +  +  T + V++AC      D G +VH   +  GL   V +  +L+NMY + G V  A 
Sbjct: 143 LKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAF 202

Query: 263 EIFDMM--SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
            +F  M  SE ++++W ++++    +G   EA   F  MR +G  P++ T V++L AC +
Sbjct: 203 RLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACEN 262

Query: 321 AGL---VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
             L   V+  H V  +     GL   +     +++L+ + G LN + K  +++   KP  
Sbjct: 263 FPLGRMVEVLHGVIFTC----GLDENLTIVTTLLNLYSKLGRLNNSRKVFEEI--SKPDK 316

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH----------------------YV 415
             WTAML    MH      +E  E ++  E   P H                      + 
Sbjct: 317 VAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFFR 376

Query: 416 MLSNIYALAGRMDRVEVVRNIMIQKGL 442
           ++S++Y +  R+D    + +++ + GL
Sbjct: 377 VMSDVYKVQPRLDHYSCMVDLLGRCGL 403


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/579 (38%), Positives = 345/579 (59%), Gaps = 24/579 (4%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           Q+VHAH+I   Y  S  + T+L+ L      +  A  +F  +P  +   +  +I   S+ 
Sbjct: 263 QRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQR 322

Query: 85  NFSTDSL-LFY-------------RRMIVSN-------ISPSNYTFSAVIKSCAHLSILN 123
            +++ +L LF+              ++ +SN         P+ +TF+ V+ SC       
Sbjct: 323 GYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFI 382

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
           LGR +H  +    Y+  + V ++L++ YAK   +  AR VF+ +P++ VV+  ++ISGY 
Sbjct: 383 LGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYA 442

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           Q G  +EA+ LF  ++  G+  +  T   VL A + L  +DLG+ VH  ++   +   VV
Sbjct: 443 QLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVV 502

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           L  SLI+MY++CGN++ +R IFD M E  VI+W AM+ GY  HG G E ++LF  MR   
Sbjct: 503 LQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREET 562

Query: 304 -VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ-EYGLLPGVEHHVCMVDLFGRAGLLN 361
            V+P++VT +AVLS C+H GL  +G  +F  M   +  + P +EH+ C+VDL GR+G + 
Sbjct: 563 KVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVE 622

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA++F+K +  E P  A+W ++LGAC++H N D+G    + LL +EP N G+YV+LSN+Y
Sbjct: 623 EAFEFIKKMPFE-PTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLY 681

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AGR + V  +R++M++K + K  G S++E+DQ  + F   D+SHP   EI   + EL 
Sbjct: 682 ASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELS 741

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              +E GYVP+    +H+++EE++E  L  HSEKLAL+FGL+ +   + IR++KNLR+CV
Sbjct: 742 TSFKEVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICV 801

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+  K+IS    RE+ +RD+ RFH    G CSC DYW
Sbjct: 802 DCHNFAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 180/371 (48%), Gaps = 50/371 (13%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI-SPSNYT---------------- 108
           +PS   +L  TL I   +  F++ S+   R +  SN  + S +T                
Sbjct: 179 VPSCIRYLILTLPIIIHQGCFNSKSMFLTRHVFPSNSRTLSTFTTHIHLQQPLLQMALHG 238

Query: 109 -------FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
                  ++A++  C +      G+ VH H+  + Y   + ++  L+  Y K +++  A 
Sbjct: 239 FNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAH 298

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF------NLMRDFGVN----------- 204
            VFD MP+++VV+W +MIS Y Q G+A +A+ LF      +L   + ++           
Sbjct: 299 NVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPW 358

Query: 205 ----PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
               P+  T   VL +C       LGR +H  I+    + +V + +SL++MYA+ G + +
Sbjct: 359 VCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHE 418

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           AR +F+ + E +V++ TA+ISGY   G   EA+ELF R++  G++ N VT+  VL+A + 
Sbjct: 419 ARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSG 478

Query: 321 AGLVQEGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
              +  G +V    +R E      +++   ++D++ + G L  + + + D + E+   + 
Sbjct: 479 LAALDLGKQVHNHVLRSEIPSFVVLQN--SLIDMYSKCGNLTYSRR-IFDTMYERTVIS- 534

Query: 380 WTAMLGACKMH 390
           W AML     H
Sbjct: 535 WNAMLVGYSKH 545


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/511 (41%), Positives = 317/511 (62%), Gaps = 9/511 (1%)

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISP-SNYTFSAVIKSCAHLSILNLGRAVHCH 131
           ++NT+I   S+++   ++++ Y  MI   I+P +N+TF  ++ SCA LS L  G  VH H
Sbjct: 1   MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           +   G++SDL V+ AL++ Y+   N+++AR +FD    + +V++N+MI GY +    + A
Sbjct: 61  IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLIN 250
           + LF  M+    N D  T V VL+ACA+LG  DLG R  H++I     + N +L  ++++
Sbjct: 121 LCLFGEMQ----NSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMD 176

Query: 251 MYARCGNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           MYA+CG++  A EIF  + +       + +MI+G   HG G  A+ +F  + + G++P+ 
Sbjct: 177 MYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDE 236

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           VTFV VL AC H+GL++EG ++F SM   YG+ P +EH+ CMVDL GR G L EAY  V+
Sbjct: 237 VTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQ 296

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
            +  E  +  +W A+L AC+ H N  +G    + LL +E ++   YV+LSNI A A + +
Sbjct: 297 KMPFEANS-VIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWE 355

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
               VR +M   G++K  G+S +E+    + F   DKSHP   EI   L ++  R + AG
Sbjct: 356 EARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAG 415

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           YVP +   M +++EEE+E  + YHSEKLALAFGLM  SP  TIRIVKNLR+C DCH A K
Sbjct: 416 YVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFK 475

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
            +S    REI VRD +RFHHF+ GSCSC+D+
Sbjct: 476 LVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 151/312 (48%), Gaps = 16/312 (5%)

Query: 6   PHSPAYEAILKAGPRL---KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P++  +  +L +  RL   +P  +VH+H+I  G+     +   L+ L    G +  A+ +
Sbjct: 33  PNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTL 92

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F      D   +NT+I   ++ N    +L  +  M  S+      T  AV+ +CA L   
Sbjct: 93  FDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSD----EVTLVAVLSACARLGAF 148

Query: 123 NLGRAVHCHVFVSG-YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--KSVVAWNSMI 179
           +LG+ ++     +G ++ +  + AA+++ YAK  ++D A ++F R+    K+   +NSMI
Sbjct: 149 DLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMI 208

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GL 238
           +G  Q+G  + AI +F  +   G+ PD  T V VL AC   G I+ G+ + E +    G+
Sbjct: 209 AGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGI 268

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHG---YGTEAVE 294
              +     ++++  R G + +A ++   M  E N + W A++S    HG    G  A +
Sbjct: 269 KPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQ 328

Query: 295 LFHRMRA-HGVR 305
               M A HG R
Sbjct: 329 KLLEMEAQHGAR 340


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/498 (41%), Positives = 308/498 (61%), Gaps = 13/498 (2%)

Query: 95  RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV-------SGYDSDLHVQAAL 147
           R+M+ S I P+  T  +V+  CA +  L  G+ +HC+          +G+  +  V   L
Sbjct: 354 RQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQL 413

Query: 148 VNFYAKSNNVDVARKVFDRMP--DKSVVAWNSMISGYEQNGFAKEAIGLFNLM--RDFGV 203
           ++ YAK   VD+AR +FD +   ++ VV W  MI GY Q+G A +A+ L + M   D   
Sbjct: 414 IDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQT 473

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIV-GQGLDVNVVLATSLINMYARCGNVSKAR 262
            P++ T  C L ACA L  + +G+ +H + +  Q   V + ++  LI+MYA+CG++  AR
Sbjct: 474 RPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDAR 533

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
            +FD M E N + WT++++GYGMHGYG EA+ +F  MR  G + + VT + VL AC+H+G
Sbjct: 534 LVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSG 593

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           ++ +G   F  M+ ++G+ PG EH+ C+VDL GRAG LN A + ++++  E P P VW A
Sbjct: 594 MIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPME-PPPVVWVA 652

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +L  C++H   +LG   A+ +  +   N G Y +LSN+YA AGR   V  +R++M  KG+
Sbjct: 653 LLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGI 712

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
           KK  G S VE  +    F +GDK+HP+  EIYQ L + M R ++ GYVPE+  A+H++++
Sbjct: 713 KKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDD 772

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           EE++  L  HSEKLALA+G++ T  G  IRI KNLR+C DCH+A  ++S   + EII+RD
Sbjct: 773 EEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRD 832

Query: 563 RLRFHHFKRGSCSCLDYW 580
             RFHHFK G CSC  YW
Sbjct: 833 SSRFHHFKNGLCSCKGYW 850



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 203/431 (47%), Gaps = 51/431 (11%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS--FLFNTLI 78
           +  ++ +H  L+  G   + ++ + L+S     G +++A  +    P  D+  + +N+LI
Sbjct: 41  ISQVKLIHQKLLSFGI-LTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLI 99

Query: 79  I---RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
                N +AN    S      +   + +P NYTF  V K+C  +S +  G + H    V+
Sbjct: 100 RSYGNNGRANKCLSSFCLMHSL---SWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVT 156

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G+ S++ V  ALV  Y++  ++  ARKVFD MP   VV+WNS+I  Y + G  K A+ +F
Sbjct: 157 GFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMF 216

Query: 196 NLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           + M  +FG  PD  T V VL  CA +G   LG+  H F V   +  N+ +   L++MYA+
Sbjct: 217 SKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAK 276

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR-------------- 300
            G + +A  +F  M   +V++W AM++GY   G   +AV LF +M+              
Sbjct: 277 FGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAA 336

Query: 301 ---------------------AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEY 338
                                + G++PN VT ++VLS CA  G +  G  +   +++   
Sbjct: 337 ISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPM 396

Query: 339 GLLP---GVEHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
            L     G E+ V   ++D++ +   ++ A      +  ++     WT M+G    H + 
Sbjct: 397 DLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDA 456

Query: 394 DLGVEVAEHLL 404
           +  +E+   + 
Sbjct: 457 NKALELLSEMF 467



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 188/412 (45%), Gaps = 53/412 (12%)

Query: 28  HAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFS 87
           HA   V G+  +  +   L+++    G ++ A+++F  +P  D   +N++I   +K    
Sbjct: 150 HALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKP 209

Query: 88  TDSLLFYRRMIVS-NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             +L  + +M       P + T   V+  CA +   +LG+  H     S    ++ V   
Sbjct: 210 KMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNC 269

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNS----------------------------- 177
           LV+ YAK   +D A  VF  MP K VV+WN+                             
Sbjct: 270 LVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMD 329

Query: 178 ------MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
                  ISGY Q G   EA+G+   M   G+ P+  T + VL+ CA +G +  G+ +H 
Sbjct: 330 VVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHC 389

Query: 232 FIVGQGLDV--------NVVLATSLINMYARCGNVSKAREIFDMMS--ELNVIAWTAMIS 281
           + +   +D+        N+V+   LI+MYA+C  V  AR +FD +S  E +V+ WT MI 
Sbjct: 390 YAIKYPMDLRKNGHGDENMVI-NQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIG 448

Query: 282 GYGMHGYGTEAVELFHRMRAHG--VRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEY 338
           GY  HG   +A+EL   M       RPN  T    L ACA    +  G ++ A ++R + 
Sbjct: 449 GYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQ 508

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
             +P    + C++D++ + G + +A + V D + EK     WT+++    MH
Sbjct: 509 NAVPLFVSN-CLIDMYAKCGDIGDA-RLVFDNMMEK-NEVTWTSLMTGYGMH 557


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/569 (38%), Positives = 334/569 (58%), Gaps = 33/569 (5%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L+S +   G +   Q +    P  D   + +LI   S+AN + +++  ++ M+   I+
Sbjct: 177 TMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIA 236

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN------- 156
           P   T  AV+ +CA L  L LGR++H  V   G  +  ++  AL++ YAK  +       
Sbjct: 237 PDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQV 296

Query: 157 -------------------------VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
                                    VDVAR +FD M  + ++ +NSM++GY  +G  +EA
Sbjct: 297 FDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREA 356

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           + LF  MR   +  D+ T V +L ACA LG +  GR +H  I  + ++ ++ L T+L++M
Sbjct: 357 LLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDM 416

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           Y +CG V +A  +F  M + +V  WTAMI+G   +G G  A+E F++MR  G +PN+V++
Sbjct: 417 YMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSY 476

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           +AVL+AC+H+ L+ EG   F  MR  Y + P +EH+ CM+DL GR+GLL+EA   VK  +
Sbjct: 477 IAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVK-TM 535

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
             +P   +W ++L AC++HK+ DL    AEHLL +EP+  G YV L NIY  + + +   
Sbjct: 536 PIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENAS 595

Query: 432 VVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVP 491
            +R +M ++ +KK  GYS++ V  + + F + DKSHP   EI   L+E+  R +  GY P
Sbjct: 596 KIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSP 655

Query: 492 ESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFIS 551
            +     +++EEE+E +L  HSEKLA+AFGL+  +P + + I KNLR+C DCHSAIK IS
Sbjct: 656 LTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLIS 715

Query: 552 VATNREIIVRDRLRFHHFKRGSCSCLDYW 580
              NREIIVRDR RFHHF+ G+CSC D+W
Sbjct: 716 RLWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 202/443 (45%), Gaps = 81/443 (18%)

Query: 19  PR-LKPLQQVHAHLIVAGY-----GRSRSMLTKLLS-LVCDAGFITYAQRIFFCIPSPDS 71
           PR ++   ++HA L  +G+       +R +L  L++ L      + YA  +F  +P P +
Sbjct: 9   PRTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PST 67

Query: 72  FLFNTLIIRNSKANFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI----LNLGR 126
           FLF+T +   S+A        L +RRM  + + P  +TF  + K C+  S     L L  
Sbjct: 68  FLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFK-CSSSSSRPHSLLLCT 126

Query: 127 AVHCHVFVSGYDSDL-HVQAALVNFYAKSNNVDVARKVFDRM------------------ 167
            +H     +   S    V  +L++ Y +      AR+ FD +                  
Sbjct: 127 MLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKM 186

Query: 168 -------------PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
                        P + V++W S+I+ Y +   A+EA+G F  M   G+ PD  T + VL
Sbjct: 187 GMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVL 246

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN----------------- 257
           +ACA+L D++LGR +H  +  +G+  +  L  +LI+MYA+CG+                 
Sbjct: 247 SACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRP 306

Query: 258 ---------------VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
                          V  AR +FD M   ++I + +M++GY   G   EA+ LF  MR H
Sbjct: 307 QSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRH 366

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
            +R +N T V +L+ACA  G +Q+G  + A + Q   +   +     ++D++ + G ++E
Sbjct: 367 DLRVDNFTVVNLLTACASLGALQQGRALHACIEQRL-VEADIYLGTALLDMYMKCGRVDE 425

Query: 363 AYKFVKDVIGEKPAPAVWTAMLG 385
           A   V   +G++     WTAM+ 
Sbjct: 426 A-TIVFQRMGKRDV-HTWTAMIA 446



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 129/311 (41%), Gaps = 45/311 (14%)

Query: 128 VHCHVFVSGY-----DSDLHVQAALVN-FYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           +H  +  SG+      S  H+  +LVN       ++  A  +FDRMP  + +   ++ + 
Sbjct: 18  LHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMPPSTFLFDTALRAC 77

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTT-------------------CVCVLAACAQL-- 220
                       LF  MR  GV PD  T                   C  + AAC +   
Sbjct: 78  SRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTML 137

Query: 221 ---GDIDLGRWVHEFI-VGQGLDV----------NVVLATSLINMYARCGNVSKAREIFD 266
                      +H +I +G   D           + V  T LI+  A+ G +   + +  
Sbjct: 138 PSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLS 197

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
                +VI+WT++I+ Y       EAV  F  M +HG+ P+ VT +AVLSACA    ++ 
Sbjct: 198 QAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLEL 257

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML-G 385
           G R    + +E G+       V ++D++ + G    A + V D +G  P P  W A++ G
Sbjct: 258 G-RSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQ-VFDALGRGPRPQSWNAIIDG 315

Query: 386 ACKMHKNFDLG 396
            CK H + D+ 
Sbjct: 316 YCK-HGHVDVA 325


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/575 (37%), Positives = 352/575 (61%), Gaps = 7/575 (1%)

Query: 10  AYEAILKA--GPR-LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
            Y+A++ A  G R ++ +++V  +++ +G+     ++ ++L +    G +  A+++F  +
Sbjct: 119 TYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEM 178

Query: 67  PSPDSFLFNTLIIRN-SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           P  D   + T+I       NFS    LF       N   S  TF+ +I++ A L ++ +G
Sbjct: 179 PEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSR-TFTTMIRASAGLGLVQVG 237

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           R +H      G   D  V  AL++ Y+K  +++ A  VFD+MP+K+ V WNS+I+ Y  +
Sbjct: 238 RQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALH 297

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G+++EA+  +  MRD G   D  T   V+  CA+L  ++  +  H  +V +G D ++V  
Sbjct: 298 GYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVAN 357

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           T+L++ Y++ G +  A  +F+ M   NVI+W A+I+GYG HG G EAVE+F +M   G+ 
Sbjct: 358 TALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMI 417

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           PN+VTF+AVLSAC+++GL + G  +F SM +++ + P   H+ CMV+L GR GLL+EAY+
Sbjct: 418 PNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYE 477

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
            ++     KP   +W  +L AC+MH+N +LG   AE+L  +EPE   +Y++L N+Y  +G
Sbjct: 478 LIRSA-PFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSG 536

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
           ++     V   + +KGL+     + +EV +++Y F  GDKSH  T EIY+ ++ +M    
Sbjct: 537 KLKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEIS 596

Query: 486 EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
             GYV E+++ + +++EEE+   L+YHSEKLA+AFGL+ T     ++I +  R+C DCHS
Sbjct: 597 RHGYVEENKALLPDVDEEEQRI-LKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHS 655

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           AIKFI++ T REI+VRD  RFHHF+ GSCSC DYW
Sbjct: 656 AIKFIAMVTGREIVVRDASRFHHFRDGSCSCGDYW 690



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 101/204 (49%), Gaps = 5/204 (2%)

Query: 189 KEAIGLFNLMR--DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
           +EA+ LF ++     G +   +T   +++AC  L  I   + V  ++V  G + ++ +  
Sbjct: 97  REAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMN 156

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
            ++ ++ +CG +  AR++FD M E ++ +W  MI G+   G  +EA  LF  M       
Sbjct: 157 RVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDG 216

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
            + TF  ++ A A  GLVQ G ++ +   +  G+         ++D++ + G + +A+  
Sbjct: 217 RSRTFTTMIRASAGLGLVQVGRQIHSCALKR-GVGDDTFVSCALIDMYSKCGSIEDAH-C 274

Query: 367 VKDVIGEKPAPAVWTAMLGACKMH 390
           V D + EK     W +++ +  +H
Sbjct: 275 VFDQMPEKTTVG-WNSIIASYALH 297


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/570 (38%), Positives = 329/570 (57%), Gaps = 10/570 (1%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS-PDSFLFNTLI 78
           R+  ++Q+H   +  G+    S+    ++     G +  A  +F+ +    D   +N++I
Sbjct: 153 RVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMI 212

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
           +   +      +L  Y+ MI        +T ++V+ +   L  L  GR  H  +  +G+ 
Sbjct: 213 VAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFH 272

Query: 139 SDLHVQAALVNFYAKSNNVD---VARKVFDRMPDKSVVAWNSMISGYEQNG-FAKEAIGL 194
            + HV + L++FY+K    D    + KVF  +    +V WN+MISGY  N   ++EA+  
Sbjct: 273 QNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKS 332

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN-VVLATSLINMYA 253
           F  M+  G  PD  + VCV +AC+ L     G+ +H   +   +  N + +  +LI++Y 
Sbjct: 333 FRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYY 392

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           + GN+  AR +FD M ELN +++  MI GY  HG+GTEA+ L+ RM   G+ PNN+TFVA
Sbjct: 393 KSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVA 452

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           +LSACAH G V EG + F +M++ + + P  EH+ CM+DL GRAG L EA +F+ D +  
Sbjct: 453 ILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFI-DAMPY 511

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVV 433
           KP    W A+LGAC+ HKN  L    A+ L+ ++P     YVML+N+YA AG+ + +  V
Sbjct: 512 KPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEEMASV 571

Query: 434 RNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPES 493
           R  M  K ++K  G S +EV +K ++F   D SHP   E+ +YL+E+M + ++ GYV + 
Sbjct: 572 RKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDK 631

Query: 494 ESAMHELEEEEREYS---LRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFI 550
           + AM + +E         L +HSEKLA+AFGLM T  G  I +VKNLR+C DCH+AIKF+
Sbjct: 632 KWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTRDGEEIVVVKNLRICGDCHNAIKFM 691

Query: 551 SVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S    REIIVRD LRFH FK G CSC DYW
Sbjct: 692 SAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 148/318 (46%), Gaps = 31/318 (9%)

Query: 86  FSTDSL--LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
           F+  SL  L+ + ++ S+   SN+ F  +   C  LS     RA     F S  + ++  
Sbjct: 25  FTGKSLHALYVKSIVASSTYLSNH-FVNLYSKCGCLS---YARAA----FDSTEEPNVFS 76

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
              +V  YAK + + +AR++FD  P    V++N++ISGY        A+ LF  MR+ G 
Sbjct: 77  YNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGF 136

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
             D  T   ++AAC     +DL + +H F V  G D    +  + +  Y++ G + +A  
Sbjct: 137 EVDGFTLSGLIAACCD--RVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVS 194

Query: 264 IFDMMSEL-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           +F  M  L + ++W +MI  YG H  G +A+ L+  M   G + +  T  +VL+A     
Sbjct: 195 VFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNA----- 249

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHH------VCMVDLFGRAG---LLNEAYKFVKDVIGE 373
           L    H +    RQ +G L     H        ++D + + G    ++++ K  ++++  
Sbjct: 250 LTSLDHLIGG--RQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILS- 306

Query: 374 KPAPAVWTAMLGACKMHK 391
            P   +W  M+    M++
Sbjct: 307 -PDLVLWNTMISGYSMNE 323



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 78/210 (37%), Gaps = 53/210 (25%)

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV-------- 273
           D+  G+ +H   V   +  +  L+   +N+Y++CG +S AR  FD   E NV        
Sbjct: 23  DLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVK 82

Query: 274 -----------------------IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
                                  +++  +ISGY        A+ LF RMR  G   +  T
Sbjct: 83  AYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFT 142

Query: 311 FVAVLSACA---------HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
              +++AC          H   V  G   ++S+   +            V  + + GLL 
Sbjct: 143 LSGLIAACCDRVDLIKQLHCFAVSGGFDSYSSVNNAF------------VTYYSKGGLLR 190

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHK 391
           EA      + G +   + W +M+ A   HK
Sbjct: 191 EAVSVFYGMDGLRDEVS-WNSMIVAYGQHK 219


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/557 (39%), Positives = 329/557 (59%), Gaps = 39/557 (7%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H      G   +  +   L+S+    GF++ A+ +   +   D   +N+L++  ++ 
Sbjct: 160 RKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQN 219

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               D+L   R M    IS    T ++++ + ++ +                        
Sbjct: 220 QRFDDALEVCREMESVKISHDAGTMASLLPAVSNTT------------------------ 255

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
                    + NV   + +F +M  KS+V+WN MI  Y +N    EA+ L++ M   G  
Sbjct: 256 ---------TENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFE 306

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD+ +   VL AC     + LG+ +H +I  + L  N++L  +LI+MYA+CG + KAR++
Sbjct: 307 PDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDV 366

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ M   +V++WTAMIS YG  G G +AV LF +++  G+ P+++ FV  L+AC+HAGL+
Sbjct: 367 FENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLL 426

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           +EG   F  M   Y + P +EH  CMVDL GRAG + EAY+F++D+  E P   VW A+L
Sbjct: 427 EEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSME-PNERVWGALL 485

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GAC++H + D+G+  A+ L  + PE  G+YV+LSNIYA AGR + V  +RNIM  KGLKK
Sbjct: 486 GACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKK 545

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
           + G S VEV++  + F +GD+SHP ++EIY+ LD L+ + +E GYVP+SESA+H++EEE+
Sbjct: 546 NPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEED 605

Query: 505 REYSLRYHSEKLALAFGLMRT-----SPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           +E  L  HSEKLA+ F LM T         TIRI KNLR+C DCH A K IS  T+REII
Sbjct: 606 KETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREII 665

Query: 560 VRDRLRFHHFKRGSCSC 576
           +RD  RFH F+ G CSC
Sbjct: 666 IRDTNRFHVFRFGVCSC 682



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 133/276 (48%), Gaps = 5/276 (1%)

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           R VH  + +     +  +   L+  YA   +V  ARKVFD +P+++V+  N MI  Y  N
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           GF  E + +F  M    V PD  T  CVL AC+  G I +GR +H      GL   + + 
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
             L++MY +CG +S+AR + D MS  +V++W +++ GY  +    +A+E+   M +  + 
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
            +  T  ++L A ++     E       M  + G    V  +V M+ ++ +  +  EA +
Sbjct: 239 HDAGTMASLLPAVSNT--TTENVMYVKDMFFKMGKKSLVSWNV-MIGVYMKNAMPVEAVE 295

Query: 366 FVK--DVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
                +  G +P     T++L AC       LG ++
Sbjct: 296 LYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKI 331


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/556 (37%), Positives = 332/556 (59%), Gaps = 6/556 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           ++VH H+   GY     +   L+++      +  AQ +F  +P  +   + T+I   S A
Sbjct: 305 KRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNA 364

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             +  ++     M    + P+ +TFS+V+++C  L  L   + +H  +   G +SD+ V+
Sbjct: 365 QLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL---KQLHSWIMKVGLESDVFVR 421

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           +AL++ Y+K   +  A KVF  M     V WNS+I+ + Q+    EA+ L+  MR  G  
Sbjct: 422 SALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFP 481

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            D +T   VL AC  L  ++LGR  H  ++    D +++L  +L++MY +CG++  A+ I
Sbjct: 482 ADQSTLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFI 539

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ M++ +VI+W+ MI+G   +G+  EA+ LF  M+  G +PN++T + VL AC+HAGLV
Sbjct: 540 FNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLV 599

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG   F SM   YG+ PG EH+ CM+DL GRA  L++  K + ++  E P    W  +L
Sbjct: 600 NEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCE-PDVVTWRTLL 658

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            AC+  +N DL    A+ +L ++P++ G YV+LSNIYA++ R + V  VR  M ++G++K
Sbjct: 659 DACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRK 718

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S +EV+++ + F +GDKSHP  +EI + L++ + R   AGYVP++   + +LE E+
Sbjct: 719 EPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQ 778

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           RE SLRYHSEKLA+ FG+M      TIRI KNL++C DCH   K I+    R I++RD +
Sbjct: 779 REDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPI 838

Query: 565 RFHHFKRGSCSCLDYW 580
           R+HHF+ G CSC DYW
Sbjct: 839 RYHHFQDGVCSCGDYW 854



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 163/316 (51%), Gaps = 11/316 (3%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T+S +IK C     +  G+ VH H+F +GY     +   L+N Y K N ++ A+ +FD+M
Sbjct: 287 TYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKM 346

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
           P+++VV+W +MIS Y        A+ L   M   GV P+  T   VL AC +L D+   +
Sbjct: 347 PERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL---K 403

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +H +I+  GL+ +V + ++LI++Y++ G + +A ++F  M   + + W ++I+ +  H 
Sbjct: 404 QLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHS 463

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEH 346
            G EA+ L+  MR  G   +  T  +VL AC    L++ G +     ++ +  L+     
Sbjct: 464 DGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQDLIL---- 519

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406
           +  ++D++ + G L +A KF+ + + +K   + W+ M+        F +        + V
Sbjct: 520 NNALLDMYCKCGSLEDA-KFIFNRMAKKDVIS-WSTMIAGLA-QNGFSMEALNLFESMKV 576

Query: 407 EPENPGHYVMLSNIYA 422
           +   P H  +L  ++A
Sbjct: 577 QGPKPNHITILGVLFA 592



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 147/279 (52%), Gaps = 4/279 (1%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P+   + ++L+A  RL  L+Q+H+ ++  G      + + L+ +    G +  A ++F  
Sbjct: 384 PNMFTFSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFRE 443

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           + + DS ++N++I   ++ +   ++L  Y+ M          T ++V+++C  LS+L LG
Sbjct: 444 MMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELG 503

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           R  H HV    +D DL +  AL++ Y K  +++ A+ +F+RM  K V++W++MI+G  QN
Sbjct: 504 RQAHVHVL--KFDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQN 561

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG-QGLDVNVVL 244
           GF+ EA+ LF  M+  G  P+  T + VL AC+  G ++ G +    +    G+D     
Sbjct: 562 GFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREH 621

Query: 245 ATSLINMYARCGNVSK-AREIFDMMSELNVIAWTAMISG 282
              ++++  R   +    + I +M  E +V+ W  ++  
Sbjct: 622 YGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDA 660


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/638 (36%), Positives = 352/638 (55%), Gaps = 68/638 (10%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLL--SLVCDAGFITYAQRIFFCIP 67
           A+ ++L     LKP +Q+HA +   G      +  KLL    +  +  + YA R+F   P
Sbjct: 4   AWVSLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFP 63

Query: 68  SPDSFLFNTLIIRNSKANFSTDSL-LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           +PD+F+ NTLI   S +     SL  F +      +SP ++TF+  +K+ A+   L  G 
Sbjct: 64  NPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGI 123

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS--------- 177
            +H   F  G+D+ + V   L++ YA+  +   AR+VFD M + +VV WN+         
Sbjct: 124 QLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCG 183

Query: 178 ----------------------MISGYEQN--------------------------GFA- 188
                                 M++GY +                           GFA 
Sbjct: 184 DVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAH 243

Query: 189 ----KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
                EA G F  +    +  +  +   VL+ACAQ G  + G+ +H F+   G      +
Sbjct: 244 NGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSV 303

Query: 245 ATSLINMYARCGNVSKAREIF-DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
             +LI+ Y++CGNV+ AR +F +M    ++++WT++I+G  MHG G EA++LFH M   G
Sbjct: 304 NNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESG 363

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           VRP+ +TF+++L AC+H+GLV+EG  +F+ M+  YG+ P +EH+ CMVDL+GRA  L +A
Sbjct: 364 VRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKA 423

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
           Y+F+ + +   P   +W  +LGAC +H N ++   V   L  ++P+N G +V+LSN+YA+
Sbjct: 424 YEFICE-MPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAV 482

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
           AG+   V  +R  M +  +KK  G+S +E+D+  Y F  G+K +  T E ++ L E+M R
Sbjct: 483 AGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLR 542

Query: 484 CR-EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
            R EAGY P+  S +H++EEEE+E S+  HSEKLA AFG+ +   G  +RIVKNLR+C D
Sbjct: 543 LRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGD 602

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+ +K IS     EIIVRDR RFH FK G CSC DYW
Sbjct: 603 CHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 154/310 (49%), Gaps = 12/310 (3%)

Query: 5   QPHSPAYEAILKAGPR---LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   + A+L A  R   ++  Q V   + V    R+ +    +L+    AG +  A+R
Sbjct: 166 EPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPV----RNLTSWNGMLAGYAKAGELGLARR 221

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F+ +P  D   ++T+I+  +      ++  F+R ++   I  +  + + V+ +CA    
Sbjct: 222 VFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGA 281

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMIS 180
              G+ +H  V  +G+     V  AL++ Y+K  NV +AR VF  MP  +S+V+W S+I+
Sbjct: 282 FEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIA 341

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG-QGLD 239
           G   +G  +EAI LF+ M + GV PD  T + +L AC+  G ++ G  +   +    G++
Sbjct: 342 GLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIE 401

Query: 240 VNVVLATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             +     ++++Y R   + KA E I +M    N I W  ++    +HG   E  EL  +
Sbjct: 402 PAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHG-NIEMAELV-K 459

Query: 299 MRAHGVRPNN 308
            R   + P+N
Sbjct: 460 ARLAEMDPDN 469


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/530 (41%), Positives = 318/530 (60%), Gaps = 38/530 (7%)

Query: 87  STDSLLFYRRMI-VSNISPSNYTFSAVIKSCAH-LSILNLGRAVHCHVFVSGYDSDLHVQ 144
           S +S+  +  M+ VS   P+ YTF  V K+C + L +L  G  +  H    G +S+L V 
Sbjct: 12  SHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLE-GEQIRVHAIKIGLESNLFVT 70

Query: 145 AALVNFYAKSNNVDVARKVFD-------------------------------RMPDKSVV 173
            A++  YA    VD AR+VFD                                M ++ VV
Sbjct: 71  NAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVV 130

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           +W ++I+GY Q G  KEA+ LF+ M   G  P+  T    LAACA L  +D GRW+H +I
Sbjct: 131 SWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYI 190

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIF--DMMSELNVIAWTAMISGYGMHGYGTE 291
               + +N  L  SL++MYA+CG +  A ++F  +   +L V  W AMI GY MHG   E
Sbjct: 191 DKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKE 250

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           A++LF +M+   V PN VTFVA+L+AC+H  LV+EG   F SM   YG+ P +EH+ CMV
Sbjct: 251 AIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMV 310

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411
           DL GR+GLL EA + V + +   P   +W A+LGAC++HK+ + G  + + +  ++ ++ 
Sbjct: 311 DLLGRSGLLKEAEETVFN-MPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHI 369

Query: 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTN 471
           G +V+L+N+Y+ +G+ D  + VR  +   G KK  G S++E++   + F +GD+SHP T 
Sbjct: 370 GCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTK 429

Query: 472 EIYQYLDELMGRCREAGYVPESESAMHELEEEE-REYSLRYHSEKLALAFGLMRTSPGMT 530
           ++Y +LDE+  + + AGYVPE    + ++++EE +E +L  HSEKLA+AFGL+ T PG  
Sbjct: 430 QLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTA 489

Query: 531 IRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           IRIVKNLR+C DCH A KFIS    REIIVRDR+R+HHFK G CSC DYW
Sbjct: 490 IRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 4/238 (1%)

Query: 53  AGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAV 112
           +G I  A+ +F  +   D   + T+I    +     ++L  +  M+ +   P+ +T ++ 
Sbjct: 111 SGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASA 170

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF-DRMPDK- 170
           + +CA+L  L+ GR +H ++  S    +  + A+L++ YAK   +D A KVF D    K 
Sbjct: 171 LAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKL 230

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR-WV 229
            V  WN+MI GY  +G +KEAI LF  M+   V+P+  T V +L AC+    ++ GR + 
Sbjct: 231 KVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYF 290

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMH 286
                  G++  +     ++++  R G + +A E +F+M    +   W A++    +H
Sbjct: 291 KSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIH 348



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 53/271 (19%), Positives = 107/271 (39%), Gaps = 53/271 (19%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+     + L A   L  L Q   +H ++  +    +  +L  LL +    G I +A ++
Sbjct: 162 PNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKV 221

Query: 63  FFCIPSPDSF-------LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           F      D +        +N +I   +    S +++  + +M V  +SP+  TF A++ +
Sbjct: 222 FH-----DEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNA 276

Query: 116 CAHLSILNLGRAVHCHVFVS-GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           C+H  ++  GR     +  S G + ++     +V+   +S  +  A +    MP      
Sbjct: 277 CSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMP------ 330

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
                                       + PD+T    +L AC    DI+ G+ + + I 
Sbjct: 331 ----------------------------MAPDATIWGALLGACRIHKDIERGQRIGKII- 361

Query: 235 GQGLDVNVVLATSLI-NMYARCGNVSKAREI 264
            + LD + +    L+ N+Y+  G   +A+ +
Sbjct: 362 -KELDSDHIGCHVLLANLYSASGQWDEAKAV 391


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/527 (38%), Positives = 320/527 (60%), Gaps = 9/527 (1%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+R+F   P  D F +  ++   ++     ++   +  M   N    N   +A +
Sbjct: 307 GDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYV 366

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           +         L  A+ C    S           ++  YA++  +D AR +F  MP K  V
Sbjct: 367 QRRMMEEAKELFDAMPCRNVAS--------WNTMLTGYAQAGMLDEARAIFGMMPQKDAV 418

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           +W +M++ Y Q GF++E + LF  M   G   + +   CVL+ CA +  ++ G  +H  +
Sbjct: 419 SWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRL 478

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  G  V   +  +L+ MY +CG++ +A   F+ M E +V++W  MI+GY  HG+G EA+
Sbjct: 479 IKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEAL 538

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           E+F  MR    +P+++T V VL+AC+H+GLV++G   F SM +++G+    EH+ CM+DL
Sbjct: 539 EVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDL 598

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GRAG L+EA   +KD+  E P   +W A+LGA ++H+N +LG   AE +  +EPEN G 
Sbjct: 599 LGRAGRLDEAVNLMKDMPFE-PDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGM 657

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+LSNIYA +G+   V+ +R+IM ++G+KK  G+S +EV  K + FS+GD  HP   +I
Sbjct: 658 YVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDI 717

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           Y +L++L  R ++AGYV  ++  +H++EEEE+E+ L+YHSEKLA+A+G+++  PG  IR+
Sbjct: 718 YAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRV 777

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +KNLR+C DCH+A K IS    R II+RD  RFHHF+ GSCSC DYW
Sbjct: 778 IKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 120/540 (22%), Positives = 216/540 (40%), Gaps = 135/540 (25%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQ---VHAH-----------LIVAGYGRSRSMLTKLLS 48
           +++P +PA +A +   P ++ +++   + AH           L  A   RS S    +L+
Sbjct: 88  HRRPPAPA-DACITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLA 146

Query: 49  LVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYT 108
                G +  A   F  IP PDSF +NTL+     ++   D    +  M V +    + +
Sbjct: 147 GYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKD----SVS 202

Query: 109 FSAVIKSCAHLSILNLGR----------AVHCHVFVSGYDSDLHVQAA------------ 146
           ++ +I S A+  +++L R          AV  +  ++ Y  +  +Q A            
Sbjct: 203 YNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDA 262

Query: 147 -----LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
                L+  Y + + ++ A+K+F++MP + VV+WN+M+SGY + G   EA  LF    D 
Sbjct: 263 ISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF----DV 318

Query: 202 GVNPDSTTCVCVLAACAQLGDID--------------------LGRWVHEFIVGQGLDV- 240
               D  T   +++  AQ G ++                    +  +V   ++ +  ++ 
Sbjct: 319 APIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELF 378

Query: 241 ------NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
                 NV    +++  YA+ G + +AR IF MM + + ++W AM++ Y   G+  E ++
Sbjct: 379 DAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQ 438

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACA-----------HAGLVQEGHRV------------- 330
           LF  M   G   N   F  VLS CA           H+ L++ G+ V             
Sbjct: 439 LFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYF 498

Query: 331 -FASMRQEYGLLPGVEHHV-----CMVDLFGRAGLLNEAYKFVKDV--IGEKPAPAVWTA 382
              SM + +     +E         M+  + R G   EA +    +     KP       
Sbjct: 499 KCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVG 558

Query: 383 MLGAC--------------KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
           +L AC               MH++F +  +            P HY  + ++   AGR+D
Sbjct: 559 VLAACSHSGLVEKGISYFYSMHRDFGVATK------------PEHYTCMIDLLGRAGRLD 606



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 155/367 (42%), Gaps = 60/367 (16%)

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF------------ 195
           +  + ++  V  A ++F  MP +S   +N+M++GY  NG   +A+  F            
Sbjct: 114 ITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYN 173

Query: 196 NLMRDFGVN---------------PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
            L+   GV+                DS +   ++++ A  G + L R  H F +    D 
Sbjct: 174 TLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLAR--HYFDLAPEKD- 230

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
             V    ++  Y R G + +ARE+FD  +E + I+W A+++GY       EA ++F++M 
Sbjct: 231 -AVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMP 289

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
              V    V++  ++S  A  G + E  R+F     +   +  V     +V  + + G+L
Sbjct: 290 QRDV----VSWNTMVSGYARRGDMAEARRLF-----DVAPIRDVFTWTAIVSGYAQNGML 340

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP-ENPGHYVMLSN 419
            EA K V D + +K A   W AM+ A    +     +E A+ L    P  N   +  +  
Sbjct: 341 EEA-KRVFDAMPDKNA-VSWNAMMAAYVQRRM----MEEAKELFDAMPCRNVASWNTMLT 394

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
            YA AG +D    +  +M Q   K  V ++ +        FS          E  Q   E
Sbjct: 395 GYAQAGMLDEARAIFGMMPQ---KDAVSWAAMLAAYSQIGFS---------EETLQLFKE 442

Query: 480 LMGRCRE 486
            MGRC E
Sbjct: 443 -MGRCGE 448



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 99/243 (40%), Gaps = 37/243 (15%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           Q+H+ LI AGYG    +   LL++    G +  A   F  +   D   +NT+I   ++  
Sbjct: 473 QLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHG 532

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
           F  ++L  +  M  ++  P + T   V+ +C+H  +                     V+ 
Sbjct: 533 FGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGL---------------------VEK 571

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
            +  FY+   +  VA K     P+     +  MI    + G   EA+   NLM+D    P
Sbjct: 572 GISYFYSMHRDFGVATK-----PEH----YTCMIDLLGRAGRLDEAV---NLMKDMPFEP 619

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG---NVSKAR 262
           DST    +L A     + +LGR   E I     + N  +   L N+YA  G   +V K R
Sbjct: 620 DSTMWGALLGASRIHRNSELGRNAAEKIFELEPE-NAGMYVLLSNIYASSGKWRDVDKMR 678

Query: 263 EIF 265
            I 
Sbjct: 679 HIM 681


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/527 (38%), Positives = 323/527 (61%), Gaps = 9/527 (1%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G I  A+++F   P  D F +  ++    +     ++   + RM   N    N   +  +
Sbjct: 259 GEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYV 318

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           +         L   + C         ++     ++  YA+   +  A+ +FD+MP +  V
Sbjct: 319 QGERVEMAKELFDVMPCR--------NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPV 370

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           +W +MI+GY Q+G + EA+ LF LM   G   + ++    L+ CA +  ++LG+ +H  +
Sbjct: 371 SWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRL 430

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           V  G +    +  +L+ MY +CG++ +A ++F  M+  ++++W  MI+GY  HG+G EA+
Sbjct: 431 VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEAL 490

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
             F  M+  G++P++ T VAVLSAC+H GLV +G + F +M Q+YG+ P  +H+ CMVDL
Sbjct: 491 RFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDL 550

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GRAGLL EA+  +K++  E P  A+W  +LGA ++H N +L    A+ + ++EPEN G 
Sbjct: 551 LGRAGLLEEAHNLMKNMPFE-PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGM 609

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+LSN+YA +GR   V  +R  M  KG+KK  GYS +E+  K + FS+GD+ HP  +EI
Sbjct: 610 YVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEI 669

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           + +L++L  R ++AGYV ++   +H++EEEE+E  +RYHSE+LA+A+G+MR S G  IR+
Sbjct: 670 FAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRV 729

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +KNLR+C DCH+AIK+++  T R II+RD  RFHHFK GSCSC DYW
Sbjct: 730 IKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 3/259 (1%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           R+ S    +++     G I+ A+ +F  +P  D   +  +I   S++  S ++L  +  M
Sbjct: 336 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLM 395

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
                  +  +FS+ + +CA +  L LG+ +H  +   GY++   V  AL+  Y K  ++
Sbjct: 396 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 455

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
           + A  +F  M  K +V+WN+MI+GY ++GF +EA+  F  M+  G+ PD  T V VL+AC
Sbjct: 456 EEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSAC 515

Query: 218 AQLGDIDLGR-WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIA 275
           +  G +D GR + H      G+  N      ++++  R G + +A  +   M  E +   
Sbjct: 516 SHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAI 575

Query: 276 WTAMISGYGMHGYGTEAVE 294
           W  ++    +HG  TE  E
Sbjct: 576 WGTLLGASRVHG-NTELAE 593



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 116/470 (24%), Positives = 197/470 (41%), Gaps = 86/470 (18%)

Query: 27  VHAHLIVAGYGRSRSM-----------------LTKLLSLVCDAGFITYAQRIFFCIPSP 69
           V  ++++ GY R+R++                    +LS     G +  A+R+F  +P  
Sbjct: 122 VSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEK 181

Query: 70  DSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           +   +N L+   ++NSK       +LF           S   ++ V  +C     +   +
Sbjct: 182 NDVSWNALLSAYVQNSK--LEEACVLF----------GSRENWALVSWNCLLGGFVKKKK 229

Query: 127 AVHCHVFVSGYDS----DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            V    F   +DS    D+     ++  YA++  +D AR++FD  P   V  W +M+SGY
Sbjct: 230 IVEARQF---FDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGY 286

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            QN   +EA  LF+ M +     +  +   +LA   Q   +++ + + + +  +    NV
Sbjct: 287 IQNRMVEEARELFDRMPE----RNEVSWNAMLAGYVQGERVEMAKELFDVMPCR----NV 338

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
               ++I  YA+CG +S+A+ +FD M + + ++W AMI+GY   G+  EA+ LF  M   
Sbjct: 339 STWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMERE 398

Query: 303 GVRPNNVTFVAVLSACA-----------HAGLVQEGHRV--------------FASMRQE 337
           G R N  +F + LS CA           H  LV+ G+                  S+ + 
Sbjct: 399 GGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEA 458

Query: 338 YGLL-----PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE--KPAPAVWTAMLGACKMH 390
             L        +     M+  + R G   EA +F + +  E  KP  A   A+L AC   
Sbjct: 459 NDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHT 518

Query: 391 KNFDLGVEVAEHLLS---VEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
              D G +    +     V P N  HY  + +   L GR   +E   N+M
Sbjct: 519 GLVDKGRQYFHTMTQDYGVRP-NSQHYACMVD---LLGRAGLLEEAHNLM 564



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 157/340 (46%), Gaps = 50/340 (14%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N  I    +    +++L  ++RM       S+ +++A+I          L R +    F
Sbjct: 62  WNVAISSYMRTGRCSEALRVFKRMP----RWSSVSYNAMISGYLRNGEFELARML----F 113

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
               + DL     ++  Y ++ N+  AR++F+RMP++ V +WN+++SGY QNG   +A  
Sbjct: 114 DEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARR 173

Query: 194 LFNLM---RDFGVNPDSTTCVC---VLAACAQLGDID----------LGRWVHEFIVGQG 237
           +F+ M    D   N   +  V    +  AC   G  +          LG +V +  + + 
Sbjct: 174 VFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEA 233

Query: 238 LDV-------NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
                     +VV   ++I  YA+ G + +AR++FD     +V  WTAM+SGY  +    
Sbjct: 234 RQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVE 293

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP--GVEHHV 348
           EA ELF RM       N V++ A+L     AG VQ G RV  + ++ + ++P   V    
Sbjct: 294 EARELFDRMPER----NEVSWNAML-----AGYVQ-GERVEMA-KELFDVMPCRNVSTWN 342

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPA--PAVWTAMLGA 386
            M+  + + G ++EA    K++  + P   P  W AM+  
Sbjct: 343 TMITGYAQCGKISEA----KNLFDKMPKRDPVSWAAMIAG 378



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 53/239 (22%)

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
           DSD+      ++ Y ++     A +VF RMP  S V++N+MISGY +NG  + A  LF+ 
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M      P+                 DL  W            NV     +I  Y R  N
Sbjct: 116 M------PER----------------DLVSW------------NV-----MIKGYVRNRN 136

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           + KARE+F+ M E +V +W  ++SGY  +G   +A  +F RM       N+V++ A+LSA
Sbjct: 137 LGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRM----PEKNDVSWNALLSA 192

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVI 371
                 ++E   +F S R+ + L+       C++  F +   + EA +F     V+DV+
Sbjct: 193 YVQNSKLEEACVLFGS-RENWALVS----WNCLLGGFVKKKKIVEARQFFDSMKVRDVV 246



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 92/206 (44%), Gaps = 10/206 (4%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H  L+  GY     +   LL + C  G I  A  +F  +   D   +NT+I   S+ 
Sbjct: 424 KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 483

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            F  ++L F+  M    + P + T  AV+ +C+H  +++ GR  + H     Y    + Q
Sbjct: 484 GFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ-YFHTMTQDYGVRPNSQ 542

Query: 145 --AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
             A +V+   ++  ++ A  +   MP +     W +++     +G  + A    + +  F
Sbjct: 543 HYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKI--F 600

Query: 202 GVNPDSTTCVCVL----AACAQLGDI 223
            + P+++    +L    A+  + GD+
Sbjct: 601 AMEPENSGMYVLLSNLYASSGRWGDV 626


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/561 (37%), Positives = 335/561 (59%), Gaps = 7/561 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H H+++ G+  SR +   L+ +    G +  A+ +F   P  + F +  ++   +  
Sbjct: 77  KRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHN 136

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               D+L     M +  ISP++ TF  ++ + A LS L+ GRA+H  +   G+ +D+ V 
Sbjct: 137 GHYMDALNLLEIMDLEGISPNSITFIELLGAVAALSWLDRGRALHRRIACCGFLADIFVA 196

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             L+N YAK  ++  A  VF+ +  +SV+AW ++++ Y  NGF ++A+ +F LM   GV 
Sbjct: 197 NCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVE 256

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P   T V V+  CA +    +GR VH  I  +  + NV +  +LINMY +C +  +AR++
Sbjct: 257 PTEVTFVTVVDVCADIAVFGIGREVHGVIDARS-EANVCVGNALINMYGKCASPDEARKV 315

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-----GVRPNNVTFVAVLSACA 319
           FD M   ++I W +MI+ YG +GYG +A+E++ RM+       G+  +++TF+ VL AC+
Sbjct: 316 FDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVLFACS 375

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           HAGLV++  ++++SM  +YG  P      C++DL GRAG L+EA +F+   +   P   +
Sbjct: 376 HAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINS-MPYHPDHTI 434

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           WT +LGAC  H + +     A+ ++++ P + G YV LSN+YALA R D +  +R +M Q
Sbjct: 435 WTILLGACITHADVERAARAADRIMALRPTDSGSYVALSNLYALAERWDDMARMRKLMDQ 494

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           +G+ K  G S++E+    + F  GD SHP   EIY+ L  + G  RE GYVP+ ++ +H 
Sbjct: 495 RGVFKMAGKSSIEIGGVLHEFIAGDTSHPRKREIYEELRRIEGVIRERGYVPDIKAVLHN 554

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
              E +E    +HSE+LA+AFG++ +  G  +RI+KNLR+C DCHSA K IS  + R+II
Sbjct: 555 AAREAKEKMCCFHSERLAIAFGMISSPGGTELRIMKNLRVCPDCHSATKIISKFSGRKII 614

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           VRD  RFH F+ GSCSC DYW
Sbjct: 615 VRDANRFHEFRNGSCSCEDYW 635



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 157/290 (54%), Gaps = 14/290 (4%)

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
           ++SPS    +  ++ C   + +  G+ +H H+ + G+ S  ++   LV  Y K  ++  A
Sbjct: 52  SVSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAA 111

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
           + VF   P ++V +W  M++ +  NG   +A+ L  +M   G++P+S T + +L A A L
Sbjct: 112 KSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAAL 171

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             +D GR +H  I   G   ++ +A  LINMYA+C +++ A  +F+ ++  +VIAWTA++
Sbjct: 172 SWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALV 231

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           + Y ++G+  +A+++F  M   GV P  VTFV V+  CA          VF   R+ +G+
Sbjct: 232 AAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIA-------VFGIGREVHGV 284

Query: 341 LPG-VEHHVC----MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           +    E +VC    +++++G+    +EA K V D +  K     W +M+ 
Sbjct: 285 IDARSEANVCVGNALINMYGKCASPDEARK-VFDAMQRKDI-ITWNSMIA 332



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 11/218 (5%)

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
            L+ D  V+P +      L  C     I  G+ +H  IV  G   +  L   L+ MY +C
Sbjct: 46  QLLEDRSVSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKC 105

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G++  A+ +F +    NV +WT M++ +  +G+  +A+ L   M   G+ PN++TF+ +L
Sbjct: 106 GSLQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELL 165

Query: 316 SACAHAGLVQEG---HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372
            A A    +  G   HR  A      G L  +    C+++++ +   L +A    + +  
Sbjct: 166 GAVAALSWLDRGRALHRRIACC----GFLADIFVANCLINMYAKCRSLADACSVFESLTS 221

Query: 373 EKPAPAVWTAMLGACKMHKNFD--LGVEVAEHLLSVEP 408
              +   WTA++ A  ++  F   L V +   L  VEP
Sbjct: 222 R--SVIAWTALVAAYALNGFFRDALKVFLLMTLDGVEP 257


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/536 (39%), Positives = 328/536 (61%), Gaps = 7/536 (1%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN-FSTDSLLFYRRMIVSNISP 104
           L S+    G +  A R+F  +P  +   + T++   + A+    ++L F   M    ++P
Sbjct: 110 LASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAP 169

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           + YTFS+V+ +C    +L    AVH     +G DSD+ V+++L++ Y K  ++D  R+VF
Sbjct: 170 NAYTFSSVLGACTTPGMLT---AVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVF 226

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           D M  + +V WNS+I+G+ Q+G    AI LF  M+D G + +  T   VL AC  +  ++
Sbjct: 227 DEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLE 286

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
            GR VH  ++    D +++L  +L++MY +CG++  A  +F  M + +VI+W+ M+SG  
Sbjct: 287 AGRQVHAHVLK--YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLA 344

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
            +G   EA+ +F  M++ GV PN+VT V VL AC+HAGLV++G   F SM++ +G+ P  
Sbjct: 345 QNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPER 404

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           EHH CMVDL GRAG L+EA +F+  +  E P   +W  +LGAC+MHKN  L    A  +L
Sbjct: 405 EHHNCMVDLLGRAGKLDEAVEFIHGMSLE-PDSVIWRTLLGACRMHKNASLAAYAAREIL 463

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
            +EP++ G  V+LSN YA   +    E     M  +G++K  G S +E++++ ++F  GD
Sbjct: 464 KLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGD 523

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
            SHP ++ I Q L+ L+GR +  GYVP++E  + +L  E++E  L+YHSEK+A+ FG M 
Sbjct: 524 LSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIVFGTMH 583

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
              G  IRI+KNLR+C DCH+  K +S +  R I++RD +RFHHF+ G+CSC DYW
Sbjct: 584 AVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 159/327 (48%), Gaps = 27/327 (8%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSG---YDS--DLHVQAALVNFYAKSNNVDVARK 162
           + + ++K C      + GR +H HV   G   +D    L V  +L + YAK   +D A +
Sbjct: 66  SLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALR 125

Query: 163 VFDRMPDKSVVAWNSMISGY-EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           +FD MP ++VV W ++++     +G  +EA+     MR  GV P++ T   VL AC   G
Sbjct: 126 MFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPG 185

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            +     VH   V  GLD +V + +SLI+ Y + G++   R +FD M   +++ W ++I+
Sbjct: 186 MLTA---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIA 242

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGL 340
           G+   G G  A+ELF RM+  G   N  T  +VL AC    +++ G +V A  ++ +  L
Sbjct: 243 GFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLKYDRDL 302

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAVWTAMLGACKMHKNFDL 395
           +     H  ++D++ + G L +A         +DVI        W+ M+     +     
Sbjct: 303 IL----HNALLDMYCKCGSLEDADALFHRMPQRDVIS-------WSTMVSGLAQNGKSVE 351

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYA 422
            + V + L+  +   P H  M+  ++A
Sbjct: 352 ALRVFD-LMKSQGVAPNHVTMVGVLFA 377



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 147/285 (51%), Gaps = 8/285 (2%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P++  + ++L A      L  VHA  + AG      + + L+      G +   +R+F  
Sbjct: 169 PNAYTFSSVLGACTTPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDE 228

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           + + D  ++N++I   +++     ++  + RM  +  S +  T ++V+++C  + +L  G
Sbjct: 229 MVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAG 288

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           R VH HV    YD DL +  AL++ Y K  +++ A  +F RMP + V++W++M+SG  QN
Sbjct: 289 RQVHAHVL--KYDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQN 346

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ---GLDVNV 242
           G + EA+ +F+LM+  GV P+  T V VL AC+  G ++ G W H F   +   G+    
Sbjct: 347 GKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDG-W-HYFRSMKRLFGIQPER 404

Query: 243 VLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
                ++++  R G + +A E    MS E + + W  ++    MH
Sbjct: 405 EHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMH 449


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/551 (38%), Positives = 329/551 (59%), Gaps = 6/551 (1%)

Query: 30  HLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTD 89
           HL   G+     ++  L+++      +  A ++F  +P  +   + T+I   SK      
Sbjct: 86  HLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQK 145

Query: 90  SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
           +L     M+  N+ P+ YT+S+V++SC  +S +   R +HC +   G +SD+ V++AL++
Sbjct: 146 ALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALID 202

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            +AK    + A  VFD M     + WNS+I G+ QN  +  A+ LF  M+  G   +  T
Sbjct: 203 VFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQAT 262

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
              VL AC  L  ++LG   H  IV    D +++L  +L++MY +CG++  A  +F+ M 
Sbjct: 263 LTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMK 320

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
           E +VI W+ MISG   +GY  EA++LF RM++ G +PN +T V VL AC+HAGL+++G  
Sbjct: 321 ERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWY 380

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
            F SM++ YG+ P  EH+ CM+DL G+AG L++A K + ++  E P    W  +LGAC++
Sbjct: 381 YFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECE-PDAVTWRTLLGACRV 439

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
            +N  L    A+ +++++PE+ G Y +LSNIYA + + D VE +R  M  +G+KK  G S
Sbjct: 440 QRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCS 499

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
            +EV+++ + F +GD SHP   E+ + L++L+ R    GYVPE+   + +LE E+ E SL
Sbjct: 500 WIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSL 559

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
           R+HSEKLALAFGLM       IRI KNLR+C DCH   K  S    R I++RD +R+HHF
Sbjct: 560 RHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHF 619

Query: 570 KRGSCSCLDYW 580
           + G CSC DYW
Sbjct: 620 QDGKCSCGDYW 630



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 144/287 (50%), Gaps = 24/287 (8%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T+S +IK C     ++ G  +  H++ +G+   + +   L+N Y K N ++ A ++FD+M
Sbjct: 63  TYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQM 122

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
           P ++V++W +MIS Y +    ++A+ L  LM    V P+  T   VL +C  + D+   R
Sbjct: 123 PQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---R 179

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +H  I+ +GL+ +V + ++LI+++A+ G    A  +FD M   + I W ++I G+  + 
Sbjct: 180 MLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNS 239

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGV 344
               A+ELF RM+  G      T  +VL AC    L++ G   H       Q+  L    
Sbjct: 240 RSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLIL---- 295

Query: 345 EHHVCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAVWTAMLGA 386
             +  +VD++ + G L +A +       +DVI        W+ M+  
Sbjct: 296 --NNALVDMYCKCGSLEDALRVFNQMKERDVI-------TWSTMISG 333



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 149/283 (52%), Gaps = 6/283 (2%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           N +P+   Y ++L++   +  ++ +H  +I  G      + + L+ +    G    A  +
Sbjct: 157 NVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSV 216

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  + + D+ ++N++I   ++ + S  +L  ++RM  +       T ++V+++C  L++L
Sbjct: 217 FDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALL 276

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            LG   H H+    YD DL +  ALV+ Y K  +++ A +VF++M ++ V+ W++MISG 
Sbjct: 277 ELGMQAHVHIV--KYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGL 334

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ--GLDV 240
            QNG+++EA+ LF  M+  G  P+  T V VL AC+  G ++ G W +   + +  G+D 
Sbjct: 335 AQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG-WYYFRSMKKLYGIDP 393

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISG 282
                  +I++  + G +  A ++ + M  E + + W  ++  
Sbjct: 394 VREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 436



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 24/222 (10%)

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+   + ++  G+  DS T   ++  C     +  G  +   +   G    + L   LIN
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MY +   ++ A ++FD M + NVI+WT MIS Y       +A+EL   M    VRPN  T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 311 FVAVLSAC--------AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           + +VL +C         H G+++EG      +R              ++D+F + G   +
Sbjct: 165 YSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRS------------ALIDVFAKLGEPED 212

Query: 363 AYK-FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
           A   F + V G+     VW +++G    +   D+ +E+ + +
Sbjct: 213 ALSVFDEMVTGD---AIVWNSIIGGFAQNSRSDVALELFKRM 251


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/556 (37%), Positives = 325/556 (58%), Gaps = 35/556 (6%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH  ++  G+G    +   L+ +    G I  A  +F  +   D   +  +I    +A  
Sbjct: 154 VHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAER 213

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
              +L+ +R+M          T  +V  +   L     GR                    
Sbjct: 214 PLKALMLFRKMQEEGFLGDEITAISVASAVGQLGD---GRMA------------------ 252

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
                     +  AR VFDRM +++ ++WNSM+SGY QNG   +A+ LFN M+    +P+
Sbjct: 253 ----------ISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPN 302

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T + +++AC+ LG   LGR +H F++   +D++  L  ++++MY +CG++  A E+F+
Sbjct: 303 PVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFN 362

Query: 267 --MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
              + E +V +W  +ISGYG+HG+G EA+ELF RM+  GV PN++TF ++LSAC+HAGL+
Sbjct: 363 NCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLI 422

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG + FA M +   + P ++H+ CMVD+ GRAG LNEA++ +K  I  +P+  VW A+L
Sbjct: 423 DEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKK-IPSRPSDEVWGALL 480

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            AC++H N +LG   A +L  +EPE+ G+YV++SNIYA + +   VE+VR  M  +GLKK
Sbjct: 481 LACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKK 540

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
              +S +E   + + F   D+S P   E+Y+ ++ L    +  GYVP+    +H++E E+
Sbjct: 541 PAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPED 600

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E+ L YHSEKLA+AFG+M+   GM I++ KNLR+C DCH A KFIS    R+IIVRD  
Sbjct: 601 KEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGN 660

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF+ G CSC DYW
Sbjct: 661 RFHHFQGGRCSCGDYW 676



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 202/425 (47%), Gaps = 55/425 (12%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYG-RSRSMLTKLLSLVCDAGFITYAQRIF------ 63
           Y+ +L+    L  L+ +H+ L   G+   +   L +L+ L    G +  A+ +F      
Sbjct: 28  YDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHH 87

Query: 64  --FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
                 +P+SFL NT++   + A  S +++  Y  M    +  +N+T+  V+K CA    
Sbjct: 88  HHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELG 147

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
              G  VH  V  +G+ SDL V+AALV+ YAK   +  A +VFDRM  + VV W +MI+ 
Sbjct: 148 AVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITL 207

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           YEQ     +A+ LF  M++ G   D  T + V +A  QLGD   GR              
Sbjct: 208 YEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGD---GRMA------------ 252

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
                           +S+AR +FD M E N I+W +M+SGY  +G  T+A+ LF++M+A
Sbjct: 253 ----------------ISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQA 296

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHR-----VFASMRQEYGLLPGVEHHVCMVDLFGR 356
               PN VT + ++SAC++ G    G +     + + M  +  L   +      +D++ +
Sbjct: 297 SECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAI------MDMYMK 350

Query: 357 AGLLNEAYKFVKDV-IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SVEPENPGH 413
            G L+ A +   +  +GE+   + W  ++    +H +    +E+   +    VEP +   
Sbjct: 351 CGDLDTAVEMFNNCELGERDVSS-WNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITF 409

Query: 414 YVMLS 418
             +LS
Sbjct: 410 TSILS 414


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/587 (36%), Positives = 343/587 (58%), Gaps = 26/587 (4%)

Query: 20   RLKPLQQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
            RL+  +++H + +  G     S + T L+ + C+       + +F  +      ++N L+
Sbjct: 549  RLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALL 608

Query: 79   IRNSKANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
               ++  F   +L  +  MI  S   P+  TF++V+ +C    + +    +H ++   G+
Sbjct: 609  AGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGF 668

Query: 138  DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
              D +VQ AL++ Y++   V++++ +F RM  + +V+WN+MI+G    G   +A+ L + 
Sbjct: 669  GKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHE 728

Query: 198  MR----------------DFGV--NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
            M+                D GV   P+S T + VL  CA L  +  G+ +H + V Q L 
Sbjct: 729  MQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLA 788

Query: 240  VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            ++V + ++L++MYA+CG ++ A  +FD M   NVI W  +I  YGMHG G EA+ELF  M
Sbjct: 789  MDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIM 848

Query: 300  RAHG------VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
             A G      +RPN VT++A+ +AC+H+G+V EG  +F +M+  +G+ P  +H+ C+VDL
Sbjct: 849  TAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDL 908

Query: 354  FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
             GR+G + EAY+ +  +         W+++LGAC++H++ + G   A+HL  +EP    H
Sbjct: 909  LGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASH 968

Query: 414  YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
            YV++SNIY+ AG  D+   VR  M + G++K  G S +E   + + F  GD SHP + E+
Sbjct: 969  YVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKEL 1028

Query: 474  YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
            ++YL+ L  R R+ GYVP+    +H +++EE+E  L  HSE+LA+AFGL+ T PG TIR+
Sbjct: 1029 HEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLNTPPGTTIRV 1088

Query: 534  VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             KNLR+C DCH A K IS   +REII+RD  RFHHF  G+CSC DYW
Sbjct: 1089 AKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 198/396 (50%), Gaps = 18/396 (4%)

Query: 10  AYEAILKAGPRLKPL---QQVHAHLIVAGYG--RSRSMLTKLLSLVCDAGFITYAQRIFF 64
           A+ A+LKA   +  L   +Q+HAH+   G+    S ++   L+++    G +T A+++F 
Sbjct: 332 AFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFD 391

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL-SILN 123
            IP  D   +N++I    +      SL  +R M+  N+ P+++T  +V  +C+H+   + 
Sbjct: 392 DIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVR 451

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
           LG+ VH +   +G D   +   ALV  YA+   V+ A+ +F     K +V+WN++IS   
Sbjct: 452 LGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLS 510

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG-LDVNV 242
           QN   +EA+    LM   GV PD  T   VL AC+QL  + +GR +H + +  G L  N 
Sbjct: 511 QNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENS 570

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            + T+L++MY  C    K R +FD +    V  W A+++GY  + +  +A+ LF  M + 
Sbjct: 571 FVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISE 630

Query: 303 G-VRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAGLL 360
               PN  TF +VL AC    +  +   +   + ++ +G    V++   ++D++ R G +
Sbjct: 631 SEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQN--ALMDMYSRMGRV 688

Query: 361 NEAYKFVKDVIGE--KPAPAVWTAMLGACKMHKNFD 394
               +  K + G   K     W  M+  C +   +D
Sbjct: 689 ----EISKTIFGRMNKRDIVSWNTMITGCIVCGRYD 720



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 162/322 (50%), Gaps = 8/322 (2%)

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
           SP  ++   L+   + ++   D++  Y  M+ +   P N+ F AV+K+ A +  L LG+ 
Sbjct: 294 SPSQWI--DLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQ 351

Query: 128 VHCHVFVSGY--DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           +H HVF  G+   S + V  +LVN Y K  ++  AR+VFD +PD+  V+WNSMI+   + 
Sbjct: 352 IHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRF 411

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL-GDIDLGRWVHEFIVGQGLDVNVVL 244
              + ++ LF LM    V+P S T V V  AC+ + G + LG+ VH + +  G D+    
Sbjct: 412 EEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYT 470

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             +L+ MYAR G V+ A+ +F +    ++++W  +IS    +    EA+   + M   GV
Sbjct: 471 NNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGV 530

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
           RP+ VT  +VL AC+    ++ G  +     +   L+        +VD++       +  
Sbjct: 531 RPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGR 590

Query: 365 KFVKDVIGEKPAPAVWTAMLGA 386
                V+  +   AVW A+L  
Sbjct: 591 LVFDGVV--RRTVAVWNALLAG 610



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 127/270 (47%), Gaps = 9/270 (3%)

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           +S   W  ++     +   ++AI  +  M      PD+     VL A A + D+ LG+ +
Sbjct: 293 RSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQI 352

Query: 230 HE--FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
           H   F  G     +V +A SL+NMY +CG+++ AR++FD + + + ++W +MI+      
Sbjct: 353 HAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFE 412

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA-GLVQEGHRVFASMRQEYGLLPGVEH 346
               ++ LF  M +  V P + T V+V  AC+H  G V+ G +V A   +   L     +
Sbjct: 413 EWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNN 472

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406
              +V ++ R G +N+A        G+      W  ++ +   +  F+  +    +L+ V
Sbjct: 473 --ALVTMYARLGRVNDAKALFGVFDGKDLVS--WNTVISSLSQNDRFEEALMYV-YLMIV 527

Query: 407 EPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
           +   P   V L+++     +++R+ + R I
Sbjct: 528 DGVRPDG-VTLASVLPACSQLERLRIGREI 556


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/612 (35%), Positives = 343/612 (56%), Gaps = 43/612 (7%)

Query: 10  AYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           ++  ILKA  ++  L    ++H             + T L+ +    G I YA+ +F  +
Sbjct: 116 SFPPILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEM 175

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
              D   +NT+I R  +     ++   +  M  SN+ P       ++ +C     +   R
Sbjct: 176 SQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNR 235

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYA-------------------------------KSN 155
           A++  +  +    D H+  ALV  YA                               K+ 
Sbjct: 236 AIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAG 295

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
            +D AR +FD+   K +V W +MIS Y ++   +EA+ +F  M   G+ PD  T + V++
Sbjct: 296 RLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVIS 355

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           AC  LG +D  +WVH +    GL+  + +  +LINMYA+CG +  AR++F+ M   NV++
Sbjct: 356 ACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVS 415

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           W++MI+ + MHG  ++++ LF +M+   V PN VTFV VL  C+H+GLV+EG ++FASM 
Sbjct: 416 WSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMT 475

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
            EY + P +EH+ CMVDLFGRA LL EA + ++  +   P   +W +++ AC++H   +L
Sbjct: 476 DEYNITPKIEHYGCMVDLFGRANLLREALEVIES-MPMAPNVVIWGSLMSACRVHGELEL 534

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
           G   A+ +L +EP++ G  V++SNIYA   R D V ++R IM +K + K  G S ++++ 
Sbjct: 535 GELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNG 594

Query: 456 KNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEK 515
           K++ F +GDK H  +NEIY  L E++ + + AGYVP+  S + ++EEEE++  + +HSEK
Sbjct: 595 KSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEK 654

Query: 516 LALAFGLM-------RTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHH 568
           LAL FGLM       + S G+ IRIVKNLR+C DCH+  K +S     EIIVRDR RFH 
Sbjct: 655 LALCFGLMNKEKEEEKGSCGV-IRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHR 713

Query: 569 FKRGSCSCLDYW 580
           +K G CSC DYW
Sbjct: 714 YKDGLCSCRDYW 725



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 194/408 (47%), Gaps = 47/408 (11%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI-PSPDSFLFNTLII 79
           L  ++Q+HAH++        +     LS    +  ++YA  +F  I P P+S +FN+L+ 
Sbjct: 28  LNHIKQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYALNLFSSISPLPESIVFNSLLR 87

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             S++     ++LFY+R+          +F  ++K+ + +S L  G  +H   F     S
Sbjct: 88  DLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFAFKIATLS 147

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D  V+  L++ YA    ++ AR VFD M  + VV WN+MI  Y + G   EA  LF  M+
Sbjct: 148 DPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMK 207

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA------ 253
           D  V PD      +++AC + G++   R +++F++   + ++  L T+L+ MYA      
Sbjct: 208 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMD 267

Query: 254 -------------------------RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
                                    + G +  AR IFD     +++ WT MIS Y    +
Sbjct: 268 MAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDH 327

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             EA+ +F  M   G++P+ VT ++V+SAC + G + +   V       Y  L G+E  +
Sbjct: 328 PQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWV-----HRYTHLNGLESVL 382

Query: 349 ----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMH 390
                +++++ + G L+ A    +DV  + P   V  W++M+ A  MH
Sbjct: 383 PIDNALINMYAKCGGLDAA----RDVFEKMPTRNVVSWSSMINAFAMH 426


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/578 (36%), Positives = 337/578 (58%), Gaps = 5/578 (0%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    Y   + A  + K L+   +VHAHL  + +     +   L+ L C  G +  A+++
Sbjct: 49  PTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKV 108

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   D   + +LI   ++ +   +++     M+     P+ +TF++++K+    +  
Sbjct: 109 FDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADS 168

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            +GR +H       +  D++V +AL++ YA+   +D+A  VFD++  K+ V+WN++ISG+
Sbjct: 169 GIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            + G  + A+  F  M   G      T   V ++ A+LG ++ G+WVH  ++     +  
Sbjct: 229 ARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTA 288

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
               +L++MYA+ G++  AR++FD + + +++ W  M++ +  +G G EAV  F  MR  
Sbjct: 289 FAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+  N VTF+ +L+AC+H GLV+EG R F  M +EY L P ++H V +V L GRAGLLN 
Sbjct: 349 GIYLNQVTFLCILTACSHGGLVKEGKRYF-EMMKEYDLEPEIDHFVTVVALLGRAGLLNF 407

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A  F+  +  E P  AVW A+L AC+MHKN  +G   A+H+  ++P++ G  V+L NIYA
Sbjct: 408 ALVFIFKMPIE-PTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYA 466

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             G+ D    VR IM   G+KK    S VE++   ++F   D +HP   EIY+   ++  
Sbjct: 467 STGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISK 526

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           + R+ GYVP+ +  +  ++++ERE +L+YHSEKLALAF L+    G TIRI+KN+R+C D
Sbjct: 527 KIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGD 586

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CHSA K+IS    REI+VRD  RFHHF  GSCSC DYW
Sbjct: 587 CHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 151/305 (49%), Gaps = 12/305 (3%)

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           ++P+   +   I +CA    L   R VH H+  S +  D  +  +L++ Y K  +V  AR
Sbjct: 47  LAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEAR 106

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           KVFD M  K +V+W S+I+GY QN   +EAIGL   M      P+  T   +L A     
Sbjct: 107 KVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHA 166

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           D  +GR +H   V      +V + ++L++MYARCG +  A  +FD +   N ++W A+IS
Sbjct: 167 DSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALIS 226

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM---RQEY 338
           G+   G G  A+  F  M  +G    + T+ +V S+ A  G +++G  V A M   RQ+ 
Sbjct: 227 GFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKM 286

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
               G      ++D++ ++G + +A K V D + +K     W  ML A      + LG E
Sbjct: 287 TAFAG----NTLLDMYAKSGSMIDARK-VFDRVDDKDL-VTWNTMLTA---FAQYGLGKE 337

Query: 399 VAEHL 403
              H 
Sbjct: 338 AVSHF 342


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/563 (39%), Positives = 333/563 (59%), Gaps = 4/563 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP-DSFLFNTLII 79
           ++P +Q+HA L+V+G G    + T+L+ L    G ++ A+R+F  +P+  + FL+N LI 
Sbjct: 84  VRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNVLIR 143

Query: 80  RNSKANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
             ++      ++  YR M+   ++ P N+T+  V+K+CA L  L+ GR VH  V  + + 
Sbjct: 144 AYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRTNWA 203

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
           +D+ V   L++ YAK   +D A  VF+    +    WNSMI+   QNG   EA+ L   M
Sbjct: 204 TDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNM 263

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
              G+ P   T V  ++A A    +  GR +H +   +G      L TSL++MYA+ G V
Sbjct: 264 AAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWV 323

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSA 317
             A  +F+ +    +I+W AMI G+GMHG+   A ELF RMR+   V P+++TFV VLSA
Sbjct: 324 MVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSA 383

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           C H G+VQE   VF  M   Y + P V+H+ C+VD+ G +G   EA   +K ++  KP  
Sbjct: 384 CNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGML-VKPDS 442

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
            +W A+L  CK+HKN +L     + L+ +EPE+ G+YV+LSNIYA +G+ +    VR +M
Sbjct: 443 GIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAESGKWEEAARVRKLM 502

Query: 438 IQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM 497
             +GLKK +  S +E+  K + F +GD SHP +++IY+ L+ L G   + GYVP++    
Sbjct: 503 TNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGLISQTGYVPDTTPVF 562

Query: 498 HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNRE 557
           H +E++E+   +  HSE+LA+AFGL+ T P   + + KNLR+C DCH  IK IS    RE
Sbjct: 563 HNVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLRVCEDCHVVIKLISQIEQRE 622

Query: 558 IIVRDRLRFHHFKRGSCSCLDYW 580
           II+RD  R+HHF  G CSC D+W
Sbjct: 623 IIIRDVNRYHHFVNGECSCKDHW 645



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 181/359 (50%), Gaps = 11/359 (3%)

Query: 103 SPSNYT-FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           SP N++ ++ +++SC     +  GR +H  + VSG   D  +   LV+ YA   +V +AR
Sbjct: 64  SPYNHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLAR 123

Query: 162 KVFDRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-VNPDSTTCVCVLAACAQ 219
           +VFD MP++ +V  WN +I  Y ++G  + AI L+  M  +G + PD+ T   VL ACA 
Sbjct: 124 RVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAA 183

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           L D+  GR VH+ ++      +V + T LI+MYA+CG + +A  +F+  +  +   W +M
Sbjct: 184 LLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSM 243

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEY 338
           I+  G +G   EA+ L   M A G+ P   T V+ +SA A A  +  G  +     R+ +
Sbjct: 244 IAACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGF 303

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
           G    ++    ++D++ ++G +  A+   + ++  +     W AM+    MH + D   E
Sbjct: 304 GSQDKLK--TSLLDMYAKSGWVMVAHVLFEQLLHRELIS--WNAMICGFGMHGHADHAFE 359

Query: 399 VAEHLLSVEPENPGHYVMLSNIYAL--AGRMDRVEVVRNIMIQ-KGLKKHVGYSTVEVD 454
           +   + S     P H   +  + A    G +   + V ++M+    +K  V + T  VD
Sbjct: 360 LFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVD 418


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/573 (38%), Positives = 350/573 (61%), Gaps = 7/573 (1%)

Query: 13  AILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           +IL   P+L  +     +H ++I  G      +   L+++    G +  A++ F  +   
Sbjct: 321 SILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFIT 380

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   +N++I    + +    +  F+ +M ++   P   T  ++    A        R+VH
Sbjct: 381 DVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVH 440

Query: 130 CHVFVSGY-DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
             +   G+   D+ +  A+V+ YAK   +D A KVF+ +  K V++WN++I+GY QNG A
Sbjct: 441 GFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLA 500

Query: 189 KEAIGLFNLMRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            EAI ++ +M +   + P+  T V +L A A +G +  G  +H  ++   L ++V +AT 
Sbjct: 501 SEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATC 560

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           LI++Y +CG +  A  +F  + + + + W A+IS +G+HG+  + ++LF  M   GV+P+
Sbjct: 561 LIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPD 620

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           +VTFV++LSAC+H+G V+EG   F  M QEYG+ P ++H+ CMVDL GRAG L  AY F+
Sbjct: 621 HVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFI 679

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           KD +  +P  ++W A+LGAC++H N +LG   ++ L  V+ +N G+YV+LSNIYA  G+ 
Sbjct: 680 KD-MPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKW 738

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           + V+ VR++  ++GLKK  G+ST+EV++K  +F  G++SHP   EIY+ L  L  + +  
Sbjct: 739 EGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSL 798

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           GY+P+    + ++EE+E+E+ L  HSE+LA+AFG++ T P   IRI KNLR+C DCH+A 
Sbjct: 799 GYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNAT 858

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KFIS  T REI+VRD  RFHHFK G CSC DYW
Sbjct: 859 KFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 228/439 (51%), Gaps = 24/439 (5%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSK 83
           +HA L+VAG  +S  + T+L++L  + G ++ ++  F  IP  D + +N++I   + N  
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHN-- 195

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
            +F      FY+ ++VS I P  YTF  V+K+C  L     GR +HC  F  G+  ++ V
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFV 252

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
            A+L++ Y++     +AR +FD MP + + +WN+MISG  QNG A +A+ + + MR  G+
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
             +  T V +L  C QLGDI     +H +++  GL+ ++ ++ +LINMYA+ GN+  AR+
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
            F  M   +V++W ++I+ Y  +     A   F +M+ +G +P+ +T V++ S  A +  
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRD 432

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK-----FVKDVIGEKPAPA 378
            +    V   + +   L+  V     +VD++ + GLL+ A+K      VKDVI       
Sbjct: 433 CKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVIS------ 486

Query: 379 VWTAMLGACKMHKNFDLGVEV---AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
            W  ++     +      +EV    E    + P N G +V +   YA  G + +   +  
Sbjct: 487 -WNTLITGYAQNGLASEAIEVYKMMEECKEIIP-NQGTWVSILPAYAHVGALQQGMRIHG 544

Query: 436 IMIQKGLKKHVGYSTVEVD 454
            +I+  L   V  +T  +D
Sbjct: 545 RVIKTNLHLDVFVATCLID 563



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 230/465 (49%), Gaps = 17/465 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           +P    +  +LKA   L   +++H      G+  +  +   L+ +    GF   A+ +F 
Sbjct: 215 RPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFD 274

Query: 65  CIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            +P  D   +N +I   I+N  A  + D L     M +  I  +  T  +++  C  L  
Sbjct: 275 DMPFRDMGSWNAMISGLIQNGNAAQALDVL---DEMRLEGIKMNFVTVVSILPVCPQLGD 331

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           ++    +H +V   G + DL V  AL+N YAK  N++ ARK F +M    VV+WNS+I+ 
Sbjct: 332 ISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAA 391

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG-LDV 240
           YEQN     A G F  M+  G  PD  T V + +  AQ  D    R VH FI+ +G L  
Sbjct: 392 YEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLME 451

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM- 299
           +VV+  ++++MYA+ G +  A ++F+++   +VI+W  +I+GY  +G  +EA+E++  M 
Sbjct: 452 DVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMME 511

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
               + PN  T+V++L A AH G +Q+G R+   + +   L   V    C++D++G+ G 
Sbjct: 512 ECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKT-NLHLDVFVATCLIDVYGKCGR 570

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L +A      V  E  +   W A++    +H + +  +++   +L  E   P H   +S 
Sbjct: 571 LVDAMSLFYQVPQE--SSVTWNAIISCHGIHGHAEKTLKLFGEMLD-EGVKPDHVTFVSL 627

Query: 420 IYAL--AGRMDRVEVVRNIMIQKGLK---KHVGYSTVEVDQKNYL 459
           + A   +G ++  +    +M + G+K   KH G     + +  YL
Sbjct: 628 LSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYL 672



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 25/273 (9%)

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
             + +H  + V+G    + +   LVN YA   +V ++R  FD++P K V  WNSMIS Y 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYV 193

Query: 184 QNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            NG   EAIG F  L+    + PD  T   VL AC  L D   GR +H +    G   NV
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNV 250

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +A SLI+MY+R G    AR +FD M   ++ +W AMISG   +G   +A+++   MR  
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAG 358
           G++ N VT V++L  C   G +       A +   Y +  G+E  +     +++++ + G
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDIST-----AMLIHLYVIKHGLEFDLFVSNALINMYAKFG 365

Query: 359 LLNEAYK-----FVKDVIGEKPAPAVWTAMLGA 386
            L +A K     F+ DV+        W +++ A
Sbjct: 366 NLEDARKAFQQMFITDVVS-------WNSIIAA 391


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/542 (38%), Positives = 325/542 (59%), Gaps = 6/542 (1%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFN---TLIIRNSKANFSTDSLLFYRRMI 98
           ++   +++  +AG +  A+R+F  +   D   +N   TL ++N   NF  +++  + R+ 
Sbjct: 243 VMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNE--NFG-EAVRLFGRLQ 299

Query: 99  VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158
              +  ++ TF  ++     L+ L  G+ +H  V  +GYD D  V  AL++ Y +     
Sbjct: 300 QDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPG 359

Query: 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
            A K+F  M  K V+ W  M   Y QNGF KEA+ LF  M+  G  P S T V VL  CA
Sbjct: 360 QAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCA 419

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
            L  +  GR +H  I+     + +V+ T+LINMY +CG +++A  +F+ M++ +++ W +
Sbjct: 420 HLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNS 479

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           M+  Y  HGY  E ++LF++M+  GV+ + V+FV+VLSA +H+G V +G++ F +M Q++
Sbjct: 480 MLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDF 539

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
            + P  E + C+VDL GRAG + EA   V  + G  P   +W  +LGAC+ H   D    
Sbjct: 540 SITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKA 599

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458
            AE +L  +P + G YV+LSN+YA AG  D V  +R +M  +G+KK  G S++E+  + +
Sbjct: 600 AAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVH 659

Query: 459 LFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLAL 518
            F  GD+SHP  + IY  LD L    R AGY+P+++  +H++E+E +E  L YHSE+LA+
Sbjct: 660 EFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAI 719

Query: 519 AFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLD 578
           AFGL+ T PG  +R++KNLR+C DCH+A K+IS    REI+VRD  RFH+FK G CSC D
Sbjct: 720 AFGLISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKD 779

Query: 579 YW 580
           YW
Sbjct: 780 YW 781



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 190/392 (48%), Gaps = 6/392 (1%)

Query: 6   PHSPAYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    Y AIL A      LK   ++H  ++  G+     + T L+++    G +  A   
Sbjct: 103 PTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDS 162

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   D   +  +I    + +    +   YRRM +  + P+  T   V  +    + L
Sbjct: 163 FKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYL 222

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           + G+ V+  V     +SD+ V  + VN +  +  +  AR++F+ M D+ VV WN +I+ Y
Sbjct: 223 SEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLY 282

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            QN    EA+ LF  ++  GV  +  T V +L     L  +  G+ +HE +   G D + 
Sbjct: 283 VQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDA 342

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           V+AT+L+++Y RC    +A +IF  M   +VI WT M   Y  +G+  EA++LF  M+  
Sbjct: 343 VVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLE 402

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G RP + T VAVL  CAH   +Q+G ++ + + +    +  V     +++++G+ G + E
Sbjct: 403 GRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVV-ETALINMYGKCGKMAE 461

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
           A    + +   K    VW +MLGA   H  +D
Sbjct: 462 AMSVFEKM--AKRDILVWNSMLGAYAQHGYYD 491



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 173/354 (48%), Gaps = 16/354 (4%)

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P    F A+++ C+    ++ GR VH HV   G++ +  V   L+  YA+  +V  A++V
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F+ +  K V AW  MI  Y Q G    A+G+F  M++  V P   T V +L ACA    +
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 121

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
             G  +H  I+ QG + +V + T+LINMY +CG+V  A + F  +   +V++WTAMI+  
Sbjct: 122 KDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAAC 181

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
             H     A  L+ RM+  GV PN +T   V +A      + EG  V       YGL+  
Sbjct: 182 VQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFV-------YGLVSS 234

Query: 344 --VEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
             +E  V      V++FG AGLL +A +  +D++        W  ++     ++NF   V
Sbjct: 235 GVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRD--VVTWNIVITLYVQNENFGEAV 292

Query: 398 EVAEHLLSVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
            +   L     + N   +V++ N+Y     + + +V+  ++ + G  +    +T
Sbjct: 293 RLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVAT 346



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 185/383 (48%), Gaps = 8/383 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P +  + A+L+     K +   ++VH H+   G+ ++  +   L+ +    G +  AQ+
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 62  IFFCIPSPDSFLFNTLI-IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           +F  +   D F +  +I I   + ++     +FY+ M   ++ P+  T+ A++ +CA   
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQ-MQEEDVMPTKVTYVAILNACASTE 119

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L  G  +H  +   G++ D+ V  AL+N Y K  +V  A   F R+  + VV+W +MI+
Sbjct: 120 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 179

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
              Q+     A  L+  M+  GV P+  T   V  A      +  G++V+  +    ++ 
Sbjct: 180 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMES 239

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +V +  S +NM+   G +  AR +F+ M + +V+ W  +I+ Y  +    EAV LF R++
Sbjct: 240 DVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQ 299

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             GV+ N++TFV +L+       + +G +V   + +E G          ++ L+GR    
Sbjct: 300 QDGVKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDAVVATALMSLYGRCEAP 358

Query: 361 NEAYKFVKDVIGEKPAPAVWTAM 383
            +A+K   D +G K     WT M
Sbjct: 359 GQAWKIFVD-MGSKDV-ITWTVM 379



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           ++ ++P S    A+L     L  LQ   Q+H+H+I   +     + T L+++    G + 
Sbjct: 401 LEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMA 460

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A  +F  +   D  ++N+++   ++  +  ++L  + +M +  +     +F +V+ + +
Sbjct: 461 EAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALS 520

Query: 118 H 118
           H
Sbjct: 521 H 521


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/540 (39%), Positives = 335/540 (62%), Gaps = 6/540 (1%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI- 102
           T LL +    G + YA R+F  +   +   ++ L+          ++   ++ M+   + 
Sbjct: 272 TALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLC 331

Query: 103 --SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
             SP+  + ++ +++CA+LS L LG+ +H  +  SG  +DL    +L++ YAK+  +D A
Sbjct: 332 FLSPT--SVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQA 389

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
             +FD+M  K  V++++++SGY QNG A EA  +F  M+   V PD  T V ++ AC+ L
Sbjct: 390 TTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHL 449

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             +  G+  H  ++ +G+     +  +LI+MYA+CG +  +R+IFD+M   ++++W  MI
Sbjct: 450 AALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMI 509

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GYG+HG G EA  LF  M+     P++VTF+ ++SAC+H+GLV EG R F  M  +YG+
Sbjct: 510 AGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGI 569

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P +EH++ MVDL  R G L+EAY+F++  +  K    VW A+LGAC++HKN DLG +V+
Sbjct: 570 TPRMEHYIGMVDLLARGGFLDEAYQFIQG-MPLKADVRVWGALLGACRVHKNIDLGKQVS 628

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
             +  + PE  G++V+LSNI++ AGR D    VR I  ++G KK  G S +E++   + F
Sbjct: 629 SMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAF 688

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
             GD+SH  ++EIYQ LD ++    + GY  ++   + ++EEEE+E +L YHSEKLA+AF
Sbjct: 689 IGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLAIAF 748

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           G++  S   TI + KNLR+C DCH+ IK++++   R IIVRD  RFHHFK G CSC D+W
Sbjct: 749 GVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 110/333 (33%), Positives = 176/333 (52%), Gaps = 14/333 (4%)

Query: 49  LVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYT 108
           ++C  G ++ A+ +F  IP+P    +N LI   S    +    L+          P+NYT
Sbjct: 74  MIC--GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYT 131

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           F  V+K+C+ L  L   RAVHCH   +G  +DL V  ALV+ YAK  +   A  VF RMP
Sbjct: 132 FPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMP 191

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
            + VVAWN+M++GY  +G   + I    LM+D    P+++T V +L   AQ G +  GR 
Sbjct: 192 ARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRA 250

Query: 229 VHEFIVG----QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
           VH + V           V++ T+L++MYA+CG++  A  +F+ M+  N + W+A++ G+ 
Sbjct: 251 VHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFV 310

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVA-VLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
           + G   EA  LF  M A G+   + T VA  L ACA+   +  G ++ A + +  GL   
Sbjct: 311 LCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKS-GLHTD 369

Query: 344 VEHHVCMVDLFGRAGLLNEAYKF-----VKDVI 371
           +     ++ ++ +AGL+++A        VKD +
Sbjct: 370 LTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTV 402



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 141/267 (52%), Gaps = 8/267 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRN 81
           +Q+HA L  +G     +    LLS+   AG I  A  +F  +   D+  ++ L+   ++N
Sbjct: 355 KQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQN 414

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
            KA+   ++   +R+M   N+ P   T  ++I +C+HL+ L  G+  H  V V G  S+ 
Sbjct: 415 GKAD---EAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASET 471

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            +  AL++ YAK   +D++R++FD MP + +V+WN+MI+GY  +G  KEA  LF  M+  
Sbjct: 472 SICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQ 531

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
              PD  T +C+++AC+  G +  G RW H      G+   +     ++++ AR G + +
Sbjct: 532 ACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDE 591

Query: 261 AREIFDMMS-ELNVIAWTAMISGYGMH 286
           A +    M  + +V  W A++    +H
Sbjct: 592 AYQFIQGMPLKADVRVWGALLGACRVH 618


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/536 (37%), Positives = 329/536 (61%), Gaps = 2/536 (0%)

Query: 46  LLSLVCDAGFITYA-QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP 104
           L+++    G +  A +R+F  + +     +N L+   ++ +    +L  Y +M  S + P
Sbjct: 249 LIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDP 308

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
             +T  +++ +C+ +  L+ G  +H     +G   D  +  +L++ Y        A+ +F
Sbjct: 309 DWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLF 368

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           D M  +S+V+WN MI+GY QNG   EAI LF  M   G+ P     +CV  AC+QL  + 
Sbjct: 369 DGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALR 428

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
           LG+ +H F +   L  ++ +++S+I+MYA+ G +  ++ IFD + E +V +W  +I+GYG
Sbjct: 429 LGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYG 488

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
           +HG G EA+ELF +M   G++P++ TF  +L AC+HAGLV++G   F  M   + + P +
Sbjct: 489 IHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKL 548

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           EH+ C+VD+ GRAG +++A + ++++ G+ P   +W+++L +C++H N  LG +VA  LL
Sbjct: 549 EHYTCVVDMLGRAGRIDDALRLIEEMPGD-PDSRIWSSLLSSCRIHGNLGLGEKVANKLL 607

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
            +EPE P +YV++SN++A +G+ D V  VR  M   GL+K  G S +EV  K + F +GD
Sbjct: 608 ELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGD 667

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
           +  P   E+ +    L  +    GY P++ S +H+LEEE++   LR HSEKLA++FGL+ 
Sbjct: 668 EMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLN 727

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           T+ G+ +R+ KNLR+C DCH+A KFIS   NR+I+VRD  RFHHF+ G CSC DYW
Sbjct: 728 TAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 202/426 (47%), Gaps = 46/426 (10%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNI 102
           T+++++    G  + ++ +F  +   + F +N ++   ++     D++  +  +I V+  
Sbjct: 145 TRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEH 204

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA-R 161
            P N+T   VIK+CA L  L LG+ +H         SD+ V  AL+  Y K   V+ A +
Sbjct: 205 KPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVK 264

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           +VFD M  K+V +WN+++ GY QN   ++A+ L+  M D G++PD  T   +L AC+++ 
Sbjct: 265 RVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMK 324

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            +  G  +H F +  GL V+  +  SL+++Y  CG    A+ +FD M   ++++W  MI+
Sbjct: 325 SLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIA 384

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC----------------------- 318
           GY  +G   EA+ LF +M + G++P  +  + V  AC                       
Sbjct: 385 GYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTE 444

Query: 319 ------------AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
                       A  G +    R+F  +R++      V     ++  +G  G   EA + 
Sbjct: 445 DIFVSSSIIDMYAKGGCIGLSQRIFDRLREK-----DVASWNVIIAGYGIHGRGKEALEL 499

Query: 367 VKDV--IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG--HYVMLSNIYA 422
            + +  +G KP    +T +L AC      + G+E    +L++    P   HY  + ++  
Sbjct: 500 FEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLG 559

Query: 423 LAGRMD 428
            AGR+D
Sbjct: 560 RAGRID 565



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 141/280 (50%), Gaps = 5/280 (1%)

Query: 13  AILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           ++L A  R+K L   +++H   +  G      +   LLSL    G    AQ +F  +   
Sbjct: 315 SLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHR 374

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
               +N +I   S+     +++  +R+M+   I P       V  +C+ LS L LG+ +H
Sbjct: 375 SLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELH 434

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
           C    +    D+ V +++++ YAK   + +++++FDR+ +K V +WN +I+GY  +G  K
Sbjct: 435 CFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGK 494

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSL 248
           EA+ LF  M   G+ PD  T   +L AC+  G ++ G  + ++ +    ++  +   T +
Sbjct: 495 EALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCV 554

Query: 249 INMYARCGNVSKA-REIFDMMSELNVIAWTAMISGYGMHG 287
           ++M  R G +  A R I +M  + +   W++++S   +HG
Sbjct: 555 VDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHG 594



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 157/337 (46%), Gaps = 35/337 (10%)

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG-YDSDLHVQAALVNFYAKSNN 156
           +V + +  +     ++++C     + +GR +H  V  S  + +D  +   ++  Y+   +
Sbjct: 97  VVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGS 156

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN-LMRDFGVNPDSTTCVCVLA 215
              +R VFD++  K++  WN+++S Y +N   ++A+ +F+ L+      PD+ T  CV+ 
Sbjct: 157 PSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIK 216

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA-REIFDMMSELNVI 274
           ACA L D+ LG+ +H       L  +V +  +LI MY +CG V +A + +FD+M    V 
Sbjct: 217 ACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVS 276

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-S 333
           +W A++ GY  +    +A++L+ +M   G+ P+  T  ++L AC+    +  G  +   +
Sbjct: 277 SWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFA 336

Query: 334 MRQEYGLLP------------------------GVEHHV-----CMVDLFGRAGLLNEAY 364
           +R    + P                        G+EH        M+  + + GL +EA 
Sbjct: 337 LRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAI 396

Query: 365 KFVKDVI--GEKPAPAVWTAMLGACKMHKNFDLGVEV 399
              + ++  G +P       + GAC       LG E+
Sbjct: 397 NLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKEL 433


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/527 (39%), Positives = 320/527 (60%), Gaps = 1/527 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  AQ++F  +   +   +N +I   ++  F+  +L  ++ M      P  +T  +V+
Sbjct: 142 GDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVL 201

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           + CA L  L  G+ VH  +   G++    V ++L + Y KS ++    K+   MP ++VV
Sbjct: 202 RGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVV 261

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           AWN++I+G  QNG  +E +  +N+M+  G  PD  T V VL+AC++L  +  G+ +H  +
Sbjct: 262 AWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEV 321

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  G    + + +SLI+MY+R G +  + + F      +V+ W++MI+ YG HG G EA+
Sbjct: 322 IKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEAL 381

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           ELFH+M    +  N VTF+++L AC+H+GL ++G   F  M ++Y L P +EH+ C+VDL
Sbjct: 382 ELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDL 441

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GRAG L EA   ++  +  +P   +W  +L ACK+HK  ++   ++E ++ ++P +   
Sbjct: 442 LGRAGRLEEAEGMIRS-MPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAAS 500

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+LSNI+A A     V  +R  M  + ++K  G S +E+    + FSMGDKSHP   EI
Sbjct: 501 YVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEI 560

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
             YL ELM   ++ GYVPE  S +H+++ EE+EY+L +HSEK A+AF LM TS  + IR+
Sbjct: 561 DLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRV 620

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +KNLR+C DCH+AIK IS   NREIIVRD  RFHHFK G CSC +YW
Sbjct: 621 MKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 187/390 (47%), Gaps = 38/390 (9%)

Query: 99  VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK----- 153
            S I      FS +++SC  L  L  G+ VH  +  SG   D  +   L+NFY+K     
Sbjct: 55  TSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFK 114

Query: 154 ------SN--------------------NVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
                 SN                    +++ A+K+FD M ++++  WN+MI+G  Q  F
Sbjct: 115 SSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEF 174

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            K+A+ LF  M   G  PD  T   VL  CA L  +  G+ VH  ++  G +++ V+ +S
Sbjct: 175 NKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSS 234

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L +MY + G++S   ++   M    V+AW  +I+G   +G   E +  ++ M+  G RP+
Sbjct: 235 LAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPD 294

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            +TFV+VLSAC+    + +G ++ A + +  G    +     ++ ++ R+G L ++ K  
Sbjct: 295 KITFVSVLSACSELATLGQGQQIHAEVIKA-GASSVLAVVSSLISMYSRSGCLEDSIKAF 353

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL--AG 425
            D   E     +W++M+ A   H   +  +E+   +  ++ E       LS +YA   +G
Sbjct: 354 VD--RENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKME-ANEVTFLSLLYACSHSG 410

Query: 426 RMDRVEVVRNIMIQK-GLKKHVGYSTVEVD 454
             ++     ++M++K  LK  + + T  VD
Sbjct: 411 LKEKGTEYFDLMVKKYKLKPRIEHYTCVVD 440



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 140/286 (48%), Gaps = 5/286 (1%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P      ++L+    L+ L   Q+VHA L+  G+  S  + + L  +   +G ++  +++
Sbjct: 192 PDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKL 251

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
              +P      +NTLI   ++     + L  Y  M ++   P   TF +V+ +C+ L+ L
Sbjct: 252 IKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATL 311

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+ +H  V  +G  S L V ++L++ Y++S  ++ + K F    +  VV W+SMI+ Y
Sbjct: 312 GQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAY 371

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVN 241
             +G  +EA+ LF+ M D  +  +  T + +L AC+  G  + G    + +V +  L   
Sbjct: 372 GFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPR 431

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
           +   T ++++  R G + +A  +   M  + + I W  +++   +H
Sbjct: 432 IEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLH 477


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/529 (39%), Positives = 329/529 (62%), Gaps = 19/529 (3%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   ++ +I   ++  +  ++L  +++MI+    P++ T  +++ +CA L  L+ G   H
Sbjct: 359 DVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETH 418

Query: 130 CHVFVSGYDS------------DLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAW 175
            +       S            DL V  AL++ Y+K  +   AR +F+ +P  +++VV W
Sbjct: 419 AYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTW 478

Query: 176 NSMISGYEQNGFAKEAIGLFNLM--RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
             MI GY Q G + +A+ LF+ M  + + V P++ T  C+L ACA L  + +G+ +H ++
Sbjct: 479 TVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYV 538

Query: 234 VGQGLDVNVV--LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
                  + V  +A  LI+MY++CG+V  AR +FD M + N ++WT+M+SGYGMHG G E
Sbjct: 539 TRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKE 598

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           A+++F +M+  G  P++++F+ +L AC+H+G+V +G   F  MR +YG++   +H+ C++
Sbjct: 599 ALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVI 658

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411
           DL  R+G L++A+K ++++  E P+ A+W A+L AC++H N +L       L+S++ EN 
Sbjct: 659 DLLARSGRLDKAWKTIQEMPME-PSAAIWVALLSACRVHSNVELAEYALNKLVSMKAEND 717

Query: 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTN 471
           G Y ++SNIYA A R   V  +R +M + G+KK  G S V+  +    F +GD+SHP + 
Sbjct: 718 GSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSP 777

Query: 472 EIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTI 531
           EIY  L+ L+GR +  GYVPE+  A+H++++EE+   L  HSEKLALA+GL+ TSPG  I
Sbjct: 778 EIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYGLLTTSPGCPI 837

Query: 532 RIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           RI KNLR+C DCHSA  +IS   + EIIVRD  RFHHFK GSCSC  YW
Sbjct: 838 RITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 115/523 (21%), Positives = 219/523 (41%), Gaps = 108/523 (20%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           +PSP +  +N L+  + +      ++    RM+ +   P ++T    +K+C  L     G
Sbjct: 110 VPSP-AVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSG 168

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK---SVVAWNSMISGY 182
            A H  +  +G++S++ V  ALV  Y++S +++ A  VFD +  K    V++WNS+++ +
Sbjct: 169 SAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAH 228

Query: 183 EQNGFAKEAIGLFNLM------RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
            +    + A+ LF+ M      +      D  + V +L ACA L  +   + +H + +  
Sbjct: 229 VKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRN 288

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM----------------- 279
           G   +  +  +LI+ YA+CG++  A  +F++M   +V++W AM                 
Sbjct: 289 GTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELF 348

Query: 280 ------------------ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
                             I+GY   GYG EA++ F +M  +G  PN+VT +++LSACA  
Sbjct: 349 KNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASL 408

Query: 322 GLVQEGH----------------------------------------RVFASMRQEYGLL 341
           G + +G                                         R F + R  +  +
Sbjct: 409 GALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSI 468

Query: 342 PGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKP---APAVWT--AMLGACKMHKN 392
           P  E +V     M+  + + G  N+A K   ++I  KP   AP  +T   +L AC    +
Sbjct: 469 PRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMI-SKPYAVAPNAYTISCILMACAHLSS 527

Query: 393 FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVE 452
             +G ++  ++          Y + + +  +  +   V+  RN+      +  V ++++ 
Sbjct: 528 LRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMM 587

Query: 453 VDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESES 495
                     G   H    E     D++    ++AG+VP+  S
Sbjct: 588 ---------SGYGMHGRGKEALDIFDKM----QKAGFVPDDIS 617


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/544 (35%), Positives = 334/544 (61%), Gaps = 1/544 (0%)

Query: 37  GRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRR 96
           G++  M   +++ +     +  A+R+F  +   D   + T++   ++    + +L F+RR
Sbjct: 203 GKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRR 262

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M    I+   YTF +++ +C  LS L  G+ +H ++  + YD ++ V +ALV+ Y+K  +
Sbjct: 263 MRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRS 322

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           +  A   F RM  K++++W ++I GY QNG ++EA+ +F+ M+  G++PD  T   V+++
Sbjct: 323 IKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISS 382

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           CA L  ++ G   H   +  GL   + ++ +L+ +Y +CG++  A  +FD M   + ++W
Sbjct: 383 CANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSW 442

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           TA+++GY   G   E ++LF +M A  V+P+ VTF+ VLSAC+ AG V++G   F SM++
Sbjct: 443 TALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQK 502

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
           ++G++P  +H+ CM+DL+ R+G L EA +F+K  +   P    W  +L AC++  + ++G
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQ-MPMHPDAIGWGTLLSACRLRGDMEIG 561

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQK 456
              AE+LL ++P+NP  YV+L +++A  G  ++V  +R  M  + +KK  G S ++   K
Sbjct: 562 QWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNK 621

Query: 457 NYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKL 516
            ++FS  D+SHP +  IY+ L+ L  +  E GY P+  S +H++ + ++ + + +HSEKL
Sbjct: 622 VHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKL 681

Query: 517 ALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSC 576
           A+AFGLM     M IRIVKNLR+CVDCH+A K IS  T R+I+VRD +RFH F  G CSC
Sbjct: 682 AIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSC 741

Query: 577 LDYW 580
            D+W
Sbjct: 742 GDFW 745



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 217/478 (45%), Gaps = 80/478 (16%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVA---GYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P S  Y A+L A  R +P      H ++     +     +L  LL+    AG    A+R
Sbjct: 3   RPLSSQYAALLSAAARTEPHAAGALHCVILRTLPHPPPTHLLNHLLTAYGKAGRHARARR 62

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANF--STDSL---------LFYRRMIV----------- 99
           +F   P P+ F +N L+   + A      DSL         + Y  +I            
Sbjct: 63  VFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARA 122

Query: 100 -----------SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
                      S++ PS  T SA++ + + L    LGR  HC +   G+  +  V + LV
Sbjct: 123 VRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLV 182

Query: 149 NFYAKSNNVDVARKVFDRMPDKSVV-------------------------------AWNS 177
             YAK   +  A++VFD M  K+VV                                W +
Sbjct: 183 GMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTT 242

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           M++G+ QNG   +A+  F  MR  G+  D  T   +L AC  L  ++ G+ +H +I+   
Sbjct: 243 MVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTH 302

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
            D NV + ++L++MY++C ++  A   F  MS  N+I+WTA+I GYG +G   EAV +F 
Sbjct: 303 YDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFS 362

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDL 353
            M+  G+ P++ T  +V+S+CA+   ++EG +          L+ G+ H++     +V L
Sbjct: 363 EMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHC-----LALVSGLMHYITVSNALVTL 417

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPE 409
           +G+ G + +A++   +++        WTA++            +++ E +L+  V+P+
Sbjct: 418 YGKCGSIEDAHRLFDEMLFHDQVS--WTALVTGYAQFGRAKETIDLFEKMLAKDVKPD 473



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 136/282 (48%), Gaps = 5/282 (1%)

Query: 11  YEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           + +IL A   L  L+Q   +HA++I   Y  +  + + L+ +      I  A+  F  + 
Sbjct: 275 FGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMS 334

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             +   +  LI+   +   S +++  +  M    I P ++T  +VI SCA+L+ L  G  
Sbjct: 335 CKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQ 394

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
            HC   VSG    + V  ALV  Y K  +++ A ++FD M     V+W ++++GY Q G 
Sbjct: 395 FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGR 454

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLAT 246
           AKE I LF  M    V PD  T + VL+AC++ G ++ G  + H      G+       T
Sbjct: 455 AKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYT 514

Query: 247 SLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHG 287
            +I++Y+R G + +A E    M    + I W  ++S   + G
Sbjct: 515 CMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRG 556


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/635 (36%), Positives = 349/635 (54%), Gaps = 69/635 (10%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF---ITYAQRIFFCIPSP 69
           A+      L+ ++Q+ A LI      S  +++  L L C       + YA+R+F  I +P
Sbjct: 10  ALFSKCKSLRTVKQIQA-LIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNP 68

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS-PSNYTFSAVIKSCAHLSILNLGRAV 128
           D F++NTLI   S ++  +++L  +  M   +++ P +++F+ ++K+ A+   L  G  +
Sbjct: 69  DVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQL 128

Query: 129 HC---------HVFVSGYDSDLHVQAALVNF----------------------------- 150
           HC         H+FV      ++ + A + F                             
Sbjct: 129 HCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGV 188

Query: 151 ------------------------YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
                                   Y K+  + +AR+VF +MP K  V+W++MI G+  NG
Sbjct: 189 KDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNG 248

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
              +A   F  +R  G+ P+  +   VL+ACAQ G  + GR +H F+   G    + +  
Sbjct: 249 NFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNN 308

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           +LI+ Y++CGN+  AR +FD M   + ++WTAMI+G  MHGYG EA+ LF+ M    ++P
Sbjct: 309 ALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKP 368

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           +++TF+++L AC+HAGLV  G   F+ M   YG+ P +EH+ CMVDL+GRAG L +AY F
Sbjct: 369 DSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDF 428

Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
           V   +   P   VW  +LGAC +H N  L  +V   L  ++PEN G +V+LSNIYA+AG+
Sbjct: 429 VCQ-MPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGK 487

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR- 485
              V  +R  M  + LKK  G+S +EV++  Y F  G+K +    E +Q L E+M R R 
Sbjct: 488 WKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRI 547

Query: 486 EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
           E GYVPE  S +H++E EE+E S+  HSEKLA+AFG+ +   G  IR+VKNLR+C DCH+
Sbjct: 548 EGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHT 607

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            +K IS     EI+VRDR RFH F  GSCSC DYW
Sbjct: 608 VMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 148/288 (51%), Gaps = 9/288 (3%)

Query: 5   QPHSPAYEAILKAGPR---LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+  A+ AI+ A  R   +K  +QV   + +    R+ +    +L+    AG +  A+ 
Sbjct: 169 EPNIVAWNAIVAACFRCEGVKDAEQVFRCMPI----RNLTSWNIMLAGYTKAGELQLARE 224

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  D   ++T+I+  +      D+  F+R +    + P+  + + V+ +CA    
Sbjct: 225 VFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGA 284

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
              GR +H  V  SG+   + V  AL++ Y+K  N+D+AR VFD M  +S V+W +MI+G
Sbjct: 285 FEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAG 344

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDV 240
              +G+ +EAI LFN M +  + PDS T + +L AC+  G +DLG  +    +   G++ 
Sbjct: 345 MAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEP 404

Query: 241 NVVLATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMHG 287
            +     ++++Y R G + +A + +  M    N I W  ++    +HG
Sbjct: 405 VIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHG 452


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/573 (37%), Positives = 344/573 (60%), Gaps = 8/573 (1%)

Query: 14  ILKAGPRLKPLQQVHAHLI-VAGYGRSRSMLTKLLSLVCDAGF---ITYAQRIFFCIPSP 69
           +LK    +   +QVHA  I ++ +  S    + +L+    +G+   + YA  IF  I  P
Sbjct: 37  LLKRCNNIDEFKQVHARFIKLSLFCSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDP 96

Query: 70  DSFLFNTLIIRNSKANFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
            +F F T+I R      S + +L FY  M+   I P N+T+  ++K+C  L  +  G+ +
Sbjct: 97  CTFDFKTMI-RGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKAIREGKQI 155

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H HVF  G ++D+ VQ +L+N Y +   ++++  VF+++  KS  +W+SM S     G  
Sbjct: 156 HGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACVGMGMW 215

Query: 189 KEAIGLFNLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            E + LF  M R+  +  + +  V  L+ACA  G ++LG  +H F++    ++N+++ TS
Sbjct: 216 SECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISELNIIVKTS 275

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L++MY +CG +  A  IF  M + N + ++AMISG+ +HG G  A+ +F  M   G+ P+
Sbjct: 276 LVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSEMIKEGLEPD 335

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           +V +V++L+AC+H+GLV+EG RVF  M +E  + P  EH+ C+VDL GRAGLL EA + +
Sbjct: 336 HVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETI 395

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
           + +  E+    VW + L  C++H+N +LG   A+ LL +   NPG Y+++SN+Y+ A   
Sbjct: 396 QSIPIEQ-NDVVWRSFLSQCRVHQNIELGQIAAQELLKLCSHNPGDYLLISNMYSQAHMW 454

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           D V   R  +  KGLK+  G+STV+V  K + F   D+SHP   EIY+ L ++  + +  
Sbjct: 455 DDVARSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRSHPQCKEIYKMLHQMEWQLKFE 514

Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
           GY P+    +  ++EEE++  L+ HS+K+A+AF L+ T PG  I+I +NLRMC DCH+  
Sbjct: 515 GYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFALLYTPPGSIIKIARNLRMCSDCHTYT 574

Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           K IS+   REI+VRDR RFH FK G+CSC DYW
Sbjct: 575 KKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 607



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 154/325 (47%), Gaps = 11/325 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P +  Y  +LKA  RLK +   +Q+H H+   G      +   L+++    G +  +  
Sbjct: 130 EPDNFTYPCLLKACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSST 189

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLS 120
           +F  +    +  ++++          ++ L+ +R M   +N+        + + +CA+  
Sbjct: 190 VFEKLEFKSAASWSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTG 249

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            LNLG ++H  +  +  + ++ V+ +LV+ Y K   +D A  +F +M  ++ + +++MIS
Sbjct: 250 ALNLGMSIHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMIS 309

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG-LD 239
           G+  +G  + A+ +F+ M   G+ PD    V +L AC+  G +  GR V   ++ +G ++
Sbjct: 310 GFALHGEGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVE 369

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHG---YGTEAVEL 295
                   L+++  R G + +A E    +  E N + W + +S   +H     G  A + 
Sbjct: 370 PTAEHYGCLVDLLGRAGLLEEALETIQSIPIEQNDVVWRSFLSQCRVHQNIELGQIAAQE 429

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAH 320
             ++ +H   P +   ++ + + AH
Sbjct: 430 LLKLCSHN--PGDYLLISNMYSQAH 452


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/578 (37%), Positives = 342/578 (59%), Gaps = 16/578 (2%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           +  ++K    +K +   +Q+H  +I  G     ++ T L+        I  A ++F  + 
Sbjct: 297 FATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMH 356

Query: 68  SPDSFLFNTLIIRNSKANFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
              + +  T II     N  TD ++  + +M    + P+++T+S ++ + A +S      
Sbjct: 357 GVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVS----PS 412

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H  V  + Y++   V  AL + Y+K  + + A K+F+ + +K +VAW++M+SGY Q G
Sbjct: 413 QIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMG 472

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ-LGDIDLGRWVHEFIVGQGLDVNVVLA 245
             + A+ +F  +   GV P+  T   VL ACA     ++ G+  H   +  G    + ++
Sbjct: 473 DIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVS 532

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           ++L+ MYA+ GN+  A E+F    + ++++W +MISGY  HG G +++++F  MR+  + 
Sbjct: 533 SALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLE 592

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
            + +TF+ V+SAC HAGLV EG R F  M ++Y ++P +EH+ CMVDL+ RAG+L +A  
Sbjct: 593 LDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAM- 651

Query: 366 FVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
              D+I + P PA   +W  +L AC++H N  LG   AE L+S++P++   YV+LSNIYA
Sbjct: 652 ---DLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYA 708

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            AG       VR +M  K +KK  GYS +EV  K + F  GD SHP ++ IY  L+EL  
Sbjct: 709 TAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSI 768

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           R ++AGY P+++  +H++EEE +E  L  HSE+LA+AFGL+ T PG  I+IVKNLR+C D
Sbjct: 769 RLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGD 828

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+ IK IS    R+I+VRD  RFHHFK GSCSC DYW
Sbjct: 829 CHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 124/408 (30%), Positives = 204/408 (50%), Gaps = 9/408 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH   I  G+    S+ T L+ +      +   +R+F  +   +   + +L+    + 
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             +  +L  + +M +  I P+ +TF+AV+   A    +  G  VH  V  SG DS + V 
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            ++VN Y+KS  V  A+ VFD M +++ V+WNSMI+G+  NG   EA  LF  MR  GV 
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
              T    V+  CA + ++   + +H  ++  G D ++ + T+L+  Y++C  +  A ++
Sbjct: 292 LTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKL 351

Query: 265 FDMMSEL-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           F MM  + NV++WTA+ISGY  +G    A+ LF +MR  GVRPN+ T+  +L+A A    
Sbjct: 352 FCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP 411

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
            Q    V   ++  Y   P V     + D + + G  NEA K + ++I EK   A W+AM
Sbjct: 412 SQIHALV---VKTNYENSPSV--GTALSDSYSKIGDANEAAK-IFELIDEKDIVA-WSAM 464

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
           L       + +  V++    L+ E   P  +   S + A A     VE
Sbjct: 465 LSGYAQMGDIEGAVKIFLQ-LAKEGVEPNEFTFSSVLNACAAPTASVE 511



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 144/263 (54%)

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           ++Q++F   P       N L+   S+ + + ++L  +  +  S       + S V+K C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            L    +G+ VHC     G+  D+ V  +LV+ Y K+ +V+   +VFD M  K+VV+W S
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +++GY QNG  ++A+ LF+ M+  G+ P+  T   VL   A  G ++ G  VH  ++  G
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           LD  + +  S++NMY++   VS A+ +FD M   N ++W +MI+G+  +G   EA ELF+
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 298 RMRAHGVRPNNVTFVAVLSACAH 320
           RMR  GV+     F  V+  CA+
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCAN 306



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 127/227 (55%), Gaps = 3/227 (1%)

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           ++++FD  P + +   N ++  + +N   KEA+ LF  +R  G   D ++  CVL  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           L D  +G+ VH   +  G   +V + TSL++MY +  +V     +FD M   NV++WT++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           ++GY  +G   +A++LF +M+  G++PN  TF AVL   A  G V++G +V  +M  + G
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVH-TMVIKSG 223

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           L   +     MV+++ ++ ++++A K V D +  + A + W +M+  
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDA-KAVFDSMENRNAVS-WNSMIAG 268


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/483 (40%), Positives = 314/483 (65%), Gaps = 2/483 (0%)

Query: 99  VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158
           + N+ P   T  +++ +CA L  L  G+ +H +    G D +L V  A+++ Y K ++++
Sbjct: 4   LDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIE 63

Query: 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
            A++VF+R+ +K V++W SM+SG  ++G+ +E++ LF  M+   + PD  T V VL+ACA
Sbjct: 64  SAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACA 123

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
           Q G +D G+++H  I    ++ ++VL T+L++MYA+CG++  A ++F  M   NV  W A
Sbjct: 124 QTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNA 183

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           MI G  MHG+G +A+ LF +M    + P++VTF+A+L AC+HAGLV EG  +F +M+ ++
Sbjct: 184 MIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKF 243

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
            + P +EH+ C+VDL  RA  +++A  F+++ +  K    +W  +LGAC+   +FDL  +
Sbjct: 244 QIEPRMEHYGCVVDLLCRARKVDDALAFIEN-MPIKANSVLWATLLGACRSGGHFDLAEK 302

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458
           +   ++ +EP++ G YVMLSN+YA   + D    +R  M  KG++K  G S +E++   +
Sbjct: 303 IXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIH 362

Query: 459 LFSMGDKSHPNTNEIYQYLDELMGRCR-EAGYVPESESAMHELEEEEREYSLRYHSEKLA 517
            F  GD+SH  T +IY  ++E+  R   + G+VP + + + ++EEEE+E+SL  HSEKLA
Sbjct: 363 QFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLA 422

Query: 518 LAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCL 577
           +A GL+ T  G  IRIVKNLR+C DCHS +K  S   NREI+ RDR RFHHFK GSCSC+
Sbjct: 423 IALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCM 482

Query: 578 DYW 580
           D+W
Sbjct: 483 DFW 485



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 118/229 (51%), Gaps = 3/229 (1%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           + N +P      +++ A  +L  L++   +H++    G   + S+   +L + C    I 
Sbjct: 4   LDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIE 63

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            AQ +F  I   D   + +++   +K+ +  +SL  +R+M +  I P   T   V+ +CA
Sbjct: 64  SAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACA 123

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
               L+ G+ +H  +     + DL ++ ALV+ YAK  ++D+A +VF RM  ++V  WN+
Sbjct: 124 QTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNA 183

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
           MI G   +G  ++AI LF+ M    + PD  T + +L AC+  G +D G
Sbjct: 184 MIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEG 232


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/555 (38%), Positives = 337/555 (60%), Gaps = 10/555 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH H++ +G+     +++ L+ L  +   +  A+++F    + D   +N +I    K   
Sbjct: 217 VHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVE 276

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
              + + + RM+  ++     +++ +I   A +  ++  +     +F    + +L    +
Sbjct: 277 MGHARMVFDRMVCRDV----ISWNTMINGYAIVGKIDEAK----RLFDEMPERNLVSWNS 328

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           ++  + K  NV+ A  +F  MP + VV+WNSM++ Y Q G   EA+ LF+ MR  GV P 
Sbjct: 329 MLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPT 388

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T V +L+ACA LG +D G  +H +I    ++VN ++ T+L++MYA+CG +S A ++F+
Sbjct: 389 EATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFN 448

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M   +V+AW  +I+G  +HG   EA +LF  M+  GV PN++TFVA+LSAC+HAG+V E
Sbjct: 449 AMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDE 508

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G ++   M   YG+ P VEH+ C++DL  RAG L EA + +  +  E P P+   A+LG 
Sbjct: 509 GQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPME-PNPSALGALLGG 567

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C++H NF+LG  V + L++++P + G Y++LSNIYA A + D    VRN+M   G+ K  
Sbjct: 568 CRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVP 627

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA-GYVPESESAMHELEEEER 505
           G S +E+    + F  GD SHP +N+IY+ L+E+  R + A GY  ++ + + ++EEE++
Sbjct: 628 GVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDK 687

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
           E++L  HSEKLA+A+GL+       IRIVKNLR+C DCH  IK IS    REIIVRDR R
Sbjct: 688 EHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNR 747

Query: 566 FHHFKRGSCSCLDYW 580
           FHHF+ G CSCLD+W
Sbjct: 748 FHHFEDGECSCLDFW 762



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 217/443 (48%), Gaps = 31/443 (6%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCD-AGFITYAQRIFF 64
           P +P   ++      L+ L+QVHA +I       +      LS +     F+ YA+ IF 
Sbjct: 94  PSNPQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPFPTFLAYAKTIFH 153

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            + +P   L+N+LI   S +    ++L  Y  M+ S + P + T+  VIK+C   S+   
Sbjct: 154 HLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWF 213

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G  VH HV  SG++ D ++ ++L++ YA   ++  A+++F+    + VV+WN+MI GY +
Sbjct: 214 GLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVK 273

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           +     A  +F+ M    V  D  +   ++   A +G ID  + + +    +  + N+V 
Sbjct: 274 HVEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFD----EMPERNLVS 325

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             S++  + +CGNV  A  +F  M   +V++W +M++ Y   G   EA+ LF +MRA GV
Sbjct: 326 WNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGV 385

Query: 305 RPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
           +P   T V++LSACAH G + +G   H      R E   + G      +VD++ + G ++
Sbjct: 386 KPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG----TALVDMYAKCGKIS 441

Query: 362 EAYKFV-----KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL--LSVEPENPGHY 414
            A +       KDV+        W  ++    +H N     ++ + +    VEP N   +
Sbjct: 442 LATQVFNAMESKDVLA-------WNTIIAGMAIHGNVKEAQQLFKEMKEAGVEP-NDITF 493

Query: 415 VMLSNIYALAGRMDRVEVVRNIM 437
           V + +  + AG +D  + + + M
Sbjct: 494 VAILSACSHAGMVDEGQKLLDCM 516


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/556 (37%), Positives = 325/556 (58%), Gaps = 2/556 (0%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            + +H   + A + R       LL +    G +  A + F  +       + +LI    + 
Sbjct: 674  RALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVRE 733

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
                D++  +  M    +SP  Y+ ++V+ +CA  + L+ GR VH ++  +     L V 
Sbjct: 734  GLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVS 793

Query: 145  AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             AL++ YAK  +++ A  VF ++P K +V+WN+MI GY +N    EA+ LF  M+     
Sbjct: 794  NALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-R 852

Query: 205  PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            PD  T  C+L AC  L  +++GR +H  I+  G    + +A +LI+MY +CG++  AR +
Sbjct: 853  PDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLL 912

Query: 265  FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
            FDM+ E ++I WT MISG GMHG G EA+  F +MR  G++P+ +TF ++L AC+H+GL+
Sbjct: 913  FDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLL 972

Query: 325  QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
             EG   F SM  E  + P +EH+ CMVDL  R G L++AY  + + +  KP   +W A+L
Sbjct: 973  NEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLI-ETMPIKPDATIWGALL 1031

Query: 385  GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
              C++H + +L  +VAEH+  +EP+N G+YV+L+NIYA A + + V+ +R  + ++GLKK
Sbjct: 1032 CGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKK 1091

Query: 445  HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
              G S +EV  K   F   D +HP    I+  L+ L  + +  G+ P+   A+    + E
Sbjct: 1092 SPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDME 1151

Query: 505  REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
            +E +L  HSEKLA+AFG++    G TIR+ KNLR+C DCH   KF+S  T REII+RD  
Sbjct: 1152 KEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSN 1211

Query: 565  RFHHFKRGSCSCLDYW 580
            RFHHFK G CSC D+W
Sbjct: 1212 RFHHFKDGFCSCRDFW 1227



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 232/467 (49%), Gaps = 34/467 (7%)

Query: 10  AYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           AY +IL+     K LQ+   VH+ +   G      +  KL+ +    G +   +RIF  I
Sbjct: 453 AYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHI 512

Query: 67  PSPDS-FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
            S +  FL+N ++   +K     +S+  +++M    I+ ++YTFS ++K  A L  +   
Sbjct: 513 LSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGEC 572

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           + +H  V+  G+ S   V  +L+  Y KS  VD A K+FD + D+ VV+WNSMISG   N
Sbjct: 573 KRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMN 632

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV----N 241
           GF+  A+  F  M    V  D  T V  +AACA +G + LGR +H    GQG+       
Sbjct: 633 GFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALH----GQGVKACFSRE 688

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V+   +L++MY++CGN++ A + F+ M +  V++WT++I+ Y   G   +A+ LF+ M +
Sbjct: 689 VMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMES 748

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ-EYGLLPGVEHHVCMVDLFGRAGLL 360
            GV P+  +  +VL ACA    + +G  V   +R+    L   V +   ++D++ + G +
Sbjct: 749 KGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSN--ALMDMYAKCGSM 806

Query: 361 NEAYKF-----VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415
            EAY       VKD++        W  M+G    +    L  E  +    ++ E+    +
Sbjct: 807 EEAYLVFSQIPVKDIVS-------WNTMIGG---YSKNSLPNEALKLFAEMQKESRPDGI 856

Query: 416 MLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
            ++ +    G +  +E+ R I    G     GYS+ E+   N L  M
Sbjct: 857 TMACLLPACGSLAALEIGRGI---HGCILRNGYSS-ELHVANALIDM 899


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 342/592 (57%), Gaps = 34/592 (5%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           + +++VHA L+  G     S    L+S    +  +  A+R F   P  D  L++ L+   
Sbjct: 18  RAVRRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAV 77

Query: 82  SKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
           S ++     L   RRM+  + + P ++  +++  +   L  L LGR +H H   S Y +D
Sbjct: 78  SHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSAD 137

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
             V+++L++ Y K      ARKVFD +  K+ V W ++ISGY  NG   EA+ LF  M  
Sbjct: 138 NVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPA 197

Query: 201 FGVNP--------------------------------DSTTCVCVLAACAQLGDIDLGRW 228
            G+                                  D+     V+   A L  + LGR 
Sbjct: 198 HGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQ 257

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H F++  G   ++++  +L++MY++C ++  ARE+F+ ++  +VI+WT ++ G   HG 
Sbjct: 258 LHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGR 317

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             E   L++RM   G++PN VTFV ++ AC+HAGLVQ+G ++F SM++EYG+ PGV+H+ 
Sbjct: 318 AEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYT 377

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
           C +DL  R+G L+EA K +  +  E P  A W A+L ACK H +  + + VA++LL + P
Sbjct: 378 CYLDLLSRSGYLSEAEKLITTMPYE-PDEATWGALLSACKKHNDTQMCLRVADNLLELRP 436

Query: 409 ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHP 468
           ++P  Y++LSN+YA+  + D V  VR IM +  ++K  GYS VE  +++ +F  G+    
Sbjct: 437 KDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLD 496

Query: 469 NTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPG 528
              EI  +L+EL+   R+ GYVP++ S MH+LEE E+E  L  HSE+LA+AFG++++ PG
Sbjct: 497 VGEEITCFLEELVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPG 556

Query: 529 MTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             IR+VKNLR+C DCH+ +KFIS    R+IIVRD  RFHHF+ G+CSC ++W
Sbjct: 557 SVIRVVKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/578 (35%), Positives = 337/578 (58%), Gaps = 5/578 (0%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    Y A + A  + K L   +++H HL  + +     +   L+ L C  G +  A ++
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   D   + +LI   ++ +   +++     M+     P+ +TF++++K+    +  
Sbjct: 109 FDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            +G  +H       +  D++V +AL++ YA+   +D+A  VFD++  K+ V+WN++ISG+
Sbjct: 169 GIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            + G  + A+ +F  M+  G      T   + +  A +G ++ G+WVH  +V     +  
Sbjct: 229 ARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTA 288

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +  ++++MYA+ G++  AR++F+ +   +++ W +M++ +  +G G EAV  F  MR  
Sbjct: 289 FVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+  N +TF+ +L+AC+H GLV+EG   F  M +EY L P +EH+V +VDL GRAGLLN 
Sbjct: 349 GIYLNQITFLCILTACSHGGLVKEGKHYF-DMIKEYNLEPEIEHYVTVVDLLGRAGLLNY 407

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A  F+  +  E P  AVW A+L AC+MHKN  +G   A+H+  ++P++ G  V+L NIYA
Sbjct: 408 ALVFIFKMPME-PTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYA 466

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             G  D    VR +M   G+KK    S VE+    ++F   D +HP   EIY+  DE+  
Sbjct: 467 STGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISM 526

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           + R+ GYVP+ +  +  ++E+ERE +L+YHSEK+ALAF L++   G TIRI+KN+R+C D
Sbjct: 527 KIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGD 586

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CHSA K+IS    REI+VRD  RFHHF  GSCSC DYW
Sbjct: 587 CHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 153/305 (50%), Gaps = 12/305 (3%)

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           ++P+   + A I +CA    L+  R +H H+  S ++ D  +  +L++ Y K  +V  A 
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAH 106

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           KVFD+M  K +V+W S+I+GY QN    EAIGL   M      P+  T   +L A     
Sbjct: 107 KVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYA 166

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           D  +G  +H   V      +V + ++L++MYARCG +  A  +FD +   N ++W A+IS
Sbjct: 167 DSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALIS 226

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM---RQEY 338
           G+   G G  A+ +F  M+ +G    + T+ ++ S  A  G +++G  V A M   RQ+ 
Sbjct: 227 GFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKL 286

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
               G      M+D++ ++G + +A K  + V+ +      W +ML A      + LG E
Sbjct: 287 TAFVG----NTMLDMYAKSGSMIDARKVFERVLNKD--LVTWNSMLTA---FAQYGLGKE 337

Query: 399 VAEHL 403
              H 
Sbjct: 338 AVSHF 342


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/449 (43%), Positives = 295/449 (65%), Gaps = 1/449 (0%)

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           +F      +L V  A+++ Y++   V+ AR +FD+M +K +V W++MISGY ++   +EA
Sbjct: 5   LFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEA 64

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           + LF+ M+ FG+ PD  T + V++ACA+LG +D  +W+H ++   GL   + +  +LI+M
Sbjct: 65  LNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDM 124

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           YA+CGN+  AR +F+ M   NVI+WT+MI+ + +HG  + A++ F++M+   ++PN VTF
Sbjct: 125 YAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTF 184

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           V VL AC+HAGLV+EG R FASM  E+ + P  EH+ CMVDLFGRA LL +A + V + +
Sbjct: 185 VGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELV-ETM 243

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
              P   +W +++ AC++H   +LG   A+ +L +EP++ G  V LSNIYA   R   V 
Sbjct: 244 PLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVG 303

Query: 432 VVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVP 491
            +RN+M Q+G+ K  G S +E++ + Y F M DK H   ++IY+ LDE++   +  GY P
Sbjct: 304 ELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTP 363

Query: 492 ESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFIS 551
            + S + ++EEE ++  + +HSEKLAL +GLM    G  IRIVKNLR+C DCH+ IK +S
Sbjct: 364 NTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVS 423

Query: 552 VATNREIIVRDRLRFHHFKRGSCSCLDYW 580
                EIIVRDR RFHH+K G CSC DYW
Sbjct: 424 KVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 130/255 (50%), Gaps = 8/255 (3%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           R+  +LT ++S     G +  A+ IF  +   D   ++ +I   ++++   ++L  +  M
Sbjct: 12  RNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEM 71

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
            V  I P   T  +VI +CA L +L+  + +H +V  +G    L V  AL++ YAK  N+
Sbjct: 72  QVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNL 131

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
             AR VF++M  ++V++W SMI+ +  +G A  A+  F  M+D  + P+  T V VL AC
Sbjct: 132 GAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYAC 191

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATS----LINMYARCGNVSKAREIFDMMS-ELN 272
           +  G ++ GR     +  +    N+         +++++ R   +  A E+ + M    N
Sbjct: 192 SHAGLVEEGRRTFASMTNEH---NITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPN 248

Query: 273 VIAWTAMISGYGMHG 287
           V+ W ++++   +HG
Sbjct: 249 VVIWGSLMAACQIHG 263



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 96/207 (46%), Gaps = 7/207 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P      +++ A  RL  L +   +H ++   G G +  +   L+ +    G +  A+ 
Sbjct: 77  KPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARG 136

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  + S +   + ++I   +    ++++L F+ +M   NI P+  TF  V+ +C+H  +
Sbjct: 137 VFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGL 196

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQ-AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMI 179
           +  GR     +      +  H     +V+ + ++N +  A ++ + MP   +VV W S++
Sbjct: 197 VEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLM 256

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           +  + +G  +  +G F   +   + PD
Sbjct: 257 AACQIHG--ENELGEFAAKQVLELEPD 281


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/536 (39%), Positives = 328/536 (61%), Gaps = 7/536 (1%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN-FSTDSLLFYRRMIVSNISP 104
           L+S+    G +  A R+F  +P  +   + T++   + A+    ++L F   M    ++P
Sbjct: 121 LVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAP 180

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           + YTFS+V+ +C    +L    A+H      G DSD+ V+++L++ Y K  ++D  R+VF
Sbjct: 181 NAYTFSSVLGACGTPGVLA---ALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVF 237

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           D M  + +V WNS+I+G+ Q+G    AI LF  M+D G + +  T   VL AC  +  ++
Sbjct: 238 DEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLE 297

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
            GR VH  ++    D+  +L  +L++MY +CG++  A  +F  M + +VI+W+ MISG  
Sbjct: 298 AGRQVHAHVLKYERDL--ILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLA 355

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
            +G   EA+ +F  M++ GV PN +T V VL AC+HAGLV++G   F SM++ +G+ P  
Sbjct: 356 QNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPER 415

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           EHH CMVDL GRAG L+EA +F++D+  E P   +W  +LGAC+MHK+ +L    A  +L
Sbjct: 416 EHHNCMVDLLGRAGKLDEAVEFIRDMNLE-PDAVIWRTLLGACRMHKSGNLAAYAAREIL 474

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
            +EP++ G  V+LSN YA   +    E     M  +G+KK  G S +E+++  ++F  GD
Sbjct: 475 KLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGD 534

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
            SHP ++ I Q L+ L+GR    GYVP++E  + +L  E++E  L+YHSEK+A+AFG M 
Sbjct: 535 LSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGTMH 594

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
              G  IRI+KNLR+C DCH+  K +S +  R II+RD +RFHHF+ G+CSC DYW
Sbjct: 595 AVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 158/330 (47%), Gaps = 30/330 (9%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHV--------FVSGYDSDLHVQAALVNFYAKSNNVDV 159
           + + ++K C        GR +H HV        +  G    + V  +LV+ YAK   +D 
Sbjct: 74  SLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDD 133

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQ-NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
           A ++FDRMP+++VV W ++++     +G  +EA+     M   GV P++ T   VL AC 
Sbjct: 134 ALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACG 193

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
             G +     +H   V  GLD +V + +SLI+ Y + G++   R +FD M   +++ W +
Sbjct: 194 TPGVLAA---LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNS 250

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQE 337
           +I+G+   G G  A+ELF RM+  G   N  T  +VL AC    +++ G +V A  ++ E
Sbjct: 251 IIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLKYE 310

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAVWTAMLGACKMHKN 392
             L+     H  ++D++ + G L +A         +DVI        W+ M+     +  
Sbjct: 311 RDLI----LHNALLDMYCKCGSLEDAEALFHRMPQRDVIS-------WSTMISGLAQNGK 359

Query: 393 FDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
               + V + L+  E   P    M+  ++A
Sbjct: 360 SAEALRVFD-LMKSEGVAPNRITMVGVLFA 388



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 149/290 (51%), Gaps = 6/290 (2%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P++  + ++L A      L  +HA  +  G      + + L+      G +   +R+F  
Sbjct: 180 PNAYTFSSVLGACGTPGVLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDE 239

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           + + D  ++N++I   +++     ++  + RM  +  S +  T ++V+++C  + +L  G
Sbjct: 240 MVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAG 299

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           R VH HV    Y+ DL +  AL++ Y K  +++ A  +F RMP + V++W++MISG  QN
Sbjct: 300 RQVHAHVL--KYERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQN 357

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ--GLDVNVV 243
           G + EA+ +F+LM+  GV P+  T V VL AC+  G ++ G W +   + +  G+     
Sbjct: 358 GKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDG-WYYFRSMKKLFGIQPERE 416

Query: 244 LATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMHGYGTEA 292
               ++++  R G + +A E I DM  E + + W  ++    MH  G  A
Sbjct: 417 HHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLA 466


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/610 (36%), Positives = 348/610 (57%), Gaps = 35/610 (5%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+      ++ A  +LK L+   +V +++   G   S  M+  L+ +    G I  A++
Sbjct: 228 EPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQ 287

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF    + +  ++NT++       +++D L+    M+     P   T  + I +CA L  
Sbjct: 288 IFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGD 347

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L++G++ H +V  +G +   ++  A+++ Y K    + A KVF+ MP+K+VV WNS+I+G
Sbjct: 348 LSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAG 407

Query: 182 YEQNG-------------------------------FAKEAIGLFNLMRDFGVNPDSTTC 210
             ++G                                 +EAI LF  M++ G+  D  T 
Sbjct: 408 LVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTM 467

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           V + +AC  LG +DL +WV  +I    + V++ L T+L++M++RCG+ S A  +F  M +
Sbjct: 468 VGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEK 527

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            +V AWTA I    M G    A+ELF+ M    V+P++V FVA+L+AC+H G V +G ++
Sbjct: 528 RDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQL 587

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           F SM + +G+ P + H+ CMVDL GRAGLL EA   ++ +  E P   VW ++L AC+ H
Sbjct: 588 FWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIE-PNDVVWGSLLAACRKH 646

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
           KN +L    AE L  + PE  G +V+LSNIYA AG+   V  VR  M +KG++K  G S+
Sbjct: 647 KNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSS 706

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLR 510
           +EV    + F+ GD+SH     I   L+E+  R  EAGYVP++ + + +++E+E+E+ L 
Sbjct: 707 IEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLS 766

Query: 511 YHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
            HSEKLA+A+GL+ T  G+ IR+VKNLRMC DCHS  K +S   NREI VRD  R+H FK
Sbjct: 767 RHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFK 826

Query: 571 RGSCSCLDYW 580
            G CSC DYW
Sbjct: 827 EGFCSCRDYW 836



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 210/400 (52%), Gaps = 28/400 (7%)

Query: 21  LKPLQQVHAHLIVAGY--GRSRSMLTKLLSLVCDAGFI---TYAQRIFFCIPSPDS---- 71
           LK L+Q+H  ++  G    +  S L KL++     G +    YA+  F      D     
Sbjct: 38  LKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAF---GDDDGNMAS 94

Query: 72  -FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
            F++N LI   + A     ++L Y +M+V  I P  YTF  ++ +C+ +  L+ G  VH 
Sbjct: 95  LFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHG 154

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
            V   G + D+ V  +L++FYA+   VD+ RK+FD M +++VV+W S+I+GY     +KE
Sbjct: 155 AVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKE 214

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ LF  M + GV P+  T VCV++ACA+L D++LG+ V  +I   G++++ ++  +L++
Sbjct: 215 AVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVD 274

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MY +CG++  AR+IFD  +  N++ +  ++S Y  H + ++ + +   M   G RP+ VT
Sbjct: 275 MYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVT 334

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH----HVCMVDLFGRAGLLNEAYKF 366
            ++ ++ACA  G +  G    A     Y L  G+E        ++D++ + G    A K 
Sbjct: 335 MLSTIAACAQLGDLSVGKSSHA-----YVLRNGLEGWDNISNAIIDMYMKCGKREAACK- 388

Query: 367 VKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLL 404
              V    P   V  W +++       + +L   + + +L
Sbjct: 389 ---VFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEML 425


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/572 (37%), Positives = 339/572 (59%), Gaps = 6/572 (1%)

Query: 14  ILKAGPRLKPLQQVHAHLI-VAGYGRSRSMLTKLLSLVCDAGF---ITYAQRIFFCIPSP 69
           +LK    +   +QVHA  I ++ +  S    + +L+    +G+   + YA  IF  I  P
Sbjct: 36  LLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDP 95

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
            +F FNT+I          ++L FY  M+     P N+T+  ++K+C  L  +  G+ +H
Sbjct: 96  CTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIH 155

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
             VF  G ++D+ VQ +L+N Y +   ++++  VF+++  K+  +W+SM+S     G   
Sbjct: 156 GQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWS 215

Query: 190 EAIGLFNLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
           E + LF  M  +  +  + +  V  L ACA  G ++LG  +H F++    ++N+++ TSL
Sbjct: 216 ECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSL 275

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           ++MY +CG + KA  IF  M + N + ++AMISG  +HG G  A+ +F +M   G+ P++
Sbjct: 276 VDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDH 335

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           V +V+VL+AC+H+GLV+EG RVFA M +E  + P  EH+ C+VDL GRAGLL EA + ++
Sbjct: 336 VVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQ 395

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
            +  EK    +W   L  C++ +N +LG   A+ LL +   NPG Y+++SN+Y+     D
Sbjct: 396 SIPIEK-NDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWD 454

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
            V   R  +  KGLK+  G+S VE+  K + F   D+SHP   EIY+ L ++  + +  G
Sbjct: 455 DVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEG 514

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           Y P+    +  ++EEE++  L+ HS+K+A+AFGL+ T PG  I+I +NLRMC DCH+  K
Sbjct: 515 YSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTK 574

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            IS+   REI+VRDR RFH FK G+CSC DYW
Sbjct: 575 KISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 138/286 (48%), Gaps = 6/286 (2%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           +  +P +  Y  +LKA  RLK +   +Q+H  +   G      +   L+++    G +  
Sbjct: 126 RGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMEL 185

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCA 117
           +  +F  + S  +  +++++   +     ++ LL +R M   +N+        + + +CA
Sbjct: 186 SSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACA 245

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
           +   LNLG ++H  +  +  + ++ VQ +LV+ Y K   +D A  +F +M  ++ + +++
Sbjct: 246 NTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSA 305

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           MISG   +G  + A+ +F+ M   G+ PD    V VL AC+  G +  GR V   ++ +G
Sbjct: 306 MISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEG 365

Query: 238 -LDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMIS 281
            ++        L+++  R G + +A E    +  E N + W   +S
Sbjct: 366 KVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLS 411


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/579 (36%), Positives = 342/579 (59%), Gaps = 42/579 (7%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   Y  +LKA   L  ++   ++H+H  + G      + T L+      G +  AQR
Sbjct: 106 RPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQR 165

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   D   +N +I   S      D++    +M    I P++ T   V+ +C     
Sbjct: 166 LFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC----- 220

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
                   C ++                          ARK+FD M  ++ V+W++MI G
Sbjct: 221 -------QCLLY--------------------------ARKIFDVMGVRNEVSWSAMIGG 247

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y  +   KEA+ +F +M+  G++PD TT + VL AC+ L  +  G   H +++ +G   +
Sbjct: 248 YVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATD 307

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            ++  +LI+MY++CG +S ARE+F+ M   ++++W AMI GYG+HG G EA+ LFH + A
Sbjct: 308 TLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLA 367

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G++P+++TF+ +LS+C+H+GLV EG   F +M +++ ++P +EH +CMVD+ GRAGL++
Sbjct: 368 LGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLID 427

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA+ F++++  E P   +W+A+L AC++HKN +LG EV++ + S+ PE+ G++V+LSNIY
Sbjct: 428 EAHHFIRNMPFE-PDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIY 486

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           + AGR D    +R      GLKK  G S +E++   + F  GD+SH   ++I + L+EL+
Sbjct: 487 SAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELL 546

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              +  GY  E      ++EEEE+E  L YHSEKLA+AFG++    G  I + KNLR+C 
Sbjct: 547 VEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCG 606

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH+AIKF+++ T REI VRD  RFHHFK G+C+C D+W
Sbjct: 607 DCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 116/207 (56%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           ++++C     L   + +H H   +  ++D  V   L   Y   N V +AR++FD +P+ S
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           V+ WN +I  Y  NG    AI L++ M   GV P+  T   VL AC+ L  I+ G  +H 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
                GL+ +V + T+L++ YA+CG + +A+ +F  MS  +V+AW AMI+G  ++G   +
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSAC 318
           AV+L  +M+  G+ PN+ T V VL  C
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTC 220



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 13/192 (6%)

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
           +L AC Q   +   + +H+  +    + +  +   L  +Y  C  V  AR +FD +   +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           VI W  +I  Y  +G    A++L+H M   GVRPN  T+  VL AC+    +++G  + +
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 333 SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAVWTAMLGAC 387
             +  +GL   V     +VD + + G+L EA +       +DV+        W AM+  C
Sbjct: 134 HAKM-FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA-------WNAMIAGC 185

Query: 388 KMHKNFDLGVEV 399
            ++   D  V++
Sbjct: 186 SLYGLCDDAVQL 197


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/558 (38%), Positives = 328/558 (58%), Gaps = 6/558 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++ A  + +GY     +   L+++    G +  A+++F  + + D   +NT+I   +K 
Sbjct: 183 REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQ 242

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             +T +L  ++RM  ++  P+  TF  ++ +C +L  L  GRA+H  V   GY+SDL + 
Sbjct: 243 GAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIG 302

Query: 145 AALVNFYAK-SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             L+N Y K S++++ AR+VF+RM  + V+ WN +I  Y Q G AK+A+ +F  M+   V
Sbjct: 303 NVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENV 362

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            P+  T   VL+ACA LG    G+ VH  I       +VVL  SL+NMY RCG++     
Sbjct: 363 APNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVG 422

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +F  + + ++++W+ +I+ Y  HG+    +E F  +   G+  ++VT V+ LSAC+H G+
Sbjct: 423 VFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGM 482

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           ++EG + F SM  ++GL P   H +CMVDL  RAG L  A   + D +   P    WT++
Sbjct: 483 LKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHD-MPFLPDAVAWTSL 541

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYV-MLSNIYALAGRMDRVEVVRNIMIQKGL 442
           L  CK+H +      VA+ L  +E E+    V +LSN+YA AGR D V   RN   ++  
Sbjct: 542 LSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN---RRAA 598

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
           +K+ G S +E++   + F  GDKSHP    I   +  L  + ++AGYVP+    +H ++E
Sbjct: 599 RKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKE 658

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           EE+E  L YHSEKLA+A+GL+ T PG  + IVKNLR CVDCH+A KFIS    R+I+VRD
Sbjct: 659 EEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRD 718

Query: 563 RLRFHHFKRGSCSCLDYW 580
             RFHHF+ GSCSC DYW
Sbjct: 719 STRFHHFENGSCSCKDYW 736



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 161/288 (55%), Gaps = 4/288 (1%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A  +F  I  P+S  +  ++   ++     ++L +YRRM++  + P    F   I
Sbjct: 6   GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAI 65

Query: 114 KSCAHLSILNLGRAVHCHVFVSGY-DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
             C+    L  G+ +H  +  +   + D+ +  AL+  YA+  ++++ARK FD M  K++
Sbjct: 66  GVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTL 125

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLM---RDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           V WN++I+GY +NG  + A+ ++  M      G+ PD+ T    L AC  +GDI  GR +
Sbjct: 126 VTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREI 185

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
               V  G   + ++  +LINMY++CG++  AR++FD +   +VIAW  MISGY   G  
Sbjct: 186 EARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAA 245

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           T+A+ELF RM  +  +PN VTF+ +L+AC +   +++G  +   +R++
Sbjct: 246 TQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED 293



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 192/362 (53%), Gaps = 13/362 (3%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN-- 101
           T L+++      +  A++ F  +       +N LI   S+      +L  Y+ M+  +  
Sbjct: 98  TALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPE 157

Query: 102 -ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
            + P   TFS+ + +C  +  ++ GR +      SGY SD  VQ AL+N Y+K  +++ A
Sbjct: 158 GMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESA 217

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
           RKVFDR+ ++ V+AWN+MISGY + G A +A+ LF  M      P+  T + +L AC  L
Sbjct: 218 RKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNL 277

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC-GNVSKAREIFDMMSELNVIAWTAM 279
            D++ GR +H  +   G + ++V+   L+NMY +C  ++ +AR++F+ M   +VI W  +
Sbjct: 278 EDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNIL 337

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQ 336
           I  Y  +G   +A+++F +M+   V PN +T   VLSACA  G  ++G   H + AS R 
Sbjct: 338 IVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRC 397

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
           +  ++  +E+   +++++ R G L++       +     +   W+ ++ A   H +   G
Sbjct: 398 KADVV--LEN--SLMNMYNRCGSLDDTVGVFAAI--RDKSLVSWSTLIAAYAQHGHSRTG 451

Query: 397 VE 398
           +E
Sbjct: 452 LE 453



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 157/341 (46%), Gaps = 19/341 (5%)

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            Y K  +V  A  VF  +   + V+W  +++ + +NG  +EA+G +  M   G+ PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIV-GQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
            V  +  C+   D+  G+ +H  I+  + L+ +++L T+LI MYARC ++  AR+ FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRM---RAHGVRPNNVTFVAVLSACAHAGLVQ 325
            +  ++ W A+I+GY  +G    A++++  M      G++P+ +TF + L AC   G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 326 EGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           +G  + A ++   Y     V++   +++++ + G L  A K V D +  +   A W  M+
Sbjct: 181 QGREIEARTVASGYASDSIVQN--ALINMYSKCGSLESARK-VFDRLKNRDVIA-WNTMI 236

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
                +       +  E    + P +P       N+    G +     + ++   + + +
Sbjct: 237 SG---YAKQGAATQALELFQRMGPNDPK-----PNVVTFIGLLTACTNLEDLEQGRAIHR 288

Query: 445 HVGYSTVEVDQ--KNYLFSMGDKSHPNTNEIYQYLDELMGR 483
            V     E D    N L +M  K   +  E  Q  + +  R
Sbjct: 289 KVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR 329


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/612 (35%), Positives = 343/612 (56%), Gaps = 35/612 (5%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           N +P    +  +LK   R   LQ    +  H +  G+  +  +    + +      +  A
Sbjct: 102 NIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLA 161

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           +++F    + +   +N ++   ++      S + +  M    +SP++ T   ++ +C+ L
Sbjct: 162 RKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKL 221

Query: 120 SILNLGRAVHCH-------------------------------VFVSGYDSDLHVQAALV 148
             L  G+ ++ +                               VF +  + D+    ++V
Sbjct: 222 KDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIV 281

Query: 149 NFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
             +A    +D+ARK FD++P++  V+W +MI GY +     EA+ LF  M+   V PD  
Sbjct: 282 TGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEF 341

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           T V +L ACA LG ++LG WV  +I    +  +  +  +LI+MY +CGNV KA+++F  M
Sbjct: 342 TMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEM 401

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
              +   WTAMI G  ++G+G EA+ +F  M    + P+ +T++ VL AC HAG+V++G 
Sbjct: 402 HHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQ 461

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
             F SM  ++G+ P V H+ CMVDL GRAG L EA++ + + +  KP   VW ++LGAC+
Sbjct: 462 SFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVN-MPVKPNSIVWGSLLGACR 520

Query: 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGY 448
           +HKN  L    A+ +L +EPEN   YV+L NIYA   R + +  VR +M+++G+KK  G 
Sbjct: 521 VHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGC 580

Query: 449 STVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYS 508
           S +E++   Y F  GD+SHP + EIY  L+ +M    +AGY P++     +L EE++E +
Sbjct: 581 SLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETA 640

Query: 509 LRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHH 568
           L  HSEKLA+A+ L+ + PG+TIRIVKNLRMCVDCH   K +S A NRE+IVRD+ RFHH
Sbjct: 641 LYRHSEKLAIAYALISSGPGITIRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHH 700

Query: 569 FKRGSCSCLDYW 580
           F+ GSCSC ++W
Sbjct: 701 FRHGSCSCNNFW 712



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 214/409 (52%), Gaps = 44/409 (10%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPD 70
           ++L+    +  L+Q+H+H I  G         ++++  C  ++G + YA+++F  IP P 
Sbjct: 12  SLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPT 71

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
            F++NT+I   S+ N   + +  Y  M+ SNI P  +TF  ++K       L  G+ +  
Sbjct: 72  LFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLN 131

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
           H    G+DS+L VQ A ++ ++    VD+ARKVFD      VV WN M+SGY +    K+
Sbjct: 132 HAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKK 191

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           +  LF  M   GV+P+S T V +L+AC++L D++ G+ ++++I G  ++ N++L   LI+
Sbjct: 192 SKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLID 251

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYG-------------------------- 284
           M+A CG + +A+ +FD M   +VI+WT++++G+                           
Sbjct: 252 MFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAM 311

Query: 285 MHGY-----GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           + GY       EA+ LF  M+   V+P+  T V++L+ACAH G ++ G  V     + Y 
Sbjct: 312 IDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWV-----KTYI 366

Query: 340 LLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
               +++       ++D++ + G + +A K  K++         WTAM+
Sbjct: 367 DKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEM--HHKDKFTWTAMI 413


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/578 (37%), Positives = 328/578 (56%), Gaps = 46/578 (7%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T  + +    G I YA+ +F  +   D   +NT+I R  +     ++   +  M  SN+ 
Sbjct: 150 TGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM 209

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK- 162
           P       ++ +C     +   RA++  +  +    D H+  ALV  YA +  +D+AR+ 
Sbjct: 210 PDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREF 269

Query: 163 ------------------------------VFDRMPDKSVVAWNSMISGYEQNGFAKEAI 192
                                         +FD+   K +V W +MIS Y ++ + +EA+
Sbjct: 270 FRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEAL 329

Query: 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252
            +F  M   G+ PD  +   V++ACA LG +D  +WVH  I   GL+  + +  +LINMY
Sbjct: 330 RVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMY 389

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
           A+CG +   R++F+ M   NV++W++MI+   MHG  ++A+ LF RM+   V PN VTFV
Sbjct: 390 AKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFV 449

Query: 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372
            VL  C+H+GLV+EG ++FASM  EY + P +EH+ CMVDLFGRA LL EA     +VI 
Sbjct: 450 GVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREAL----EVIE 505

Query: 373 EKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
             P  +   +W +++ AC++H   +LG   A+ +L +EP++ G  V++SNIYA   R + 
Sbjct: 506 SMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWED 565

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
           V  +R +M +K + K  G S ++ + K++ F +GDK H  +NEIY  LDE++ + + AGY
Sbjct: 566 VRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGY 625

Query: 490 VPESESAMHELEEEEREYSLRYHSEKLALAFGLM-------RTSPGMTIRIVKNLRMCVD 542
           VP+  S + ++EEEE++  + +HSEKLAL FGLM       + S G+ IRIVKNLR+C D
Sbjct: 626 VPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGV-IRIVKNLRVCED 684

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH   K +S    REIIVRDR RFH +K G CSC DYW
Sbjct: 685 CHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 196/404 (48%), Gaps = 39/404 (9%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP-DSFLFNTLII 79
           L  ++Q+HAH++        +     LS+   +  ++YA  +F  IPSP +S +FN  + 
Sbjct: 25  LNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPPESIVFNPFLR 84

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             S+++    ++LFY+R+         ++F  ++K+ + +S L  G  +H   F      
Sbjct: 85  DLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLC 144

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D  V+   ++ YA    ++ AR VFD M  + VV WN+MI  Y + G   EA  LF  M+
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA------ 253
           D  V PD      +++AC + G++   R ++EF++   + ++  L T+L+ MYA      
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264

Query: 254 -------------------------RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
                                    +CG +  A+ IFD   + +++ WT MIS Y    Y
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             EA+ +F  M   G++P+ V+  +V+SACA+ G++ +   V + +    GL   +  + 
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN-GLESELSINN 383

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMH 390
            +++++ + G L+      +DV  + P   V  W++M+ A  MH
Sbjct: 384 ALINMYAKCGGLDAT----RDVFEKMPRRNVVSWSSMINALSMH 423



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 88/192 (45%), Gaps = 12/192 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L   + VH+ + V G     S+   L+++    G +   + +F  +P  +   ++++I  
Sbjct: 360 LDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINA 419

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS- 139
            S    ++D+L  + RM   N+ P+  TF  V+  C+H  ++  G+     +F S  D  
Sbjct: 420 LSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGK----KIFASMTDEY 475

Query: 140 ----DLHVQAALVNFYAKSNNVDVARKVFDRMPDKS-VVAWNSMISGYEQNGFAKEAIGL 194
                L     +V+ + ++N +  A +V + MP  S VV W S++S    +G  +  +G 
Sbjct: 476 NITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHG--ELELGK 533

Query: 195 FNLMRDFGVNPD 206
           F   R   + PD
Sbjct: 534 FAAKRILELEPD 545


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/542 (37%), Positives = 320/542 (59%), Gaps = 36/542 (6%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N +I       F  ++    RRM    I    YT+++VI + ++  + N+GR VH +V 
Sbjct: 242 WNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVL 301

Query: 134 VSGYDSDLH----VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS------------ 177
            +      H    V  AL+  Y +   +  AR+VFD+MP K +V+WN+            
Sbjct: 302 RTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIE 361

Query: 178 -------------------MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
                              MISG  QNGF +E + LFN M+  G+ P        +A+C+
Sbjct: 362 EANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCS 421

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
            LG +D G+ +H  I+  G D ++ +  +LI MY+RCG V  A  +F  M  ++ ++W A
Sbjct: 422 VLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNA 481

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           MI+    HG+G +A++L+ +M    + P+ +TF+ +LSAC+HAGLV+EG   F +MR  Y
Sbjct: 482 MIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCY 541

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
           G+ P  +H+  ++DL  RAG+ +EA K V + +  +P   +W A+L  C +H N +LG++
Sbjct: 542 GITPEEDHYSRLIDLLCRAGMFSEA-KNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQ 600

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458
            A+ LL + P+  G Y+ LSN+YA  G+ D V  VR +M ++G+KK  G S +EV+   +
Sbjct: 601 AADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVH 660

Query: 459 LFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLAL 518
           +F + D  HP  + +Y+YL++L+   R+ GYVP+++  +H++E E++EY+L  HSEKLA+
Sbjct: 661 VFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAV 720

Query: 519 AFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLD 578
            +G+M+   G TIR+ KNLR+C DCH+A K+IS   +REIIVRDR RFHHF+ G CSC +
Sbjct: 721 VYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSN 780

Query: 579 YW 580
           YW
Sbjct: 781 YW 782



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 115/493 (23%), Positives = 201/493 (40%), Gaps = 118/493 (23%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD-------------- 70
           + VHAH++ +G+     ++ +L+   C +  I YA+ +F  IP PD              
Sbjct: 16  RAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAA 75

Query: 71  -------------------SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA 111
                              +  +N +I   S ++    +L  + +M      P  +TFS+
Sbjct: 76  GNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSS 135

Query: 112 VIKSCAHLSILNLG-RAVHCHVFVSGYDSDLHVQAALVNFY---AKSNNVD------VAR 161
           V+ + + ++      + +HC VF  G  S   V  AL++ Y   A S  V+       AR
Sbjct: 136 VLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAAR 195

Query: 162 KVFDRMP---------------------------------DKSVVAWNSMISGYEQNGFA 188
           K+FD  P                                 D   VAWN+MISGY   GF 
Sbjct: 196 KLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFY 255

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN----VVL 244
           +EA  L   M   G+  D  T   V++A +  G  ++GR VH +++   +  +    + +
Sbjct: 256 EEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSV 315

Query: 245 ATSLINMYARCGNVSKAREIFDMM---------------------SELN----------V 273
             +LI +Y RCG + +AR +FD M                      E N          +
Sbjct: 316 NNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSL 375

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
           + WT MISG   +G+G E ++LF++M+  G+ P +  +   +++C+  G +  G ++ + 
Sbjct: 376 LTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQ 435

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP--APAVWTAMLGACKMHK 391
           + Q  G    +     ++ ++ R GL+  A      V    P      W AM+ A   H 
Sbjct: 436 IIQ-LGHDSSLSVGNALITMYSRCGLVEAA----DTVFLTMPYVDSVSWNAMIAALAQHG 490

Query: 392 NFDLGVEVAEHLL 404
           +    +++ E +L
Sbjct: 491 HGVQAIQLYEKML 503



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 140/293 (47%), Gaps = 3/293 (1%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           +LS   +A  I  A  IF  +P      +  +I   ++  F  + L  + +M +  + P 
Sbjct: 350 ILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPC 409

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           +Y ++  I SC+ L  L+ G+ +H  +   G+DS L V  AL+  Y++   V+ A  VF 
Sbjct: 410 DYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFL 469

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP    V+WN+MI+   Q+G   +AI L+  M    + PD  T + +L+AC+  G +  
Sbjct: 470 TMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKE 529

Query: 226 GR-WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGY 283
           GR +     V  G+       + LI++  R G  S+A+ + + M  E     W A+++G 
Sbjct: 530 GRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGC 589

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
            +HG     ++   R+    +   + T++++ +  A  G   E  RV   MR+
Sbjct: 590 WIHGNMELGIQAADRL-LELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRE 641



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 144/358 (40%), Gaps = 97/358 (27%)

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
           A LS  +  RAVH H+  SG+     +   L++ Y KS N+  AR +FD++P   +VA  
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 177 SMISGYEQNGFAKEAIGLFNL---------------------------------MRDFGV 203
           +M+S Y   G  K A  LFN                                  M+  G 
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGF 126

Query: 204 NPDSTTCVCVLAACAQLGDIDLG-RWVH-EFIVGQGLDVNVVLATSLINMYARCG----- 256
            PD  T   VL A + + D +   + +H E      L V  VL  +L++ Y  C      
Sbjct: 127 VPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVL-NALMSCYVSCASSPLV 185

Query: 257 -------------------------------------NVSKAREIFDMMSELNVIAWTAM 279
                                                ++  ARE+ + M++   +AW AM
Sbjct: 186 NSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAM 245

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           ISGY   G+  EA +L  RM + G++ +  T+ +V+SA ++AGL   G +V A + +   
Sbjct: 246 ISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVV 305

Query: 340 LLPGVEHHV-----CMVDLFGRAGLLNEAYKF-----VKDVIGEKPAPAVWTAMLGAC 387
              G  H V      ++ L+ R G L EA +      VKD++        W A+L  C
Sbjct: 306 QPSG--HFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVS-------WNAILSGC 354


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/589 (34%), Positives = 344/589 (58%), Gaps = 34/589 (5%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++HA ++ +G  + + +   LL        +  A  +F  +P  D   + +++   ++A
Sbjct: 22  KKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQA 81

Query: 85  NFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
                +L  +  M  ++ + P ++ ++ ++K+CA L  L LG+ VH    +S +  D  V
Sbjct: 82  KLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVV 141

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF------NL 197
           +++LV+ YAK     +AR VFD +  K+ V+W +M+SGY ++G   EA+ LF      NL
Sbjct: 142 KSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNL 201

Query: 198 -------------------------MRDFGVN-PDSTTCVCVLAACAQLGDIDLGRWVHE 231
                                    MR  GV+  D      V+ ACA L  + LG+ +H 
Sbjct: 202 YSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHG 261

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
            ++G G +  + ++ +L++MYA+C ++  AR +F+ M   +V++WT++I G   HG   E
Sbjct: 262 LVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKE 321

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           A++L+ +M    ++PN VTFV ++ AC+HAGLV +G ++F +M ++Y + P ++   C +
Sbjct: 322 ALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFL 381

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411
           DL  R+G LNEA   +K  +  KP    W A+L ACK H N ++GV +A+ LLS+    P
Sbjct: 382 DLLSRSGHLNEAEDLIK-TMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEP 440

Query: 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTN 471
             YV+LSN+YA AG+ +++  VR +M    +K+  GYS++++ +++ +F  G+  HP  +
Sbjct: 441 STYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETCHPMKD 500

Query: 472 EIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTI 531
           EI+  L EL    R+ GY+P++   +H++EE+E+E  L +HSE+ A+A+GL++  PG  I
Sbjct: 501 EIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWAVAYGLLKAVPGTVI 560

Query: 532 RIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           RIVKNLR+C DCH+ +K  S   ++EIIVRD  R+HHFK G CSC D+W
Sbjct: 561 RIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/580 (37%), Positives = 338/580 (58%), Gaps = 5/580 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + A+L AG ++  +   QQVH+ ++   +  +  +   LL        I  A++
Sbjct: 237 RPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARK 296

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F+ +P  D   +N LI   +      +SL  +R +  +      + F+ ++   A+   
Sbjct: 297 LFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLN 356

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L +GR +H    V+   S++ V  +LV+ YAK +    A ++F  +  +S V W ++ISG
Sbjct: 357 LEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISG 416

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q G  ++ + LF  M    +  DS T   +L ACA L  + LG+ +H  I+  G   N
Sbjct: 417 YVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSN 476

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V   ++L++MYA+CG++ +A ++F  M   N ++W A+IS Y  +G G  A+  F +M  
Sbjct: 477 VFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIH 536

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G++PN+V+F+++L AC+H GLV+EG + F SM Q Y L P  EH+  MVD+  R+G  +
Sbjct: 537 SGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFD 596

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP-ENPGHYVMLSNI 420
           EA K +  +  E P   +W+++L +C++HKN +L ++ A+ L +++   +   YV +SNI
Sbjct: 597 EAEKLMARMPFE-PDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNI 655

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA AG  D V  V+  + ++G++K   YS VE+ QK ++FS  D SHP T EI + LDEL
Sbjct: 656 YAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDEL 715

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
             +  E GY P+S  A+H ++EE +  SL+YHSE++A+AF L+ T  G  I ++KNLR C
Sbjct: 716 EKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRAC 775

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH+AIK IS   NREI VRD  RFHHF  GSCSC DYW
Sbjct: 776 NDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSCKDYW 815



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 180/361 (49%), Gaps = 3/361 (0%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           QVH H++  GY  +  +   LL   C    +  A  +F  +   D+  FN L+   SK  
Sbjct: 160 QVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEG 219

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
           F+ D++  + +M      PS +TF+AV+ +   +  +  G+ VH  V    +  ++ V  
Sbjct: 220 FNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVAN 279

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           AL++FY+K + +  ARK+F  MP+   +++N +I+    NG  +E++ LF  ++    + 
Sbjct: 280 ALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDR 339

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
                  +L+  A   ++++GR +H   +       V++  SL++MYA+C    +A  IF
Sbjct: 340 RQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIF 399

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
             ++  + + WTA+ISGY   G   + ++LF  M    +  ++ T+ ++L ACA+   + 
Sbjct: 400 ADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLT 459

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            G ++ + + +  G L  V     +VD++ + G + EA +  +++         W A++ 
Sbjct: 460 LGKQLHSRIIRS-GCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVS--WNALIS 516

Query: 386 A 386
           A
Sbjct: 517 A 517



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 174/372 (46%), Gaps = 14/372 (3%)

Query: 26  QVHAHLIVAGYGRSRSMLTKL-----------LSLVCDAGFITYAQRIFFCIPSPDSFLF 74
           QV  HL     G +R +  ++           +     +G ++ A+ +F  +       +
Sbjct: 48  QVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTW 107

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
             LI   ++ N   ++   +  M    + P + T + ++        +N    VH HV  
Sbjct: 108 TMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVK 167

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
            GYDS L V  +L++ Y K+ ++ +A  +F  M +K  V +N++++GY + GF  +AI L
Sbjct: 168 VGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINL 227

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           F  M+D G  P   T   VL A  Q+ DI+ G+ VH F+V      NV +A +L++ Y++
Sbjct: 228 FFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSK 287

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
              + +AR++F  M E++ I++  +I+    +G   E++ELF  ++          F  +
Sbjct: 288 HDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATL 347

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           LS  A++  ++ G ++  S       +  V     +VD++ +     EA +   D+  + 
Sbjct: 348 LSIAANSLNLEMGRQIH-SQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQS 406

Query: 375 PAPAVWTAMLGA 386
             P  WTA++  
Sbjct: 407 SVP--WTALISG 416



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 4/234 (1%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           MI +   P+   F+  +++  HL   +LG A    +F      ++     ++  Y KS N
Sbjct: 33  MIKTGFDPNTCRFNFQVQT--HLQRGDLGAARK--LFDEMPHKNVISTNTMIMGYLKSGN 88

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           +  AR +FD M  +SVV W  +I GY Q+    EA  LF  M   G+ PD  T   +L+ 
Sbjct: 89  LSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSG 148

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
             +   ++    VH  +V  G D  +++  SL++ Y +  ++  A  +F  M+E + + +
Sbjct: 149 FTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTF 208

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            A+++GY   G+  +A+ LF +M+  G RP+  TF AVL+A      ++ G +V
Sbjct: 209 NALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQV 262


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/540 (37%), Positives = 327/540 (60%), Gaps = 5/540 (0%)

Query: 41  SMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS 100
           +M+T LL       FI  A+++F  +P  DS  + T+I   ++     +++  ++ M + 
Sbjct: 209 TMITGLLR----CRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIE 264

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
                 +TF +V+ +C     L+ G+ +H ++  + Y  ++ V +AL++ Y K  NV  A
Sbjct: 265 GFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYA 324

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
             VF +M  K+V++W +M+ GY QNG+++EA+ +F  M+   ++PD  T   V+++CA L
Sbjct: 325 EAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANL 384

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             ++ G   H   +  GL   V ++ +LI +Y +CG++  A ++F  M   + ++WTA++
Sbjct: 385 ASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALV 444

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           SGY   G   E + LF  M AHG+ P+ VTFV VLSAC+ AGLV++G+  F  M +E+ +
Sbjct: 445 SGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRI 504

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P  +H+ CM+DL  RAG L EA  F+   +   P    W  +L +C+++ N ++G   A
Sbjct: 505 TPIPDHYTCMIDLLSRAGRLEEAKNFINQ-MPFSPDAIGWATLLSSCRLNGNLEIGKWAA 563

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           E L  +EP+NP  Y++LS+IYA  G+ D V  +R  M + G+KK  G+S ++   K ++F
Sbjct: 564 ESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIF 623

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
           S  D+S P +++IY  L+ L  +  E GYVP+    +H++E+ E+   L +HSEKLA+AF
Sbjct: 624 SADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSEKLAIAF 683

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           GL+    G+ IR+VKNLR+C DCH+A K+IS  T REI+VRD +RFH FK G CSC D+W
Sbjct: 684 GLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 189/373 (50%), Gaps = 35/373 (9%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISP 104
           LLS     G++   QR+F  +P+ D   +N+L+   +     ++S+  Y  M+   +++ 
Sbjct: 77  LLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNL 136

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           +  TFS ++   ++   ++LGR +H  +F  GY S L V + LV+ YAK+  ++ A ++F
Sbjct: 137 NRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIF 196

Query: 165 DRMPDKSVV-------------------------------AWNSMISGYEQNGFAKEAIG 193
           + +P+K++V                               +W ++I+G  QNG  KEA+ 
Sbjct: 197 EEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVD 256

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
            F  M   G   D  T   VL AC     +D G+ +H +I+      N+ + ++L++MY 
Sbjct: 257 KFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYC 316

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +C NV  A  +F  M   NVI+WTAM+ GYG +GY  EAV +F  M+ + + P++ T  +
Sbjct: 317 KCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGS 376

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           V+S+CA+   ++EG + F       GL+  V     ++ L+G+ G L  A++   ++  +
Sbjct: 377 VISSCANLASLEEGAQ-FHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEM--K 433

Query: 374 KPAPAVWTAMLGA 386
                 WTA++  
Sbjct: 434 IRDEVSWTALVSG 446



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 154/317 (48%), Gaps = 9/317 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+HA++I   Y  +  + + LL + C    + YA+ +F  +   +   +  +++   + 
Sbjct: 290 KQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQN 349

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            +S +++  +  M  + I P ++T  +VI SCA+L+ L  G   H     SG    + V 
Sbjct: 350 GYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVS 409

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL+  Y K  +++ A ++F  M  +  V+W +++SGY Q G A E I LF  M   G+ 
Sbjct: 410 NALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIV 469

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV-LATSLINMYARCGNVSKARE 263
           PD  T V VL+AC++ G ++ G    E +V +     +    T +I++ +R G + +A+ 
Sbjct: 470 PDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKN 529

Query: 264 IFDMMS-ELNVIAWTAMISGYGMHG---YGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
             + M    + I W  ++S   ++G    G  A E  H++       N  +++ + S  A
Sbjct: 530 FINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQ----NPASYILLSSIYA 585

Query: 320 HAGLVQEGHRVFASMRQ 336
             G   +  ++   MR+
Sbjct: 586 AKGKWDDVAKLRKGMRE 602



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 65/300 (21%)

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
           S SNY ++A +K C         + +HC +  +  + +  +   L+N Y K  ++  AR 
Sbjct: 3   SSSNY-YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARN 61

Query: 163 VFDRMPDKSVVAWNSMI-------------------------------SGYEQNGFAKEA 191
           VFD +P  ++ +WN+++                               SGY  NG   E+
Sbjct: 62  VFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISES 121

Query: 192 IGLFNLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           + ++N+M +D  VN +  T   +L   +  G +DLGR +H  I   G    + + + L++
Sbjct: 122 VRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVD 181

Query: 251 MYA-------------------------------RCGNVSKAREIFDMMSELNVIAWTAM 279
           MYA                               RC  + +A ++FD M E + I+WT +
Sbjct: 182 MYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTI 241

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEY 338
           I+G   +G   EAV+ F  M   G   +  TF +VL+AC     + EG ++ A  +R +Y
Sbjct: 242 ITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDY 301


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/578 (35%), Positives = 338/578 (58%), Gaps = 5/578 (0%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    Y + + A  + K L+   ++HAHL  + +     +   L+ + C    +  A+ +
Sbjct: 49  PTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNV 108

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   D   + +LI   ++ +   +++     M+     P+ +TF++++K+    +  
Sbjct: 109 FDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             GR +H      G+  D++V +AL++ YA+   +D+A  VFD++  K+ V+WN++ISG+
Sbjct: 169 GTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            + G  + A+  F  M   G      T   V ++ A+LG ++ G+WVH  ++     +  
Sbjct: 229 ARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTA 288

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +  +L++MYA+ G++  AR++FD +   +++ W +M++ +  +G G EAV  F  MR  
Sbjct: 289 FVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV  N +TF+ +L+AC+H GLV+EG R F  M +EY L P ++H+V +V L GRAGLLN 
Sbjct: 349 GVYLNQITFLCILTACSHGGLVKEGKRYF-EMMKEYDLEPEIDHYVTVVALLGRAGLLNY 407

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A  F+  +  E P  AVW A+L AC+MHKN  +G   A+H+  ++P++ G  V+L NIYA
Sbjct: 408 ALVFIFKMPME-PTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYA 466

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             G+ D    VR +M   G+KK    S VE++   ++F   D +HP   EIY+   E+  
Sbjct: 467 STGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISK 526

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           + R+ GYVP+ +  +  ++++E+E +L+YHSEKLALAF L+    G TIRI+KN+R+C D
Sbjct: 527 KIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGD 586

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CHSA K+IS    REI+VRD  RFHHF  GSCSC DYW
Sbjct: 587 CHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 151/305 (49%), Gaps = 12/305 (3%)

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           ++P+   + + I +CA    L   R +H H+  S +  D  +  +L++ Y K  +V  AR
Sbjct: 47  LAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDAR 106

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
            VFD+M  K +V+W S+I+GY QN    EAIGL   M      P+  T   +L A     
Sbjct: 107 NVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYA 166

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           D   GR +H   V  G   +V + ++L++MYARCG +  A  +FD +   N ++W A+IS
Sbjct: 167 DSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALIS 226

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM---RQEY 338
           G+   G G  A+  F  M  +G    + T+ +V S+ A  G +++G  V A +   RQ+ 
Sbjct: 227 GFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKL 286

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
               G      ++D++ ++G + +A K V D +  K     W +ML A      + LG E
Sbjct: 287 TAFVG----NTLLDMYAKSGSMIDARK-VFDRVDNKDL-VTWNSMLTA---FAQYGLGKE 337

Query: 399 VAEHL 403
              H 
Sbjct: 338 AVSHF 342


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/576 (37%), Positives = 336/576 (58%), Gaps = 10/576 (1%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP---D 70
           I   G  +  ++Q+H  ++V G+    S+   +L+     GF++ A+R+F  +      D
Sbjct: 148 ITACGDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRD 207

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
              +N +I+   +     +++  +R M+   +    +T ++V+ +   +  L  GR  H 
Sbjct: 208 EVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHG 267

Query: 131 HVFVSGYDSDLHVQAALVNFYAK-SNNVDVARKVFDRMPDKSVVAWNSMISGYE-QNGFA 188
            +  SG+  + HV + L++ Y+K + ++   RKVF+ +    +V WN+MISG+      +
Sbjct: 268 MMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLS 327

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN-VVLATS 247
           ++ +  F  M+  G  PD  + VCV +AC+ L    LG+ VH   +   +  N V +  +
Sbjct: 328 EDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNA 387

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L+ MY++CGNV  AR +FD M E N ++  +MI+GY  HG   E++ LF  M    + PN
Sbjct: 388 LVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPN 447

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           ++TF+AVLSAC H G V+EG + F  M++ + + P  EH+ CM+DL GRAG L EA + +
Sbjct: 448 SITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERII 507

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
            + +   P    W  +LGAC+ H N +L V+ A   L +EP N   YVMLSN+YA A R 
Sbjct: 508 -ETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARW 566

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           +    V+ +M ++G+KK  G S +E+D+K ++F   D SHP   EI+ Y+ +++ + ++A
Sbjct: 567 EEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQA 626

Query: 488 GYVPESESAM---HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
           GYVP+   A+    E+E +ERE  L YHSEKLA+AFGL+ T  G+ I +VKNLR+C DCH
Sbjct: 627 GYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTEEGVPILVVKNLRICGDCH 686

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +A+K IS  T REI VRD  RFH FK G CSC DYW
Sbjct: 687 NAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 194/426 (45%), Gaps = 48/426 (11%)

Query: 55  FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
            I  A+R+F  IP PD   +NTLI   +       +L  +  +    +    +T S VI 
Sbjct: 90  LIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVIT 149

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KS 171
           +C     + L R +HC V V G+D    V  A++  Y++   +  AR+VF  M +   + 
Sbjct: 150 ACG--DDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRD 207

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
            V+WN+MI    Q+    EA+GLF  M   G+  D  T   VL A   + D+  GR  H 
Sbjct: 208 EVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHG 267

Query: 232 FIVGQGLDVNVVLATSLINMYARC-GNVSKAREIFDMMSELNVIAWTAMISGYGMH-GYG 289
            ++  G   N  + + LI++Y++C G++ + R++F+ ++  +++ W  MISG+ ++    
Sbjct: 268 MMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLS 327

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA----------------- 332
            + +  F  M+ +G RP++ +FV V SAC++      G +V A                 
Sbjct: 328 EDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNA 387

Query: 333 ------------SMRQEYGLLPGVEHHVC----MVDLFGRAGLLNEAYKFVKDVIGEKPA 376
                         R+ +  +P  EH+      M+  + + G+  E+ +  + ++ +  A
Sbjct: 388 LVAMYSKCGNVHDARRVFDTMP--EHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIA 445

Query: 377 P--AVWTAMLGACKMHKNFDLGVE---VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
           P    + A+L AC      + G +   + +    +EPE   HY  + ++   AG++   E
Sbjct: 446 PNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAE-HYSCMIDLLGRAGKLKEAE 504

Query: 432 VVRNIM 437
            +   M
Sbjct: 505 RIIETM 510



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 150/308 (48%), Gaps = 21/308 (6%)

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
           L+++ +I  +   SN+ F+ +   C   S+ N   + H   + + +  +      L+N Y
Sbjct: 34  LYFKSLIPPSTYLSNH-FTLLYSKCG--SLHNAQTSFHLTQYPNVFSYN-----TLINAY 85

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
           AK + + +AR+VFD +P   +V++N++I+ Y   G     + LF  +R+  +  D  T  
Sbjct: 86  AKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLS 145

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE- 270
            V+ AC    D+ L R +H F+V  G D    +  +++  Y+R G +S+AR +F  M E 
Sbjct: 146 GVITACGD--DVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEG 203

Query: 271 --LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA--CAHAGLVQE 326
              + ++W AMI   G H  G EAV LF  M   G++ +  T  +VL+A  C    LV  
Sbjct: 204 GGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCV-KDLV-- 260

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGR-AGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           G R F  M  + G          ++DL+ + AG + E  K  +++    P   +W  M+ 
Sbjct: 261 GGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITA--PDLVLWNTMIS 318

Query: 386 ACKMHKNF 393
              ++++ 
Sbjct: 319 GFSLYEDL 326



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 53/220 (24%)

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK------------ 260
           +L AC    D+  G+ +H       +  +  L+     +Y++CG++              
Sbjct: 15  LLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLTQYPN 74

Query: 261 -------------------AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
                              AR +FD + + +++++  +I+ Y   G     + LF  +R 
Sbjct: 75  VFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRE 134

Query: 302 HGVRPNNVTFVAVLSACA-HAGLVQE--------GHRVFASMRQEYGLLPGVEHHVCMVD 352
             +  +  T   V++AC    GLV++        GH  +AS+               ++ 
Sbjct: 135 LRLGLDGFTLSGVITACGDDVGLVRQLHCFVVVCGHDCYASVNNA------------VLA 182

Query: 353 LFGRAGLLNEAYKFVKDV-IGEKPAPAVWTAMLGACKMHK 391
            + R G L+EA +  +++  G       W AM+ AC  H+
Sbjct: 183 CYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHR 222


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/555 (39%), Positives = 326/555 (58%), Gaps = 37/555 (6%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H      G   +  +   L+S+    GF++ A+ +   +   D   +N+L+   ++ 
Sbjct: 161 KKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQN 220

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               D+L   R M    IS    T ++++ + ++ +                        
Sbjct: 221 QRFDDALEVCREMESVKISHDAGTMASLLPAVSNTT------------------------ 256

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
                    + NV   + +F +M  KS+V+WN MI  Y +N    EA+ L++ M   G  
Sbjct: 257 ---------TENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFE 307

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD+ +   VL AC     + LG+ +H +I  + L  N++L  +LI+MYA+CG + +AR++
Sbjct: 308 PDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDV 367

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ M   +V++WTAMIS YG  G G +AV LF +M+  G+ P+++ FV  L+AC+HAGL+
Sbjct: 368 FENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLL 427

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           +EG   F  M   Y + P +EH  CMVDL GRAG + EAYKF++++  E P   VW A+L
Sbjct: 428 EEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPME-PNERVWGALL 486

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GAC++H N D+G+  A+ L  + PE  G+YV+LSNIYA AGR + V  +RNIM  KGLKK
Sbjct: 487 GACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKK 546

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
           + G S VEV++  + F +GD+SHP + EIY+ LD L+ + +E GYVP+SESA+H++EEE+
Sbjct: 547 NPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEED 606

Query: 505 REYSLRYHSEKLALAFGLMRT---SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
           +E  L  HSEKLA+ F LM T        IRI KNLR+C DCH A K IS  T+REII+R
Sbjct: 607 KETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIR 666

Query: 562 DRLRFHHFKRGSCSC 576
           D  RFH F+ G CSC
Sbjct: 667 DTNRFHVFRFGVCSC 681



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 155/316 (49%), Gaps = 16/316 (5%)

Query: 126 RAVHCHVFVSG--YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
           R VH  +      Y+S L V+  L+  YA   +V  ARKVFD +P+++V+  N MI  Y 
Sbjct: 60  RTVHSRIISEDLRYNSSLGVK--LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYV 117

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
            NGF +E I +F  M    V PD  T  CVL AC+  G+I +G+ +H      GL   + 
Sbjct: 118 NNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLF 177

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           +   L++MY +CG +S+AR + D MS  +V++W ++++GY  +    +A+E+   M +  
Sbjct: 178 VGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVK 237

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           +  +  T  ++L A ++     E       M  + G    V  +V M+ ++ +  +  EA
Sbjct: 238 ISHDAGTMASLLPAVSNT--TTENVMYVKDMFFKMGKKSLVSWNV-MIGVYMKNAMPVEA 294

Query: 364 YKFVK--DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN-- 419
            +     +  G +P     T++L AC       LG ++  +   +E +     ++L N  
Sbjct: 295 VELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGY---IERKKLIPNLLLENAL 351

Query: 420 --IYALAGRMDRVEVV 433
             +YA  G +DR   V
Sbjct: 352 IDMYAKCGCLDRARDV 367


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/579 (40%), Positives = 336/579 (58%), Gaps = 31/579 (5%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSML---TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTL 77
           +  L+Q+HA  +   Y    + L    K+L L      + YA R+F  I +  SF++NTL
Sbjct: 42  MSQLKQLHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTL 101

Query: 78  IIRNSKANFS--TDSLLFYRRMIVSNIS-PSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           I R    + S   ++ + YR+M+    S P  +TF  V+K+CA++  L+ G+ VHC +  
Sbjct: 102 I-RACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQIVK 160

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
            G+  D++V   L++FY     +D+ARKVFD MP++S+V+WNSMI    + G    A+ L
Sbjct: 161 HGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQL 220

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDV--NVVLATSLINM 251
           F  M+     PD  T   VL+ACA LG + LG W H F++    +DV  +V++  SLI M
Sbjct: 221 FRDMQK-SFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEM 279

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG--VRPNNV 309
           Y +CG++  A ++F  M + ++ +W AMI G+  HG   EA+  F  M   G  V+PN+V
Sbjct: 280 YCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSV 339

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           TFVA+L AC H G+V +G + F  M +EYG+ P +EH+ C++DL  RAG + EA   V  
Sbjct: 340 TFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLARAGYITEAIDMVMS 399

Query: 370 VIGEKPAPAVWTAMLGAC-KMHKNFDLGVEVAEHLLSVEPEN-------PGHYVMLSNIY 421
            +  KP   +W ++L AC K   + +L  E+A +++    +N        G YV+LS +Y
Sbjct: 400 -MPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQSSNSNCSGAYVLLSRVY 458

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A A R + V +VR +M   G++K  G S++E++  +  F  GD SHP T +IYQ L  + 
Sbjct: 459 ASANRWNDVGIVRKLMSDHGIRKEPGCSSIEINGISNEFFAGDTSHPQTKQIYQQLKVID 518

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            R R         S +    +  +EYSLR HSE+LA+AFGL+   P   IRI KNLR+C 
Sbjct: 519 DRLR---------SIVDATNDSSKEYSLRLHSERLAIAFGLISLPPQTPIRIFKNLRVCS 569

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH   K IS   N EIIVRDR+RFHHFK GSCSCLDYW
Sbjct: 570 DCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 608



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 130/278 (46%), Gaps = 7/278 (2%)

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
           ++ ++C+ +S L    A           + L +   ++   +  ++V+ A +VFD + + 
Sbjct: 34  SLAETCSDMSQLKQLHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENH 93

Query: 171 SVVAWNSMISGYEQNGFAK-EAIGLFNLMRDFGVN-PDSTTCVCVLAACAQLGDIDLGRW 228
           S   WN++I     +   K EA  L+  M + G + PD  T   VL ACA +  +  G+ 
Sbjct: 94  SSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQ 153

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           VH  IV  G   +V +   LI+ Y  CG +  AR++FD M E ++++W +MI      G 
Sbjct: 154 VHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGE 213

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG--HRVFASMRQEYGLLPGVEH 346
              A++LF  M+     P+  T  +VLSACA  G +  G    VF     +  +   V  
Sbjct: 214 YDSALQLFRDMQK-SFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLI 272

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
              +++++ + G L  A +  + +   K   A W AM+
Sbjct: 273 KNSLIEMYCKCGSLRMAEQVFQGM--RKHDLASWNAMI 308


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/529 (40%), Positives = 318/529 (60%), Gaps = 8/529 (1%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV---SNISPSNYTFSAVIKS 115
           A+ +F  +P  D F ++ L+   ++      +L  YRRM     ++ + + +T S+ + +
Sbjct: 114 ARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAA 173

Query: 116 CAHLSILNLGRAVHCHVFVSGYDS---DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
            A       GR +HCHV   G D+   D  + +AL + YAK   VD AR+VFDRMP +  
Sbjct: 174 AAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDA 233

Query: 173 VAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           V+W +M+  Y   G   E   LF +++R  GV P+  T   VL ACAQ      GR VH 
Sbjct: 234 VSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHG 293

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
            +   G   +    ++L+ MY++CG++  A  +F+ M++ ++++WTA+ISGY  +G   E
Sbjct: 294 RMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEE 353

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           A+  F      G++P++VTFV VLSACAHAGLV +G  +F S++++Y +    +H+ C++
Sbjct: 354 ALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVI 413

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411
           DL  R+G    A K + + +  KP   +W ++LG C++HKN  L    AE L  +EPENP
Sbjct: 414 DLLSRSGQFERAEKMIGN-MAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENP 472

Query: 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTN 471
             YV L+NIYA  G  D VE VR IM  KG+ K    S +EV ++ ++F +GDKSHP  +
Sbjct: 473 ATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKAD 532

Query: 472 EIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTI 531
           EIY  L +L  +  E GYV + E  +H++E+E++E  + YHSE+LA+AFG++ T  G  I
Sbjct: 533 EIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEGSPI 592

Query: 532 RIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           ++ KNLR+C DCH+AIK IS    R+IIVRD  RFHHFK G CSC DYW
Sbjct: 593 KVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 125/288 (43%), Gaps = 29/288 (10%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   Y  +L+A  +       +QVH  +  +G G S    + LL +    G +  A R
Sbjct: 266 RPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVR 325

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +  PD   +  +I   ++     ++L ++   + S I P + TF  V+ +CAH  +
Sbjct: 326 VFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGL 385

Query: 122 LNLGRAVHCHVFVSGY--DSDLHVQAALVNFYAKSNNVDVARKVFDRM---PDKSVVAWN 176
           ++ G  +  H     Y  +      A +++  ++S   + A K+   M   P+K +  W 
Sbjct: 386 VDKGLEIF-HSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFL--WA 442

Query: 177 SMISG---YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC-AQLGDIDLGRWVHEF 232
           S++ G   ++  G A+ A         F + P++      LA   A +G  D    V   
Sbjct: 443 SLLGGCRIHKNVGLARRAAEAL-----FEIEPENPATYVTLANIYASVGLFDEVEDVRRI 497

Query: 233 IVGQGLDVNVVLATSLINMYAR-----CGNVS--KAREIFDMMSELNV 273
           +  +G  +  + A+S I +  R      G+ S  KA EI+ ++ +L V
Sbjct: 498 MESKG--ITKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYV 543



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 247 SLINMYARCG-NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +LI+  +R   ++  ARE+FD M + +  AW+A++SGY  HG    A+ L+ RM+
Sbjct: 99  TLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQ 153


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/564 (39%), Positives = 332/564 (58%), Gaps = 11/564 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + +HA  +  G  R   +   LL +    G    A+ +F  IP  ++  +NT+I  +S+ 
Sbjct: 343 RMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGSSQK 401

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA----HLSILNLGRAVHCHVFVSGYDSD 140
                +L  ++RM +  ++P   T+  ++++ A        +  GR +H  +   GY S+
Sbjct: 402 GQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASE 461

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDR--MPDK-SVVAWNSMISGYEQNGFAKEAIGLFNL 197
             +  A+V  YA    +D A   F R  M D+  VV+WN++IS   Q+G  K A+G F  
Sbjct: 462 PAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRR 521

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M   GV P+  TCV VL ACA    +  G  VH+ +   G++ NV +AT+L +MY RCG+
Sbjct: 522 MDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGS 581

Query: 258 VSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
           +  AREIF+ ++ E +V+ + AMI+ Y  +G   EA++LF RM+  G RP+  +FV+VLS
Sbjct: 582 LESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLS 641

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC+H GL  EG  +F SMRQ YG+ P  +H+ C VD+ GRAG L +A + ++  +  KP 
Sbjct: 642 ACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIR-CMDVKPT 700

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
             VW  +LGAC+ +++ D G      +  ++P +   YV+LSNI A AG+ D    VR  
Sbjct: 701 VLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTE 760

Query: 437 MIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESA 496
           M  +GL+K  G S +E+  + + F  GD+SHP + EIY+ L+ L    RE GYVP++   
Sbjct: 761 MESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLV 820

Query: 497 MHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNR 556
           + +++E E+E  L  HSE+LA+A G+M +S   T+R++KNLR+C DCH+A KFIS   N+
Sbjct: 821 LRKVDEAEKERLLCQHSERLAIALGVMSSSTD-TVRVMKNLRVCEDCHNATKFISKIVNK 879

Query: 557 EIIVRDRLRFHHFKRGSCSCLDYW 580
           EI+VRD  RFHHF  GSCSC DYW
Sbjct: 880 EIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 192/409 (46%), Gaps = 24/409 (5%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L   +++HA ++    G    +   LL L      +   + +F  +   D   + T+I  
Sbjct: 45  LSQGRRIHARIV--SLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            ++   +  ++  + RM    +     TF AV+K+CA L  L+ GR++H  +  SG +  
Sbjct: 103 YTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGK 162

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
             +   L++ Y     V  A  +F+RM ++ +V+WN+ I+   Q+G    A+ LF  M+ 
Sbjct: 163 SVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQL 221

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            GV P   T V  L+ CA+   I   R +H  +   GL+  +V++T+L + YAR G++ +
Sbjct: 222 EGVRPARITLVITLSVCAK---IRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQ 278

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A+E+FD  +E +V++W AM+  Y  HG+ +EA  LF RM   G+ P+ VT V   + C+ 
Sbjct: 279 AKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSS 338

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
                     F  M     L  G++  +     ++D++ R G   EA    + +    P 
Sbjct: 339 L--------RFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGI----PG 386

Query: 377 PAV-WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
            AV W  M+            +E+ +  + +E   P     L+ + A+A
Sbjct: 387 NAVSWNTMIAGSSQKGQMKRALELFQR-MQLEGMAPVRATYLNLLEAVA 434



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 151/279 (54%), Gaps = 9/279 (3%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           ++++     +L+ GR +H  +   G + +L     L+  Y K  ++    +VF R+  + 
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLGLEEELGNH--LLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
             +W ++I+ Y ++G AK AI +F+ M+  GV  D+ T + VL ACA+LGD+  GR +H 
Sbjct: 93  EASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHA 152

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
           +IV  GL+   VLA  L+++Y  CG V+ A  +F+ M E ++++W A I+     G    
Sbjct: 153 WIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDM 211

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           A+ELF RM+  GVRP  +T V  LS CA    +++  R   S+ +E GL   +     + 
Sbjct: 212 ALELFQRMQLEGVRPARITLVITLSVCAK---IRQA-RAIHSIVRESGLEQTLVVSTALA 267

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
             + R G L++A K V D   E+   + W AMLGA   H
Sbjct: 268 SAYARLGHLDQA-KEVFDRAAERDVVS-WNAMLGAYAQH 304


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/576 (37%), Positives = 335/576 (58%), Gaps = 10/576 (1%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP---D 70
           I+  G  +  ++Q+H  ++V GY    S+   +L+     GF+  A+R+F  +      D
Sbjct: 148 IIACGDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRD 207

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
              +N +I+   +     +++  +R M+   +    +T ++V+ +   +  L  G   H 
Sbjct: 208 EVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHG 267

Query: 131 HVFVSGYDSDLHVQAALVNFYAK-SNNVDVARKVFDRMPDKSVVAWNSMISGYEQ-NGFA 188
            +  SG+  + HV + L++ Y+K +  +   RKVF+ +    +V WN+MISG+ Q    +
Sbjct: 268 MMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLS 327

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN-VVLATS 247
           ++ I  F  M+  G +PD  + VCV +AC+ L    +G+ VH   +   +  N V +  +
Sbjct: 328 EDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNA 387

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L+ MY++CGNV  AR +FD M E N+++  +MI+GY  HG   E++ LF  M    + PN
Sbjct: 388 LVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPN 447

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            +TF+AVLSAC H G V+EG + F  M++ + + P  EH+ CM+DL GRAG L EA + +
Sbjct: 448 TITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERII 507

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
            + +   P    W  +LGAC+ H N +L V+ A   L +EP N   YVMLSN+YA A R 
Sbjct: 508 -ETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARW 566

Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
           +    V+ +M ++G+KK  G S +E+D+K ++F   D SHP   EI+ Y+ E++ + ++A
Sbjct: 567 EEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQA 626

Query: 488 GYVPESESAM---HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
           GYVP+   A+    E+E +E+E  L YHSEKLA+AFGL+ T   + I +VKNLR+C DCH
Sbjct: 627 GYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCH 686

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +AIK IS  T REI VRD  RFH FK G CSC DYW
Sbjct: 687 NAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 190/426 (44%), Gaps = 48/426 (11%)

Query: 55  FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
            I  A+++F  IP PD   +NTLI   +       +L  +  +         +T S VI 
Sbjct: 90  LIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVII 149

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KS 171
           +C     + L R +HC V V GYD    V  A++  Y++   ++ AR+VF  M +   + 
Sbjct: 150 ACG--DDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRD 207

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
            V+WN+MI    Q+    EA+ LF  M   G+  D  T   VL A   + D+  G   H 
Sbjct: 208 EVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHG 267

Query: 232 FIVGQGLDVNVVLATSLINMYARC-GNVSKAREIFDMMSELNVIAWTAMISGYGMH-GYG 289
            ++  G   N  + + LI++Y++C G + + R++F+ ++  +++ W  MISG+  +    
Sbjct: 268 MMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLS 327

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA----------------- 332
            + +  F  M+ +G  P++ +FV V SAC++      G +V A                 
Sbjct: 328 EDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNA 387

Query: 333 ------------SMRQEYGLLPGVEHHVC----MVDLFGRAGLLNEAYKFVKDVIGEKPA 376
                         R+ +  +P  EH++     M+  + + G+  E+ +  + ++ +  A
Sbjct: 388 LVAMYSKCGNVHDARRVFDTMP--EHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIA 445

Query: 377 PAVWT--AMLGACKMHKNFDLGVE---VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
           P   T  A+L AC      + G +   + +    +EPE   HY  + ++   AG++   E
Sbjct: 446 PNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAE-HYSCMIDLLGRAGKLKEAE 504

Query: 432 VVRNIM 437
            +   M
Sbjct: 505 RIIETM 510



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
           L+++ +I  +   SN+ F+ +   C  L        +  +  V  Y++       L+N Y
Sbjct: 34  LYFKSLIPPSTYLSNH-FTLLYSKCGSLHNAQTSFDLTQYPNVFSYNT-------LINAY 85

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
           AK + + +AR+VFD +P   +V++N++I+ Y   G  + A+ LF  +R+     D  T  
Sbjct: 86  AKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLS 145

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE- 270
            V+ AC    D+ L R +H F+V  G D    +  +++  Y+R G +++AR +F  M E 
Sbjct: 146 GVIIACGD--DVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEG 203

Query: 271 --LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
              + ++W AMI   G H  G EAVELF  M   G++ +  T  +VL+A      +  G 
Sbjct: 204 GGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGM 263

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGR-AGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
           + F  M  + G          ++DL+ + AG + E  K  +++    P   +W  M+   
Sbjct: 264 Q-FHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAA--PDLVLWNTMISGF 320

Query: 388 KMHKNF 393
             +++ 
Sbjct: 321 SQYEDL 326



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 40/222 (18%)

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
           +L AC    D+  G+ +H       +  +  L+     +Y++CG++  A+  FD+    N
Sbjct: 15  LLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLTQYPN 74

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           V ++  +I+ Y  H     A ++F  +     +P+ V++  +++A A  G  +   R+FA
Sbjct: 75  VFSYNTLINAYAKHSLIHLARQVFDEIP----QPDIVSYNTLIAAYADRGECRPALRLFA 130

Query: 333 SMRQ-EYGL----LPGV------------EHH----VCMVDLFG-----------RAGLL 360
            +R+  +GL    L GV            + H    VC  D +            R G L
Sbjct: 131 EVRELRFGLDGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFL 190

Query: 361 NEAYKFVKDV-IGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           NEA +  +++  G       W AM+ AC  H+    G+E  E
Sbjct: 191 NEARRVFREMGEGGGRDEVSWNAMIVACGQHRE---GLEAVE 229


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/581 (36%), Positives = 335/581 (57%), Gaps = 10/581 (1%)

Query: 6   PHSPAYEAILKAGP---RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   Y  IL+      +++  +Q+H+  I  G+     +   L+ +    G +  A++I
Sbjct: 344 PNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKI 403

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
              +   D   + ++I    + +F  ++L  ++ M    + P N   ++   +CA +  +
Sbjct: 404 LEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAM 463

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G  +H  V+VSGY +D+ +   LVN YA+    + A  +F  +  K  + WN +ISG+
Sbjct: 464 RQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGF 523

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q+   K+A+ +F  M   G   +  T +  ++A A L DI  G+ VH   V  G     
Sbjct: 524 GQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSET 583

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +A +LI++Y +CG++  A+ IF  MS  N ++W  +I+    HG G EA++LF +M+  
Sbjct: 584 EVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQE 643

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G++PN+VTF+ VL+AC+H GLV+EG   F SM   YGL P  +H+ C+VD+ GRAG L+ 
Sbjct: 644 GLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDR 703

Query: 363 AYKFVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           A +FV     E P  A   +W  +L ACK+HKN ++G   A+HLL +EP +   YV+LSN
Sbjct: 704 ARRFVD----EMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSN 759

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
            YA+ G+    + VR +M  +G++K  G S +EV    + F +GD+ HP +++IY++L E
Sbjct: 760 AYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSE 819

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           L  R  + GY  E+ +  HE E+E+++ +   HSEKLA+AFGLM   P + +R++KNLR+
Sbjct: 820 LNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRV 879

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCHS +K  S  T REI++RD  RFHHF  GSCSC DYW
Sbjct: 880 CDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 104/405 (25%), Positives = 204/405 (50%), Gaps = 5/405 (1%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           A +A    G R   + ++HA  +V G G  R +   L+ L    G +  A+++F  + S 
Sbjct: 48  ALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSR 107

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   +  ++   +++    ++   Y +M  + + P+ Y  S+V+ +C    +   GR +H
Sbjct: 108 DHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIH 167

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
             V+   + S+  V  AL+  Y    +  +A +VF  M     V +N++ISG+ Q G  +
Sbjct: 168 AQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGE 227

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
            A+ +F+ M+  G+ PD  T   +LAACA +GD+  G+ +H +++  G+  + +   SL+
Sbjct: 228 CALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLL 287

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           ++Y +CG++  A +IF++    NV+ W  M+  YG      ++ E+F +M+A G+ PN  
Sbjct: 288 DLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQF 347

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           T+  +L  C   G ++ G ++  S+  + G    +     ++D++ + G L++A K ++ 
Sbjct: 348 TYPCILRTCTCTGQIELGEQIH-SLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEM 406

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL--LSVEPENPG 412
           +  EK     WT+M+     H   +  +   + +    V P+N G
Sbjct: 407 L--EKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIG 449



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/483 (24%), Positives = 218/483 (45%), Gaps = 46/483 (9%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P      ++L A   +  LQ   Q+H++L+ AG          LL L    G I  A  
Sbjct: 242 RPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHD 301

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF      +  L+N +++   + +    S   + +M  + I P+ +T+  ++++C     
Sbjct: 302 IFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQ 361

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           + LG  +H     +G++SD++V   L++ Y+K   +D ARK+ + +  + VV+W SMI+G
Sbjct: 362 IELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAG 421

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q+ F +EA+  F  M+D GV PD+       +ACA +  +  G  +H  +   G   +
Sbjct: 422 YVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +  +L+N+YARCG   +A  +F  +   + I W  +ISG+G      +A+ +F +M  
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQ 541

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G + N  TF++ +SA A+   +++G +V     +  G     E    ++ L+G+ G + 
Sbjct: 542 AGAKYNVFTFISAISALANLADIKQGKQVHGRAVKT-GHTSETEVANALISLYGKCGSIE 600

Query: 362 EAYKFVKDVI---------------------------------GEKPAPAVWTAMLGACK 388
           +A     ++                                  G KP    +  +L AC 
Sbjct: 601 DAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 660

Query: 389 MHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSNIYALAGRMDRVE-------VVRNIMIQ 439
                + G+   + + +V   N  P HY  + +I   AG++DR         +  N MI 
Sbjct: 661 HVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIW 720

Query: 440 KGL 442
           + L
Sbjct: 721 RTL 723



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 195/393 (49%), Gaps = 9/393 (2%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P      ++L A  + K   Q   +HA +    +     +   L++L    G    A+R+
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERV 201

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   D   FNTLI  +++      +L  +  M +S + P   T ++++ +CA +  L
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+ +H ++  +G   D   + +L++ Y K  +++ A  +F+     +VV WN M+  Y
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAY 321

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q     ++  +F  M+  G++P+  T  C+L  C   G I+LG  +H   +  G + ++
Sbjct: 322 GQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDM 381

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            ++  LI+MY++ G + KAR+I +M+ + +V++WT+MI+GY  H +  EA+  F  M+  
Sbjct: 382 YVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDC 441

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV P+N+   +  SACA    +++G ++ A +    G    +     +V+L+ R G   E
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEE 500

Query: 363 AYKFVKDVIGEKPAPAVWTAML---GACKMHKN 392
           A+   +++  E      W  ++   G  +++K 
Sbjct: 501 AFSLFREI--EHKDEITWNGLISGFGQSRLYKQ 531


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/551 (38%), Positives = 328/551 (59%), Gaps = 6/551 (1%)

Query: 30  HLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTD 89
           HL   G+     ++  L+++      +  A ++F  +P  +   + T+I   SK      
Sbjct: 86  HLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQK 145

Query: 90  SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
           +L     M+  N+ P+ YT+S+V++SC  +S +   R +HC +   G +SD+ V++AL++
Sbjct: 146 ALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALID 202

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            +AK    + A  VFD M     + WNS+I G+ QN  +  A+ LF  M+  G   +  T
Sbjct: 203 VFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQAT 262

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
              VL AC  L  ++LG   H  IV    D +++L  +L++MY +CG++  A  +F+ M 
Sbjct: 263 LTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMK 320

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
           E +VI W+ MISG   +GY  EA++LF RM++ G +PN +T V VL AC+HAGL+++G  
Sbjct: 321 ERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWY 380

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
            F SM++ YG+ P  EH+ CM+DL G+AG L++A K + ++  E P    W  +LGAC++
Sbjct: 381 YFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECE-PDAVTWRTLLGACRV 439

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
            +N  L    A+ +++++PE+ G Y +LSNIYA + + D VE +R  M  +G+KK  G S
Sbjct: 440 QRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCS 499

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
            +EV+++ + F +GD SHP   E+ + L++L+ R    GYVPE+   + +LE E+ E SL
Sbjct: 500 WIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSL 559

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
           R+HSEKLALAFGLM       IRI KNLR+C DCH   K  S    R I++R  +R+HHF
Sbjct: 560 RHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHF 619

Query: 570 KRGSCSCLDYW 580
           + G CSC DYW
Sbjct: 620 QDGKCSCGDYW 630



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 144/287 (50%), Gaps = 24/287 (8%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T+S +IK C     ++ G  +  H++ +G+   + +   L+N Y K N ++ A ++FD+M
Sbjct: 63  TYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQM 122

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
           P ++V++W +MIS Y +    ++A+ L  LM    V P+  T   VL +C  + D+   R
Sbjct: 123 PQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---R 179

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +H  I+ +GL+ +V + ++LI+++A+ G    A  +FD M   + I W ++I G+  + 
Sbjct: 180 MLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNS 239

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGV 344
               A+ELF RM+  G      T  +VL AC    L++ G   H       Q+  L    
Sbjct: 240 RSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLIL---- 295

Query: 345 EHHVCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAVWTAMLGA 386
             +  +VD++ + G L +A +       +DVI        W+ M+  
Sbjct: 296 --NNALVDMYCKCGSLEDALRVFNQMKERDVI-------TWSTMISG 333



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 149/283 (52%), Gaps = 6/283 (2%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           N +P+   Y ++L++   +  ++ +H  +I  G      + + L+ +    G    A  +
Sbjct: 157 NVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSV 216

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  + + D+ ++N++I   ++ + S  +L  ++RM  +       T ++V+++C  L++L
Sbjct: 217 FDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALL 276

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            LG   H H+    YD DL +  ALV+ Y K  +++ A +VF++M ++ V+ W++MISG 
Sbjct: 277 ELGMQAHVHIV--KYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGL 334

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ--GLDV 240
            QNG+++EA+ LF  M+  G  P+  T V VL AC+  G ++ G W +   + +  G+D 
Sbjct: 335 AQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG-WYYFRSMKKLYGIDP 393

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISG 282
                  +I++  + G +  A ++ + M  E + + W  ++  
Sbjct: 394 VREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 436



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 24/222 (10%)

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+   + ++  G+  DS T   ++  C     +  G  +   +   G    + L   LIN
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MY +   ++ A ++FD M + NVI+WT MIS Y       +A+EL   M    VRPN  T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 311 FVAVLSAC--------AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           + +VL +C         H G+++EG      +R              ++D+F + G   +
Sbjct: 165 YSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRS------------ALIDVFAKLGEPED 212

Query: 363 AYK-FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
           A   F + V G+     VW +++G    +   D+ +E+ + +
Sbjct: 213 ALSVFDEMVTGD---AIVWNSIIGGFAQNSRSDVALELFKRM 251


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/605 (36%), Positives = 345/605 (57%), Gaps = 29/605 (4%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQ 60
           +P    + + L A  RL+ L   ++VHA ++      + S + + L+ +      +++A+
Sbjct: 257 RPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHAR 316

Query: 61  RIFFCIPSPDSFL--FNTLIIRNSK-ANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSC 116
           R+F  +P     L  +N +I   ++      +++  + RM   +  +PS  T + V+ +C
Sbjct: 317 RVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPAC 376

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
           A   +     AVH +V      S+  VQ AL++ YA+   +D A  +F  +  + +V+WN
Sbjct: 377 ARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWN 436

Query: 177 SMISGYEQNGFAKEAIGLFNLMR---------------DFGVN-----PDSTTCVCVLAA 216
           ++I+G    G   EA  L   M+               D  V+     P++ T + +L  
Sbjct: 437 TLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPG 496

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           CA L     G+ +H + V   L+ ++ + ++L++MYA+CG ++ AR +FD +   NVI W
Sbjct: 497 CAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITW 556

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
             +I  YGMHG G EA+ LF RM A+G   PN VTF+A L+AC+H+GLV  G  +F  M+
Sbjct: 557 NVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMK 616

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
           ++YG  P    H C+VD+ GRAG L+EAY  +  +   +   + W+ MLGAC++H+N  L
Sbjct: 617 RDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKL 676

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
           G   AE L  +EP+   HYV+L NIY+ AG  +    VR +M Q+G+ K  G S +E+D 
Sbjct: 677 GRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDG 736

Query: 456 KNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEK 515
             + F  G+ +HP + +++ ++D L  R R  GYVP++   +H+++E E+   LRYHSEK
Sbjct: 737 AIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEK 796

Query: 516 LALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCS 575
           LA+AFGL+R  PG TIR+ KNLR+C DCH A KFIS    REI++RD  RFHHF+ G+CS
Sbjct: 797 LAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCS 856

Query: 576 CLDYW 580
           C DYW
Sbjct: 857 CGDYW 861



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 212/463 (45%), Gaps = 54/463 (11%)

Query: 25  QQVHAHLIVAGY---GRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS--PDSFLFNTLII 79
           ++ HA  +  G+   GR R     LLS+    G +  AQR+FF   +   D   +NT+I 
Sbjct: 174 REAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMIS 233

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
              +     +++     M+   + P   TF++ + +C+ L +L +GR VH  V     D 
Sbjct: 234 LLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVL---KDD 290

Query: 140 DL----HVQAALVNFYAKSNNVDVARKVFDRMPD--KSVVAWNSMISGYEQN-GFAKEAI 192
           DL     V +ALV+ YA +  V  AR+VFD +P+  + +  WN+MI GY Q+ G  +EAI
Sbjct: 291 DLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAI 350

Query: 193 GLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
            LF+ M  + G  P  TT   VL ACA+         VH ++V + +  N  +  +L++M
Sbjct: 351 ELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDM 410

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR----------- 300
           YAR G + +A  IF M+   ++++W  +I+G  + G  +EA +L   M+           
Sbjct: 411 YARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETM 470

Query: 301 -------AHGVR--PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV--- 348
                    G R  PNN+T + +L  CA       G  +       Y +   +E  +   
Sbjct: 471 LEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHG-----YAVRHALESDLAVG 525

Query: 349 -CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLS 405
             +VD++ + G L       + V    P   V  W  ++ A  MH   D  + + + +++
Sbjct: 526 SALVDMYAKCGCL----ALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVA 581

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGY 448
                P     ++ I ALA       V R + + +G+K+  G+
Sbjct: 582 NGEATPNE---VTFIAALAACSHSGLVDRGLELFQGMKRDYGF 621



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 152/315 (48%), Gaps = 37/315 (11%)

Query: 96  RMIVSNISPSNYTFSAVIKSCAHLSILN--LGRAVHCHVFVSGY---DSDLHVQAALVNF 150
           R ++++   S++T  +V+ +C+HL+     LGR  H      G+     +     AL++ 
Sbjct: 142 RDMLADHEVSSFTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSM 201

Query: 151 YAKSNNVDVARKVF--DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
           YA+   VD A+++F         +V WN+MIS   Q G  +EA+ +   M   GV PD  
Sbjct: 202 YARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGV 261

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIV-GQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
           T    L AC++L  + +GR VH F++    L  N  +A++L++MYA    VS AR +FDM
Sbjct: 262 TFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDM 321

Query: 268 MSE--LNVIAWTAMISGYGMH-GYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHAGL 323
           + E    +  W AMI GY  H G   EA+ELF RM A  G  P+  T   VL ACA +  
Sbjct: 322 VPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARS-- 379

Query: 324 VQEGHRVFASMRQEYGLLPGVEH------HVCMVDLFGRAGLLNEAYKF-----VKDVIG 372
                 VF      +G +   +          ++D++ R G ++EA+       ++D++ 
Sbjct: 380 -----EVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVS 434

Query: 373 EKPAPAVWTAMLGAC 387
                  W  ++  C
Sbjct: 435 -------WNTLITGC 442


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/556 (39%), Positives = 329/556 (59%), Gaps = 3/556 (0%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           +VHA+ I  G   +  +   L+ +      + Y    F  +P  D   + T+I   ++  
Sbjct: 373 EVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNE 432

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
              D+L   R++ +  +        +++ +C+ L    L + +H +V   G  +D+ +Q 
Sbjct: 433 CHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGL-ADILIQN 491

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           A+VN Y +   VD AR VF+ +  K +V+W SMI+    NG A EA+ LFN + +  + P
Sbjct: 492 AIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEP 551

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           D  T V VL A A L  +  G+ +H F++ +G  +  ++A SL++MYARCG +  AR IF
Sbjct: 552 DLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIF 611

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           + + + ++I WT+MI+  GMHG G +A++LF +M    V P+++TF+A+L AC+H+GLV 
Sbjct: 612 NYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVV 671

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           EG + F  M+ EY L P  EH+ C+VDL  R+  L EAY FV+++  E P+  VW A+LG
Sbjct: 672 EGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIE-PSAEVWCALLG 730

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           AC++H N DLG   A+ LL +  EN G+YV++SN +A  GR + VE VR+IM    LKK 
Sbjct: 731 ACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKK 790

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE-AGYVPESESAMHELEEEE 504
            G S +EV+ K + F   DKSHP  N IY  L +     +E  GY  +++   H++ EEE
Sbjct: 791 PGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEE 850

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +   L  HSE+LAL +GL+ TS G  +RI KNLR+C DCH+  K  S  + R ++VRD  
Sbjct: 851 KTQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDAS 910

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF+RG CSC D+W
Sbjct: 911 RFHHFERGLCSCGDFW 926



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 217/445 (48%), Gaps = 22/445 (4%)

Query: 10  AYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC- 65
            +  +LKA    K  +   ++H   +  GYG    +   L+++    G +  A+ +F   
Sbjct: 150 TFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSG 209

Query: 66  -IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            +   D   +N++I  +     S ++L  +RRM    +  + YTF + +++C   + + +
Sbjct: 210 LMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKI 269

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           GR +H  +  S + +D++V  AL+  YA    ++ A +VF  M  K  V+WN+++SG  Q
Sbjct: 270 GRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQ 329

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           N    +AI  F  M+D G  PD  + + ++AA  +  ++  G  VH + +  G+D N+ +
Sbjct: 330 NDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHI 389

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             SLI+MY +C  V      F+ M E ++I+WT +I+GY  +    +A+ L  +++   +
Sbjct: 390 GNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKM 449

Query: 305 RPNNVTFVAVLSACA---HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             + +   ++L AC+      L++E H          G L  +     +V+++G   L++
Sbjct: 450 DVDPMMIGSILLACSGLKSEKLIKEIHGYVLK-----GGLADILIQNAIVNVYGELALVD 504

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSN 419
            A + V + I  K   + WT+M+  C +H    L +E  E   S+   N  P    ++S 
Sbjct: 505 YA-RHVFESINSKDIVS-WTSMITCC-VHNG--LAIEALELFNSLIETNIEPDLITLVSV 559

Query: 420 IYALAG--RMDRVEVVRNIMIQKGL 442
           +YA A    + + + +   +I+KG 
Sbjct: 560 LYAAAALSSLKKGKEIHGFLIRKGF 584



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 185/396 (46%), Gaps = 27/396 (6%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLI-VAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           P   AY   L+     K L   QQ+HAH +    Y  S  + TK + +    G    A +
Sbjct: 44  PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVK 103

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +     F +N +I     A    +++  Y+ M V  +S   +TF  V+K+C     
Sbjct: 104 VFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKE 163

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR--MPDKSVVAWNSMI 179
             LG  +H      GY   + V  AL+  YAK  ++  AR +FD   M     V+WNS+I
Sbjct: 164 RRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSII 223

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           S +   G + EA+ LF  M++ GV  ++ T V  L AC     I +GR +H  I+     
Sbjct: 224 SAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHF 283

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            +V ++ +LI MYA CG +  A  +F  M   + ++W  ++SG   +   ++A+  F  M
Sbjct: 284 TDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDM 343

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFG 355
           +  G +P+ V+ + +++A   +  +  G  V A     Y +  G++ ++     ++D++G
Sbjct: 344 QDSGQKPDQVSVLNMIAASGRSANLLAGMEVHA-----YAIKHGIDSNMHIGNSLIDMYG 398

Query: 356 R---AGLLNEAYKFV--KDVIGEKPAPAVWTAMLGA 386
           +      +  A++++  KD+I        WT ++  
Sbjct: 399 KCCCVKYMGSAFEYMPEKDLIS-------WTTIIAG 427



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 162/349 (46%), Gaps = 12/349 (3%)

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF-VSGYDSDL 141
           K  F + +  F   +  +   P    +S  ++ CA    L  G+ +H H      Y   +
Sbjct: 23  KEAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSV 82

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            +    V+ Y K  +   A KVFD+M ++++  WN+MI      G   EAI L+  MR  
Sbjct: 83  FLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVL 142

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           GV+ D+ T  CVL AC    +  LG  +H   V  G    V +  +LI MYA+CG++  A
Sbjct: 143 GVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGA 202

Query: 262 REIFD--MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           R +FD  +M + + ++W ++IS +   G   EA+ LF RM+  GV  N  TFV+ L AC 
Sbjct: 203 RVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACE 262

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
               ++ G  + A + +       V     ++ ++   G + +A +  K ++ +      
Sbjct: 263 GPTFIKIGRGIHAVILKS-NHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVS-- 319

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEP--ENPGHYVMLSNIYALAGR 426
           W  +L    M +N D+  +   H   ++   + P    +L N+ A +GR
Sbjct: 320 WNTLLSG--MVQN-DMYSDAINHFQDMQDSGQKPDQVSVL-NMIAASGR 364


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/589 (35%), Positives = 338/589 (57%), Gaps = 35/589 (5%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           ++H+ +I AG+ +S  +   LL +    G I  A ++F  +P+ D   + +++  ++KA 
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL 83

Query: 86  FSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +L     M   + + P ++ F+ ++++C+ L  L LG+ VH    +S +  D  V+
Sbjct: 84  IPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVK 143

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI------------ 192
           ++L++ Y K    D AR VFD +  K+ V+W SMISGY ++G   EA+            
Sbjct: 144 SSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLF 203

Query: 193 -------------------GLFNLMRDFGVN-PDSTTCVCVLAACAQLGDIDLGRWVHEF 232
                               LFN MR  G++  D      V+  CA L  ++LG+ +H  
Sbjct: 204 SWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGL 263

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           ++  G +  + ++ +L++MYA+C ++  A++IF  M   +VI+WT++I G   HG   EA
Sbjct: 264 VIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEA 323

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           + L+  M    ++PN VTFV +L AC+HAGLV  G  +F SM  +Y + P ++H+ C++D
Sbjct: 324 LTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLD 383

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L  R+G L+EA   + D I  KP    W ++L AC  H N ++GV +A+ +L ++PE+P 
Sbjct: 384 LLSRSGHLDEAENLL-DKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPS 442

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK-SHPNTN 471
            Y++LSN+YA A     V  VR +M    ++K  GYS+++  + + +F  G+   HP  N
Sbjct: 443 TYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKN 502

Query: 472 EIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTI 531
           EI   L +L    R+ GYVP +   ++++E++E+E  L +HSE+LA+A+GL++  PG  I
Sbjct: 503 EICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTII 562

Query: 532 RIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           RIVKNLR+C DCH+ +KFIS    REI+VRD  R+HHFK G CSC D+W
Sbjct: 563 RIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 17/232 (7%)

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           ++ CA     +    +H  +  +G+D    +   L++ Y K   +  A ++FD MP++  
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVNPDSTTCVCVLAACAQLGDIDLGRWVH- 230
           V+W S+++ + +    +  + + N M    G+ PD     C++ AC+ LG + LG+ VH 
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
            F++    D  VV  +SLI+MY +CG   +AR +FD +   N ++WT+MISGY   G   
Sbjct: 130 RFMLSXFCDDEVV-KSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKC 188

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV-----FASMRQE 337
           EA++LF +        N  ++ A++S     GL+Q GH +     F  MR+E
Sbjct: 189 EAMDLFLQAPVR----NLFSWTALIS-----GLIQSGHGIYSFSLFNEMRRE 231



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 86/177 (48%), Gaps = 10/177 (5%)

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           L  CA+         +H  I+  G D + +L+ +L+++Y +CG + +A ++FD M   + 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           ++W ++++ +         + + + M  H G++P++  F  ++ AC+  G ++ G +V A
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 333 SMRQEYGLLPGVEHHVC---MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
                + L    +  V    ++D++ + G  +EA      ++ +      WT+M+  
Sbjct: 130 ----RFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVS--WTSMISG 180



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H  +I  G+     +   L+ +      I  A+ IF+ +P  D   + ++I+  ++ 
Sbjct: 258 KQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQH 317

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             + ++L  Y  M++S I P+  TF  ++ +C+H  +++ GR +      + Y  +  +Q
Sbjct: 318 GKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELF-RSMTTDYSINPSLQ 376

Query: 145 --AALVNFYAKSNNVDVARKVFDRMPDK-SVVAWNSMISG 181
               L++  ++S ++D A  + D++P K     W S++S 
Sbjct: 377 HYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSA 416


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 310/527 (58%), Gaps = 1/527 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+ +F  +P+ +   +N ++   +      DSL F+  M    + P  +   +V 
Sbjct: 122 GDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVF 181

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           + CA L  +  GR VH +V  SG DSD+ V  +L + Y +   +     V   +P  ++V
Sbjct: 182 RCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIV 241

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           ++N+ I+G  QNG ++ A+  F++MR   V PD  T V  ++ C+ L  +  G+ VH  +
Sbjct: 242 SFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQV 301

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  G+D  V + TSL++MY+RCG +  +  ++D    L++   +AMIS  G HG G +AV
Sbjct: 302 IKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAV 361

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           ELF +M   G  PN VTF+A+L AC+H+GL  EG   F  M + YG  P V+H+ C+VDL
Sbjct: 362 ELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDL 421

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GR+G L+EA   +   +  +    +W  +L ACK  KNFD+   +AE ++  +P +   
Sbjct: 422 LGRSGCLDEAEALILS-MPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDSAP 480

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+LSNI A + R   V  VR IM +K ++K  G S VE   + + F  GDKSHP   EI
Sbjct: 481 YVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQGEI 540

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
            +YL E+MG+ R+ GY P+     H++E+EE+E SL +HSEKLA+AF  +    G+ IR+
Sbjct: 541 DEYLKEMMGKIRQCGYAPDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPIRV 600

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +KNLR+C DCH AIK IS  T REI+VRD  RFHHF+ G CSC DYW
Sbjct: 601 MKNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 168/349 (48%), Gaps = 29/349 (8%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L+    K+ ++  AR++FD+MP ++V  WN+M++G    G  ++++  F  MR  G++PD
Sbjct: 114 LIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPD 173

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
                 V   CA L D+  GR VH ++V  G+D ++ +  SL +MY RCG +++   +  
Sbjct: 174 EFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLR 233

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            +  L ++++   I+G   +G    A+E F  MR   V P+ VTFV+ +S C+    + +
Sbjct: 234 ALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQ 293

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G +V A + +  G+   V     +V ++ R G L ++ +      G      + +AM+ A
Sbjct: 294 GQQVHAQVIKA-GVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLD--LFLLSAMISA 350

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C  H      VE+ + +++   E P     L+ +YA +                GLK   
Sbjct: 351 CGFHGQGHKAVELFKQMMNGGAE-PNEVTFLALLYACS--------------HSGLKDE- 394

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESES 495
           G    E+  K Y F       P+    Y  + +L+GR   +G + E+E+
Sbjct: 395 GLEFFELMTKTYGF------QPSVKH-YNCIVDLLGR---SGCLDEAEA 433



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 117/259 (45%), Gaps = 2/259 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVHA+++ +G      +   L  +    G +   + +   +PS     FNT I   ++ 
Sbjct: 194 RQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQN 253

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             S  +L ++  M    ++P   TF + I  C+ L+ L  G+ VH  V  +G D  + V 
Sbjct: 254 GDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVI 313

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            +LV+ Y++   +  + +V+D      +   ++MIS    +G   +A+ LF  M + G  
Sbjct: 314 TSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAE 373

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKARE 263
           P+  T + +L AC+  G  D G    E +    G   +V     ++++  R G + +A  
Sbjct: 374 PNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEA 433

Query: 264 -IFDMMSELNVIAWTAMIS 281
            I  M    + + W  ++S
Sbjct: 434 LILSMPVRADGVIWKTLLS 452



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 5/120 (4%)

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           I L R +H F    G   +     +L+  YA  G++  AR +F+ +S+ NV++W  +I G
Sbjct: 58  IPLLRQLHAFAATSGAAADRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGG 117

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
              +G    A ELF +M       N  T+ A+++   + GL ++  + F +MR+E G+ P
Sbjct: 118 CIKNGDLGSARELFDKMPTR----NVATWNAMVAGLTNVGLDEDSLQFFLAMRRE-GMHP 172


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/605 (35%), Positives = 344/605 (56%), Gaps = 35/605 (5%)

Query: 10  AYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           ++ ++LKA  ++       ++H      G+     + T L+++      I  A+ +F  +
Sbjct: 123 SFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKM 182

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
             PD+  +N +I    +     D+L  +  M  S++ P +     V+ +C H   L+ GR
Sbjct: 183 CHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGR 242

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV----------------------- 163
            +H  V  +GY  D H+Q AL+N YA    +D+ARK+                       
Sbjct: 243 TIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLG 302

Query: 164 --------FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
                   FD+M ++ +V W++MISGY ++   +EA+ LF+ M      PD  T + V++
Sbjct: 303 MVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVIS 362

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           AC+ +G +    W+H ++   G    + +  +LI+MYA+CGN+ KARE+F+ M   NVI+
Sbjct: 363 ACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVIS 422

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           W++MI+ + MHG    A++LF RM+   + PN VTF+ VL AC HAGLV+EG ++F+SM 
Sbjct: 423 WSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMI 482

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
            E+G+ P  EH+ CMVDL+ RA  L +A + + + +   P   +W +++ AC++H   +L
Sbjct: 483 NEHGISPTREHYGCMVDLYCRANFLRKAIELI-ETMPFAPNVIIWGSLMSACQVHGEAEL 541

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
           G   A+ LL +EP++ G  V+LSNIYA   R + V ++R  M  KG+ K    S +E++ 
Sbjct: 542 GEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINN 601

Query: 456 KNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEK 515
           + ++F M D+ H  ++EIY+ LDE++ + +  GY P +   + +LEEE+++  + +HSEK
Sbjct: 602 QVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEK 661

Query: 516 LALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCS 575
           LA+ +GL+       IRIVKNLR+C DCHS +K +S     EI+VRDR RFHH   G CS
Sbjct: 662 LAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICS 721

Query: 576 CLDYW 580
           C DYW
Sbjct: 722 CRDYW 726



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 201/416 (48%), Gaps = 44/416 (10%)

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM-IVSNISPSNYTFSAVIKSCAHLS 120
           +F  IP+P +   N L+   S+++F   ++  Y  +  ++  +   ++F +++K+ + +S
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
             N G  +H      G+  D  +Q  L+  YA    +  AR +FD+M     VAWN +I 
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIID 195

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY QNG   +A+ LF  MR   + PDS     VL+AC   G++  GR +HEF+   G  +
Sbjct: 196 GYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAI 255

Query: 241 NVVLATSLINMYARCGN-------------------------------VSKAREIFDMMS 269
           +  L T+LINMYA CG                                V  AR IFD M 
Sbjct: 256 DSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMI 315

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
           E +++ W+AMISGY       EA++LF  M      P+ +T ++V+SAC+H G + + + 
Sbjct: 316 ERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANW 375

Query: 330 VFASM-RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGA 386
           +   + R  +G    V +   ++D++ + G L +A    ++V    P   V  W++M+ A
Sbjct: 376 IHTYVDRSGFGRALSVNN--ALIDMYAKCGNLVKA----REVFENMPRKNVISWSSMINA 429

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL--AGRMDRVEVVRNIMIQK 440
             MH N D  +++   +  V  E P     +  +YA   AG ++  E + + MI +
Sbjct: 430 FAMHGNADSAIKLFRRMKEVNIE-PNGVTFIGVLYACGHAGLVEEGEKLFSSMINE 484


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/630 (35%), Positives = 343/630 (54%), Gaps = 71/630 (11%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L P QQ+HA    +G+     + + L  +      I  A+++F  +P  D  +++ +I  
Sbjct: 120 LDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAG 179

Query: 81  NSKAN-----------------------------------FSTDSLLFYRRMIVSNISPS 105
            S+                                     F  +++  +R M+V    P 
Sbjct: 180 YSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPD 239

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK------------ 153
             T S V+ +   L  + +G  VH +V   G  SD  V +A+++ Y K            
Sbjct: 240 GSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFD 299

Query: 154 -----------------SNN--VDVARKVFDRMPDK----SVVAWNSMISGYEQNGFAKE 190
                            S N  VD A +VF++  D+    +VV W S+I+   QNG   E
Sbjct: 300 EVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLE 359

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ LF  M+ +GV P++ T   ++ AC  +  +  G+ +H F + +G+  +V + ++LI+
Sbjct: 360 ALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALID 419

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MYA+CG +  AR  FD MS LN+++W A++ GY MHG   E +E+FH M   G +P+ VT
Sbjct: 420 MYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVT 479

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           F  VLSACA  GL +EG R + SM +E+G+ P +EH+ C+V L  R G L EAY  +K++
Sbjct: 480 FTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEM 539

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
             E P   VW A+L +C++H N  LG   AE L  +EP NPG+Y++LSNIYA  G  D  
Sbjct: 540 PFE-PDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEE 598

Query: 431 EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
             +R +M  KGL+K+ GYS +EV  K ++   GD+SHP   +I + LD+L  + +++GY+
Sbjct: 599 NRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYL 658

Query: 491 PESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFI 550
           P++   + ++EE+++E  L  HSEKLA+  GL+ TSPG  ++++KNLR+C DCH+ IK I
Sbjct: 659 PKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVI 718

Query: 551 SVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S    REI VRD  RFHHFK G CSC D+W
Sbjct: 719 SRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 191/419 (45%), Gaps = 76/419 (18%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC---IPSPDSFLFNTL 77
           L   +Q HA ++         + T LLS   +A  ++  Q        +P P  F F++L
Sbjct: 16  LSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSL 75

Query: 78  IIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
           I   ++++     L  +  +    + P  +   + IKSCA L  L+ G+ +H     SG+
Sbjct: 76  IHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGF 135

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ------------- 184
            +D  V ++L + Y K + +  ARK+FDRMPD+ VV W++MI+GY +             
Sbjct: 136 LTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGE 195

Query: 185 ----------------------NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
                                 NGF  EA+G+F +M   G  PD +T  CVL A   L D
Sbjct: 196 MRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLED 255

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS------------- 269
           + +G  VH +++ QGL  +  + +++++MY +CG V +   +FD +              
Sbjct: 256 VVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTG 315

Query: 270 ----------------------ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
                                 ELNV+ WT++I+    +G   EA+ELF  M+A+GV PN
Sbjct: 316 LSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPN 375

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
            VT  +++ AC +   +  G  +   S+R+  G+   V     ++D++ + G +  A +
Sbjct: 376 AVTIPSLIPACGNISALMHGKEIHCFSLRR--GIFDDVYVGSALIDMYAKCGRIQLARR 432



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 123/248 (49%), Gaps = 6/248 (2%)

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYD--SDLHVQAALVNFYAKSNNVDVAR---KVFDRM 167
           +  C   S  +L +A   H  +   +  SD  +  +L++FYA + ++   +    +   +
Sbjct: 5   LSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHL 64

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
           P  ++ +++S+I  + ++      +  F+ +    + PD+      + +CA L  +D G+
Sbjct: 65  PHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQ 124

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +H F    G   + ++A+SL +MY +C  +  AR++FD M + +V+ W+AMI+GY   G
Sbjct: 125 QLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLG 184

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
              EA ELF  MR+ GV PN V++  +L+   + G   E   +F  M  + G  P     
Sbjct: 185 LVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQ-GFWPDGSTV 243

Query: 348 VCMVDLFG 355
            C++   G
Sbjct: 244 SCVLPAVG 251


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/581 (38%), Positives = 326/581 (56%), Gaps = 6/581 (1%)

Query: 5   QPHSPAYEAILKAGPRLK-PL--QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP+   +    KA   L+ PL  +QVHA  + AG      +      +   AG    A++
Sbjct: 105 QPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARK 164

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  +   +N  +  +       D+L  +         P+  TF A + +CA  S 
Sbjct: 165 MFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASY 224

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L LGR +H  V  SG+++D+ V   L++FY K + V  +  +F  +   + V+W SMI  
Sbjct: 225 LRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVS 284

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y QN   ++A  +F   R  G+ P       VL+ACA L  +++G+ VH   V   +  N
Sbjct: 285 YVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGN 344

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR- 300
           + + ++L++MY +CG++  A   FD M E N++ W AMI GY   G    AV LF  M  
Sbjct: 345 IFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTC 404

Query: 301 -AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
            +H V PN VTFV VLSAC+ AG V  G  +F SMR  YG+ PG EH+ C+VDL GRAG+
Sbjct: 405 GSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGM 464

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           + +AY+F+K  +  +P  +VW A+LGA KM    +LG   A++L  ++P + G++V+LSN
Sbjct: 465 VEQAYQFIKK-MPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSN 523

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           ++A AGR +   +VR  M   G+KK  G S +      ++F   D SH   +EI   L +
Sbjct: 524 MFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAK 583

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           L G    AGY+P++  A+ +LEEEE+   + YHSEK+ALAFGL+    G+ IRI KNLR+
Sbjct: 584 LRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRI 643

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCHSAIKFIS    REIIVRD   FH F+   CSC DYW
Sbjct: 644 CGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 684



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 175/374 (46%), Gaps = 3/374 (0%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           AQ +    P+     +  LI  + +    T +L  +  M   +I P+++TF    K+   
Sbjct: 61  AQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGS 120

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L    +G+ VH     +G  SD+ V  +  + Y+K+   + ARK+FD MP++++  WN+ 
Sbjct: 121 LRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAY 180

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           +S     G   +A+  F   R  G  P+  T    L ACA    + LGR +H F++  G 
Sbjct: 181 LSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGF 240

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           + +V +A  LI+ Y +C  V  +  IF  +S+ N ++W +MI  Y  +    +A  +F R
Sbjct: 241 EADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLR 300

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
            R  G+ P +    +VLSACA   +++ G  V  ++  +  ++  +     +VD++G+ G
Sbjct: 301 ARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVH-TLAVKACVVGNIFVGSALVDMYGKCG 359

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
            + +A +   D + E+     W AM+G        D+ V + + +         +YV   
Sbjct: 360 SIEDAERAF-DEMPERNL-VTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFV 417

Query: 419 NIYALAGRMDRVEV 432
            + +   R   V V
Sbjct: 418 CVLSACSRAGSVNV 431



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 137/285 (48%), Gaps = 8/285 (2%)

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL--HVQAALVNFYAKSNNVDV 159
           +SP+  + +++++S        LGRA H  + +   D+ L   +   LVN Y+K +  + 
Sbjct: 4   LSPN--SLASLVESAVSTQCSRLGRAAHAQI-IKTLDNPLPSFIYNHLVNMYSKLDRPNS 60

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           A+ +    P++SVV W ++I+G  QNG    A+  F+ MR   + P+  T  C   A   
Sbjct: 61  AQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGS 120

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           L    +G+ VH   V  G   +V +  S  +MY++ G   +AR++FD M E N+  W A 
Sbjct: 121 LRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAY 180

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           +S   + G   +A+  F   R  G  PN +TF A L+ACA A  ++ G ++   + Q  G
Sbjct: 181 LSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQS-G 239

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
               V     ++D +G+   +  +      +   KP    W +M+
Sbjct: 240 FEADVSVANGLIDFYGKCHQVGCSEIIFSGI--SKPNDVSWCSMI 282


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/539 (35%), Positives = 332/539 (61%), Gaps = 1/539 (0%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN 101
           M   L++ +     I  A+ +F  +   DS  + T++   ++     ++L  +RRM    
Sbjct: 214 MYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEG 273

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           +    YTF +++ +C  L+ L  G+ +H ++  + Y+ ++ V +ALV+ Y+K  ++ +A 
Sbjct: 274 VGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAE 333

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
            VF RM  +++++W +MI GY QN  ++EA+  F+ M+  G+ PD  T   V+++CA L 
Sbjct: 334 AVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLA 393

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            ++ G   H   +  GL   + ++ +L+ +Y +CG++  A  +FD MS  + ++WTA+++
Sbjct: 394 SLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVT 453

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           GY   G   E ++LF +M A+G++P+ VTF+ VLSAC+ AGLV++G   F SM++++G++
Sbjct: 454 GYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIV 513

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P  +H+ CM+DL+ R+G   EA +F+K  +   P    W  +L +C++  N ++G   AE
Sbjct: 514 PIDDHYTCMIDLYSRSGRFKEAEEFIKQ-MPHSPDAFGWATLLSSCRLRGNMEIGKWAAE 572

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
           +LL  +P+NP  YV+L +++A  G+   V  +R  M  + +KK  G S ++   K ++FS
Sbjct: 573 NLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFS 632

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
             D+SHP ++ IY+ L+ L  +  E GY P+  S +H++ + ++ + + +HSEKLA+AFG
Sbjct: 633 ADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFG 692

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           L+     M IRIVKNLR+CVDCH+A KFIS  T R+I+VRD +RFH F  G+CSC D+W
Sbjct: 693 LIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 184/371 (49%), Gaps = 35/371 (9%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISP 104
           LLS +  +  +   +R+F  +P  D+  +N LI   S       S+  YR ++   ++ P
Sbjct: 85  LLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRP 144

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           +  T SA+I   + LS   LG +VHC V   G+ +   V + LV+ YAK   +  AR+VF
Sbjct: 145 TRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVF 204

Query: 165 DRMPDKSVV-------------------------------AWNSMISGYEQNGFAKEAIG 193
             M  K+VV                                W +M++G  QNG   EA+ 
Sbjct: 205 QEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALD 264

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           +F  MR  GV  D  T   +L AC  L  ++ G+ +H +I     + NV + ++L++MY+
Sbjct: 265 VFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYS 324

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +C ++  A  +F  M+  N+I+WTAMI GYG +    EAV  F  M+  G++P++ T  +
Sbjct: 325 KCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGS 384

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           V+S+CA+   ++EG + F  +    GL+  +     +V L+G+ G + +A++   ++   
Sbjct: 385 VISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH 443

Query: 374 KPAPAVWTAML 384
                 WTA++
Sbjct: 444 DQVS--WTALV 452



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 11/285 (3%)

Query: 11  YEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           + +IL A   L  L+   Q+HA++    Y  +  + + L+ +      I  A+ +F  + 
Sbjct: 281 FGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT 340

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
             +   +  +I+   +   S +++  +  M +  I P ++T  +VI SCA+L+ L  G  
Sbjct: 341 CRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ 400

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
            HC   VSG    + V  ALV  Y K  +++ A ++FD M     V+W ++++GY Q G 
Sbjct: 401 FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGK 460

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA-- 245
           AKE I LF  M   G+ PD  T + VL+AC++ G ++ G    ++      D  +V    
Sbjct: 461 AKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKG---CDYFDSMQKDHGIVPIDD 517

Query: 246 --TSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHG 287
             T +I++Y+R G   +A E    M    +   W  ++S   + G
Sbjct: 518 HYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRG 562



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 113/239 (47%), Gaps = 32/239 (13%)

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           VF    D +L  + AL++  A S  V    ++F  MP++  V++N++I+G+   G    +
Sbjct: 70  VFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARS 129

Query: 192 IGLFN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           + L+  L+R+  V P   T   ++   + L D  LG  VH  ++  G      + + L++
Sbjct: 130 VQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVD 189

Query: 251 MYA-------------------------------RCGNVSKAREIFDMMSELNVIAWTAM 279
           MYA                               RC  +  A+ +F +M + + I WT M
Sbjct: 190 MYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTM 249

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           ++G   +G   EA+++F RMRA GV  +  TF ++L+AC     ++EG ++ A + + +
Sbjct: 250 VTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTW 308


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/518 (41%), Positives = 306/518 (59%), Gaps = 40/518 (7%)

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGR--------AVHCHVFVSGYDSDLHVQAALVNFYAK 153
           ++P NY+F+ ++++   L+              +VH      G+  D HVQ+  V+ YA 
Sbjct: 190 LAPDNYSFTFLVRAATALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAA 249

Query: 154 SNNV-------------------------------DVARKVFDRMPDKSVVAWNSMISGY 182
           + +V                               D AR++FD MP +  VAWN+MI+GY
Sbjct: 250 AGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGY 309

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
              G ++EA+ LF+ MR  G      T V  L ACAQLG ++ G+WVH     +G+ ++V
Sbjct: 310 VHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSV 369

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            L T+LI+MY++CG V+ A E+FD M E NV  WT+ +SG  M+G G + + LF RM + 
Sbjct: 370 TLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMEST 429

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV PN VTFV VL  C+ AGLV EG   F SM+  +G+ P +EH+ CMVDL+GRAG L++
Sbjct: 430 GVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDD 489

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A  F+  +  E P   VW A+L A ++HKN +LG    + L+++E +N   +V+LSNIYA
Sbjct: 490 AVNFINGMPLE-PHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYA 548

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            +     V  VRN+M  KG+KK  G S +EV  K + F +G K+HP   EI   L E+  
Sbjct: 549 DSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQ 608

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           R R  GY+  ++  + ++EEE++E ++  HSEKLA+AFGL+     M IRIVKNLR+C D
Sbjct: 609 RLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCED 668

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH   K IS   NREI++RDR RFHHFK G+CSC DYW
Sbjct: 669 CHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/554 (37%), Positives = 330/554 (59%), Gaps = 23/554 (4%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           V  + I+ GY +S              G I  A+++F   P  D F +  ++    +   
Sbjct: 251 VSWNTIITGYAQS--------------GKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM 296

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             ++   + +M   N    N   +  ++         L   + C         ++     
Sbjct: 297 VEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCR--------NVSTWNT 348

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           ++  YA+   +  A+ +FD+MP +  V+W +MI+GY Q+G + EA+ LF  M   G   +
Sbjct: 349 MITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLN 408

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
            ++    L+ CA +  ++LG+ +H  +V  G +    +  +L+ MY +CG++ +A ++F 
Sbjct: 409 RSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFK 468

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M+  ++++W  MI+GY  HG+G  A+  F  M+  G++P++ T VAVLSAC+H GLV +
Sbjct: 469 EMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDK 528

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G + F +M Q+YG++P  +H+ CMVDL GRAGLL +A+  +K++  E P  A+W  +LGA
Sbjct: 529 GRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFE-PDAAIWGTLLGA 587

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
            ++H N +L    A+ + ++EPEN G YV+LSN+YA +GR   V  +R  M  KG+KK  
Sbjct: 588 SRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVP 647

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
           GYS +E+  K + FS+GD+ HP  +EI+ +L+EL  R ++AGYV ++   +H++EEEE+E
Sbjct: 648 GYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKE 707

Query: 507 YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
             +RYHSE+LA+A+G+MR S G  IR++KNLR+C DCH+AIK+++  T R II+RD  RF
Sbjct: 708 RMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRF 767

Query: 567 HHFKRGSCSCLDYW 580
           HHFK GSCSC DYW
Sbjct: 768 HHFKDGSCSCGDYW 781



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 185/420 (44%), Gaps = 56/420 (13%)

Query: 27  VHAHLIVAGYGRSRSM-----------------LTKLLSLVCDAGFITYAQRIFFCIPSP 69
           V  ++++ GY R+R++                    +LS     G +  A+ +F  +P  
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK 186

Query: 70  DSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           +   +N L+   ++NSK       +LF           S   ++ V  +C     +   +
Sbjct: 187 NDVSWNALLSAYVQNSK--MEEACMLF----------KSRENWALVSWNCLLGGFVKKKK 234

Query: 127 AVHCHVFVSGYD-SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
            V    F    +  D+     ++  YA+S  +D AR++FD  P + V  W +M+SGY QN
Sbjct: 235 IVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQN 294

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
              +EA  LF+ M +     +  +   +LA   Q   +++ + + + +  +    NV   
Sbjct: 295 RMVEEARELFDKMPE----RNEVSWNAMLAGYVQGERMEMAKELFDVMPCR----NVSTW 346

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
            ++I  YA+CG +S+A+ +FD M + + ++W AMI+GY   G+  EA+ LF +M   G R
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGR 406

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD-----LFGRAGLL 360
            N  +F + LS CA    ++ G ++         L+ G     C V      ++ + G +
Sbjct: 407 LNRSSFSSALSTCADVVALELGKQLHGR------LVKGGYETGCFVGNALLLMYCKCGSI 460

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SVEPENPGHYVMLS 418
            EA    K++ G+      W  M+     H   ++ +   E +    ++P++     +LS
Sbjct: 461 EEANDLFKEMAGKDIVS--WNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 133/280 (47%), Gaps = 50/280 (17%)

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
           + DL     ++  Y ++ N+  AR++F+ MP++ V +WN+M+SGY QNG   +A  +F+ 
Sbjct: 123 ERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDR 182

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDID--------------------LGRWVHEFIVGQG 237
           M +     +  +   +L+A  Q   ++                    LG +V +  + + 
Sbjct: 183 MPE----KNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEA 238

Query: 238 LDV-------NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
                     +VV   ++I  YA+ G + +AR++FD     +V  WTAM+SGY  +    
Sbjct: 239 RQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVE 298

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP--GVEHHV 348
           EA ELF +M       N V++ A+L     AG VQ G R+  + ++ + ++P   V    
Sbjct: 299 EARELFDKMPER----NEVSWNAML-----AGYVQ-GERMEMA-KELFDVMPCRNVSTWN 347

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPA--PAVWTAMLGA 386
            M+  + + G ++EA    K++  + P   P  W AM+  
Sbjct: 348 TMITGYAQCGKISEA----KNLFDKMPKRDPVSWAAMIAG 383



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 140/330 (42%), Gaps = 82/330 (24%)

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
           DSD+      ++ Y ++   + A +VF RMP  S V++N MISGY +NG  + A  LF+ 
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M      P+                 DL  W            NV     +I  Y R  N
Sbjct: 121 M------PER----------------DLVSW------------NV-----MIKGYVRNRN 141

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           + KARE+F++M E +V +W  M+SGY  +G   +A  +F RM       N+V++ A+LSA
Sbjct: 142 LGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM----PEKNDVSWNALLSA 197

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIG 372
                 ++E   +F S R+ + L+       C++  F +   + EA +F     V+DV+ 
Sbjct: 198 YVQNSKMEEACMLFKS-RENWALVS----WNCLLGGFVKKKKIVEARQFFDSMNVRDVVS 252

Query: 373 ----------------------EKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
                                 E P   V  WTAM+     ++     VE A  L    P
Sbjct: 253 WNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM----VEEARELFDKMP 308

Query: 409 E-NPGHYVMLSNIYALAGRMDRVEVVRNIM 437
           E N   +  +   Y    RM+  + + ++M
Sbjct: 309 ERNEVSWNAMLAGYVQGERMEMAKELFDVM 338



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 37/241 (15%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H  L+  GY     +   LL + C  G I  A  +F  +   D   +NT+I   S+ 
Sbjct: 429 KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 488

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            F   +L F+  M    + P + T  AV+ +C+H  +++ GR                  
Sbjct: 489 GFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQY---------------- 532

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
                FY  + +  V       MP+    A   M+    + G  ++A    NLM++    
Sbjct: 533 -----FYTMTQDYGV-------MPNSQHYA--CMVDLLGRAGLLEDA---HNLMKNMPFE 575

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA---RCGNVSKA 261
           PD+     +L A    G+ +L     + I     + N  +   L N+YA   R G+V K 
Sbjct: 576 PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPE-NSGMYVLLSNLYASSGRWGDVGKL 634

Query: 262 R 262
           R
Sbjct: 635 R 635


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/552 (36%), Positives = 338/552 (61%)

Query: 21   LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
            L  L+++H + +   +  +  +    ++     G ++YAQR+F  I S     +N LI  
Sbjct: 766  LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 825

Query: 81   NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            ++++N    SL  + +M +S + P ++T  +++ +C+ L  L LG+ VH  +  +  + D
Sbjct: 826  HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 885

Query: 141  LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
            L V  ++++ Y     +   + +FD M DKS+V+WN++I+GY QNGF   A+G+F  M  
Sbjct: 886  LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 945

Query: 201  FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            +G+     + + V  AC+ L  + LGR  H + +   L+ +  +A SLI+MYA+ G++++
Sbjct: 946  YGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQ 1005

Query: 261  AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
            + ++F+ + E +  +W AMI GYG+HG   EA++LF  M+  G  P+++TF+ VL+AC H
Sbjct: 1006 SSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNH 1065

Query: 321  AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
            +GL+ EG R    M+  +GL P ++H+ C++D+ GRAG L++A + V + + E+    +W
Sbjct: 1066 SGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIW 1125

Query: 381  TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
             ++L +C++H+N ++G +VA  L  +EPE P +YV+LSN+YA  G+ + V  VR  M + 
Sbjct: 1126 KSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEM 1185

Query: 441  GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
             L+K  G S +E+++K + F +G++      EI      L  +  + GY P++ S  H+L
Sbjct: 1186 SLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDL 1245

Query: 501  EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
             EEE+   LR HSEKLAL +GL++TS G TIR+ KNLR+CVDCH+A K IS    REI+V
Sbjct: 1246 SEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVV 1305

Query: 561  RDRLRFHHFKRG 572
            RD  RFHHFK G
Sbjct: 1306 RDNKRFHHFKNG 1317



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 181/337 (53%), Gaps = 12/337 (3%)

Query: 14  ILKAGPRLKPLQQVHA-HLIVAGYGRSRS---MLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           +L+A  + K ++     H +V+G  R R+   + T+++++    G    ++ +F  + S 
Sbjct: 445 LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSK 504

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
           + F +N +I   S+     + L  +  MI  +++ P ++T+  VIK+CA +S + +G AV
Sbjct: 505 NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAV 564

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H  V  +G   D+ V  ALV+FY     V  A ++FD MP++++V+WNSMI  +  NGF+
Sbjct: 565 HGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFS 624

Query: 189 KEAIGLFNLMR----DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           +E+  L   M     D    PD  T V VL  CA+  +I LG+ VH + V   LD  +VL
Sbjct: 625 EESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVL 684

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG- 303
             +L++MY++CG ++ A+ IF M +  NV++W  M+ G+   G      ++  +M A G 
Sbjct: 685 NNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGE 744

Query: 304 -VRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEY 338
            V+ + VT +  +  C H   +     +   S++QE+
Sbjct: 745 DVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF 781



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 174/348 (50%), Gaps = 7/348 (2%)

Query: 46   LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV--SNIS 103
            L+ +    G IT AQ IF    + +   +NT++   S    +  +    R+M+    ++ 
Sbjct: 688  LMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVK 747

Query: 104  PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
                T    +  C H S L   + +HC+     +  +  V  A V  YAK  ++  A++V
Sbjct: 748  ADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRV 807

Query: 164  FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
            F  +  K+V +WN++I G+ Q+   + ++     M+  G+ PDS T   +L+AC++L  +
Sbjct: 808  FHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSL 867

Query: 224  DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
             LG+ VH FI+   L+ ++ +  S++++Y  CG +   + +FD M + ++++W  +I+GY
Sbjct: 868  RLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGY 927

Query: 284  GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
              +G+   A+ +F +M  +G++   ++ + V  AC+    ++ G    A   +   LL  
Sbjct: 928  LQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKH--LLED 985

Query: 344  VEHHVC-MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
                 C ++D++ + G + ++ K    +  ++ + A W AM+    +H
Sbjct: 986  DAFIACSLIDMYAKNGSITQSSKVFNGL--KEKSTASWNAMIMGYGIH 1031


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/518 (41%), Positives = 306/518 (59%), Gaps = 40/518 (7%)

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGR--------AVHCHVFVSGYDSDLHVQAALVNFYAK 153
           ++P NY+F+ ++++   L+              +VH      G+  D HVQ+  V+ YA 
Sbjct: 183 LAPDNYSFTFLVRAATALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAA 242

Query: 154 SNNV-------------------------------DVARKVFDRMPDKSVVAWNSMISGY 182
           + +V                               D AR++FD MP +  VAWN+MI+GY
Sbjct: 243 AGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGY 302

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
              G ++EA+ LF+ MR  G      T V  L ACAQLG ++ G+WVH     +G+ ++V
Sbjct: 303 VHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSV 362

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            L T+LI+MY++CG V+ A E+FD M E NV  WT+ +SG  M+G G + + LF RM + 
Sbjct: 363 TLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMEST 422

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV PN VTFV VL  C+ AGLV EG   F SM+  +G+ P +EH+ CMVDL+GRAG L++
Sbjct: 423 GVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDD 482

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A  F+  +  E P   VW A+L A ++HKN +LG    + L+++E +N   +V+LSNIYA
Sbjct: 483 AVNFINGMPLE-PHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYA 541

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            +     V  VRN+M  KG+KK  G S +EV  K + F +G K+HP   EI   L E+  
Sbjct: 542 DSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQ 601

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           R R  GY+  ++  + ++EEE++E ++  HSEKLA+AFGL+     M IRIVKNLR+C D
Sbjct: 602 RLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCED 661

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH   K IS   NREI++RDR RFHHFK G+CSC DYW
Sbjct: 662 CHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 699


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 328/578 (56%), Gaps = 37/578 (6%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    +  +LKA   L  L+   QVH  ++  G   +  +   L+++    G +  A+++
Sbjct: 135 PDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKV 194

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
              +P  D   +N+++   +++                        F   ++ C  +  L
Sbjct: 195 LDQMPYRDVVSWNSMVAGYAQSG----------------------QFDDALEICKEMDSL 232

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           NL            +D+      + V  Y    NV     +F+RM  K++++WN MI+ Y
Sbjct: 233 NLN-----------HDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIY 281

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
             N    EA+ LF  M + G+ PD+ T   +L AC  L  + LGR +H++I    L  N+
Sbjct: 282 VNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNL 341

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           +L  +L++MYA+CG + +AR++FD M   +V++WT+M+S YG  G G +AV LF +M   
Sbjct: 342 LLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDS 401

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G  P+++ FV+VLSAC+H GL+ +G   F  M ++YG++P +EH  CMVDLFGRAG + E
Sbjct: 402 GQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEE 461

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           AY F+K +  E P   VW A+L AC++H   D+G+  A+ L  + P+  G+YV+LSNIYA
Sbjct: 462 AYSFIKQMPME-PNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYA 520

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            AG    V  VR  M + G+KK  G S VE++ + + F  GD+ HP    IY  LD L+G
Sbjct: 521 KAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVG 580

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           + +E GY+P++ESA+H++E E++E  L  HSEKLA+ F ++ T  G  IRI KNLR+C D
Sbjct: 581 KMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGD 640

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH AIK IS   +R IIVRD  RFHHF  G CSC DYW
Sbjct: 641 CHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 178/380 (46%), Gaps = 41/380 (10%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGR-SRSMLTKLLSLVCDAGFITYAQRIFFCIPS 68
           A E IL   P +K L ++H+ +++  + R   ++  KL+      G  + A+ IF     
Sbjct: 40  ACEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLE 99

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
            +   FN +I      N   ++L  ++ M+    +P +YTF  V+K+C+ L  L +G  V
Sbjct: 100 KNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQV 159

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H  +   G D++L +  ALV  Y K   +  ARKV D+MP + VV+WNSM++GY Q+G  
Sbjct: 160 HDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQF 219

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
            +A+ +   M    +N D+ T                                 + + S 
Sbjct: 220 DDALEICKEMDSLNLNHDAGT---------------------------------MASLSP 246

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           +  Y    NV     +F+ M++ N+I+W  MI+ Y  +    EAV LF +M   G++P+ 
Sbjct: 247 VVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDA 306

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           VT  ++L AC     +  G R+   + ++  L P +     ++D++ + G L EA    +
Sbjct: 307 VTIASLLPACGDLSALFLGRRLHKYI-EKGNLQPNLLLENALLDMYAKCGCLEEA----R 361

Query: 369 DVIGEKPAPAV--WTAMLGA 386
           DV  +     V  WT+M+ A
Sbjct: 362 DVFDKMRLRDVVSWTSMMSA 381



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 155/320 (48%), Gaps = 19/320 (5%)

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D  +   L+  Y+      VAR +FDR  +K+VV +N MI  Y  N    EA+ +F +M 
Sbjct: 70  DPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVML 129

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
               NPD  T  CVL AC+ L ++ +G  VH+ IV  GLD N+ +  +L+ MY +CG + 
Sbjct: 130 SCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLR 189

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           +AR++ D M   +V++W +M++GY   G   +A+E+   M +  +  +  T  ++     
Sbjct: 190 EARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVC 249

Query: 320 HAGL--VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV--IGEKP 375
           +  L  VQ  H +F  M ++  +   V     M+ ++    + NEA      +   G KP
Sbjct: 250 YTSLENVQYIHNMFERMTKKNLISWNV-----MIAIYVNNSMPNEAVSLFLQMEECGMKP 304

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN----IYALAGRMDRVE 431
                 ++L AC       LG  + ++   +E  N    ++L N    +YA  G +   E
Sbjct: 305 DAVTIASLLPACGDLSALFLGRRLHKY---IEKGNLQPNLLLENALLDMYAKCGCL---E 358

Query: 432 VVRNIMIQKGLKKHVGYSTV 451
             R++  +  L+  V ++++
Sbjct: 359 EARDVFDKMRLRDVVSWTSM 378


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/578 (38%), Positives = 347/578 (60%), Gaps = 13/578 (2%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPS 68
           +  +L+       ++Q+ A+LI+ G     S  TKLL L   + F  ++YA  IF  IP 
Sbjct: 4   FNLLLQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIPY 63

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI--SPSNYTFSAVIKSCAHLSILNLGR 126
           P +  +N +I   + ++   +++ +YR M  SN        T S  +K+CA     +   
Sbjct: 64  PSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAI 123

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H  +   G+++D+ +Q  L++ YAK  ++D+A+K+FD MP   + +WN++I+G+ Q  
Sbjct: 124 QLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGS 183

Query: 187 FAKEAIGLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
              +AI  F  M+ D  + P++ T    L AC+QLG +  G  VH++IV + LD NV + 
Sbjct: 184 RPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVC 243

Query: 246 TSLINMYARCGNVSKAREIFD-MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             +I+MYA+CG++ KA  +F+ M  + ++I W  MI  + MHG G +A++LF ++   G+
Sbjct: 244 NVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGM 303

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
            P+ V+++AVL AC HAGLV++G ++F SM Q  GL P ++H+  MVDL GRAG L EAY
Sbjct: 304 SPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSMVDLLGRAGRLKEAY 362

Query: 365 KFVKDVIGEKPAP--AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
               D++   P P   +W  +LGAC+ + + ++    +  L+ +   + G +V+LSN+YA
Sbjct: 363 ----DIVSSLPFPNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGXFVLLSNVYA 418

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
              R D V  VR+ M ++ +KK  G+S +E+  K Y F  GD+SH +  EIY  LDE+  
Sbjct: 419 ARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINL 478

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           R +  GY  ++ + +H++ +E++E +L YHSEKLA+AFGL  T  G  I+++KNLR+C D
Sbjct: 479 RIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGD 538

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH  IK IS    REIIVRDR RFH FK G CSC DYW
Sbjct: 539 CHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/581 (36%), Positives = 335/581 (57%), Gaps = 10/581 (1%)

Query: 6   PHSPAYEAILKAGP---RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   Y  IL+      +++  +Q+H+  I  G+     +   L+ +      +  A++I
Sbjct: 344 PNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKI 403

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
              +   D   + ++I    + +F  ++L  ++ M    + P N   ++   +CA +  +
Sbjct: 404 LEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAM 463

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G  +H  V+VSGY +D+ +   LVN YA+    + A  +F  +  K  + WN +ISG+
Sbjct: 464 RQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGF 523

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q+   ++A+ +F  M   G   +  T +  ++A A L DI  G+ VH   V  G     
Sbjct: 524 GQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSET 583

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +A +LI++Y +CG++  A+ IF  MS  N ++W  +I+    HG G EA++LF +M+  
Sbjct: 584 EVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQE 643

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G++PN+VTF+ VL+AC+H GLV+EG   F SM   YGL P  +H+ C+VD+ GRAG L+ 
Sbjct: 644 GLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDR 703

Query: 363 AYKFVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           A +FV     E P  A   +W  +L ACK+HKN ++G   A+HLL +EP +   YV+LSN
Sbjct: 704 ARRFVD----EMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSN 759

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
            YA+ G+    + VR +M  +G++K  G S +EV    + F +GD+ HP +++IY++L E
Sbjct: 760 AYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSE 819

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           L  R  + GY  E+ +  HE E+E+++ +   HSEKLA+AFGLM   P + +R++KNLR+
Sbjct: 820 LNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRV 879

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCHS +KF S  T REI++RD  RFHHF  GSCSC DYW
Sbjct: 880 CDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 202/405 (49%), Gaps = 5/405 (1%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           A +A    G R   + ++HA  +V G G  R +   L+ L    G +  A+++F  + S 
Sbjct: 48  ALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSR 107

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   +  ++   ++     ++   Y +M  + + P+ Y  S+V+ +C    +   GR +H
Sbjct: 108 DHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIH 167

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
             V+   + S+  V  AL+  Y    +  +A +VF  M     V +N++ISG+ Q G  +
Sbjct: 168 AQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGE 227

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
            A+ +F+ M+  G+ PD  T   +LAACA +GD+  G+ +H +++  G+  + +   SL+
Sbjct: 228 CALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLL 287

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           ++Y +CG++  A +IF++    NV+ W  M+  YG      ++ E+F +M+A G+ PN  
Sbjct: 288 DLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKF 347

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           T+  +L  C   G ++ G ++  S+  + G    +     ++D++ +   L++A K ++ 
Sbjct: 348 TYPCILRTCTCTGQIELGEQIH-SLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEM 406

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL--LSVEPENPG 412
           +  EK     WT+M+     H   +  +   + +    V P+N G
Sbjct: 407 L--EKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIG 449



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/483 (24%), Positives = 218/483 (45%), Gaps = 46/483 (9%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P      ++L A   +  LQ   Q+H++L+ AG          LL L    G I  A  
Sbjct: 242 RPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHD 301

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF      +  L+N +++   + +    S   + +M  + I P+ +T+  ++++C     
Sbjct: 302 IFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQ 361

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           + LG  +H     +G++SD++V   L++ Y+K   +D ARK+ + +  + VV+W SMI+G
Sbjct: 362 IELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAG 421

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q+ F +EA+  F  M+D GV PD+       +ACA +  +  G  +H  +   G   +
Sbjct: 422 YVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +  +L+N+YARCG   +A  +F  +   + I W  +ISG+G      +A+ +F +M  
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQ 541

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G + N  TF++ +SA A+   +++G +V     +  G     E    ++ L+G+ G + 
Sbjct: 542 AGAKYNVFTFISAISALANLADIKQGKQVHGRAVKT-GHTSETEVANALISLYGKCGSIE 600

Query: 362 EAYKFVKDVI---------------------------------GEKPAPAVWTAMLGACK 388
           +A     ++                                  G KP    +  +L AC 
Sbjct: 601 DAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 660

Query: 389 MHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSNIYALAGRMDRVE-------VVRNIMIQ 439
                + G+   + + +V   N  P HY  + +I   AG++DR         +  N MI 
Sbjct: 661 HVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIW 720

Query: 440 KGL 442
           + L
Sbjct: 721 RTL 723



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 185/368 (50%), Gaps = 4/368 (1%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P      ++L A  + K   Q   +HA +    +     +   L++L    G    A+R+
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERV 201

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   D   FNTLI  +++      +L  +  M +S + P   T ++++ +CA +  L
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+ +H ++  +G   D   + +L++ Y K  +++ A  +F+     +VV WN M+  Y
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAY 321

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q     ++  +F  M+  G++P+  T  C+L  C   G I+LG  +H   +  G + ++
Sbjct: 322 GQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDM 381

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            ++  LI+MY++   + KAR+I +M+ + +V++WT+MI+GY  H +  EA+  F  M+  
Sbjct: 382 YVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDC 441

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV P+N+   +  SACA    +++G ++ A +    G    +     +V+L+ R G   E
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEE 500

Query: 363 AYKFVKDV 370
           A+   +++
Sbjct: 501 AFSLFREI 508


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/555 (38%), Positives = 327/555 (58%), Gaps = 1/555 (0%)

Query: 26   QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
            Q+HA  + AG      + T L+ +    G +  A+ +F      D   +N ++     + 
Sbjct: 1058 QIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSG 1117

Query: 86   FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
                +L  Y  M  S       T     K+   L  L  G+ +H  V   G++ DL V +
Sbjct: 1118 DFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTS 1177

Query: 146  ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
             +++ Y K   ++ AR+VF  +P    VAW +MISG  +NG  + A+  ++ MR   V P
Sbjct: 1178 GVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQP 1237

Query: 206  DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
            D  T   ++ AC+ L  ++ GR +H  IV      +  + TSL++MYA+CGN+  AR +F
Sbjct: 1238 DEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLF 1297

Query: 266  DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
               +   + +W AMI G   HG   EA++ F  M++ GV P+ VTF+ VLSAC+H+GLV 
Sbjct: 1298 KRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVS 1357

Query: 326  EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            E +  F SM++ YG+ P +EH+ C+VD   RAG + EA K +  +  E  A +++  +L 
Sbjct: 1358 EAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASA-SMYRTLLN 1416

Query: 386  ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
            AC++  + + G  VAE LL++EP +   YV+LSN+YA A + + V   RN+M +  +KK 
Sbjct: 1417 ACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKD 1476

Query: 446  VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
             G+S V++  K +LF  GD+SH  T+ IY  ++ +M R RE GYVP+++ A+ ++EEE++
Sbjct: 1477 PGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDK 1536

Query: 506  EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
            E SL YHSEKLA+A+GLM+T P  T+R++KNLR+C DCHSAIK+IS    REI++RD  R
Sbjct: 1537 ECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANR 1596

Query: 566  FHHFKRGSCSCLDYW 580
            FHHF+ G CSC DYW
Sbjct: 1597 FHHFRNGICSCGDYW 1611



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 185/370 (50%), Gaps = 6/370 (1%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            +Q+H  ++ +G  +  S+   L+++   AG ++ A+ +F  +   D   +NT+I   + +
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLS 1014

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI-LNLGRAVHCHVFVSGYDSDLHV 143
                 S+  +  ++  ++ P  +T ++V+++C+ L     L   +H     +G   D  V
Sbjct: 1015 GLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFV 1074

Query: 144  QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
              AL++ Y+K   ++ A  +F       + +WN+++ GY  +G   +A+ L+ LM++ G 
Sbjct: 1075 STALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGE 1134

Query: 204  NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
              D  T V    A   L  +  G+ +H  +V +G ++++ + + +++MY +CG +  AR 
Sbjct: 1135 RSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARR 1194

Query: 264  IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
            +F  +   + +AWT MISG   +G    A+  +H+MR   V+P+  TF  ++ AC+    
Sbjct: 1195 VFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTA 1254

Query: 324  VQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
            +++G ++ A++ +      P V     +VD++ + G + +A    K     + A   W A
Sbjct: 1255 LEQGRQIHANIVKLNCAFDPFV--MTSLVDMYAKCGNIEDARGLFKRTNTRRIAS--WNA 1310

Query: 383  MLGACKMHKN 392
            M+     H N
Sbjct: 1311 MIVGLAQHGN 1320



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 130/249 (52%), Gaps = 1/249 (0%)

Query: 21   LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
            LK  +Q+HA ++  G+     + + +L +    G +  A+R+F  IPSPD   + T+I  
Sbjct: 1154 LKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISG 1213

Query: 81   NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
              +      +L  Y +M +S + P  YTF+ ++K+C+ L+ L  GR +H ++       D
Sbjct: 1214 CVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFD 1273

Query: 141  LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
              V  +LV+ YAK  N++ AR +F R   + + +WN+MI G  Q+G AKEA+  F  M+ 
Sbjct: 1274 PFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKS 1333

Query: 201  FGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             GV PD  T + VL+AC+  G +       +      G++  +   + L++  +R G + 
Sbjct: 1334 RGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIE 1393

Query: 260  KAREIFDMM 268
            +A ++   M
Sbjct: 1394 EAEKVISSM 1402



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 122/248 (49%), Gaps = 8/248 (3%)

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           PSP + +   + +R  +A  ST + L  R  ++ ++ P  ++   +++     S L+LG+
Sbjct: 622 PSPTAMIMALMHLR-LRAATSTANPLTPRAHLIHSL-PQCFS---ILRQAIAASDLSLGK 676

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--KSVVAWNSMISGYEQ 184
             H  +  SG+  D  V   L+  YAK  ++  ARK+FD  PD  + +V WN+++S    
Sbjct: 677 RAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAA 736

Query: 185 NG-FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           +   + +   LF L+R   V+    T   V   C           +H + V  GL  +V 
Sbjct: 737 HADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVF 796

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           +A +L+N+YA+ G + +AR +FD M+  +V+ W  M+  Y       EA+ LF      G
Sbjct: 797 VAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTG 856

Query: 304 VRPNNVTF 311
            RP++VT 
Sbjct: 857 FRPDDVTL 864



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 152/355 (42%), Gaps = 39/355 (10%)

Query: 14   ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
            +L A P     + +H + +  G      +   L+++    G I  A+ +F  +   D  L
Sbjct: 771  LLSASPSAS--ESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVL 828

Query: 74   FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
            +N ++          +++L +     +   P + T            +  L R V C   
Sbjct: 829  WNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVT------------LRTLSRVVKCKKN 876

Query: 134  VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS-VVAWNSMISGYEQNGFAKEAI 192
            +            L  F A       A K+F    D S V+ WN  +S + Q G A EA+
Sbjct: 877  I----------LELKQFKA------YATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAV 920

Query: 193  GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252
              F  M +  V  D  T V +L   A L  ++LG+ +H  ++  GLD  V +   LINMY
Sbjct: 921  DCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMY 980

Query: 253  ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
             + G+VS+AR +F  M+E+++I+W  MISG  + G    +V +F  +    + P+  T  
Sbjct: 981  VKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVA 1040

Query: 313  AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH----VCMVDLFGRAGLLNEA 363
            +VL AC+      EG    A+      +  GV         ++D++ + G + EA
Sbjct: 1041 SVLRACSSL----EGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEA 1091



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 167/387 (43%), Gaps = 41/387 (10%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP--DSFLFNTLI-IRN 81
            ++ HA ++ +G+   R +   L+++    G ++ A+++F   P    D   +N ++    
Sbjct: 676  KRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALA 735

Query: 82   SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
            + A+ S D    +R +  S +S + +T + V K C   +  +   ++H +    G   D+
Sbjct: 736  AHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDV 795

Query: 142  HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
             V  ALVN YAK   +  AR +FD M  + VV WN M+  Y       EA+ LF+     
Sbjct: 796  FVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRT 855

Query: 202  GVNPDSTT--CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
            G  PD  T   +  +  C +   ++L ++                AT L  MY   G+  
Sbjct: 856  GFRPDDVTLRTLSRVVKCKK-NILELKQF-------------KAYATKLF-MYDDDGS-- 898

Query: 260  KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
                        +VI W   +S +   G   EAV+ F  M    V  + +TFV +L+  A
Sbjct: 899  ------------DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVA 946

Query: 320  HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
                ++ G ++   + +  GL   V    C+++++ +AG ++ A    + V G+     +
Sbjct: 947  GLNCLELGKQIHGIVMRS-GLDQVVSVGNCLINMYVKAGSVSRA----RSVFGQMNEVDL 1001

Query: 380  --WTAMLGACKMHKNFDLGVEVAEHLL 404
              W  M+  C +    +  V +  HLL
Sbjct: 1002 ISWNTMISGCTLSGLEECSVGMFVHLL 1028


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/580 (36%), Positives = 338/580 (58%), Gaps = 5/580 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P +  Y AIL A      L   + +H H++ + +  + S+   L+++    G +  ++ 
Sbjct: 167 EPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKS 226

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   D   +N +I   +      D+   + RM     +P  YTFS+++ +CA    
Sbjct: 227 LFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKR 286

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  GR +H  +   G+D D  +Q  L++ + +  +++ AR+ F  +  K + AWN+M++ 
Sbjct: 287 LEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAA 346

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q    K+A+ L+  M   G  PD  T   V+ +CA LG +  G+++HE     G + +
Sbjct: 347 YAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKD 406

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V+L T+L+NMYA+CG+++ A++ FD +S  +V++W+AMI+    HG+  EA+EL H M  
Sbjct: 407 VILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNL 466

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+  N VT  +VL AC+H G + EG   F  + Q++G+    E+ V  +DL GRAG L 
Sbjct: 467 QGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLK 526

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA + V   +  K +      +LG CK+H +   G  + + ++++EPENPG YV+L+N+Y
Sbjct: 527 EA-EHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMY 585

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AGR D V  +R  M +KG+K+  G S++E   K Y FS+GD S+P   EI   L+ L 
Sbjct: 586 AAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLY 645

Query: 482 GRCR-EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
            R + E GYVP++    H++ ++++E  L++HSEK+A+ FGL+ + PG T+RI+KNLR+C
Sbjct: 646 SRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRVC 705

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH+  K  S  T R IIVRD  RFHHF+ G CSC DYW
Sbjct: 706 SDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 745



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/475 (26%), Positives = 233/475 (49%), Gaps = 46/475 (9%)

Query: 35  GYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII----RNSKANFSTDS 90
           G+ +   + T L+ L    G +  A+ +F  + +    +  T +I    R+ K + + D+
Sbjct: 98  GFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDT 157

Query: 91  LLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNF 150
              Y +M    + P  +T++A++ +C+    L  G+ +H H+  S +  ++ V+ AL+  
Sbjct: 158 ---YWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITM 214

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
           YAK  ++  ++ +F  M  K VV+WN+MI+ Y   G  K+A  LF+ M   G  PD  T 
Sbjct: 215 YAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTF 274

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
             +L ACA    ++ GR +H  I  +G D +  +  +LI+M+ RCG++  AR  F  + +
Sbjct: 275 SSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEK 334

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG--- 327
             + AW  M++ Y     G +A+ L+  M   G  P+  TF +V+ +CA  G ++EG   
Sbjct: 335 KELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFI 394

Query: 328 HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
           H    S   E  ++ G      +V+++ + G L +A K   D I  K   + W+AM+ A 
Sbjct: 395 HECSTSCGFEKDVILG----TALVNMYAKCGSLADAKKSF-DGISNKDVVS-WSAMIAAS 448

Query: 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVEVVRNIMIQKGLKKH 445
             H + +  +E++ HL++++          S ++A +  GR+   E +   M   GL + 
Sbjct: 449 AQHGHAEEALELS-HLMNLQGIAQNEVTASSVLHACSHGGRL--YEGIDYFM---GLSQD 502

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
            G   +E D++N +                ++D L+GR   AG++ E+E  +H +
Sbjct: 503 FG---IERDEENTV---------------GFID-LLGR---AGWLKEAEHVLHTM 535



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 169/339 (49%), Gaps = 7/339 (2%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+++F  I   ++F ++ L+    +     ++L  Y+ M+   IS   YT S+V+ +C  
Sbjct: 21  ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRKEISIDAYTLSSVLAACTK 80

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-KSVVAWNS 177
           L  +  GR V       G++ D+ V  +L++ +AK   ++ A  VF  M   + +++  +
Sbjct: 81  LLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTA 140

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           MI  Y ++G    A+  +  MR  G+ PD+ T   +L AC+    +  G+ +H+ I+   
Sbjct: 141 MIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESK 200

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
              N+ +  +LI MYA+CG++  ++ +F  M   +V++W AMI+ Y ++G+  +A  LFH
Sbjct: 201 HFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFH 260

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
           RM   G  P+  TF ++L ACA    +++G  +   +    G          ++ +F R 
Sbjct: 261 RMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITAR-GFDRDFAMQNNLISMFTRC 319

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
           G L  A ++   +  EK     W  ML A   +  FD G
Sbjct: 320 GSLESARRYFYSI--EKKELGAWNTMLAA---YAQFDKG 353



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 135/257 (52%), Gaps = 14/257 (5%)

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D  +   ++  Y K  + + AR+VFDR+  ++  +W+ ++  Y QN   +EA+ ++  M 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
              ++ D+ T   VLAAC +L D++ GR V       G + +VV+ATSLI+++A+CG + 
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 260 KAREIFDMMSEL-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
           +A  +F  M  + ++I+ TAMI  Y  HG    A++ + +MR+ G+ P+  T+ A+L AC
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGE 373
           +    + +G  +   +  E      +     ++ ++ + G L ++        VKDV+  
Sbjct: 181 SSPDFLLDGKHIHKHI-LESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVS- 238

Query: 374 KPAPAVWTAMLGACKMH 390
                 W AM+ A  ++
Sbjct: 239 ------WNAMIAAYTLY 249


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 328/578 (56%), Gaps = 37/578 (6%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    +  +LKA   L  L+   QVH  ++  G   +  +   L+++    G +  A+++
Sbjct: 135 PDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKV 194

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
              +P  D   +N+++   +++                        F   ++ C  +  L
Sbjct: 195 LDQMPYRDVVSWNSMVAGYAQSG----------------------QFDDALEICKEMDSL 232

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           NL            +D+      + V  Y    NV     +F+RM  K++++WN MI+ Y
Sbjct: 233 NLN-----------HDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIY 281

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
             N    EA+ LF  M + G+ PD+ T   +L AC  L  + LGR +H++I    L  N+
Sbjct: 282 VNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNL 341

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           +L  +L++MYA+CG + +AR++FD M   +V++WT+M+S YG  G G +AV LF +M   
Sbjct: 342 LLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDS 401

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G  P+++ FV+VLSAC+H GL+ +G   F  M ++YG++P +EH  CMVDLFGRAG + E
Sbjct: 402 GQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEE 461

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           AY F+K +  E P   VW A+L AC++H   D+G+  A+ L  + P+  G+YV+LSNIYA
Sbjct: 462 AYSFIKQMPME-PNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYA 520

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            AG    V  VR  M + G+KK  G S VE++ + + F  GD+ HP    IY  LD L+G
Sbjct: 521 KAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVG 580

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           + +E GY+P++ESA+H++E E++E  L  HSEKLA+ F ++ T  G  IRI KNLR+C D
Sbjct: 581 KMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGD 640

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH AIK IS   +R IIVRD  RFHHF  G CSC DYW
Sbjct: 641 CHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 178/380 (46%), Gaps = 41/380 (10%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGR-SRSMLTKLLSLVCDAGFITYAQRIFFCIPS 68
           A E IL   P +K L ++H+ +++  + R   ++  KL+      G  + A+ IF     
Sbjct: 40  ACEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLE 99

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
            +   FN +I      N   ++L  ++ M+    +P +YTF  V+K+C+ L  L +G  V
Sbjct: 100 KNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQV 159

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H  +   G D++L +  ALV  Y K   +  ARKV D+MP + VV+WNSM++GY Q+G  
Sbjct: 160 HDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQF 219

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
            +A+ +   M    +N D+ T                                 + + S 
Sbjct: 220 DDALEICKEMDSLNLNHDAGT---------------------------------MASLSP 246

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           +  Y    NV     +F+ M++ N+I+W  MI+ Y  +    EAV LF +M   G++P+ 
Sbjct: 247 VVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDA 306

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           VT  ++L AC     +  G R+   + ++  L P +     ++D++ + G L EA    +
Sbjct: 307 VTIASLLPACGDLSALFLGRRLHKYI-EKGNLRPNLLLENALLDMYAKCGCLEEA----R 361

Query: 369 DVIGEKPAPAV--WTAMLGA 386
           DV  +     V  WT+M+ A
Sbjct: 362 DVFDKMRLRDVVSWTSMMSA 381



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 155/320 (48%), Gaps = 19/320 (5%)

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D  +   L+  Y+      VAR +FDR  +K+VV +N MI  Y  N    EA+ +F +M 
Sbjct: 70  DPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVML 129

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
               NPD  T  CVL AC+ L ++ +G  VH+ IV  GLD N+ +  +L+ MY +CG + 
Sbjct: 130 SCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLR 189

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           +AR++ D M   +V++W +M++GY   G   +A+E+   M +  +  +  T  ++     
Sbjct: 190 EARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVC 249

Query: 320 HAGL--VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV--IGEKP 375
           +  L  VQ  H +F  M ++  +   V     M+ ++    + NEA      +   G KP
Sbjct: 250 YTSLENVQYIHNMFERMTKKNLISWNV-----MIAIYVNNSMPNEAVSLFLQMEECGMKP 304

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN----IYALAGRMDRVE 431
                 ++L AC       LG  + ++   +E  N    ++L N    +YA  G +   E
Sbjct: 305 DAVTIASLLPACGDLSALFLGRRLHKY---IEKGNLRPNLLLENALLDMYAKCGCL---E 358

Query: 432 VVRNIMIQKGLKKHVGYSTV 451
             R++  +  L+  V ++++
Sbjct: 359 EARDVFDKMRLRDVVSWTSM 378


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/589 (35%), Positives = 338/589 (57%), Gaps = 35/589 (5%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           ++H+ +I AG+ +S  +   LL +    G I  A ++F  +P+ D   + +++  ++KA 
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL 83

Query: 86  FSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +L     M   + + P ++ F+ ++++C+ L  L LG+ VH    +S +  D  V+
Sbjct: 84  IPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVK 143

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI------------ 192
           ++L++ Y K    D AR VFD +  K+ V+W SMISGY ++G   EA+            
Sbjct: 144 SSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLF 203

Query: 193 -------------------GLFNLMRDFGVN-PDSTTCVCVLAACAQLGDIDLGRWVHEF 232
                               LFN MR  G++  D      V+  CA L  ++LG+ +H  
Sbjct: 204 SWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGL 263

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           ++  G +  + ++ +L++MYA+C ++  A++IF  M   +VI+WT++I G   HG   EA
Sbjct: 264 VIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEA 323

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           + L+  M    ++PN VTFV +L AC+HAGLV  G  +F SM  +Y + P ++H+ C++D
Sbjct: 324 LTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLD 383

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L  R+G L+EA   + D I  KP    W ++L AC  H N ++GV +A+ +L ++PE+P 
Sbjct: 384 LLSRSGHLDEAENLL-DKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPS 442

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK-SHPNTN 471
            Y++LSN+YA A     V  VR +M    ++K  GYS+++  + + +F  G+   HP  N
Sbjct: 443 TYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKN 502

Query: 472 EIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTI 531
           EI   L +L    R+ GYVP +   ++++E++E+E  L +HSE+LA+A+GL++  PG  I
Sbjct: 503 EICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTII 562

Query: 532 RIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           RIVKNLR+C DCH+ +KFIS    REI+VRD  R+HHFK G CSC D+W
Sbjct: 563 RIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 17/232 (7%)

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           ++ CA     +    +H  +  +G+D    +   L++ Y K   +  A ++FD MP++  
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVNPDSTTCVCVLAACAQLGDIDLGRWVH- 230
           V+W S+++ + +    +  + + N M    G+ PD     C++ AC+ LG + LG+ VH 
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
            F++    D  VV  +SLI+MY +CG    AR +FD +   N ++WT+MISGY   G   
Sbjct: 130 RFMLSFFCDDEVV-KSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKC 188

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV-----FASMRQE 337
           EA++LF +        N  ++ A++S     GL+Q GH +     F  MR+E
Sbjct: 189 EAMDLFLQAPVR----NLFSWTALIS-----GLIQSGHGIYSFSLFNEMRRE 231



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 84/174 (48%), Gaps = 4/174 (2%)

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           L  CA+         +H  I+  G D + +L+ +L+++Y +CG + +A ++FD M   + 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           ++W ++++ +         + + + M  H G++P++  F  ++ AC+  G ++ G +V A
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 333 SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
                +     V     ++D++ + G  ++A      ++ +      WT+M+  
Sbjct: 130 RFMLSFFCDDEVVKS-SLIDMYTKCGQPDDARAVFDSILFKNSVS--WTSMISG 180



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H  +I  G+     +   L+ +      I  A+ IF+ +P  D   + ++I+  ++ 
Sbjct: 258 KQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQH 317

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             + ++L  Y  M++S I P+  TF  ++ +C+H  +++ GR +      + Y  +  +Q
Sbjct: 318 GKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELF-RSMTTDYSINPSLQ 376

Query: 145 --AALVNFYAKSNNVDVARKVFDRMPDK-SVVAWNSMISG 181
               L++  ++S ++D A  + D++P K     W S++S 
Sbjct: 377 HYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSA 416


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/523 (39%), Positives = 324/523 (61%), Gaps = 13/523 (2%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   ++ +I   ++     ++L  +R+M +  + P+  T ++++  CA +  L  G+  H
Sbjct: 334 DVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTH 393

Query: 130 CHVF-------VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM--PDKSVVAWNSMIS 180
            +V         +  + DL V   L++ YAK  +  VAR +FD +   DK+VV W  MI 
Sbjct: 394 AYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIG 453

Query: 181 GYEQNGFAKEAIGLFNLM--RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           GY Q+G A +A+ LF  +  +   + P++ T  C L ACA+LG++ LGR +H + +    
Sbjct: 454 GYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNEN 513

Query: 239 DVNVV-LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           +  V+ +   LI+MY++ G++  AR +FD M   NV++WT++++GYGMHG G EA+ LF 
Sbjct: 514 ESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFD 573

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
           +M+  G   + +TF+ VL AC+H+G+V +G   F  M + +G+ PG EH+ CMVDL GRA
Sbjct: 574 QMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRA 633

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           G LNEA + +K++  E P   VW A+L A ++H N +LG   A  L  +  EN G Y +L
Sbjct: 634 GRLNEAMELIKNMSME-PTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLL 692

Query: 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL 477
           SN+YA A R   V  +R++M   G++K  G S ++  +    F +GD+SHP + +IY  L
Sbjct: 693 SNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLL 752

Query: 478 DELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNL 537
            +L+ R ++ GYVP++  A+H++++EE+   L  HSEKLA+A+G++ T+PG  IRI KNL
Sbjct: 753 LDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNL 812

Query: 538 RMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R+C DCHSA+ +IS+  + EI++RD  RFHHFK+GSCSC  YW
Sbjct: 813 RICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 188/389 (48%), Gaps = 63/389 (16%)

Query: 56  ITYAQRIFFCIPSPDS-FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
           ++  QR+   IPS  + F +N LI R+ K     D+L FY +M      P +YTF  V+K
Sbjct: 79  VSLLQRL---IPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLK 135

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK---S 171
           +C  +  L  G +VH  V  +G  S++ +  ++V  Y +   +D A ++FD + ++    
Sbjct: 136 ACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIED 195

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRD---FGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           +V+WNS+++ Y Q G ++ A+ +   M +     + PD+ T V +L ACA +  +  G+ 
Sbjct: 196 IVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQ 255

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD---------------------- 266
           VH F V  GL  +V +  +L++MYA+C  +++A ++F+                      
Sbjct: 256 VHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGS 315

Query: 267 ---------MMSE----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
                    MM E    L+VI W+A+I+GY   G+G EA+++F +M+ +G+ PN VT  +
Sbjct: 316 FDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLAS 375

Query: 314 VLSACAHAGLVQEGHRVFASM------------RQEYGLLPGVEHHVCMVDLFGRAGLLN 361
           +LS CA  G +  G +  A +              +  +L G      ++D++ +     
Sbjct: 376 LLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNG------LIDMYAKCKSYR 429

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            A      + G+      WT M+G    H
Sbjct: 430 VARSIFDSIEGKDKNVVTWTVMIGGYAQH 458



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 10/189 (5%)

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
           F  +P +   + +L  C  L +  L    H+ I   G      + +  +  Y  CG  ++
Sbjct: 24  FTTSPPTIPLISLLRQCKTLINAKLA---HQQIFVHGF---TEMFSYAVGAYIECGASAE 77

Query: 261 AREIFDMM--SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
           A  +   +  S   V  W A+I      G   + +  + +M+  G  P++ TF  VL AC
Sbjct: 78  AVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKAC 137

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
                ++ G  V A +    GL   V     +V ++GR G L++A++   +V+  K    
Sbjct: 138 GEIPSLRHGASVHAIVCAN-GLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDI 196

Query: 379 V-WTAMLGA 386
           V W ++L A
Sbjct: 197 VSWNSILAA 205


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 331/578 (57%), Gaps = 36/578 (6%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           RS S    ++SL    G +  A  +F  +       +NT+I   ++      +L F+ RM
Sbjct: 411 RSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRM 470

Query: 98  I-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           +  S++ P  +T ++V+ +CA+L +L +G+ +H ++  +G      +  AL++ YAKS +
Sbjct: 471 LSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGS 530

Query: 157 VDVARKV---------------------------------FDRMPDKSVVAWNSMISGYE 183
           V+ AR++                                 FD M ++ V+AW +MI GY 
Sbjct: 531 VETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYH 590

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG   EA+ LF  M   G  P+S T   VL+ACA L  +D G+ +H   +    + +V 
Sbjct: 591 QNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVS 650

Query: 244 LATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           ++ ++I +YAR G+V  AR +FD +      I WT+MI     HG G +AV LF  M   
Sbjct: 651 VSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRV 710

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV+P+++T+V VLSACAHAG V +G R +  M+ E+G++P + H+ CMVDL  RAGLL E
Sbjct: 711 GVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTE 770

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A++F++  +   P   VW ++L AC++ KN DL    A  LLS++P N G Y  L+N+Y+
Sbjct: 771 AHEFIQR-MPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYS 829

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             GR +    +  +   KG+KK  G+S   V  K ++F   D  HP  + IY+   E+  
Sbjct: 830 ACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWE 889

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             ++AG+VP+  S +H++++E +E  L  HSEKLA+AFGL+ T    T+RI+KNLR+C D
Sbjct: 890 EIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCND 949

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+AIKFIS   +REIIVRD  RFHHF+ G CSC DYW
Sbjct: 950 CHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 212/455 (46%), Gaps = 78/455 (17%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LLSL   +G +  A  +F  +P  D+  +  +I+  +++    D++  +  M+    +PS
Sbjct: 287 LLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPS 346

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            +T + V+ SCA +    +GR VH  V   G  S + V  +++  Y K  + + AR VF+
Sbjct: 347 QFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFE 406

Query: 166 RMPDKSVVAWNSMIS-------------------------------GYEQNGFAKEAIGL 194
           RM  +SV +WN M+S                               GY QNG    A+  
Sbjct: 407 RMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKF 466

Query: 195 FN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL--------------- 238
           F+ ++    + PD+ T   VL+ACA L  + +G+ +H +I+  G+               
Sbjct: 467 FSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYA 526

Query: 239 ------------------DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
                             D+NV+  T+L+  Y + G+  +AREIFD+M+  +VIAWTAMI
Sbjct: 527 KSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMI 586

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV----FASMRQ 336
            GY  +G   EA+ELF  M   G  PN+ T  AVLSACA    +  G ++      S+++
Sbjct: 587 VGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQE 646

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
           +      V     ++ ++ R+G +  A + V D I  +     WT+M+ A   H   +  
Sbjct: 647 Q-----SVSVSNAIITVYARSGSVPLARR-VFDQICWRKETITWTSMIVAMAQHGLGEQA 700

Query: 397 VEVAEHLLSVEPENPGH--YVMLSNIYALAGRMDR 429
           V + E ++ V  + P H  YV + +  A AG +D+
Sbjct: 701 VVLFEEMVRVGVK-PDHITYVGVLSACAHAGFVDK 734



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 32/217 (14%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           +L++ YAKS  +  A  VF  MPD+  V+W  MI G  ++G   +A+  F  M   G  P
Sbjct: 286 SLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAP 345

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
              T   VL++CA +    +GR VH F+V  GL   V +A S++ MY +CG+   AR +F
Sbjct: 346 SQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVF 405

Query: 266 DMMS-------------------------------ELNVIAWTAMISGYGMHGYGTEAVE 294
           + M                                E ++++W  +I+GY  +G    A++
Sbjct: 406 ERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALK 465

Query: 295 LFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            F RM  A  + P+  T  +VLSACA+  +++ G ++
Sbjct: 466 FFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQM 502



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/286 (19%), Positives = 118/286 (41%), Gaps = 51/286 (17%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+S    A+L A   L  L   +Q+H   I +   +S S+   ++++   +G +  A+R
Sbjct: 611 EPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARR 670

Query: 62  IFFCI-PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           +F  I    ++  + ++I+  ++      +++ +  M+   + P + T+  V+ +CAH  
Sbjct: 671 VFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAG 730

Query: 121 ILNLGRAVHCHVFVS-GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
            ++ G+  +  +    G    +   A +V+ +A++  +  A +   RMP           
Sbjct: 731 FVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMP----------- 779

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
                                  V PD+     +LAAC    + DL     E   G+ L 
Sbjct: 780 -----------------------VAPDTVVWGSLLAACRVRKNADLA----ELAAGKLLS 812

Query: 240 V---NVVLATSLINMYARCGNVSKAREIFDMMSELNV-----IAWT 277
           +   N    ++L N+Y+ CG  + A  I+ +  +  V      +WT
Sbjct: 813 IDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWT 858



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%)

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           N     SL+++YA+ G +  A  +F  M + + ++WT MI G    G   +AV+ F  M 
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 301 AHGVRPNNVTFVAVLSACA 319
           + G  P+  T   VLS+CA
Sbjct: 340 SEGFAPSQFTLTNVLSSCA 358


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/561 (36%), Positives = 320/561 (57%), Gaps = 40/561 (7%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA- 117
           A+ +   +  P    +N +I    +     ++   +RRM    I    YT++++I +C  
Sbjct: 236 ARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGS 295

Query: 118 ---HLSILNLGRAVHCHVFVSGYDSDLH----VQAALVNFYAKSNNVDVARKVFDRMPDK 170
               + + N GR VH ++  +  +   H    V  AL+ FY K + +  AR+VFD+MP +
Sbjct: 296 CNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVR 355

Query: 171 SVVAWNSMISGY-------------------------------EQNGFAKEAIGLFNLMR 199
            +++WN+++SGY                                QNGF +E + LFN M+
Sbjct: 356 DIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMK 415

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+ P        + AC+ LG +D G+ +H  ++  G D  +    +LI MY+RCG V 
Sbjct: 416 SEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVE 475

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            A  +F  M  ++ ++W AMI+    HG+G +A+ELF +M    + P+ +TF+ +L+AC 
Sbjct: 476 SAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACN 535

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           HAGL++EG   F +M   YG+ PG +H+  ++DL  RAG+  +A   +K +  E  AP +
Sbjct: 536 HAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAP-I 594

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W A+L  C++H N +LG++ A+ LL + P   G Y++LSN+YA  G+ D V  VR +M +
Sbjct: 595 WEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRE 654

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           +G+KK  G S VEV+   ++F + D  HP    +Y YL +L+   ++ GYVP+++  +H+
Sbjct: 655 RGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHD 714

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           +E E +E+SL  HSEKLA+ +G+M+   G TIR+ KNLR+C DCH+A K+IS    REI+
Sbjct: 715 MESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIV 774

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           VRDR RFHHFK G CSC +YW
Sbjct: 775 VRDRKRFHHFKNGECSCGNYW 795



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 201/497 (40%), Gaps = 122/497 (24%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD-------------- 70
           + VHAH++ +G+  +  +L +L+++ C +  ITYA+++F  IP PD              
Sbjct: 25  RAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSS 84

Query: 71  -------------------SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA 111
                              +  +N +I   S  N    +L  + +M      P  +TFS+
Sbjct: 85  GNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSS 144

Query: 112 VIKSCAHLSILNLG-RAVHCHVFVSGYDSDLHVQAALVNFYA---------KSNNVDVAR 161
           V+ + + ++      + +HC V   G      V  AL++ Y           S  +  AR
Sbjct: 145 VLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASAR 204

Query: 162 KVFDRMPDKSV---------------------------------VAWNSMISGYEQNGFA 188
           KVFD  P   +                                 VAWN+MISGY + G  
Sbjct: 205 KVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLY 264

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACA----QLGDIDLGRWVHEFIVGQ-------- 236
           +EA   F  M   G+  D  T   +++AC     ++G  + GR VH +I+          
Sbjct: 265 EEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHF 324

Query: 237 GLDVNVVLAT---------------------------SLINMYARCGNVSKAREIFDMMS 269
            L VN  L T                           ++++ Y     + +A  IF  M 
Sbjct: 325 VLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMP 384

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
           E NV+ WT MISG   +G+G E ++LF++M++ G+ P +  F   ++AC+  G +  G +
Sbjct: 385 ERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQ 444

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP--APAVWTAMLGAC 387
           + + + +  G   G+     ++ ++ R G++  A    + V    P      W AM+ A 
Sbjct: 445 IHSQVIR-LGHDSGLSAGNALITMYSRCGVVESA----ESVFLTMPYVDSVSWNAMIAAL 499

Query: 388 KMHKNFDLGVEVAEHLL 404
             H +    +E+ E ++
Sbjct: 500 AQHGHGVKAIELFEQMM 516



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 153/339 (45%), Gaps = 14/339 (4%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           +LS   +A  I  A  IF  +P  +   +  +I   ++  F  + L  + +M    + P 
Sbjct: 363 VLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPC 422

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           +Y F+  I +C+ L  L+ G+ +H  V   G+DS L    AL+  Y++   V+ A  VF 
Sbjct: 423 DYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFL 482

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP    V+WN+MI+   Q+G   +AI LF  M    + PD  T + +L AC   G I  
Sbjct: 483 TMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKE 542

Query: 226 GR-WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGY 283
           GR +        G+         LI++  R G   KA+ +   M  E     W A+++G 
Sbjct: 543 GRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGC 602

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL-- 341
            +HG     ++   R+    +   + T++ + +  A  G   E  RV   MR E G+   
Sbjct: 603 RIHGNMELGIQAADRL-LELIPGQDGTYIILSNMYAALGQWDEVARVRLLMR-ERGVKKE 660

Query: 342 PG-----VEH--HVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           PG     VE+  HV +VD   R   +   Y +++ ++ E
Sbjct: 661 PGCSWVEVENMVHVFLVD-DARHPEVQAVYTYLQQLVNE 698



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 120/294 (40%), Gaps = 79/294 (26%)

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
           + RAVH H+  SG+  +  +   L+N Y KS+N+  ARK+FD++P   +VA  +++S Y 
Sbjct: 23  IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 184 QNGFAKEAIGLFNL---------------------------------MRDFGVNPDSTTC 210
            +G  K A  LFN                                  M+ +G  PD  T 
Sbjct: 83  SSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTF 142

Query: 211 VCVLAACAQLGD------------IDLGRWVHEFIVGQGLDVNVVLA------------- 245
             VL+A + + D            I LG  +   +    L   V  A             
Sbjct: 143 SSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMAS 202

Query: 246 ------------------TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
                             T++I  Y R  ++  ARE+ D ++    +AW AMISGY   G
Sbjct: 203 ARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRG 262

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
              EA + F RM + G++ +  T+ +++SAC   G   E   +F   RQ +G +
Sbjct: 263 LYEEAFDTFRRMHSMGIQEDEYTYTSLISAC---GSCNEKMGMFNCGRQVHGYI 313



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
           + R VH  I+  G   N  +   LIN+Y +  N++ AR++FD + + +++A T ++S Y 
Sbjct: 23  IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
             G    A +LF+      +R + V++ A+++A +H         +F  M++ YG LP
Sbjct: 83  SSGNVKLAQQLFNATPL-TIR-DTVSYNAMITAYSHGNDGHAALNLFVQMKR-YGFLP 137


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/576 (36%), Positives = 341/576 (59%), Gaps = 12/576 (2%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y  ++K    +K L   +Q+H+ ++  G+    +++T L+     AG +  A  IF  + 
Sbjct: 309 YATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMS 368

Query: 68  SPDSFLFNTLIIRNSKANFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
              + +  T +I     N     +   + RM    ++P+++T+S ++ +    S+ +L  
Sbjct: 369 GSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA----SVASLPP 424

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H  V  + Y+    V  AL+  Y+K  N + A  +F  +  K VV+W++M++ Y Q G
Sbjct: 425 QIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAG 484

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ-LGDIDLGRWVHEFIVGQGLDVNVVLA 245
            +  A  +F  M   G+ P+  T   V+ ACA     +DLGR  H   +       + ++
Sbjct: 485 DSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVS 544

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           ++L++MYAR G++  A+ IF+  ++ ++++W +M+SGY  HGY  +A+++F +M A G+ 
Sbjct: 545 SALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIE 604

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
            + VTF++V+  CAHAGLV+EG R F SM ++YG+ P +EH+ CMVDL+ RAG L+EA  
Sbjct: 605 MDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMS 664

Query: 366 FVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
            ++ +    PA P VW  +LGACK+HKN +LG   AE LLS+EP +   YV+LSNIY+ A
Sbjct: 665 LIEGM--SFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAA 722

Query: 425 GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRC 484
           G+    + VR +M  K +KK  G S +++  K + F   DKSHP + +IY  L  +  + 
Sbjct: 723 GKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKL 782

Query: 485 REAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
           ++ GY P++  A+HE+ EE++E  L  HSE+LALAFGL+ T PG  + I KNLR+C DCH
Sbjct: 783 KQEGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCH 842

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           + IK +S   +REI++RD  RFHHF  G CSC D+W
Sbjct: 843 TVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 147/282 (52%), Gaps = 11/282 (3%)

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLHVQAALVNFYAKSNNVDVARKVFDRMPD 169
            V+K C  +    LG+ +H      G+D  D+ V  +LV+ Y K ++V   RKVF+ MP 
Sbjct: 108 GVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPK 167

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           ++VV W S+++GY Q+G   + + LF  MR  GV P+S T   VL+  A  G +DLGR V
Sbjct: 168 RNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRV 227

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           H   V  G    V +  SL+NMYA+CG V +AR +F  M   ++++W  +++G  ++G+ 
Sbjct: 228 HAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHD 287

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACA---HAGLVQEGH-RVFASMRQEYGLLPGVE 345
            EA++LFH  R+        T+  V+  CA     GL ++ H  V       YG +    
Sbjct: 288 LEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNV---- 343

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
               ++D + +AG L  A      + G +   + WTAM+  C
Sbjct: 344 -MTALMDAYSKAGQLGNALDIFLLMSGSQNVVS-WTAMINGC 383



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 132/516 (25%), Positives = 235/516 (45%), Gaps = 57/516 (11%)

Query: 25  QQVHAHLIVAGYGRSR-SMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           +Q+H   I  G+ R    + T L+ +      +   +++F  +P  +   + +L+    +
Sbjct: 123 KQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQ 182

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
               +D +  + RM    + P++ TF++V+   A   +++LGR VH      G  S + V
Sbjct: 183 DGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFV 242

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             +L+N YAK   V+ AR VF  M  + +V+WN++++G   NG   EA+ LF+  R    
Sbjct: 243 CNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSIT 302

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
               +T   V+  CA +  + L R +H  ++ +G      + T+L++ Y++ G +  A +
Sbjct: 303 MLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALD 362

Query: 264 IFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA--- 319
           IF +MS   NV++WTAMI+G   +G    A  LF RMR  GV PN+ T+  +L+A     
Sbjct: 363 IFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASL 422

Query: 320 ----HAGLVQEGHR----VFASMRQEYGLLPGVEHHV---------------CMVDLFGR 356
               HA +++  +     V  ++   Y  L   E  +                M+  + +
Sbjct: 423 PPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQ 482

Query: 357 AGLLNEAYK-FVKDVI-GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
           AG  + A   F+K  + G KP     ++++ AC    +   GV++     ++  ++  H 
Sbjct: 483 AGDSDGATNIFIKMTMHGLKPNEFTISSVIDAC---ASPTAGVDLGRQFHAISIKHRCHD 539

Query: 415 VM-----LSNIYALAG-----------RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458
            +     L ++YA  G           + DR  V  N M+  G  +H GYS   +D    
Sbjct: 540 ALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSML-SGYAQH-GYSQKALDVFRQ 597

Query: 459 LFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
           + + G +    T     +L  +MG C  AG V E +
Sbjct: 598 MEAEGIEMDGVT-----FLSVIMG-CAHAGLVEEGQ 627


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/550 (37%), Positives = 332/550 (60%), Gaps = 2/550 (0%)

Query: 31  LIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDS 90
           +I  G+   + M  ++L +    G +  A+R+F  +P  +   +NT+I          ++
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60

Query: 91  LLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNF 150
              +  M        ++TF+ +I++ A L ++++GR +H      G   D+ V  AL++ 
Sbjct: 61  FRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDM 120

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
           Y+K  +++ AR VF+ MP+K+ V WN++I+GY  +G+++EA+ ++  MRD GV  D  T 
Sbjct: 121 YSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTF 180

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
             ++  CA+L  ++  +  H  ++  G   ++V  T+L++ Y++ G +  AR +FD M+ 
Sbjct: 181 SMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMAS 240

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            NVI+W A+I GYG HG G+EAVELF +M    + PN++TF+AVLSAC+H+GL + G  +
Sbjct: 241 KNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEI 300

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           F SM ++  + P   H+ CM++L GR GLL+EA   ++     KP   +W A+L AC+++
Sbjct: 301 FQSMGRDNRIKPRAMHYACMIELMGREGLLDEALALIRGA-PFKPTANMWAALLTACRVN 359

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
           +NF+LG   AE L  +EP+   +Y++L NIY  AG +     V + + +KGL+     S 
Sbjct: 360 ENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSW 419

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLR 510
           +EV ++ ++F  GD  HP   EIYQ +D+LM    + GYVP  ++ + +++E+E    L 
Sbjct: 420 IEVKRRPHVFLSGDNRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDVDEQEERVRL- 478

Query: 511 YHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
           YHSEKLA+AFGL+ T     ++IV+  R+C DCH AIK I+  T REI++RD  RFHHFK
Sbjct: 479 YHSEKLAIAFGLISTPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGRFHHFK 538

Query: 571 RGSCSCLDYW 580
            G CSC DYW
Sbjct: 539 HGHCSCEDYW 548



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 162/351 (46%), Gaps = 51/351 (14%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+HA  +  G G    +   L+ +    G I  A+ +F  +P   +  +NT+I   +  
Sbjct: 96  RQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALH 155

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            +S ++L  Y  M  S +   ++TFS +++ CA L+ +   +  H  +   G+ SD+   
Sbjct: 156 GYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVAN 215

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            ALV+FY+K   ++ AR VFD+M  K+V++WN++I GY  +G   EA+ LF  M    +N
Sbjct: 216 TALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMN 275

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T + VL+AC+  G  + G W                                  EI
Sbjct: 276 PNHITFLAVLSACSHSGLSERG-W----------------------------------EI 300

Query: 265 FDMMSELNVIA-----WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           F  M   N I      +  MI   G  G   EA+ L   +R    +P    + A+L+AC 
Sbjct: 301 FQSMGRDNRIKPRAMHYACMIELMGREGLLDEALAL---IRGAPFKPTANMWAALLTACR 357

Query: 320 HAGLVQEGHRV--FASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFV 367
               V E   +  FA+  + YG+ P  + +++ +++++  AG L EA   V
Sbjct: 358 ----VNENFELGKFAA-EKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVV 403


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/558 (38%), Positives = 328/558 (58%), Gaps = 6/558 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++ A  + +GY     +   L+++    G +  A+++F  + + D   +NT+I   +K 
Sbjct: 183 REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQ 242

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             +T +L  ++RM  ++  P+  TF  ++ +C +L  L  GRA+H  V   GY+SDL + 
Sbjct: 243 GAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIG 302

Query: 145 AALVNFYAK-SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             L+N Y K S++++ AR+VF+R+  + V+ WN +I  Y Q G AK+A+ +F  M+   V
Sbjct: 303 NVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENV 362

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            P+  T   VL+ACA LG    G+ VH  I       +VVL  SL+NMY RCG++     
Sbjct: 363 APNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVG 422

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +F  + + ++++W+ +I+ Y  HG+    +E F  +   G+  ++VT V+ LSAC+H G+
Sbjct: 423 VFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGM 482

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           ++EG + F SM  ++GL P   H +CMVDL  RAG L  A   + D +   P    WT++
Sbjct: 483 LKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHD-MPFLPDAVAWTSL 541

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYV-MLSNIYALAGRMDRVEVVRNIMIQKGL 442
           L  CK+H +      VA+ L  +E E+    V +LSN+YA AGR D V   RN   ++  
Sbjct: 542 LSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN---RRAA 598

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
           +K+ G S +E++   + F  GDKSHP    I   +  L  + ++AGYVP+    +H ++E
Sbjct: 599 RKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKE 658

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           EE+E  L YHSEKLA+A+GL+ T PG  + IVKNLR CVDCH+A KFIS    R+I+VRD
Sbjct: 659 EEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRD 718

Query: 563 RLRFHHFKRGSCSCLDYW 580
             RFHHF+ GSCSC DYW
Sbjct: 719 STRFHHFENGSCSCKDYW 736



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 161/287 (56%), Gaps = 4/287 (1%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A  +F  I  P+S  +  ++   ++     ++L +YRRM++  + P    F   I
Sbjct: 6   GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAI 65

Query: 114 KSCAHLSILNLGRAVHCHVFVSGY-DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
             C+    L  G+ +H  +  +   + D+ +  AL+  YA+  ++++ARK FD M  K++
Sbjct: 66  GVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTL 125

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLM---RDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           V WN++I+GY +NG  + A+ ++  M      G+ PD+ T    L AC+ +GDI  GR +
Sbjct: 126 VTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREI 185

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
               V  G   + ++  +LINMY++CG++  AR++FD +   +VIAW  MISGY   G  
Sbjct: 186 EARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAA 245

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           T+A+ELF RM  +  +PN VTF+ +L+AC +   +++G  +   +++
Sbjct: 246 TQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKE 292



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 193/362 (53%), Gaps = 13/362 (3%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN-- 101
           T L+++      +  A++ F  +       +N LI   S+      +L  Y+ M+  +  
Sbjct: 98  TALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPE 157

Query: 102 -ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
            + P   TFS+ + +C+ +  ++ GR +      SGY SD  VQ AL+N Y+K  +++ A
Sbjct: 158 GMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESA 217

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
           RKVFDR+ ++ V+AWN+MISGY + G A +A+ LF  M      P+  T + +L AC  L
Sbjct: 218 RKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNL 277

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC-GNVSKAREIFDMMSELNVIAWTAM 279
            D++ GR +H  +   G + ++V+   L+NMY +C  ++ +AR++F+ +   +VI W  +
Sbjct: 278 EDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNIL 337

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQ 336
           I  Y  +G   +A+++F +M+   V PN +T   VLSACA  G  ++G   H + AS R 
Sbjct: 338 IVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRC 397

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
           +  ++  +E+   +++++ R G L++       +     +   W+ ++ A   H +   G
Sbjct: 398 KADVV--LEN--SLMNMYNRCGSLDDTVGVFAAI--RDKSLVSWSTLIAAYAQHGHSRTG 451

Query: 397 VE 398
           +E
Sbjct: 452 LE 453



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 165/339 (48%), Gaps = 15/339 (4%)

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            Y K  +V  A  VF  +   + V+W  +++ + +NG  +EA+G +  M   G+ PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIV-GQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
            V  +  C+   D+  G+ +H  I+  Q L+ +++L T+LI MYARC ++  AR+ FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRM---RAHGVRPNNVTFVAVLSACAHAGLVQ 325
            +  ++ W A+I+GY  +G    A++++  M      G++P+ +TF + L AC+  G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 326 EGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           +G  + A ++   Y     V++   +++++ + G L  A K V D +  +   A W  M+
Sbjct: 181 QGREIEARTVASGYASDSIVQN--ALINMYSKCGSLESARK-VFDRLKNRDVIA-WNTMI 236

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
                +       +  E    + P +P   V ++ I  L    +  ++ +   I + +K+
Sbjct: 237 SG---YAKQGAATQALELFQRMGPNDPKPNV-VTFIGLLTACTNLEDLEQGRAIHRKVKE 292

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
           H GY + ++   N L +M  K   +  E  Q  + L  R
Sbjct: 293 H-GYES-DLVIGNVLLNMYTKCSSSLEEARQVFERLRTR 329


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/529 (38%), Positives = 327/529 (61%), Gaps = 19/529 (3%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   ++ +I   ++   S ++L  +++MI+    P++ T  +++ +CA L  L+ G  +H
Sbjct: 359 DVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIH 418

Query: 130 CHVFVSGYDS------------DLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAW 175
            +       S            DL V  AL++ Y+K  +   AR +FD +P  +++VV W
Sbjct: 419 AYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTW 478

Query: 176 NSMISGYEQNGFAKEAIGLFNLM--RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
             MI GY Q G + +A+ +F+ M  + + V P++ T  C+L ACA L  + +G+ +H ++
Sbjct: 479 TVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYV 538

Query: 234 VGQGLDVNVV--LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
                    V  +A  LI+MY++CG+V  AR +FD M + N ++WT+M+SGYGMHG G E
Sbjct: 539 TRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKE 598

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           A+++F +M+  G  P++++F+ +L AC+H+G+V +G   F  MR++Y ++   EH+ C++
Sbjct: 599 ALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVI 658

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411
           DL  R G L++A+K ++++  E P+  +W A+L AC++H N +L       L++++ EN 
Sbjct: 659 DLLARCGRLDKAWKTIQEMPME-PSAVIWVALLSACRVHSNVELAEYALNKLVNMKAEND 717

Query: 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTN 471
           G Y ++SNIYA A R   V  +R +M + G+KK  G S V+  +    F +GD+SHP + 
Sbjct: 718 GSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSP 777

Query: 472 EIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTI 531
           EIY  L+ L+GR +  GYVPE+  A+H++++EE+   L  HSEKLALA+GL+ TSPG  I
Sbjct: 778 EIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPI 837

Query: 532 RIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           RI KNLR+C DCHSA  +IS   + EIIVRD  RFHHFK GSCSC  YW
Sbjct: 838 RITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 122/566 (21%), Positives = 233/566 (41%), Gaps = 111/566 (19%)

Query: 23  PLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNS 82
           PL  + +H  V+       ++   L+       ++  +R+    PSP +  +N L+  + 
Sbjct: 70  PLAPLPSHSYVSPKSLGTGVVASYLACGATKDALSVLERV---TPSP-AVWWNLLVREHI 125

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
           K      ++    RM+ +   P ++T    +K+C  L     GRA+H  +  +G++S++ 
Sbjct: 126 KEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVF 185

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDK---SVVAWNSMISGYEQNGFAKEAIGLFNLM- 198
           V  ALV  Y++  +++ A  VFD +  K    V++WNS+++ + +    + A+ LF+ M 
Sbjct: 186 VCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMS 245

Query: 199 -----RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
                +      D  + V +L ACA L  +   + +H + +  G   +  +  +LI+ YA
Sbjct: 246 MIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYA 305

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH----------- 302
           +CG+++ A ++F++M   +V++W AM++GY   G    A ELF  MR             
Sbjct: 306 KCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSA 365

Query: 303 ------------------------GVRPNNVTFVAVLSACAHAGLVQEGH---------- 328
                                   G  PN+VT +++LSACA  G + +G           
Sbjct: 366 VIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKC 425

Query: 329 ------------------------------RVFASMRQEYGLLPGVEHHV----CMVDLF 354
                                         R F + R  +  +P  E +V     M+  +
Sbjct: 426 LLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGY 485

Query: 355 GRAGLLNEAYKFVKDVIGEKP---APAVWT--AMLGACKMHKNFDLGVEVAEHLLSVEPE 409
            + G  N+A K   ++I  KP   AP  +T   +L AC       +G ++  ++      
Sbjct: 486 AQYGDSNDALKIFSEMI-SKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEY 544

Query: 410 NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPN 469
            P  Y + + +  +  +   V+  RN+      +  V ++++           G   H  
Sbjct: 545 EPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSM---------MSGYGMHGR 595

Query: 470 TNEIYQYLDELMGRCREAGYVPESES 495
             E     D++    ++AG+VP+  S
Sbjct: 596 GKEALDIFDKM----QKAGFVPDDIS 617


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/535 (38%), Positives = 324/535 (60%), Gaps = 9/535 (1%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           ++S     G ++ A+R+F   P  D F +  ++    +     ++  ++  M V N    
Sbjct: 238 MISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISY 297

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           N   +  ++    +    L  A+ C   +S +++       ++  Y ++  +  ARK+FD
Sbjct: 298 NAMLAGYVQYKKMVIAGELFEAMPCRN-ISSWNT-------MITGYGQNGGIAQARKLFD 349

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP +  V+W ++ISGY QNG  +EA+ +F  M+  G + + +T  C L+ CA +  ++L
Sbjct: 350 MMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALEL 409

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ VH  +V  G +    +  +L+ MY +CG+  +A ++F+ + E +V++W  MI+GY  
Sbjct: 410 GKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYAR 469

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           HG+G +A+ LF  M+  GV+P+ +T V VLSAC+H+GL+  G   F SM ++Y + P  +
Sbjct: 470 HGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSK 529

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ CM+DL GRAG L EA   ++++  + P  A W A+LGA ++H N +LG + AE +  
Sbjct: 530 HYTCMIDLLGRAGRLEEAENLMRNMPFD-PGAASWGALLGASRIHGNTELGEKAAEMVFK 588

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           +EP+N G YV+LSN+YA +GR   V  +R+ M + G++K  GYS VEV  K + FS+GD 
Sbjct: 589 MEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDC 648

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
            HP  + IY +L+EL  + R  GYV  ++  +H++EEEE+E+ L+YHSEKLA+AFG++  
Sbjct: 649 FHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTI 708

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             G  IR++KNLR+C DCH+AIK IS    R II+RD  RFHHF  G CSC DYW
Sbjct: 709 PAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 125/266 (46%), Gaps = 20/266 (7%)

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
           PD   +N  I  + + N   DS L   R+  S    S+ +++A+I      +  +L R  
Sbjct: 44  PDIVTWNKAISSHMR-NGHCDSAL---RVFNSMPRRSSVSYNAMISGYLRNAKFSLAR-- 97

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
              +F    + DL     ++  Y ++  +  A K+FD MP K VV+WN+M+SGY QNGF 
Sbjct: 98  --DLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFV 155

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
            EA  +FN M     + +S +   +LAA    G +   R + E       +  ++    L
Sbjct: 156 DEAREVFNKM----PHRNSISWNGLLAAYVHNGRLKEARRLFE----SQSNWELISWNCL 207

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           +  Y +   +  AR++FD M   +VI+W  MISGY   G  ++A  LF+      V    
Sbjct: 208 MGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDV---- 263

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASM 334
            T+ A++S     G+V E  + F  M
Sbjct: 264 FTWTAMVSGYVQNGMVDEARKYFDEM 289



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 123/275 (44%), Gaps = 75/275 (27%)

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
           D D+      ++ + ++ + D A +VF+ MP +S V++N+MISGY +N         F+L
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRN-------AKFSL 95

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
            RD                  ++ + DL  W            NV+L       Y R   
Sbjct: 96  ARDL---------------FDKMPERDLFSW------------NVMLTG-----YVRNRR 123

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           + +A ++FD+M + +V++W AM+SGY  +G+  EA E+F++M       N++++  +L+A
Sbjct: 124 LGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKM----PHRNSISWNGLLAA 179

Query: 318 CAHAGLVQEGHRVFASM------------------------RQEYGLLP--GVEHHVCMV 351
             H G ++E  R+F S                         RQ +  +P   V     M+
Sbjct: 180 YVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMI 239

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAML 384
             + + G L++A    K +  E P   V  WTAM+
Sbjct: 240 SGYAQVGDLSQA----KRLFNESPIRDVFTWTAMV 270



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/169 (19%), Positives = 71/169 (42%), Gaps = 12/169 (7%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH  ++ AG+     +   LL +    G    A  +F  I   D   +NT+I   ++ 
Sbjct: 411 KQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARH 470

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            F   +L+ +  M  + + P   T   V+ +C+H  +++ G       +    D D +V+
Sbjct: 471 GFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTE-----YFYSMDRDYNVK 525

Query: 145 AA------LVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMISGYEQNG 186
                   +++   ++  ++ A  +   MP D    +W +++     +G
Sbjct: 526 PTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHG 574


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/559 (37%), Positives = 325/559 (58%), Gaps = 7/559 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H+  I  G+     +   L+ +    G++  AQRI   I   D   + ++I    + 
Sbjct: 365 EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQH 424

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            F  ++L  ++ M    I P N   ++ I +CA +  ++ G  +H  V+VSGY +D+ + 
Sbjct: 425 EFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIW 484

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             LV  YA+      A   F+ +  K  + WN +ISG+ Q+G  +EA+ +F  M   G  
Sbjct: 485 NGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAK 544

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +  T V  ++A A L DI  G+ +H  ++  G      ++ +LI++Y +CG++  A+  
Sbjct: 545 YNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMD 604

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  M++ N ++W  +I+    HG G EA++LF +M+  G++P++VTFV VL+AC+H GLV
Sbjct: 605 FFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLV 664

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA---VWT 381
           +EG   F SM  E+G+ P  +H+ C+VD+ GRAG L+ A +FV+    E P PA   VW 
Sbjct: 665 EEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVE----EMPIPADSMVWR 720

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
            +L ACK+HKN ++G   A+HLL +EP +   YV+LSN YA+ G+    + +R IM  +G
Sbjct: 721 TLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRG 780

Query: 442 LKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE 501
           ++K  G S +EV    + F +GD+ HP  ++IY +L  L  R  + GY  E+    HE E
Sbjct: 781 VRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKE 840

Query: 502 EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
           +E ++ +   HSEKLA+AFGLM     M +R++KNLR+C DCH+ +KF S    REI++R
Sbjct: 841 KEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLR 900

Query: 562 DRLRFHHFKRGSCSCLDYW 580
           D  RFHHF  GSCSC DYW
Sbjct: 901 DVYRFHHFNNGSCSCGDYW 919



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 222/418 (53%), Gaps = 8/418 (1%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           A  A   +G R   + ++HA  I+ G    R +   L+ L    GF+  A+R+F  +   
Sbjct: 47  ALRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVR 106

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D+  +  ++   ++     +++  YR M  S + P+ Y  S+++ +C    +  LGR +H
Sbjct: 107 DNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIH 166

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
             V+  G+ S+  V  AL++ Y +  +  +A +VF  M     V +N++ISG+ Q G   
Sbjct: 167 VQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGD 226

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
            A+G+F+ M+  G++PDS T   +LAAC+ +GD+  G+ +H +++  G+ ++ ++  SL+
Sbjct: 227 RALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLL 286

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           ++Y + G++ +A +IFD     NV+ W  M+  YG      ++ ++F+RM A GVRPN  
Sbjct: 287 DLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKF 346

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           T+  +L  C H G +  G ++  S+  + G    +     ++D++ + G L++A + + D
Sbjct: 347 TYPCMLRTCTHTGEIGLGEQIH-SLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRIL-D 404

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLSNIYALAG 425
           +I EK   + WT+M+     H+     +E  + + +  + P+N G   + S I A AG
Sbjct: 405 MIEEKDVVS-WTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIG---LASAISACAG 458



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 189/370 (51%), Gaps = 3/370 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+  +Q+H++L+ AG      M   LL L   +G I  A +IF      +  L+N +++ 
Sbjct: 260 LRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVA 319

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
             + +    S   + RM+ + + P+ +T+  ++++C H   + LG  +H     +G+ SD
Sbjct: 320 YGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSD 379

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           ++V   L++ Y+K   +D A+++ D + +K VV+W SMI+GY Q+ F KEA+  F  M+ 
Sbjct: 380 MYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQA 439

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G+ PD+      ++ACA +  +  G  +H  +   G   +V +   L+ +YARCG   +
Sbjct: 440 CGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKE 499

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A   F+ +     I W  +ISG+   G   EA+++F +M   G + N  TFV+ +SA A+
Sbjct: 500 AFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASAN 559

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
              +++G ++ A + +  G     E    ++ L+G+ G + +A     ++   K     W
Sbjct: 560 LADIKQGKQIHARVIKT-GYTSETEISNALISLYGKCGSIEDAKMDFFEMT--KRNEVSW 616

Query: 381 TAMLGACKMH 390
             ++  C  H
Sbjct: 617 NTIITCCSQH 626



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 191/382 (50%), Gaps = 6/382 (1%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P      +IL A  + +  Q    +H  +   G+     +   L+SL         A R+
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRV 200

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   DS  FNTLI  +++      +L  +  M +S +SP + T ++++ +C+ +  L
Sbjct: 201 FCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDL 260

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+ +H ++  +G   D  ++ +L++ Y KS +++ A ++FD     +VV WN M+  Y
Sbjct: 261 RKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAY 320

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q     ++  +F  M   GV P+  T  C+L  C   G+I LG  +H   +  G   ++
Sbjct: 321 GQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDM 380

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            ++  LI+MY++ G + KA+ I DM+ E +V++WT+MI+GY  H +  EA+E F  M+A 
Sbjct: 381 YVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQAC 440

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G+ P+N+   + +SACA    V +G ++ A +    G    V     +V L+ R G+  E
Sbjct: 441 GIWPDNIGLASAISACAGIKAVHQGSQIHARVYVS-GYSADVSIWNGLVYLYARCGISKE 499

Query: 363 AYKFVKDVIGEKPAPAVWTAML 384
           A+   + +  E      W  ++
Sbjct: 500 AFSSFEAI--EHKEGITWNGLI 519



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           +K  +Q+HA +I  GY     +   L+SL    G I  A+  FF +   +   +NT+I  
Sbjct: 563 IKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITC 622

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            S+     ++L  + +M    + PS+ TF  V+ +C+H+ ++  G    C+      +  
Sbjct: 623 CSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGL---CYFKSMSNEHG 679

Query: 141 LHVQ----AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMIS 180
           +H +    A +V+   ++  +D A++  + MP     + W +++S
Sbjct: 680 IHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLS 724


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/578 (35%), Positives = 333/578 (57%), Gaps = 4/578 (0%)

Query: 6    PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
            P+     +++ A   L  L   + +HA +   G+    ++   L+++    G +    R+
Sbjct: 429  PNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRV 488

Query: 63   FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
            F    + D   +N L+            L  + +M+    +P+ YTF ++++SC+ LS +
Sbjct: 489  FEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDV 548

Query: 123  NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            +LG+ VH  +  +  D +  V  ALV+ YAK+  ++ A  +F+R+  + + AW  +++GY
Sbjct: 549  DLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGY 608

Query: 183  EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
             Q+G  ++A+  F  M+  GV P+  T    L+ C+++  +D GR +H   +  G   ++
Sbjct: 609  AQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDM 668

Query: 243  VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
             +A++L++MYA+CG V  A  +FD +   + ++W  +I GY  HG G +A++ F  M   
Sbjct: 669  FVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDE 728

Query: 303  GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
            G  P+ VTF+ VLSAC+H GL++EG + F S+ + YG+ P +EH+ CMVD+ GRAG  +E
Sbjct: 729  GTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHE 788

Query: 363  AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
               F+++ +       +W  +LGACKMH N + G   A  L  +EPE   +Y++LSN++A
Sbjct: 789  VESFIEE-MKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFA 847

Query: 423  LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
              G  D V  VR +M  +G+KK  G S VEV+ + ++F   D SHP   EI+  L +L  
Sbjct: 848  AKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQ 907

Query: 483  RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
            +    GY P ++  +H + + E++  L YHSE+LALAF L+ TS   TIRI KNLR+C D
Sbjct: 908  KLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGD 967

Query: 543  CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            CH  +K IS  TN+E++VRD   FHHFK GSCSC ++W
Sbjct: 968  CHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/512 (25%), Positives = 232/512 (45%), Gaps = 39/512 (7%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+  Q VH+  I  G      +   L+ +    G    A ++F  I  PD   ++ +I  
Sbjct: 346 LRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITC 405

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
             +   S ++   ++RM  S + P+ +T ++++ +   L  L  G ++H  V   G++ D
Sbjct: 406 LDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYD 465

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
             V  ALV  Y K  +V    +VF+   ++ +++WN+++SG+  N      + +FN M  
Sbjct: 466 NTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLA 525

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G NP+  T + +L +C+ L D+DLG+ VH  IV   LD N  + T+L++MYA+   +  
Sbjct: 526 EGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLED 585

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A  IF+ + + ++ AWT +++GY   G G +AV+ F +M+  GV+PN  T  + LS C+ 
Sbjct: 586 AETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSR 645

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
              +  G R   SM  + G    +     +VD++ + G + +A      ++        W
Sbjct: 646 IATLDSG-RQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVS--W 702

Query: 381 TAMLGACKMH-------KNFD--------------LGVEVAEHLLSVEPENPGHYVMLSN 419
             ++     H       K F+              +GV  A   + +  E   H+  LS 
Sbjct: 703 NTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSK 762

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           IY +   ++    + +I+ + G K H   S +E                 T+ +  + + 
Sbjct: 763 IYGITPTIEHYACMVDILGRAG-KFHEVESFIE-------------EMKLTSNVLIW-ET 807

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRY 511
           ++G C+  G +   E A  +L E E E    Y
Sbjct: 808 VLGACKMHGNIEFGERAAMKLFELEPEIDSNY 839



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 214/442 (48%), Gaps = 18/442 (4%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + +H  +I +G      +   L+++    G   YA ++F  IP  D   +  LI      
Sbjct: 148 KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAE 207

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            + + ++  +  M    +  + +T++  +K+C+    L  G+ VH      G  SDL V 
Sbjct: 208 GYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVG 267

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           +ALV+ YAK   + +A +VF  MP ++ V+WN++++G+ Q G A++ + LF  M    +N
Sbjct: 268 SALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEIN 327

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
               T   VL  CA  G++  G+ VH   +  G +++  ++  L++MY++CG    A ++
Sbjct: 328 FSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKV 387

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  + + +V++W+A+I+     G   EA E+F RMR  GV PN  T  +++SA    G +
Sbjct: 388 FVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDL 447

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
             G  + A + + YG     ++ VC  +V ++ + G + +  +  +           W A
Sbjct: 448 YYGESIHACVCK-YGF--EYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLIS--WNA 502

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA-------GRMDRVEVVRN 435
           +L     ++  D G+ +   +L+ E  NP  Y  +S + + +       G+    ++V+N
Sbjct: 503 LLSGFHDNETCDTGLRIFNQMLA-EGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN 561

Query: 436 IMIQKGLKKHVGYSTVEVDQKN 457
            +        VG + V++  KN
Sbjct: 562 SLDGNDF---VGTALVDMYAKN 580



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 181/363 (49%), Gaps = 5/363 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVHA  I  G      + + L+ L    G +  A+R+F C+P  ++  +N L+   ++ 
Sbjct: 249 KQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQM 308

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             +   L  + RM  S I+ S +T S V+K CA+   L  G+ VH      G + D  + 
Sbjct: 309 GDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFIS 368

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             LV+ Y+K      A KVF R+ D  VV+W+++I+  +Q G ++EA  +F  MR  GV 
Sbjct: 369 CCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVI 428

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T   +++A   LGD+  G  +H  +   G + +  +  +L+ MY + G+V     +
Sbjct: 429 PNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRV 488

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+  +  ++I+W A++SG+  +      + +F++M A G  PN  TF+++L +C+    V
Sbjct: 489 FEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDV 548

Query: 325 QEGHRVFASMRQEYGLLPGVEH-HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
             G +V A + +    L G +     +VD++ +   L +A      +I  K     WT +
Sbjct: 549 DLGKQVHAQIVKNS--LDGNDFVGTALVDMYAKNRFLEDAETIFNRLI--KRDLFAWTVI 604

Query: 384 LGA 386
           +  
Sbjct: 605 VAG 607



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 149/276 (53%), Gaps = 3/276 (1%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           +S ++++CA    LN G+A+H  V  SG + D H+  +LVN YAK  + + A KVF  +P
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           ++ VV+W ++I+G+   G+   A+ LF  MR  GV  +  T    L AC+   D++ G+ 
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           VH   +  G   ++ + ++L+++YA+CG +  A  +F  M + N ++W A+++G+   G 
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             + + LF RM    +  +  T   VL  CA++G ++ G ++  S+    G         
Sbjct: 311 AEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG-QIVHSLAIRIGCELDEFISC 369

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           C+VD++ + GL  +A K    +  E P    W+A++
Sbjct: 370 CLVDMYSKCGLAGDALKVFVRI--EDPDVVSWSAII 403


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/578 (37%), Positives = 328/578 (56%), Gaps = 36/578 (6%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           RS S    ++SL    G +  A  +F  +P      +N +I   ++   +  +L F+ RM
Sbjct: 226 RSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRM 285

Query: 98  I-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           +  S ++P  +T ++V+ +CA+L ++++G+ VH ++  S       V  AL++ YAKS +
Sbjct: 286 LSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGS 345

Query: 157 VDVARKV---------------------------------FDRMPDKSVVAWNSMISGYE 183
           V+ AR V                                 FD M ++ VVAW +MI GYE
Sbjct: 346 VENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYE 405

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG   EA+ LF LM   G  P+S T   VL+ CA L  ++ G+ +H   +    + +  
Sbjct: 406 QNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSS 465

Query: 244 LATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           ++ S++ MYAR G++  AR +FD +      + WT+MI     HG G +AV LF  M   
Sbjct: 466 VSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRV 525

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV+P+ +TFV VLSAC H G V EG R F  ++ ++G++P + H+ CMVDL  RAGL +E
Sbjct: 526 GVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSE 585

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A +F++ +  E P    W ++L AC++HKN DL    AE LLS++P N G Y  LSN+Y+
Sbjct: 586 AQEFIQQMPVE-PDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYS 644

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             GR +    +      K +KK  G+S   +  + ++F   D  HP  + +Y+   ++  
Sbjct: 645 ACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWD 704

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             ++AG+VP+ +S +H++++E +E  L  HSEKLA+AFGL+ T    T+RI+KNLR+C D
Sbjct: 705 DIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCND 764

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+AIKFIS   +REII+RD  RFHHFK G CSC DYW
Sbjct: 765 CHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 205/427 (48%), Gaps = 69/427 (16%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LLSL   +G +  A+ +F  +P  D   +  +++  ++     +++  +  M+   +SP+
Sbjct: 102 LLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPT 161

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            +T + V+ SCA      +GR VH  V   G  S + V  +++N Y K  + + AR VF+
Sbjct: 162 QFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFE 221

Query: 166 RMPDKSVVAWNSMIS-------------------------------GYEQNGFAKEAIGL 194
           RMP++SV +WN+M+S                               GY QNG   +A+  
Sbjct: 222 RMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWF 281

Query: 195 FNLMRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFI-------VGQ---------- 236
           F+ M  +  + PD  T   VL+ACA LG + +G+ VH +I       +GQ          
Sbjct: 282 FSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYA 341

Query: 237 ---------GL-------DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
                    G+       D+NV+  T+L+  Y + G++  ARE+FD+MS  +V+AWTAMI
Sbjct: 342 KSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMI 401

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF-ASMRQEYG 339
            GY  +G+  EA+ELF  M   G  PN+ T  AVLS CA    ++ G ++   ++R    
Sbjct: 402 VGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQE 461

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
               V + +  V ++ R+G L  A + V D +  +     WT+M+ A   H   +  V +
Sbjct: 462 QSSSVSNSI--VTMYARSGSLPWARR-VFDRVHWRKETVTWTSMIVALAQHGLGEDAVGL 518

Query: 400 AEHLLSV 406
            E +L V
Sbjct: 519 FEEMLRV 525



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 67/335 (20%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           +L++ YAKS  +  AR VF  MP++  V+W  M+ G  + G   EAI +F  M   G++P
Sbjct: 101 SLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSP 160

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
              T   VL++CA      +GR VH F+V  GL   V +A S++NMY +CG+   AR +F
Sbjct: 161 TQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVF 220

Query: 266 DMMSELNVIAWTAMIS-------------------------------GYGMHGYGTEAVE 294
           + M E +V +W AM+S                               GY  +G   +A+ 
Sbjct: 221 ERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALW 280

Query: 295 LFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFA------------------SMR 335
            F RM ++  + P+  T  +VLSACA+ G+V  G +V A                  SM 
Sbjct: 281 FFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMY 340

Query: 336 QEYGLLP---GVEHHVCMVDL-----------FGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
            + G +    GV     M DL           + + G +  A +   DV+  +   A WT
Sbjct: 341 AKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMF-DVMSNRDVVA-WT 398

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
           AM+   + + + D  +E+   ++   PE P  Y +
Sbjct: 399 AMIVGYEQNGHNDEAMELFRLMIRSGPE-PNSYTV 432



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 7/165 (4%)

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           NV    SL+++YA+ G ++ AR +F  M E + ++WT M+ G    G   EA+++F  M 
Sbjct: 95  NVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMV 154

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G+ P   T   VLS+CA       G +V  S   + GL   V     +++++G+ G  
Sbjct: 155 TDGLSPTQFTLTNVLSSCAATEARGVGRKVH-SFVVKLGLSSCVPVANSVLNMYGKCGDA 213

Query: 361 NEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHL 403
             A    + V    P  +V  W AM+         DL + + E++
Sbjct: 214 ETA----RAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENM 254



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/183 (19%), Positives = 87/183 (47%), Gaps = 6/183 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+S    A+L     L  L+   Q+H   I +   +S S+   ++++   +G + +A+R
Sbjct: 426 EPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARR 485

Query: 62  IFFCIP-SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           +F  +    ++  + ++I+  ++     D++  +  M+   + P   TF  V+ +C H+ 
Sbjct: 486 VFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVG 545

Query: 121 ILNLGRAVHCHVFVS-GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSM 178
            ++ G+     +    G   ++   A +V+  A++     A++   +MP +   +AW S+
Sbjct: 546 FVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSL 605

Query: 179 ISG 181
           +S 
Sbjct: 606 LSA 608


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/515 (42%), Positives = 302/515 (58%), Gaps = 10/515 (1%)

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS-CAHLSILNLGRA 127
           P +F  N+++   S     +D+L F RRM       + +T + ++K  CA    L   R 
Sbjct: 88  PSTFQCNSILRVLSD---PSDALRFLRRMRALGRRGNAFTLAILLKPRCA----LAHARQ 140

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H +V   G+  D  +  +L+  YA   + D ARK+F  MP +  VAWN +IS   +N  
Sbjct: 141 LHANVVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRR 200

Query: 188 AKEAIGLFNLMR--DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
            K+A+ LF  MR  D G  PD  TC+ +L AC  LG +D G  V  +    G    + + 
Sbjct: 201 TKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVR 260

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
            SLI MY+RCG V KA  +F    + +V+ W+AMISG   +G+G +A+  F  M    V 
Sbjct: 261 NSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVA 320

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           P+  TF  VLSAC+H+GLV EG R F  MR EYGL P V H+ C+VDL GRAGLL+EAY+
Sbjct: 321 PDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYE 380

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
            V + +   P   +W  +LGAC++H + DLG  V  +L+ ++ +  G YV+L N YA  G
Sbjct: 381 LVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLLNTYAAVG 440

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
              +V  VR +M +KG++   G +TVE + + Y F   D +HP   EIY+ L+E+  + R
Sbjct: 441 EWSKVSEVRKLMQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRKVEIYEKLNEINKQLR 500

Query: 486 EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
            AGYVP   S +H+L+ E +E +L YHSEKLA+AF L+ T     IR+ KNLR+CVDCH+
Sbjct: 501 IAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLVTPQNRPIRLAKNLRVCVDCHN 560

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             K  S   NR +IVRDR RFHHF+ G CSC DYW
Sbjct: 561 FTKVFSGIYNRLVIVRDRTRFHHFQGGKCSCNDYW 595


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/623 (34%), Positives = 353/623 (56%), Gaps = 48/623 (7%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP + A   IL A   L   QQ   +H +++ +G+  +  +   L+ L    G +  A +
Sbjct: 335 QPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVK 394

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLS 120
           +F  +   D  +++++I          ++L  + +MI V     S Y  S   +    L+
Sbjct: 395 LFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLA 454

Query: 121 ILNLGRAVH------------------------------------CHVFVSGYDSDLHVQ 144
           I +   A H                                     ++F  G   D  + 
Sbjct: 455 ITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRIL 514

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
                 Y   N +D A  VF+ +P+     WN MI G+  +G    ++ L++ M + G+ 
Sbjct: 515 TKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLK 574

Query: 205 PDST-------TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           PD++       + + VL AC  LG +  G W H +++  G + ++++AT++++MY++CG+
Sbjct: 575 PDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGS 634

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           +  AR +FD  +  +++ W+AMI+ YG+HG+G +A++LF +M   GVRP++VTF  VLSA
Sbjct: 635 LDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSA 694

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           C+H+GL++EG   F  M +E+ +   + ++ CMVDL GRAG L+EA   ++++  E P  
Sbjct: 695 CSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVE-PDA 753

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
           ++W ++LGAC++H N DL  ++A+HL  ++P + G++V+LSNIYA   R + VE VR +M
Sbjct: 754 SIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMM 813

Query: 438 IQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM 497
            ++G  K  G+S VE D + + F +GD+SHP   ++Y  L+EL    +  GYVP ++  +
Sbjct: 814 ARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVL 873

Query: 498 HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNRE 557
           H++EEE +E +L YHSE+LA+AFGL+ TSPG T+RI KNLR+C DCH+AIK IS   NR 
Sbjct: 874 HDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRV 933

Query: 558 IIVRDRLRFHHFKRGSCSCLDYW 580
           I+VRD  RFH F+ G CSC DYW
Sbjct: 934 ILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 148/313 (47%), Gaps = 40/313 (12%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           + + Q+H+ +   G        TKL SL      +  A+++F   P P+  L+N+ +   
Sbjct: 18  RSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSY 77

Query: 82  SKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-- 138
            +     ++L  +  MI  +  +P N+T    +K+CA L +L LG+ +H   F    D  
Sbjct: 78  CREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHG--FAKKNDEI 135

Query: 139 -SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
            SD+ V +ALV  Y+K   +  A KVF+       V W SM++GY+QN   +EA+ LF+ 
Sbjct: 136 GSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQ 195

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M              V+  C                     D ++ L  SL+N+YA+ G 
Sbjct: 196 M--------------VMMDC--------------------FDGDLPLVNSLLNLYAKTGC 221

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
              A  +F  M E +VI+W+ MI+ Y  +    EA+ LFH M      PN+VT V+ L A
Sbjct: 222 EKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQA 281

Query: 318 CAHAGLVQEGHRV 330
           CA +  ++EG ++
Sbjct: 282 CAVSRNLEEGKKI 294



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 128/258 (49%), Gaps = 35/258 (13%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN 101
           ++  LL+L    G    A  +F  +P  D   ++T+I   +    + ++L  +  MI   
Sbjct: 208 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKR 267

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
             P++ T  + +++CA                                    S N++  +
Sbjct: 268 FEPNSVTVVSALQACA-----------------------------------VSRNLEEGK 292

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           K+      K VV+W +++SGY QNG A +++G+F  M   G+ PD+   V +LAA ++LG
Sbjct: 293 KIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELG 352

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
                  +H ++V  G + NV +  SLI +Y++CG++  A ++F  M   +V+ W++MI+
Sbjct: 353 IFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIA 412

Query: 282 GYGMHGYGTEAVELFHRM 299
            YG+HG G EA+E+F +M
Sbjct: 413 AYGIHGRGGEALEIFDQM 430



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 161/363 (44%), Gaps = 72/363 (19%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           + L+ L    G +  A ++F     PD+ L+ +++    + N   ++L  + +M++ +  
Sbjct: 143 SALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDC- 201

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
                                            +D DL +  +L+N YAK+    +A  +
Sbjct: 202 ---------------------------------FDGDLPLVNSLLNLYAKTGCEKIAANL 228

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F +MP+K V++W++MI+ Y  N  A EA+ LF+ M +    P+S T V  L ACA   ++
Sbjct: 229 FSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNL 288

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
           + G+ +H+  V +                             D++S      W A++SGY
Sbjct: 289 EEGKKIHKIAVWK-----------------------------DVVS------WVALLSGY 313

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
             +G   +++ +F  M + G++P+ V  V +L+A +  G+ Q+   +   + +  G    
Sbjct: 314 AQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS-GFNSN 372

Query: 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
           V     +++L+ + G L +A K  K +I       +W++M+ A  +H      +E+ + +
Sbjct: 373 VFVGASLIELYSKCGSLGDAVKLFKGMIVRD--VVIWSSMIAAYGIHGRGGEALEIFDQM 430

Query: 404 LSV 406
           + V
Sbjct: 431 IQV 433


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/613 (35%), Positives = 351/613 (57%), Gaps = 40/613 (6%)

Query: 7   HSP---AYEAILKAGPRLKPL--QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           HSP   A ++ L +  R  P   +++HA +I +G          L+      G +  A +
Sbjct: 5   HSPTVLALKSQLFSLGRKNPFIAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALK 64

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  D   + T++   + +N    +      ++   + P ++ FS++IK+CA+L  
Sbjct: 65  LFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGS 124

Query: 122 LN--LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
           ++  LG+ +H    +S +  D  V+++LV+ YAK    D  R VFD + + S ++W +MI
Sbjct: 125 VHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMI 184

Query: 180 SGYE-------------------------------QNGFAKEAIGLFNLMRDFGVN-PDS 207
           SGY                                Q+G A +A+ LF  MR  GV+  D 
Sbjct: 185 SGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADP 244

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
                V+ ACA     +LG+ VH  ++  G +  + ++ +L++MYA+C +V  A+ IF  
Sbjct: 245 LVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCE 304

Query: 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG 327
           M   +V++WT++I G   HG   EA+ L+  M   GV+PN VTFV ++ AC+H GLV +G
Sbjct: 305 MRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKG 364

Query: 328 HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
             +F SM +++G+ P ++H+ C++DLF R+G L+EA   ++  +  KP    W A+L AC
Sbjct: 365 RALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIR-TMPVKPDEPTWAALLSAC 423

Query: 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVG 447
           K H N  + V +A+HLL ++PE+P  Y++LSNIYA AG  + V +VR +M  K +KK  G
Sbjct: 424 KHHGNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPG 483

Query: 448 YSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREY 507
           YS V++ ++  +F  G+ S P  +EI   + +L    R  GYVP++ S + +++++E+E 
Sbjct: 484 YSCVDLGREFQVFHAGEASQPMKDEILGLMTKLDSEMRRRGYVPDTSSVLLDMDQQEKER 543

Query: 508 SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFH 567
            L +HSE+LALA+GL++  PG TIRIVKNLR+C DCH+ +K IS  T+REI VRD  R+H
Sbjct: 544 QLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYH 603

Query: 568 HFKRGSCSCLDYW 580
           HFK G CSC D+W
Sbjct: 604 HFKDGKCSCNDFW 616


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/523 (39%), Positives = 315/523 (60%), Gaps = 13/523 (2%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   ++  I   ++     ++L   R+M+ S I P+  T  +V+  CA +  L  G+ +H
Sbjct: 329 DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIH 388

Query: 130 CHVFV-------SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNSMIS 180
           C+          +G+  +  V   L++ YAK   VD AR +FD +   ++ VV W  MI 
Sbjct: 389 CYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIG 448

Query: 181 GYEQNGFAKEAIGLFNLM--RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV-GQG 237
           GY Q+G A +A+ L + M   D    P++ T  C L ACA L  + +G+ +H + +  Q 
Sbjct: 449 GYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQ 508

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
             V + ++  LI+MYA+CG++S AR +FD M   N + WT++++GYGMHGYG EA+ +F 
Sbjct: 509 NAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFD 568

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
            MR  G + + VT + VL AC+H+G++ +G   F  M+  +G+ PG EH+ C+VDL GRA
Sbjct: 569 EMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRA 628

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           G LN A + ++++  E P P VW A L  C++H   +LG   AE +  +   + G Y +L
Sbjct: 629 GRLNAALRLIEEMPME-PPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLL 687

Query: 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL 477
           SN+YA AGR   V  +R++M  KG+KK  G S VE  +    F +GDK+HP+  EIYQ L
Sbjct: 688 SNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVL 747

Query: 478 DELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNL 537
            + M R ++ GYVPE+  A+H++++EE++  L  HSEKLALA+G++ T  G  IRI KNL
Sbjct: 748 LDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNL 807

Query: 538 RMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R+C DCH+A  ++S   + +II+RD  RFHHFK GSCSC  YW
Sbjct: 808 RVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 204/428 (47%), Gaps = 45/428 (10%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS--FLFNTLI 78
           +  ++ +H  L+  G   + ++ + L+S     G +++A  +    P  D+  + +N+LI
Sbjct: 41  ISQVKLIHQKLLSFGI-LTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLI 99

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
                   +   L  +  M   + +P NYTF  V K+C  +S +  G + H    V+G+ 
Sbjct: 100 RSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFI 159

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
           S++ V  ALV  Y++  ++  ARKVFD M    VV+WNS+I  Y + G  K A+ +F+ M
Sbjct: 160 SNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRM 219

Query: 199 -RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
             +FG  PD+ T V VL  CA LG   LG+ +H F V   +  N+ +   L++MYA+CG 
Sbjct: 220 TNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGM 279

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR----------------- 300
           + +A  +F  MS  +V++W AM++GY   G   +AV LF +M+                 
Sbjct: 280 MDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISG 339

Query: 301 ------------------AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLL 341
                             + G++PN VT ++VLS CA  G +  G  +   +++    L 
Sbjct: 340 YAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLR 399

Query: 342 P---GVEHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
               G E+ V   ++D++ +   ++ A      +  ++     WT M+G    H + +  
Sbjct: 400 KNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKA 459

Query: 397 VEVAEHLL 404
           +E+   + 
Sbjct: 460 LELLSEMF 467



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 197/437 (45%), Gaps = 56/437 (12%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P +  +  + KA   +  +   +  HA  +V G+  +  +   L+++      ++ A+++
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCAHLSI 121
           F  +   D   +N++I   +K      +L  + RM       P N T   V+  CA L  
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS---- 177
            +LG+ +HC    S    ++ V   LV+ YAK   +D A  VF  M  K VV+WN+    
Sbjct: 245 HSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAG 304

Query: 178 -------------------------------MISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
                                           ISGY Q G   EA+G+   M   G+ P+
Sbjct: 305 YSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV--------NVVLATSLINMYARCGNV 258
             T + VL+ CA +G +  G+ +H + +   +D+        N+V+   LI+MYA+C  V
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVI-NQLIDMYAKCKKV 423

Query: 259 SKAREIFDMMS--ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG--VRPNNVTFVAV 314
             AR +FD +S  E +V+ WT MI GY  HG   +A+EL   M       RPN  T    
Sbjct: 424 DTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCA 483

Query: 315 LSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           L ACA    ++ G ++ A ++R +   +P    + C++D++ + G +++A     +++ +
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSN-CLIDMYAKCGSISDARLVFDNMMAK 542

Query: 374 KPAPAVWTAMLGACKMH 390
                 WT+++    MH
Sbjct: 543 N--EVTWTSLMTGYGMH 557


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/547 (38%), Positives = 328/547 (59%), Gaps = 6/547 (1%)

Query: 30  HLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTD 89
           HL   G+     ++  L+++      +  A ++F  +P  +   + T+I   SK      
Sbjct: 38  HLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQK 97

Query: 90  SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
           +L     M+   + P+ YT+S+V+++C  +S +   R +HC +   G +SD++V++AL++
Sbjct: 98  ALELLVLMLRDGVRPNVYTYSSVLRACNGMSDV---RMLHCGIIKEGLESDVYVRSALID 154

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            +AK    + A  VFD M     + WNS+I G+ QN  +  A+ LF  M+  G   +  T
Sbjct: 155 VFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQAT 214

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
              VL AC  L  ++LG   H  IV    D +++L  +L++MY +CG++  AR +F+ M 
Sbjct: 215 LTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQMK 272

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
           E +VI W+ MISG   +GY  EA++LF  M++ G +PN +T V VL AC+HAGL+++G  
Sbjct: 273 ERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWY 332

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
            F SM++ YG+ PG EH+ CM+DL G+AG L++A K + ++  E P    W  +LGAC++
Sbjct: 333 YFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECE-PDAVTWRTLLGACRV 391

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
            +N  L    A+ +++++PE+ G Y +LSNIYA + + D VE +R  M   G+KK  G S
Sbjct: 392 QRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCS 451

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL 509
            +EV+++ + F +GD+SHP   E+ + L++L+ R    GYVPE+   + +LE E+ E SL
Sbjct: 452 WIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIGIGYVPETNFVLQDLEGEQMEDSL 511

Query: 510 RYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
           R+HSEKLALAFGLM       IRI KNLR+C DCH   K  S   NR I++RD +R+HHF
Sbjct: 512 RHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVFCKLASKLENRNIVIRDPIRYHHF 571

Query: 570 KRGSCSC 576
           + G CSC
Sbjct: 572 QDGKCSC 578



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 144/282 (51%), Gaps = 14/282 (4%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T+S +IK C     ++ G  +  H++ +G+   + +   L+N Y K N ++ A ++FD+M
Sbjct: 15  TYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQM 74

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
           P ++V++W +MIS Y +    ++A+ L  LM   GV P+  T   VL AC  + D+   R
Sbjct: 75  PQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDV---R 131

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +H  I+ +GL+ +V + ++LI+++A+ G    A  +FD M   + I W ++I G+  + 
Sbjct: 132 MLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNS 191

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGV 344
               A+ELF RM+  G      T  +VL AC    L++ G   H       Q+  L    
Sbjct: 192 RSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLIL---- 247

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
             +  +VD++ + G L +A +    +  ++     W+ M+  
Sbjct: 248 --NNALVDMYCKCGSLEDARRVFNQM--KERDVITWSTMISG 285



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 157/314 (50%), Gaps = 35/314 (11%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           +P+   Y ++L+A   +  ++ +H  +I  G      + + L+ +    G    A  +F 
Sbjct: 111 RPNVYTYSSVLRACNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFD 170

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            + + D+ ++N++I   ++ + S  +L  ++RM  +       T ++V+++C  L++L L
Sbjct: 171 EMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLEL 230

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G   H H+    YD DL +  ALV+ Y K  +++ AR+VF++M ++ V+ W++MISG  Q
Sbjct: 231 GMQAHVHIV--KYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQ 288

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           NG+++EA+ LF LM+  G  P+  T V VL AC+  G ++ G W +              
Sbjct: 289 NGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDG-WYY-------------- 333

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             S+  +Y     ++  RE +  M +L            G  G   +AV+L + M     
Sbjct: 334 FRSMKKLYG----INPGREHYGCMIDL-----------LGKAGKLDDAVKLLNEMEC--- 375

Query: 305 RPNNVTFVAVLSAC 318
            P+ VT+  +L AC
Sbjct: 376 EPDAVTWRTLLGAC 389



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 24/211 (11%)

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           ++  G+  DS T   ++  C     +  G  +   +   G    + L   LINMY +   
Sbjct: 4   LQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNL 63

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           ++ A ++FD M + NVI+WT MIS Y       +A+EL   M   GVRPN  T+ +VL A
Sbjct: 64  LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA 123

Query: 318 C--------AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK-FVK 368
           C         H G+++EG      +R              ++D+F + G   +A   F +
Sbjct: 124 CNGMSDVRMLHCGIIKEGLESDVYVRS------------ALIDVFAKLGEPEDALSVFDE 171

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
            V G+     VW +++G    +   D+ +E+
Sbjct: 172 MVTGD---AIVWNSIIGGFAQNSRSDVALEL 199


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/516 (42%), Positives = 304/516 (58%), Gaps = 40/516 (7%)

Query: 104 PSNYTFSAVIKSCAHLSILNLGR--------AVHCHVFVSGYDSDLHVQAALVNFYAKSN 155
           P NY+F+ ++++   L+              +VH      G+  D HVQ+  V+ YA + 
Sbjct: 192 PDNYSFTFLVRAATALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAG 251

Query: 156 NV-------------------------------DVARKVFDRMPDKSVVAWNSMISGYEQ 184
           +V                               D AR++FD MP +  VAWN+MI+GY  
Sbjct: 252 DVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVH 311

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
            G ++EA+ LF+ MR  G      T V  L ACAQLG ++ G+WVH     +G+ ++V L
Sbjct: 312 TGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTL 371

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
            T+LI+MY++CG V+ A E+FD M E NV  WT+ +SG  M+G G + + LF RM + GV
Sbjct: 372 GTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGV 431

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
            PN VTFV VL  C+ AGLV EG   F SM+  +G+ P +EH+ CMVDL+GRAG L++A 
Sbjct: 432 EPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAV 491

Query: 365 KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
            F+  +  E P   VW A+L A ++HKN +LG    + L+++E +N   +V+LSNIYA +
Sbjct: 492 NFINGMPLE-PHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADS 550

Query: 425 GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRC 484
                V  VRN+M  KG+KK  G S +EV  K + F +G K+HP   EI   L E+  R 
Sbjct: 551 QNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRL 610

Query: 485 REAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
           R  GY+  ++  + ++EEE++E ++  HSEKLA+AFGL+     M IRIVKNLR+C DCH
Sbjct: 611 RLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCH 670

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
              K IS   NREI++RDR RFHHFK G+CSC DYW
Sbjct: 671 DYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/566 (37%), Positives = 333/566 (58%), Gaps = 4/566 (0%)

Query: 16  KAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFN 75
           ++G  LK  ++VHA+ I  G   +  +   L+ +      + Y    F C+   D   + 
Sbjct: 361 RSGNLLKG-KEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWT 419

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
           T+I   ++  F  +++  +R++ V  +        +V+++C+ L   N  R +H +VF  
Sbjct: 420 TIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKR 479

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
              +D+ +Q A+VN Y +  ++D AR+ F+ +  K +V+W SMI+    NG   EA+ LF
Sbjct: 480 DL-ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELF 538

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             ++   + PDS   +  L+A A L  +  G+ +H F++ +G  +   +A+SL++MYA C
Sbjct: 539 YSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACC 598

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G V  +R++F  + + ++I WT+MI+  GMHG G +A+ LF +M    V P+++TF+A+L
Sbjct: 599 GTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALL 658

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
            AC+H+GL+ EG R F  M+  Y L P  EH+ CMVDL  R+  L EAY FV++ +  KP
Sbjct: 659 YACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRN-MPIKP 717

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
           +  +W A+LGAC +H N +LG   A+ LL  + EN G Y ++SNI+A  GR + VE VR 
Sbjct: 718 SSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRL 777

Query: 436 IMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRC-REAGYVPESE 494
            M   GLKK+ G S +EVD K + F   DKSHP T++IY  L +      ++ GY+ +++
Sbjct: 778 RMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTK 837

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
              H + EEE+   L  HSE+LAL +GL+ T  G  IRI KNLR+C DCH+  K  S  +
Sbjct: 838 FVFHNVSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVS 897

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
            R ++VRD  RFHHF+RG CSC D+W
Sbjct: 898 QRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 215/428 (50%), Gaps = 23/428 (5%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF--FCIPSPDSFLFNTLIIRNSK 83
           ++H   +  GYG    +   L+++    G +  A+ +F    +   D+  +N++I  +  
Sbjct: 166 EIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVA 225

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
                ++L  +RRM    ++ + YTF A ++     S + LG  +H  V  S + +D++V
Sbjct: 226 EGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYV 285

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             AL+  YAK   ++ A +VF+ M  +  V+WN+++SG  QN    +A+  F  M++ G 
Sbjct: 286 ANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQ 345

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            PD  + + ++AA  + G++  G+ VH + +  GLD N+ +  +L++MYA+C  V     
Sbjct: 346 KPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGH 405

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
            F+ M E ++I+WT +I+GY  + +  EA+ LF +++  G+  + +   +VL AC+    
Sbjct: 406 AFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS---- 461

Query: 324 VQEGHRVFASMRQEYGL-----LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
              G +    +R+ +G      L  +     +V+++G  G ++ A +  + +  +     
Sbjct: 462 ---GLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVS- 517

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSNIYALA--GRMDRVEVVR 434
            WT+M+  C +H    L VE  E   S++  N  P    ++S + A A    + + + + 
Sbjct: 518 -WTSMITCC-VHNG--LPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIH 573

Query: 435 NIMIQKGL 442
             +I+KG 
Sbjct: 574 GFLIRKGF 581



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 168/343 (48%), Gaps = 7/343 (2%)

Query: 17  AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNT 76
           A   L   QQ+HA L+ +    S  + TKL+ +    G +  A ++F  +     F +N 
Sbjct: 58  AAKALPQGQQLHALLLKSHL--SAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNA 115

Query: 77  LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
           L+     +    +++  Y+ M V  ++    TF +V+K+C  L    LG  +H      G
Sbjct: 116 LMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCG 175

Query: 137 YDSDLHVQAALVNFYAKSNNVDVARKVFD--RMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
           Y   + V  AL+  Y K  ++  AR +FD   M  +  V+WNS+IS +   G   EA+ L
Sbjct: 176 YGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSL 235

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           F  M++ GV  ++ T V  L        + LG  +H  ++      +V +A +LI MYA+
Sbjct: 236 FRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAK 295

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CG +  A  +F+ M   + ++W  ++SG   +   ++A+  F  M+  G +P+ V+ + +
Sbjct: 296 CGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNL 355

Query: 315 LSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGR 356
           ++A   +G + +G  V A ++R   GL   ++    +VD++ +
Sbjct: 356 IAASGRSGNLLKGKEVHAYAIRN--GLDSNMQIGNTLVDMYAK 396



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 126/255 (49%), Gaps = 6/255 (2%)

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           NTL     K  F + +LL    +  +  S   +  S ++  C     L  G+ +H  +  
Sbjct: 17  NTLNKGTLKPAFQSLTLLSTHPL--ATPSRLEHAHSLLLDLCVAAKALPQGQQLHALLLK 74

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
           S   + L  +  LV  Y K  ++  A KVFD M ++++ +WN+++  +  +G   EAI L
Sbjct: 75  SHLSAFLATK--LVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIEL 132

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           +  MR  GV  D+ T   VL AC  LG+  LG  +H   V  G    V +  +LI MY +
Sbjct: 133 YKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGK 192

Query: 255 CGNVSKAREIFD--MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
           CG++  AR +FD  MM + + ++W ++IS +   G   EA+ LF RM+  GV  N  TFV
Sbjct: 193 CGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFV 252

Query: 313 AVLSACAHAGLVQEG 327
           A L        V+ G
Sbjct: 253 AALQGVEDPSFVKLG 267


>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Brachypodium distachyon]
          Length = 884

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/514 (41%), Positives = 302/514 (58%), Gaps = 9/514 (1%)

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
           P +F  N+++    +    +D+L F RRM       + ++ + ++K C  LS     R +
Sbjct: 378 PSTFCCNSIL----RCLSESDALSFLRRMRTLGRRGNAFSLAILLKPCRTLS---HARQL 430

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H +V + G+  D  +  +L+  YA     D ARKVFD M  K  VAWN +I+ Y +N   
Sbjct: 431 HANVVIEGHLRDSLLATSLMRSYAICGVGDCARKVFDEMVMKDTVAWNVLITCYARNKRT 490

Query: 189 KEAIGLFNLMR--DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
           K+ + LF+ MR  +  V PD  TC+ +L AC  LG +D G  + E+ V  G    + +  
Sbjct: 491 KDTLWLFDEMRRGESEVKPDEVTCILLLQACTSLGALDFGEQIWEYAVEHGYGCELKVRN 550

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           S+I MY RCG V KA ++F    + +V+ W+AMI G   +G+G +A+  F  M   GV P
Sbjct: 551 SVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAMIMGLAANGFGEDAISAFEEMSRSGVVP 610

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           +  TF  VLSAC+H+GLV EG R F  MR EY ++P V H+ C+VDL GRAGLL+EAY+ 
Sbjct: 611 DGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYKMMPNVRHYGCIVDLMGRAGLLDEAYEL 670

Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
           V   +   P   +W  +LGAC++H + DLG +V  HL+ ++ +  G YV+L N YA AG 
Sbjct: 671 VVKEMKVAPDATIWRTLLGACRIHGHVDLGEKVISHLIELKAQQAGDYVLLLNTYAAAGD 730

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE 486
            ++V  VR +M +  ++   G +TVE++ + + F   D SHP   EIY  LDE+    R 
Sbjct: 731 WEKVAEVRKLMRENEIQTTPGCTTVELNGELHEFIADDASHPRKAEIYGKLDEINRHLRI 790

Query: 487 AGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSA 546
           AGYVP   S +H+L+ E +E +L YHSEKLA+AF L+       IR+ KNLR+CVDCH+ 
Sbjct: 791 AGYVPHVSSDLHDLDSEGKECALTYHSEKLAIAFALLVMPQRRPIRLAKNLRVCVDCHNF 850

Query: 547 IKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            K  S   NR +IVRDR RFHHF  G CSC DYW
Sbjct: 851 TKVFSGVYNRLVIVRDRTRFHHFNGGQCSCNDYW 884



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 169/365 (46%), Gaps = 23/365 (6%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           +LK    L   +Q+HA++++ G+ R   + T L+      G    A+++F  +   D+  
Sbjct: 417 LLKPCRTLSHARQLHANVVIEGHLRDSLLATSLMRSYAICGVGDCARKVFDEMVMKDTVA 476

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMI--VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           +N LI   ++   + D+L  +  M    S + P   T   ++++C  L  L+ G  +  +
Sbjct: 477 WNVLITCYARNKRTKDTLWLFDEMRRGESEVKPDEVTCILLLQACTSLGALDFGEQIWEY 536

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
               GY  +L V+ +++  Y +   V+ A +VF   P KSVV W++MI G   NGF ++A
Sbjct: 537 AVEHGYGCELKVRNSVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAMIMGLAANGFGEDA 596

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLIN 250
           I  F  M   GV PD  T   VL+AC+  G +D G R+         +  NV     +++
Sbjct: 597 ISAFEEMSRSGVVPDGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYKMMPNVRHYGCIVD 656

Query: 251 MYARCGNVSKAREIF--DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR--- 305
           +  R G + +A E+   +M    +   W  ++    +HG+    V+L  ++ +H +    
Sbjct: 657 LMGRAGLLDEAYELVVKEMKVAPDATIWRTLLGACRIHGH----VDLGEKVISHLIELKA 712

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQ-EYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
                +V +L+  A AG  ++   V   MR+ E    PG       V+L G      E +
Sbjct: 713 QQAGDYVLLLNTYAAAGDWEKVAEVRKLMRENEIQTTPGCT----TVELNG------ELH 762

Query: 365 KFVKD 369
           +F+ D
Sbjct: 763 EFIAD 767


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/534 (42%), Positives = 325/534 (60%), Gaps = 25/534 (4%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTD----SLLFYRRMIVS-NISPSNYTFS 110
           + YA R+F  I +P+SF++N LI   ++   STD    ++  Y RM+   ++    +TF 
Sbjct: 76  LRYAFRVFHQIENPNSFMWNALIRACAR---STDRKQHAIALYHRMLEQGSVMQDKHTFP 132

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
            V+K+CA+L  L+ G  +H  +   G+DSD+++  +LV+FYA  + +D A+ VFDRM ++
Sbjct: 133 FVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSER 192

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH 230
           S+V+WN +I  + + G    A+ LF  M+ F   PD  T   +  ACA +G + LG    
Sbjct: 193 SLVSWNVVIDAFVRFGEFDAALNLFGEMQKF-FEPDGYTIQSIANACAGMGSLSLG---- 247

Query: 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
             IV      +V+L TSL++MY +CG++  A ++F  M + +V +W +MI G+  HG   
Sbjct: 248 --IVN-----DVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVA 300

Query: 291 EAVELFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
            A+E F  M R   + PN +TFV VLSAC H GLV EG R F  M  EY + P +EH+ C
Sbjct: 301 AALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGC 360

Query: 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC-KMHKNFDLGVEVAEHLLSVEP 408
           +VDL  RAGL++EA   V + +  +P   +W ++L AC K +   +L  E+A  +L  E 
Sbjct: 361 LVDLLARAGLIDEALDVVSN-MPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEG 419

Query: 409 E-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSH 467
               G YV+LS +YA A R + V +VR +M  KG+ K  G S++E+D   + F  GD SH
Sbjct: 420 GVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSH 479

Query: 468 PNTNEIYQYLDELMGRCREAGYVPESESA-MHELEEEEREYSLRYHSEKLALAFGLMRTS 526
           P T EIY  LD +  R    GY P+S  A M +   + ++YSLR HSE+LA+AFGL++T 
Sbjct: 480 PQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTK 539

Query: 527 PGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           PGM IRI KNLR+C +CH   K IS   NREIIVRDR+RFHHFK G+CSC+DYW
Sbjct: 540 PGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 593


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/618 (35%), Positives = 346/618 (55%), Gaps = 41/618 (6%)

Query: 3   NKQPHSPAYEAILK--AGPRLKPL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYA 59
           + +P+S  Y  ++   + P + P  +++HA ++  G+     + T L+++    G    A
Sbjct: 202 DMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEA 261

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           + +F  +   D   +N +I    +     ++L  Y+++ +     +  TF +++ +C+ +
Sbjct: 262 REVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSV 321

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             L  GR VH H+   G DS++ V  ALVN YAK  +++ ARKVF+ M ++  VAW+++I
Sbjct: 322 KALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLI 381

Query: 180 SGYEQNGFAKEA-------------------------------IGLFNLMRDF----GVN 204
             Y  NG+ K+A                               +    + R+     G+ 
Sbjct: 382 GAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLK 441

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD+ T + VL ACA LG +   + +H  I    L+ NVV+  +LINMYARCG++ +A  +
Sbjct: 442 PDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERL 501

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F    E  V++WTAM++ +  +G   EA++LF  M   GV+P++VT+ ++L  C H G +
Sbjct: 502 FAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSL 561

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           ++G R F  M + +GL P  +H   MVDL GR+G L +A + ++ +  E P P  W   L
Sbjct: 562 EQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFE-PDPVAWMTFL 620

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            AC++H   +LG   AE +  ++P +   Y+ +SNIYA  G  ++V  VR  M ++GLKK
Sbjct: 621 TACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKK 680

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S +EVD K + FS G K HP T+EI + L  L G  R AGYVP++++ +H++ E E
Sbjct: 681 LPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGE 740

Query: 505 REYSLRYHSEKLALAFGLMRT-SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
           +E  L YHSEK+A+AFGL+ +   G  IR+VKNLR+C DCH+A KFI+    R+II+RD 
Sbjct: 741 KETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDC 800

Query: 564 LRFHHFKR-GSCSCLDYW 580
            RFH F   G CSC DYW
Sbjct: 801 NRFHRFSSDGKCSCGDYW 818



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 225/444 (50%), Gaps = 41/444 (9%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           + ++L A   L   +++H  +  +G    +S+   L+++    G +  A+R+F  + + D
Sbjct: 113 FVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRD 172

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
              +N +I+ +S++   + +L  ++ M   ++ P++ T+  VI   +   +L  GR +H 
Sbjct: 173 ETSWNAVILAHSQSGDWSGALRIFKEMKC-DMKPNSTTYINVISGFSTPEVLPEGRKIHA 231

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
            +  +G+DSDL V  AL+N Y K  +   AR+VFD+M  + +V+WN MI  Y QNG   E
Sbjct: 232 EIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHE 291

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ L+  +   G      T V +L AC+ +  +  GR VH  I+ +GLD  V +AT+L+N
Sbjct: 292 ALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVN 351

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE------------------- 291
           MYA+CG++ +AR++F+ M   + +AW+ +I  Y  +GYG +                   
Sbjct: 352 MYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICW 411

Query: 292 ---------------AVELFHRMR-AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
                          A+++F  M  A G++P+ VTF+AVL ACA  G + E   + A + 
Sbjct: 412 NAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQI- 470

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
            E  L   V     +++++ R G L EA +       ++     WTAM+ A   +  +  
Sbjct: 471 SESELESNVVVTNTLINMYARCGSLEEAERLF--AAAKEKTVVSWTAMVAAFSQYGRYAE 528

Query: 396 GVEVAEH--LLSVEPENPGHYVML 417
            +++ +   L  V+P++  +  +L
Sbjct: 529 ALDLFQEMDLEGVKPDDVTYTSIL 552



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 177/313 (56%), Gaps = 7/313 (2%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N +I   ++   ST++L+ Y RM +  +   + TF +V+ +C+ L+    GR +H  VF
Sbjct: 78  WNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVF 134

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            SG DS   +  ALV  YA+  +V  A+++F  +  +   +WN++I  + Q+G    A+ 
Sbjct: 135 YSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALR 194

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           +F  M+   + P+STT + V++  +    +  GR +H  IV  G D ++V+AT+LINMY 
Sbjct: 195 IFKEMK-CDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYG 253

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +CG+  +ARE+FD M + ++++W  MI  Y  +G   EA+EL+ ++   G +    TFV+
Sbjct: 254 KCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVS 313

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           +L AC+    + +G R+  S   E GL   V     +V+++ + G L EA K V + +  
Sbjct: 314 ILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARK-VFNAMKN 371

Query: 374 KPAPAVWTAMLGA 386
           + A A W+ ++GA
Sbjct: 372 RDAVA-WSTLIGA 383



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 184/359 (51%), Gaps = 20/359 (5%)

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P N TF  V+ SC+    +  GRA+H  +  S ++ D  V  AL++ Y K +++  AR V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 164 FDRMP--DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           F+ M    ++VV+WN+MI+ Y QNG + EA+ L+  M   G+  D  T V VL AC+ L 
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA 124

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
               GR +H  +   GLD    LA +L+ MYAR G+V  A+ +F  +   +  +W A+I 
Sbjct: 125 Q---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVIL 181

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
            +   G  + A+ +F  M+   ++PN+ T++ V+S  +   ++ EG ++ A +    G  
Sbjct: 182 AHSQSGDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVAN-GFD 239

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
             +     +++++G+ G  +EA +    +  +K     W  M+G    + +F   +E+ +
Sbjct: 240 SDLVVATALINMYGKCGSSHEAREVFDKM--KKRDMVSWNVMIGCYVQNGDFHEALELYQ 297

Query: 402 HL-LSVEPENPGHYVML----SNIYALA-GRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
            L +         +V +    S++ ALA GR+     V + ++++GL   V  +T  V+
Sbjct: 298 KLDMEGFKRTKATFVSILGACSSVKALAQGRL-----VHSHILERGLDSEVAVATALVN 351


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/606 (34%), Positives = 352/606 (58%), Gaps = 26/606 (4%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFI 56
           ++  +P    + ++L A   L  L   +++HA+ +        S + + L+ + C+ G +
Sbjct: 209 LEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQV 268

Query: 57  TYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM-IVSNISPSNYTFSAVIKS 115
              + +F  +      L+N +I   +++     +L+ +  M   + +  +  T S+++ +
Sbjct: 269 ESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPA 328

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
                 ++    +H +V   G +++ ++Q AL++ Y++  ++  ++++FD M D+ +V+W
Sbjct: 329 YVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSW 388

Query: 176 NSMISGYEQNGFAKEAI----------------GLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           N++I+ Y   G + +A+                G +N  +     P+S T + VL  CA 
Sbjct: 389 NTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCAS 448

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           L  +  G+ +H + +   L   V + ++L++MYA+CG ++ AR +FD M   NVI W  +
Sbjct: 449 LSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVI 508

Query: 280 ISGYGMHGYGTEAVELFHRMRAHG-----VRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
           I  YGMHG G E++ELF  M A G     V+P  VTF+A+ ++C+H+G+V EG  +F  M
Sbjct: 509 IMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKM 568

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
           + E+G+ P  +H+ C+VDL GRAG + EAY  V  +         W+++LGAC+++ N +
Sbjct: 569 KNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIE 628

Query: 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           +G   AE+LL ++P+   HYV+LSNIY+ AG  D+   +R  M   G+KK  G S +E  
Sbjct: 629 IGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYG 688

Query: 455 QKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSE 514
            + + F  GD SHP + +++ +L+ L  R ++ GYVP++   +H+++EEE+E  L  HSE
Sbjct: 689 DEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSE 748

Query: 515 KLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSC 574
           KLA+AFG++ T PG TIR+ KNLR+C DCH+A KFIS   +REII+RD  RFHHFK G+C
Sbjct: 749 KLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTC 808

Query: 575 SCLDYW 580
           SC DYW
Sbjct: 809 SCGDYW 814



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 208/449 (46%), Gaps = 51/449 (11%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS--DLHVQAALVNFYAKS 154
           MI S  SP N+ F AV+K+ A +  L LG+ +H HVF  GY S   + +   LVN Y K 
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
             +  A KVFDR+ ++  V+WNS+IS   +    + AI  F LM   G  P S T V + 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 215 AACAQLGDID---LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
            AC+ L   D   LG+ +H     +G         +L+ MYA+ G +  A+ +  +  + 
Sbjct: 121 LACSNLRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDR 179

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           +++ W +MIS +  +    EA+     M   GV+P+ VTF +VL AC+H  L++ G  + 
Sbjct: 180 DLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIH 239

Query: 332 ASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHK 391
           A   +   ++        +VD++   G + E+ + V D + ++    +W AM+       
Sbjct: 240 AYALRTDDVIENSFVGSALVDMYCNCGQV-ESGRLVFDSVLDRKI-GLWNAMIA------ 291

Query: 392 NFDLGVEVAEH-----LLSVEPE-NPGHY---VMLSNI---YALAGRMDRVEVVRNIMIQ 439
               G   +EH     +L +E E   G Y     +S+I   Y     + R E +   +I+
Sbjct: 292 ----GYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIK 347

Query: 440 KGLKKHVGYSTVEVD----------QKNYLFSMGDKSHPNTNEIY-QYLDELMGRCREAG 488
           +GL+ +       +D           K    SM D+   + N I   Y+  + GR  +A 
Sbjct: 348 RGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYV--ICGRSSDAL 405

Query: 489 YVPESESAMHELE--EEEREYSLRYHSEK 515
            +      +HE++  EE+  Y   Y+ EK
Sbjct: 406 LL------LHEMQRIEEKSTYDGDYNDEK 428



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 163/323 (50%), Gaps = 13/323 (4%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGR--SRSMLTKLLSLVCDAGFITYAQ 60
           P + A+ A+LKA   ++ L   +Q+HAH+   GYG   S ++   L+++    G +  A 
Sbjct: 8   PDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAY 67

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           ++F  I   D   +N++I    +      ++  +R M++    PS++T  ++  +C++L 
Sbjct: 68  KVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLR 127

Query: 121 I---LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
               L LG+ +H   F  G+        AL+  YAK   +D A+ +     D+ +V WNS
Sbjct: 128 KRDGLWLGKQIHGCCFRKGHWRTFS-NNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNS 186

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           MIS + QN    EA+    LM   GV PD  T   VL AC+ L  +  G+ +H + + + 
Sbjct: 187 MISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYAL-RT 245

Query: 238 LDV--NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
            DV  N  + ++L++MY  CG V   R +FD + +  +  W AMI+GY    +  +A+ L
Sbjct: 246 DDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALML 305

Query: 296 FHRMR-AHGVRPNNVTFVAVLSA 317
           F  M  A G+  N  T  +++ A
Sbjct: 306 FIEMEAAAGLYSNATTMSSIVPA 328


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/587 (34%), Positives = 337/587 (57%), Gaps = 33/587 (5%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI------ 78
           +Q+H  +I  G+     + + LL +  + G I+ A+++F+ +   ++ ++N+L+      
Sbjct: 159 KQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLAC 218

Query: 79  -----------------------IRNSKAN-FSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
                                  I+    N  + +++  +R M V  +    Y F +V+ 
Sbjct: 219 GMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLP 278

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           +C  L  +N G+ +H  +  + +   ++V +AL++ Y K   +  A+ VFDRM  K+VV+
Sbjct: 279 ACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS 338

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           W +M+ GY Q G A+EA+ +F  M+  G++PD  T    ++ACA +  ++ G   H   +
Sbjct: 339 WTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAI 398

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             GL   V ++ SL+ +Y +CG++  +  +F+ M+  + ++WTAM+S Y   G   E ++
Sbjct: 399 TSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQ 458

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
           LF +M  HG++P+ VT   V+SAC+ AGLV++G R F  M  EYG++P + H+ CM+DLF
Sbjct: 459 LFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLF 518

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAV-WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            R+G L EA +F+  +    P  A+ WT +L AC+   N ++G   AE L+ ++P +P  
Sbjct: 519 SRSGRLEEAMRFINGM--PFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAG 576

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           Y +LS+IYA  G+ D V  +R  M +K +KK  G S ++   K + FS  D+S P  ++I
Sbjct: 577 YTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQI 636

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           Y  L+EL  +  + GY P++    H++EE  +   L YHSE+LA+AFGL+    G  IR+
Sbjct: 637 YAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRV 696

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+CVDCH+A K IS  T REI+VRD +RFH FK G+CSC D+W
Sbjct: 697 GKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/412 (28%), Positives = 189/412 (45%), Gaps = 78/412 (18%)

Query: 57  TYAQRIFFCIPSPDSFLFNTLIIRNSKANF-----STDSLLFYRRMIVSNISPSNYT--- 108
           TYA+R+F  IP P+ F +N L++  SKA       ST   L  R  +  N+    Y+   
Sbjct: 58  TYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSG 117

Query: 109 ---------------FSAVIKSCAHLSIL---------NLGRAVHCHVFVSGYDSDLHVQ 144
                          FSA +     +++L         +LG+ +H  V   G++S L V 
Sbjct: 118 LVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVG 177

Query: 145 AALVNFYAKSNNVDVARKVFDRMPD------------------------------KSVVA 174
           + L+  YA    +  A+KVF  + D                              K  V+
Sbjct: 178 SPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVS 237

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           W +MI G  QNG AKEAI  F  M+  G+  D      VL AC  LG I+ G+ +H  I+
Sbjct: 238 WAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACII 297

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
                 ++ + ++LI+MY +C  +  A+ +FD M + NV++WTAM+ GYG  G   EAV+
Sbjct: 298 RTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVK 357

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
           +F  M+  G+ P++ T    +SACA+   ++EG + F       GL+  V     +V L+
Sbjct: 358 IFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQ-FHGKAITSGLIHYVTVSNSLVTLY 416

Query: 355 GRAGLLNEAYKF-----VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           G+ G ++++ +      V+D +        WTAM+ A   +  F   VE  +
Sbjct: 417 GKCGDIDDSTRLFNEMNVRDAVS-------WTAMVSA---YAQFGRAVETIQ 458



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 163/373 (43%), Gaps = 56/373 (15%)

Query: 94  YRRMIVSNI-----SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
           Y +MI  NI      P  + ++ ++ + A +      R     VF      +L     L+
Sbjct: 24  YVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYAR----RVFDRIPQPNLFSWNNLL 79

Query: 149 NFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN-LMRDFGVNPDS 207
             Y+K+  +      F+++PD+  V WN +I GY  +G    A+  +N +MRDF  N   
Sbjct: 80  LAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTR 139

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
            T + +L   +  G + LG+ +H  ++  G +  +++ + L+ MYA  G +S A+++F  
Sbjct: 140 VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYG 199

Query: 268 MSELNV------------------------------IAWTAMISGYGMHGYGTEAVELFH 297
           + + N                               ++W AMI G   +G   EA+E F 
Sbjct: 200 LDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFR 259

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDL 353
            M+  G++ +   F +VL AC   G + EG ++ A +     +    + H+     ++D+
Sbjct: 260 EMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACI-----IRTNFQDHIYVGSALIDM 314

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE--NP 411
           + +   L+ A K V D + +K   + WTAM+         +  V++    L ++    +P
Sbjct: 315 YCKCKCLHYA-KTVFDRMKQKNVVS-WTAMVVGYGQTGRAEEAVKI---FLDMQRSGIDP 369

Query: 412 GHYVMLSNIYALA 424
            HY +   I A A
Sbjct: 370 DHYTLGQAISACA 382


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/578 (38%), Positives = 347/578 (60%), Gaps = 13/578 (2%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPS 68
           +  +L+       ++Q+ A+LI+ G     S  TKLL L   + F  ++YA  IF  IP 
Sbjct: 4   FNLLLQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIPY 63

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI--SPSNYTFSAVIKSCAHLSILNLGR 126
           P +  +N +I   + ++   +++ +YR M  SN        T S  +K+CA     +   
Sbjct: 64  PSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAI 123

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H  +   G+++D+ +Q  L++ YAK  ++D+A+K+FD MP   + +WN++I+G+ Q  
Sbjct: 124 QLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGS 183

Query: 187 FAKEAIGLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
              +AI  F  M+ D  + P++ T    L AC+QLG +  G  VH++IV + L+ NV + 
Sbjct: 184 RPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVC 243

Query: 246 TSLINMYARCGNVSKAREIFD-MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             +I+MYA+CG++ KA  +F+ M  + ++I W  MI  + MHG G +A++LF ++   G+
Sbjct: 244 NVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGM 303

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
            P+ V+++AVL AC HAGLV++G ++F SM Q  GL P ++H+  MVDL GRAG L EAY
Sbjct: 304 SPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSMVDLLGRAGRLKEAY 362

Query: 365 KFVKDVIGEKPAP--AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
               D++   P P   +W  +LGAC+ + + ++    +  L+ +   + G +V+LSN+YA
Sbjct: 363 ----DIVSSLPFPNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGDFVLLSNVYA 418

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
              R D V  VR+ M ++ +KK  G+S +E+  K Y F  GD+SH +  EIY  LDE+  
Sbjct: 419 ARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINL 478

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           R +  GY  ++ + +H++ +E++E +L YHSEKLA+AFGL  T  G  I+++KNLR+C D
Sbjct: 479 RIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGD 538

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH  IK IS    REIIVRDR RFH FK G CSC DYW
Sbjct: 539 CHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/527 (39%), Positives = 324/527 (61%), Gaps = 1/527 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+ +F  +P  +   +N ++   +K   + ++LL + RM   +  P  Y+  +V+
Sbjct: 149 GNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVL 208

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           + CAHL  L  G+ VH +V   G++ +L V  +L + Y K+ ++    +V + MPD S+V
Sbjct: 209 RGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLV 268

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           AWN+++SG  Q G+ +  +  + +M+  G  PD  T V V+++C++L  +  G+ +H   
Sbjct: 269 AWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEA 328

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           V  G    V + +SL++MY+RCG +  + + F    E +V+ W++MI+ YG HG G EA+
Sbjct: 329 VKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAI 388

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           +LF+ M    +  N +TF+++L AC+H GL  +G  +F  M ++YGL   ++H+ C+VDL
Sbjct: 389 KLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDL 448

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GR+G L EA   ++  +  K    +W  +L ACK+HKN ++   VA+ +L ++P++   
Sbjct: 449 LGRSGCLEEAEAMIRS-MPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSAS 507

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+L+NIY+ A R   V  VR  M  K +KK  G S VEV  + + F MGD+ HP   EI
Sbjct: 508 YVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEI 567

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
            QYL+EL    +  GYVP++ S +H+++ EE+E  LR+HSEKLA+AF LM T  G+ IR+
Sbjct: 568 NQYLEELTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRV 627

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +KNLR+C DCH AIK+IS     EIIVRD  RFHHFK G+CSC DYW
Sbjct: 628 MKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 195/392 (49%), Gaps = 42/392 (10%)

Query: 99  VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK----- 153
           +S I      FS ++++C  L  ++LG+ +H  +F SG  SD  +   L+N Y+K     
Sbjct: 62  LSEIWAEPRLFSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQ 121

Query: 154 --------------------------SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
                                       N++ A+ +FD MPD++V  WN+M++G  +   
Sbjct: 122 AAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEM 181

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            +EA+ LF+ M +    PD  +   VL  CA LG +  G+ VH +++  G + N+V+  S
Sbjct: 182 NEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCS 241

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           L +MY + G++     + + M + +++AW  ++SG    GY    ++ +  M+  G RP+
Sbjct: 242 LAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPD 301

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
            +TFV+V+S+C+   ++ +G ++ A   +  G    V     +V ++ R G L ++ K  
Sbjct: 302 KITFVSVISSCSELAILCQGKQIHAEAVKA-GASSEVSVVSSLVSMYSRCGCLQDSIKTF 360

Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN-PGHYV-MLSNIYALA- 424
            +   ++    +W++M+ A   H     G E  +    +E EN PG+ +  LS +YA + 
Sbjct: 361 LEC--KERDVVLWSSMIAAYGFHGQ---GEEAIKLFNEMEQENLPGNEITFLSLLYACSH 415

Query: 425 -GRMDRVEVVRNIMIQK-GLKKHVGYSTVEVD 454
            G  D+   + ++M++K GLK  + + T  VD
Sbjct: 416 CGLKDKGLGLFDMMVKKYGLKARLQHYTCLVD 447



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 140/286 (48%), Gaps = 5/286 (1%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P   +  ++L+    L  L   QQVHA+++  G+  +  +   L  +   AG +   +R+
Sbjct: 199 PDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERV 258

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
              +P      +NTL+   ++  +    L  Y  M ++   P   TF +VI SC+ L+IL
Sbjct: 259 INWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAIL 318

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+ +H     +G  S++ V ++LV+ Y++   +  + K F    ++ VV W+SMI+ Y
Sbjct: 319 CQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAY 378

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVN 241
             +G  +EAI LFN M    +  +  T + +L AC+  G  D G  + + +V + GL   
Sbjct: 379 GFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKAR 438

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
           +   T L+++  R G + +A  +   M  + + I W  ++S   +H
Sbjct: 439 LQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIH 484


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/562 (36%), Positives = 332/562 (59%), Gaps = 13/562 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q H + + +G    + +   L+ L      +  A +I + +P  D F +N ++    + 
Sbjct: 143 KQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQH 202

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +++   + +I   I  +N T+  + + CA L  + LG+ VH  +  S  D D+++ 
Sbjct: 203 THMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIG 262

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           +++++ Y K  NV   R  FDR+  ++VV+W S+I+ Y QN F +EA+ LF+ M    + 
Sbjct: 263 SSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIP 322

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T   +  + A L  + LG  +H      GL  NV++  +LI MY + G++  A+ +
Sbjct: 323 PNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSV 382

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  M+  N+I W A+I+G+  HG G EA+ +F  M A G RPN VTF+ V+ ACAH  LV
Sbjct: 383 FSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLV 442

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK------DVIGEKPAPA 378
            EG   F  + +++ ++PG+EH+ C+V L  R+G L+EA  F++      DV+       
Sbjct: 443 DEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVS------ 496

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
            W  +L AC +HK++D G ++AE+LL +EP + G Y++LSN++A   R D V  +R +M 
Sbjct: 497 -WRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRKLMR 555

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
           ++ +KK  G S +E+    ++F+  D  HP  N IY+ + +L+ + R  GYVP+ ++ +H
Sbjct: 556 ERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDLLSKIRPLGYVPDIDNVLH 615

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
           ++E+E++  +L YHSEKLA+A+GLM+T  G  I ++KNLRMC DCH+AIK IS   NR I
Sbjct: 616 DIEDEQKVDNLSYHSEKLAVAYGLMKTPSGAPITVIKNLRMCDDCHTAIKLISKVANRVI 675

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           +VRD  RFHHF+ G CSC DYW
Sbjct: 676 VVRDANRFHHFQNGCCSCGDYW 697



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/479 (24%), Positives = 214/479 (44%), Gaps = 67/479 (13%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLV-----CDAGFIT 57
           PH    + +LK     K L+    +HAHL +  +    S + +L SL+     CD   ++
Sbjct: 18  PHQDPIK-LLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDE--VS 74

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSC 116
            A+++F  +P  +   ++ L+    +     +    +++M+V  NI P+ Y  +  I SC
Sbjct: 75  IARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSC 134

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
                +  G+  H +   SG +   +V+ AL+  Y+K ++V  A ++   +P   +  +N
Sbjct: 135 DSQMYVE-GKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYN 193

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
            +++G  Q+    EA+ +  L+   G+  ++ T V +   CA L DI LG+ VH  ++  
Sbjct: 194 LVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKS 253

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
            +D +V + +S+I+MY +CGNV   R  FD +   NV++WT++I+ Y  + +  EA+ LF
Sbjct: 254 DIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLF 313

Query: 297 HRMRAHGVRPNNVTFVAVLSACA-----------HA------------------------ 321
            +M    + PN  T   + ++ A           HA                        
Sbjct: 314 SKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKS 373

Query: 322 GLVQEGHRVFASMR-----QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI--GEK 374
           G +     VF++M          ++ G  HH          GL  EA    +D++  GE+
Sbjct: 374 GDILAAQSVFSNMTCCNIITWNAIITGHSHH----------GLGKEALSMFQDMMATGER 423

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG--HYVMLSNIYALAGRMDRVE 431
           P    +  ++ AC   K  D G     HL+      PG  HY  +  + + +GR+D  E
Sbjct: 424 PNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAE 482


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/559 (38%), Positives = 334/559 (59%), Gaps = 8/559 (1%)

Query: 26   QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
            QVH + I  G      + T L+ L    G +  A+ +       D   +N ++    K+N
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSN 1078

Query: 86   FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
             S  +L  +  M    I     T +  IK+   L  L  G+ +  +    G+++DL V +
Sbjct: 1079 KSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSS 1138

Query: 146  ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
             +++ Y K  ++  A ++F  +     VAW +MISGY +NG    A+ +++LMR  GV P
Sbjct: 1139 GVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQP 1198

Query: 206  DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
            D  T   ++ A + L  ++ G+ +H  +V     ++  + TSL++MY +CG+V  A  +F
Sbjct: 1199 DEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVF 1258

Query: 266  DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
              M    V+ W AM+ G   HG+  EA+ LF  M+++G++P+ VTF+ VLSAC+H+GL  
Sbjct: 1259 RKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFS 1318

Query: 326  EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP---APAVWTA 382
            E ++ F +M + YG+ P +EH+ C+VD  GRAG + EA    ++VI   P   + +++ A
Sbjct: 1319 EAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEA----ENVIASMPFKASASMYRA 1374

Query: 383  MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
            +LGAC+   + +    VA+ LL+++P +   YV+LSNIYA + + D V   RN+M  K +
Sbjct: 1375 LLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNV 1434

Query: 443  KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG-YVPESESAMHELE 501
            KK  G+S ++V  K +LF + D+SHP  + IY+ +++LM R RE G YVP+++  + ++E
Sbjct: 1435 KKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVE 1494

Query: 502  EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
            EEE+E +L YHSEKLA+AFGL+ T P  TIR++KNLR+C DCHSAIK IS  T REI++R
Sbjct: 1495 EEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLR 1554

Query: 562  DRLRFHHFKRGSCSCLDYW 580
            D  RFHHF+ G+CSC DYW
Sbjct: 1555 DANRFHHFRNGTCSCGDYW 1573



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 205/393 (52%), Gaps = 14/393 (3%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            +Q+HA +I + +     +   L+++   AG +  A++ F   P  D   +NT+I   ++ 
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN 973

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA---HLSILNLGRAVHCHVFVSGYDSDL 141
            N   +++  +R ++   + P  +T ++V+++C+         LG  VH +    G  +D 
Sbjct: 974  NLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDS 1033

Query: 142  HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
             V  AL++ Y+K   +D A  +     D  + +WN+++ GY ++  +++A+  F+LM + 
Sbjct: 1034 FVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEM 1093

Query: 202  GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
            G+  D  T    + A   L ++  G+ +  + +  G + ++ +++ +++MY +CG++  A
Sbjct: 1094 GIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNA 1153

Query: 262  REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
             E+F  +S  + +AWT MISGY  +G    A+ ++H MR  GV+P+  TF  ++ A +  
Sbjct: 1154 LELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCL 1213

Query: 322  GLVQEGHRVFAS-MRQEYGLLPGVEHHV--CMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
              +++G ++ A+ ++ +Y L    +H V   +VD++ + G + +AY+  + +   K    
Sbjct: 1214 TALEQGKQIHANVVKLDYSL----DHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK--VV 1267

Query: 379  VWTAMLGACKMHKNFDLGVEVAEHLLS--VEPE 409
             W AML     H + D  + +   + S  ++P+
Sbjct: 1268 FWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPD 1300



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 1/249 (0%)

Query: 21   LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
            LK  +Q+ A+ I  G+     + + +L +    G +  A  +F  I  PD   + T+I  
Sbjct: 1115 LKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISG 1174

Query: 81   NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
              +      +L  Y  M VS + P  YTF+ +IK+ + L+ L  G+ +H +V    Y  D
Sbjct: 1175 YIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLD 1234

Query: 141  LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
              V  +LV+ Y K  +V  A +VF +M  + VV WN+M+ G  Q+G   EA+ LF  M+ 
Sbjct: 1235 HFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQS 1294

Query: 201  FGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+ PD  T + VL+AC+  G      ++        G+   +   + L++   R G + 
Sbjct: 1295 NGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQ 1354

Query: 260  KAREIFDMM 268
            +A  +   M
Sbjct: 1355 EAENVIASM 1363



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 152/348 (43%), Gaps = 41/348 (11%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            + VH + +  G+     +   L+++ C  G +  A+ +F  +P  D+ L+N ++    + 
Sbjct: 737  ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN 796

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL--- 141
            +F  ++L F               FSA  +S       NL      H  + G +SD+   
Sbjct: 797  SFQDEALRF---------------FSAFHRSGFFPDFSNL------HCVIGGVNSDVSNN 835

Query: 142  -HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
                A  V  YA         K+F      ++ AWN  ++ +   G    AI  F  +  
Sbjct: 836  RKRHAEQVKAYA--------MKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLR 887

Query: 201  FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
              +  DS T V +L+A     D+DLG  +H  ++       V ++ SL+NMY++ G V  
Sbjct: 888  STIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYA 947

Query: 261  AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
            A + F    EL++I+W  MIS Y  +    EA+  F  +   G++P+  T  +VL AC+ 
Sbjct: 948  AEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACST 1007

Query: 321  AGLVQEG-HRVFASMRQEYGLLPGVEHH----VCMVDLFGRAGLLNEA 363
                 EG +    S    Y +  G+ +       ++DL+ + G ++EA
Sbjct: 1008 G---DEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 9/201 (4%)

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           +S   ++ L LG+  H  +  SG   D ++   L+  Y+K  ++  AR+VFD+  D+ +V
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 174 AWNSMISGYEQNGFAK-------EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
            WNS+++ Y Q  FA        E   LF L+R+FG +    T   +L  C   G + + 
Sbjct: 679 TWNSILAAYAQ--FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS 736

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
             VH + V  G ++++ ++ +L+N+Y + G V +AR +FD M E + + W  M+  Y  +
Sbjct: 737 ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN 796

Query: 287 GYGTEAVELFHRMRAHGVRPN 307
            +  EA+  F      G  P+
Sbjct: 797 SFQDEALRFFSAFHRSGFFPD 817



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 152/350 (43%), Gaps = 31/350 (8%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  ++ HA ++ +G    R +   L+++    G +  A+++F      D   +N+++  
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 81  NSK-ANFSTDSLLFYRRMI----VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
            ++ A+ S +++L   R+         S +  T + ++K C     + +   VH +    
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G++ DL V  ALVN Y K   V  AR +FD+MP++  V WN M+  Y +N F  EA+  F
Sbjct: 747 GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
           +     G  PD +   CV+       D+   R  H                  +  Y   
Sbjct: 807 SAFHRSGFFPDFSNLHCVIGGVNS--DVSNNRKRH---------------AEQVKAY--- 846

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
                A ++F      N+ AW   ++ +   G    A++ F  +    +  ++VT V +L
Sbjct: 847 -----AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIIL 901

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           SA   A  +  G ++ A + +     P V     +++++ +AG++  A K
Sbjct: 902 SAAVGADDLDLGEQIHALVIKS-SFAPVVPVSNSLMNMYSKAGVVYAAEK 950


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/564 (37%), Positives = 334/564 (59%), Gaps = 8/564 (1%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS-PDSFLFNTLIIRNS 82
           + Q+H+  + +G+    S+   LL+     G +  A+R+F+ +    D   +N++I+   
Sbjct: 157 IGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYG 216

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
           +    + +L  ++ M+   ++   +T ++V+ +   L  L+ G   H  +  +G+  + H
Sbjct: 217 QHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSH 276

Query: 143 VQAALVNFYAK-SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG-FAKEAIGLFNLMRD 200
           V + L++ Y+K    +   RKVF+ + +  +V WN+M+SGY QN  F ++A+  F  M+ 
Sbjct: 277 VGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQG 336

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN-VVLATSLINMYARCGNVS 259
            G  P+  + VCV++AC+ L     G+ +H   +   +  N + +  +LI MY++CGN+ 
Sbjct: 337 IGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQ 396

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            AR +FD M+E N ++  +MI+GY  HG   E++ LF  M    + P ++TF++VLSACA
Sbjct: 397 DARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACA 456

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H G V+EG   F  M++++ + P  EH+ CM+DL GRAG L+EA   +   +   P    
Sbjct: 457 HTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIAR-MPFNPGSIG 515

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W ++LGAC+ H N +L V+ A  +L +EP N   YV+LSN+YA AGR + V  VR  M  
Sbjct: 516 WASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRD 575

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           +G+KK  G S +EV ++ ++F   D SHP   EIY++L+E+ G+ + AGYVP+   A+ +
Sbjct: 576 RGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVK 635

Query: 500 LEEE---EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNR 556
            +     E+E  L +HSEKLA+AFGL+ T  G  + +VKNLR+C DCH+AIKFIS    R
Sbjct: 636 DDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGR 695

Query: 557 EIIVRDRLRFHHFKRGSCSCLDYW 580
           EI VRD  RFH FK G CSC DYW
Sbjct: 696 EITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/275 (32%), Positives = 149/275 (54%), Gaps = 5/275 (1%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A ++F  IP PD   +NTLI   +    +  +L  +  M    +    +T SAVI +C  
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACC- 151

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-KSVVAWNS 177
              + L   +H     SG+DS + V  AL+ +Y K+ ++D A++VF  M   +  V+WNS
Sbjct: 152 -DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNS 210

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           MI  Y Q+    +A+GLF  M   G+N D  T   VL A   L D+  G   H  ++  G
Sbjct: 211 MIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTG 270

Query: 238 LDVNVVLATSLINMYARC-GNVSKAREIFDMMSELNVIAWTAMISGYGMH-GYGTEAVEL 295
              N  + + LI++Y++C G +S  R++F+ ++E +++ W  M+SGY  +  +  +A+E 
Sbjct: 271 FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALEC 330

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
           F +M+  G RPN+ +FV V+SAC++     +G ++
Sbjct: 331 FRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQI 365



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 142/306 (46%), Gaps = 27/306 (8%)

Query: 98  IVSNISPSNYT---FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154
           I S I PS Y    F  +   C  L+            F    D ++    A++  YAK 
Sbjct: 35  IKSFIPPSTYFSNHFILLYSKCGRLAWAR-------KAFQDISDPNVFSFNAIIAAYAKE 87

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
           +   +A ++FD++P+  +V++N++IS Y   G    A+GLF+ MR+ G++ D  T   V+
Sbjct: 88  SRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVI 147

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL-NV 273
            AC    D+ L   +H   V  G D  V +  +L+  Y + G++  A+ +F  M  + + 
Sbjct: 148 TACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDE 205

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA-----HAGLVQEGH 328
           ++W +MI  YG H  G++A+ LF  M   G+  +  T  +VL+A         GL   G 
Sbjct: 206 VSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQ 265

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGR-AGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
            +     Q   +  G      ++DL+ +  G +++  K  +++   +P   +W  M+   
Sbjct: 266 LIKTGFHQNSHVGSG------LIDLYSKCGGGMSDCRKVFEEIT--EPDLVLWNTMVSGY 317

Query: 388 KMHKNF 393
             ++ F
Sbjct: 318 SQNEEF 323


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/438 (44%), Positives = 285/438 (65%), Gaps = 1/438 (0%)

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           V  ALV+ YAK    D A  VF++M DK V++W S+++G   NG  +EA+ LF  MR  G
Sbjct: 4   VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 63

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           ++PD      VL+ACA+L  ++ G+ VH   +  GL  ++ +  SL++MYA+CG +  A 
Sbjct: 64  IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDAN 123

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           ++FD M   +VI WTA+I GY  +G G E++  ++ M A GV+P+ +TF+ +L AC+HAG
Sbjct: 124 KVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAG 183

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           LV+ G   F SM + YG+ PG EH+ CM+DL GR+G L EA + +   +  +P   VW A
Sbjct: 184 LVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQ-MAVQPDATVWKA 242

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +L AC++H N +LG   A +L  +EP+N   YV+LSN+Y+ AG+ +     R +M  +G+
Sbjct: 243 LLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 302

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
            K  G S +E+  K + F   D+SHP T EIY  +DE+M   +EAGYVP+   A+H+++E
Sbjct: 303 SKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDE 362

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           E +E  L YHSEKLA+AFGL+   PG  IRI KNLR+C DCH+A+K++S   +R +I+RD
Sbjct: 363 EGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRD 422

Query: 563 RLRFHHFKRGSCSCLDYW 580
              FHHF+ G+CSC DYW
Sbjct: 423 SNCFHHFREGACSCSDYW 440



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 2/244 (0%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           L+ +    G+  YA  +F  +   D   + +L+          ++L  +  M +  I P 
Sbjct: 8   LVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPD 67

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
               +AV+ +CA L++L  G+ VH +   SG  S L V  +LV+ YAK   ++ A KVFD
Sbjct: 68  QIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFD 127

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            M  + V+ W ++I GY QNG  +E++  +N M   GV PD  T + +L AC+  G ++ 
Sbjct: 128 SMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEH 187

Query: 226 GR-WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGY 283
           GR +        G+         +I++  R G + +A+E+ + M+ + +   W A+++  
Sbjct: 188 GRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAAC 247

Query: 284 GMHG 287
            +HG
Sbjct: 248 RVHG 251



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 110/267 (41%), Gaps = 37/267 (13%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
            P      A+L A   L  L+   QVHA+ + +G G S S+   L+S+    G I  A +
Sbjct: 65  HPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANK 124

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   D   +  LI+  ++     +SL FY  MI S + P   TF  ++ +C+H  +
Sbjct: 125 VFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGL 184

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           +  GR+                       Y +S       +V+   P     A   MI  
Sbjct: 185 VEHGRS-----------------------YFQS-----MEEVYGIKPGPEHYA--CMIDL 214

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             ++G   EA  L N M    V PD+T    +LAAC   G+++LG      +  +    N
Sbjct: 215 LGRSGKLMEAKELLNQM---AVQPDATVWKALLAACRVHGNVELGERAANNLF-ELEPKN 270

Query: 242 VVLATSLINMYARCGNVSKAREIFDMM 268
            V    L N+Y+  G   +A +   +M
Sbjct: 271 AVPYVLLSNLYSAAGKWEEAAKTRRLM 297


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/559 (38%), Positives = 334/559 (59%), Gaps = 8/559 (1%)

Query: 26   QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
            QVH + I  G      + T L+ L    G +  A+ +       D   +N ++    K+N
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSN 1078

Query: 86   FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
             S  +L  +  M    I     T +  IK+   L  L  G+ +  +    G+++DL V +
Sbjct: 1079 KSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSS 1138

Query: 146  ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
             +++ Y K  ++  A ++F  +     VAW +MISGY +NG    A+ +++LMR  GV P
Sbjct: 1139 GVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQP 1198

Query: 206  DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
            D  T   ++ A + L  ++ G+ +H  +V     ++  + TSL++MY +CG+V  A  +F
Sbjct: 1199 DEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVF 1258

Query: 266  DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
              M    V+ W AM+ G   HG+  EA+ LF  M+++G++P+ VTF+ VLSAC+H+GL  
Sbjct: 1259 RKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFS 1318

Query: 326  EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP---APAVWTA 382
            E ++ F +M + YG+ P +EH+ C+VD  GRAG + EA    ++VI   P   + +++ A
Sbjct: 1319 EAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEA----ENVIASMPFKASASMYRA 1374

Query: 383  MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
            +LGAC+   + +    VA+ LL+++P +   YV+LSNIYA + + D V   RN+M  K +
Sbjct: 1375 LLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNV 1434

Query: 443  KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG-YVPESESAMHELE 501
            KK  G+S ++V  K +LF + D+SHP  + IY+ +++LM R RE G YVP+++  + ++E
Sbjct: 1435 KKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVE 1494

Query: 502  EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
            EEE+E +L YHSEKLA+AFGL+ T P  TIR++KNLR+C DCHSAIK IS  T REI++R
Sbjct: 1495 EEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLR 1554

Query: 562  DRLRFHHFKRGSCSCLDYW 580
            D  RFHHF+ G+CSC DYW
Sbjct: 1555 DANRFHHFRNGTCSCGDYW 1573



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 205/393 (52%), Gaps = 14/393 (3%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            +Q+HA +I + +     +   L+++   AG +  A++ F   P  D   +NT+I   ++ 
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN 973

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA---HLSILNLGRAVHCHVFVSGYDSDL 141
            N   +++  +R ++   + P  +T ++V+++C+         LG  VH +    G  +D 
Sbjct: 974  NLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDS 1033

Query: 142  HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
             V  AL++ Y+K   +D A  +     D  + +WN+++ GY ++  +++A+  F+LM + 
Sbjct: 1034 FVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEM 1093

Query: 202  GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
            G+  D  T    + A   L ++  G+ +  + +  G + ++ +++ +++MY +CG++  A
Sbjct: 1094 GIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNA 1153

Query: 262  REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
             E+F  +S  + +AWT MISGY  +G    A+ ++H MR  GV+P+  TF  ++ A +  
Sbjct: 1154 LELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCL 1213

Query: 322  GLVQEGHRVFAS-MRQEYGLLPGVEHHV--CMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
              +++G ++ A+ ++ +Y L    +H V   +VD++ + G + +AY+  + +   K    
Sbjct: 1214 TALEQGKQIHANVVKLDYSL----DHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK--VV 1267

Query: 379  VWTAMLGACKMHKNFDLGVEVAEHLLS--VEPE 409
             W AML     H + D  + +   + S  ++P+
Sbjct: 1268 FWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPD 1300



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 1/249 (0%)

Query: 21   LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
            LK  +Q+ A+ I  G+     + + +L +    G +  A  +F  I  PD   + T+I  
Sbjct: 1115 LKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISG 1174

Query: 81   NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
              +      +L  Y  M VS + P  YTF+ +IK+ + L+ L  G+ +H +V    Y  D
Sbjct: 1175 YIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLD 1234

Query: 141  LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
              V  +LV+ Y K  +V  A +VF +M  + VV WN+M+ G  Q+G   EA+ LF  M+ 
Sbjct: 1235 HFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQS 1294

Query: 201  FGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+ PD  T + VL+AC+  G      ++        G+   +   + L++   R G + 
Sbjct: 1295 NGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQ 1354

Query: 260  KAREIFDMM 268
            +A  +   M
Sbjct: 1355 EAENVIASM 1363



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 151/348 (43%), Gaps = 41/348 (11%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            + VH + +  G+     +   L+++ C  G +  A+ +F  +P  D+ L+N ++    + 
Sbjct: 737  ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN 796

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL--- 141
            +F  ++L F+     S   P    FS                  + H  + G +SD+   
Sbjct: 797  SFQDEALRFFSAFHRSGFXPD---FS------------------NLHCVIGGVNSDVSNN 835

Query: 142  -HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
                A  V  YA         K+F      ++ AWN  ++ +   G    AI  F  +  
Sbjct: 836  RKRHAEQVKAYA--------MKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLR 887

Query: 201  FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
              +  DS T V +L+A     D+DLG  +H  ++       V ++ SL+NMY++ G V  
Sbjct: 888  STIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYA 947

Query: 261  AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
            A + F    EL++I+W  MIS Y  +    EA+  F  +   G++P+  T  +VL AC+ 
Sbjct: 948  AEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACST 1007

Query: 321  AGLVQEG-HRVFASMRQEYGLLPGVEHH----VCMVDLFGRAGLLNEA 363
                 EG +    S    Y +  G+ +       ++DL+ + G ++EA
Sbjct: 1008 G---DEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 9/201 (4%)

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           +S   ++ L LG+  H  +  SG   D ++   L+  Y+K  ++  AR+VFD+  D+ +V
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 174 AWNSMISGYEQNGFAK-------EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
            WNS+++ Y Q  FA        E   LF L+R+FG +    T   +L  C   G + + 
Sbjct: 679 TWNSILAAYAQ--FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS 736

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
             VH + V  G ++++ ++ +L+N+Y + G V +AR +FD M E + + W  M+  Y  +
Sbjct: 737 ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN 796

Query: 287 GYGTEAVELFHRMRAHGVRPN 307
            +  EA+  F      G  P+
Sbjct: 797 SFQDEALRFFSAFHRSGFXPD 817



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 152/350 (43%), Gaps = 31/350 (8%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  ++ HA ++ +G    R +   L+++    G +  A+++F      D   +N+++  
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 81  NSK-ANFSTDSLLFYRRMI----VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
            ++ A+ S +++L   R+         S +  T + ++K C     + +   VH +    
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G++ DL V  ALVN Y K   V  AR +FD+MP++  V WN M+  Y +N F  EA+  F
Sbjct: 747 GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
           +     G  PD +   CV+       D+   R  H                  +  Y   
Sbjct: 807 SAFHRSGFXPDFSNLHCVIGGVNS--DVSNNRKRH---------------AEQVKAY--- 846

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
                A ++F      N+ AW   ++ +   G    A++ F  +    +  ++VT V +L
Sbjct: 847 -----AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIIL 901

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           SA   A  +  G ++ A + +     P V     +++++ +AG++  A K
Sbjct: 902 SAAVGADDLDLGEQIHALVIKS-SFAPVVPVSNSLMNMYSKAGVVYAAEK 950


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/564 (37%), Positives = 334/564 (59%), Gaps = 8/564 (1%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS-PDSFLFNTLIIRNS 82
           + Q+H+  + +G+    S+   LL+     G +  A+R+F+ +    D   +N++I+   
Sbjct: 157 IGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYG 216

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
           +    + +L  ++ M+   ++   +T ++V+ +   L  L+ G   H  +  +G+  + H
Sbjct: 217 QHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSH 276

Query: 143 VQAALVNFYAK-SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG-FAKEAIGLFNLMRD 200
           V + L++ Y+K    +   RKVF+ + +  +V WN+M+SGY QN  F ++A+  F  M+ 
Sbjct: 277 VGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQG 336

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN-VVLATSLINMYARCGNVS 259
            G  P+  + VCV++AC+ L     G+ +H   +   +  N + +  +LI MY++CGN+ 
Sbjct: 337 IGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQ 396

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            AR +FD M+E N ++  +MI+GY  HG   E++ LF  M    + P ++TF++VLSACA
Sbjct: 397 DARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACA 456

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H G V+EG   F  M++++ + P  EH+ CM+DL GRAG L+EA   +   +   P    
Sbjct: 457 HTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIAR-MPFNPGSIG 515

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W ++LGAC+ H N +L V+ A  +L +EP N   YV+LSN+YA AGR + V  VR  M  
Sbjct: 516 WASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRD 575

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           +G+KK  G S +EV ++ ++F   D SHP   EIY++L+E+ G+ + AGYVP+   A+ +
Sbjct: 576 RGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVK 635

Query: 500 LEEE---EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNR 556
            +     E+E  L +HSEKLA+AFGL+ T  G  + +VKNLR+C DCH+AIKFIS    R
Sbjct: 636 DDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGR 695

Query: 557 EIIVRDRLRFHHFKRGSCSCLDYW 580
           EI VRD  RFH FK G CSC DYW
Sbjct: 696 EITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 89/275 (32%), Positives = 149/275 (54%), Gaps = 5/275 (1%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A ++F  IP PD   +NTLI   +    +  +L  +  M    +    +T SAVI +C  
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACC- 151

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-KSVVAWNS 177
              + L   +H     SG+DS + V  AL+ +Y K+ ++D A++VF  M   +  V+WNS
Sbjct: 152 -DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNS 210

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           MI  Y Q+    +A+GLF  M   G+N D  T   VL A   L D+  G   H  ++  G
Sbjct: 211 MIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTG 270

Query: 238 LDVNVVLATSLINMYARC-GNVSKAREIFDMMSELNVIAWTAMISGYGMH-GYGTEAVEL 295
              N  + + LI++Y++C G +S  R++F+ ++E +++ W  M+SGY  +  +  +A+E 
Sbjct: 271 FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALEC 330

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
           F +M+  G RPN+ +FV V+SAC++     +G ++
Sbjct: 331 FRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQI 365



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 142/306 (46%), Gaps = 27/306 (8%)

Query: 98  IVSNISPSNYT---FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154
           I S I PS Y    F  +   C  L+            F    D ++    A++  YAK 
Sbjct: 35  IKSFIPPSTYFSNHFILLYSKCGRLAWAR-------KAFQDISDPNVFSFNAIIAAYAKE 87

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
           +   +A ++FD++P+  +V++N++IS Y   G    A+GLF+ MR+ G++ D  T   V+
Sbjct: 88  SRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVI 147

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL-NV 273
            AC    D+ L   +H   V  G D  V +  +L+  Y + G++  A+ +F  M  + + 
Sbjct: 148 TACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDE 205

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA-----HAGLVQEGH 328
           ++W +MI  YG H  G++A+ LF  M   G+  +  T  +VL+A         GL   G 
Sbjct: 206 VSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQ 265

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGR-AGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
            +     Q   +  G      ++DL+ +  G +++  K  +++   +P   +W  M+   
Sbjct: 266 LIKTGFHQNSHVGSG------LIDLYSKCGGGMSDCRKVFEEIT--EPDLVLWNTMVSGY 317

Query: 388 KMHKNF 393
             ++ F
Sbjct: 318 SQNEEF 323


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/562 (39%), Positives = 332/562 (59%), Gaps = 10/562 (1%)

Query: 25  QQVHAHLIVAGYGR-----SRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           +Q+HAHL   G  R     +RS L +L +L    G +++A   F  I +P +  +N +I 
Sbjct: 21  KQLHAHLFTTGQFRLPISPARSKLLELYAL--SLGNLSFAILTFSQIRTPSTNDWNAIIR 78

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
              ++   T++  +Y+ MI  +      T S V+K+CA +        +H H+   G+ +
Sbjct: 79  GFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIVRKGFIA 138

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D  +   L++ YAK   +D A KVFD M  + + +WN++ISG+ Q     EA+ LF  M 
Sbjct: 139 DALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRME 198

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G  P+  + +  L+ACAQLGD   G  +H +I  +  D+N  +   +I+MYA+CG V 
Sbjct: 199 IDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVD 258

Query: 260 KAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
           KA  +F+ MS   +++ W  MI  + MHG G +A+ELF +M   GV P++V+++AVL AC
Sbjct: 259 KAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCAC 318

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
            H GLV+EG R+F SM +  G+ P V+H+  +VDL GRAG L+EAY  V + +   P   
Sbjct: 319 NHGGLVEEGFRLFNSM-ENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIV-NSMPTVPDIV 376

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
           +W  +LGA + H+N ++   V+  L+ +   + G +V+LSN+YA   R   V  VR  M 
Sbjct: 377 LWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMK 436

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
            + +KK  G S +E +   + F   DKSH +  EIY  LDE+  R +E GYV E+   +H
Sbjct: 437 NRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYVAETSFVLH 496

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
           ++ EE++E  L +HSEKLA+AFGL+ TS G  I+++KNLR+C DCH  IK IS   +REI
Sbjct: 497 DIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLISKIYDREI 556

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           IVRDR+RFH FK G CSC DYW
Sbjct: 557 IVRDRVRFHRFKEGFCSCRDYW 578


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/528 (39%), Positives = 323/528 (61%), Gaps = 2/528 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSN-YTFSAV 112
           G +  A+++F  +P  D+F +N  I      N   ++L  +R M     S SN +T S+ 
Sbjct: 167 GRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSA 226

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           + + A +  L LG+ +H ++  +  + D  V +AL++ Y K  ++D AR +FD+M D+ V
Sbjct: 227 LAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDV 286

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           V+W +MI    ++G  +E   LF  +   GV P+  T   VL ACA      LG+ VH +
Sbjct: 287 VSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGY 346

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           ++  G D      ++L++MY++CGN   AR +F+ M + ++++WT++I GY  +G   EA
Sbjct: 347 MMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEA 406

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           +  F  +   G +P+ VT+V VLSAC HAGLV +G   F S+++++GL+   +H+ C++D
Sbjct: 407 LHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVID 466

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L  R+G   EA   + D +  KP   +W ++LG C++H N +L    A+ L  +EPENP 
Sbjct: 467 LLARSGRFKEAENII-DNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPA 525

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
            Y+ L+NIYA AG    V  VR  M   G+ K  G S +E+ ++ ++F +GD SHP T++
Sbjct: 526 TYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSD 585

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           I+++L EL  + +E GYVP++   +H++EEE++E +L YHSEKLA+ FG++ T PG  I+
Sbjct: 586 IHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPPGTPIK 645

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           + KNLR CVDCH+AIK+IS    R+I VRD  RFH F+ GSCSC DYW
Sbjct: 646 VFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 157/321 (48%), Gaps = 9/321 (2%)

Query: 19  PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           P L+  +++H +LI         + + LL L    G +  A+ IF  +   D   + T+I
Sbjct: 234 PCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMI 293

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
            R  +     +  L +R ++ S + P+ YTF+ V+ +CA  +  +LG+ VH ++  +GYD
Sbjct: 294 HRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYD 353

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
                 +ALV+ Y+K  N  VAR+VF+ M    +V+W S+I GY QNG   EA+  F L+
Sbjct: 354 PGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELL 413

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
              G  PD  T V VL+AC   G +D G  + H      GL         +I++ AR G 
Sbjct: 414 LQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGR 473

Query: 258 VSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRA--HGVRPNN-VTFVA 313
             +A  I D M  + +   W +++ G  +HG     +EL  R     + + P N  T++ 
Sbjct: 474 FKEAENIIDNMPVKPDKFLWASLLGGCRIHG----NLELAKRAAKALYEIEPENPATYIT 529

Query: 314 VLSACAHAGLVQEGHRVFASM 334
           + +  A+AGL  E   V   M
Sbjct: 530 LANIYANAGLWSEVANVRKDM 550



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 183/411 (44%), Gaps = 83/411 (20%)

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCH---------VFVSGYDSDLHVQAA-------- 146
           PS   +S +I +C     L LGR VH H         VF+S    D++ +          
Sbjct: 85  PSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQML 144

Query: 147 --------------LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI 192
                         ++  YAK   ++ ARK+FD MP +   +WN+ ISGY  +   +EA+
Sbjct: 145 FDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREAL 204

Query: 193 GLFNLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
            LF +M R    + +  T    LAA A +  + LG+ +H +++   L+++ V+ ++L+++
Sbjct: 205 ELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDL 264

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           Y +CG++ +AR IFD M + +V++WT MI      G   E   LF  +   GVRPN  TF
Sbjct: 265 YGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTF 324

Query: 312 VAVLSACA----------------HAGL-------------------VQEGHRVFASMRQ 336
             VL+ACA                HAG                     +   RVF  M Q
Sbjct: 325 AGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQ 384

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI--GEKPAPAVWTAMLGACKMHKNFD 394
                P +     ++  + + G  +EA  F + ++  G KP    +  +L AC      D
Sbjct: 385 -----PDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVD 439

Query: 395 LGVEVAEHLLSVEPEN-----PGHYVMLSNIYALAGRMDRVE-VVRNIMIQ 439
            G+   E+  S++ ++       HY  + ++ A +GR    E ++ N+ ++
Sbjct: 440 KGL---EYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVK 487



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 149/396 (37%), Gaps = 87/396 (21%)

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           Q    KEA+ L +        P +     ++AAC +   ++LGR VH           V 
Sbjct: 67  QQKRVKEAVELLHRTDH---RPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVF 123

Query: 244 LATSLINMYARCGN-------------------------------VSKAREIFDMMSELN 272
           ++  L++MYA+CG+                               + +AR++FD M + +
Sbjct: 124 ISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRD 183

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN------------------------ 308
             +W A ISGY  H    EA+ELF  M+ H    +N                        
Sbjct: 184 NFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIH 243

Query: 309 ------------VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
                       V + A+L      G + E   +F  M+    +      H C  D    
Sbjct: 244 GYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFED---- 299

Query: 357 AGLLNEAYKFVKDVI--GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            G   E +   +D++  G +P    +  +L AC  H    LG EV  +++     +PG +
Sbjct: 300 -GRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHA-GYDPGSF 357

Query: 415 VM--LSNIYALAGRMDRVEVVRNIMIQKGLKKH----VGYS-TVEVDQKNYLFSMGDKSH 467
            +  L ++Y+  G       V N M Q  L       VGY+   + D+  + F +  +S 
Sbjct: 358 AISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSG 417

Query: 468 PNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
              +++  Y+  ++  C  AG V +     H ++E+
Sbjct: 418 TKPDQV-TYVG-VLSACTHAGLVDKGLEYFHSIKEK 451


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/595 (37%), Positives = 340/595 (57%), Gaps = 38/595 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           +  ++Q HA+LI         +  K L  V  A  +TYA ++F  IP PD F++NT+I  
Sbjct: 192 INQIKQTHANLITTAQITLPVIANKFLKNVALAS-LTYAHKLFDQIPQPDLFIYNTMIKS 250

Query: 81  NSKANFS-TDSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCH------- 131
           +S +  S  DS+  +R +I  S   P+ Y+F     +C +   +  G  V  H       
Sbjct: 251 HSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKVGLD 310

Query: 132 ------------------------VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
                                   VF S  D D +    ++  Y  S N+ +A+++FD M
Sbjct: 311 GNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEM 370

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
            ++ VV+W+++I+GY Q G   EA+  F+ M    V P+  T V  LAAC+ L  +D G+
Sbjct: 371 HERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGK 430

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF-DMMSELNVIAWTAMISGYGMH 286
           W+H +I    + +N  L  SLI+MYA+CG +  A  +F +   +  V  W AMI G+ MH
Sbjct: 431 WIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMH 490

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
           G   EA+ +F +M+   V PN VTF+A+L+AC+H  +V+EG   F  M  +YG+ P +EH
Sbjct: 491 GKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEH 550

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406
           + CMVDL  R+G L ++ + +   +   P  A+W A+L AC+++K+ + G  +   +  +
Sbjct: 551 YGCMVDLLSRSGHLKDSEEMILS-MPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEI 609

Query: 407 EPENPGHYVMLSNIYALAGRMDRVEVVRNI-MIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           +P + G  V+L NIY+ +GR +   +VR    I    KK  G+S++E++   + F +GD+
Sbjct: 610 DPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFHEFLVGDR 669

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE-REYSLRYHSEKLALAFGLMR 524
           SHP + EIY +LDE++ + + AGYVPE    + + ++EE +E +L  HSEKLA+AFGLM 
Sbjct: 670 SHPQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALSVHSEKLAIAFGLMN 729

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           T+PG  IRIVKNLR+C DCH A KFIS   +R IIVRDR+R+HHFK G CSC DY
Sbjct: 730 TAPGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGICSCKDY 784


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/580 (35%), Positives = 341/580 (58%), Gaps = 6/580 (1%)

Query: 5   QPHSPAYEAILKAGPRLKP----LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           +P      ++LKA   L       +Q+H H I         + T L+        +  A+
Sbjct: 420 KPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAE 479

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
            + F   + D   +N ++   ++++    +L  +  M        ++T + V+K+C  L 
Sbjct: 480 -VLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLF 538

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            +N G+ VH +   SGYD DL V + +++ Y K  ++  A+  FD +P    VAW ++IS
Sbjct: 539 AINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLIS 598

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           G  +NG  + A+ +F+ MR  GV PD  T   +  A + L  ++ GR +H   +      
Sbjct: 599 GCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTS 658

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +  + TSL++MYA+CG++  A  +F  +  +N+ AW AM+ G   HG G EA++LF +M 
Sbjct: 659 DPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQME 718

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
           + G++P+ VTF+ VLSAC+H+GLV E ++   SM ++YG+ P +EH+ C+ D  GRAGL+
Sbjct: 719 SLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLV 778

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
            EA   + D +  + + +++  +L AC++  + + G  VA  LL +EP +   YV+LSN+
Sbjct: 779 KEAENLI-DSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNM 837

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA A + D +++ R +M    +KK  G+S +EV  K +LF + D+S+P T  IY+ + ++
Sbjct: 838 YAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDM 897

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
           +   ++ GYVPE++  + ++EEEE+E +L YHSEKLA+AFGL+ T P   IR++KNLR+C
Sbjct: 898 IRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVC 957

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH+A+K+IS   +REI++RD  RFH FK G CSC DYW
Sbjct: 958 GDCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 205/404 (50%), Gaps = 12/404 (2%)

Query: 14  ILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           +L    RL  L   QQVH   +  G     ++   L+++ C    I  A+ +F  +   D
Sbjct: 328 VLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERD 387

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL-SILNLGRAVH 129
              +N++I   ++++   +++  + +++   + P +YT ++V+K+ + L   L+L + +H
Sbjct: 388 LISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIH 447

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
            H   +   +D  V  AL++ Y+++  +  A  +F R  +  +VAWN+M+SGY Q+    
Sbjct: 448 VHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGH 506

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           + + LF LM   G   D  T   VL  C  L  I+ G+ VH + +  G D+++ +++ ++
Sbjct: 507 KTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGIL 566

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           +MY +CG++S A+  FD +   + +AWT +ISG   +G    A+ +F +MR  GV P+  
Sbjct: 567 DMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEF 626

Query: 310 TFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           T   +  A +    +++G ++ A +++      P V     +VD++ + G +++AY   K
Sbjct: 627 TIATLAKASSCLTALEQGRQIHANALKLNCTSDPFV--GTSLVDMYAKCGSIDDAYCLFK 684

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL--LSVEPEN 410
            +  E      W AML     H      +++ + +  L ++P+ 
Sbjct: 685 RI--EMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDK 726



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 149/296 (50%), Gaps = 7/296 (2%)

Query: 94  YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153
           +  M+ S++     TF  V+ +   L  L LG+ VHC     G D  L V  +L+N Y K
Sbjct: 310 FMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCK 369

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
              + +AR VF+ M ++ +++WNS+I+G  Q+    EA+ LF  +   G+ PD  T   V
Sbjct: 370 LRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSV 429

Query: 214 LAACAQLGD-IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
           L A + L + + L + +H   +      +  ++T+LI+ Y+R   + +A  +F   +  +
Sbjct: 430 LKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFG-RNNFD 488

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           ++AW AM+SGY     G + +ELF  M   G R ++ T   VL  C     + +G +V A
Sbjct: 489 LVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHA 548

Query: 333 -SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
            +++  Y L   V   +  +D++ + G ++ A +F  D I   P    WT ++  C
Sbjct: 549 YAIKSGYDLDLWVSSGI--LDMYVKCGDMSAA-QFAFDSI-PVPDDVAWTTLISGC 600



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 5/197 (2%)

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
           S L LG+  H  +     + +  +   L++ Y+K  ++  AR+VFD+MP++ +V+WNS++
Sbjct: 60  SDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSIL 119

Query: 180 SGYEQNGFA-----KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           + Y Q+        KEA  LF ++R   V     T   +L  C   G +      H +  
Sbjct: 120 AAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYAC 179

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             GLD +  +A +L+N+Y + G V + R +F+ M   +V+ W  M+  Y   G+  EA++
Sbjct: 180 KIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 239

Query: 295 LFHRMRAHGVRPNNVTF 311
           L       G+ PN +T 
Sbjct: 240 LSSAFHTSGLHPNEITL 256



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 128/309 (41%), Gaps = 37/309 (11%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
            HA ++       R ++  L+S+    G +TYA+R+F  +P  D   +N+++   ++++ 
Sbjct: 68  THARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSE 127

Query: 87  ST-----DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
                  ++ L +R +    +  S  T S ++K C H   +    + H +    G D D 
Sbjct: 128 GVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDD 187

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V  ALVN Y K   V   R +F+ MP + VV WN M+  Y + GF +EAI L +     
Sbjct: 188 FVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTS 247

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G++P+                                ++ + L + +    +  G V   
Sbjct: 248 GLHPN--------------------------------EITLRLLSRISGDDSEAGQVKSF 275

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
               D  +   +I+   ++SGY   G  +  ++ F  M    +  + VTF+ VL+     
Sbjct: 276 ENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRL 335

Query: 322 GLVQEGHRV 330
             +  G +V
Sbjct: 336 DSLALGQQV 344



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 13/186 (6%)

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
           +SG DS    +A  V  +   N+     ++  R         N ++SGY   G     + 
Sbjct: 262 ISGDDS----EAGQVKSFENGNDASAVSEIISR---------NKILSGYLHAGQYSALLK 308

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
            F  M +  +  D  T + VLA   +L  + LG+ VH   +  GLD+ + ++ SLINMY 
Sbjct: 309 CFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYC 368

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +   +  AR +F+ MSE ++I+W ++I+G        EAV LF ++   G++P++ T  +
Sbjct: 369 KLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTS 428

Query: 314 VLSACA 319
           VL A +
Sbjct: 429 VLKAAS 434



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 5/120 (4%)

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
           C   L       D+ LG+  H  I+    +    L  +LI+MY++CG+++ AR +FD M 
Sbjct: 49  CFGFLRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMP 108

Query: 270 ELNVIAWTAMISGYGMHGYGT-----EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           E ++++W ++++ Y     G      EA  LF  +R   V  + +T   +L  C H+G V
Sbjct: 109 ERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 168


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/555 (37%), Positives = 326/555 (58%), Gaps = 4/555 (0%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            + +H   + A +         LL +    G +  A  +F  +       + + I    + 
Sbjct: 591  RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVRE 650

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +D++  +  M    + P  YT ++++ +CA  S L+ GR VH +V  +G  S+L V 
Sbjct: 651  GLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVT 710

Query: 145  AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGV 203
             AL+N YAK  +V+ AR VF ++P K +V+WN+MI GY QN    EA+ LF ++ + F  
Sbjct: 711  NALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQF-- 768

Query: 204  NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
             PD  T  CVL ACA L  +D GR +H  I+ +G   ++ +A +L++MYA+CG +  A+ 
Sbjct: 769  KPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQL 828

Query: 264  IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
            +FDM+ + ++I+WT MI+GYGMHG+G EA+  F+ MR  G+ P+  +F  +L+AC+H+GL
Sbjct: 829  LFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGL 888

Query: 324  VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
            + EG + F SMR E G+ P +EH+ C+VDL  R G L++AYKF++  +  KP   +W  +
Sbjct: 889  LNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIES-MPIKPDTTIWGVL 947

Query: 384  LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
            L  C++H +  L  +VAEH+  +EP+N  +YV+L+N+YA A + + V+ +R  M ++G K
Sbjct: 948  LSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFK 1007

Query: 444  KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
            ++ G S +EV  K  +F  G+  HP    I   L +L  + +   Y       +   ++ 
Sbjct: 1008 QNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDM 1067

Query: 504  EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
            E+E     HSEK A+AFG++   PG T+R+ KN R+C DCH   KF+S  T REI++RD 
Sbjct: 1068 EKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDS 1127

Query: 564  LRFHHFKRGSCSCLD 578
             RFHHFK G CSC D
Sbjct: 1128 NRFHHFKDGLCSCRD 1142



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 226/443 (51%), Gaps = 22/443 (4%)

Query: 10  AYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           +Y ++L+     K L+   +VH+ +I  G     ++  KL+ +  + G +   ++IF  I
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKI 430

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
            +   FL+N L+   +K     +S+  +++M    +  + YTF+ V+K  A L  +   +
Sbjct: 431 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 490

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            VH +V   G+ S+  V  +L+  Y K   V+ A  +FD + +  VV+WNSMI+G   NG
Sbjct: 491 RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNG 550

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
           F+   + +F  M   GV  D TT V VL A A +G++ LGR +H F V       VV + 
Sbjct: 551 FSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSN 610

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           +L++MY++CGN++ A E+F  M +  +++WT+ I+ Y   G  ++A+ LF  M++ GVRP
Sbjct: 611 TLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRP 670

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           +  T  +++ ACA +  + +G  V + + +  G+   +     +++++ + G + EA   
Sbjct: 671 DIYTVTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLV 729

Query: 367 -----VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE-NPGHYVMLSNI 420
                VKD++        W  M+G    +    L  E  E  L ++ +  P    M   +
Sbjct: 730 FSKIPVKDIVS-------WNTMIGG---YSQNSLPNEALELFLDMQKQFKPDDITMACVL 779

Query: 421 YALAG--RMDRVEVVRNIMIQKG 441
            A AG   +D+   +   ++++G
Sbjct: 780 PACAGLAALDKGREIHGHILRRG 802


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/550 (37%), Positives = 335/550 (60%), Gaps = 6/550 (1%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLL-SLVCDAGFITYAQR 61
           P    Y  +LK   RL  ++Q   VHAHL+ + +  +  +L  ++ ++    G +  A+R
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P+ D   +  LI   S+ N   D+LL + +M+   + P+++T S+++K+      
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHG 204

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L+ G  +H      GY S ++V +ALV+ YA+  ++D A+  FD MP KS V+WN++ISG
Sbjct: 205 LDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISG 264

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + + G  + A+ L   M+     P   T   V +ACA +G ++ G+WVH  ++  GL + 
Sbjct: 265 HARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLI 324

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +  +L++MYA+ G++  A+ +FD + + +V++W  M++G   HG G E ++ F +M  
Sbjct: 325 AFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLR 384

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ PN ++F+ VL+AC+H+GL+ EG   F  M++ Y + P V H+V  VDL GR GLL+
Sbjct: 385 IGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLD 443

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
            A +F++++  E P  AVW A+LGAC+MHKN +LGV  AE    ++P + G  ++LSNIY
Sbjct: 444 RAERFIREMPIE-PTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIY 502

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AGR   V  VR +M + G+KK    S VE++   +LF   D++HP   EI    +E+ 
Sbjct: 503 ASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEIS 562

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
           G+ +E GYVP++   +  ++++ERE  L+YHSEKLALAF L+ T  G  IRI KN+R+C 
Sbjct: 563 GKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCG 622

Query: 542 DCHSAIKFIS 551
           DCH+AIKF+S
Sbjct: 623 DCHAAIKFVS 632



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 186/379 (49%), Gaps = 45/379 (11%)

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY-DSDLHVQAALVNFYAKSNNVDV 159
           ++ P    +S ++K C  L  +  GR VH H+  S + D+ L +Q  +VN YAK   +D 
Sbjct: 82  SLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDD 141

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           AR++FD MP K +V W ++I+G+ QN   ++A+ LF  M   G+ P+  T   +L A   
Sbjct: 142 ARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGS 201

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
              +D G  +H F +  G   +V + ++L++MYARCG++  A+  FD M   + ++W A+
Sbjct: 202 EHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNAL 261

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEY 338
           ISG+   G G  A+ L  +M+    +P + T+ +V SACA  G +++G  V A M +   
Sbjct: 262 ISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGL 321

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH-------- 390
            L+  + +   ++D++ +AG +++A +    ++  KP    W  ML  C  H        
Sbjct: 322 KLIAFIGN--TLLDMYAKAGSIDDAKRVFDRLV--KPDVVSWNTMLTGCAQHGLGKETLD 377

Query: 391 ---KNFDLGVEVAE--------------------------HLLSVEPENPGHYVMLSNIY 421
              +   +G+E  E                              VEP+ P HYV   ++ 
Sbjct: 378 RFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVP-HYVTFVDLL 436

Query: 422 ALAGRMDRVE-VVRNIMIQ 439
              G +DR E  +R + I+
Sbjct: 437 GRVGLLDRAERFIREMPIE 455


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/630 (37%), Positives = 344/630 (54%), Gaps = 53/630 (8%)

Query: 2    KNKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
            K   P+     ++LK       LQ    VHA ++  G      +   +L L        Y
Sbjct: 384  KGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEY 443

Query: 59   AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM----------IVSNISPSNY- 107
            A+R+F  +   D   +N +I    +A     SL  +RR+          IV  +    Y 
Sbjct: 444  AERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYE 503

Query: 108  --------------------TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL 147
                                TFS  +   + LS + LGR +H  V   G+DSD  ++++L
Sbjct: 504  RHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSL 563

Query: 148  VNFYAKSNNVDVAR----------------KVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
            V  Y K   +D A                 +V  + P   +V+W SM+SGY  NG  ++ 
Sbjct: 564  VEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDG 623

Query: 192  IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
            +  F LM    V  D  T   +++ACA  G ++ GR VH ++   G  ++  + +SLI+M
Sbjct: 624  LKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDM 683

Query: 252  YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
            Y++ G++  A  +F   +E N++ WT+MISGY +HG G  A+ LF  M   G+ PN VTF
Sbjct: 684  YSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTF 743

Query: 312  VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV-KDV 370
            + VL+AC+HAGL++EG R F  M+  Y + PGVEH   MVDL+GRAG L +   F+ K+ 
Sbjct: 744  LGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKN- 802

Query: 371  IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
             G     +VW + L +C++HKN ++G  V+E LL V P +PG YV+LSN+ A   R D  
Sbjct: 803  -GISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEA 861

Query: 431  EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
              VR++M Q+G+KK  G S +++  + + F MGD+SHP  +EIY YLD L+GR +E GY 
Sbjct: 862  ARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGYS 921

Query: 491  PESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFI 550
             + +  M ++EEE+ E  + +HSEKLA+ FG++ T+    IRI+KNLR+C DCH+ IK+ 
Sbjct: 922  FDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYA 981

Query: 551  SVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            S   +REIIVRD  RFHHFK GSCSC DYW
Sbjct: 982  SQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 199/430 (46%), Gaps = 50/430 (11%)

Query: 23  PLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNS 82
           PL  +HA  +  G  ++ +    LL+L   +  + +AQ++F  IP  ++  +  LI   +
Sbjct: 307 PLGTLHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFA 366

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
           +A  S      +R M      P+ YT S+V+K C+  + L LG+ VH  +  +G D D+ 
Sbjct: 367 RAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVV 426

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN------ 196
           +  ++++ Y K    + A ++F+ M +  VV+WN MI  Y + G  ++++ +F       
Sbjct: 427 LGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKD 486

Query: 197 -------------------------LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
                                     M + G    + T    L   + L  ++LGR +H 
Sbjct: 487 VVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHG 546

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREI-----FDMMSELN-----------VIA 275
            ++  G D +  + +SL+ MY +CG + KA  I      D++ + N           +++
Sbjct: 547 MVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVS 606

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           W +M+SGY  +G   + ++ F  M    V  +  T   ++SACA+AG+++ G  V A + 
Sbjct: 607 WGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYV- 665

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
           Q+ G          ++D++ ++G L++A+   +     +P   +WT+M+    +H     
Sbjct: 666 QKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQ--SNEPNIVMWTSMISGYALHGQGMH 723

Query: 396 GVEVAEHLLS 405
            + + E +L+
Sbjct: 724 AIGLFEEMLN 733



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 9/225 (4%)

Query: 103 SPSNYTFSAV-IKSCA--HLSILN----LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155
           S S+Y +  + ++SC+  H ++ N    LG  +H     +G    L+    L+  YAKSN
Sbjct: 280 SISSYFYPPLWLQSCSLYHFTLSNSPPPLG-TLHALYVKNGSLQTLNPANHLLTLYAKSN 338

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
           N+  A+K+FD +P ++   W  +ISG+ + G ++    LF  M+  G  P+  T   VL 
Sbjct: 339 NMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLK 398

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
            C+   ++ LG+ VH +++  G+DV+VVL  S++++Y +C     A  +F++M+E +V++
Sbjct: 399 CCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVS 458

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           W  MI  Y   G   +++++F R+    V   N T V  L  C +
Sbjct: 459 WNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWN-TIVDGLLQCGY 502


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/561 (37%), Positives = 326/561 (58%), Gaps = 20/561 (3%)

Query: 33  VAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLL 92
           V    R   + T LL+    +  +  A+  F  I SPD   +N +     + + S ++L+
Sbjct: 382 VVSATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALV 441

Query: 93  FYRRMIVSNISPSNYTFSAVIKSCAHL---SILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
            + RM++  + PS  TF   + +CA     +   +G+ +   +  +G + D  V  A +N
Sbjct: 442 LFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLN 501

Query: 150 FYAKSNNVDVARKVFDRMPD--KSVVAWNSMISGYEQNGFAKEAIGLFNLMR-DFGVNPD 206
            YAK  ++  AR VF+R+    +  + WNSM++ Y  +G  KEA  LF  M  +  V P+
Sbjct: 502 MYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPN 561

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T V VL A      I  GR +H  +V  G + + V+  +L+NMYA+CG++  A+ IFD
Sbjct: 562 KVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFD 621

Query: 267 MMS--ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
             S  + +VIAWT++I+GY  +G    A++LF  M+  GVRPN+VTF++ L+AC H G +
Sbjct: 622 KSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKL 681

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK-----DVIGEKPAPAV 379
           ++G  + + M  ++G+LP  +H  C+VDL GR G L+EA K ++     DVI        
Sbjct: 682 EQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVI-------T 734

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W A+L ACK  K  + G   AE ++ ++PE    Y++L+++YA AGR +    +R  M+ 
Sbjct: 735 WMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLD 794

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           KG++   G S VEV+Q+ + FS GDKSHP + EIY  L+ L    + AGYV ++   +H+
Sbjct: 795 KGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHD 854

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           + +E +E  L  HSEKLA+AFGLM T  G  +R++KNLR+C DCH+A K IS  T R+I+
Sbjct: 855 VSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDIL 914

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           +RD  R+HHF  G+CSC DYW
Sbjct: 915 MRDSSRYHHFTSGTCSCGDYW 935



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 198/409 (48%), Gaps = 36/409 (8%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP---DSFLFNTLI--- 78
           +++H+ +    +  +  +   L+S+    G +  A++ F  +P     D   +N +I   
Sbjct: 161 RRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAF 220

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSN-YTFSAVIKSCAHLSILNLG--RAVHCHVFVS 135
           +RN  A    ++L  +R M      P N  TF +V+ SC    +L+L   RA+H  +  +
Sbjct: 221 LRNGSAR---EALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGA 277

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVF----DRMPDKSVVAWNSMISGYEQNGFAKEA 191
           G + +  V+ ALV+ Y K  ++D A +VF    D  P  S+V  ++MIS   QNG+ +E+
Sbjct: 278 GIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQES 337

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV-----NVVLAT 246
           + LF  M   G  P   T V VL AC+ L    +G     F++ Q ++V     + VL T
Sbjct: 338 LRLFFAMNLEGTKPSGVTLVSVLNACSML---QVGS-ATAFVLEQAMEVVSATRDNVLGT 393

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           +L+  YAR  ++ +AR  FD +   +V++W AM + Y  H    EA+ LF RM   GVRP
Sbjct: 394 TLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRP 453

Query: 307 NNVTFVAVLSACA-----HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
           +  TF+  L+ACA      A  +  G R+  S+ +E GL          ++++ + G L 
Sbjct: 454 SVATFITALTACAAYPPQTASAI--GKRI-QSLLEEAGLEGDTAVANATLNMYAKCGSLA 510

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410
           +A    + +   +     W +ML A   H    LG E  E   ++E E 
Sbjct: 511 DARAVFERISPARRDCITWNSMLAAYGHH---GLGKEAFELFQAMEAEK 556



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 211/434 (48%), Gaps = 31/434 (7%)

Query: 11  YEAILKAGPRLKPLQQ---VHAHLIVAGYG-RSRSML-TKLLSLVCDAGFITYAQRIFFC 65
           Y  +L+A  RL+ L+Q   +HAH++       + S L + L+ +    G +  A+ +   
Sbjct: 46  YGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALADR 105

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLL-FYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
             S  S    T +IR    +   D  +  + RM    + P+ +   A++ +C+ L  L  
Sbjct: 106 FASVYSC---TAMIRAWMEHGRPDKAMELFDRM---EVRPNCHALIALVNACSCLGNLAA 159

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP---DKSVVAWNSMISG 181
           GR +H  +    ++ +  +  AL++ Y+K  ++  A++ FDR+P    + VV WN+MIS 
Sbjct: 160 GRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISA 219

Query: 182 YEQNGFAKEAIGLFNLM-RDFGVNPDSTTCVCVLAACAQLGDIDLG--RWVHEFIVGQGL 238
           + +NG A+EA+ LF  M RD    P+S T V VL +C + G + L   R +H  IVG G+
Sbjct: 220 FLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGI 279

Query: 239 DVNVVLATSLINMYARCGNVSKAREIF----DMMSELNVIAWTAMISGYGMHGYGTEAVE 294
           +    + T+L++ Y + G++  A E+F    D     +++  +AMIS    +G+  E++ 
Sbjct: 280 EREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLR 339

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV---CMV 351
           LF  M   G +P+ VT V+VL+AC+   ++Q G      + Q   ++     +V    ++
Sbjct: 340 LFFAMNLEGTKPSGVTLVSVLNACS---MLQVGSATAFVLEQAMEVVSATRDNVLGTTLL 396

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411
             + R+  L  A +   D I + P    W AM  A   H      + + E +L +E   P
Sbjct: 397 TTYARSNDLPRA-RATFDAI-QSPDVVSWNAMAAAYLQHHRSREALVLFERML-LEGVRP 453

Query: 412 GHYVMLSNIYALAG 425
                ++ + A A 
Sbjct: 454 SVATFITALTACAA 467



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 162/306 (52%), Gaps = 24/306 (7%)

Query: 96  RMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH--VQAALVNFYAK 153
           R+I      +  T+  ++++C  L  L  G+ +H H+     D   H  + + L+  +AK
Sbjct: 33  RIIADQGHCAPSTYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAK 92

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
             N+  A  + DR    SV +  +MI  + ++G   +A+ LF+ M    V P+    + +
Sbjct: 93  CGNLAEAEALADRFA--SVYSCTAMIRAWMEHGRPDKAMELFDRME---VRPNCHALIAL 147

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM---SE 270
           + AC+ LG++  GR +H  I  +  + N VL  +LI+MY++CG++  A++ FD +   S+
Sbjct: 148 VNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASK 207

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV-RPNNVTFVAVLSACAHAGLVQEGHR 329
            +V+ W AMIS +  +G   EA++LF  M   G   PN+VTFV+VL +C  AGL+     
Sbjct: 208 RDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLS---- 263

Query: 330 VFASMRQEYGLL--PGVEHH----VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT-- 381
               +R  +G +   G+E        +VD +G+ G L++A++       E+P+ ++ T  
Sbjct: 264 -LEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCS 322

Query: 382 AMLGAC 387
           AM+ AC
Sbjct: 323 AMISAC 328



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 141/302 (46%), Gaps = 32/302 (10%)

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDV--NVVLATSLINMYARCGNVSKAREIFDMMS 269
           C+L AC +L  +  G+ +H  I+ + +D+  +  LA+ LI M+A+CGN+++A  + D  +
Sbjct: 48  CLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALADRFA 107

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             +V + TAMI  +  HG   +A+ELF RM    VRPN    +A+++AC+  G +  G R
Sbjct: 108 --SVYSCTAMIRAWMEHGRPDKAMELFDRME---VRPNCHALIALVNACSCLGNLAAGRR 162

Query: 330 VFASMR----QEYGLLPGVEHHVCMVDLFGRAGLLNEAYK-FVKDVIGEKPAPAVWTAML 384
           + + +     +E  +L        ++ ++ + G L +A + F +     K     W AM+
Sbjct: 163 IHSQISDRDFEENSVLGNA-----LISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMI 217

Query: 385 GACKMHKNFDLGVEVAEHL--LSVEPENPGHYVMLSNIYALAG--RMDRVEVVRNIMIQK 440
            A   + +    +++   +      P N   +V + +    AG   ++ V  +   ++  
Sbjct: 218 SAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGA 277

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGD---------KSHPNTNEIYQYLDELMGRCREAGYVP 491
           G+++     T  VD    L S+ D            P+T+ +      ++  C + G+  
Sbjct: 278 GIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLV--TCSAMISACWQNGWPQ 335

Query: 492 ES 493
           ES
Sbjct: 336 ES 337


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/584 (35%), Positives = 345/584 (59%), Gaps = 5/584 (0%)

Query: 1   MKNKQPHSPAYEAILKAGPRL---KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           M N +P++    ++L A   L   +  + VH   +  G+  +  + T L+ +    G + 
Sbjct: 115 MGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMG 174

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A+++F  +   +   +N ++   S   FS +++  +  M    +    YT  ++I +  
Sbjct: 175 VARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASL 234

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            +  L +G  +H  +  +GY++D H++ AL++ Y   N VD A +VF  M  K V AW  
Sbjct: 235 SVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTL 294

Query: 178 MISGYEQNGFAKEAIGLFNLMRDF-GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
           M++G+        AI  FN M     +  DS   + +L++C+  G +  GR VH   +  
Sbjct: 295 MLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKT 354

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
               N+ + +++I+MYA CGN+  A+  F  M E +V+ W AMI+G GM+GYGT+A++LF
Sbjct: 355 CFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLF 414

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
            +M+  G+ P+  TFV+VL AC+HAG+V EG ++F  M +    +P ++H+ C++D+ GR
Sbjct: 415 LQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGR 474

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
           AG L+ AY F+ + +  +P   V++ +LGAC++H N  LG E+++ +  +EP + G+YV+
Sbjct: 475 AGQLDAAYSFINN-MPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVL 533

Query: 417 LSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQY 476
           LSN+YALAG  + V++ R  +  K LKK  G+S++E++Q+ Y F  G+K HP   +I   
Sbjct: 534 LSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGI 593

Query: 477 LDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKN 536
           L  L+ + ++AGYVP +   + ++ ++ ++  L +HSEK+A+AFGLMRT PG  IRI KN
Sbjct: 594 LKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRITKN 653

Query: 537 LRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           LR C DCHSA KF+S    R ++++D  RFH F+ G CSC DYW
Sbjct: 654 LRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 239/459 (52%), Gaps = 37/459 (8%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P + ++ +IL+    LKPLQQ+HA +I +G   +  +   L++     G +  A++IF  
Sbjct: 22  PLAQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHH 81

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
            P  +   +  LI   +K +   +++  +R M + N  P+  T S+V+ + A+L ++ + 
Sbjct: 82  TPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIA 141

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           ++VHC     G++ ++ V+ ALV+ Y+K   + VAR++F+ M +++VV+WN+++SGY  +
Sbjct: 142 KSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDH 201

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           GF++EAI LFNLMR  G+  D  T + ++ A   +G + +G  +H FI+  G + +  + 
Sbjct: 202 GFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIK 261

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA-HGV 304
           T+L+++Y     V  A  +F  M   +V AWT M++G+    +   A++ F++M     +
Sbjct: 262 TALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNL 321

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
           + +++  + +LS+C+H+G +Q+G RV A +  +      +     ++D++   G L +A 
Sbjct: 322 KLDSIVLMGILSSCSHSGALQQGRRVHA-LAIKTCFANNIFVGSAVIDMYANCGNLEDAK 380

Query: 365 KFV-----KDVI----------------------------GEKPAPAVWTAMLGACKMHK 391
           +F      KDV+                            G  P  + + ++L AC    
Sbjct: 381 RFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAG 440

Query: 392 NFDLGVEVAEHLLSVEPENPG--HYVMLSNIYALAGRMD 428
               G+++  H++    + P   HY  + +I   AG++D
Sbjct: 441 MVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLD 479


>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
 gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
          Length = 601

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/514 (42%), Positives = 302/514 (58%), Gaps = 9/514 (1%)

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
           P +F  N  I+R+ +     D+L F RR        + ++ S V+  C  L+     R +
Sbjct: 95  PSTFRLNA-ILRSLRG---PDALRFLRRARALGRRGNAFSLSIVLGHCRALA---HARQL 147

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H +V   G+  D  +  +LV+ YA   + D ARKVFD MP +  +AWN +I+ Y +N   
Sbjct: 148 HANVVAEGHSPDALLATSLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITCYTRNRRT 207

Query: 189 KEAIGLFNLMR--DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
           K+A+ LF+ MR  + G  PD  TC+ +L AC  LG +D G  V E+ V  G    + +  
Sbjct: 208 KDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGYGGELKVRN 267

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           SLI MY +CG V KA ++F    + +V+ W+AMISG   +G+G +A+  F  M   GV P
Sbjct: 268 SLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEMGRSGVAP 327

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           +  TF  VLSAC+H+GLV EG + F  M  EY L P V H+ CMVDL GRAGLL++AY+ 
Sbjct: 328 DEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYEL 387

Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
           V   +   P   +W  +LGAC++H + DLG  V  HL+ ++ +  G YV+L N YA    
Sbjct: 388 VVKDMRVAPDATIWRTLLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLLNTYAAVED 447

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE 486
             +V  VR +M +KG++   G +TVE++ + + F   D SHP   EIY+ LDE+    R 
Sbjct: 448 WGKVAEVRKLMKEKGIQTTPGCTTVELNGEIHEFIAADASHPRKAEIYEKLDEINKHLRI 507

Query: 487 AGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSA 546
           AGYVP   S +H+L+ E +E +L YHSEKLA+AF L+ T     IR+ KNLR+CVDCH+ 
Sbjct: 508 AGYVPNVSSELHDLDSEGKECALAYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNF 567

Query: 547 IKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            K  S   +R +IVRDR RFHHFK   CSC DYW
Sbjct: 568 TKVFSGVYHRLVIVRDRTRFHHFKEFQCSCNDYW 601



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 132/269 (49%), Gaps = 5/269 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+HA+++  G+     + T L+S     G    A+++F  +P  D+  +N LI   ++ 
Sbjct: 145 RQLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITCYTRN 204

Query: 85  NFSTDSLLFYRRMI--VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
             + D+L  +  M    +   P + T   ++++C  L  L+ G  V  +    GY  +L 
Sbjct: 205 RRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGYGGELK 264

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           V+ +L+  Y K   VD A +VF   P KSVV W++MISG   NGF K+AI  F  M   G
Sbjct: 265 VRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEMGRSG 324

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKA 261
           V PD  T   VL+AC+  G +D G    + +  +  L  NV     ++++  R G + +A
Sbjct: 325 VAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQA 384

Query: 262 REIF--DMMSELNVIAWTAMISGYGMHGY 288
            E+   DM    +   W  ++    +HG+
Sbjct: 385 YELVVKDMRVAPDATIWRTLLGACRIHGH 413


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/530 (39%), Positives = 321/530 (60%), Gaps = 4/530 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A ++F      D   +NT++    +   +T++L   ++M+ + ++ SNYT+S V 
Sbjct: 206 GDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVF 265

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---K 170
                LS  +LGR +H  V V+  + D  V  +L++ Y K   ++ A  +FDR  D    
Sbjct: 266 ALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTED 325

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH 230
              AW++M++GY QNG  +EA+  F  M   GV         V +ACA  G ++ GR VH
Sbjct: 326 RQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVH 385

Query: 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
            F+   G   +  LA+++++MY++ G++  A  IF      NV  WT M+  Y  HG G 
Sbjct: 386 GFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGR 445

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350
            A+E+F RM+A  + PN +T VAVLSAC+H+GLV +G+  F  M++EYG++P  EH+ CM
Sbjct: 446 MALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCM 505

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410
           VDL+GRAGLL++A  F+++      A  VW  +L AC++HK+ +     +E L+ +E  +
Sbjct: 506 VDLYGRAGLLDKAKNFIEENKISHEA-VVWKTLLSACRLHKHIEYAQLASEKLVQLEQYD 564

Query: 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNT 470
            G YV++SN+YA   +      +R+ M ++ ++K  G S + +    + F   D SHP +
Sbjct: 565 AGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRS 624

Query: 471 NEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT 530
            EIY YL++LM R +E GY   ++  +H++EEE+RE SL++HSEKLA+AFG++ T  G  
Sbjct: 625 AEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVGTA 684

Query: 531 IRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +RI KNLR+C DCH AIKFI+ AT+REI+VRD  RFHHFK G CSC D+W
Sbjct: 685 LRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 171/383 (44%), Gaps = 51/383 (13%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI--VSNISPSNYTFSAVIKSC 116
           A R+F   P+     + ++I   ++     D +  +  M+      +P+ +  + V++ C
Sbjct: 77  AHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCC 136

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS----- 171
           A L  +  GR +H  +  SG   D+ +  A+++ YAK  +   AR+ F  M  K      
Sbjct: 137 AGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWN 196

Query: 172 --------------------------VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
                                     V +WN+++SG  ++G   EA+G    M   GV  
Sbjct: 197 IVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTF 256

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
            + T   V A    L   DLGR +H  +V   L+ +  +  SL++MY +CG +  A  IF
Sbjct: 257 SNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIF 316

Query: 266 DMMSELN---VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           D  S+       AW+ M++GY  +G   EA+E F RM   GV        +V SACA+AG
Sbjct: 317 DRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAG 376

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHV------CMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           +V++G       RQ +G +  + H         +VD++ ++G L +A +  +    +   
Sbjct: 377 MVEQG-------RQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRS--AQTKN 427

Query: 377 PAVWTAMLGACKMHKNFDLGVEV 399
            A+WT ML +   H    + +E+
Sbjct: 428 VALWTTMLCSYASHGQGRMALEI 450



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 129/271 (47%), Gaps = 9/271 (3%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF---FCIPSPDSFLFNTLIIRN 81
           +Q+H  ++VA       +   L+ + C  G +  A  IF           F ++T++   
Sbjct: 278 RQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGY 337

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
            +     ++L F+RRM+   +    +  ++V  +CA+  ++  GR VH  V   G+  D 
Sbjct: 338 VQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDA 397

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            + +A+V+ Y+KS +++ A ++F     K+V  W +M+  Y  +G  + A+ +F+ M+  
Sbjct: 398 PLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAE 457

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ---GLDVNVVLATSLINMYARCGNV 258
            + P+  T V VL+AC+  G +  G   H F + Q   G+  N      ++++Y R G +
Sbjct: 458 KIMPNEITLVAVLSACSHSGLVSDG--YHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLL 515

Query: 259 SKAREIFDMMS-ELNVIAWTAMISGYGMHGY 288
            KA+   +        + W  ++S   +H +
Sbjct: 516 DKAKNFIEENKISHEAVVWKTLLSACRLHKH 546


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/559 (37%), Positives = 337/559 (60%), Gaps = 10/559 (1%)

Query: 27   VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
            VHA +IVAG+     +   L+++    G +  A+++   +P PD   +N LI  +++   
Sbjct: 1171 VHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEE 1230

Query: 87   STDSLLFYRRMIVSNISPSNY-TFSAVIKSC-AHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
              +++  Y+ +    I P+NY T  +V+ +C A   +L  G  +H H+ ++G++SD +V+
Sbjct: 1231 PNEAVKAYKLIREKGI-PANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVK 1289

Query: 145  AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             +L+  YAK  +++ +  +FD + +KS + WN+M++    +G  +EA+ +F  MR+ GVN
Sbjct: 1290 NSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVN 1349

Query: 205  PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
             D  +    LAA A L  ++ G+ +H  ++  G + ++ +  + ++MY +CG +    ++
Sbjct: 1350 LDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKM 1409

Query: 265  FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
                   + ++W  +IS +  HG   +A E FH M   G +P++VTFV++LSAC H GLV
Sbjct: 1410 LPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLV 1469

Query: 325  QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA---VWT 381
             EG   + SM +E+G+ PG+EH VC++DL GR+G L+ A  F+K    E P P     W 
Sbjct: 1470 DEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIK----EMPVPPNDLAWR 1525

Query: 382  AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
            ++L AC++H N +L  + AEHLL ++P +   YV+ SN+ A +G+ + VE +R  M    
Sbjct: 1526 SLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNN 1585

Query: 442  LKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE 501
            +KK    S V++  K + F MG+K HP  + I   L ELM   +EAGYVP++  A+H+++
Sbjct: 1586 IKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMD 1645

Query: 502  EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
            EE++EY+L  HSE+LALAFGL+ T    T+RI KNLR+C DCHS  KF+S    R+I++R
Sbjct: 1646 EEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLR 1705

Query: 562  DRLRFHHFKRGSCSCLDYW 580
            D  RFHHF  G CSC DYW
Sbjct: 1706 DPYRFHHFSGGKCSCGDYW 1724



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 239/452 (52%), Gaps = 5/452 (1%)

Query: 10  AYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
            Y + L+A   L+ L    QV   +    +  +  + + L+      G +  A  +F  +
Sbjct: 133 TYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTM 192

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
              D   +N +I   +   F+ DS   +R M+   + P  YT  +V+++ A    L +  
Sbjct: 193 MERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIAN 252

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H  +   GY S   V   L+N YAK+ ++  A+ +   M  K + +  ++I+GY   G
Sbjct: 253 QIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEG 312

Query: 187 -FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
            ++ +A+ LF  M    +  D      +L  CA L    LG  +H F +      +V + 
Sbjct: 313 IYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMG 372

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
            +LI+MYA+ G +  A+  FD M E NVI+WT++ISGY  HGYG  AV L+ +M + G +
Sbjct: 373 NALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFK 432

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           PN+VTF+++L AC+H GL  EG   F +M  +Y + P  EH+ CMVDLF R GLL EAY 
Sbjct: 433 PNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYN 492

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
            +   I  K   ++W A+LGA  ++    LG E A +L +++PEN  +YV+L++IY+ AG
Sbjct: 493 LLCK-IDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAG 551

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKN 457
             D    +R +M ++  KK+ GYS  +  +K+
Sbjct: 552 LWDDAWKIRKLMEERSTKKNAGYSFFQATKKS 583



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 193/403 (47%), Gaps = 5/403 (1%)

Query: 21   LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
            LK  + +H  ++  G   +  +   LL+L  +AG    A+ +F  +   D   +N+++  
Sbjct: 1064 LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 1123

Query: 81   NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
              +     D L     ++      ++ TF++ + +C++   L   + VH  + V+G+   
Sbjct: 1124 YVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDF 1183

Query: 141  LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
            L V  ALV  Y K   +  A+KV   MP    V WN++I G+ +N    EA+  + L+R+
Sbjct: 1184 LIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIRE 1243

Query: 201  FGVNPDSTTCVCVLAACAQLGD-IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+  +  T V VL AC+   D +  G  +H  IV  G + +  +  SLI MYA+CG+++
Sbjct: 1244 KGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLN 1303

Query: 260  KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
             +  IFD +   + I W AM++    HG G EA+++F  MR  GV  +  +F   L+A A
Sbjct: 1304 SSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATA 1363

Query: 320  HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
            +  +++EG ++   +  + G    +      +D++G+ G +++  K +   I        
Sbjct: 1364 NLAVLEEGQQLHG-LVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLS-- 1420

Query: 380  WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
            W  ++ A   H  F    E    +L + P+ P H   +S + A
Sbjct: 1421 WNILISAFARHGCFQKARETFHEMLKLGPK-PDHVTFVSLLSA 1462



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 200/399 (50%), Gaps = 13/399 (3%)

Query: 26   QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
            QVH  ++  G      + T L+      G +  AQ++F  +P  +   + +L++  S + 
Sbjct: 867  QVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSG 926

Query: 86   FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
               + L  Y+RM    +S +  TF+ V  SC  L    LG  V  H+   G++  + V  
Sbjct: 927  NPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVAN 986

Query: 146  ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
            +L++ ++  ++V+ A  VFD M +  +++WN+MIS Y  +G  +E++  F+ MR      
Sbjct: 987  SLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNET 1046

Query: 206  DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
            +STT   +L+ C+ + ++  GR +H  +V  GLD NV +  +L+ +Y+  G    A  +F
Sbjct: 1047 NSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVF 1106

Query: 266  DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
              M+E ++I+W +M++ Y   G   + +++   +   G   N+VTF + L+AC++   + 
Sbjct: 1107 QAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLI 1166

Query: 326  EGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
            E   V A +     ++ G    +     +V ++G+ G++ EA K ++ +   +P    W 
Sbjct: 1167 ESKIVHALI-----IVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTM--PQPDRVTWN 1219

Query: 382  AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
            A++G     +N +    V  + L  E   P +Y+ + ++
Sbjct: 1220 ALIGG--HAENEEPNEAVKAYKLIREKGIPANYITMVSV 1256



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 144/276 (52%), Gaps = 11/276 (3%)

Query: 100 SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV 159
           + + PS Y    +++ C        G  +H H+  +G+ SDLH+   L+ FY K  +V  
Sbjct: 26  TRLDPSLYL--KILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIA 83

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           AR VFD MP++SVV+W +M+SGY QNG  ++A  LF+ MR  GV  +  T    L AC  
Sbjct: 84  ARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTS 143

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           L  +D+G  V   I       N+ + ++L++ +++CG +  A  +F  M E +V++W AM
Sbjct: 144 LRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAM 203

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ--- 336
           I GY + G+  ++  +F  M   G+ P+  T  +VL A A  G +   +++   + Q   
Sbjct: 204 IGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGY 263

Query: 337 -EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
             Y ++ G+     +++ + + G L  A    K ++
Sbjct: 264 GSYDIVTGL-----LINAYAKNGSLRSAKDLRKGML 294



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 193/397 (48%), Gaps = 5/397 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H HLI  G+G    + TKL+      G +  A+ +F  +P      +  ++   S+   
Sbjct: 52  IHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGR 111

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
              + + +  M    +  + +T+ + +++C  L  L++G  V   +    +  +L V++A
Sbjct: 112 FEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSA 171

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           LV+F++K   ++ A  +F  M ++ VV+WN+MI GY   GFA ++  +F  M   G+ PD
Sbjct: 172 LVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPD 231

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T   VL A A+ G + +   +H  I   G     ++   LIN YA+ G++  A+++  
Sbjct: 232 CYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRK 291

Query: 267 MMSELNVIAWTAMISGYGMHG-YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
            M + ++ + TA+I+GY   G Y  +A++LF  M    +  ++V   ++L+ CA+     
Sbjct: 292 GMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFA 351

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            G ++ A    +Y     V     ++D++ ++G + +A +   ++  E+     WT+++ 
Sbjct: 352 LGTQIHA-FALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEM--EEKNVISWTSLIS 408

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
               H    + V + + + S +   P     LS ++A
Sbjct: 409 GYAKHGYGHMAVSLYKKMES-KGFKPNDVTFLSLLFA 444



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 145/270 (53%), Gaps = 10/270 (3%)

Query: 125  GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
            G+A+H    V   +  +     L+N Y+K  N++ AR VFD M  ++  +W++M+SGY +
Sbjct: 763  GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 185  NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI-DLGRWVHEFIVGQGLDVNVV 243
             G  +EA+GLF  M   GV P+      ++ AC++ G + D G  VH F+V  G+  +V 
Sbjct: 823  VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 882

Query: 244  LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
            + T+L++ Y   G V  A+++F+ M + NV++WT+++ GY   G   E + ++ RMR  G
Sbjct: 883  VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 942

Query: 304  VRPNNVTFVAVLSACAHAGLVQE---GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
            V  N  TF  V S+C   GL+++   G++V   + Q YG    V     ++ +F     +
Sbjct: 943  VSGNQNTFATVTSSC---GLLEDQVLGYQVLGHIIQ-YGFEDSVSVANSLISMFSSFSSV 998

Query: 361  NEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
             EA  +V D + E    + W AM+ A   H
Sbjct: 999  EEAC-YVFDHMNECDIIS-WNAMISAYAHH 1026



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 149/287 (51%), Gaps = 1/287 (0%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            + +HA  IV            L+++    G I +A+ +F  +   +   ++T++    + 
Sbjct: 764  KALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRV 823

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL-NLGRAVHCHVFVSGYDSDLHV 143
                +++  + +M    + P+ +  +++I +C+    + + G  VH  V  +G   D++V
Sbjct: 824  GLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYV 883

Query: 144  QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
              ALV+FY     V  A+K+F+ MPD +VV+W S++ GY  +G   E + ++  MR  GV
Sbjct: 884  GTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGV 943

Query: 204  NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            + +  T   V ++C  L D  LG  V   I+  G + +V +A SLI+M++   +V +A  
Sbjct: 944  SGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACY 1003

Query: 264  IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
            +FD M+E ++I+W AMIS Y  HG   E++  FH MR      N+ T
Sbjct: 1004 VFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTT 1050



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 157/328 (47%), Gaps = 21/328 (6%)

Query: 21   LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
            LK    +HAH+++ G+     +   L+++    G +  +  IF  + +     +N ++  
Sbjct: 1267 LKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAA 1326

Query: 81   NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            N+      ++L  +  M    ++   ++FS  + + A+L++L  G+ +H  V   G++SD
Sbjct: 1327 NAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESD 1386

Query: 141  LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
            LHV  A ++ Y K   +    K+  +  ++S ++WN +IS + ++G  ++A   F+ M  
Sbjct: 1387 LHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLK 1446

Query: 201  FGVNPDSTTCVCVLAACAQLGDIDLG-----RWVHEFIVGQGLDVNVVLATSLINMYARC 255
             G  PD  T V +L+AC   G +D G         EF V  G++  V     +I++  R 
Sbjct: 1447 LGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVC----IIDLLGRS 1502

Query: 256  GNVSKARE-IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR---PNNVTF 311
            G +S A   I +M    N +AW ++++   +HG     +EL  +   H +     ++  +
Sbjct: 1503 GRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHG----NLELARKTAEHLLELDPSDDSAY 1558

Query: 312  VAVLSACAHAGLVQEGHRVFASMRQEYG 339
            V   + CA +G  ++      ++R+E G
Sbjct: 1559 VLYSNVCATSGKWED----VENLRKEMG 1582


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/563 (38%), Positives = 332/563 (58%), Gaps = 9/563 (1%)

Query: 26  QVHAHLIVAGYGRSRS--MLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFLFNTLIIRN 81
           QVH  ++  G G   +   L+K+ +    + F  + YA+ +    P+ +S+ +NTL+   
Sbjct: 11  QVHGQVVKLGMGHKDASRKLSKVFTFAALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAF 70

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           S+    T         +     P N+TF  ++K C+   +  LG+ +H  +   G+  DL
Sbjct: 71  SQTPLPTPPFHALSLFLSMPSPPDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDL 130

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
           ++Q  L++ Y++  ++ +AR +FDRMP + VV+W SMI G   +    EAI LF  M   
Sbjct: 131 YIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQC 190

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV--LATSLINMYARCGNVS 259
           GV  +  T + VL ACA  G + +GR VH  +   G++++    ++T+L++MYA+ G ++
Sbjct: 191 GVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIA 250

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            AR++FD +   +V  WTAMISG   HG   +A+++F  M + GV+P+  T  AVL+AC 
Sbjct: 251 SARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACR 310

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           +AGL++EG  +F+ +++ YG+ P ++H  C+VDL  RAG L EA  FV + +  +P   +
Sbjct: 311 NAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFV-NAMPIEPDTVL 369

Query: 380 WTAMLGACKMHKNFDLGVEVAEHL--LSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
           W  ++ ACK+H + D    + +HL    +  ++ G Y++ SN+YA  G+      VR +M
Sbjct: 370 WRTLIWACKVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTGKWCNKAEVRELM 429

Query: 438 IQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM 497
            +KGL K  G S +EVD   + F MGD +HP   EI+  L E++ + R+ GY P     +
Sbjct: 430 NKKGLVKPPGTSRIEVDGGVHEFVMGDYNHPEAEEIFVELAEVVDKIRKEGYDPRVSEVL 489

Query: 498 HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNRE 557
            E+++EE+   L +HSEKLALA+GL+R   G TIRIVKNLR C DCH  +K IS    R+
Sbjct: 490 LEMDDEEKAVQLLHHSEKLALAYGLIRIGHGSTIRIVKNLRSCEDCHEFMKLISKIYKRD 549

Query: 558 IIVRDRLRFHHFKRGSCSCLDYW 580
           IIVRDR+RFHHFK G CSC DYW
Sbjct: 550 IIVRDRIRFHHFKNGECSCKDYW 572



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 148/310 (47%), Gaps = 7/310 (2%)

Query: 6   PHSPAYEAILKAGPR--LKPL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P +  +  +LK   R  L PL +Q+HA L   G+     +   LL +  + G +  A+ +
Sbjct: 93  PDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSL 152

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P  D   + ++I      +   +++  + RM+   +  +  T  +V+++CA    L
Sbjct: 153 FDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGAL 212

Query: 123 NLGRAVHCHVFVSGYD--SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
           ++GR VH ++   G +  S  +V  ALV+ YAK   +  ARKVFD +  + V  W +MIS
Sbjct: 213 SMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMIS 272

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLD 239
           G   +G  K+AI +F  M   GV PD  T   VL AC   G I  G  +   +  + G+ 
Sbjct: 273 GLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREGFMLFSDVQRRYGMK 332

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHR 298
            ++     L+++ AR G + +A +  + M  E + + W  +I    +HG    A  L   
Sbjct: 333 PSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACKVHGDADRAERLMKH 392

Query: 299 MRAHGVRPNN 308
           +    +R ++
Sbjct: 393 LEIQDMRADD 402


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/584 (37%), Positives = 338/584 (57%), Gaps = 14/584 (2%)

Query: 8   SPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           SP+   ++ A      L+    +H   +  G  R   +   LL +    G    A+ +F 
Sbjct: 323 SPSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFK 382

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA----HLS 120
            IP  ++  +NT+I  +S+      ++  ++RM +  ++P   T+  ++++ A       
Sbjct: 383 RIPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEAR 441

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR--MPDK-SVVAWNS 177
            +  GR +H  +   GY S+  +  A+V  YA    +D A   F R  M D+  VV+WN+
Sbjct: 442 AMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNA 501

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +IS   Q+G  K A+G F  M   GV P+  TCV VL ACA    +  G  VH+ +   G
Sbjct: 502 IISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSG 561

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELF 296
           ++ N+ +AT+L +MY RCG++  AREIF+ ++ E +V+ + AMI+ Y  +G   EA++LF
Sbjct: 562 MESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLF 621

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
            RM+  G RP+  +FV+VLSAC+H GL  EG  +F SMRQ YG+ P  +H+ C VD+ GR
Sbjct: 622 WRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGR 681

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
           AG L +A + ++  +  KP   VW  +LGAC+ +++ D G      +  ++P +   YV+
Sbjct: 682 AGWLADAEELIR-CMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVV 740

Query: 417 LSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQY 476
           LSNI A AG+ D    VR  M  +GL+K  G S +E+  + + F  GD+SHP + EIY+ 
Sbjct: 741 LSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRE 800

Query: 477 LDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKN 536
           L+ L    RE GYVP++   + +++E E+E  L  HSE+LA+A G+M +S   T+R++KN
Sbjct: 801 LERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSSTD-TVRVMKN 859

Query: 537 LRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           LR+C DCH+A KFIS   N+EI+VRD  RFHHF  GSCSC DYW
Sbjct: 860 LRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 143/270 (52%), Gaps = 9/270 (3%)

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
           +L+ GR +H  +   G + +L     L+  Y K  ++    +VF R+  +   +W ++I+
Sbjct: 44  LLSQGRRIHARIVSLGLEEELGNH--LLRLYLKCESLGDVEEVFSRLEVRDEASWTTIIT 101

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
            Y ++G AK AIG+F+ M+  GV  D+ T + VL ACA+LGD+  GR +H +IV  GL  
Sbjct: 102 AYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKG 161

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
             VLA  L+++Y  CG V+ A  +F+ M E ++++W A I+     G    A+ELF RM+
Sbjct: 162 KSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQ 220

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             GVRP  +T V  L+ CA     Q  H +     +E GL   +     +   + R G L
Sbjct: 221 LEGVRPARITLVIALTVCATIRQAQAIHFIV----RESGLEQTLVVSTALASAYARLGHL 276

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            +A K V D   E+   + W AMLGA   H
Sbjct: 277 YQA-KEVFDRAAERDVVS-WNAMLGAYAQH 304



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 189/409 (46%), Gaps = 24/409 (5%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L   +++HA ++    G    +   LL L      +   + +F  +   D   + T+I  
Sbjct: 45  LSQGRRIHARIV--SLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            ++   +  ++  + RM    +     TF AV+K+CA L  L+ GR++H  +  SG    
Sbjct: 103 YTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGK 162

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
             +   L++ Y     V  A  +F++M ++ +V+WN+ I+   Q+G    A+ LF  M+ 
Sbjct: 163 SVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQL 221

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            GV P   T V  L  CA    I   + +H  +   GL+  +V++T+L + YAR G++ +
Sbjct: 222 EGVRPARITLVIALTVCAT---IRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQ 278

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A+E+FD  +E +V++W AM+  Y  HG+ +EA  LF RM   G+ P+ VT V   + C+ 
Sbjct: 279 AKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSS 338

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
                     F  M     L  G++  +     ++D++ R G   EA    K +    P 
Sbjct: 339 L--------RFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRI----PC 386

Query: 377 PAV-WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
            AV W  M+            VE+ +  + +E   P     L+ + A+A
Sbjct: 387 NAVSWNTMIAGSSQKGQMKRAVELFQR-MQLEGMAPVRATYLNLLEAVA 434


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/528 (39%), Positives = 311/528 (58%), Gaps = 4/528 (0%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP---SNYTFSAV 112
           +  A+ +F  +P  D F ++ ++  +++      +L  YRRM+    S    + +T S+ 
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSA 168

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           + +         GR +HCHV   G D+D  V +AL + YAK   VD AR VFDRMP + V
Sbjct: 169 LAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDV 228

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           V+W +M+  Y       E   LF  M   G+ P+  T   VL ACA+     LG+ VH  
Sbjct: 229 VSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGR 288

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           +       +    ++L++MY++ G++  A  +F  M +L++++WTAMISGY  +G   EA
Sbjct: 289 MTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEA 348

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           +  F  +   G RP++VTFV VLSACAHAGLV +G  +F S++ EYG+    +H+ C++D
Sbjct: 349 LRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVID 408

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L  R+GL   A + + + +  KP   +W ++LG C++HKN  L    AE L  +EPENP 
Sbjct: 409 LLSRSGLFERAEEMI-NTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPA 467

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
            YV L+NIYA  G  D VE  R IM  KG+ K    S +EV  + ++F +GDK HP   +
Sbjct: 468 TYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQ 527

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           +Y  L +L  + RE GYV ++   +H++E+E+++  + YHSE+LA+AFG++ T  G  I+
Sbjct: 528 VYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPIK 587

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           + KNLR+C DCH+ IK IS    REIIVRD  RFHHFK GSCSC DYW
Sbjct: 588 VFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 151/311 (48%), Gaps = 17/311 (5%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H H++  G      + + L  +    G +  A+ +F  +P  D   +  ++ R   A
Sbjct: 182 RELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDA 241

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +    + RM+ S I P+ +T++ V+++CA  +   LG+ VH  +  S        +
Sbjct: 242 RRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAE 301

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           +ALV+ Y+K  ++  A +VF  MP   +V+W +MISGY QNG   EA+  F+++   G  
Sbjct: 302 SALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCR 361

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKARE 263
           PD  T V VL+ACA  G +D G  +   I  + G++        +I++ +R G   +A E
Sbjct: 362 PDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEE 421

Query: 264 IFDMMS-ELNVIAWTAMISGYGMHG------YGTEAVELFHRMRAHGVRPNN-VTFVAVL 315
           + + MS + N   W +++ G  +H       +  EA  LF       + P N  T+V + 
Sbjct: 422 MINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEA--LFE------IEPENPATYVTLA 473

Query: 316 SACAHAGLVQE 326
           +  A  GL  E
Sbjct: 474 NIYASVGLFDE 484


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/566 (37%), Positives = 336/566 (59%), Gaps = 33/566 (5%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           R+    +V  + +++GY ++  +L               AQR+F   P  D F +  ++ 
Sbjct: 229 RMPERDEVSWNTMISGYAQNGELLE--------------AQRLFEESPVRDVFTWTAMV- 273

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSN-YTFSAVIKSCAHLSILNLGR----AVHCHVFV 134
               + +  + +L   R +   +   N  +++A+I        ++  R    A+ C   V
Sbjct: 274 ----SGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQN-V 328

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
           S +++       ++  YA++ ++  AR  FDRMP +  ++W ++I+GY Q+G+ +EA+ L
Sbjct: 329 SSWNT-------MITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHL 381

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           F  M+  G   + +T    L+ CA++  ++LG+ VH  +V  GL+    +  +L+ MY +
Sbjct: 382 FVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCK 441

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CGN+  A  +F+ + E  V++W  MI+GY  HG+G EA+ LF  M+  G+ P++VT V V
Sbjct: 442 CGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGV 501

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           LSAC+H GLV +G   F SM Q+YG+    +H+ CM+DL GRAG L++A   +K++  E 
Sbjct: 502 LSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFE- 560

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P  A W A+LGA ++H N +LG + A+ +  +EP+N G YV+LSN+YA +GR   V  +R
Sbjct: 561 PDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMR 620

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE 494
             M  +G+KK  GYS VEV  K + F++GD  HP  + IY +L+EL  + ++ GYV  ++
Sbjct: 621 LRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTK 680

Query: 495 SAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVAT 554
             +H++EEEE+ + L+YHSEKLA+AFG++    G  IR++KNLR+C DCH+A+K IS   
Sbjct: 681 LVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIV 740

Query: 555 NREIIVRDRLRFHHFKRGSCSCLDYW 580
            R II+RD  RFHHF  G CSC DYW
Sbjct: 741 GRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 124/261 (47%), Gaps = 19/261 (7%)

Query: 77  LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
           + I N   N   DS L   R+  S    S+ +++A+I  C       L R     +F   
Sbjct: 54  IAITNHMRNGQCDSAL---RLFNSMPRRSSISWNAMISGCLSNDKFYLAR----QLFEKM 106

Query: 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN 196
              DL     +++   +  N+  AR +FD+MP++ VV+WN+M+SGY QNG+ KEA  +F+
Sbjct: 107 PTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFD 166

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            M       +S +   +LAA  Q G I+  R + E       D  ++    ++  Y +  
Sbjct: 167 EM----PCKNSISWNGMLAAYVQNGRIEDARRLFE----SKADWELISWNCMMGGYVKRN 218

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
            +  AR IFD M E + ++W  MISGY  +G   EA  LF       V     T+ A++S
Sbjct: 219 RLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVS 274

Query: 317 ACAHAGLVQEGHRVFASMRQE 337
                G++ E  RVF  M ++
Sbjct: 275 GYVQNGMLDEARRVFDGMPEK 295



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 42/293 (14%)

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
           D+D+      +  + ++   D A ++F+ MP +S ++WN+MISG   N     A  LF  
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M       D  +   +++ C +  ++   R     +  Q  + +VV   ++++ YA+ G 
Sbjct: 106 M----PTRDLVSWNVMISGCVRYRNLRAAR----LLFDQMPERDVVSWNAMLSGYAQNGY 157

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH-------------------R 298
           V +A+EIFD M   N I+W  M++ Y  +G   +A  LF                    R
Sbjct: 158 VKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKR 217

Query: 299 MR---AHGV-----RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350
            R   A G+       + V++  ++S  A  G + E  R+F     E   +  V     M
Sbjct: 218 NRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF-----EESPVRDVFTWTAM 272

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
           V  + + G+L+EA + V D + EK + + W A++      K  D   E+ E +
Sbjct: 273 VSGYVQNGMLDEARR-VFDGMPEKNSVS-WNAIIAGYVQCKRMDQARELFEAM 323


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/562 (40%), Positives = 341/562 (60%), Gaps = 9/562 (1%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTL--IIRNS 82
            QQ+H   +  G     S+   L+ +  + G ++    IF  + + D   +N++  ++ +S
Sbjct: 504  QQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASS 563

Query: 83   KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
            +A   T+S+  +  M+ S + P+  TF   + +   LS+L LG+ +H  +   G   D  
Sbjct: 564  QAPI-TESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNA 622

Query: 143  VQAALVNFYAKSNNVDVARKVFDRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V  AL++ YAKS +VD   ++F RM  +   ++WNSMISGY  NG  +EA+    LM   
Sbjct: 623  VDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHS 682

Query: 202  GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
                D  T   VL ACA +  ++ G  +H F +   L+ +VV+ ++L++MY++CG +  A
Sbjct: 683  EQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYA 742

Query: 262  REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
             ++F  MS+ N  +W +MISGY  HG G +A+E+F  M+  G  P++VTFV+VLSAC+HA
Sbjct: 743  SKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHA 802

Query: 322  GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
            GLV+ G   F  M ++YG+LP +EH+ C++DL GRAG L++  +++K  +  KP   +W 
Sbjct: 803  GLVERGLDYFELM-EDYGILPRIEHYSCVIDLLGRAGELDKIQEYMKR-MPMKPNTLIWR 860

Query: 382  AMLGACKMHKN---FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
             +L AC+  K+    DLG E +  LL +EP+NP +YV+ S  +A  GR +     R  M 
Sbjct: 861  TVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMK 920

Query: 439  QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
               +KK  G S V +    + F  GD+SHPNT EIY+ L+ L+ + R AGYVP +E  +H
Sbjct: 921  GAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLH 980

Query: 499  ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
            +LEEE +E  LRYHSEKLA+AF L R+S G  IRI+KNLR+C DCH+A ++IS    R+I
Sbjct: 981  DLEEENKEELLRYHSEKLAVAFVLTRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQI 1040

Query: 559  IVRDRLRFHHFKRGSCSCLDYW 580
            I+RD +RFHHFK G CSC DYW
Sbjct: 1041 ILRDSIRFHHFKDGKCSCGDYW 1062



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 179/369 (48%), Gaps = 7/369 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI-- 78
           L  L Q+   ++ +G      + + L+S     G +  A+ I+  +   ++   N LI  
Sbjct: 294 LGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAG 353

Query: 79  -IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
            ++      + +  +  R     N+       SA+ +       L  GR VH HV  +G+
Sbjct: 354 LVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGH 413

Query: 138 D-SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN 196
               + V   LVN YAK   +D A +VF  M  +  ++WN++I+  +QNG+ + A+  + 
Sbjct: 414 IYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYC 473

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
           LMR   + P +   +  L++CA LG +  G+ +H   V  GL ++  ++ +L+ MY  CG
Sbjct: 474 LMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECG 533

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYG-MHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
            +S+  EIF+ MS  +V++W +++          TE+V++F  M   G+ PN VTFV  L
Sbjct: 534 RMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFL 593

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
           +A     +++ G ++ + M + +G+         ++  + ++G ++   +    + G + 
Sbjct: 594 AALTPLSVLELGKQIHSVMLK-HGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRD 652

Query: 376 APAVWTAML 384
           A + W +M+
Sbjct: 653 AIS-WNSMI 660



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 122/269 (45%), Gaps = 25/269 (9%)

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
           ++H  V   G   DL +   LVN YAK   +D AR+VFD MP ++ V+W  +ISG+  +G
Sbjct: 86  SLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSG 145

Query: 187 FAKEAIGLFNLM--RDFGVNPDSTTCVCVLAACAQLGDIDLG--RWVHEFIVGQGLDVNV 242
             ++A  LF  M     G  P S T   VL AC   G   LG    VH  +       N 
Sbjct: 146 LPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNT 205

Query: 243 VLATSLINMYARC--GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
            +  +LI+MY  C  G    A+ +FD     ++I W A++S Y   G       LF  M+
Sbjct: 206 TVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQ 265

Query: 301 AHG----VRPNNVTFVAV-----LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
                  +RP   TF ++     LS+C+   L Q   RV  S     G    +     +V
Sbjct: 266 YDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKS-----GCSSDLYVGSALV 320

Query: 352 DLFGRAGLLNEAYKFVKDV-IGEKPAPAV 379
             F R G+L+EA    KD+ +G K   AV
Sbjct: 321 SAFARHGMLDEA----KDIYLGLKERNAV 345



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 156/342 (45%), Gaps = 17/342 (4%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           +    PH+       + G    P + +H  ++  G      +   L++       +  A+
Sbjct: 62  LSRPHPHADVLLRGRRPGCDASP-ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAAR 120

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN--ISPSNYTFSAVIKSCAH 118
           R+F  +P  ++  +  LI  +  +    D+   +R M+       P+++TF +V+++C  
Sbjct: 121 RVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQD 180

Query: 119 LSILNLGRAVHCHVFVSG--YDSDLHVQAALVNFYAKSN--NVDVARKVFDRMPDKSVVA 174
                LG AV  H  VS   + S+  V  AL++ Y   +     +A++VFD  P + ++ 
Sbjct: 181 SGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLIT 240

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMR--DFGVN--PDSTTCVCVLAACAQLGDIDLGRWVH 230
           WN+++S Y + G A     LF  M+  D G+   P   T   ++ A   L    LG    
Sbjct: 241 WNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITA-TYLSSCSLGLLDQ 299

Query: 231 EF--IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
            F  ++  G   ++ + ++L++ +AR G + +A++I+  + E N +    +I+G     +
Sbjct: 300 LFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQH 359

Query: 289 GTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGHR 329
           G  A E+F  M A      NV T+V +LSA A     ++G R
Sbjct: 360 GEAAAEIF--MGARDSAAVNVDTYVVLLSAIAEFSTAEQGLR 399


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/595 (35%), Positives = 350/595 (58%), Gaps = 36/595 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L   + +HAH++  G  +   +   L+++    G  ++A ++F  +P  D   + +++  
Sbjct: 19  LTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTA 78

Query: 81  NSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
            ++AN S  +L  +  +  S+ + P ++ FSA++K+CA+L  ++ GR VHCH  VS Y +
Sbjct: 79  LNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYAN 138

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL-- 197
           D  V+++LV+ YAK   ++ A+ VFD +  K+ ++W +M+SGY ++G  +EA+ LF +  
Sbjct: 139 DEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILP 198

Query: 198 -----------------------------MRDFGVNP-DSTTCVCVLAACAQLGDIDLGR 227
                                        MR   V+  D      ++ ACA L     GR
Sbjct: 199 VKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGR 258

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            VH  ++  G D  V ++ +LI+MYA+C +V  A++IF  M   +V++WT++I G   HG
Sbjct: 259 QVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHG 318

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
              +A+ L+  M +HGV+PN VTFV ++ AC+H G V++G  +F SM ++YG+ P ++H+
Sbjct: 319 QAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHY 378

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL-SV 406
            C++DL GR+GLL+EA   +   +   P    W A+L ACK      +G+ +A+HL+ S 
Sbjct: 379 TCLLDLLGRSGLLDEAENLIH-TMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSF 437

Query: 407 EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKS 466
           + ++P  Y++LSNIYA A    +V   R  + +  ++K  G+S+VEV ++  +F  G+ S
Sbjct: 438 KLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETS 497

Query: 467 HPNTNEIYQYLDELMGRCR-EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
           HP   +I++ L +L    R   GYVP++   +H+++E+E+E  L +HSE+ A+A+GL++ 
Sbjct: 498 HPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKA 557

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            PG  IRIVKNLR+C DCH  +K IS  T REIIVRD  R+HHFK G CSC D+W
Sbjct: 558 VPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           ++ CA    L   +A+H H+   G      +   LVN Y K      A +VFD MP +  
Sbjct: 10  LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69

Query: 173 VAWNSMISGYEQ-NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH- 230
           +AW S+++   Q N   K      ++    G+ PD      ++ ACA LG ID GR VH 
Sbjct: 70  IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129

Query: 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
            FIV +  +  VV  +SL++MYA+CG ++ A+ +FD +   N I+WTAM+SGY   G   
Sbjct: 130 HFIVSEYANDEVV-KSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKE 188

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           EA+ELF  +       N  ++ A++S    +G   E   VF  MR+E
Sbjct: 189 EALELFRILPV----KNLYSWTALISGFVQSGKGLEAFSVFTEMRRE 231


>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
 gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/572 (38%), Positives = 341/572 (59%), Gaps = 6/572 (1%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCIPS-PD 70
           +L+    +K L+++H+H+I+ G     S+   LL    V   G +++AQ +F    S P 
Sbjct: 11  MLQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPS 70

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS-PSNYTFSAVIKSCAHLSILNLGRAVH 129
           +  +N LI   S ++   +S+LFY RM++S++S P  +TF+  +KSC  +  +     +H
Sbjct: 71  TSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIH 130

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
             V  SG+  D  V  +LV  Y+ + +V++A KVFD MP + +V+WN MI  +   G   
Sbjct: 131 GSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHN 190

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           +A+ ++  M + GV  DS T V +L++CA +  +++G  +H        +  V ++ +LI
Sbjct: 191 QALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALI 250

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           +MYA+CG++  A  +F+ M + +V+ W +MI GYG+HG+G EA+  F +M A GVRPN +
Sbjct: 251 DMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAI 310

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           TF+ +L  C+H GLV+EG   F  M  ++ L P V+H+ CMVDL+GRAG L  + + +  
Sbjct: 311 TFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYA 370

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
               +  P +W  +LG+CK+H+N +LG    + L+ +E  N G YV++++IY+ A     
Sbjct: 371 SSCHED-PVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQA 429

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
              +R ++    L+   G+S +E+  + + F + DK HP +  IY  L E++ R   AGY
Sbjct: 430 FASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGY 489

Query: 490 VPE-SESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
            PE S      L +     +   HSEKLA+A+GLMRT+ G T+RI KNLR+C DCHS  K
Sbjct: 490 KPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTK 549

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           ++S A NREIIVRDR+RFHHF  G CSC DYW
Sbjct: 550 YVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/473 (41%), Positives = 298/473 (63%), Gaps = 1/473 (0%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T +   K+C  L +L+ G+ +H H   +G+DSDLHV + +++ Y K  ++  A  VF+ +
Sbjct: 32  TLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYI 91

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
                VAW SMISG   NG   +A+ +++ MR   V PD  T   ++ A + +  ++ GR
Sbjct: 92  SAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGR 151

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            +H  ++      +  + TSL++MYA+CGN+  A  +F  M+  N+  W AM+ G   HG
Sbjct: 152 QLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHG 211

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
              EAV LF  M++HG+ P+ V+F+ +LSAC+HAGL  E +    SM  +YG+ P +EH+
Sbjct: 212 NAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHY 271

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
            C+VD  GRAGL+ EA K + + +  K + ++  A+LGAC++  + + G  VA  L ++E
Sbjct: 272 SCLVDALGRAGLVQEADKVI-ETMPFKASASINRALLGACRIQGDVEXGKRVAARLFALE 330

Query: 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSH 467
           P +   YV+LSNIYA A R D V   R +M +K +KK  G+S ++V    +LF + D+SH
Sbjct: 331 PFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSH 390

Query: 468 PNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSP 527
           P  + IY  ++E+M   RE GYVP++E  + ++E+EE+E SL YHSEKLA+A+GL+ T  
Sbjct: 391 PQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPA 450

Query: 528 GMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             TIR++KNLR+C DCH+AIK+IS    REI++RD  RFHHF+ G CSC DYW
Sbjct: 451 STTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 503



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 128/245 (52%), Gaps = 1/245 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+HAH I AG+     + + +L +    G +  A  +F  I +PD   + ++I      
Sbjct: 50  KQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDN 109

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
                +L  Y RM  S + P  YTF+ +IK+ + ++ L  GR +H +V      SD  V 
Sbjct: 110 GNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG 169

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            +LV+ YAK  N++ A ++F +M  +++  WN+M+ G  Q+G A+EA+ LF  M+  G+ 
Sbjct: 170 TSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIE 229

Query: 205 PDSTTCVCVLAACAQLG-DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           PD  + + +L+AC+  G   +   ++H      G++  +   + L++   R G V +A +
Sbjct: 230 PDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADK 289

Query: 264 IFDMM 268
           + + M
Sbjct: 290 VIETM 294



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 126/244 (51%), Gaps = 7/244 (2%)

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           M+ GY      K+A+ LF+L+   G   D  T      AC  L  +D G+ +H   +  G
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
            D ++ + + +++MY +CG++  A  +F+ +S  + +AWT+MISG   +G   +A+ ++H
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGR 356
           RMR   V P+  TF  ++ A +    +++G ++ A+ ++ +    P V     +VD++ +
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFV--GTSLVDMYAK 178

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHY 414
            G + +AY+  K +       A+W AML     H N +  V + + + S  +EP+     
Sbjct: 179 CGNIEDAYRLFKKM--NVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFI 236

Query: 415 VMLS 418
            +LS
Sbjct: 237 GILS 240


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 326/578 (56%), Gaps = 36/578 (6%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           RS S    ++SL    G +  A  +F  +       +N +I   ++      +L F+ RM
Sbjct: 227 RSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRM 286

Query: 98  IV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           +  S++ P  +T ++V+ +CA+L +L +G+ +H ++  +G      +  AL++ YAKS +
Sbjct: 287 LTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGS 346

Query: 157 VDVARK---------------------------------VFDRMPDKSVVAWNSMISGYE 183
           V+ AR+                                 VFD M ++ V+AW +MI GYE
Sbjct: 347 VETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYE 406

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG   EA+ LF  M   G  P+S T   VL+ACA L  +  G+ +H   +    + +V 
Sbjct: 407 QNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVS 466

Query: 244 LATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           ++ ++I +YAR G+V  AR +FD +      + WT+MI     HG G +A+ LF  M   
Sbjct: 467 VSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRV 526

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV+P+ VT++ V SAC HAG + +G R +  M  E+G++P + H+ CMVDL  RAGLL E
Sbjct: 527 GVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTE 586

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A++F++  +   P   VW ++L AC++ KN DL    AE LLS++P+N G Y  L+N+Y+
Sbjct: 587 AHEFIQR-MPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYS 645

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             GR +    +  +   K +KK  G+S   V  K ++F   D  HP  + I +   E+  
Sbjct: 646 ACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWE 705

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             ++AG+VP+  S +H++++E +E  L  HSEKLA+AFGL+ T    T+RI+KNLR+C D
Sbjct: 706 EIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCND 765

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+AIKFIS   +REIIVRD  RFHHF+ G CSC DYW
Sbjct: 766 CHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/430 (27%), Positives = 197/430 (45%), Gaps = 75/430 (17%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LLS+   +G +  A+ +F  +P  D+  +  +++  ++A    D++  +  M+   ++PS
Sbjct: 103 LLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPS 162

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            +  + V+ SCA      +GR VH  V   G  S + V  +++  Y K  + + AR VF+
Sbjct: 163 QFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFE 222

Query: 166 RMPDKSVVAWNSMIS-------------------------------GYEQNGFAKEAIGL 194
           RM  +S  +WN+M+S                               GY QNG    A+  
Sbjct: 223 RMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKF 282

Query: 195 FN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL--------------- 238
           F+ ++    + PD  T   VL+ACA L  + +G+ +H +I+  G+               
Sbjct: 283 FSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYA 342

Query: 239 ------------------DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
                             D+NV+  T+L+  Y + G+  +ARE+FD+M+  +VIAWTAMI
Sbjct: 343 KSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMI 402

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH----RVFASMRQ 336
            GY  +G   EA+ELF  M   G  PN+ T  AVLSACA    +  G     R   S+++
Sbjct: 403 VGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQE 462

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
           +      V     ++ ++ R+G +  A + V D I  +     WT+M+ A   H   +  
Sbjct: 463 Q-----SVSVSNAIITVYARSGSVPLARR-VFDQICWRKETVTWTSMIVALAQHGLGEQA 516

Query: 397 VEVAEHLLSV 406
           + + E +L V
Sbjct: 517 IVLFEEMLRV 526



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 32/217 (14%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           +L++ YAKS  +  AR VF +MP++  V+W  M+ G  + G   +A+  F  M   G+ P
Sbjct: 102 SLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAP 161

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
                  VL++CA      +GR VH F++  GL   V +A S++ MY +CG+   AR +F
Sbjct: 162 SQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVF 221

Query: 266 DMMS-------------------------------ELNVIAWTAMISGYGMHGYGTEAVE 294
           + M                                E ++++W A+I+GY  +G    A++
Sbjct: 222 ERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALK 281

Query: 295 LFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            F RM  A  + P+  T  +VLSACA+  +++ G ++
Sbjct: 282 FFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQM 318



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           N     SL++MYA+ G ++ AR +F  M E + ++WT M+ G    G   +AV+ F  M 
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G+ P+      VLS+CA       G +V  S   + GL   V     ++ ++G+ G  
Sbjct: 156 GEGLAPSQFMLTNVLSSCAATEARGIGRKVH-SFVIKLGLSSCVPVANSVLYMYGKCGDA 214

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
             A    + +  +  + + W AM+         DL + + E++
Sbjct: 215 ETARAVFERM--KVRSESSWNAMVSLYTHQGRMDLALSMFENM 255



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/326 (19%), Positives = 130/326 (39%), Gaps = 60/326 (18%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+S    A+L A   L  L   +Q+H   I +   +S S+   ++++   +G +  A+R
Sbjct: 427 EPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARR 486

Query: 62  IFFCI-PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           +F  I    ++  + ++I+  ++      +++ +  M+   + P   T+  V  +C H  
Sbjct: 487 VFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAG 546

Query: 121 ILNLGRAVHCHVFVS-GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
            ++ G+  +  +    G   ++   A +V+  A++  +  A +   RMP           
Sbjct: 547 FIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMP----------- 595

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
                                  V PD+     +LAAC    + DL     E ++    D
Sbjct: 596 -----------------------VAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPD 632

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNV-----IAWTAMISGYGMHGYGTE--- 291
            N    ++L N+Y+ CG  + A  I+ +  +  V      +WT + S   +H +G +   
Sbjct: 633 -NSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQS--KVHVFGADDVL 689

Query: 292 ----------AVELFHRMRAHGVRPN 307
                     A E++  ++  G  P+
Sbjct: 690 HPQRDAICKKAAEMWEEIKKAGFVPD 715


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/535 (37%), Positives = 322/535 (60%), Gaps = 9/535 (1%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           ++S     G ++ A+R+F   P+ D F +  ++    +     ++  F+  M   N    
Sbjct: 241 MISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKN---- 296

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
             +++A+I        +++ R     +F S    ++     ++  Y +  ++  ARK FD
Sbjct: 297 EVSYNAMIAGYVQTKKMDIAR----ELFESMPCRNISSWNTMITGYGQIGDIAQARKFFD 352

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP +  V+W ++I+GY Q+G  +EA+ +F  ++  G + +  T  C L+ CA +  ++L
Sbjct: 353 MMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALEL 412

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ +H   V  G      +  +L+ MY +CG++ +A + F+ + E +V++W  M++GY  
Sbjct: 413 GKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYAR 472

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           HG+G +A+ +F  M+  GV+P+ +T V VLSAC+H GL+  G   F SM ++YG++P  +
Sbjct: 473 HGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSK 532

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ CM+DL GRAG L EA   ++++  + P  A W A+LGA ++H N +LG + AE +  
Sbjct: 533 HYTCMIDLLGRAGRLEEAQDLIRNMPFQ-PGAASWGALLGASRIHGNTELGEKAAEMVFK 591

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           +EP+N G YV+LSN+YA +GR    + +R+ M   G++K  GYS VEV  K + FS+GD 
Sbjct: 592 MEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDC 651

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
           SHP    IY YL+EL  + RE GYV  ++  +H++EEEE+E+ L+YHSEKLA+AFG++  
Sbjct: 652 SHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTI 711

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             G  IR++KNLR+C DCHSAIK IS    R II+RD  RFHHF  G CSC DYW
Sbjct: 712 PGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 157/350 (44%), Gaps = 54/350 (15%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP--SNYTFSAVIKSCAHLSILN 123
           +  PD   +N  I  + + N   DS L      V N  P  S+ +++A+I      S  N
Sbjct: 44  VKDPDILKWNKAISTHMR-NGHCDSALH-----VFNTMPRRSSVSYNAMISGYLRNSKFN 97

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
           L R    ++F    + DL     ++  Y ++  +  AR++FD MP+K VV+WNS++SGY 
Sbjct: 98  LAR----NLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYA 153

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG-------------DIDLGRW-- 228
           QNG+  EA  +F+ M +     +S +   +LAA    G             D DL  W  
Sbjct: 154 QNGYVDEAREVFDNMPE----KNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNC 209

Query: 229 -VHEFIVGQGLD-----------VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
            +  F+  + L             + +   ++I+ YA+ G +S+AR +FD     +V  W
Sbjct: 210 LMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTW 269

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           TAM+SGY  +G   EA   F  M       N V++ A+++       +     +F SM  
Sbjct: 270 TAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMDIARELFESMP- 324

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
                  +     M+  +G+ G + +A KF  D++ ++   + W A++  
Sbjct: 325 ----CRNISSWNTMITGYGQIGDIAQARKFF-DMMPQRDCVS-WAAIIAG 368



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 107/219 (48%), Gaps = 19/219 (8%)

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           R+ D  ++ WN  IS + +NG    A+ +FN M        S +   +++   +    +L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTM----PRRSSVSYNAMISGYLRNSKFNL 98

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
            R     +  Q  + ++     ++  Y R   +  AR +FD+M E +V++W +++SGY  
Sbjct: 99  AR----NLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           +GY  EA E+F  M       N++++  +L+A  H G ++E   +F S + ++ L+    
Sbjct: 155 NGYVDEAREVFDNM----PEKNSISWNGLLAAYVHNGRIEEACLLFES-KSDWDLIS--- 206

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
              C++  F R   L +A +++ D +  + A + W  M+
Sbjct: 207 -WNCLMGGFVRKKKLGDA-RWLFDKMPVRDAIS-WNTMI 242



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 45/101 (44%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H   +  GYG    +   LL++    G I  A   F  I   D   +NT++   ++ 
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARH 473

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
            F   +L  +  M  + + P   T   V+ +C+H  +L+ G
Sbjct: 474 GFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRG 514


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/529 (40%), Positives = 336/529 (63%), Gaps = 18/529 (3%)

Query: 59  AQRIFFCIPSPDSFLFNTL----IIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
           A+ +F  +P  +   +  L    + R S+ N     ++ + +M+   I P++ T+S+++K
Sbjct: 312 AREVFNRMPKHNVMAWTALLSGYVQRGSQDN---QVMILFCKMLNEGIRPNHITYSSMLK 368

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQA-ALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           +CA+L   + GR +H H   S   +DL+V   ALV+ YA+S +++ AR  FD++ +K++V
Sbjct: 369 ACANLGDQDSGRQIHTHCVKSNL-ADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMV 427

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           +++  + G  ++   ++    + + R + G++  + T   +++A A +G +  G+ +H  
Sbjct: 428 SFSGNLDGDGRSNTYQD----YQIERMELGIS--TFTFGSLISAAASVGMLTKGQRLHAL 481

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
            +  G   +  +  SL++MY+RCG +  A ++FD M++ NVI+WT+MISG   HGY   A
Sbjct: 482 SLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARA 541

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           +ELFH M A GV+PN+VT++AVLSAC+HAGLV+EG   F  M++ +GL+P +EH+ CMVD
Sbjct: 542 LELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVD 601

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L GR+GL+ +A  F+ ++  +  A  VW  +LGACK H N D+G   A H++ +EP++P 
Sbjct: 602 LLGRSGLVEDALDFINEMPCQVDA-LVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPA 660

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
            YV+LSN+YA AG  D+V  +R++M  K L K  G S + VD   + F  GD SHP   E
Sbjct: 661 PYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEE 720

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR-TSPGMTI 531
           IY  L+ L+   +  GYVP++   +H++ +E +E  L  HSEK+A+AFGL+  TS    I
Sbjct: 721 IYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGLISCTSATKPI 780

Query: 532 RIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           RI KNLR+CVDCHSA+K++S AT REII+RD  RFH  K G CSC +YW
Sbjct: 781 RIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 162/293 (55%), Gaps = 8/293 (2%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSP--DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           LL+L      +  A+ +F  +P    D   +  +    S+     ++L  +   +   + 
Sbjct: 90  LLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFGETLEEGLL 149

Query: 104 PSNYTFSAVIKSCAHLSILNL-GRAVHCHVFVSGY-DSDLHVQAALVNFYAKSNNVDVAR 161
           P+ +T  A  ++C    + +L G AV   VF  G+  +D+ V  AL++ +AK+ ++   R
Sbjct: 150 PNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMR 209

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           +VFD + +++VV W  +I+ Y Q+G++ EA+ LF  M + G  PD  T   +L+AC +LG
Sbjct: 210 RVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELG 269

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN---VSKAREIFDMMSELNVIAWTA 278
              LG+ +H   +  GL+ +  ++  L++MYA+  N   +  ARE+F+ M + NV+AWTA
Sbjct: 270 SFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTA 329

Query: 279 MISGYGMHG-YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
           ++SGY   G    + + LF +M   G+RPN++T+ ++L ACA+ G    G ++
Sbjct: 330 LLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQI 382



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           Q++HA  + AG+G  R++   L+S+    G++  A ++F  +   +   + ++I   +K 
Sbjct: 476 QRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKH 535

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG----RAVHCHVFVSGYDSD 140
            ++  +L  +  MI + + P++ T+ AV+ +C+H  ++  G    R +  H    G    
Sbjct: 536 GYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKH---HGLIPR 592

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDK-SVVAWNSMI 179
           +   A +V+   +S  V+ A    + MP +   + W +++
Sbjct: 593 MEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLL 632


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/535 (37%), Positives = 322/535 (60%), Gaps = 9/535 (1%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           ++S     G ++ A+R+F   P+ D F +  ++    +     ++  F+  M   N    
Sbjct: 241 MISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKN---- 296

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
             +++A+I        +++ R     +F S    ++     ++  Y +  ++  ARK FD
Sbjct: 297 EVSYNAMIAGYVQTKKMDIAR----ELFESMPCRNISSWNTMITGYGQIGDIAQARKFFD 352

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP +  V+W ++I+GY Q+G  +EA+ +F  ++  G + +  T  C L+ CA +  ++L
Sbjct: 353 MMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALEL 412

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ +H   V  G      +  +L+ MY +CG++ +A + F+ + E +V++W  M++GY  
Sbjct: 413 GKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYAR 472

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           HG+G +A+ +F  M+  GV+P+ +T V VLSAC+H GL+  G   F SM ++YG++P  +
Sbjct: 473 HGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSK 532

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ CM+DL GRAG L EA   +++ +  +P  A W A+LGA ++H N +LG + AE +  
Sbjct: 533 HYTCMIDLLGRAGRLEEAQDLIRN-MPFQPGAASWGALLGASRIHGNTELGEKAAEMVFK 591

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           +EP+N G YV+LSN+YA +GR    + +R+ M   G++K  GYS VEV  K + FS+GD 
Sbjct: 592 MEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDC 651

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
           SHP    IY YL+EL  + RE GYV  ++  +H++EEEE+E+ L+YHSEKLA+AFG++  
Sbjct: 652 SHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTI 711

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             G  IR++KNLR+C DCHSAIK IS    R II+RD  RFHHF  G CSC DYW
Sbjct: 712 PGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 120/263 (45%), Gaps = 60/263 (22%)

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           + GL+  G   F  M +EY + P  +H+ CM+DL GR   L E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG---------------- 819

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
             A+LGA ++H N +LG + A+    + P+N G                 +  +R++   
Sbjct: 820 --ALLGASRIHGNTELGEKAAQMFFKMGPQNSG-----------------ISKMRDV--- 857

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE-AGYVPESESAMH 498
            G++K  GYS  EV  K + FS+G                 + R RE  G++ E +  M 
Sbjct: 858 -GVQKVPGYSWFEVQNKIHTFSVG---------------LFLSRERENIGFLEELDLKMR 901

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKN-LRMCVDCHSAIKFISVATNRE 557
           E EEE+   +L+Y SE LA A G++    G   R++K  + +C DC SAIK +S    R 
Sbjct: 902 EREEEKER-TLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRL 960

Query: 558 IIVRDRLRFHHFKRGSCSCLDYW 580
           I +RD    H F    CSC +YW
Sbjct: 961 ITLRDS---HRFNESICSCGEYW 980



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 157/350 (44%), Gaps = 54/350 (15%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP--SNYTFSAVIKSCAHLSILN 123
           +  PD   +N  I  + + N   DS L      V N  P  S+ +++A+I      S  N
Sbjct: 44  VKDPDILKWNKAISTHMR-NGHCDSALH-----VFNTMPRRSSVSYNAMISGYLRNSKFN 97

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
           L R    ++F    + DL     ++  Y ++  +  AR++FD MP+K VV+WNS++SGY 
Sbjct: 98  LAR----NLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYA 153

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG-------------DIDLGRW-- 228
           QNG+  EA  +F+ M +     +S +   +LAA    G             D DL  W  
Sbjct: 154 QNGYVDEAREVFDNMPE----KNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNC 209

Query: 229 -VHEFIVGQGLD-----------VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
            +  F+  + L             + +   ++I+ YA+ G +S+AR +FD     +V  W
Sbjct: 210 LMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTW 269

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           TAM+SGY  +G   EA   F  M       N V++ A+++       +     +F SM  
Sbjct: 270 TAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMDIARELFESMP- 324

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
                  +     M+  +G+ G + +A KF  D++ ++   + W A++  
Sbjct: 325 ----CRNISSWNTMITGYGQIGDIAQARKFF-DMMPQRDCVS-WAAIIAG 368



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 109/220 (49%), Gaps = 21/220 (9%)

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           R+ D  ++ WN  IS + +NG    A+ +FN M        S +   +++   +    +L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTM----PRRSSVSYNAMISGYLRNSKFNL 98

Query: 226 GRWVHEFIVGQGL-DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
            R + + +  + L   NV+L       Y R   +  AR +FD+M E +V++W +++SGY 
Sbjct: 99  ARNLFDQMPERDLFSWNVMLTG-----YVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYA 153

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
            +GY  EA E+F  M       N++++  +L+A  H G ++E   +F S + ++ L+   
Sbjct: 154 QNGYVDEAREVFDNM----PEKNSISWNGLLAAYVHNGRIEEACLLFES-KSDWDLIS-- 206

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
               C++  F R   L +A +++ D +  + A + W  M+
Sbjct: 207 --WNCLMGGFVRKKKLGDA-RWLFDKMPVRDAIS-WNTMI 242



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 94/249 (37%), Gaps = 34/249 (13%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H   +  GYG    +   LL++    G I  A   F  I   D   +NT++   ++ 
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARH 473

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            F   +L  +  M  + + P   T   V+ +C+H  +L+ G                   
Sbjct: 474 GFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEY---------------- 517

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
                FY+ + +  V       +P      +  MI    + G  +EA    +L+R+    
Sbjct: 518 -----FYSMTKDYGV-------IPTSK--HYTCMIDLLGRAGRLEEAQ---DLIRNMPFQ 560

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P + +   +L A    G+ +LG    E +       N  +   L N+YA  G    A ++
Sbjct: 561 PGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQ-NSGMYVLLSNLYAASGRWVDADKM 619

Query: 265 FDMMSELNV 273
              M ++ V
Sbjct: 620 RSKMRDIGV 628


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/555 (37%), Positives = 328/555 (59%), Gaps = 4/555 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + +H   + A +         LL +    G +  A  +F  +       + ++I    + 
Sbjct: 316 RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVRE 375

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
              +D++  +  M    + P  YT ++++ +CA  S L+ GR VH +V  +G  S+L V 
Sbjct: 376 GLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVT 435

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGV 203
            AL+N YAK  +V+ AR VF ++P K +V+WN+MI GY QN    EA+ LF ++ + F  
Sbjct: 436 NALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQF-- 493

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            PD  T  CVL ACA L  +D GR +H  I+ +G   ++ +A +L++MYA+CG +  A+ 
Sbjct: 494 KPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQL 553

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +FDM+ + ++I+WT MI+GYGMHG+G EA+  F+ MR  G+ P+  +F A+L+AC+H+GL
Sbjct: 554 LFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGL 613

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           + EG + F SMR E G+ P +EH+ C+VDL  R G L++AYKF++  +  KP   +W  +
Sbjct: 614 LNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIES-MPIKPDTTIWGVL 672

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           L  C++H +  L  +VAEH+  +EP+N  +YV+L+N+YA A + + V+ +R  M ++G K
Sbjct: 673 LSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFK 732

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           ++ G S +EV  K  +F  G+  HP   +I   L +L  + +   Y       +   ++ 
Sbjct: 733 QNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDM 792

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
           E+E     HSEK A+AFG++   PG T+R+ KN R+C DCH   KF+S  T  EI++RD 
Sbjct: 793 EKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDS 852

Query: 564 LRFHHFKRGSCSCLD 578
            RFHHFK G CSC D
Sbjct: 853 NRFHHFKDGLCSCRD 867



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 205/382 (53%), Gaps = 10/382 (2%)

Query: 10  AYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           +Y ++L+     K L+   +VH+ +I  G     ++  KL+ +  + G +   ++IF  I
Sbjct: 96  SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKI 155

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
            +   FL+N L+   +K     +S+  +++M    +  + YTF+ V+K  A L  +   +
Sbjct: 156 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 215

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            VH +V   G+ S+  V  +L+  Y K   V+ A  +FD + +  VV+WNSMI+G   NG
Sbjct: 216 RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNG 275

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
           F+   + +F  M   GV  D TT V VL ACA +G++ LGR +H F V       VV + 
Sbjct: 276 FSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSN 335

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           +L++MY++CGN++ A E+F  M +  +++WT++I+ Y   G  ++A+ LF  M++ GVRP
Sbjct: 336 TLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRP 395

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           +  T  +++ ACA +  + +G  V + + +  G+   +     +++++ + G + EA   
Sbjct: 396 DIYTVTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEA--- 451

Query: 367 VKDVIGEKPAPAV--WTAMLGA 386
            + V  + P   +  W  M+G 
Sbjct: 452 -RLVFSKIPVKDIVSWNTMIGG 472


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/552 (37%), Positives = 335/552 (60%), Gaps = 3/552 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H H++  G      +   L+++    G +  AQ +F  +   D   +N++I    + N 
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND 303

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY-DSDLHVQA 145
            + +L F++ M +  I P   T  ++    + LS   + R++   V    + D D+ +  
Sbjct: 304 PSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGN 363

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVN 204
           ALVN YAK   ++ A  VFD++P K  ++WN++++GY QNG A EAI  +N+M +     
Sbjct: 364 ALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTI 423

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T V ++ A + +G +  G  +H  ++   L ++V +AT LI++Y +CG +  A  +
Sbjct: 424 PNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSL 483

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  +     + W A+I+  G+HG G EA++LF  M A  V+ +++TFV++LSAC+H+GLV
Sbjct: 484 FYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLV 543

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG + F  M++EYG+ P ++H+ CMVDL GRAG L +AY+ V++ +  +P  ++W A+L
Sbjct: 544 DEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRN-MPIQPDASIWGALL 602

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            ACK++ N +LG   ++ LL V+ EN G+YV+LSNIYA   + + V  VR++   +GL+K
Sbjct: 603 SACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRK 662

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G+S+V V  K  +F  G+++HP   EIY+ L  L  + +  GYVP+      ++EE+E
Sbjct: 663 TPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDE 722

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E  L  HSE+LA+AFG++ T P   IRI KNLR+C DCH+A K+IS  + REI+VRD  
Sbjct: 723 KEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSN 782

Query: 565 RFHHFKRGSCSC 576
           RFHHFK G CSC
Sbjct: 783 RFHHFKDGICSC 794



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 228/451 (50%), Gaps = 12/451 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           +P    +  ILKA   L   ++VH  +   G+     +   L+ L    G +  A ++F 
Sbjct: 121 RPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFV 180

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            +P  D   +N +I    +   +  +L    RM    +     T ++++  CA    +  
Sbjct: 181 DMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVIN 240

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G  +H HV   G DSD+ V  AL+N Y+K   +  A+ VFD+M  + +V+WNS+I+ YEQ
Sbjct: 241 GVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQ 300

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV-GQGLDVNVV 243
           N     A+  F  M+  G+ PD  T V + +  +QL D  + R +  F++  + LD +VV
Sbjct: 301 NNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVV 360

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM-RAH 302
           +  +L+NMYA+ G ++ A  +FD +   + I+W  +++GY  +G  +EA++ ++ M    
Sbjct: 361 IGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECR 420

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
              PN  T+V+++ A +H G +Q+G ++ A + +   L   V    C++DL+G+ G L +
Sbjct: 421 DTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN-SLYLDVFVATCLIDLYGKCGRLED 479

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A     ++  +   P  W A++ +  +H   +  +++ + +L+ E     H   +S + A
Sbjct: 480 AMSLFYEIPRDTSVP--WNAIIASLGIHGRGEEALQLFKDMLA-ERVKADHITFVSLLSA 536

Query: 423 L--AGRMDRVEVVRNIMIQK-GLK---KHVG 447
              +G +D  +   +IM ++ G+K   KH G
Sbjct: 537 CSHSGLVDEGQKCFDIMQKEYGIKPSLKHYG 567



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 195/358 (54%), Gaps = 7/358 (1%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           + A+  +   +   +++HA L+V G  ++  + TKL++L    G I+ ++  F  I   +
Sbjct: 25  FNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKN 84

Query: 71  SFLFNTLI---IRNSKANFSTDSL-LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
            F +N++I   +R  K + + + +   +      ++ P  YTF  ++K+C  L     G+
Sbjct: 85  IFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GK 141

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            VHC VF  G++ D+ V A+LV+ Y++   +DVA KVF  MP K V +WN+MISG+ QNG
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
            A  A+G+ N M+  GV  D+ T   +L  CAQ  D+  G  +H  ++  GLD +V ++ 
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSN 261

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           +LINMY++ G +  A+ +FD M   ++++W ++I+ Y  +   + A+  F  M+  G+RP
Sbjct: 262 ALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRP 321

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
           + +T V++ S  +     +    +   + +   L   V     +V+++ + G +N A+
Sbjct: 322 DLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAH 379


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/601 (35%), Positives = 331/601 (55%), Gaps = 32/601 (5%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           +  + +A   L+PL+Q+HA    +G    R     L+    D G +T A+ +F  IP  +
Sbjct: 109 FSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRN 168

Query: 71  SFLFNTLI---IRN----------------------------SKANFSTDSLLFYRRMIV 99
              +N L    I+N                            +   F  +SL F+  M  
Sbjct: 169 VMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRR 228

Query: 100 SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV 159
             + P  +   +V + CA L  +  GR VH +V  SG D D+ V ++L + Y +   +  
Sbjct: 229 EGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQE 288

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
              V   +P  S+V+ N++I+G  QNG ++ A+  F +MR  GV  D  T V  +++C+ 
Sbjct: 289 GEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSD 348

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           L  +  G+ +H  ++  G+D  V + T L++MY+RCG +  +  +F      +    +AM
Sbjct: 349 LAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAM 408

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           IS YG HG+G +A+ELF +M   G  P++VTF+A+L AC+H+GL +EG   F  M + YG
Sbjct: 409 ISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYG 468

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           + P V+H+ C+VDL GR+G L+EA   +   +   P   +W  +L ACK  KNFD+   +
Sbjct: 469 MQPSVKHYTCVVDLLGRSGCLDEAEALILS-MPLTPDGVIWKTLLSACKTQKNFDMAERI 527

Query: 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYL 459
           A+ ++ ++P +   YV+LSNI A + R   V  VR  M    ++K  G S VE+    + 
Sbjct: 528 AKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQ 587

Query: 460 FSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALA 519
           F  GD+SHP   EI + L+E+M + R+ GY P+    +H++E+EE+E SL +HSEKLA+A
Sbjct: 588 FCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIA 647

Query: 520 FGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           F  +    G+ IR++KNLR+C DCH AIK +S  T REI+VRD  RFHHFK G CSC DY
Sbjct: 648 FAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDY 707

Query: 580 W 580
           W
Sbjct: 708 W 708


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/601 (35%), Positives = 331/601 (55%), Gaps = 32/601 (5%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           +  + +A   L+PL+Q+HA    +G    R     L+    D G +T A+ +F  IP  +
Sbjct: 47  FSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRN 106

Query: 71  SFLFNTLI---IRN----------------------------SKANFSTDSLLFYRRMIV 99
              +N L    I+N                            +   F  +SL F+  M  
Sbjct: 107 VMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRR 166

Query: 100 SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV 159
             + P  +   +V + CA L  +  GR VH +V  SG D D+ V ++L + Y +   +  
Sbjct: 167 EGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQE 226

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
              V   +P  S+V+ N++I+G  QNG ++ A+  F +MR  GV  D  T V  +++C+ 
Sbjct: 227 GEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSD 286

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           L  +  G+ +H  ++  G+D  V + T L++MY+RCG +  +  +F      +    +AM
Sbjct: 287 LAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAM 346

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           IS YG HG+G +A+ELF +M   G  P++VTF+A+L AC+H+GL +EG   F  M + YG
Sbjct: 347 ISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYG 406

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           + P V+H+ C+VDL GR+G L+EA   +   +   P   +W  +L ACK  KNFD+   +
Sbjct: 407 MQPSVKHYTCVVDLLGRSGCLDEAEALILS-MPLTPDGVIWKTLLSACKTQKNFDMAERI 465

Query: 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYL 459
           A+ ++ ++P +   YV+LSNI A + R   V  VR  M    ++K  G S VE+    + 
Sbjct: 466 AKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQ 525

Query: 460 FSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALA 519
           F  GD+SHP   EI + L+E+M + R+ GY P+    +H++E+EE+E SL +HSEKLA+A
Sbjct: 526 FCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIA 585

Query: 520 FGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           F  +    G+ IR++KNLR+C DCH AIK +S  T REI+VRD  RFHHFK G CSC DY
Sbjct: 586 FAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDY 645

Query: 580 W 580
           W
Sbjct: 646 W 646


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/452 (44%), Positives = 300/452 (66%), Gaps = 1/452 (0%)

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           ++ A L  +  G  VH     +G++S + VQ  LV+ YA   + + A K+F+ M ++++V
Sbjct: 3   RAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLV 62

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
            WNS+I+GY  NG   EA+ LF  M   GV PD  T V +L+ACA+LG + LGR  H ++
Sbjct: 63  TWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYM 122

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           V  GLD N+    +L+++YA+CG++ +A ++FD M E +V++WT++I G  ++G+G EA+
Sbjct: 123 VKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEAL 182

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           ELF  +   G+ P+ +TFV VL AC+H G+V EG   F  M++EYG++P +EH+ CMVDL
Sbjct: 183 ELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDL 242

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GRAGL+ +A++F+++ +  +P   VW  +LGAC +H +  LG      LL +EP++ G 
Sbjct: 243 LGRAGLVKQAHEFIQN-MPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGD 301

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+LSN+YA   R   V  VR  M+++G+KK  G+S VE+  + + F MGD+SHP T EI
Sbjct: 302 YVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEI 361

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           Y  L E+    +  GYVP   + + ++EEEE+E +L YHSEK+A+AF L+ T+ G+ IR+
Sbjct: 362 YVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRV 421

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
           VKNLR+C DCH AIK IS   +REI+VRDR R
Sbjct: 422 VKNLRVCADCHLAIKLISKVFDREIVVRDRSR 453



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 134/270 (49%), Gaps = 10/270 (3%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           ++VH+  I  G+     +   L+ +    G    A ++F  +   +   +N++I   +  
Sbjct: 15  EKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALN 74

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++L  +R M +  + P  +T  +++ +CA L  L LGR  H ++   G D +LH  
Sbjct: 75  GRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAG 134

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL++ YAK  ++  A KVFD M +KSVV+W S+I G   NGF KEA+ LF  +   G+ 
Sbjct: 135 NALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLM 194

Query: 205 PDSTTCVCVLAACAQLGDIDLG-----RWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
           P   T V VL AC+  G +D G     R   E+    G+   +     ++++  R G V 
Sbjct: 195 PSEITFVGVLYACSHCGMVDEGFDYFKRMKEEY----GIVPKIEHYGCMVDLLGRAGLVK 250

Query: 260 KARE-IFDMMSELNVIAWTAMISGYGMHGY 288
           +A E I +M  + N + W  ++    +HG+
Sbjct: 251 QAHEFIQNMPMQPNAVVWRTLLGACTIHGH 280


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/524 (40%), Positives = 314/524 (59%), Gaps = 14/524 (2%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   +  +I   ++     ++L  +R+M      P+  T  +++ +C  +  L  G+  H
Sbjct: 464 DVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETH 523

Query: 130 CHV--FVSGYD------SDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNSMI 179
           C+   F+   D       DL V   L++ YAK  + +VARK+FD +   D+ VV W  MI
Sbjct: 524 CYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMI 583

Query: 180 SGYEQNGFAKEAIGLFNLM--RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
            GY Q+G A  A+ LF+ M   D  + P+  T  C L ACA+L  +  GR VH +++   
Sbjct: 584 GGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNF 643

Query: 238 L-DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
              V + +A  LI+MY++ G+V  A+ +FD M + N ++WT++++GYGMHG G +A+ +F
Sbjct: 644 YGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVF 703

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
             MR   + P+ +TF+ VL AC+H+G+V  G   F  M +++G+ PG EH+ CMVDL+GR
Sbjct: 704 DEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGR 763

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
           AG L EA K + ++  E P P VW A+L AC++H N +LG   A  LL +E  N G Y +
Sbjct: 764 AGRLGEAMKLINEMPME-PTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTL 822

Query: 417 LSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQY 476
           LSNIYA A R   V  +R  M + G+KK  G S ++  +    F +GD+SHP + +IY+ 
Sbjct: 823 LSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYET 882

Query: 477 LDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKN 536
           L +L+ R +  GYVP++  A+H++++EE+   L  HSEKLALA+G++   P   IRI KN
Sbjct: 883 LADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTLHPRAPIRITKN 942

Query: 537 LRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           LR+C DCHSAI +IS     EII+RD  RFHHFK GSCSC  YW
Sbjct: 943 LRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 192/424 (45%), Gaps = 55/424 (12%)

Query: 67  PSPDS-FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           PSP S F +N LI R        D    YR+M     +P +YTF  V K+CA+LS L+LG
Sbjct: 219 PSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLG 278

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV---VAWNSMISGY 182
            ++H  V  SG+ S++ V  A+V+ Y K   +  A  +FD +  + +   V+WNS++S Y
Sbjct: 279 ASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAY 338

Query: 183 EQNGFAKEAIGLFNLMRDFGV-NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
                A  A+ LF+ M    + +PD  + V +L ACA L     GR VH F +  GL  +
Sbjct: 339 MWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDD 398

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM---------------------- 279
           V +  ++++MYA+CG + +A ++F  M   +V++W AM                      
Sbjct: 399 VFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTE 458

Query: 280 -------------ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
                        I+GY   G G EA+++F +M   G RPN VT V++LSAC   G +  
Sbjct: 459 ENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLH 518

Query: 327 GHRV----FASMRQEYGLLPGVEHHVC---MVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           G          +    G  PG +       ++D++ +      A K    V  +      
Sbjct: 519 GKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVT 578

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALA-------GRMDRVE 431
           WT M+G    H + +  +++   +  ++    P  + +   + A A       GR     
Sbjct: 579 WTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAY 638

Query: 432 VVRN 435
           V+RN
Sbjct: 639 VLRN 642



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 139/307 (45%), Gaps = 32/307 (10%)

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNL--------GRAVHCHVFVSGYDSDLHVQAALVN 149
           I S +  S +T + ++ SCA + I  L         + +H    + G     H+   L+ 
Sbjct: 143 IKSKLLQSQFTNTRLL-SCATIPITALKECNSLAHAKLLHQQSIMQGLL--FHLATNLIG 199

Query: 150 FYAKSNNVDVARKVFDRMP--DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
            Y  SN+   A  + +R+P    SV  WN +I      G  ++   L+  M+  G  PD 
Sbjct: 200 TYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDH 259

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
            T   V  ACA L  + LG  +H  +   G   NV +  ++++MY +CG +  A  +FD 
Sbjct: 260 YTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDD 319

Query: 268 MSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRA-HGVRPNNVTFVAVLSACAHAGL 323
           +      ++++W +++S Y        A+ LFH+M   H + P+ ++ V +L ACA    
Sbjct: 320 LCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAA 379

Query: 324 VQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEKPAP 377
              G +V   S+R   GL+  V     +VD++ + G + EA K       KDV+      
Sbjct: 380 SLRGRQVHGFSIRS--GLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVS----- 432

Query: 378 AVWTAML 384
             W AM+
Sbjct: 433 --WNAMV 437



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 6/186 (3%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTK-LLSLVCDAGFIT 57
           K+ +P+       L A  RL  L+   QVHA+++   YG     +   L+ +   +G + 
Sbjct: 607 KSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVD 666

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            AQ +F  +P  ++  + +L+          D+L  +  M    + P   TF  V+ +C+
Sbjct: 667 TAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACS 726

Query: 118 HLSILNLGRAVHCHVFVS-GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAW 175
           H  +++ G      +    G D      A +V+ + ++  +  A K+ + MP + + V W
Sbjct: 727 HSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVW 786

Query: 176 NSMISG 181
            +++S 
Sbjct: 787 VALLSA 792


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/619 (35%), Positives = 346/619 (55%), Gaps = 47/619 (7%)

Query: 5   QPHSPAYEAILK--AGPRLKPL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+S  Y  ++   + P + P  +++HA ++  G+     + T L+++    G    A+ 
Sbjct: 204 KPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEARE 263

Query: 62  IFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           +F  +   D   +N +I   + N   +   ++L  Y+++ +     +  TF +++ +C+ 
Sbjct: 264 VFDKMKKRDMVSWNVMIGCYVLNGDFH---EALELYQKLDMEGFKRTKATFVSILGACSS 320

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           +  L  GR VH H+   G DS++ V  ALVN YAK  +++ ARKVF+ M ++  VAW+++
Sbjct: 321 VKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTL 380

Query: 179 ISGYEQNGFAKEA-------------------------------IGLFNLMRDF----GV 203
           I  Y  NG+ K+A                               +    + R+     G+
Sbjct: 381 IGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGL 440

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            PD+ T + VL ACA LG +   + +H  I    L+ NVV+  +LINMYARCG++ +A  
Sbjct: 441 KPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAER 500

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +F    E  V++WTAM++ +  +G   EA++LF  M   GV+P++VT+ ++L  C H G 
Sbjct: 501 LFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGS 560

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           +++G R F  M + + L P  +H   MVDL GR+G L +A + ++ +  E P P  W   
Sbjct: 561 LEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFE-PDPVAWMTF 619

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           L AC++H   +LG   AE +  ++P +   Y+ +SNIYA  G  ++V  VR  M ++GLK
Sbjct: 620 LTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLK 679

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K  G S +EVD K + FS G K HP T+EI + L  L G  R AGYVP++++ +H++ E 
Sbjct: 680 KLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEG 739

Query: 504 EREYSLRYHSEKLALAFGLMRT-SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           E+E  L YHSEK+A+AFGL+ +   G  IR+VKNLR+C DCH+A KFI+    R+IIVRD
Sbjct: 740 EKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRD 799

Query: 563 RLRFHHFKR-GSCSCLDYW 580
             RFH F   G CSC DYW
Sbjct: 800 CNRFHRFSSDGKCSCGDYW 818



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 224/444 (50%), Gaps = 41/444 (9%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           + ++L A   L   +++H  +  +G    +S+   L+++    G +  A+R+F  + + D
Sbjct: 113 FVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRD 172

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
              +N +I+ +S++   + +L  ++ M   ++ P++ T+  VI   +   +L  GR +H 
Sbjct: 173 ETSWNAVILAHSQSGDWSGALRIFKEMKC-DVKPNSTTYINVISGFSTPEVLPEGRKIHA 231

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
            +  +G+D+DL V  AL+N Y K  +   AR+VFD+M  + +V+WN MI  Y  NG   E
Sbjct: 232 EIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHE 291

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ L+  +   G      T V +L AC+ +  +  GR VH  I+ +GLD  V +AT+L+N
Sbjct: 292 ALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVN 351

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE------------------- 291
           MYA+CG++ +AR++F+ M   + +AW+ +I  Y  +GYG +                   
Sbjct: 352 MYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISW 411

Query: 292 ---------------AVELFHRMR-AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
                          A+++F  M  A G++P+ VTF+AVL ACA  G + E   + A + 
Sbjct: 412 NAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQI- 470

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
            E  L   V     +++++ R G L EA +       ++     WTAM+ A   +  +  
Sbjct: 471 SESELESNVVVTNTLINMYARCGSLEEAERLF--AAAKEKTVVSWTAMVAAFSQYGRYAE 528

Query: 396 GVEVAEH--LLSVEPENPGHYVML 417
            +++ +   L  V+P++  +  +L
Sbjct: 529 ALDLFQEMDLEGVKPDDVTYTSIL 552



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 178/313 (56%), Gaps = 7/313 (2%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N +I   ++   ST++L+ Y RM +  +   + TF +V+ +C+ L+    GR +H  VF
Sbjct: 78  WNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVF 134

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            SG DS   +  ALV  YA+  +V  A+++F  +  +   +WN++I  + Q+G    A+ 
Sbjct: 135 YSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALR 194

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           +F  M+   V P+STT + V++  +    +  GR +H  IV  G D ++V+AT+LINMY 
Sbjct: 195 IFKEMK-CDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYG 253

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +CG+  +ARE+FD M + ++++W  MI  Y ++G   EA+EL+ ++   G +    TFV+
Sbjct: 254 KCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVS 313

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           +L AC+    + +G R+  S   E GL   V     +V+++ + G L EA K V + +  
Sbjct: 314 ILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARK-VFNAMKN 371

Query: 374 KPAPAVWTAMLGA 386
           + A A W+ ++GA
Sbjct: 372 RDAVA-WSTLIGA 383



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 185/359 (51%), Gaps = 20/359 (5%)

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P N TF  V+ SC+    +  GRA+H  +  S ++ D  V  AL++ Y K +++  AR V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 164 FDRMP--DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           F+ M    ++VV+WN+MI+ Y QNG + EA+ L+  M   G+  D  T V VL AC+ L 
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA 124

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
               GR +H  +   GLD    LA +L+ MYAR G+V  A+ +F  +   +  +W A+I 
Sbjct: 125 Q---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVIL 181

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
            +   G  + A+ +F  M+   V+PN+ T++ V+S  +   ++ EG ++ A +    G  
Sbjct: 182 AHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVAN-GFD 239

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
             +     +++++G+ G  +EA +    +  +K     W  M+G   ++ +F   +E+ +
Sbjct: 240 TDLVVATALINMYGKCGSSHEAREVFDKM--KKRDMVSWNVMIGCYVLNGDFHEALELYQ 297

Query: 402 HL-LSVEPENPGHYVML----SNIYALA-GRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
            L +         +V +    S++ ALA GR+     V + ++++GL   V  +T  V+
Sbjct: 298 KLDMEGFKRTKATFVSILGACSSVKALAQGRL-----VHSHILERGLDSEVAVATALVN 351


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/558 (38%), Positives = 322/558 (57%), Gaps = 33/558 (5%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+ +F  +P  ++  +  +I   ++   S ++L   + +  + + PS  + ++  
Sbjct: 366 GMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSF 425

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
            +C+H+  L  GR VH     +G   + +V  AL++ Y K  N++  R+VF+RM  K  V
Sbjct: 426 LACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTV 485

Query: 174 AWNS-------------------------------MISGYEQNGFAKEAIGLFNLMRDFG 202
           +WNS                               +IS Y Q     EA+  F  M    
Sbjct: 486 SWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEH 545

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
             P+S     +L+ C  LG   LG+ +H   +  G+D  +++A +L++MY +CG  + + 
Sbjct: 546 EKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSH 604

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           ++FD M E ++  W   I+G   HG G EA++++  M + GV PN VTFV +L+AC+HAG
Sbjct: 605 KVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAG 664

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           LV EG + F SM ++YGL P +EH+ CMVDL GR G +  A KF+ D+  E P   +W+A
Sbjct: 665 LVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIE-PDTVIWSA 723

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LGACK+HKN ++G   AE L + EP N G+YVMLSNIY+  G    V  +R IM Q+G+
Sbjct: 724 LLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGV 783

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
            K  G S +++  K + F  GDK H    EI   L +L    R  GYVP++E  +H+++E
Sbjct: 784 SKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDE 843

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           E++E SL YHSEKLA+A+GL+ T  GM I+I+KNLR+C DCH+ IKF+S  T R+I +RD
Sbjct: 844 EQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRD 903

Query: 563 RLRFHHFKRGSCSCLDYW 580
             RFHHF+ GSCSC D+W
Sbjct: 904 GNRFHHFRNGSCSCGDFW 921



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 161/380 (42%), Gaps = 64/380 (16%)

Query: 23  PLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNS 82
           P++ VH  L  + +      L +L       G +  A+ +F  +P  D   +N++I    
Sbjct: 23  PVRSVHRALDKSAHSARIRELARL-------GRLREAREVFDAMPHRDIIAWNSMI---- 71

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH-VFVSGYDSDL 141
            + +    +L   R++   IS  N   + ++ S        LGR +    VF    + + 
Sbjct: 72  -SAYCNSGMLEDARILFDAISGGNVRTATILLS----GYARLGRVLDARRVFDGMPERNT 126

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY------------------- 182
               A+V+ Y ++ ++ +AR++FD MP + V +WNSM++GY                   
Sbjct: 127 VAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQR 186

Query: 183 ---------------EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
                          EQ+G   +   +F +M   G +PD +    VL+A   L D+ +  
Sbjct: 187 NLVTWTVMISGYVRIEQHG---KGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLE 243

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYAR-CGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
            +   ++  G + +VV+ TS++N+Y R    +  A + FD M E N   W+ MI+     
Sbjct: 244 VLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHG 303

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
           G    A+ ++ R     + P+     A+L+  A  G + E   +F  +       P V  
Sbjct: 304 GRIDAAIAVYGRDPVKSI-PSQ---TALLTGLARCGRITEARILFEQIPD-----PIVVS 354

Query: 347 HVCMVDLFGRAGLLNEAYKF 366
              M+  + + G+++EA + 
Sbjct: 355 WNAMITGYMQNGMVDEAKEL 374


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/561 (37%), Positives = 325/561 (57%), Gaps = 23/561 (4%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           R+     V  +++V+GY R   M+               A+R+F   P  D F +  ++ 
Sbjct: 218 RMPGRDVVSWNIMVSGYARRGDMVE--------------ARRLFDAAPVRDVFTWTAVVS 263

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             ++     ++   +  M   N    N   +A I+         L   + C    S    
Sbjct: 264 GYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS---- 319

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
                  ++  YA++  ++ A+ VFD MP K  V+W +M++ Y Q G ++E + LF  M 
Sbjct: 320 ----WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 375

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G   + +   CVL+ CA +  ++ G  +H  ++  G  V   +  +L+ MY +CGN+ 
Sbjct: 376 RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNME 435

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            AR  F+ M E +V++W  MI+GY  HG+G EA+E+F  MR    +P+++T V VL+AC+
Sbjct: 436 DARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS 495

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H+GLV++G   F SM  ++G+    EH+ CM+DL GRAG L EA+  +KD+  E P   +
Sbjct: 496 HSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE-PDSTM 554

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W A+LGA ++H+N +LG   AE +  +EPEN G YV+LSNIYA +G+      +R +M +
Sbjct: 555 WGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEE 614

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           +G+KK  G+S +EV  K + FS GD  HP   +IY +L++L  R ++AGYV  ++  +H+
Sbjct: 615 RGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHD 674

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           +EEEE+E+ L+YHSEKLA+A+G++   PG  IR++KNLR+C DCH+A K+IS    R I+
Sbjct: 675 VEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLIL 734

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           +RD  RFHHF+ GSCSC DYW
Sbjct: 735 LRDSNRFHHFRGGSCSCGDYW 755



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 158/358 (44%), Gaps = 63/358 (17%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           RS S    +L+     G +  A  +F  IP PD++ +NTL+   + ++   D+   +  M
Sbjct: 67  RSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM 126

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGR----------AVHCHVFVSGYDSDLHVQAA- 146
            V +    + T++ +I S A+  +++L R          AV  +  ++ Y  +  V+ A 
Sbjct: 127 PVRD----SVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEAR 182

Query: 147 ----------------LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
                           L++ Y +   +  AR++FDRMP + VV+WN M+SGY + G   E
Sbjct: 183 GLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVE 242

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR-------------W---VHEFIV 234
           A  LF    D     D  T   V++  AQ G ++  R             W   V  +I 
Sbjct: 243 ARRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQ 298

Query: 235 GQGLDV-----------NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
            + +D            NV    +++  YA+ G + +A+ +FD M + + ++W AM++ Y
Sbjct: 299 RRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAY 358

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGL 340
              G   E ++LF  M   G   N   F  VLS CA    ++ G ++   + R  YG+
Sbjct: 359 SQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV 416



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 142/321 (44%), Gaps = 47/321 (14%)

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF------------ 195
           +  + ++  V  A ++F  MP +S   +N+M++GY  NG    A  LF            
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYN 104

Query: 196 NLMRDFGVNP---------------DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
            L+    V+                DS T   ++++ A  G + L R  H F +    D 
Sbjct: 105 TLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLAR--HYFDLAPEKD- 161

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
             V    ++  Y R G V +AR +F+  +E + I+W A++SGY   G  +EA ELF RM 
Sbjct: 162 -AVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMP 220

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
              V    V++  ++S  A  G + E  R+F     +   +  V     +V  + + G+L
Sbjct: 221 GRDV----VSWNIMVSGYARRGDMVEARRLF-----DAAPVRDVFTWTAVVSGYAQNGML 271

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP-ENPGHYVMLSN 419
            EA + V D + E+ A + W AM+ A    +  D     A+ L ++ P  N   +  +  
Sbjct: 272 EEARR-VFDAMPERNAVS-WNAMVAAYIQRRMMD----EAKELFNMMPCRNVASWNTMLT 325

Query: 420 IYALAGRMDRVEVVRNIMIQK 440
            YA AG ++  + V + M QK
Sbjct: 326 GYAQAGMLEEAKAVFDTMPQK 346



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 11/149 (7%)

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           L+  V+ +   I  + R G V+ A  +F  M   +   + AM++GY  +G    A  LF 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
            +     RP+N ++  +L A A +  + +   +F     E  +   V ++V M+      
Sbjct: 94  AI----PRPDNYSYNTLLHALAVSSSLADARGLF----DEMPVRDSVTYNV-MISSHANH 144

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           GL++ A  +  D+  EK A + W  ML A
Sbjct: 145 GLVSLARHYF-DLAPEKDAVS-WNGMLAA 171


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/561 (37%), Positives = 325/561 (57%), Gaps = 23/561 (4%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           R+     V  +++V+GY R   M+               A+R+F   P  D F +  ++ 
Sbjct: 218 RMPGRDVVSWNIMVSGYARRGDMVE--------------ARRLFDAAPVRDVFTWTAVVS 263

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             ++     ++   +  M   N    N   +A I+         L   + C    S    
Sbjct: 264 GYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS---- 319

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
                  ++  YA++  ++ A+ VFD MP K  V+W +M++ Y Q G ++E + LF  M 
Sbjct: 320 ----WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 375

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G   + +   CVL+ CA +  ++ G  +H  ++  G  V   +  +L+ MY +CGN+ 
Sbjct: 376 RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNME 435

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            AR  F+ M E +V++W  MI+GY  HG+G EA+E+F  MR    +P+++T V VL+AC+
Sbjct: 436 DARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS 495

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H+GLV++G   F SM  ++G+    EH+ CM+DL GRAG L EA+  +KD+  E P   +
Sbjct: 496 HSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE-PDSTM 554

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W A+LGA ++H+N +LG   AE +  +EPEN G YV+LSNIYA +G+      +R +M +
Sbjct: 555 WGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEE 614

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           +G+KK  G+S +EV  K + FS GD  HP   +IY +L++L  R ++AGYV  ++  +H+
Sbjct: 615 RGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHD 674

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           +EEEE+E+ L+YHSEKLA+A+G++   PG  IR++KNLR+C DCH+A K+IS    R I+
Sbjct: 675 VEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLIL 734

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           +RD  RFHHF+ GSCSC DYW
Sbjct: 735 LRDSNRFHHFRGGSCSCGDYW 755



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 163/337 (48%), Gaps = 33/337 (9%)

Query: 53  AGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS-PSNYTFSA 111
           AG +  A+R+F  +P   +  +N ++     A +S +  L     +   I  P NY+++ 
Sbjct: 51  AGRVADAERLFAAMPRRSTSTYNAML-----AGYSANGRLPLAASLFRAIPRPDNYSYNT 105

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           ++ + A  S L   R +   + V     D      +++ +A    V +AR  FD  P+K 
Sbjct: 106 LLHALAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSLARHYFDLAPEKD 161

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
            V+WN M++ Y +NG  +EA GLFN   ++    D  +   +++   Q G +   R + +
Sbjct: 162 AVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DVISWNALMSGYVQWGKMSEARELFD 217

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
            + G+    +VV    +++ YAR G++ +AR +FD     +V  WTA++SGY  +G   E
Sbjct: 218 RMPGR----DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEE 273

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP--GVEHHVC 349
           A  +F  M       N V++ A+++A     ++ E   +F        ++P   V     
Sbjct: 274 ARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELF-------NMMPCRNVASWNT 322

Query: 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           M+  + +AG+L EA K V D + +K A + W AML A
Sbjct: 323 MLTGYAQAGMLEEA-KAVFDTMPQKDAVS-WAAMLAA 357



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 150/300 (50%), Gaps = 20/300 (6%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           RS S    +L+     G +  A  +F  IP PD++ +NTL+   + ++   D+   +  M
Sbjct: 67  RSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM 126

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
            V +    + T++ +I S A+  +++L R    H F    + D      ++  Y ++  V
Sbjct: 127 PVRD----SVTYNVMISSHANHGLVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRV 178

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
           + AR +F+   +  V++WN+++SGY Q G   EA  LF+ M       D  +   +++  
Sbjct: 179 EEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRM----PGRDVVSWNIMVSGY 234

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
           A+ GD+   R + +    +    +V   T++++ YA+ G + +AR +FD M E N ++W 
Sbjct: 235 ARRGDMVEARRLFDAAPVR----DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWN 290

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           AM++ Y       EA ELF+ M    V     ++  +L+  A AG+++E   VF +M Q+
Sbjct: 291 AMVAAYIQRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTMPQK 346



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 143/321 (44%), Gaps = 47/321 (14%)

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF------------ 195
           +  + ++  V  A ++F  MP +S   +N+M++GY  NG    A  LF            
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYN 104

Query: 196 NLMRDFGVNP---------------DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
            L+    V+                DS T   ++++ A  G + L R  H F +    D 
Sbjct: 105 TLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLAR--HYFDLAPEKD- 161

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
             V    ++  Y R G V +AR +F+  +E +VI+W A++SGY   G  +EA ELF RM 
Sbjct: 162 -AVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP 220

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
              V    V++  ++S  A  G + E  R+F     +   +  V     +V  + + G+L
Sbjct: 221 GRDV----VSWNIMVSGYARRGDMVEARRLF-----DAAPVRDVFTWTAVVSGYAQNGML 271

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP-ENPGHYVMLSN 419
            EA + V D + E+ A + W AM+ A    +  D     A+ L ++ P  N   +  +  
Sbjct: 272 EEARR-VFDAMPERNAVS-WNAMVAAYIQRRMMD----EAKELFNMMPCRNVASWNTMLT 325

Query: 420 IYALAGRMDRVEVVRNIMIQK 440
            YA AG ++  + V + M QK
Sbjct: 326 GYAQAGMLEEAKAVFDTMPQK 346



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 11/149 (7%)

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           L+  V+ +   I  + R G V+ A  +F  M   +   + AM++GY  +G    A  LF 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
            +     RP+N ++  +L A A +  + +   +F     E  +   V ++V M+      
Sbjct: 94  AI----PRPDNYSYNTLLHALAVSSSLADARGLF----DEMPVRDSVTYNV-MISSHANH 144

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           GL++ A  +  D+  EK A + W  ML A
Sbjct: 145 GLVSLARHYF-DLAPEKDAVS-WNGMLAA 171


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/562 (36%), Positives = 333/562 (59%), Gaps = 25/562 (4%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           R+    +V  + +++GY ++  +L               AQR+F   P  D F +  ++ 
Sbjct: 148 RMPERDEVSWNTMISGYAQNGELLE--------------AQRLFEESPVRDVFTWTAMV- 192

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSN-YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
               + +  + +L   R +   +   N  +++A+I        ++  R     +F +   
Sbjct: 193 ----SGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQAR----ELFEAMPC 244

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
            ++     ++  YA++ ++  AR  FDRMP +  ++W ++I+GY Q+G+ +EA+ LF  M
Sbjct: 245 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 304

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
           +  G   + +T    L+ CA++  ++LG+ VH  +V  GL+    +  +L+ MY +CGN+
Sbjct: 305 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNI 364

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
             A  +F+ + E  V++W  MI+GY  HG+G EA+ LF  M+  G+ P++VT V VLSAC
Sbjct: 365 DDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSAC 424

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           +H GLV +G   F SM Q+YG+    +H+ CM+DL GRAG L++A   +K++  E P  A
Sbjct: 425 SHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFE-PDAA 483

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
            W A+LGA ++H N +LG + A+ +  +EP+N G YV+LSN+YA +GR   V  +R  M 
Sbjct: 484 TWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMR 543

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
            +G+KK  GYS VEV  K + F++GD  HP  + IY +L+EL  + ++ GYV  ++  +H
Sbjct: 544 DRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLH 603

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
           ++EEEE+ + L+YHSEKLA+AFG++    G  IR++KNLR+C DCH+A+K IS    R I
Sbjct: 604 DVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLI 663

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           I+RD  RFHHF  G CSC DYW
Sbjct: 664 ILRDSHRFHHFNGGQCSCGDYW 685



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 163/360 (45%), Gaps = 44/360 (12%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+ +F  +P  D   +N ++   ++  +  ++   +  M   N    N   +A +++   
Sbjct: 49  ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQN--- 105

Query: 119 LSILNLGRAVHCH-VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
                 GR      +F S  D +L     ++  Y K N +  AR +FDRMP++  V+WN+
Sbjct: 106 ------GRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNT 159

Query: 178 MISGYEQNGFAKEAIGLF--------------------NLMRD-----FGVNPD--STTC 210
           MISGY QNG   EA  LF                    N M D     F   P+  S + 
Sbjct: 160 MISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSW 219

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
             ++A   Q   +D  R + E +  Q    NV    ++I  YA+ G++++AR  FD M +
Sbjct: 220 NAIIAGYVQCKRMDQARELFEAMPCQ----NVSSWNTMITGYAQNGDIAQARNFFDRMPQ 275

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            + I+W A+I+GY   GYG EA+ LF  M+  G R N  TF + LS CA    ++ G +V
Sbjct: 276 RDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQV 335

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
              + +  GL  G      ++ ++ + G +++AY   + +  E+     W  M+     H
Sbjct: 336 HGRVVKA-GLESGCYVGNALLVMYCKCGNIDDAYIVFEGI--EEKEVVSWNTMIAGYARH 392



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 95/182 (52%), Gaps = 12/182 (6%)

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
           N+  AR +FD+MP++ VV+WN+M+SGY QNG+ KEA  +F+ M       +S +   +LA
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM----PCKNSISWNGMLA 100

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           A  Q G I+  R + E       D  ++    ++  Y +   +  AR IFD M E + ++
Sbjct: 101 AYVQNGRIEDARRLFE----SKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVS 156

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           W  MISGY  +G   EA  LF       V     T+ A++S     G++ E  RVF  M 
Sbjct: 157 WNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVFDGMP 212

Query: 336 QE 337
           ++
Sbjct: 213 EK 214



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           R  N+  AR +FD M E +V++W AM+SGY  +GY  EA E+F  M       N++++  
Sbjct: 42  RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC----KNSISWNG 97

Query: 314 VLSACAHAGLVQEGHRVFAS 333
           +L+A    G +++  R+F S
Sbjct: 98  MLAAYVQNGRIEDARRLFES 117


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/574 (36%), Positives = 341/574 (59%), Gaps = 4/574 (0%)

Query: 10  AYEAILKAGPRLKPLQQVHA---HLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
            Y+A++ A   LK ++ V     +++  G+   + M  ++L +    G +  A R+F  +
Sbjct: 134 TYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEM 193

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P+ ++  + T+I     +    ++   +  M          TF+ +I++ A L I+  GR
Sbjct: 194 PARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGLEIIFPGR 253

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H     +G   D+ V  AL++ Y+K  +++ A  VFD MPDK++V WNS+I+GY  +G
Sbjct: 254 QLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHG 313

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
           +++EA+ L++ MRD GV  D  T   ++  C++L  +   + VH  +V  G  ++VV  T
Sbjct: 314 YSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANT 373

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           +L++ Y++ G V  AR +FD MS  N+I+W A+I+GYG HG+G EA+++F +M   G+ P
Sbjct: 374 ALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMP 433

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           N+VTF+AVLSAC+ +GL + G  +F SM +++ + P   H  CM++L GR GLL+EAY  
Sbjct: 434 NHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYAL 493

Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
           ++    + P   +W A+L AC++H N +LG   AE L  +EPE   +Y++L NIY  +G+
Sbjct: 494 IRKAPFQ-PTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGK 552

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE 486
           +     V   + +KGL+     S +EV+ + + F  GDK H    ++   +DELM    +
Sbjct: 553 LKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDELMLNISK 612

Query: 487 AGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSA 546
            GYVPE ++ M    +E  E    YHSEKLA+A+GL+ T     ++IV++ R+C DCHS 
Sbjct: 613 LGYVPEEQNFMLPDVDENEEKIRMYHSEKLAIAYGLLNTLEKTPLQIVQSHRICSDCHSV 672

Query: 547 IKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           IK I++ T REI++RD  RFHHF+ GSCSC DYW
Sbjct: 673 IKLIAMITKREIVIRDASRFHHFRDGSCSCGDYW 706



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 8/205 (3%)

Query: 189 KEAIGLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
           ++A+ +F +   + G +   +T   ++ AC  L  I   + +  ++V  G + +  +   
Sbjct: 113 RDALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNR 172

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           ++ M+ +CG +  A  +FD M   N ++W  +ISGY   G   EA  LF  MR       
Sbjct: 173 VLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCG 232

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
             TF  ++ A A   ++  G R   S   + GL   +     ++D++ + G L +A+   
Sbjct: 233 PRTFATMIRASAGLEIIFPG-RQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHC-- 289

Query: 368 KDVIGEKPAPAV--WTAMLGACKMH 390
             V  E P   +  W +++    +H
Sbjct: 290 --VFDEMPDKTIVGWNSIIAGYALH 312


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/561 (36%), Positives = 327/561 (58%), Gaps = 1/561 (0%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
            L  L+ +H + +   +     +    ++     G + +A+ +FF + +     +N +I 
Sbjct: 431 ELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIG 490

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
            +++      +L FY  M    I P +++  +++ +C  L +L  G+ +H  V  +G + 
Sbjct: 491 GHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEM 550

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           +  V  +L++ Y   +     R  F+RM DK+ V WN+M+SGY QN    EA+ LF  M 
Sbjct: 551 NSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQML 610

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+ PD      +L AC+QL  + LG+ VH F +   L  +  +A SL++MYA+ G + 
Sbjct: 611 SDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLG 670

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            ++ IF+ ++   V +W  MI+G+G+HG G +AVELF  M+    +P+  TF+ VL AC 
Sbjct: 671 HSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACC 730

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           HAGLV EG    A M+  Y L P +EH+ C++D+ GRAG LNEA  F+ + + E+P   +
Sbjct: 731 HAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINE-MPEEPDAKI 789

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W+++L +   + + ++G + AE LL++E      Y++LSN+YA AG+ D V +VR  M  
Sbjct: 790 WSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKD 849

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
             L+K VG S +E+  K Y F  G+ S+P+++EI +  + L  +  E GY P+    +HE
Sbjct: 850 LSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHE 909

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           LEE E+   L+ HSEK+A+ FG + T  G T+RI KNLR+C DCH+A K+IS A  REI+
Sbjct: 910 LEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIV 969

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           +RD  RFHHFK+G CSC DYW
Sbjct: 970 IRDNKRFHHFKKGICSCGDYW 990



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 154/282 (54%), Gaps = 9/282 (3%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVS 100
           T+L+++    G+   ++ +F  + + + F +N L+   +RN   + +  +  F   + V+
Sbjct: 147 TRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHT--FLELISVT 204

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
              P N+TF  +IK+C     ++LG++VH      G   DL V  A++  Y K   +D A
Sbjct: 205 EFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEA 264

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN--LMRDFGVNPDSTTCVCVLAACA 218
            ++FD+MP++++++WNS+I G+ +NGF  EA   F   L    G+ PD  T V +L  C+
Sbjct: 265 VELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCS 324

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
             G++D+G  +H   V  GL   +++  +LI+MY++CG +S+A  +F  +   +V++W +
Sbjct: 325 GEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNS 384

Query: 279 MISGYGMHGYGTEAVELFHR--MRAHGVRPNNVTFVAVLSAC 318
           MI  Y   G+  E  +L  +  M    +  N VT + +L AC
Sbjct: 385 MIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 185/398 (46%), Gaps = 6/398 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H   +  G      +   L+ +    G ++ A  +F  I +     +N++I   S+  F
Sbjct: 335 IHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGF 394

Query: 87  STDSLLFYRRMIVSN--ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             ++    R+M +    +  +  T   ++ +C   S L   RA+H +     +     + 
Sbjct: 395 VFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELIN 454

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            A +  YAK  ++  A  VF  M  KSV +WN++I G+ QNG   +A+  +  M   G+ 
Sbjct: 455 NAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGIL 514

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD  + V +L AC +LG +  G+ +H F++  GL++N  +A SL+++Y  C      R  
Sbjct: 515 PDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTY 574

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ M + N + W AM+SGY  +    EA+ LF +M + G+ P+ +   ++L AC+    +
Sbjct: 575 FERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSAL 634

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
             G  V     +   L+        ++D++ ++G L  + +    + G++ A   W  M+
Sbjct: 635 GLGKEVHCFALKN-SLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVAS--WNVMI 691

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
               +H   +  VE+ E +   + + P  +  L  + A
Sbjct: 692 TGFGVHGQGNKAVELFEDMKRSDKQ-PDRFTFLGVLQA 728



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 146/281 (51%), Gaps = 11/281 (3%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSG-YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
           +++ C     + +GR +   + VS  +  D  +   L+  Y+       +R VFDR+ +K
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           ++  WN+++SGY +N    EAI  F  L+      PD+ T  C++ AC    DI LG+ V
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV 232

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           H   V  GL +++ +  ++I +Y +CG + +A E+FD M E N+I+W ++I G+  +G+ 
Sbjct: 233 HGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFW 292

Query: 290 TEAVELFHRM--RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
            EA   F  +     G+ P+  T V +L  C+  G V  G  V   M  + GL+   E  
Sbjct: 293 LEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVG-MVIHGMAVKLGLVH--ELM 349

Query: 348 VC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           VC  ++D++ + G L+EA    + +  E  +   W +M+GA
Sbjct: 350 VCNALIDMYSKCGCLSEAAILFRKI--ENKSVVSWNSMIGA 388



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 194/437 (44%), Gaps = 45/437 (10%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP +  +  ++KA      +   + VH   +  G      +   +++L    GF+  A  
Sbjct: 207 QPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVE 266

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS--NISPSNYTFSAVIKSCAHL 119
           +F  +P  +   +N+LI   S+  F  ++   +R ++ S   + P   T   ++  C+  
Sbjct: 267 LFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGE 326

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             +++G  +H      G   +L V  AL++ Y+K   +  A  +F ++ +KSVV+WNSMI
Sbjct: 327 GNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMI 386

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPD-----STTCVCVLAACAQLGDIDLGRWVHEFIV 234
             Y + GF  E    F+L+R   +  +       T + +L AC +  ++   R +H + +
Sbjct: 387 GAYSREGFVFET---FDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSL 443

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
                   ++  + I  YA+CG++  A  +F  M+  +V +W A+I G+  +G   +A++
Sbjct: 444 RHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALD 503

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV-----------------------F 331
            +  M   G+ P++ + V++L AC   GL+Q G  +                       F
Sbjct: 504 FYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYF 563

Query: 332 ASMRQEYGLL----PGVEHHVC---MVDLFGRAGLLNEAYKFVKDVI--GEKPAPAVWTA 382
              +  YG       G ++ VC   M+  + +  L NEA    + ++  G +P      +
Sbjct: 564 HCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIAS 623

Query: 383 MLGACKMHKNFDLGVEV 399
           +LGAC       LG EV
Sbjct: 624 ILGACSQLSALGLGKEV 640


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/584 (35%), Positives = 345/584 (59%), Gaps = 5/584 (0%)

Query: 1   MKNKQPHSPAYEAILKAGPRL---KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           M N +P++    ++L A   L   +  + VH   +  G+  +  + T L+ +    G + 
Sbjct: 115 MGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMG 174

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A+++F  +   +   +N ++   S   FS +++  +  M    +    YT  ++I +  
Sbjct: 175 VARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASL 234

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            +  L +G  +H  +  +GY++D H++ AL++ Y   N VD A +VF  M  K V AW  
Sbjct: 235 SVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTL 294

Query: 178 MISGYEQNGFAKEAIGLFNLMRDF-GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
           M++G+        AI  FN M     +  DS   + +L++C+  G +  GR VH   +  
Sbjct: 295 MLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKT 354

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
               N+ + +++I+MYA CGN+  A+  F  M E +V+ W AMI+G GM+GYGT+A++LF
Sbjct: 355 CFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLF 414

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
            +M+  G+ P+  TFV+VL AC+HAG+V EG ++F  M +   ++P ++H+ C++D+ GR
Sbjct: 415 LQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGR 474

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
           AG L+ AY F+ + +  +P   V++ +LGAC++H N  LG E+++ +  +EP + G+YV+
Sbjct: 475 AGQLDAAYSFINN-MPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVL 533

Query: 417 LSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQY 476
           LSN+YALAG  + V++ R  +  K +KK  G+S++E++Q+ Y F  G+K HP   +I   
Sbjct: 534 LSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGI 593

Query: 477 LDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKN 536
           L  L+ + ++AGYVP +   + ++ ++ ++  L +HSEK+A+AFGLMRT P   IRI KN
Sbjct: 594 LKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKN 653

Query: 537 LRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           LR C DCH+A KF+S    R ++++D  RFH F+ G CSC DYW
Sbjct: 654 LRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/421 (28%), Positives = 231/421 (54%), Gaps = 13/421 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           QPH+    +IL+    LKPLQQ+HA +I +G   +  +   L++     G +  A++IF 
Sbjct: 25  QPHA----SILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFH 80

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
             P  +   +  LI   +K +   +++  +R MI+ N  P+  T S+V+ + A+L ++ +
Sbjct: 81  HTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRI 140

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
            ++VHC     G++ ++ V+ ALV+ Y+K   + VAR++F+ M +++VV WN+++SGY  
Sbjct: 141 AKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSD 200

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           +GF++EAI LFNLMR  G+  D  T + ++ A   +G + +G  +H FI+  G + +  +
Sbjct: 201 HGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHI 260

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA-HG 303
            T+L+++Y     V  A  +F  MS  +V AWT M++G+    +   A++ F++M     
Sbjct: 261 KTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQN 320

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           ++ +++  + +LS+C+H+G +Q+G RV A +  +      +     ++D++   G L +A
Sbjct: 321 LKLDSIALMGILSSCSHSGALQQGRRVHA-LAIKTCFANNIFVGSAVIDMYANCGNLEDA 379

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE--NPGHYVMLSNIY 421
            +F    +GEK     W AM+    M+     G +  +  L ++    +P     +S +Y
Sbjct: 380 KRFFYG-MGEKDV-VCWNAMIAGNGMN---GYGTDAIDLFLQMKGSGLDPDESTFVSVLY 434

Query: 422 A 422
           A
Sbjct: 435 A 435


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/548 (39%), Positives = 318/548 (58%), Gaps = 25/548 (4%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           L+S     G I+ A+++F  +P  +   +  +I    +     ++ L + RM   N+   
Sbjct: 31  LVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVVSW 90

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHC-HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
                 +I+          GR      +F      D+     +++       +  AR++F
Sbjct: 91  TVMLGGLIED---------GRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIF 141

Query: 165 DRMPDKSVVAWNSMISG-------------YEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
           D MP ++VVAW SMISG             YE+ GF  EA+ LF+LM+  GV P   + +
Sbjct: 142 DEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVI 201

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
            VL+ C  L  +D GR VH  +V    D+++ +++ LI MY +CG++  A+ +FD  S  
Sbjct: 202 SVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSK 261

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           +++ W ++I+GY  HG+G +A+E+FH M +  + P+ +TF+ VLSAC++ G V+EG  +F
Sbjct: 262 DIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIF 321

Query: 332 ASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHK 391
            SM+ +Y + P  EH+ CMVDL GRAG LNEA   ++++  E  A  VW A+LGAC+ HK
Sbjct: 322 ESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADA-IVWGALLGACRTHK 380

Query: 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTV 451
           N DL    A+ LL +EP N G Y++LSN+Y+   R   V  +R  M  K L+K  G S +
Sbjct: 381 NLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWI 440

Query: 452 EVDQKNYLFS-MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLR 510
           EVD+K ++FS  G  SHP    I + L +L    REAGY P+    MH+++EEE+ +SLR
Sbjct: 441 EVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSLR 500

Query: 511 YHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
            HSEKLA+A+GL++   GM IR++KNLR+C D HS IK I+  T REII+RD  RFHHFK
Sbjct: 501 DHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFK 560

Query: 571 RGSCSCLD 578
            G CSC D
Sbjct: 561 DGLCSCSD 568



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 158/358 (44%), Gaps = 85/358 (23%)

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV---------------- 203
           ARK+FD+MP+ + ++WN ++SGY QNG   EA  +F+ M +  V                
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLI 72

Query: 204 -----------NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252
                        +  +   +L    + G +D  R + + +  +    +VV +T++I+  
Sbjct: 73  EEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVK----DVVASTNMIDGL 128

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISG-------------YGMHGYGTEAVELFHRM 299
              G + +AREIFD M + NV+AWT+MISG             Y   G+  EA+ LF  M
Sbjct: 129 CSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLM 188

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPGVEHHVCMVDLFGRAG 358
           +  GVRP+  + ++VLS C     +  G +V + + R ++ +   +     ++ ++ + G
Sbjct: 189 QREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDI--DIYVSSVLITMYIKCG 246

Query: 359 LLNEAYKFV-----KDVI--------------GEK--------------PAPAVWTAMLG 385
            L  A +       KD++              GEK              P    +  +L 
Sbjct: 247 DLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLS 306

Query: 386 ACKMHKNFDLGVEVAEHLLS---VEPENPGHYVMLSNIYALAGRMDR-VEVVRNIMIQ 439
           AC        G+E+ E + S   V+P+   HY  + ++   AG+++  + ++ N+ ++
Sbjct: 307 ACSYTGKVKEGLEIFESMKSKYQVDPKTE-HYACMVDLLGRAGKLNEAMNLIENMPVE 363



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 85/181 (46%), Gaps = 7/181 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P  P+  ++L     L  L   +QVH+ L+ + +     + + L+++    G +  A+R
Sbjct: 194 RPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKR 253

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F    S D  ++N++I   ++  F   +L  +  M  S+I+P   TF  V+ +C++   
Sbjct: 254 VFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGK 313

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQ--AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSM 178
           +  G  +      S Y  D   +  A +V+   ++  ++ A  + + MP +   + W ++
Sbjct: 314 VKEGLEIF-ESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGAL 372

Query: 179 I 179
           +
Sbjct: 373 L 373


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/510 (40%), Positives = 322/510 (63%), Gaps = 3/510 (0%)

Query: 72  FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           F+  +LI   S+  F+  +   +  M   ++   N   S +I++      L++   +   
Sbjct: 151 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 210

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
                + + + +    V+ YAK   +D A KVF+ +P K V++WN++I+GY QNG A EA
Sbjct: 211 GIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEA 270

Query: 192 IGLFNLMRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           I ++ +M +   + P+  T V +L A A +G +  G  +H  ++   L ++V +AT LI+
Sbjct: 271 IEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLID 330

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           +Y +CG +  A  +F  + + + + W A+IS +G+HG+  + ++LF  M   GV+P++VT
Sbjct: 331 VYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVT 390

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           FV++LSAC+H+G V+EG   F  M QEYG+ P ++H+ CMVDL GRAG L  AY F+KD 
Sbjct: 391 FVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKD- 448

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
           +  +P  ++W A+LGAC++H N +LG   ++ L  V+ +N G+YV+LSNIYA  G+ + V
Sbjct: 449 MPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGV 508

Query: 431 EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
           + VR++  ++GLKK  G+ST+EV++K  +F  G++SHP   EIY+ L  L  + +  GY+
Sbjct: 509 DKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYI 568

Query: 491 PESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFI 550
           P+    + ++EE+E+E+ L  HSE+LA+AFG++ T P   IRI KNLR+C DCH+A KFI
Sbjct: 569 PDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFI 628

Query: 551 SVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S  T REI+VRD  RFHHFK G CSC DYW
Sbjct: 629 SRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 132/487 (27%), Positives = 237/487 (48%), Gaps = 52/487 (10%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSK 83
           +HA L+VAG  +S  + T+L++L  + G ++ ++  F  IP  D + +N++I   + N  
Sbjct: 38  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN-- 95

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
            +F      FY+ ++VS I P  YTF  V+K+C  L     GR +HC  F  G+  ++ V
Sbjct: 96  GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFV 152

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
            A+L++ Y++     +AR +FD MP + + +WN+MISG  QNG A +A+ + + MR  G+
Sbjct: 153 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 212

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
             +  T V +L                                  ++MYA+ G +  A +
Sbjct: 213 KMNFVTVVSILPV-------------------------------FVDMYAKLGLLDSAHK 241

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM-RAHGVRPNNVTFVAVLSACAHAG 322
           +F+++   +VI+W  +I+GY  +G  +EA+E++  M     + PN  T+V++L A AH G
Sbjct: 242 VFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 301

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
            +Q+G ++   + +   L   V    C++D++G+ G L +A      V  E  +   W A
Sbjct: 302 ALQQGMKIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE--SSVTWNA 358

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL--AGRMDRVEVVRNIMIQK 440
           ++    +H + +  +++   +L  E   P H   +S + A   +G ++  +    +M + 
Sbjct: 359 IISCHGIHGHAEKTLKLFGEMLD-EGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEY 417

Query: 441 GLK---KHVGYSTVEVDQKNYLFSMGD--KSHPNTNEIYQYLDELMGRCREAGYVPESES 495
           G+K   KH G     + +  YL    D  K  P   +   +   L+G CR  G +   + 
Sbjct: 418 GIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIW-GALLGACRIHGNIELGKF 476

Query: 496 AMHELEE 502
           A   L E
Sbjct: 477 ASDRLFE 483



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 137/271 (50%), Gaps = 16/271 (5%)

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
             + +H  + V+G    + +   LVN YA   +V ++R  FD++P K V AWNSMIS Y 
Sbjct: 34  FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 93

Query: 184 QNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            NG   EAIG F  L+    + PD  T   VL AC  L D   GR +H +    G   NV
Sbjct: 94  HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNV 150

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +A SLI+MY+R G    AR +FD M   ++ +W AMISG   +G   +A+++   MR  
Sbjct: 151 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 210

Query: 303 GVRPNNVTFVAVLSAC----AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           G++ N VT V++L       A  GL+   H+VF     E   +  V     ++  + + G
Sbjct: 211 GIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVF-----EIIPVKDVISWNTLITGYAQNG 265

Query: 359 LLNEA---YKFVKDVIGEKPAPAVWTAMLGA 386
           L +EA   YK +++     P    W ++L A
Sbjct: 266 LASEAIEVYKMMEECKEIIPNQGTWVSILPA 296



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 104/265 (39%), Gaps = 41/265 (15%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   + +IL A   +  LQQ   +H  +I         + T L+ +    G +  A  +
Sbjct: 285 PNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSL 344

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F+ +P   S  +N +I  +     +  +L  +  M+   + P + TF +++ +C+H   +
Sbjct: 345 FYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFV 404

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G+     +   G    L     +V+   ++  +++A                      
Sbjct: 405 EEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMA---------------------- 442

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
                       ++ ++D  + PD++    +L AC   G+I+LG++  + +  +    NV
Sbjct: 443 ------------YDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLF-EVDSKNV 489

Query: 243 VLATSLINMYARCGN---VSKAREI 264
                L N+YA  G    V K R +
Sbjct: 490 GYYVLLSNIYANVGKWEGVDKVRSL 514


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/561 (37%), Positives = 325/561 (57%), Gaps = 23/561 (4%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           R+     V  +++V+GY R   M+               A+R+F   P  D F +  ++ 
Sbjct: 93  RMPGRDVVSWNIMVSGYARRGDMVE--------------ARRLFDAAPVRDVFTWTAVVS 138

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             ++     ++   +  M   N    N   +A I+         L   + C    S    
Sbjct: 139 GYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS---- 194

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
                  ++  YA++  ++ A+ VFD MP K  V+W +M++ Y Q G ++E + LF  M 
Sbjct: 195 ----WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 250

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G   + +   CVL+ CA +  ++ G  +H  ++  G  V   +  +L+ MY +CGN+ 
Sbjct: 251 RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNME 310

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            AR  F+ M E +V++W  MI+GY  HG+G EA+E+F  MR    +P+++T V VL+AC+
Sbjct: 311 DARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS 370

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H+GLV++G   F SM  ++G+    EH+ CM+DL GRAG L EA+  +KD+  E P   +
Sbjct: 371 HSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE-PDSTM 429

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W A+LGA ++H+N +LG   AE +  +EPEN G YV+LSNIYA +G+      +R +M +
Sbjct: 430 WGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEE 489

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           +G+KK  G+S +EV  K + FS GD  HP   +IY +L++L  R ++AGYV  ++  +H+
Sbjct: 490 RGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHD 549

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           +EEEE+E+ L+YHSEKLA+A+G++   PG  IR++KNLR+C DCH+A K+IS    R I+
Sbjct: 550 VEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLIL 609

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           +RD  RFHHF+ GSCSC DYW
Sbjct: 610 LRDSNRFHHFRGGSCSCGDYW 630



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 124/242 (51%), Gaps = 23/242 (9%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           +++ +A    V +AR  FD  P+K  V+WN M++ Y +NG  +EA GLFN   ++    D
Sbjct: 12  MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----D 67

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             +   +++   Q G +   R + + + G+    +VV    +++ YAR G++ +AR +FD
Sbjct: 68  VISWNALMSGYVQWGKMSEARELFDRMPGR----DVVSWNIMVSGYARRGDMVEARRLFD 123

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
                +V  WTA++SGY  +G   EA  +F  M       N V++ A+++A     ++ E
Sbjct: 124 AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDE 179

Query: 327 GHRVFASMRQEYGLLP--GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
              +F        ++P   V     M+  + +AG+L EA K V D + +K A + W AML
Sbjct: 180 AKELF-------NMMPCRNVASWNTMLTGYAQAGMLEEA-KAVFDTMPQKDAVS-WAAML 230

Query: 385 GA 386
            A
Sbjct: 231 AA 232



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 16/230 (6%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T++ +I S A+  +++L R    H F    + D      ++  Y ++  V+ AR +F+  
Sbjct: 8   TYNVMISSHANHGLVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 63

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
            +  V++WN+++SGY Q G   EA  LF+ M       D  +   +++  A+ GD+   R
Sbjct: 64  TEWDVISWNALMSGYVQWGKMSEARELFDRM----PGRDVVSWNIMVSGYARRGDMVEAR 119

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            + +    +    +V   T++++ YA+ G + +AR +FD M E N ++W AM++ Y    
Sbjct: 120 RLFDAAPVR----DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRR 175

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
              EA ELF+ M    V   N     +L+  A AG+++E   VF +M Q+
Sbjct: 176 MMDEAKELFNMMPCRNVASWNT----MLTGYAQAGMLEEAKAVFDTMPQK 221



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 32/237 (13%)

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           +F S  + D+    AL++ Y +   +  AR++FDRMP + VV+WN M+SGY + G   EA
Sbjct: 59  LFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA 118

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR-------------W---VHEFIVG 235
             LF    D     D  T   V++  AQ G ++  R             W   V  +I  
Sbjct: 119 RRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQR 174

Query: 236 QGLDV-----------NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
           + +D            NV    +++  YA+ G + +A+ +FD M + + ++W AM++ Y 
Sbjct: 175 RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYS 234

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGL 340
             G   E ++LF  M   G   N   F  VLS CA    ++ G ++   + R  YG+
Sbjct: 235 QGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV 291


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/622 (36%), Positives = 342/622 (54%), Gaps = 68/622 (10%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR-NSK 83
           +Q+HA ++      S S+L+ +LS+  +   +  +  IF  +PSP + L    IIR  + 
Sbjct: 25  KQLHAQILRTSLP-SPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTS 83

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
                 SL F+ +M+ S   P +  F +V+KSC  +  L  G +VH  +   G   DL+ 
Sbjct: 84  HGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYT 143

Query: 144 QAALVNFYAK----------------SNNVDV-------------ARKVFDRMPDKSVVA 174
             AL+N Y+K                    DV              RKVF+ MP + +V+
Sbjct: 144 CNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVS 203

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           WN++ISG  QNG  ++A+ +   M +  + PDS T   VL   A+  ++  G+ +H + +
Sbjct: 204 WNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAI 263

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             G D +V + +SLI+MYA+C  V  +  +F M+ + + I+W ++I+G   +G   E ++
Sbjct: 264 RNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLK 323

Query: 295 LFHRM------------------------------------RAHGVRPNNVTFVAVLSAC 318
            F +M                                    R  GV+PN V F+AVL+AC
Sbjct: 324 FFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNYVAFMAVLTAC 383

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           +HAGLV E  + F SM Q+Y ++PG+EH+  + DL GR G L EAY+F+ D+  E P  +
Sbjct: 384 SHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIE-PTGS 442

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
           VW+ +L AC++HKN +L  +V++ L +V+P+N G YV+LSNIY+ AGR      +R  M 
Sbjct: 443 VWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMR 502

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
            KG+KK    S +E+  K + F  GDKSHP  + I + L  L+ +    GYV ++   +H
Sbjct: 503 DKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLH 562

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
           ++EEE++ Y L  HSE+LA+ FG++ T  G TIR+ KNLR+CVDCH+A KFIS    REI
Sbjct: 563 DVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREI 622

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           +VRD  RFHHFK G CSC D+W
Sbjct: 623 VVRDNSRFHHFKDGKCSCGDFW 644


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/558 (37%), Positives = 318/558 (56%), Gaps = 33/558 (5%)

Query: 54   GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
            G +  A+ +F  +P  +S  +  +I    +   S ++L     +  S   PS+ +F++ +
Sbjct: 503  GMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSAL 562

Query: 114  KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV---------------- 157
             +CA++  + +GR +H     +G   + +V   L++ YAK  NV                
Sbjct: 563  SACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTV 622

Query: 158  ---------------DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
                           D AR VF++MP + VV+W ++IS Y Q G  + A+ LF  M   G
Sbjct: 623  SWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARG 682

Query: 203  VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
            + P+  T   +L+AC  LG I LG   H  I   G D  + +  SLI MY +CG      
Sbjct: 683  IKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGF 741

Query: 263  EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
             +F+ M E ++I W A++ G   +G G EA+++F +M   G+ P+ ++F+ VL AC+HAG
Sbjct: 742  CVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAG 801

Query: 323  LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
            LV EG   F SM Q+YG++P V H+ CMVDL GRAG L+EA   +++ +  KP   +W A
Sbjct: 802  LVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIEN-MPVKPDSVIWEA 860

Query: 383  MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
            +LGAC++H+N +LG  VAE L  +       YV+LSN++A  G  D+V  +R +M  +GL
Sbjct: 861  LLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGL 920

Query: 443  KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
             K  G S ++V  K + F  GD++H    EIY  L E  G  R  GY+P++   +H++EE
Sbjct: 921  TKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMPDTNFVLHDVEE 980

Query: 503  EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
            E+++  L YHSEKLA+ FG++ T  G  I+I+KNLR+C DCH+ +KF+S  T R+II+RD
Sbjct: 981  EQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRD 1040

Query: 563  RLRFHHFKRGSCSCLDYW 580
              RFHHF+ GSCSC DYW
Sbjct: 1041 GNRFHHFRDGSCSCGDYW 1058



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 172/362 (47%), Gaps = 42/362 (11%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVA---GYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    +  +L A   L  L+ + +   +A   GY     + + +L+     G +  A  
Sbjct: 358 RPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMH 417

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            F  +P  + + + T+I   ++     D++  Y R+    ++    T +A++ + A +  
Sbjct: 418 FFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGR 473

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           +   R +   +     + ++    A++  Y ++  +  A+ +F +MP K+  +W +MI+G
Sbjct: 474 IQKARLIFDEIL----NPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAG 529

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + QN  ++EA+ L   +   G  P  ++    L+ACA +GD+++GR +H   +  G   N
Sbjct: 530 FVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFN 589

Query: 242 VVLATSLINMYARCGNV-------------------------------SKAREIFDMMSE 270
             +   LI+MYA+CGNV                                 AR +F+ M +
Sbjct: 590 SYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPK 649

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            +V++WTA+IS Y   G+G  A++LF  M A G++PN +T  ++LSAC + G ++ G + 
Sbjct: 650 RDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQF 709

Query: 331 FA 332
            A
Sbjct: 710 HA 711



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 146/327 (44%), Gaps = 39/327 (11%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           L+S + +   +  A+ +F  +P  D   +  +I    +A     +L  +  M+   I P+
Sbjct: 627 LISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPN 686

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
             T ++++ +C +L  + LG   H  +F  G+D+ L V  +L+  Y K    D    VF+
Sbjct: 687 QLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYED-GFCVFE 745

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP+  ++ WN+++ G  QNG  KEAI +F  M   G+ PD  + + VL AC+  G +D 
Sbjct: 746 EMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDE 805

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G W H                S+   Y           I  +     V  +T M+   G 
Sbjct: 806 G-WAH--------------FNSMTQKYG----------IMPL-----VYHYTCMVDLLGR 835

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
            GY +EA  L   M    V+P++V + A+L AC     V+ G RV   + Q     P   
Sbjct: 836 AGYLSEAEALIENM---PVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTK--PKSA 890

Query: 346 HHVCMVDLFGRAGLLN---EAYKFVKD 369
            +V + +LF   G+ +   E  K +KD
Sbjct: 891 TYVLLSNLFASQGMWDKVAEIRKLMKD 917



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 166/366 (45%), Gaps = 54/366 (14%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+R+F  +   D   +N++I   S+     ++ L +   +  NI     T++ ++
Sbjct: 185 GRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR----TWTILL 240

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
              A    +   R     VF S  + ++    A+++ Y ++ ++  ARK+FD MP+K+V 
Sbjct: 241 TGYAKEGRIEEAR----EVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVA 296

Query: 174 AWNSMISGY-----------------EQNGFA--------------KEAIGLFNLMRDFG 202
           +WNS+++GY                 E+N  +               EA  +F  M    
Sbjct: 297 SWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTV 356

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
             PD +  V VL+A   L D++L   +    +  G + +VV+ ++++N Y R G++  A 
Sbjct: 357 ARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAM 416

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
             F+ M E N  +WT MI+ +   G   +A++L+ R+    V     T  A+++A A  G
Sbjct: 417 HFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVG 472

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA--PAVW 380
            +Q+   +F  +     L P V     ++  + + G+L EA    KD+  + P    A W
Sbjct: 473 RIQKARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEA----KDLFQKMPVKNSASW 523

Query: 381 TAMLGA 386
            AM+  
Sbjct: 524 AAMIAG 529



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 136/308 (44%), Gaps = 45/308 (14%)

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           V+ AR+VF+ M  + VV+WNSMI+GY QNG   EA  LF    D  V  +  T   +L  
Sbjct: 187 VEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLF----DAFVGKNIRTWTILLTG 242

Query: 217 CAQLGDIDLGRWVHEFIVGQGL---------------------------DVNVVLATSLI 249
            A+ G I+  R V E +  + +                           + NV    S++
Sbjct: 243 YAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVV 302

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
             Y  C  +S+ARE+FD M E N ++W  MISGY       EA ++F +M     RP+  
Sbjct: 303 TGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQS 362

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYK 365
            FV VLSA    GL  +   +  S+R    +  G E  V     +++ + R G L+ A  
Sbjct: 363 IFVVVLSAI--TGL--DDLELIGSLR-PIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMH 417

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
           F  + + E+   + WT M+ A       D  +++ E    V  +       +   YA  G
Sbjct: 418 FF-ETMPERNEYS-WTTMIAAFAQCGRLDDAIQLYER---VPEQTVATKTAMMTAYAQVG 472

Query: 426 RMDRVEVV 433
           R+ +  ++
Sbjct: 473 RIQKARLI 480


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/591 (37%), Positives = 333/591 (56%), Gaps = 36/591 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC-DAGFITYAQRIFFCIPSPDSFLFNTLII 79
           +  L+Q H+ L+  G       + +LL+ +  D   + YA R+    P P   LFN L  
Sbjct: 14  ISELKQHHSQLVRLGLASRPEHVRRLLAFLARDPAGVPYAARLLAHHPDPHPALFNPLFA 73

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAV--------------------IKSCAH- 118
                + +     F   M+   + P ++T   +                      S AH 
Sbjct: 74  SLPPHHAAA----FLALMLSLPLHPDHFTLPRLLPAAPLPLAAQLHALLLKLNFHSHAHS 129

Query: 119 -----LSILNLGRA-VHCHVF---VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD 169
                 + L  GRA +   +F    S  D D+     +V    +   VD ARK+FD MP+
Sbjct: 130 FNALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMPE 189

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           +++++WN+MISGY + G   +A+ +F+ MR  G+  +       + AC   G +  GR V
Sbjct: 190 RNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREV 249

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           H ++   G+ ++  LAT++++MY +CG+V +A  +F ++    + +W  MI G  +HG  
Sbjct: 250 HRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRC 309

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
            +A+ELFH M    V P++VT V VL+ACAH G+V +GH  F  + Q YG+ P +EH+ C
Sbjct: 310 KDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHYGC 369

Query: 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
           MVDLFGRAGLL+EA K + D+  E P   V  A+ GACK+H++ DLG  +   ++ ++P+
Sbjct: 370 MVDLFGRAGLLDEAKKVIDDMPME-PDIGVLGALFGACKIHRDLDLGEAIGWRVIELDPQ 428

Query: 410 NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPN 469
           N G YV+L+N+ A AG+   V  VR +M ++ + K  G S +E+D +   F  G   H  
Sbjct: 429 NSGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCGSLCHAQ 488

Query: 470 TNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGM 529
             EI+  + ++M + R  GY+P++   +H++ EEE+E  L+YHSEKLA+AFGL+RT PG 
Sbjct: 489 EKEIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLAIAFGLLRTRPGD 548

Query: 530 TIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           T+RI KNLR+C DCH A KFIS    REI+VRDR RFHHFK G+CSC DYW
Sbjct: 549 TVRITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSCRDYW 599


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/539 (38%), Positives = 324/539 (60%), Gaps = 3/539 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L+S+    G  T A  +F  +   D   ++ ++   ++     ++L  +R+M +  ++
Sbjct: 100 TALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVA 159

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P+  T  + + +CA L  L  G  +H  V   G  S + V  ALVN Y K   ++ A + 
Sbjct: 160 PNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEA 219

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F ++ +K+VVAW+++ + Y +N   ++AI + + M   G+ P+STT V VL ACA +  +
Sbjct: 220 FGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAAL 279

Query: 224 DLGRWVHEF--IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
             GR +HE   ++G GL+ +V + T+L+NMY++CGN++ A ++FD ++ L+++ W ++I+
Sbjct: 280 KQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIA 339

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
               HG   +A+ELF RMR  G++P  +TF +VL AC+HAG++ +G + F S   ++G+ 
Sbjct: 340 TNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIF 399

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P  EH  CMVDL GRAG + ++   +  +  E P P  W A LGAC+ ++N D  +  AE
Sbjct: 400 PEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFE-PHPVAWMAFLGACRTYRNMDRAIWAAE 458

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
           +L  ++P     YV+LSN+YA AGR   V  +R  M      K  G S +EV  + + F 
Sbjct: 459 NLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFI 518

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
            GD  HP   EI+  L  L    +EAGYVP++E  +H++++E +E  + YHSEKLA+AF 
Sbjct: 519 SGDLDHPRIGEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFA 578

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           L+ T  G  IR+VKNLR+C DCH+A KFIS   NREI+VRD  RFH F+ G+CSC DYW
Sbjct: 579 LLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/456 (27%), Positives = 219/456 (48%), Gaps = 35/456 (7%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           +LS     G I   ++ F  +P  D   +N LI             LF+R M++  I+P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
               S  + +C     + +GR++   +  +G + +  VQ ALV+ Y K  +   A  VF 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           RM  + VVAW++M++ Y +NG  +EA+GLF  M   GV P+  T V  L ACA LGD+  
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G  +H+ +  QG+   VV+ T+L+N+Y +CG +  A E F  + E NV+AW+A+ + Y  
Sbjct: 181 GALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYAR 240

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           +    +A+ + HRM   G+ PN+ TFV+VL ACA    +++G R+    +   G   G+E
Sbjct: 241 NDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGG---GLE 297

Query: 346 HHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
             V     +V+++ + G L  A      +        +W +++     H   +  +E+ E
Sbjct: 298 SDVYVLTALVNMYSKCGNLALAGDMFDKI--AHLDLVLWNSLIATNAQHGQTEKALELFE 355

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
             + +E   P      S ++A +                    H G   ++  +K+++  
Sbjct: 356 R-MRLEGLQPTIITFTSVLFACS--------------------HAG--MLDQGRKHFVSF 392

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM 497
           +GD       E +  + +L+GR   AG++ +SE  +
Sbjct: 393 IGDHGIFPEAEHFGCMVDLLGR---AGWIVDSEDLL 425


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/575 (37%), Positives = 333/575 (57%), Gaps = 9/575 (1%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP-DSF 72
           I   G  +  ++Q+HA  +V G     S+   L++     GF+  A+RIF  +    D  
Sbjct: 147 ITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEV 206

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
            +N++++   +    + +L  Y  M V  +    +T ++V+ +  ++  L  G   H  +
Sbjct: 207 SWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKL 266

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDV-ARKVFDRMPDKSVVAWNSMISGYE-QNGFAKE 190
             SGY  + HV + L++ Y+K     +  RKVFD + +  +V WN+MISGY      + E
Sbjct: 267 IKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDE 326

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN-VVLATSLI 249
           A+  F  ++  G  PD  + VCV++AC+ +     GR VH   +   +  N + +  +LI
Sbjct: 327 ALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALI 386

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
            MY++CGN+  A+ +FD M E N +++ +MI+GY  HG G +++ LF RM   G  P N+
Sbjct: 387 AMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNI 446

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           TF++VL+ACAH G V++G   F  M+Q++G+ P   H  CM+DL GRAG L+EA + + +
Sbjct: 447 TFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLI-E 505

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
            I   P    W+A+LGAC++H N +L ++ A  LL ++P N   YVML+NIY+  GR+  
Sbjct: 506 TIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQD 565

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
              VR +M  +G+KK  G S +EV+++ ++F   D  HP   +I +YL+E+M + ++ GY
Sbjct: 566 AASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGY 625

Query: 490 VPESESAM----HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
            PE  SA+      + + E E  L +HSEKLA++FGLM T  G  I + KNLR+CVDCH+
Sbjct: 626 TPEVRSALVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHN 685

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           AIK+IS    REI VRD  RFH FK G CSC  YW
Sbjct: 686 AIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 211/424 (49%), Gaps = 29/424 (6%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           L+S      ++  A ++F  +P PDS  +NTLI   ++   +  +   +  M  + +   
Sbjct: 80  LISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMD 139

Query: 106 NYTFSAVIKSCAHLSILNLG--RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
            +T S +I +C     +N+G  R +H    V+G DS + V  AL+  Y+K+  +  AR++
Sbjct: 140 GFTLSGIITACG----INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRI 195

Query: 164 FDRMP-DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           F  +  D+  V+WNSM+  Y Q+    +A+ L+  M   G+  D  T   VL A   + D
Sbjct: 196 FHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQD 255

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN-VSKAREIFDMMSELNVIAWTAMIS 281
           +  G   H  ++  G   N  + + LI++Y++CG  +   R++FD +S  +++ W  MIS
Sbjct: 256 LLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMIS 315

Query: 282 GYGMH-GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           GY ++     EA+E F +++  G RP++ + V V+SAC++     +G       RQ +GL
Sbjct: 316 GYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQG-------RQVHGL 368

Query: 341 -----LPG--VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
                +P   +  +  ++ ++ + G L +A K + D + E    + + +M+     H   
Sbjct: 369 ALKLDIPSNRISVNNALIAMYSKCGNLRDA-KTLFDTMPEHNTVS-YNSMIAGYAQHGMG 426

Query: 394 DLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVEVVRNIMIQK-GLKKHVGYST 450
              + + + +L +    P +   +S + A A  GR++  ++  N+M QK G++   G+ +
Sbjct: 427 FQSLHLFQRMLEM-GFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFS 485

Query: 451 VEVD 454
             +D
Sbjct: 486 CMID 489



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 135/271 (49%), Gaps = 7/271 (2%)

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           VF   +D ++     L++ YAK + V+VA ++FD MP    V++N++I+ Y + G  + A
Sbjct: 65  VFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPA 124

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
             LF  MR+  ++ D  T   ++ AC    ++ L R +H   V  GLD  V +  +LI  
Sbjct: 125 FQLFLEMREAFLDMDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGNALITS 182

Query: 252 YARCGNVSKAREIFDMMSE-LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           Y++ G + +AR IF  +SE  + ++W +M+  Y  H  G++A+EL+  M   G+  +  T
Sbjct: 183 YSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFT 242

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
             +VL+A  +   +  G +  A + +  G          ++DL+ + G      + V D 
Sbjct: 243 LASVLTAFTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDE 301

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           I   P   +W  M+    +++  DL  E  E
Sbjct: 302 I-SNPDLVLWNTMISGYSLYE--DLSDEALE 329



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           L  C    D+  G+ +H   +   +  +  L+   + +Y++C  +S AR +FD   + NV
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNV 74

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
            ++  +IS Y    Y   A +LF  M     +P++V++  +++A A  G  Q   ++F  
Sbjct: 75  FSFNTLISAYAKESYVEVAHQLFDEM----PQPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 334 MRQEYGLLPG 343
           MR+ +  + G
Sbjct: 131 MREAFLDMDG 140


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/561 (39%), Positives = 331/561 (59%), Gaps = 8/561 (1%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI--IRNS 82
            +Q+H   +  G     S+   LL+L  + G++   Q+ F  +   D   +N+LI  + +S
Sbjct: 510  EQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADS 569

Query: 83   KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
            + +   +++  +  M+ +   P+  TF  ++ + + LS+  LG+ +H  V      +D  
Sbjct: 570  EPSM-LEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTA 628

Query: 143  VQAALVNFYAKSNNVDVARKVFDRMPDKS-VVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            ++ AL+  Y K  ++     +F RM D+   V+WNSMISGY  N    +A+ +   M   
Sbjct: 629  IENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQK 688

Query: 202  GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
            G   D  T   VL+ACA +  ++ G  VH   V   L+ ++V+ ++L++MYA+CG +  A
Sbjct: 689  GQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYA 748

Query: 262  REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
               F+MM   N+ +W +MISGY  HG+GT++++LF +M+  G  P++VTFV VLSAC+HA
Sbjct: 749  SRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHA 808

Query: 322  GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
            GLV EG   F SM + YGL P +EH  CMVDL GR G LN+   F+   +  KP   +W 
Sbjct: 809  GLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQ-MPVKPNVLIWR 867

Query: 382  AMLGAC--KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
             +LGAC     +N  LG   AE LL +EP N  +Y++LSN+YA  G+ D V   R  M +
Sbjct: 868  TVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRK 927

Query: 440  KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
              +KK  G S V +    ++F  GDKSHP  + IY+ L EL G+ R AGY+PE+  A+++
Sbjct: 928  AFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALYD 987

Query: 500  LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
            LE E +E  L YHSEK+A+AF L R S  M IRI+KNLR+C DCHSA K+IS    R+I+
Sbjct: 988  LEGESKEELLSYHSEKIAVAFVLTRPSK-MPIRILKNLRVCGDCHSAFKYISQIVERQIV 1046

Query: 560  VRDRLRFHHFKRGSCSCLDYW 580
            +RD  RFHHF+ G CSC D+W
Sbjct: 1047 LRDSNRFHHFENGKCSCGDFW 1067



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 159/316 (50%), Gaps = 9/316 (2%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           L+Q+   +  +G+     + + L+S    AG I YA+ IF  +   +    N LII   +
Sbjct: 303 LEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVR 362

Query: 84  ANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCAHLSILNLGR----AVHCHVFVSGY- 137
                +++  +  M  S  ++P++Y    ++ +     +L  G+     VH  +  SG  
Sbjct: 363 QKRGEEAVELFMEMKDSVELNPNSYMI--ILTAFPEFHVLENGKRKGSEVHAFLIRSGLL 420

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
           ++ + +   L+N YAK   ++ A  VF  M +K  V WNSMI+G +QN    EA+  F  
Sbjct: 421 NAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQE 480

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           MR   + P + T +  L++CA LG I +G  +H   +  GLD++V ++ +L+ +Y  CG 
Sbjct: 481 MRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGY 540

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYG-MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
           V + ++ F +M + + ++W ++I           EAVE F  M   G  PN VTF+ +L+
Sbjct: 541 VKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILA 600

Query: 317 ACAHAGLVQEGHRVFA 332
           A +   L + G ++ A
Sbjct: 601 AVSSLSLHELGKQIHA 616



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 196/416 (47%), Gaps = 17/416 (4%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           K  +++H  L   G+     +   L+++    G +   +++F  +P  +   ++ LI   
Sbjct: 90  KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGY 149

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI--LNLGRAVHCHVFVSGYDS 139
           ++     ++   +R+M+     P++Y F +VI++C       L  G  +H  +  + Y +
Sbjct: 150 TRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVN 209

Query: 140 DLHVQAALVNFYAKS-NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
           D+     L++ Y  +   VD AR+ FD +  +++V+ NSMIS Y Q G A  A  +F+ M
Sbjct: 210 DVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTM 269

Query: 199 RDF----GVNPDSTTCVCVLAACAQLGD--IDLGRWVHEFIVGQGLDVNVVLATSLINMY 252
           +      G+ P+  T   +++A   L +  + L   +   +   G   ++ + ++L++ +
Sbjct: 270 QKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGF 329

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
           A+ G++  A+ IF  MS  NV++   +I G      G EAVELF  M+   V  N  +++
Sbjct: 330 AKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMK-DSVELNPNSYM 388

Query: 313 AVLSACAHAGLVQEGHR----VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
            +L+A     +++ G R    V A + +   L   +     +++++ + G +N+A    +
Sbjct: 389 IILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFR 448

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
             + +      W +M+     +K F   V+  + +   E   P ++ M+S + + A
Sbjct: 449 --LMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELY-PSNFTMISALSSCA 501


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/630 (35%), Positives = 336/630 (53%), Gaps = 71/630 (11%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI-- 78
           LKP +QVH    V+G+     + + L+ +      I  A R+F  +  PD   ++ L+  
Sbjct: 130 LKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAA 189

Query: 79  ------IRNSKANFS---------------------------TDSLLFYRRMIVSNISPS 105
                 +  +K  FS                           ++++L +  M +    P 
Sbjct: 190 YARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPD 249

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
             T S+V+ +   L  L +G  +H +V   G  SD  V +AL++ Y K +      +VFD
Sbjct: 250 GTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFD 309

Query: 166 RMP-----------------------------------DKSVVAWNSMISGYEQNGFAKE 190
           +M                                    + +VV+W SMI+   QNG   E
Sbjct: 310 QMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIE 369

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ LF  M+  GV P+S T  C+L AC  +  +  G+  H F + +G+  +V + ++LI+
Sbjct: 370 ALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALID 429

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MYA+CG +  +R  FD +   N++ W A+I+GY MHG   EA+E+F  M+  G +P+ ++
Sbjct: 430 MYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIIS 489

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           F  VLSAC+ +GL +EG   F SM  +YG+   VEH+ CMV L  RAG L +AY  ++  
Sbjct: 490 FTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRR- 548

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
           +   P   VW A+L +C++H N  LG   AE L  +EP NPG+Y++LSNIYA  G  + V
Sbjct: 549 MPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEV 608

Query: 431 EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
             VR++M  KGL+K+ G S +EV  K ++   GDKSHP   +I + LD+L    ++ GY 
Sbjct: 609 NRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYF 668

Query: 491 PESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFI 550
           PE    + ++EE+++E  L  HSEKLA+ FGL+ T PG  ++++KNLR+C DCH  IKFI
Sbjct: 669 PEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFI 728

Query: 551 SVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S    REI VRD  RFHHFK G+CSC DYW
Sbjct: 729 SSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 205/450 (45%), Gaps = 75/450 (16%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L   +Q HAH++  G      + TKLLS   +      A  +   +P P+ F F+TLI  
Sbjct: 29  LSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYA 88

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            SK +    +L  + +M+   + P N    + +K+CA LS L   R VH    VSG+DSD
Sbjct: 89  FSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSD 148

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
             VQ++LV+ Y K N +  A +VFDRM +  VV+W+++++ Y + G   EA  LF+ M D
Sbjct: 149 SFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGD 208

Query: 201 FGVN-----------------------------------PDSTTCVCVLAACAQLGDIDL 225
            GV                                    PD TT   VL A   L D+ +
Sbjct: 209 SGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVM 268

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS---------------- 269
           G  +H +++ QGL  +  ++++LI+MY +C   S+  ++FD M                 
Sbjct: 269 GILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSR 328

Query: 270 -------------------ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
                              ELNV++WT+MI+    +G   EA+ELF  M+  GV+PN+VT
Sbjct: 329 NGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVT 388

Query: 311 FVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
              +L AC +   +  G      S+R+  G+   V     ++D++ + G + +A +   D
Sbjct: 389 IPCLLPACGNIAALMHGKAAHCFSLRR--GISTDVYVGSALIDMYAKCGRI-QASRICFD 445

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
            I  K     W A++    MH      +E+
Sbjct: 446 GIPTKNL-VCWNAVIAGYAMHGKAKEAMEI 474


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/562 (41%), Positives = 337/562 (59%), Gaps = 13/562 (2%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           Q+HAH+I  G        + L++         +A+++F  +P+P +  +N +I   S  +
Sbjct: 75  QLHAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNP-TICYNAMISGYSFNS 133

Query: 86  FSTDSLLFYRRM-------IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
               ++  +R+M       +  +++ +  T  +++  C+  + L +G  +H      G+ 
Sbjct: 134 KPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFV 193

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
           +DL V  +LV  Y K   V++ARKVFD M  + ++ WN+MISGY QNG A+  + +++ M
Sbjct: 194 TDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEM 253

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
           +  GV+ D+ T + V++ACA LG   +GR V   I  +G   N  L  +L+NMYARCGN+
Sbjct: 254 KLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNL 313

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
           ++ARE+FD   E +V++WTA+I GYG+HG+G  A+ELF  M    VRP+   FV+VLSAC
Sbjct: 314 TRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSAC 373

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           +HAGL   G   F  M ++YGL PG EH+ C+VDL GRAG L EA   +K  +  KP  A
Sbjct: 374 SHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKS-MKVKPDGA 432

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
           VW A+LGACK+HKN ++     +H++ +EP N G+YV+LSNIY  A  ++ V  VR +M 
Sbjct: 433 VWGALLGACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMR 492

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
           ++ L+K  GYS VE   K  LF  GD SHP T +IY+ LDEL    +E    P +E    
Sbjct: 493 ERKLRKDPGYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDELESLVKEVH--PPNEKC-- 548

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
           +   EE       HSEKLA+AF L+ T  G  I ++KNLR+CVDCH  IK +S   NR+ 
Sbjct: 549 QGRSEELLIGTGVHSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSKIVNRQF 608

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           IVRD  RFHHF+ G CSC DYW
Sbjct: 609 IVRDATRFHHFRDGICSCKDYW 630



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/392 (31%), Positives = 211/392 (53%), Gaps = 17/392 (4%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N  + + SK     ++L  YR M+ S+  P+ +TF  ++KSCA LS+      +H HV 
Sbjct: 22  WNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHVI 81

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
            +G   D + +++L+N YAK +    ARKVFD MP+ + + +N+MISGY  N     A+ 
Sbjct: 82  RTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNPT-ICYNAMISGYSFNSKPLHAVC 140

Query: 194 LFNLMR-------DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
           LF  MR       D  VN ++ T + +++ C+    + +G  +H   V  G   ++ +A 
Sbjct: 141 LFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVAN 200

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           SL+ MY +CG V  AR++FD M   ++I W AMISGY  +G+    +E++  M+  GV  
Sbjct: 201 SLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSA 260

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQE-YGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           + VT + V+SACA+ G    G  V   + +  +G  P + +   +V+++ R G L  A +
Sbjct: 261 DAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRN--ALVNMYARCGNLTRA-R 317

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SVEPENPGHYVMLSNIYAL 423
            V D  GEK   + WTA++G   +H + ++ +E+ + ++  +V P+      +LS   + 
Sbjct: 318 EVFDRSGEKSVVS-WTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSAC-SH 375

Query: 424 AGRMDR-VEVVRNIMIQKGLKKHVGYSTVEVD 454
           AG  DR +E  + +  + GL+    + +  VD
Sbjct: 376 AGLTDRGLEYFKEMERKYGLQPGPEHYSCVVD 407



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
             AWN+ +    +    +EA+ L+  M      P++ T   +L +CA L        +H 
Sbjct: 19  TTAWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHA 78

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
            ++  G   +    +SLIN YA+C     AR++FD M     I + AMISGY  +     
Sbjct: 79  HVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPN-PTICYNAMISGYSFNSKPLH 137

Query: 292 AVELFHRMRAH-------GVRPNNVTFVAVLSACAHA 321
           AV LF +MR          V  N VT ++++S C+ A
Sbjct: 138 AVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVA 174


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/532 (36%), Positives = 321/532 (60%), Gaps = 2/532 (0%)

Query: 49  LVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYT 108
           + C  G ++ A+ +F  +PS D   +  LI   ++     +++     M+ +   P+ +T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           F++++K+       ++G  +H       +D D++V +AL++ YA+   +D+A  VFDR+ 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
            K+ V+WN++I+G+ +    +  +  F  M+  G      T   + +A A++G ++ GRW
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           VH  ++  G  +   +  +++ MYA+ G++  AR++FD M + +++ W  M++    +G 
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 240

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
           G EAV  F  +R  G++ N +TF++VL+AC+H GLV+EG   F  M ++Y + P ++H+V
Sbjct: 241 GKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYF-DMMKDYNVQPEIDHYV 299

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
             VDL GRAGLL EA  FV  +  E P  AVW A+LGAC+MHKN  +G   A+H+  ++P
Sbjct: 300 SFVDLLGRAGLLKEALIFVFKMPME-PTAAVWGALLGACRMHKNAKMGQYAADHVFELDP 358

Query: 409 ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHP 468
           ++ G  V+L NIYA  G+ +    VR +M   G+KK    S V+++   ++F   D +HP
Sbjct: 359 DDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHP 418

Query: 469 NTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPG 528
            + +IY+  +E+  R ++AGYVP +   +  + E+ERE  L+YHSEK+ALAF L+    G
Sbjct: 419 KSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAG 478

Query: 529 MTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            +IRI+KN+R+C DCHSA K++S    REI+VRD  RFHHF  GSCSC DYW
Sbjct: 479 ASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 123/263 (46%), Gaps = 1/263 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+HA  +   +     + + LL +      +  A  +F  + S +   +N LI   ++ 
Sbjct: 78  EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARK 137

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
                +L+ +  M  +    +++T+S++  + A +  L  GR VH H+  SG      V 
Sbjct: 138 ADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVG 197

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             ++  YAKS ++  ARKVFDRM  + +V WN+M++   Q G  KEA+  F  +R  G+ 
Sbjct: 198 NTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQ 257

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR-E 263
            +  T + VL AC+  G +  G+   + +    +   +    S +++  R G + +A   
Sbjct: 258 LNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIF 317

Query: 264 IFDMMSELNVIAWTAMISGYGMH 286
           +F M  E     W A++    MH
Sbjct: 318 VFKMPMEPTAAVWGALLGACRMH 340


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/449 (42%), Positives = 295/449 (65%), Gaps = 1/449 (0%)

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           VF    + D+     +++ YA +  VD+AR+VF+ M D+   +W+SM+S Y +   +K+A
Sbjct: 128 VFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDA 187

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           + L+  MR   VNPD TT V VL+AC+ +G + +G  VH+F+   G++++V L T+LI+M
Sbjct: 188 LELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDM 247

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           YA+CG++  +  +F  M   +V+ W++MI G   HG+G +A+ LF RM + G++PN VTF
Sbjct: 248 YAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTF 307

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           + VL +C H GLV +G + F+SM   +G+ P V+H+ CMVDL GR+G + EA + ++D+ 
Sbjct: 308 IGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMP 367

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
            E P   +W A+LGAC+++KN ++  E    L  ++P   GHYV+LSNIYA A   + V 
Sbjct: 368 FE-PDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVA 426

Query: 432 VVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVP 491
            +R  + ++ +++  G S++E     + F  GD+SHP + EIY+ L E+M R R+AGY P
Sbjct: 427 EMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKP 486

Query: 492 ESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFIS 551
            +   + +++E+ +E +L  HSEKLA+AFGL+ T  G T+RI KNLR C DCHSAIK I+
Sbjct: 487 MTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIA 546

Query: 552 VATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +   R++I+RDR RFHHF  G CSC DYW
Sbjct: 547 LLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 132/249 (53%), Gaps = 2/249 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+ +F  +   D+F +++++   +K   S D+L  +R M  + ++P   T  +V+
Sbjct: 151 GEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVL 210

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
            +C+ +  L +G  VH  V  +G + D+ +  AL++ YAK  +++ + +VF  MP K V+
Sbjct: 211 SACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVL 270

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEF 232
            W+SMI G   +GF  +A+ LF+ M   G+ P+  T + VL +C  LG +  G ++    
Sbjct: 271 TWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSM 330

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIF-DMMSELNVIAWTAMISGYGMHGYGTE 291
            V  G+   V     ++++  R G++ +A+++  DM  E + + W A++    ++     
Sbjct: 331 SVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEV 390

Query: 292 AVELFHRMR 300
           A E   ++R
Sbjct: 391 AEEAMAKLR 399



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 77/160 (48%), Gaps = 5/160 (3%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L+ +    G I  + R+F  +P  D   ++++II  +   F  D+L  + RM+   + 
Sbjct: 242 TALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQ 301

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHV-FVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
           P+  TF  V+ SC HL +++ G+     +  V G    +     +V+   +S +++ A++
Sbjct: 302 PNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQ 361

Query: 163 VFDRMP-DKSVVAWNSMISG---YEQNGFAKEAIGLFNLM 198
           +   MP +   V W +++     Y+    A+EA+    ++
Sbjct: 362 LIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVL 401


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/538 (41%), Positives = 328/538 (60%), Gaps = 15/538 (2%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIV-SNISPSNYTFSA 111
           + YA R+F  + +P+SF++N LI    ++   +   +++L Y  M+  S+  P N+TF  
Sbjct: 72  LNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPF 131

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           V+K+CA+L  L  G+  H H+   G+ SD+++  +L++FYA   +++ A+ VFD+MP +S
Sbjct: 132 VLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRS 191

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           +V+WN+MI  +   G  + A+ LF   +     PD  T   V+ ACA L  + LG W H 
Sbjct: 192 LVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHA 251

Query: 232 FIVGQ-GLDV---NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
           F++   G+ V   +V++  SL++MY +CG++  A +IF+ M + +V +W +MI G+ MHG
Sbjct: 252 FLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHG 311

Query: 288 YGTEAVELFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
            G  A+E F RM R     PN++TFV VLSAC H  +V EG + F  M  EY + P +EH
Sbjct: 312 KGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEH 371

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC-KMHKNFDLGVEVAEHLL- 404
           + C+VD+  RAGL++EA + V   +  KP   +W ++L +C K + + +L   +A  +L 
Sbjct: 372 YGCLVDILARAGLIDEALELVAS-MPMKPDVVIWRSLLDSCCKKNASVELSENIARQILE 430

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
           S E ++ G YV+LS +YA A R + V +VR +M   G+ K  G S +EVD   + F  GD
Sbjct: 431 SEEADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGD 490

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESA--MHELEEEEREYSLRYHSEKLALAFGL 522
            SHP T EIYQ L+ +  R    GY P+   A  + EL   +R+ SLR HSE+LA+A GL
Sbjct: 491 TSHPQTKEIYQVLNVVEERIDSTGYKPDYSQAPMVDELNTSKRD-SLRLHSERLAIALGL 549

Query: 523 MRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +   PGM IRI KNLR+C DCH     IS   N EIIVRDR+RFHHFK GSCSC+DYW
Sbjct: 550 LNLKPGMPIRIFKNLRVCDDCHKVTGLISEIFNVEIIVRDRVRFHHFKDGSCSCMDYW 607



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 150/301 (49%), Gaps = 10/301 (3%)

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           +  C  +S L    A+     +  + + L + + +++F +  ++++ A +VFD++ + + 
Sbjct: 29  LNECKDMSQLKQIHALSLRSTLPNHSTTLFLYSRILHF-SSLHDLNYAYRVFDQVDNPNS 87

Query: 173 VAWNSMISGYEQNG---FAKEAIGLFNLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
             WN +I    Q+      +EAI L+N M +     PD+ T   VL ACA L  +  G+ 
Sbjct: 88  FMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQ 147

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
            H  ++  G   +V +  SLI+ YA CG++  A+ +FD M + ++++W AMI  + + G 
Sbjct: 148 AHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGE 207

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
              A++LF + +     P+  T  +V++ACA    +  G    A + +  G+    +H +
Sbjct: 208 FETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVL 267

Query: 349 C---MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
               ++D++ + G L+ A +  + +  +K     W +M+    MH   +L +E  E ++ 
Sbjct: 268 VNNSLLDMYCKCGSLDIATQIFEGM--QKHDVTSWNSMILGFAMHGKGELALECFERMIR 325

Query: 406 V 406
           +
Sbjct: 326 I 326



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 10/287 (3%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P +  +  +LKA   L  L   +Q HAHL+  G+     +   L+      G +  A+ +
Sbjct: 124 PDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNV 183

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P      +N +I           +L  + +       P  YT  +VI +CA L  L
Sbjct: 184 FDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCAL 243

Query: 123 NLGRAVHCHVF----VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           +LG   H  +     VS     + V  +L++ Y K  ++D+A ++F+ M    V +WNSM
Sbjct: 244 SLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSM 303

Query: 179 ISGYEQNGFAKEAIGLFN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ- 236
           I G+  +G  + A+  F  ++R     P+S T V VL+AC     ++ GR   + +V + 
Sbjct: 304 ILGFAMHGKGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEY 363

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISG 282
            ++  +     L+++ AR G + +A E+   M  + +V+ W +++  
Sbjct: 364 KIEPQLEHYGCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDS 410


>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 554

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/562 (38%), Positives = 334/562 (59%), Gaps = 20/562 (3%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCD--AGFITYAQRIFFCIPSP-DSFLFNTLIIRNS 82
           ++HA LI  G  ++   L     L C        YA  +   +P+P D F +NT+I   S
Sbjct: 6   KLHATLIKTGQHQNPHSLRPFF-LTCSNYPAAARYAATVLLRLPTPPDPFSYNTIIKHVS 64

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
                T ++  +  M  +++   ++TF  ++K   H  + +L       +F  G+D+++ 
Sbjct: 65  ----PTGAISLFSHMHRNSVPFDHFTFPLILKHHHHHLLHSL-------IFKLGFDTNIF 113

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM---- 198
           VQ AL+N Y    ++DVA K+FD M  + +V+W+++IS   +N    EA+ +F  M    
Sbjct: 114 VQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSVFQQMQMGH 173

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
           RD     D    + V++A + LG I+LG WVH FIV  G+ + V L T+LINMY+RCG +
Sbjct: 174 RDIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPLGTALINMYSRCGLI 233

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
            ++ ++FD M E NV+ WTA+I+G  +HG   EA+++F+ M+  G++P+   F+ VL AC
Sbjct: 234 DRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLKPDGALFIGVLVAC 293

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           +H GLV++G RVF SMR E+G+ P +EH+ CMVDL GRAGL+ EA+ FV++ +  KP   
Sbjct: 294 SHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFDFVEE-MPLKPNSV 352

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
           +W  +LGAC  H +  L  +  E ++ ++P + G YV+LSN Y   G       +RN M 
Sbjct: 353 IWRTLLGACVNHNHLGLAEKARERIIELDPYHDGDYVLLSNAYGRVGNWGGKAGLRNSMK 412

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498
           Q  + K  G S V +DQ  + F  GD  HP   EI ++L  ++   +  GY P + S +H
Sbjct: 413 QNRIVKEPGLSFVHIDQVVHEFVSGDHVHPQWEEITKFLASIIDTVKLGGYTPNTSSVLH 472

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
           ++++EE+E+ L YHSEKLA+AF L+      TIR++KNLR+C DCH  +K  S   +R+I
Sbjct: 473 DIQDEEKEHCLGYHSEKLAVAFVLLYHRDRRTIRVIKNLRICYDCHDFMKHASGIFDRDI 532

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           I+RDR RFHHF +G CSC D+W
Sbjct: 533 IIRDRNRFHHFSKGLCSCQDFW 554


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/555 (37%), Positives = 329/555 (59%), Gaps = 1/555 (0%)

Query: 26   QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
            Q+HA  + AG      + T L+ +   +G +  A+ +F      D   +N ++     + 
Sbjct: 1029 QIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSG 1088

Query: 86   FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
                +L  Y  M  S    +  T +   K+   L  L  G+ +   V   G++ DL V +
Sbjct: 1089 DFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVIS 1148

Query: 146  ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
             +++ Y K   ++ AR++F+ +P    VAW +MISG  +NG  + A+  ++ MR   V P
Sbjct: 1149 GVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQP 1208

Query: 206  DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
            D  T   ++ AC+ L  ++ GR +H   V      +  + TSL++MYA+CGN+  AR +F
Sbjct: 1209 DEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLF 1268

Query: 266  DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
               +   + +W AMI G   HG   EA++ F  M++ GV P+ VTF+ VLSAC+H+GLV 
Sbjct: 1269 KRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVS 1328

Query: 326  EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            E +  F SM++ YG+ P +EH+ C+VD   RAG + EA K +  +  E  A +++  +L 
Sbjct: 1329 EAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASA-SMYRTLLN 1387

Query: 386  ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
            AC++  + + G  VAE LL++EP +   YV+LSN+YA A + + V   RN+M +  +KK 
Sbjct: 1388 ACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKD 1447

Query: 446  VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
             G+S V++  K +LF  GD+SH  T+ IY  ++ +M R RE GY+P+++ A+ ++EEE++
Sbjct: 1448 PGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDK 1507

Query: 506  EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
            E SL YHSEKLA+A+GLM+T P  T+R++KNLR+C DCH+AIK+IS    RE+++RD  R
Sbjct: 1508 ECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANR 1567

Query: 566  FHHFKRGSCSCLDYW 580
            FHHF+ G CSC DYW
Sbjct: 1568 FHHFRSGVCSCGDYW 1582



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 192/389 (49%), Gaps = 8/389 (2%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            +Q+H  ++ +G  +  S+   L+++    G ++ A+ +F+ +   D   +NT+I   + +
Sbjct: 926  KQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALS 985

Query: 85   NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI-LNLGRAVHCHVFVSGYDSDLHV 143
                 S+  +  ++   + P  +T ++V+++C+ L    +L   +H     +G   D  V
Sbjct: 986  GLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFV 1045

Query: 144  QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
               L++ Y+KS  ++ A  +F       + +WN+M+ GY  +G   +A+ L+ LM++ G 
Sbjct: 1046 STTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGE 1105

Query: 204  NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
              +  T      A   L  +  G+ +   +V +G ++++ + + +++MY +CG +  AR 
Sbjct: 1106 RANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARR 1165

Query: 264  IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
            IF+ +   + +AWT MISG   +G    A+  +H MR   V+P+  TF  ++ AC+    
Sbjct: 1166 IFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTA 1225

Query: 324  VQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
            +++G ++ A +++      P V     +VD++ + G + +A    K     + A   W A
Sbjct: 1226 LEQGRQIHANTVKLNCAFDPFV--MTSLVDMYAKCGNIEDARGLFKRTNTSRIAS--WNA 1281

Query: 383  MLGACKMHKNFDLGVEVAEHLLS--VEPE 409
            M+     H N +  ++  E + S  V P+
Sbjct: 1282 MIVGLAQHGNAEEALQFFEEMKSRGVTPD 1310



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 128/251 (50%), Gaps = 5/251 (1%)

Query: 21   LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
            LK  +Q+ A ++  G+     +++ +L +    G +  A+RIF  IPSPD   + T+I  
Sbjct: 1125 LKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISG 1184

Query: 81   NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
              +      +L  Y  M +S + P  YTF+ ++K+C+ L+ L  GR +H +        D
Sbjct: 1185 CVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFD 1244

Query: 141  LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
              V  +LV+ YAK  N++ AR +F R     + +WN+MI G  Q+G A+EA+  F  M+ 
Sbjct: 1245 PFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKS 1304

Query: 201  FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ---GLDVNVVLATSLINMYARCGN 257
             GV PD  T + VL+AC+  G +        F   Q   G++  +   + L++  +R G 
Sbjct: 1305 RGVTPDRVTFIGVLSACSHSGLVSEA--YENFYSMQKIYGIEPEIEHYSCLVDALSRAGR 1362

Query: 258  VSKAREIFDMM 268
            + +A ++   M
Sbjct: 1363 IREAEKVISSM 1373



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 153/300 (51%), Gaps = 20/300 (6%)

Query: 97   MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
            MI S ++    TF  ++   A L+ L LG+ +H  V  SG D  + V   L+N Y K+ +
Sbjct: 897  MINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGS 956

Query: 157  VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLA 215
            V  AR VF +M +  +V+WN+MISG   +G  + ++G+F +L+R  G+ PD  T   VL 
Sbjct: 957  VSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRG-GLLPDQFTVASVLR 1015

Query: 216  ACAQL-GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
            AC+ L G   L   +H   +  G+ ++  ++T+LI++Y++ G + +A  +F      ++ 
Sbjct: 1016 ACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLA 1075

Query: 275  AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
            +W AM+ GY + G   +A+ L+  M+  G R N +T     +A A  GLV         +
Sbjct: 1076 SWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLAN--AAKAAGGLV--------GL 1125

Query: 335  RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK-----FVKDVIGEKPAP--AVWTAMLGAC 387
            +Q   +   V      +DLF  +G+L+   K       + +  E P+P    WT M+  C
Sbjct: 1126 KQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGC 1185



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 10/223 (4%)

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
           ++++     S L LG+  H  +  SG+  D  +   L+  Y+K  ++  ARK+FD  PD 
Sbjct: 631 SILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDT 690

Query: 171 S--VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           S  +V WN+++S +     A++   LF L+R   V+    T   V   C           
Sbjct: 691 SRDLVTWNAILSAHADK--ARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAES 748

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H + V  GL  +V +A +L+N+YA+ G + +AR +FD M   +V+ W  M+  Y   G 
Sbjct: 749 LHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGL 808

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
             EA+ LF      G+RP++VT       C  A +V+    V 
Sbjct: 809 EYEALLLFSEFNRTGLRPDDVTL------CTLARVVKSKQNVL 845



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 141/279 (50%), Gaps = 17/279 (6%)

Query: 172  VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
            V+AWN  +S + Q G   EA+  F  M +  V  D  T V +L+  A L  ++LG+ +H 
Sbjct: 871  VIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHG 930

Query: 232  FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
             +V  GLD  V +   LINMY + G+VS+AR +F  M+E+++++W  MISG  + G    
Sbjct: 931  IVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEEC 990

Query: 292  AVELFHRMRAHGVRPNNVTFVAVLSACAHAG----LVQEGHRVFASMRQEYGLLPGVEHH 347
            +V +F  +   G+ P+  T  +VL AC+  G    L  + H    +   + G++      
Sbjct: 991  SVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIH----ACAMKAGVVLDSFVS 1046

Query: 348  VCMVDLFGRAGLLNEA-YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406
              ++D++ ++G + EA + FV     +    A W AM+    +  +F   + +  ++L  
Sbjct: 1047 TTLIDVYSKSGKMEEAEFLFVNQ---DGFDLASWNAMMHGYIVSGDFPKALRL--YILMQ 1101

Query: 407  EPENPGHYVMLSNIYALAG---RMDRVEVVRNIMIQKGL 442
            E     + + L+N    AG    + + + ++ +++++G 
Sbjct: 1102 ESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGF 1140



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 167/384 (43%), Gaps = 29/384 (7%)

Query: 9   PAYEAILK---AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P + +IL+   A   L   ++ HA ++ +G+   R +   L+++    G ++ A+++F  
Sbjct: 627 PQWFSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDT 686

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
            P     L     I ++ A+ + D    +R +  S +S + +T + V K C   +  +  
Sbjct: 687 TPDTSRDLVTWNAILSAHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAA 746

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
            ++H +    G   D+ V  ALVN YAK   +  AR +FD M  + VV WN M+  Y   
Sbjct: 747 ESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDT 806

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G   EA+ LF+     G+ PD  T +C LA   +    ++  W  + +   G        
Sbjct: 807 GLEYEALLLFSEFNRTGLRPDDVT-LCTLARVVK-SKQNVLEWQLKQLKAYG-------- 856

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           T L  MY    + S            +VIAW   +S +   G   EAV+ F  M    V 
Sbjct: 857 TKLF-MYDDDDDGS------------DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVA 903

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
            + +TFV +LS  A    ++ G ++   + +  GL   V    C+++++ + G ++ A  
Sbjct: 904 CDGLTFVVMLSVVAGLNCLELGKQIHGIVVRS-GLDQVVSVGNCLINMYVKTGSVSRART 962

Query: 366 FVKDVIGEKPAPAVWTAMLGACKM 389
               +   +     W  M+  C +
Sbjct: 963 VFWQM--NEVDLVSWNTMISGCAL 984


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/579 (37%), Positives = 341/579 (58%), Gaps = 5/579 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P S  +   L A  RL  L   + V      AGYG    + + +L+L    G +  A +
Sbjct: 100 RPDSTTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVK 159

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   D   ++T++     A     ++  Y RM    +         V+++CA    
Sbjct: 160 VFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGD 219

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
             +G +VH ++       D+ +  +LV+ YAK+   D AR+VF+ MP ++ V+W+++IS 
Sbjct: 220 ARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQ 279

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             Q G A EA+GLF +M+  G++P+S   V  L AC+ LG + LG+ +H FI+ + L+++
Sbjct: 280 LAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFIL-RTLELD 338

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            ++ T++I+MY++CG++S A+ +FD +   ++I+W  MI+  G HG G +A+ LF  M+ 
Sbjct: 339 RMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKR 398

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
           + VRP++ TF ++LSA +H+GLV+EG   F  M  EYG+ PG +H VC+VDL  R+GL+ 
Sbjct: 399 NEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVE 458

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA   V   +  KP  ++  A+L  C  +   +LG   AE +L ++P + G   ++SN+Y
Sbjct: 459 EANGLVAS-LHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLY 517

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A A    +V  VR +M   G KK  G S++E+    + F M D+SHP   +I Q + +L 
Sbjct: 518 AAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLD 577

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              R+ GY+P++E   H+LEE  +E  L  HSE+LA AFGL+ TSPG  + ++KNLR+C 
Sbjct: 578 SEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVCG 637

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH AIK++S   +REI+VRD  RFHHFK G+CSC DYW
Sbjct: 638 DCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 144/286 (50%), Gaps = 10/286 (3%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV-QAALVNFYAKSNNVDVARKVFDRMPDK 170
           ++ SCA L  L     +H  + VS   S  H+  + L   YA++ ++  A       P  
Sbjct: 9   LLSSCAALRTLT---RLHALLIVSSSASCHHILSSCLATAYARAGDLAAAESTLATAPTS 65

Query: 171 --SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
             S+ AWN++++ + +     EA+ +F  +      PDSTT    L+ACA+LGD+  G  
Sbjct: 66  PSSIPAWNALLAAHSRGASPHEALRVFRALPP-AARPDSTTFTLALSACARLGDLATGEV 124

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           V +   G G   ++ + +S++N+YA+CG +  A ++FD M + + + W+ M++G+   G 
Sbjct: 125 VTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQ 184

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             +A+E++ RMR  G+  + V  V V+ ACA  G  + G  V   + + + +   V    
Sbjct: 185 PVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLR-HAMQMDVVIST 243

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
            +VD++ + GL ++A +  +  +        W+A++     + N D
Sbjct: 244 SLVDMYAKNGLFDQARRVFE--LMPHRNDVSWSALISQLAQYGNAD 287


>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
 gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/495 (41%), Positives = 298/495 (60%), Gaps = 3/495 (0%)

Query: 88  TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL 147
           T+    Y+ M    +     + S VI+    +  L  G  VH  +   G+ SD  +   L
Sbjct: 6   TEGFFMYQEMRKKGLRADPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSLLLTNL 65

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN--LMRDFGVNP 205
           ++ Y+  +    A KVFD M  +  +AWN +IS Y +N   ++ + +F+  L  + G  P
Sbjct: 66  MDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGELGCEP 125

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           D  TC+ +L ACA LG ++ G  VH  IV +G D    L  SLI MY++ GN+ KA  +F
Sbjct: 126 DDVTCLLLLQACANLGALEFGEKVHGHIVERGYDNATNLCNSLIAMYSQFGNLDKAFGVF 185

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
             M   NV+ W+A+ISG  M+GYG EA+  F  M   GV P+++TF  VLSAC++ GLV 
Sbjct: 186 KGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSACSNCGLVD 245

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           +G  +FA M +E+G++P + H+ CMVDL GRAG L++AY+ +   +  KP   +W  +LG
Sbjct: 246 KGMIIFARMSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMS-MRVKPDSTIWRTLLG 304

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           AC++H+N  LG  V EHL+ ++ +  G YV+L N+Y+      +V  +R  M +KG++  
Sbjct: 305 ACRIHRNVILGEHVVEHLIELKAQEAGDYVLLFNLYSSVDNWKKVTELRKFMKEKGIQTT 364

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
              S++E+  K + F + D SHP  +EIY+ LDE+  + + AGYV E  S +  L+ EE+
Sbjct: 365 PASSSIELKGKVHEFVVDDVSHPQKDEIYEMLDEISKQLKIAGYVAEITSELPNLDAEEK 424

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
            Y L YHSEKLA+AFG++ T PG TIRI KNLR+CVDCH+  K +S   NR++I+ D  R
Sbjct: 425 RYVLSYHSEKLAIAFGVLATPPGTTIRIAKNLRICVDCHNFAKILSGVYNRQVIITDHTR 484

Query: 566 FHHFKRGSCSCLDYW 580
           FHHF+ G CSC DYW
Sbjct: 485 FHHFRGGHCSCNDYW 499



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 139/272 (51%), Gaps = 16/272 (5%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNS 82
           +QVHA ++  G+     +LT L+ L  +CD G  + A ++F  +   D+  +N LI    
Sbjct: 44  EQVHARILSDGHQSDSLLLTNLMDLYSLCDKG--SEACKVFDEMRQRDTIAWNVLISCYM 101

Query: 83  KANFSTDSLLFYRRMIVSNI--SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
           +   + D L+ +  M+   +   P + T   ++++CA+L  L  G  VH H+   GYD+ 
Sbjct: 102 RNRRTRDVLVIFDGMLSGELGCEPDDVTCLLLLQACANLGALEFGEKVHGHIVERGYDNA 161

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
            ++  +L+  Y++  N+D A  VF  M +K+VV W+++ISG   NG+ +EAIG F  M  
Sbjct: 162 TNLCNSLIAMYSQFGNLDKAFGVFKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLK 221

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLG-----RWVHEFIVGQGLDVNVVLATSLINMYARC 255
            GV PD  T   VL+AC+  G +D G     R   EF    G+  N+     ++++  R 
Sbjct: 222 MGVLPDDLTFTGVLSACSNCGLVDKGMIIFARMSKEF----GIVPNIHHYGCMVDLLGRA 277

Query: 256 GNVSKARE-IFDMMSELNVIAWTAMISGYGMH 286
           G + +A + I  M  + +   W  ++    +H
Sbjct: 278 GQLHQAYQLIMSMRVKPDSTIWRTLLGACRIH 309


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/610 (36%), Positives = 346/610 (56%), Gaps = 36/610 (5%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P S     ++ A  +L+ L   ++V A++   G   ++ M+  L+ +    G I  A+R
Sbjct: 229 RPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKR 288

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F      +  L+NT++   ++   + ++L     M+     P   T  + I + A L  
Sbjct: 289 LFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVD 348

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS---- 177
           L  G+  H +V  +G +    +   +++ Y K    ++A +VFD M +K+VV+WNS    
Sbjct: 349 LFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAG 408

Query: 178 ---------------------------MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
                                      MISG  Q    ++AI LF  M+  G+  D  T 
Sbjct: 409 FIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTM 468

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           + + +AC  LG  +L +WVH +I   G+  ++ L T+L++M+ARCG+   A ++F+ M+E
Sbjct: 469 MGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTE 528

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            +V AWTA I    M G G  A  LF++M   GV+P+ V FV VL+AC+H G V++G  +
Sbjct: 529 RDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHI 588

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           F S+ +++G+ P +EH+ CMVDL GRAGLL EA+  +K +  E P   VW ++L AC++H
Sbjct: 589 F-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPME-PNDVVWGSLLAACRVH 646

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
           KN ++    AE +  + P+  G +V+LSNIYA AG+   V  VR  + +KG++K  G S+
Sbjct: 647 KNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSS 706

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLR 510
           V+V+   + F+ GD+SHP    I   L E+  R  +AG++P+  + + +++E+E+EY L 
Sbjct: 707 VQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLS 766

Query: 511 YHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
            HSEKLA+AFGL+ T   M IR+VKNLRMC DCHS  K  S+  NREIIVRD  RFH F+
Sbjct: 767 RHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFR 826

Query: 571 RGSCSCLDYW 580
           +G CSC DYW
Sbjct: 827 QGLCSCCDYW 836



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 176/314 (56%), Gaps = 8/314 (2%)

Query: 15  LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL---VCDAGFITYAQRIFFC----IP 67
           L+    L  L+Q+H  +   G  +  S LTKL++    +     + YA++ F      + 
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 68  SPDS-FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           S D+ F+ N+LI   S A    +++L Y RM+V  ++P++YTF  V+  C  ++    G 
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            VH  V   G + D+ +Q  L++FYA+  ++D   KVF+ M +++VV+W S+I GY +  
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGD 211

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
             KEA+ LF  M + G+ P S T VCV++ACA+L D+D+G  V  +I   GL +N V+  
Sbjct: 212 RPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVN 271

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           +L++MY +CG +  A+ +FD   + N++ +  ++S Y   G   EA+ +   M   G RP
Sbjct: 272 ALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRP 331

Query: 307 NNVTFVAVLSACAH 320
           + VT ++ +SA A 
Sbjct: 332 DRVTMLSAISASAQ 345



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 191/398 (47%), Gaps = 34/398 (8%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           QVH  ++  G      +   L+    + G + +  ++F  +   +   + +LI   ++ +
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGD 211

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
              +++  +  M+ + I PS+ T   VI +CA L  L++G  V  ++   G   +  +  
Sbjct: 212 RPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVN 271

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           ALV+ Y K   +D A+++FD   D+++V +N+++S Y + G A+EA+ + + M   G  P
Sbjct: 272 ALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRP 331

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           D  T +  ++A AQL D+  G+  H +++  GL+    +   +I+MY +CG    A  +F
Sbjct: 332 DRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVF 391

Query: 266 DMMSELNVIAWTAMISGYGMHG-------------------YGT------------EAVE 294
           D+MS   V++W ++ +G+  +G                   + T            +A+E
Sbjct: 392 DLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIE 451

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
           LF  M+  G++ + VT + + SAC + G  +    V   + +  G+   +  +  +VD+F
Sbjct: 452 LFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKN-GIPCDMRLNTALVDMF 510

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKN 392
            R G    A + V + + E+   A WTA +G   M  N
Sbjct: 511 ARCGDPQSAMQ-VFNKMTERDVSA-WTAAIGTMAMEGN 546



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 161/343 (46%), Gaps = 14/343 (4%)

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNF---YAKSNNVDVARKVF-----DRMPDKSVV 173
           LN  + +HC +  +G D        LVN     A   ++D ARK F     D   D ++ 
Sbjct: 38  LNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALF 97

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
             NS+I GY   G  +EAI L+  M   GV P+  T   VL+ C ++     G  VH  +
Sbjct: 98  MLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSV 157

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           V  GL+ +V +   LI+ YA CG++    ++F+ MSE NV++WT++I GY       EAV
Sbjct: 158 VKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAV 217

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
            LF  M   G+RP++VT V V+SACA    +  G RV A +  E GL         +VD+
Sbjct: 218 SLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYI-GELGLKLNKVMVNALVDM 276

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
           + + G ++ A +   + +       ++  +L            + + + +L   P  P  
Sbjct: 277 YMKCGAIDAAKRLFDECVDRN--LVLYNTILSNYARQGLAREALAILDEMLQQGPR-PDR 333

Query: 414 YVMLSNIYALAGRMDRV--EVVRNIMIQKGLKKHVGYSTVEVD 454
             MLS I A A  +D    +V    +I+ GL+       V +D
Sbjct: 334 VTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIID 376


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/556 (37%), Positives = 325/556 (58%), Gaps = 2/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           QQ+HAH+I +G      +   L++          + ++F       S  ++++I   ++ 
Sbjct: 74  QQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQN 133

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
                ++ ++ RMI  N+ P ++ F +  K+CA L   ++G++VHC V  +GYD D+ V 
Sbjct: 134 EEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVG 193

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ++LV+ YAK  ++  AR VFD MP ++VV+W+ MI GY Q G  +EA+ LF      G++
Sbjct: 194 SSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLD 253

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +  T   V+  C     ++LG+ +H        D++  + +SLI++Y++CG +  A  +
Sbjct: 254 VNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRV 313

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD +   N+  W AM+     H +  EA +LF +M   G+RPN +TF+ VL AC+HAGLV
Sbjct: 314 FDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLV 373

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           +EG + FA M++ Y + PG +H+  MVDL GRAG L EA   +K +  E P  +VW A +
Sbjct: 374 EEGKKYFALMKK-YEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTE-PTESVWGAFI 431

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
             C++H N DL    A+ +  +   + G +VMLSN YA AGR +     R ++  +G+KK
Sbjct: 432 TGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKK 491

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S +E   + + F+ GD+ H    EIYQ L++L      AGYV ++   + E+  EE
Sbjct: 492 ETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYVADTSFVLREVGSEE 551

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +  ++RYHSE+LA+AFGL+    G  IRI+KNLR+C DCH+AIKFIS  + R IIVRD  
Sbjct: 552 KNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKFISKLSGRVIIVRDNN 611

Query: 565 RFHHFKRGSCSCLDYW 580
           RFH F+ G CSC DYW
Sbjct: 612 RFHRFEDGKCSCADYW 627



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 7/161 (4%)

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ +H  I+  GL V  ++   LIN Y++      + ++F+     +   W+++IS +  
Sbjct: 73  GQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQ 132

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           +     A++ F RM    + P++  F +   ACA  G    G  V   +  + G    V 
Sbjct: 133 NEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHC-LVIKTGYDVDVF 191

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAML 384
               +VD++ + G + EA    ++V  E P   V  W+ M+
Sbjct: 192 VGSSLVDMYAKCGDIKEA----RNVFDEMPHRNVVSWSGMI 228


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/559 (37%), Positives = 330/559 (59%), Gaps = 7/559 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           ++VHA+ I  G   +  +   L+ +      + +    F C+   D   + T+I   ++ 
Sbjct: 369 KEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQN 428

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +++  +R++ V  +        +V+++C+ L   N  R +H +VF     +D+ +Q
Sbjct: 429 ECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-ADIMLQ 487

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            A+VN Y +  + D AR+ F+ +  K +V+W SMI+    NG   EA+ LF  ++   + 
Sbjct: 488 NAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQ 547

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PDS   +  L+A A L  +  G+ +H F++ +G  +   +A+SL++MYA CG V  +R++
Sbjct: 548 PDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKM 607

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  + + ++I WT+MI+  GMHG G EA+ LF +M    V P+++TF+A+L AC+H+GL+
Sbjct: 608 FHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLM 667

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG R F  M+  Y L P  EH+ CMVDL  R+  L EAY+FV+  +  KP+  VW A+L
Sbjct: 668 VEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRS-MPIKPSSEVWCALL 726

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GAC +H N +LG   A+ LL  + +N G Y ++SNI+A  GR + VE VR  M   GLKK
Sbjct: 727 GACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKK 786

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE---LMGRCREAGYVPESESAMHELE 501
           + G S +EVD K + F   DKSHP T++IY  L +   L+G  ++ GY+ +++   H + 
Sbjct: 787 NPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLG--KKGGYIAQTKFVFHNVS 844

Query: 502 EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
           EEE+   L  HSE+LAL +GL+ T  G +IRI KNLR+C DCH+  K  S  + R ++VR
Sbjct: 845 EEEKTQMLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVR 904

Query: 562 DRLRFHHFKRGSCSCLDYW 580
           D  RFHHF+RG CSC D+W
Sbjct: 905 DANRFHHFERGLCSCGDFW 923



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 211/428 (49%), Gaps = 23/428 (5%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF--FCIPSPDSFLFNTLIIRNSK 83
           ++H   +  G+G    +   L+++    G +  A+ +F    +   D+  +N++I  +  
Sbjct: 166 EIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVT 225

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
                ++L  +RRM    ++ + YTF A ++     S + LG  +H     S + +D++V
Sbjct: 226 EGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYV 285

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             AL+  YAK   ++ A +VF  M  +  V+WN+++SG  QN   ++A+  F  M++   
Sbjct: 286 ANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQ 345

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            PD  + + ++AA  + G++  G+ VH + +  GLD N+ +  +LI+MYA+C  V     
Sbjct: 346 KPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGY 405

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
            F+ M E ++I+WT +I+GY  +    EA+ LF +++  G+  + +   +VL AC+    
Sbjct: 406 AFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS---- 461

Query: 324 VQEGHRVFASMRQEYGL-----LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
              G +    +R+ +G      L  +     +V+++G  G  + A +  + +  +     
Sbjct: 462 ---GLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVS- 517

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSNIYALA--GRMDRVEVVR 434
            WT+M+  C +H    L VE  E   S++  N  P    ++S + A A    + + + + 
Sbjct: 518 -WTSMITCC-VHNG--LPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIH 573

Query: 435 NIMIQKGL 442
             +I+KG 
Sbjct: 574 GFLIRKGF 581



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 128/264 (48%), Gaps = 7/264 (2%)

Query: 67  PSP-DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           P P  S   NTL       N +  SL       ++  S   +  S ++  C  +  L  G
Sbjct: 8   PLPLKSISVNTL--NKGTLNPAFQSLTLLSTHPLATPSRLEHAHSLLLDLCVAVKALPQG 65

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           + +H  +  S   + L  +  L++ Y K  ++  A KVFD M ++++  WN+M+  +  +
Sbjct: 66  QQLHARLLKSHLSAFLATK--LLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSS 123

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G   EAI L+  MR  GV  D+ T   VL AC  LG+  LG  +H   V  G    V + 
Sbjct: 124 GKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVC 183

Query: 246 TSLINMYARCGNVSKAREIFD--MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
            +LI MY +CG++  AR +FD  MM + + ++W ++IS +   G   EA+ LF RM+  G
Sbjct: 184 NALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVG 243

Query: 304 VRPNNVTFVAVLSACAHAGLVQEG 327
           V  N  TFVA L        V+ G
Sbjct: 244 VASNTYTFVAALQGVEDPSFVKLG 267



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 161/335 (48%), Gaps = 7/335 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           QQ+HA L+ +    S  + TKLL +    G +  A ++F  +     F +N ++     +
Sbjct: 66  QQLHARLLKSHL--SAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSS 123

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +++  Y+ M V  ++    TF +V+K+C  L    LG  +H      G+   + V 
Sbjct: 124 GKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVC 183

Query: 145 AALVNFYAKSNNVDVARKVFD--RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
            AL+  Y K  ++  AR +FD   M  +  V+WNS+IS +   G   EA+ LF  M++ G
Sbjct: 184 NALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVG 243

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           V  ++ T V  L        + LG  +H   +      +V +A +LI MYA+CG +  A 
Sbjct: 244 VASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAE 303

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
            +F  M   + ++W  ++SG   +    +A+  F  M+    +P+ V+ + +++A   +G
Sbjct: 304 RVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSG 363

Query: 323 LVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGR 356
            +  G  V A ++R   GL   ++    ++D++ +
Sbjct: 364 NLLNGKEVHAYAIRN--GLDSNMQIGNTLIDMYAK 396


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/561 (37%), Positives = 326/561 (58%), Gaps = 20/561 (3%)

Query: 33  VAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLL 92
           V    R   + T LL+    +  ++ A+  F  I SPD   +N +     + +   ++L+
Sbjct: 248 VVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALV 307

Query: 93  FYRRMIVSNISPSNYTFSAVIKSCAHL---SILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
            + RM++  + PS  TF   + +CA     +   +G+ +   +  +G + D  V  A +N
Sbjct: 308 LFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLN 367

Query: 150 FYAKSNNVDVARKVFDRMPD--KSVVAWNSMISGYEQNGFAKEAIGLFNLMR-DFGVNPD 206
            YAK  ++  AR VF+R+    +  + WNSM++ Y  +G  KEA  LF  M  +  V P+
Sbjct: 368 MYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPN 427

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T V VL A      I  GR +H  +V  G + + V+  +L+NMYA+CG++  A+ IFD
Sbjct: 428 KVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFD 487

Query: 267 MMS--ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
             S  + +VIAWT++++GY  +G    A++LF  M+  GVRPN++TF++ L+AC H G +
Sbjct: 488 KSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKL 547

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK-----DVIGEKPAPAV 379
           ++G  + + M  ++G++P  +H  C+VDL GR G L+EA K ++     DVI        
Sbjct: 548 EQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVI-------T 600

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W A+L ACK  K  + G   AE ++ ++PE    Y++L+++YA AGR +    +R  M+ 
Sbjct: 601 WMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLD 660

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           KG++   G S VEV+Q+ + FS GDKSHP + EIY  L+ L    + AGYV ++   +H+
Sbjct: 661 KGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHD 720

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           + +E +E  L  HSEKLA+AFGLM T  G  +R++KNLR+C DCH+A K IS  T R+I+
Sbjct: 721 VSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDIL 780

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           +RD  R+HHF  G+CSC DYW
Sbjct: 781 MRDSSRYHHFTSGTCSCGDYW 801



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/409 (29%), Positives = 199/409 (48%), Gaps = 36/409 (8%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP---DSFLFNTLI--- 78
           +++H+ +    +  +  +   L+S+    G +  A++ F  +P     D   +N +I   
Sbjct: 27  RRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAF 86

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSN-YTFSAVIKSCAHLSILNLG--RAVHCHVFVS 135
           +RN  A    ++L  +R M      P N  TF +V+ SC    +L+L   RA+H  +  +
Sbjct: 87  LRNGSAR---EALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGA 143

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVF----DRMPDKSVVAWNSMISGYEQNGFAKEA 191
           G + +  V+ ALV+ Y K  ++D A +VF    D  P  S+V  ++MIS   QNG+ +E+
Sbjct: 144 GIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQES 203

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV-----NVVLAT 246
           + LF  M   G  P   T V VL AC+ L    +G     F++ Q ++V     + VL T
Sbjct: 204 LRLFYAMNLEGTKPSGVTLVSVLNACSML---PVGS-ATAFVLEQAMEVVSATRDNVLGT 259

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           +L+  YAR  ++S+AR  FD +   +V++W AM + Y  H    EA+ LF RM   GVRP
Sbjct: 260 TLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVRP 319

Query: 307 NNVTFVAVLSACA-----HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
           +  TF+  L+ACA      A  +  G R+  S+ +E GL          ++++ + G L 
Sbjct: 320 SVATFITALTACAAYPPQTASAI--GKRI-QSLLEEAGLEGDTAVANATLNMYAKCGSLA 376

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410
           +A    + +   +     W +ML A   H    LG E  E   ++E E 
Sbjct: 377 DARAVFERISPTRRDCITWNSMLAAYGHH---GLGKEAFELFQAMEAEK 422



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 157/302 (51%), Gaps = 18/302 (5%)

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           + P+ +   A++ +C+ L  L  GR +H  +    ++ +  +  AL++ Y+K  ++  A+
Sbjct: 3   VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAK 62

Query: 162 KVFDRMP---DKSVVAWNSMISGYEQNGFAKEAIGLFNLM-RDFGVNPDSTTCVCVLAAC 217
           + FDR+P    + VV WN+MIS + +NG A+EA+ LF  M  D    P+S T V VL +C
Sbjct: 63  QAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSC 122

Query: 218 AQLGDIDLG--RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF----DMMSEL 271
            + G + L   R +H  IVG G++    + T+L++ Y + G++  A E+F    D     
Sbjct: 123 VEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPST 182

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           +++  +AMIS    +G+  E++ LF+ M   G +P+ VT V+VL+AC+   ++  G    
Sbjct: 183 SLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACS---MLPVGSATA 239

Query: 332 ASMRQEYGLLPGVEHHV---CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
             + Q   ++     +V    ++  + R+  L+ A +   D I + P    W AM  A  
Sbjct: 240 FVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRA-RATFDAI-QSPDVVSWNAMAAAYL 297

Query: 389 MH 390
            H
Sbjct: 298 QH 299


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/570 (37%), Positives = 324/570 (56%), Gaps = 10/570 (1%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS-PDSFLFNTLI 78
           R+  ++Q+H   +  G+    S+    ++     G +  A  +F+ +    D   +N++I
Sbjct: 153 RVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMI 212

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
           +   +      +L  Y+ MI        +T ++V+ +   L  L  GR  H  +  +G+ 
Sbjct: 213 VAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFH 272

Query: 139 SDLHVQAALVNFYAKSNNVD---VARKVFDRMPDKSVVAWNSMISGYEQNG-FAKEAIGL 194
            + HV + L++FY+K    D    + KVF  +    +V WN+MISGY  N   ++EA+  
Sbjct: 273 QNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKS 332

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN-VVLATSLINMYA 253
           F  M+  G  PD  + VCV +AC+ L      + +H   +   +  N + +  +LI++Y 
Sbjct: 333 FRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYY 392

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           + GN+  AR +FD M ELN +++  MI GY  HG+GTEA+ L+ RM   G+ PN +TFVA
Sbjct: 393 KSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVA 452

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           VLSACAH G V EG   F +M++ + + P  EH+ CM+DL GRAG L EA +F+ D +  
Sbjct: 453 VLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFI-DAMPY 511

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVV 433
           KP    W A+LGAC+ HKN  L    A  L+ ++P     YVML+N+YA A + + +  V
Sbjct: 512 KPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASV 571

Query: 434 RNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPES 493
           R  M  K ++K  G S +EV +K ++F   D SHP   E+ +YL+E+M + ++ GYV + 
Sbjct: 572 RKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDK 631

Query: 494 ESAMHELEEEEREYS---LRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFI 550
           + AM + +E         L +HSEKLA+AFGLM T  G  + +VKNLR+C DCH+AIKF+
Sbjct: 632 KWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFM 691

Query: 551 SVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S    REIIVRD LRFH FK G CSC DYW
Sbjct: 692 SAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/431 (26%), Positives = 190/431 (44%), Gaps = 54/431 (12%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           I  A+++F  IP PD+  +NTLI   + A  +  +++ ++RM         +T S +I +
Sbjct: 90  IHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAA 149

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-KSVVA 174
           C     ++L + +HC     G+DS   V  A V +Y+K   +  A  VF  M + +  V+
Sbjct: 150 CC--DRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVS 207

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           WNSMI  Y Q+    +A+ L+  M   G   D  T   VL A   L  +  GR  H  ++
Sbjct: 208 WNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLI 267

Query: 235 GQGLDVNVVLATSLINMYARCGNVS---KAREIFDMMSELNVIAWTAMISGYGMH-GYGT 290
             G   N  + + LI+ Y++CG       + ++F  +   +++ W  MISGY M+     
Sbjct: 268 KAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSE 327

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAH------------------------------ 320
           EAV+ F +M+  G RP++ +FV V SAC++                              
Sbjct: 328 EAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNAL 387

Query: 321 ------AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI--G 372
                 +G +Q+   VF  M +    L  V  + CM+  + + G   EA    + ++  G
Sbjct: 388 ISLYYKSGNLQDARWVFDRMPE----LNAVSFN-CMIKGYAQHGHGTEALLLYQRMLDSG 442

Query: 373 EKPAPAVWTAMLGACKMHKNFDLGVE---VAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
             P    + A+L AC      D G E     +    +EPE   HY  + ++   AG+++ 
Sbjct: 443 IAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAE-HYSCMIDLLGRAGKLEE 501

Query: 430 VEVVRNIMIQK 440
            E   + M  K
Sbjct: 502 AERFIDAMPYK 512



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 147/320 (45%), Gaps = 31/320 (9%)

Query: 86  FSTDSL--LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
           F+  SL  L+ + ++ S+   SN+ F  +   C  LS     RA     F S  + ++  
Sbjct: 25  FTGKSLHALYVKSIVASSTYLSNH-FVNLYSKCGRLS---YARAA----FYSTEEPNVFS 76

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
              +V  YAK + + +AR++FD +P    V++N++ISGY        A+ LF  MR  G 
Sbjct: 77  YNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGF 136

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
             D  T   ++AAC     +DL + +H F V  G D    +  + +  Y++ G + +A  
Sbjct: 137 EVDGFTLSGLIAACCD--RVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVS 194

Query: 264 IFDMMSEL-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           +F  M EL + ++W +MI  YG H  G +A+ L+  M   G + +  T  +VL+A     
Sbjct: 195 VFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNA----- 249

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHH------VCMVDLFGRAGLLNEAY---KFVKDVIGE 373
           L    H +    RQ +G L     H        ++D + + G  +  Y   K  ++++  
Sbjct: 250 LTSLDHLIGG--RQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILS- 306

Query: 374 KPAPAVWTAMLGACKMHKNF 393
            P   VW  M+    M++  
Sbjct: 307 -PDLVVWNTMISGYSMNEEL 325



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 53/210 (25%)

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK--------------------- 260
           D+  G+ +H   V   +  +  L+   +N+Y++CG +S                      
Sbjct: 23  DLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVK 82

Query: 261 ----------AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
                     AR++FD + + + +++  +ISGY        A+ LF RMR  G   +  T
Sbjct: 83  AYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFT 142

Query: 311 FVAVLSACA---------HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
              +++AC          H   V  G   ++S+   +            V  + + GLL 
Sbjct: 143 LSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAF------------VTYYSKGGLLR 190

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHK 391
           EA       + E      W +M+ A   HK
Sbjct: 191 EAVSVFYG-MDELRDEVSWNSMIVAYGQHK 219


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/610 (35%), Positives = 352/610 (57%), Gaps = 36/610 (5%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+S     ++ A  +L+ L+   +V+A +  +G   +  M++ L+ +      I  A+R+
Sbjct: 234 PNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRL 293

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F    + +  L N +     +   + ++L  +  M+ S + P   +  + I SC+ L  +
Sbjct: 294 FDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNI 353

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G++ H +V  +G++S  ++  AL++ Y K +  D A ++FDRM +K+VV WNS+++GY
Sbjct: 354 LWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGY 413

Query: 183 EQNG-------------------------------FAKEAIGLF-NLMRDFGVNPDSTTC 210
            +NG                                 +EAI +F ++    GVN D  T 
Sbjct: 414 VENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTM 473

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           + + +AC  LG +DL +W++ +I   G+ ++V L T+L++M++RCG+   A  IF+ ++ 
Sbjct: 474 MSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTN 533

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            +V AWTA I    M G    A+ELF  M   G++P+ V FV  L+AC+H GLVQ+G  +
Sbjct: 534 RDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEI 593

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           F SM + +G+ P   H+ CMVDL GRAGLL EA + ++D+  E P   +W ++L AC++ 
Sbjct: 594 FYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPME-PNDVIWNSLLAACRVQ 652

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
            N ++    AE +  + PE  G YV+LSN+YA AGR + +  VR  M +KGL+K  G S+
Sbjct: 653 GNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSS 712

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLR 510
           +++  K + F+ GD+SHP    I   LDE+  R    G+VP+  + + +++E+E+ + L 
Sbjct: 713 IQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLS 772

Query: 511 YHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
            HSEKLA+A+GL+ ++ G TIRIVKNLR+C DCHS  KF S   NREII+RD  RFH+ +
Sbjct: 773 RHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIR 832

Query: 571 RGSCSCLDYW 580
           +G CSC D+W
Sbjct: 833 QGKCSCGDFW 842



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 185/323 (57%), Gaps = 5/323 (1%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF---ITYA 59
           N+   + A  + LK    +  L+  H  L   G     S +TKL++  C+ G    +++A
Sbjct: 27  NQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFA 86

Query: 60  QRIFFCIPSPDS-FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           + +F    S  + F++N+LI   + +    +++L + RM+ S ISP  YTF   + +CA 
Sbjct: 87  KEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAK 146

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
                 G  +H  +   GY  DL VQ +LV+FYA+   +D ARKVFD M +++VV+W SM
Sbjct: 147 SRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSM 206

Query: 179 ISGYEQNGFAKEAIGL-FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           I GY +  FAK+A+ L F ++RD  V P+S T VCV++ACA+L D++ G  V+ FI   G
Sbjct: 207 ICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSG 266

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           ++VN ++ ++L++MY +C  +  A+ +FD     N+    AM S Y   G   EA+ +F+
Sbjct: 267 IEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFN 326

Query: 298 RMRAHGVRPNNVTFVAVLSACAH 320
            M   GVRP+ ++ ++ +S+C+ 
Sbjct: 327 LMMDSGVRPDRISMLSAISSCSQ 349



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 201/412 (48%), Gaps = 36/412 (8%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           Q+H  ++  GY +   +   L+    + G +  A+++F  +   +   + ++I   ++ +
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214

Query: 86  FSTDSL-LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           F+ D++ LF+R +    ++P++ T   VI +CA L  L  G  V+  +  SG + +  + 
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV 274

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           +ALV+ Y K N +DVA+++FD     ++   N+M S Y + G  +EA+G+FNLM D GV 
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC--------- 255
           PD  + +  +++C+QL +I  G+  H +++  G +    +  +LI+MY +C         
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394

Query: 256 ----------------------GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
                                 G V  A E F+ M E N+++W  +ISG        EA+
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAI 454

Query: 294 ELFHRMRAH-GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           E+F  M++  GV  + VT +++ SAC H G +     ++  + +  G+   V     +VD
Sbjct: 455 EVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKN-GIQLDVRLGTTLVD 513

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           +F R G    A      +       + WTA +GA  M  N +  +E+ + ++
Sbjct: 514 MFSRCGDPESAMSIFNSLTNRD--VSAWTAAIGAMAMAGNAERAIELFDDMI 563


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/560 (39%), Positives = 331/560 (59%), Gaps = 6/560 (1%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            +Q+H      G     S+   LL+L  +   I   Q++FF +P  D   +N+ I   +K 
Sbjct: 577  RQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKY 636

Query: 85   NFST-DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
              S   +L ++  M+ +   P+  TF  ++ + +  S+L LG  +H  +       D  +
Sbjct: 637  EASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAI 696

Query: 144  QAALVNFYAKSNNVDVARKVFDRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
            + AL+ FY K   ++    +F RM ++   V+WNSMISGY  +G   +A+ L   M   G
Sbjct: 697  ENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRG 756

Query: 203  VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
               D  T   VL+ACA +  ++ G  VH   V   L+ +VV+ ++L++MYA+CG +  A 
Sbjct: 757  QKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYAS 816

Query: 263  EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
              F++M   N+ +W +MISGY  HG+G +A+++F RM+ HG  P++VTFV VLSAC+H G
Sbjct: 817  RFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVG 876

Query: 323  LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
            LV EG++ F SM + YGL P +EH  CMVDL GRAG + +   F+K  +   P   +W  
Sbjct: 877  LVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIK-TMPMDPNILIWRT 935

Query: 383  MLGAC--KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
            +LGAC     +N +LG   A+ L+ +EP+N  +YV+LSN++A  G  + V   R  M + 
Sbjct: 936  VLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKA 995

Query: 441  GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
             +KK  G S V +    +LF  GD++HP   +IY+ L ELM + R+AGYVPE++ A+++L
Sbjct: 996  AVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYDL 1055

Query: 501  EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
            E E +E  L YHSEKLA+AF L R S  + IRI+KNLR+C DCH+A K+IS    R+II+
Sbjct: 1056 ELENKEELLSYHSEKLAIAFVLTRKSE-LPIRIMKNLRVCGDCHTAFKYISKIVGRQIIL 1114

Query: 561  RDRLRFHHFKRGSCSCLDYW 580
            RD  RFHHF  G CSC DYW
Sbjct: 1115 RDSNRFHHFGGGMCSCGDYW 1134



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 192/382 (50%), Gaps = 13/382 (3%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           L+Q+   +  +G+ R   + + L++     G +  A+ IF  +   ++   N L++  ++
Sbjct: 370 LEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLAR 429

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR----AVHCHVFVSGY-D 138
            +   ++   ++ M    +  ++ +   ++ +    S L  G+     VH ++F SG  D
Sbjct: 430 QHQGEEAAKVFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVD 488

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
           + + +  ALVN Y K   +D A  VF  MP K  V+WNSMISG + N   +EA+  F+ M
Sbjct: 489 ARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTM 548

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
           +  G+ P + + +  L++C+ LG + LGR +H      GLD++V ++ +L+ +YA   ++
Sbjct: 549 KRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSI 608

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGT-EAVELFHRMRAHGVRPNNVTFVAVLSA 317
           ++ +++F  M E + ++W + I     +     +A++ F  M   G RPN VTF+ +L+A
Sbjct: 609 NECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAA 668

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
            +   ++  GH++ A + + Y +         ++  +G+   + +  + +   + E+   
Sbjct: 669 VSSFSVLGLGHQIHALILK-YSVADDNAIENALLAFYGKCEQMEDC-EIIFSRMSERRDE 726

Query: 378 AVWTAM----LGACKMHKNFDL 395
             W +M    L +  +HK  DL
Sbjct: 727 VSWNSMISGYLHSGILHKAMDL 748



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 148/305 (48%), Gaps = 19/305 (6%)

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H  ++ +G+  D+     L+N Y +  N+  ARK+FD MP K++V+W+ +ISGY QN  
Sbjct: 162 LHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRM 221

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD--IDLGRWVHEFIVGQGLDVNVVLA 245
             EA  LF  +   G+ P+       L AC Q G   I LG  +H FI       +++L+
Sbjct: 222 PDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILS 281

Query: 246 TSLINMYARC-GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             L++MY+ C G++  A  +FD +   N + W ++IS Y   G    A +LF  M+  GV
Sbjct: 282 NVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGV 341

Query: 305 ----RPNNVTFVAVLSAC---AHAGLV---QEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
               RPN  T  ++++A    A  GLV   Q   R+     ++ G L  +     +V+ F
Sbjct: 342 ELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRI-----EKSGFLRDLYVGSALVNGF 396

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            R GL++ A    K +  ++ A  +   M+G  + H+  +      E    VE  +    
Sbjct: 397 ARYGLMDCAKMIFKQMY-DRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLV 455

Query: 415 VMLSN 419
           V+LS 
Sbjct: 456 VLLST 460



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 151/324 (46%), Gaps = 12/324 (3%)

Query: 16  KAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFN 75
           K    L     +H  L   G+         L+++    G +  A+++F  +P  +   ++
Sbjct: 151 KTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWS 210

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
            LI   ++     ++   ++ +I S + P+++   + +++C       +   +  H F+ 
Sbjct: 211 CLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFIC 270

Query: 136 GYD--SDLHVQAALVNFYAK-SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI 192
                SD+ +   L++ Y+  S ++D A +VFD +  ++ V WNS+IS Y + G A  A 
Sbjct: 271 KLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAF 330

Query: 193 GLFNLMRDFGVN----PDS-TTCVCVLAAC--AQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
            LF++M+  GV     P+  T C  V AAC  A  G + L + +   I   G   ++ + 
Sbjct: 331 KLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTR-IEKSGFLRDLYVG 389

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           ++L+N +AR G +  A+ IF  M + N +    ++ G      G EA ++F  M+   V 
Sbjct: 390 SALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL-VE 448

Query: 306 PNNVTFVAVLSACAHAGLVQEGHR 329
            N+ + V +LS       ++EG R
Sbjct: 449 INSESLVVLLSTFTEFSNLKEGKR 472


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/590 (36%), Positives = 352/590 (59%), Gaps = 14/590 (2%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQQVHAHLI--VAGYGRSRSMLTKLLSLVCDAGFITYA 59
           +N + H   +  +L     L  L+Q+HA  I   + +  S  + +++L +     F  YA
Sbjct: 19  ENSKTHQSRFLHLLTDCTDLSKLKQIHAQAIRNFSTHNSSLFLYSRILHVSSLIDF-DYA 77

Query: 60  QRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLL--FYRRMIVSNISPSNYTFSAVIKSCA 117
            R+F  I +P+SF++NTLI   +++    +  +  FYR +   ++ P  +TF  ++K+CA
Sbjct: 78  CRVFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACA 137

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
           ++  L+ GR  H  +F  G D D++V  +L++ YA    + +A KVF++MP +S+V+WN 
Sbjct: 138 YVFALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNV 197

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           MI  Y Q+G  + A+ LF  M++    PD  T   +++ACA +G + LG W H +++ + 
Sbjct: 198 MIDAYVQSGLFENALKLFVEMQN-SFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKA 256

Query: 238 ---LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
              +  +V++ +SL++MY++CG++  A+++F+ M + ++ +W +MI    MHG G  A++
Sbjct: 257 SGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQ 316

Query: 295 LFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
            F R+       PN+VTFV VLSAC H G+V +G + F  M  +Y + P +EH+ C+VDL
Sbjct: 317 CFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDL 376

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC-KMHKNFDLGVEVAEHLLSVEPE-NP 411
             R+G ++EA + V + +  KP   +W ++L AC K +   +L  EVA  +L  E   + 
Sbjct: 377 LSRSGFIDEALELVAN-MHIKPDAVIWRSLLDACYKQNAGVELSEEVAFKILQSEKTISS 435

Query: 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTN 471
           G YVMLS +YA A + + V ++R +M   G+ K  G S++E+D  ++ F  GD SHP   
Sbjct: 436 GVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGDTSHPRIK 495

Query: 472 EIYQYLDELMGRCREAGYVPE-SESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT 530
           EIY  +D +  +    GY P+ S++ M +  +  ++ SL+ HSE+LA+AFGL+   PG  
Sbjct: 496 EIYGVIDLIEEKLERRGYSPDCSQATMVDEPDNIKQQSLKLHSERLAIAFGLLNLKPGTP 555

Query: 531 IRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +RI KNLR+C DCH   K IS   N EII+RDR RFHHFK G CSC+D+W
Sbjct: 556 VRIFKNLRVCNDCHQVTKLISEIFNVEIIMRDRNRFHHFKHGMCSCMDFW 605


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/519 (41%), Positives = 320/519 (61%), Gaps = 13/519 (2%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV- 132
           ++ +I   ++     ++L  +R+M +    P+  T  +++  CA    L  G+  HCH  
Sbjct: 335 WSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAI 394

Query: 133 -FVSGYD-----SDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNSMISGYEQ 184
            ++   D      DL V  AL++ Y+K  +   AR +FD +P  D+SVV W  +I G  Q
Sbjct: 395 KWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQ 454

Query: 185 NGFAKEAIGLFN--LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
           +G A EA+ LF+  L  D  V P++ T  C L ACA+LG +  GR +H +++    +  +
Sbjct: 455 HGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAM 514

Query: 243 V-LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +A  LI+MY++ G+V  AR +FD M + N ++WT++++GYGMHG G EA+++F+ M+ 
Sbjct: 515 LFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQK 574

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ P+ VTFV VL AC+H+G+V +G   F  M +++G++PG EH+ CMVDL  RAG L+
Sbjct: 575 VGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLD 634

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA + ++  +  KP PAVW A+L AC+++ N +LG   A  LL +E  N G Y +LSNIY
Sbjct: 635 EAMELIRG-MPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIY 693

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A A     V  +R +M   G+KK  G S V+  +    F  GD SHP + +IY  L +LM
Sbjct: 694 ANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLM 753

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            R +  GYVP++  A+H++++EE+   L  HSEKLALA+G++ T+PG  IRI KNLR C 
Sbjct: 754 QRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACG 813

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSA  +IS+    EIIVRD  RFHHFK GSCSC  YW
Sbjct: 814 DCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/473 (28%), Positives = 225/473 (47%), Gaps = 64/473 (13%)

Query: 21  LKPLQQVHAHLIVAGYGRSRS-MLTKLLSLVCDAGFITYAQRIFFCIPSPDS-FLFNTLI 78
           L   + +H  L+V G     + +++  L+    A  ++  +R+    PS  + F +N LI
Sbjct: 42  LASAELIHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLH---PSSHTVFWWNQLI 98

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
            R+    F  D L  YRRM      P +YTF  V+K+C  +     G +VH  VF SG++
Sbjct: 99  RRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFE 158

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV---VAWNSMISGYEQNGFAKEAIGLF 195
            ++ V   LV+ Y +    + AR+VFD M ++ V   V+WNS+++ Y Q G +  A+ +F
Sbjct: 159 WNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMF 218

Query: 196 NLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
             M  D G+ PD+ + V VL ACA +G    G+ VH + +  GL  +V +  ++++MYA+
Sbjct: 219 ERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAK 278

Query: 255 CGNVSKAREIFDMMSELNVIAWTAM----------------------------------- 279
           CG + +A ++F+ M   +V++W AM                                   
Sbjct: 279 CGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAV 338

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           I+GY   G G EA+++F +MR  G  PN VT V++LS CA AG +  G        +   
Sbjct: 339 IAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWIL 398

Query: 340 LL----PGVEHHV--CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV-WTAMLGACKMHKN 392
            L    PG +  V   ++D++ +     +A + + D+I  K    V WT ++G    H  
Sbjct: 399 NLDENDPGDDLMVINALIDMYSKCK-SPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGE 457

Query: 393 FDLGVEVAEHLLSVEPEN---PGHYVMLSNIYALA-------GRMDRVEVVRN 435
            +  +E+   +L  +P+N   P  + +   + A A       GR     V+RN
Sbjct: 458 ANEALELFSQML--QPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN 508



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 209/451 (46%), Gaps = 61/451 (13%)

Query: 5   QPHSPAYEAILKAG---PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    +  +LKA    P  +    VHA +  +G+  +  +   L+S+    G    A++
Sbjct: 123 RPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQ 182

Query: 62  IFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCA 117
           +F  +      D   +N+++    +   S  ++  + RM     I P   +   V+ +CA
Sbjct: 183 VFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACA 242

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            +   + G+ VH +   SG   D+ V  A+V+ YAK   ++ A KVF+RM  K VV+WN+
Sbjct: 243 SVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNA 302

Query: 178 -----------------------------------MISGYEQNGFAKEAIGLFNLMRDFG 202
                                              +I+GY Q G   EA+ +F  MR  G
Sbjct: 303 MVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCG 362

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV-------NVVLATSLINMYARC 255
             P+  T V +L+ CA  G +  G+  H   +   L++       ++++  +LI+MY++C
Sbjct: 363 SEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKC 422

Query: 256 GNVSKAREIFDMM--SELNVIAWTAMISGYGMHGYGTEAVELFHRMRA--HGVRPNNVTF 311
            +   AR +FD++   + +V+ WT +I G   HG   EA+ELF +M    + V PN  T 
Sbjct: 423 KSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTI 482

Query: 312 VAVLSACAHAGLVQEGHRVFASM---RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
              L ACA  G ++ G ++ A +   R E  +L       C++D++ ++G ++ A + V 
Sbjct: 483 SCALMACARLGALRFGRQIHAYVLRNRFESAMLFVAN---CLIDMYSKSGDVDAA-RVVF 538

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           D + ++   + WT+++    MH   +  +++
Sbjct: 539 DNMHQRNGVS-WTSLMTGYGMHGRGEEALQI 568


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/519 (41%), Positives = 320/519 (61%), Gaps = 13/519 (2%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV- 132
           ++ +I   ++     ++L  +R+M++    P+  T  +++  CA    L  G+  HCH  
Sbjct: 354 WSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAI 413

Query: 133 -FVSGYD-----SDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNSMISGYEQ 184
            ++   D      DL V  AL++ Y+K  +   AR +FD +P  D+SVV W  +I G  Q
Sbjct: 414 KWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQ 473

Query: 185 NGFAKEAIGLFN--LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
           +G A EA+ LF+  L  D  V P++ T  C L ACA+LG +  GR +H +++    +  +
Sbjct: 474 HGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAM 533

Query: 243 V-LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +A  LI+MY++ G+V  AR +FD M + N ++WT++++GYGMHG G EA+++F+ M+ 
Sbjct: 534 LFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQK 593

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             + P+ VTFV VL AC+H+G+V +G   F  M +++G++PG EH+ CMVDL  RAG L+
Sbjct: 594 VXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLD 653

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA + ++  +  KP PAVW A+L AC+++ N +LG   A  LL +E  N G Y +LSNIY
Sbjct: 654 EAMELIRG-MPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIY 712

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A A     V  +R +M   G+KK  G S V+  +    F  GD SHP + +IY  L +LM
Sbjct: 713 ANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLM 772

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            R +  GYVP++  A+H++++EE+   L  HSEKLALA+G++ T+PG  IRI KNLR C 
Sbjct: 773 QRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACG 832

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSA  +IS+    EIIVRD  RFHHFK GSCSC  YW
Sbjct: 833 DCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 136/473 (28%), Positives = 225/473 (47%), Gaps = 64/473 (13%)

Query: 21  LKPLQQVHAHLIVAGYGRSRS-MLTKLLSLVCDAGFITYAQRIFFCIPSPDS-FLFNTLI 78
           L   +  H  L+V G     + +++  L+    A  ++  +R+    PS  + F +N LI
Sbjct: 61  LASAELTHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLH---PSSHTVFWWNQLI 117

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
            R+    F  D L  YRRM      P +YTF  V+K+C  +     G +VH  VF SG++
Sbjct: 118 RRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFE 177

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV---VAWNSMISGYEQNGFAKEAIGLF 195
            ++ V   LV+ Y +    + AR+VFD M ++ V   V+WNS+++ Y Q G +  A+ +F
Sbjct: 178 WNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMF 237

Query: 196 NLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
             M  D G+ PD+ + V VL ACA +G    G+ VH + +  GL  +V +  ++++MYA+
Sbjct: 238 ERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAK 297

Query: 255 CGNVSKAREIFDMMS-----------------------------------ELNVIAWTAM 279
           CG + +A ++F+ M                                    ELNV+ W+A+
Sbjct: 298 CGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAV 357

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           I+GY   G G EA+++F +M   G  PN VT V++LS CA AG +  G        +   
Sbjct: 358 IAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWIL 417

Query: 340 LL----PGVEHHV--CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV-WTAMLGACKMHKN 392
            L    PG +  V   ++D++ +     +A + + D+I  K    V WT ++G    H  
Sbjct: 418 NLDENDPGDDLMVINALIDMYSKCK-SPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGE 476

Query: 393 FDLGVEVAEHLLSVEPEN---PGHYVMLSNIYALA-------GRMDRVEVVRN 435
            +  +E+   +L  +P+N   P  + +   + A A       GR     V+RN
Sbjct: 477 ANEALELFSQML--QPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN 527



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 208/451 (46%), Gaps = 61/451 (13%)

Query: 5   QPHSPAYEAILKAG---PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    +  +LKA    P  +    VHA +  +G+  +  +   L+S+    G    A++
Sbjct: 142 RPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQ 201

Query: 62  IFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCA 117
           +F  +      D   +N+++    +   S  ++  + RM     I P   +   V+ +CA
Sbjct: 202 VFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACA 261

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            +   + G+ VH +   SG   D+ V  A+V+ YAK   ++ A KVF+RM  K VV+WN+
Sbjct: 262 SVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNA 321

Query: 178 -----------------------------------MISGYEQNGFAKEAIGLFNLMRDFG 202
                                              +I+GY Q G   EA+ +F  M   G
Sbjct: 322 MVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCG 381

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV-------NVVLATSLINMYARC 255
             P+  T V +L+ CA  G +  G+  H   +   L++       ++++  +LI+MY++C
Sbjct: 382 SEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKC 441

Query: 256 GNVSKAREIFDMM--SELNVIAWTAMISGYGMHGYGTEAVELFHRMRA--HGVRPNNVTF 311
            +   AR +FD++   + +V+ WT +I G   HG   EA+ELF +M    + V PN  T 
Sbjct: 442 KSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTI 501

Query: 312 VAVLSACAHAGLVQEGHRVFASM---RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
              L ACA  G ++ G ++ A +   R E  +L       C++D++ ++G ++ A + V 
Sbjct: 502 SCALMACARLGALRFGRQIHAYVLRNRFESAMLFVAN---CLIDMYSKSGDVDAA-RVVF 557

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           D + ++   + WT+++    MH   +  +++
Sbjct: 558 DNMHQRNGVS-WTSLMTGYGMHGRGEEALQI 587


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/592 (35%), Positives = 340/592 (57%), Gaps = 34/592 (5%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           + L++ HA LI  G  +       L+S    +  +   + +F   P  D  L+++L+   
Sbjct: 20  RSLRRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAV 79

Query: 82  SKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
           S +      L   RRM+ ++ + P ++  +++  + A L  L LG+ +H H   S Y SD
Sbjct: 80  SHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSD 139

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDR-------------------------------MPD 169
             V+++L++ Y K    D ARKVFD                                MP 
Sbjct: 140 DVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPG 199

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVC-VLAACAQLGDIDLGRW 228
           +++ AW ++ISG+ ++G +  A+ LF  MR  GV+ D    +   +   A L    LGR 
Sbjct: 200 RTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQ 259

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H   +  G   ++++  ++++MY++C ++  ARE+F+ ++  ++I+WT M+ G   HG 
Sbjct: 260 LHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGR 319

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             EA  L+ RM   GV+PN VTFV ++ AC+HAGLVQ+G ++F SM+ EYG+ P ++H+ 
Sbjct: 320 AEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYT 379

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408
           C +DL  R+G L EA + +   +   P  A W ++L ACK + N ++ + VA++LL + P
Sbjct: 380 CYLDLLSRSGHLAEAEELIT-TMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRP 438

Query: 409 ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHP 468
           + P  YV+LSN+YA+ G+ D V+ VR +M    ++K  GYS +EV ++  LF  G+    
Sbjct: 439 KYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPID 498

Query: 469 NTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPG 528
              EI  +L+EL+   R+ GYVP++ S MH+LEE E+E+ L  HSE+LA+AFG++R+  G
Sbjct: 499 LREEILGFLEELVSEMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSPLG 558

Query: 529 MTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             IR+VKNLR+C DCH+ +KFIS    R+IIVRD  RFHHF+ G CSC ++W
Sbjct: 559 SVIRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/539 (35%), Positives = 329/539 (61%), Gaps = 1/539 (0%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN 101
           M   L++ +     I  A+ +F  +   DS  + T++   ++     ++L  +RRM    
Sbjct: 214 MYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEG 273

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           +    YTF +++ +C  L+    G+ +H ++  + Y+ ++ V +ALV+ Y+K  ++ +A 
Sbjct: 274 VGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAE 333

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
            VF RM  +++++W +MI GY QN  ++EA+  F+ M+  G+ PD  T   V+++CA L 
Sbjct: 334 AVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLA 393

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            ++ G   H   +  GL   + ++ +L+ +Y +CG++  A  +FD MS  + ++WTA+++
Sbjct: 394 SLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVT 453

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           GY   G   E ++LF +M  +G++P+ VTF+ VLSAC+ AGLV++G   F SM++++ ++
Sbjct: 454 GYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIV 513

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P  +H+ CM+DL+ R+G   EA +F+K  +   P    W  +L +C++  N ++G   AE
Sbjct: 514 PIDDHYTCMIDLYSRSGRFKEAEEFIKQ-MPHSPDAFGWATLLSSCRLRGNMEIGKWAAE 572

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
           +LL  +P+NP  YV+L +++A  G+   V  +R  M  + +KK  G S ++   K ++FS
Sbjct: 573 NLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFS 632

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
             D+SHP ++ IY+ L+ L  +  E GY P+  S +H++ + ++ + + +HSEKLA+AFG
Sbjct: 633 ADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFG 692

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           L+     M IRIVKNLR+CVDCH+A KFIS  T R+I+VRD +RFH F  G+CSC D+W
Sbjct: 693 LIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 203/453 (44%), Gaps = 68/453 (15%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISP 104
           LLS +  +  +   +R+F  +P  D+  +N LI   S       S+  YR ++   ++ P
Sbjct: 85  LLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRP 144

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           +  T SA+I   + LS   LG +VHC V   G+ +   V + LV+ YAK   +  AR+VF
Sbjct: 145 TRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVF 204

Query: 165 DRMPDKSVV-------------------------------AWNSMISGYEQNGFAKEAIG 193
             M  K+VV                                W +M++G  QNG   EA+ 
Sbjct: 205 QEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALD 264

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           +F  MR  GV  D  T   +L AC  L   + G+ +H +I     + NV + ++L++MY+
Sbjct: 265 VFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYS 324

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +C ++  A  +F  M+  N+I+WTAMI GYG +    EAV  F  M+  G++P++ T  +
Sbjct: 325 KCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGS 384

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD---- 369
           V+S+CA+   ++EG + F  +    GL+  +     +V L+G+ G + +A++   +    
Sbjct: 385 VISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH 443

Query: 370 -----------------------------VIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
                                        V G KP    +  +L AC      + G +  
Sbjct: 444 DQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYF 503

Query: 401 EHLLSVEPENP--GHYVMLSNIYALAGRMDRVE 431
           + +       P   HY  + ++Y+ +GR    E
Sbjct: 504 DSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAE 536



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 131/268 (48%), Gaps = 8/268 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+HA++    Y  +  + + L+ +      I  A+ +F  +   +   +  +I+   + 
Sbjct: 298 KQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQN 357

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             S +++  +  M +  I P ++T  +VI SCA+L+ L  G   HC   VSG    + V 
Sbjct: 358 ACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS 417

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            ALV  Y K  +++ A ++FD M     V+W ++++GY Q G AKE I LF  M   G+ 
Sbjct: 418 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLK 477

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA----TSLINMYARCGNVSK 260
           PD  T + VL+AC++ G ++ G    ++      D ++V      T +I++Y+R G   +
Sbjct: 478 PDGVTFIGVLSACSRAGLVEKG---CDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKE 534

Query: 261 AREIFDMMS-ELNVIAWTAMISGYGMHG 287
           A E    M    +   W  ++S   + G
Sbjct: 535 AEEFIKQMPHSPDAFGWATLLSSCRLRG 562



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 32/239 (13%)

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           VF    D +L  + AL++  A S  V    ++F  MP++  V++N++I+G+   G    +
Sbjct: 70  VFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARS 129

Query: 192 IGLFN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           + L+  L+R+  V P   T   ++   + L D  LG  VH  ++  G      + + L++
Sbjct: 130 VQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVD 189

Query: 251 MYA-------------------------------RCGNVSKAREIFDMMSELNVIAWTAM 279
           MYA                               RC  +  A+ +F +M + + I WT M
Sbjct: 190 MYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTM 249

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           ++G   +G   EA+++F RMRA GV  +  TF ++L+AC      +EG ++ A + + +
Sbjct: 250 VTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTW 308


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/541 (38%), Positives = 332/541 (61%), Gaps = 16/541 (2%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVS 100
           T ++   C  G +  A+ +F  +P  +   + T+I   ++N + + +       R++   
Sbjct: 257 TNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIA-------RKLFEV 309

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
               +  +++A++K   +   L+        +F +     +    A++  + ++  V  A
Sbjct: 310 MPEKNEVSWTAMLKGYTNCGRLDEA----SELFNAMPIKSVVACNAMILCFGQNGEVPKA 365

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
           R+VFD+M +K    W++MI  YE+ G   +A+ LF +M+  G+ P+  + + VL+ CA L
Sbjct: 366 RQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGL 425

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
            ++D GR +H  +V    D++V +A+ L++MY +CGN++KA+++FD  +  +V+ W ++I
Sbjct: 426 ANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSII 485

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GY  HG G EA+ +FH M   G+ P++VTFV VLSAC++ G V++G  +F SM  +Y +
Sbjct: 486 TGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQV 545

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
              +EH+ CMVDL GRAG LNEA   ++ +  E  A  +W A+LGAC+ H   DL    A
Sbjct: 546 EQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADA-IIWGALLGACRTHMKLDLAEVAA 604

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           + LL +EP+N G +++LSNIYA  GR D V  +R  M  + + K+ G S + V++K + F
Sbjct: 605 KKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKF 664

Query: 461 SMGDKS-HPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALA 519
           + GD S HP  +EI + L+ L G  REAGY P+    +H+++EEE+  SL YHSEKLA+A
Sbjct: 665 TGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVA 724

Query: 520 FGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           +GL++   GM IR++KNLR+C DCH+AIK I+  T REII+RD  RFHHFK GSCSC DY
Sbjct: 725 YGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDY 784

Query: 580 W 580
           W
Sbjct: 785 W 785



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 177/421 (42%), Gaps = 58/421 (13%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           L+S   + G I  A+ +F  +P  +   +  ++    K    +++   + +M   N+   
Sbjct: 166 LVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSW 225

Query: 106 NYTFSAVIKSCAHLSILNLGRAVH-CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
                 +++          GR    C +F    + D+  +  ++  Y +   +  AR +F
Sbjct: 226 TVMLGGLLQE---------GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLF 276

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           D MP ++VV+W +MI+GY QN     A  LF +M +     +  +   +L      G +D
Sbjct: 277 DEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPE----KNEVSWTAMLKGYTNCGRLD 332

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
                 E      +  +VV   ++I  + + G V KAR++FD M E +   W+AMI  Y 
Sbjct: 333 EA---SELFNAMPIK-SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYE 388

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPG 343
             G   +A+ELF  M+  G+RPN  + ++VLS CA    +  G  + A + R ++ L   
Sbjct: 389 RKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDL--D 446

Query: 344 VEHHVCMVDLFGRAGLLNEAYKF-----VKDVI--------------------------- 371
           V     ++ ++ + G L +A +      VKDV+                           
Sbjct: 447 VYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHF 506

Query: 372 -GEKPAPAVWTAMLGACKMHKNFDLGVEV---AEHLLSVEPENPGHYVMLSNIYALAGRM 427
            G  P    +  +L AC    N   G+E+    E    VE +   HY  + ++   AG++
Sbjct: 507 SGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVE-QKIEHYACMVDLLGRAGKL 565

Query: 428 D 428
           +
Sbjct: 566 N 566



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 59/295 (20%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           +L+  Y++   ++ AR VFD M DK++++WNS+++GY QN   +EA  +F+ M       
Sbjct: 103 SLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS------ 156

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
                                            + N +    L++ Y   G +++ARE+F
Sbjct: 157 ---------------------------------ERNTISWNGLVSGYINNGMINEAREVF 183

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D M E NV++WTAM+ GY   G  +EA  LF +M    V    V++  +L      G + 
Sbjct: 184 DRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV----VSWTVMLGGLLQEGRID 239

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAM 383
           E  R+F  M ++      V     M+  + + G L EA    + +  E P   V  WT M
Sbjct: 240 EACRLFDMMPEK-----DVVTRTNMIGGYCQVGRLVEA----RMLFDEMPRRNVVSWTTM 290

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIM 437
           +     ++  D    +A  L  V PE N   +  +   Y   GR+D    + N M
Sbjct: 291 ITGYVQNQQVD----IARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM 341



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 165/375 (44%), Gaps = 53/375 (14%)

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFS--AVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
           S+  +S  S L + R++++    SN+  S  ++I   + L  +   R V    F    D 
Sbjct: 72  SQPGYSMFSGLMFFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVV----FDEMRDK 127

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           ++    ++V  Y ++     A+ +FD+M +++ ++WN ++SGY  NG   EA  +F+ M 
Sbjct: 128 NIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMP 187

Query: 200 DFGV---------------------------NPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           +  V                             +  +   +L    Q G ID    + + 
Sbjct: 188 ERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDM 247

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           +     + +VV  T++I  Y + G + +AR +FD M   NV++WT MI+GY  +     A
Sbjct: 248 MP----EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIA 303

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
            +LF  M       N V++ A+L    + G + E   +F +M      +  V     M+ 
Sbjct: 304 RKLFEVM----PEKNEVSWTAMLKGYTNCGRLDEASELFNAMP-----IKSVVACNAMIL 354

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE--HLLSVEPEN 410
            FG+ G + +A + V D + EK     W+AM+   K+++   L ++  E   ++  E   
Sbjct: 355 CFGQNGEVPKARQ-VFDQMREKD-EGTWSAMI---KVYERKGLELDALELFRMMQREGIR 409

Query: 411 PGHYVMLSNIYALAG 425
           P    ++S +   AG
Sbjct: 410 PNFPSLISVLSVCAG 424



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/181 (18%), Positives = 87/181 (48%), Gaps = 7/181 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+ P+  ++L     L  L   +++HA L+ + +     + + LLS+    G +  A++
Sbjct: 409 RPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQ 468

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F      D  ++N++I   ++     ++L  +  M  S I P + TF  V+ +C++   
Sbjct: 469 VFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGN 528

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQ--AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSM 178
           +  G  +  +   + Y  +  ++  A +V+   ++  ++ A  + ++MP +   + W ++
Sbjct: 529 VKKGLEIF-NSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGAL 587

Query: 179 I 179
           +
Sbjct: 588 L 588


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/556 (35%), Positives = 333/556 (59%), Gaps = 5/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           ++V   ++V       +M+T LL        +  A+ +F  +   DS  + T++   ++ 
Sbjct: 204 KRVFDEMVVKNVVMYNTMITGLLR----CKMVEEARGVFEAMVDRDSITWTTMVTGLTQN 259

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
              +++L  +RRM    +    YTF +++ +C  L+    G+ +H +   + YD ++ V 
Sbjct: 260 GLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVG 319

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           +ALV+ Y+K  ++ +A  VF RM  K++++W +MI GY QNG  +EA+ +F+ M+  G+ 
Sbjct: 320 SALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIK 379

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T   V+++CA L  ++ G   H   +  GL   + ++++L+ +Y +CG++  A  +
Sbjct: 380 PNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRL 439

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD M   + +++TA++SGY   G   E ++LF +M   GV+PN VTF+ VLSAC+ +GLV
Sbjct: 440 FDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLV 499

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           ++G   F SM+Q++G++   +H+ CM+DL+ R+G L EA +F++  +   P    W  +L
Sbjct: 500 EKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQ-MPRCPDAIGWATLL 558

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            AC++  + ++G   AE+LL  +P+NP  YV+L +++A  G    V ++R  M  + +KK
Sbjct: 559 SACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKK 618

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S ++   + ++FS  D+SHP +  IY+ L  L  +  E GY P+  S +H++ + E
Sbjct: 619 EPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKPDVSSVLHDVADAE 678

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           + + L  HSEKLA+AFGL+     M IR+VKNLR+CVDCH+A KFIS  T R+I+VRD +
Sbjct: 679 KVHMLSNHSEKLAIAFGLIFVPEEMPIRVVKNLRVCVDCHNATKFISKITGRDILVRDAV 738

Query: 565 RFHHFKRGSCSCLDYW 580
           RFH F  G CSC D+W
Sbjct: 739 RFHKFSNGICSCGDFW 754



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 177/368 (48%), Gaps = 49/368 (13%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSL----------LFYR 95
           LLS +  A  +    R+F  +P  D+  +N LI     A FS              L   
Sbjct: 82  LLSALAHARLLPDMDRLFASMPQRDAVSYNALI-----AGFSGAGAPARAAGAYRALLRE 136

Query: 96  RMIV--SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153
             +V  + + PS  T S ++ + + L    LGR VHC +   G+ +     + LV+ YAK
Sbjct: 137 EAVVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAK 196

Query: 154 -------------------------------SNNVDVARKVFDRMPDKSVVAWNSMISGY 182
                                             V+ AR VF+ M D+  + W +M++G 
Sbjct: 197 MGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGL 256

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            QNG   EA+ +F  MR  GV  D  T   +L AC  L   + G+ +H + +    D N+
Sbjct: 257 TQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNI 316

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            + ++L++MY++C ++  A  +F  M+  N+I+WTAMI GYG +G G EAV +F  M+  
Sbjct: 317 FVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTD 376

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G++PN+ T  +V+S+CA+   ++EG + F  M    GL P +     +V L+G+ G + +
Sbjct: 377 GIKPNDFTLGSVISSCANLASLEEGAQ-FHCMALVSGLRPYITVSSALVTLYGKCGSIED 435

Query: 363 AYKFVKDV 370
           A++   ++
Sbjct: 436 AHRLFDEM 443



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 114/276 (41%), Gaps = 70/276 (25%)

Query: 127 AVHCHVFVS-GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           AVHC V  +  +    +V   L+  YA+S  + +AR++FD MPD ++   N+++S     
Sbjct: 30  AVHCLVLRTLPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHA 89

Query: 186 GFAKEAIGLF--------------------------------NLMRDFG------VNPDS 207
               +   LF                                 L+R+        V P  
Sbjct: 90  RLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSR 149

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA-------------- 253
            T   ++ A + LGD  LGR VH  I+  G        + L++MYA              
Sbjct: 150 ITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDE 209

Query: 254 -----------------RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
                            RC  V +AR +F+ M + + I WT M++G   +G  +EA+++F
Sbjct: 210 MVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVF 269

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
            RMRA GV  +  TF ++L+AC      +EG ++ A
Sbjct: 270 RRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHA 305


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/527 (38%), Positives = 310/527 (58%), Gaps = 1/527 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+++F  +P+ +   +N ++   + +  + +SL F+  M    + P  Y   ++ 
Sbjct: 14  GDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLF 73

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           + CA L  +  GR VH +V  SG D D+ V ++L + Y +   +         +P  ++V
Sbjct: 74  RCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIV 133

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           + N+ ISG  QNG A+ A+  F LMR  GV  ++ T V  + +C+ L  +  G+ +H   
Sbjct: 134 SCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALA 193

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  G+D  V + TSL++MY+RCG +  +  +    S  +++  +AMIS YG HG+G +AV
Sbjct: 194 IKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAV 253

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
            LF +M A G  PN VTF+ +L AC+H+GL  EG   F  M + YGL P V+H+ C+VDL
Sbjct: 254 GLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDL 313

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GR+G LNEA   +   +  +P   +W  +L ACK  K FD+   +AE ++ ++P +   
Sbjct: 314 LGRSGCLNEAEDLILS-MPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSAS 372

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+LSNI A + R + V  VR  M ++ ++K  G S VE+  + + F  GD+SH    EI
Sbjct: 373 YVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREI 432

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
            + L+E+M R R+ GY P+     H++E+EE+E SL +HSEKLA+AF  +    G+ IR+
Sbjct: 433 VECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRV 492

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +KNLR+C DCH AIK +S    REI+VRD  RFHHFK G CSC DYW
Sbjct: 493 MKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 157/311 (50%), Gaps = 7/311 (2%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L+  Y K+ +++ ARK+FD MP ++V  WN+M++G   +G  +E++G F  MR  G+ PD
Sbjct: 6   LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 65

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
                 +   CA L D+  GR VH ++V  GLD ++ + +SL +MY RCG +        
Sbjct: 66  EYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALR 125

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            +  LN+++    ISG   +G    A+E F  MR  GV  N VTFV+ +++C+    + +
Sbjct: 126 ALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQ 185

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G ++ A +  + G+   V     +V ++ R G L ++ +   +  G      + +AM+ A
Sbjct: 186 GQQIHA-LAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTD--LVLCSAMISA 242

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL--AGRMDRVEVVRNIMIQK-GLK 443
              H +    V + + +++   E P     L+ +YA   +G  D       +M +  GL+
Sbjct: 243 YGFHGHGQKAVGLFKQMMAAGAE-PNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQ 301

Query: 444 KHVGYSTVEVD 454
             V + T  VD
Sbjct: 302 PSVKHYTCIVD 312



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 133/282 (47%), Gaps = 5/282 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP      ++ +    L+ +   +QVHA+++ +G  R   + + L  +    GF+   + 
Sbjct: 63  QPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEA 122

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
               +PS +    NT I   ++   +  +L F+  M  + +  +  TF + + SC+ L+ 
Sbjct: 123 ALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAA 182

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +H     +G D  + V  +LV+ Y++   +  + +V        +V  ++MIS 
Sbjct: 183 LAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISA 242

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDV 240
           Y  +G  ++A+GLF  M   G  P+  T + +L AC+  G  D G    E +    GL  
Sbjct: 243 YGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQP 302

Query: 241 NVVLATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMIS 281
           +V   T ++++  R G +++A + I  M  + + + W  ++S
Sbjct: 303 SVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLS 344


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/541 (38%), Positives = 332/541 (61%), Gaps = 16/541 (2%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVS 100
           T ++   C  G +  A+ +F  +P  +   + T+I   ++N + + +       R++   
Sbjct: 257 TNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIA-------RKLFEV 309

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
               +  +++A++K   +   L+        +F +     +    A++  + ++  V  A
Sbjct: 310 MPEKNEVSWTAMLKGYTNCGRLDEA----SELFNAMPIKSVVACNAMILCFGQNGEVPKA 365

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
           R+VFD+M +K    W++MI  YE+ G   +A+ LF +M+  G+ P+  + + VL+ CA L
Sbjct: 366 RQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGL 425

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
            ++D GR +H  +V    D++V +A+ L++MY +CGN++KA+++FD  +  +V+ W ++I
Sbjct: 426 ANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSII 485

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GY  HG G EA+ +FH M   G+ P++VTFV VLSAC++ G V++G  +F SM  +Y +
Sbjct: 486 TGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQV 545

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
              +EH+ CMVDL GRAG LNEA   ++ +  E  A  +W A+LGAC+ H   DL    A
Sbjct: 546 EQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADA-IIWGALLGACRTHMKLDLAEVAA 604

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           + LL +EP+N G +++LSNIYA  GR D V  +R  M  + + K+ G S + V++K + F
Sbjct: 605 KKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKF 664

Query: 461 SMGDKS-HPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALA 519
           + GD S HP  +EI + L+ L G  REAGY P+    +H+++EEE+  SL YHSEKLA+A
Sbjct: 665 TGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVA 724

Query: 520 FGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           +GL++   GM IR++KNLR+C DCH+AIK I+  T REII+RD  RFHHFK GSCSC DY
Sbjct: 725 YGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDY 784

Query: 580 W 580
           W
Sbjct: 785 W 785



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 177/421 (42%), Gaps = 58/421 (13%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           L+S   + G I  A+ +F  +P  +   +  ++    K    +++   + +M   N+   
Sbjct: 166 LVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSW 225

Query: 106 NYTFSAVIKSCAHLSILNLGRAVH-CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
                 +++          GR    C +F    + D+  +  ++  Y +   +  AR +F
Sbjct: 226 TVMLGGLLQE---------GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLF 276

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           D MP ++VV+W +MI+GY QN     A  LF +M +     +  +   +L      G +D
Sbjct: 277 DEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPE----KNEVSWTAMLKGYTNCGRLD 332

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
                 E      +  +VV   ++I  + + G V KAR++FD M E +   W+AMI  Y 
Sbjct: 333 EA---SELFNAMPIK-SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYE 388

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPG 343
             G   +A+ELF  M+  G+RPN  + ++VLS CA    +  G  + A + R ++ L   
Sbjct: 389 RKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDL--D 446

Query: 344 VEHHVCMVDLFGRAGLLNEAYKF-----VKDVI--------------------------- 371
           V     ++ ++ + G L +A +      VKDV+                           
Sbjct: 447 VYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHF 506

Query: 372 -GEKPAPAVWTAMLGACKMHKNFDLGVEV---AEHLLSVEPENPGHYVMLSNIYALAGRM 427
            G  P    +  +L AC    N   G+E+    E    VE +   HY  + ++   AG++
Sbjct: 507 SGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVE-QKIEHYACMVDLLGRAGKL 565

Query: 428 D 428
           +
Sbjct: 566 N 566



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 59/295 (20%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           +L+  Y++   ++ AR VFD M DK++++WNS+++GY QN   +EA  +F+ M       
Sbjct: 103 SLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS------ 156

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
                                            + N +    L++ Y   G +++ARE+F
Sbjct: 157 ---------------------------------ERNTISWNGLVSGYINNGMINEAREVF 183

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D M E NV++WTAM+ GY   G  +EA  LF +M    V    V++  +L      G + 
Sbjct: 184 DRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV----VSWTVMLGGLLQEGRID 239

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAM 383
           E  R+F  M ++      V     M+  + + G L EA    + +  E P   V  WT M
Sbjct: 240 EACRLFDMMPEK-----DVVTRTNMIGGYCQVGRLVEA----RMLFDEMPRRNVVSWTTM 290

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIM 437
           +     ++  D    +A  L  V PE N   +  +   Y   GR+D    + N M
Sbjct: 291 ITGYVQNQQVD----IARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM 341



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 165/375 (44%), Gaps = 53/375 (14%)

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFS--AVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
           S+  +S  S L + R++++    SN+  S  ++I   + L  +   R V    F    D 
Sbjct: 72  SQPGYSMFSGLMFFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVV----FDEMRDK 127

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           ++    ++V  Y ++     A+ +FD+M +++ ++WN ++SGY  NG   EA  +F+ M 
Sbjct: 128 NIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMP 187

Query: 200 DFGV---------------------------NPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           +  V                             +  +   +L    Q G ID    + + 
Sbjct: 188 ERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDM 247

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           +     + +VV  T++I  Y + G + +AR +FD M   NV++WT MI+GY  +     A
Sbjct: 248 MP----EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIA 303

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
            +LF  M       N V++ A+L    + G + E   +F +M      +  V     M+ 
Sbjct: 304 RKLFEVM----PEKNEVSWTAMLKGYTNCGRLDEASELFNAMP-----IKSVVACNAMIL 354

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE--HLLSVEPEN 410
            FG+ G + +A + V D + EK     W+AM+   K+++   L ++  E   ++  E   
Sbjct: 355 CFGQNGEVPKARQ-VFDQMREKD-EGTWSAMI---KVYERKGLELDALELFRMMQREGIR 409

Query: 411 PGHYVMLSNIYALAG 425
           P    ++S +   AG
Sbjct: 410 PNFPSLISVLSVCAG 424



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/181 (18%), Positives = 87/181 (48%), Gaps = 7/181 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+ P+  ++L     L  L   +++HA L+ + +     + + LLS+    G +  A++
Sbjct: 409 RPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQ 468

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F      D  ++N++I   ++     ++L  +  M  S I P + TF  V+ +C++   
Sbjct: 469 VFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGN 528

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQ--AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSM 178
           +  G  +  +   + Y  +  ++  A +V+   ++  ++ A  + ++MP +   + W ++
Sbjct: 529 VKKGLEIF-NSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGAL 587

Query: 179 I 179
           +
Sbjct: 588 L 588


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/529 (39%), Positives = 327/529 (61%), Gaps = 6/529 (1%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI- 102
           T LL +    G + YA+R+F  +P+ +   ++ LI      +  T + L ++ M+   + 
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 221

Query: 103 --SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
             SP+  + ++ +++CA L  L +G  +H  +  SG  +DL    +L++ YAK+  +D A
Sbjct: 222 FLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 279

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
             +FD M  K  V++++++SGY QNG A+EA  +F  M+   V PD+ T V ++ AC+ L
Sbjct: 280 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 339

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             +  GR  H  ++ +GL     +  +LI+MYA+CG +  +R++F+MM   ++++W  MI
Sbjct: 340 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 399

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GYG+HG G EA  LF  M   G  P+ VTF+ +LSAC+H+GLV EG   F  M   YGL
Sbjct: 400 AGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGL 459

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P +EH++CMVDL  R G L+EAY+F++  +  +    VW A+LGAC+++KN DLG +V+
Sbjct: 460 TPRMEHYICMVDLLSRGGFLDEAYEFIQS-MPLRADVRVWVALLGACRVYKNIDLGKKVS 518

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
             +  + PE  G++V+LSNIY+ AGR D    VR I   +G KK  G S +E++   + F
Sbjct: 519 RMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAF 578

Query: 461 SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAF 520
             GD+SHP + EIY+ LD ++   ++ GY P++   + +LEEEE+E +L  HSEKLA+A+
Sbjct: 579 VGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAY 638

Query: 521 GLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHF 569
           G++  S   TI + KNLR+C DCH+ IK IS+   R IIVRD  RFHHF
Sbjct: 639 GILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 157/293 (53%), Gaps = 19/293 (6%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M+   ++P+NYTF   +K+C+ L+  + GRA+H H   +G  +DL V  AL++ Y K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG--LFNLMRDFGVNPDSTTCVCVL 214
           +  A  +F  MP + +VAWN+M++GY  +G    A+   L   M+   + P+++T V +L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVN----------VVLATSLINMYARCGNVSKAREI 264
              AQ G +  G  VH + +   L  N          V+L T+L++MYA+CG++  AR +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA-VLSACAHAGL 323
           FD M   N + W+A+I G+ +    T+A  LF  M A G+   + T +A  L ACA    
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVI 371
           ++ G ++ A + +  G+   +     ++ ++ +AGL+++A        VKD +
Sbjct: 241 LRMGEQLHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTV 292


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/561 (36%), Positives = 326/561 (58%), Gaps = 1/561 (0%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
            L  L+ +H + +   +     +    ++     G + +A+ +FF + +     +N +I 
Sbjct: 431 ELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIG 490

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
            +++      +L FY  M    I P +++  +++ +C  L +L  G+ +H  V  +G + 
Sbjct: 491 GHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEM 550

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           +  V  +L++ Y   +     R  F+ M DK+ V WN+M+SGY QN    EA+ LF  M 
Sbjct: 551 NSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQML 610

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+ PD      +L AC+QL  + LG+ VH F +   L  +  +A SL++MYA+ G + 
Sbjct: 611 SDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLG 670

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            ++ IF+ ++   V +W  MI+G+G+HG G +AVELF  M+    +P+  TF+ VL AC 
Sbjct: 671 HSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACC 730

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           HAGLV EG    A M+  Y L P +EH+ C++D+ GRAG LNEA  F+ + + E+P   +
Sbjct: 731 HAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINE-MPEEPDAKI 789

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W+++L +   + + ++G + AE LL++E      Y++LSN+YA AG+ D V +VR  M  
Sbjct: 790 WSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKD 849

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
             L+K VG S +E+  K Y F  G+ S+P+++EI +  + L  +  E GY P+    +HE
Sbjct: 850 LSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHE 909

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           LEE E+   L+ HSEK+A+ FG + T  G T+RI KNLR+C DCH+A K+IS A  REI+
Sbjct: 910 LEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIV 969

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           +RD  RFHHFK+G CSC DYW
Sbjct: 970 IRDNKRFHHFKKGICSCGDYW 990



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 154/282 (54%), Gaps = 9/282 (3%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVS 100
           T+L+++    G+   ++ +F  + + + F +N L+   +RN   + +  +  F   + V+
Sbjct: 147 TRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHT--FLELISVT 204

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
              P N+TF  +IK+C     ++LG++VH      G   DL V  A++  Y K   +D A
Sbjct: 205 EFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEA 264

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN--LMRDFGVNPDSTTCVCVLAACA 218
            ++FD+MP++++++WNS+I G+ +NGF  EA   F   L    G+ PD  T V +L  C+
Sbjct: 265 VELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCS 324

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
             G++D+G  +H   V  GL   +++  +LI+MY++CG +S+A  +F  +   +V++W +
Sbjct: 325 GEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNS 384

Query: 279 MISGYGMHGYGTEAVELFHR--MRAHGVRPNNVTFVAVLSAC 318
           MI  Y   G+  E  +L  +  M    +  N VT + +L AC
Sbjct: 385 MIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 185/398 (46%), Gaps = 6/398 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H   +  G      +   L+ +    G ++ A  +F  I +     +N++I   S+  F
Sbjct: 335 IHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGF 394

Query: 87  STDSLLFYRRMIVSN--ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             ++    R+M +    +  +  T   ++ +C   S L   RA+H +     +     + 
Sbjct: 395 VFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELIN 454

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            A +  YAK  ++  A  VF  M  KSV +WN++I G+ QNG   +A+  +  M   G+ 
Sbjct: 455 NAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGIL 514

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD  + V +L AC +LG +  G+ +H F++  GL++N  +A SL+++Y  C      R  
Sbjct: 515 PDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTY 574

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ M + N + W AM+SGY  +    EA+ LF +M + G+ P+ +   ++L AC+    +
Sbjct: 575 FETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSAL 634

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
             G  V     +   L+        ++D++ ++G L  + +    + G++ A   W  M+
Sbjct: 635 GLGKEVHCFALKN-SLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVAS--WNVMI 691

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
               +H   +  VE+ E +   + + P  +  L  + A
Sbjct: 692 TGFGVHGQGNKAVELFEDMKRSDKQ-PDRFTFLGVLQA 728



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 146/281 (51%), Gaps = 11/281 (3%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSG-YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
           +++ C     + +GR +   + VS  +  D  +   L+  Y+       +R VFDR+ +K
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           ++  WN+++SGY +N    EAI  F  L+      PD+ T  C++ AC    DI LG+ V
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV 232

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           H   V  GL +++ +  ++I +Y +CG + +A E+FD M E N+I+W ++I G+  +G+ 
Sbjct: 233 HGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFW 292

Query: 290 TEAVELFHRM--RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
            EA   F  +     G+ P+  T V +L  C+  G V  G  V   M  + GL+   E  
Sbjct: 293 LEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVG-MVIHGMAVKLGLVH--ELM 349

Query: 348 VC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           VC  ++D++ + G L+EA    + +  E  +   W +M+GA
Sbjct: 350 VCNALIDMYSKCGCLSEAAILFRKI--ENKSVVSWNSMIGA 388



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 194/437 (44%), Gaps = 45/437 (10%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP +  +  ++KA      +   + VH   +  G      +   +++L    GF+  A  
Sbjct: 207 QPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVE 266

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS--NISPSNYTFSAVIKSCAHL 119
           +F  +P  +   +N+LI   S+  F  ++   +R ++ S   + P   T   ++  C+  
Sbjct: 267 LFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGE 326

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
             +++G  +H      G   +L V  AL++ Y+K   +  A  +F ++ +KSVV+WNSMI
Sbjct: 327 GNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMI 386

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPD-----STTCVCVLAACAQLGDIDLGRWVHEFIV 234
             Y + GF  E    F+L+R   +  +       T + +L AC +  ++   R +H + +
Sbjct: 387 GAYSREGFVFET---FDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSL 443

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
                   ++  + I  YA+CG++  A  +F  M+  +V +W A+I G+  +G   +A++
Sbjct: 444 RHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALD 503

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV-----------------------F 331
            +  M   G+ P++ + V++L AC   GL+Q G  +                       F
Sbjct: 504 FYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYF 563

Query: 332 ASMRQEYGL----LPGVEHHVC---MVDLFGRAGLLNEAYKFVKDVI--GEKPAPAVWTA 382
              +  YG       G ++ VC   M+  + +  L NEA    + ++  G +P      +
Sbjct: 564 HCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIAS 623

Query: 383 MLGACKMHKNFDLGVEV 399
           +LGAC       LG EV
Sbjct: 624 ILGACSQLSALGLGKEV 640


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/619 (36%), Positives = 349/619 (56%), Gaps = 54/619 (8%)

Query: 8   SPAYEAILKAGPRLKPLQQVHAHLIVAGY-GRSRSML-TKLLSLVCDAGFITYAQRIFFC 65
           S A E+ L  G RL      HA +I  G  G   + L   LL      G    A+++F  
Sbjct: 22  SCARESSLDIGERL------HATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDE 75

Query: 66  IPSP--DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123
           IP    D+  + TL+    + N S ++LL +  M    + P   T   +   CA L  + 
Sbjct: 76  IPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVV 135

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF------------------- 164
           +G   H  +   G         A+++ YAKS  +  AR+VF                   
Sbjct: 136 VGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVI 195

Query: 165 ------------DRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCV 211
                       D MP+++ VAW  MI+GY  +G  +E+  L   ++ D  +  +  T  
Sbjct: 196 RSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLC 255

Query: 212 CVLAACAQLGDIDLGRWVHEFIVG-QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
            +L AC+Q GD+ +GRWVH + +  +  ++N+++ T++++MYA+CG +  A + F  M +
Sbjct: 256 SILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQ 315

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            NV++W AM+SG  MHG G  A+++F +M     +P++VTF +VLSAC+H+GLV +G   
Sbjct: 316 RNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFY 374

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           F ++   YG+ P VEH+ CMVDL GRAG L EA   V++ +  +P   V  ++LG+C +H
Sbjct: 375 FGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVRE-MPIRPNEVVLGSLLGSCSIH 433

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
               LG  + + L+ ++P+N  ++++LSN+YALAG+ +R   +R ++ ++G+KK  G S+
Sbjct: 434 GKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSS 493

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPES--------ESAMHEL-E 501
           + V  + + FS GDKSHP T E+Y  LDE++ R R AGY P +        +S   +L E
Sbjct: 494 IHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVE 553

Query: 502 EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
           +EE+E +L  HSEKLA+ FGL+ T PG+ + I KNLR+C DCHSAIK +S   NREI++R
Sbjct: 554 QEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIR 613

Query: 562 DRLRFHHFKRGSCSCLDYW 580
           DR RFH FK GSCSC DYW
Sbjct: 614 DRNRFHCFKEGSCSCCDYW 632



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 15/180 (8%)

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLD--VNVVLATSLINMYARCGNVSKAREIFDMM-- 268
           +L +CA+   +D+G  +H  I+  G+       L  +L+  YA CG   +AR++FD +  
Sbjct: 19  LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV---Q 325
           S  + + WT ++  +  H    EA+ +F  MR  GV+P+ VT V +   CA  G V    
Sbjct: 79  SHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGA 138

Query: 326 EGHRVFASMRQEYGLLPGVEHHV-CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           +GH     M      L GVE     ++D++ ++GL+ EA +   ++ G+  +   WT +L
Sbjct: 139 QGHGCMVKMG-----LGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQ--SVVSWTVIL 191


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/527 (38%), Positives = 310/527 (58%), Gaps = 1/527 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+++F  +P+ +   +N ++   + +  + +SL F+  M    + P  Y   ++ 
Sbjct: 122 GDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLF 181

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
           + CA L  +  GR VH +V  SG D D+ V ++L + Y +   +         +P  ++V
Sbjct: 182 RCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIV 241

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
           + N+ ISG  QNG A+ A+  F LMR  GV  ++ T V  + +C+ L  +  G+ +H   
Sbjct: 242 SCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALA 301

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  G+D  V + TSL++MY+RCG +  +  +    S  +++  +AMIS YG HG+G +AV
Sbjct: 302 IKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAV 361

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
            LF +M A G  PN VTF+ +L AC+H+GL  EG   F  M + YGL P V+H+ C+VDL
Sbjct: 362 GLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDL 421

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GR+G LNEA   +   +  +P   +W  +L ACK  K FD+   +AE ++ ++P +   
Sbjct: 422 LGRSGCLNEAEDLILS-MPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSAS 480

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+LSNI A + R + V  VR  M ++ ++K  G S VE+  + + F  GD+SH    EI
Sbjct: 481 YVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREI 540

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
            + L+E+M R R+ GY P+     H++E+EE+E SL +HSEKLA+AF  +    G+ IR+
Sbjct: 541 VECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRV 600

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +KNLR+C DCH AIK +S    REI+VRD  RFHHFK G CSC DYW
Sbjct: 601 MKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 157/311 (50%), Gaps = 7/311 (2%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L+  Y K+ +++ ARK+FD MP ++V  WN+M++G   +G  +E++G F  MR  G+ PD
Sbjct: 114 LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 173

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
                 +   CA L D+  GR VH ++V  GLD ++ + +SL +MY RCG +        
Sbjct: 174 EYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALR 233

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            +  LN+++    ISG   +G    A+E F  MR  GV  N VTFV+ +++C+    + +
Sbjct: 234 ALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQ 293

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G ++ A +  + G+   V     +V ++ R G L ++ +   +  G      + +AM+ A
Sbjct: 294 GQQIHA-LAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTD--LVLCSAMISA 350

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL--AGRMDRVEVVRNIMIQK-GLK 443
              H +    V + + +++   E P     L+ +YA   +G  D       +M +  GL+
Sbjct: 351 YGFHGHGQKAVGLFKQMMAAGAE-PNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQ 409

Query: 444 KHVGYSTVEVD 454
             V + T  VD
Sbjct: 410 PSVKHYTCIVD 420



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 125/259 (48%), Gaps = 2/259 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVHA+++ +G  R   + + L  +    GF+   +     +PS +    NT I   ++ 
Sbjct: 194 RQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQN 253

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             +  +L F+  M  + +  +  TF + + SC+ L+ L  G+ +H     +G D  + V 
Sbjct: 254 GDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVM 313

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            +LV+ Y++   +  + +V        +V  ++MIS Y  +G  ++A+GLF  M   G  
Sbjct: 314 TSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAE 373

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKARE 263
           P+  T + +L AC+  G  D G    E +    GL  +V   T ++++  R G +++A +
Sbjct: 374 PNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAED 433

Query: 264 -IFDMMSELNVIAWTAMIS 281
            I  M  + + + W  ++S
Sbjct: 434 LILSMPVQPDGVIWKTLLS 452



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 13/155 (8%)

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
           +L A A LGD    R + E I  +    NV+    LI  Y + G++  AR++FD M   N
Sbjct: 83  LLLAYADLGDFPTARGLFERIPKR----NVMSWNILIGGYVKNGDLETARKLFDEMPARN 138

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           V  W AM++G    G   E++  F  MR  G++P+     ++   CA    V  G +V A
Sbjct: 139 VATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHA 198

Query: 333 SMRQEYGLLPGVEHHVC----MVDLFGRAGLLNEA 363
                Y +  G++  +C    +  ++ R G L + 
Sbjct: 199 -----YVVRSGLDRDMCVGSSLAHMYMRCGFLRDG 228



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 5/98 (5%)

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
           A  L+  YA  G+   AR +F+ + + NV++W  +I GY  +G    A +LF  M A  V
Sbjct: 80  ANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNV 139

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
                T+ A+++   ++GL +E    F +MR+E G+ P
Sbjct: 140 ----ATWNAMVAGLTNSGLNEESLGFFFAMRRE-GMQP 172


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/535 (38%), Positives = 327/535 (61%), Gaps = 2/535 (0%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           ++S   + G I  A+++F  +P  D+F +N +I       +  ++L  +R M  +  S  
Sbjct: 135 MISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNC 194

Query: 106 N-YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           N +T S+ + + A +S L  G+ +H ++  SG + D  V  AL++ Y K  +++ AR +F
Sbjct: 195 NMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIF 254

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           D+M DK +V+W +MI    ++G  KE   LF  +   GV P+  T   VL ACA L    
Sbjct: 255 DQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQ 314

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
           +G+ VH ++   G D     A++L+++Y++CGN   AR +F+ M   ++++WT++I GY 
Sbjct: 315 MGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYA 374

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
            +G    A++ F  +   G +P+ +TFV VLSAC HAGLV  G   F S+++++GL+   
Sbjct: 375 QNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTA 434

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           +H+ C++DL  R+G   EA   + D +  KP   +W ++LG C++H N +L    A+ L 
Sbjct: 435 DHYACVIDLLARSGRFKEAENII-DNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALF 493

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
            +EPENP  Y+ LSNIYA AG       VRN M  +G+ K  G S +E+ ++ ++F +GD
Sbjct: 494 ELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGD 553

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
            SHP  ++I++YL EL  + +E GYV ++   +H++EEE++E ++ YHSEKLA+AFG++ 
Sbjct: 554 TSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIIS 613

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           TSPG  I++ KNLR CVDCH+A+K+IS    R+IIVRD  RFH F  GSCSC DY
Sbjct: 614 TSPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 155/315 (49%), Gaps = 9/315 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H +LI +G      + T LL L    G +  A+ IF  +   D   + T+I R  + 
Sbjct: 216 KEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFED 275

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +    +R ++ S + P+ YTF+ V+ +CA L+   +G+ VH ++   GYD      
Sbjct: 276 GRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAA 335

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           +ALV+ Y+K  N + AR+VF++MP   +V+W S+I GY QNG    A+  F  +   G  
Sbjct: 336 SALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTK 395

Query: 205 PDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           PD  T V VL+AC   G +D+G  + H      GL         +I++ AR G   +A  
Sbjct: 396 PDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAEN 455

Query: 264 IFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRA--HGVRPNN-VTFVAVLSACA 319
           I D M  + +   W +++ G  +HG     +EL  R       + P N  T++ + +  A
Sbjct: 456 IIDNMPMKPDKFLWASLLGGCRIHG----NIELAERAAKALFELEPENPATYITLSNIYA 511

Query: 320 HAGLVQEGHRVFASM 334
           +AGL  E  +V   M
Sbjct: 512 NAGLWTEETKVRNDM 526



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 176/367 (47%), Gaps = 20/367 (5%)

Query: 45  KLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSN 101
           +++ L C    +  A      IP P   L++TLI   +R+ K            + + ++
Sbjct: 37  EIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELG--------KRVHAH 88

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCH-VFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
              SN+    VI +         G  V    +F      DL     +++ YA    ++ A
Sbjct: 89  TKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQA 148

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVNPDSTTCVCVLAACAQ 219
           RK+FD MP +   +WN++ISGY   G+  EA+ LF +M++    N +  T    LAA A 
Sbjct: 149 RKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAA 208

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           +  +  G+ +H +++  GL+++ V+ T+L+++Y +CG++++AR IFD M++ ++++WT M
Sbjct: 209 ISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTM 268

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           I      G   E   LF  +   GVRPN  TF  VL+ACA     Q G  V   M +  G
Sbjct: 269 IHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTR-VG 327

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGV 397
             P       +V ++ + G    A +    V  + P P +  WT+++     +   D+ +
Sbjct: 328 YDPFSFAASALVHVYSKCGNTETARR----VFNQMPRPDLVSWTSLIVGYAQNGQPDMAL 383

Query: 398 EVAEHLL 404
           +  E LL
Sbjct: 384 QFFESLL 390


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/528 (39%), Positives = 312/528 (59%), Gaps = 4/528 (0%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS---NISPSNYTFSAV 112
           +  A+ +F  +P  D F ++ ++  + +      +L  YRRM+     + + + +T S+ 
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSA 168

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           + +         GR +HCHV   G D+D  V +AL + YAK   +D AR VFDRMP + V
Sbjct: 169 LAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDV 228

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           V+W +M+  Y   G   E   LF  M   G+ P+  T   VL ACA+     LG+ VH  
Sbjct: 229 VSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGR 288

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           +       +    ++L++MY++ G++  A  +F  M + ++++WTAMISGY  +G   EA
Sbjct: 289 MAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEA 348

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           +  F  + + G RP++VTFV VLSACAHAGLV +G  +F S++ +YG+    +H+ C++D
Sbjct: 349 LHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVID 408

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           L  R+GL   A   + + +  KP   +W ++LG C++HKN  L    AE L  +EPENP 
Sbjct: 409 LLSRSGLFERAEDMI-NTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPA 467

Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
            YV L+NIYA  G  D VE +R  M  +G+ K    S +EV  + ++F +GDKSHP   E
Sbjct: 468 TYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEE 527

Query: 473 IYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIR 532
           IY  L +L  + RE GYV ++   +H++E+E+++  + YHSE+LA+AFG++ T  G  I+
Sbjct: 528 IYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIK 587

Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           + KNLR+C DCH+ IK IS    REIIVRD  RFHHFK GSCSC DYW
Sbjct: 588 VFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/617 (35%), Positives = 346/617 (56%), Gaps = 42/617 (6%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGY-------GRSRSMLTKLLSLV- 50
           + K+P +  Y  +++   + + L++   VH H+  +G+        R   M  K  SLV 
Sbjct: 81  RAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVD 140

Query: 51  -----------------------CDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFS 87
                                   + G +  A+ +F  +P  DS+ +  ++    K +  
Sbjct: 141 ARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQP 200

Query: 88  TDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
            ++L+ Y  M  V N  P+ +T S+ + + A +  +  G+ +H H+  +G DSD  + ++
Sbjct: 201 EEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSS 260

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ Y K   +D AR +FD++ DK VV+W SMI  Y ++   +E   LF+ +      P+
Sbjct: 261 LMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPN 320

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T   VL ACA L   +LGR VH ++   G D     ++SLI+MY +CGN+  AR + D
Sbjct: 321 EYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVD 380

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
              + ++++ T++I GY  +G   EA++ F  +   G +P++VTFV VLSAC HAGLV++
Sbjct: 381 GCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEK 440

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE---KPAPAVWTAM 383
           G   F S+ +++ L    +H+ C+VDL  R+G   +    +K V+ E   KP+  +W ++
Sbjct: 441 GLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQ----LKSVLSEMPMKPSKFLWASV 496

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           LG C  + N DL  E A+ L  +EPENP  YV ++NIYA AG+ +    +R  M + G+ 
Sbjct: 497 LGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGIT 556

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K  G S  E+ +K ++F   D SHP  N+I ++L EL  + +E GYVP +   +H++E+E
Sbjct: 557 KKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFLGELRKKMKEEGYVPATSLVLHDVEDE 616

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
           ++E +L YHSEKLA+AF ++ T  G  I++ KNLR CVDCHSAIKFIS  T R+I +RD 
Sbjct: 617 QKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHSAIKFISKITKRKITIRDS 676

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFH F+ G CSC DYW
Sbjct: 677 TRFHCFENGQCSCRDYW 693


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/559 (36%), Positives = 330/559 (59%), Gaps = 4/559 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRN 81
           +++H+ +I +G      +   L+ +    G +  A+++F  +   +   +  L+   +R 
Sbjct: 282 KELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRG 341

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
                     +F   ++   ++P+ +TFS V+K+CA L   + G  VH      G  +  
Sbjct: 342 GGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAID 401

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V   LV+ YAKS  ++ ARK FD + +K++V+   +     ++        L   +   
Sbjct: 402 CVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYV 461

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G    S T   +L+  A +G I  G  +H  +V  G   ++ +  +LI+MY++CGN   A
Sbjct: 462 GSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAA 521

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
            ++F+ M + NVI WT++I+G+  HG+ ++A+ELF+ M   GV+PN+VT++AVLSAC+H 
Sbjct: 522 LQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHV 581

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
           GL+ E  + F SMR  +G++P +EH+ CMVDL GR+GLL+EA +F+  +  +  A  VW 
Sbjct: 582 GLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADA-LVWR 640

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
             LG+C++H+N  LG   A+ +L  EP +P  Y++LSN+YA  GR + V  +R  M QK 
Sbjct: 641 TFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQ 700

Query: 442 LKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE 501
           + K  G S +EV+ + + F +GD  HP   +IY+ LDEL  + +  GYVP ++  +H++E
Sbjct: 701 ITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVE 760

Query: 502 EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
           +E++E  L  HSEKLA+AF L+ T     IR+ KNLR+C DCH+AIK+IS+ + REI+VR
Sbjct: 761 DEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVR 820

Query: 562 DRLRFHHFKRGSCSCLDYW 580
           D  RFHH K G+CSC DYW
Sbjct: 821 DANRFHHMKDGTCSCNDYW 839



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/236 (36%), Positives = 140/236 (59%), Gaps = 8/236 (3%)

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY-DSDLHVQAALVNF 150
           +F + ++   + P+ Y F+AVI++C        G  +   V  +GY DS + V   L++ 
Sbjct: 142 MFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDM 201

Query: 151 YAKS---NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPD 206
           + K     +++ ARKVFD+M +K+VV W  MI+   Q G+  EAI LF  ++   G  PD
Sbjct: 202 FVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPD 261

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T   +++ CA++  + LG+ +H +++  GL +++ +  SL++MYA+CG V +AR++FD
Sbjct: 262 RFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFD 321

Query: 267 MMSELNVIAWTAMISGY--GMHGYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACA 319
            M E NV++WTA+++GY  G  GY  EA+ +F  M    GV PN  TF  VL ACA
Sbjct: 322 GMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACA 377



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 175/389 (44%), Gaps = 64/389 (16%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T S ++K C      +LG+ +H  +  S    D  +  +L+  Y+KSN+   A  +F  M
Sbjct: 54  TSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSM 113

Query: 168 PD--KSVVAWNSMISGYEQNGFAKEAIGLFN--LMRDFGVNPDSTTCVCVLAACAQLGDI 223
            +  + VV+++S+IS +  N    +A+ +F+  L++D GV P+      V+ AC + G  
Sbjct: 114 ENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQD-GVYPNEYCFTAVIRACLKGGFF 172

Query: 224 DLGRWVHEFIVGQG-LDVNVVLATSLINMYAR---CGNVSKAREIFDMMSELNVIAWTAM 279
             G  +  F++  G  D +V +   LI+M+ +     ++  AR++FD M E NV+ WT M
Sbjct: 173 KTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLM 232

Query: 280 ISGYGMHGYGTEAVELFHRMR-AHGVRPNNVTFVAVLSACAH------------------ 320
           I+    +GY  EA++LF  M  + G  P+  T   ++S CA                   
Sbjct: 233 ITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSG 292

Query: 321 -----------------AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF--GRAGLLN 361
                             GLVQE  +VF  MR+       V     +V+ +  G  G   
Sbjct: 293 LVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREH-----NVMSWTALVNGYVRGGGGYER 347

Query: 362 EAYKFVKDVI---GEKPAPAVWTAMLGACKMHKNFDLGVEVAEH-----LLSVEPENPGH 413
           EA +   +++   G  P    ++ +L AC    +FD G +V        L +++    G 
Sbjct: 348 EAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNG- 406

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
              L ++YA +GRM+      +++ +K L
Sbjct: 407 ---LVSVYAKSGRMESARKCFDVLFEKNL 432


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 322/539 (59%), Gaps = 3/539 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L+SL    G  T A  +F  +   D   ++ ++   ++     ++L  +R+M +  ++
Sbjct: 115 TALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVA 174

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P+  T  + + +CA L  L  G  +H  V   G  S + V  ALVN Y K   ++ A + 
Sbjct: 175 PNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEA 234

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F ++ +K+VVAW+++ + Y +N   ++AI + + M   G+ P+STT V VL ACA +  +
Sbjct: 235 FGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAAL 294

Query: 224 DLGRWVHEFI--VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
             GR +HE I  +G GL+ +V + T+L+NMY++CGN++ A  +FD ++ L+++ W ++I+
Sbjct: 295 KQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIA 354

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
               HG   +A+ELF RMR  G++P  +TF +VL AC+HAG++ +G + F S   ++G+ 
Sbjct: 355 TNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIF 414

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P  EH  CMVDL GRAG + ++   +  +  E P P  W A LGAC+ ++N D  +  AE
Sbjct: 415 PEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFE-PHPVAWMAFLGACRTYRNMDGAIWAAE 473

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
           +L  ++P     YV+LSN+YA AGR   V  +R  M      K  G S +EV  + + F 
Sbjct: 474 NLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFI 533

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
            GD  HP   EI+  L  L    + AGYVP++E  +H++++E +E  + YHSEKLA+AF 
Sbjct: 534 SGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFA 593

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           L+ T  G  IR+VKNLR+C DCH+A KFIS   NREI+VRD  RFH F+ G+CSC DYW
Sbjct: 594 LLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 226/467 (48%), Gaps = 35/467 (7%)

Query: 35  GYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFY 94
           G+ R+R +   L+ L         A  +F  I S + F +  ++   ++        LF+
Sbjct: 5   GWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFF 64

Query: 95  RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154
           R M++  I+P     S  + +C     + +GR++   +  +G + +  VQ ALV+ Y K 
Sbjct: 65  RGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKL 124

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
            +   A  VF RM  + VVAW++M++ Y +NG  +EA+GLF  M   GV P+  T V  L
Sbjct: 125 GHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGL 184

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
            ACA LGD+  G  +H+ +  QG+   VV+ T+L+N+Y +CG +  A E F  + E NV+
Sbjct: 185 DACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVV 244

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
           AW+A+ + Y  +    +A+ + HRM   G+ PN+ TFV+VL ACA    +++G R+   +
Sbjct: 245 AWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERI 304

Query: 335 RQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
              + L  G+E  V     +V+++ + G L  A      +        +W +++     H
Sbjct: 305 ---HVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKI--AHLDLVLWNSLIATNAQH 359

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
              +  +E+ E  + +E   P      S ++A +                    H G   
Sbjct: 360 GQTEKALELFER-MRLEGLQPTIITFTSVLFACS--------------------HAG--M 396

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM 497
           ++  +K+++  +GD       E +  + +L+GR   AG++ +SE  +
Sbjct: 397 LDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGR---AGWIVDSEDLL 440


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/556 (38%), Positives = 321/556 (57%), Gaps = 1/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H  ++ A       +   L+ +    G +  A+++F  IP  D  L+N LI   S  
Sbjct: 323 RQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHG 382

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++L  + RM       +  T +AV+KS A L  ++  R VH      G+ SD HV 
Sbjct: 383 AQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVV 442

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             L++ Y K + ++ A +VF++     ++A+ SMI+   Q    ++AI LF  M   G++
Sbjct: 443 NGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLD 502

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD      +L ACA L   + G+ VH  ++ +    +V    +L+  YA+CG++  A   
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLA 562

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  + E  V++W+AMI G   HG+G  A+++FHRM    + PN++T  +VL AC HAGLV
Sbjct: 563 FSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLV 622

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            E  R F SM++ +G+    EH+ CM+DL GRAG L++A + V  +  +  A AVW A+L
Sbjct: 623 DEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNA-AVWGALL 681

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            A ++H++ +LG   AE L  +EPE  G +V+L+N YA AG  D V  VR +M    +KK
Sbjct: 682 AASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKK 741

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
               S VE+  K + F +GDKSHP   +IY  LDEL     +AGYVP  E  +H++++ E
Sbjct: 742 EPAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNE 801

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E  L +HSE+LA+AF L+ T  G  IR+ KNLR+C DCH+A KFIS   +REII+RD  
Sbjct: 802 KELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDIN 861

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF+ G+CSC DYW
Sbjct: 862 RFHHFRDGACSCRDYW 877



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 140/540 (25%), Positives = 251/540 (46%), Gaps = 65/540 (12%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF---FCIPSPD 70
           +LK  P      Q+HA  +  G G    +   L+++    GF+  A+ +F    C    +
Sbjct: 109 VLKCAPDAGFGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGC--ERN 166

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
           +  +N L+    K +  + ++  +  M+   + P+ + FS V+ +C     L  GR VH 
Sbjct: 167 TVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHA 226

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
            V  +GYD D+    ALV+ Y+K  ++ +A  VF ++P+  VV+WN+ ISG   +G  + 
Sbjct: 227 MVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQH 286

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ L   M+  G+ P+  T   +L ACA  G  +LGR +H F+V    D +  +A  L++
Sbjct: 287 ALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVD 346

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MYA+ G +  A+++FD + + +++ W A+ISG        EA+ LF RMR  G   N  T
Sbjct: 347 MYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTT 406

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKFVK 368
             AVL + A    + +  +V A + ++ G L   + HV   ++D + +   LN AY+  +
Sbjct: 407 LAAVLKSTASLEAISDTRQVHA-LAEKLGFLS--DSHVVNGLIDSYWKCDCLNYAYRVFE 463

Query: 369 -----DVI----------------------------GEKPAPAVWTAMLGACKMHKNFDL 395
                D+I                            G  P P V +++L AC     ++ 
Sbjct: 464 KHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQ 523

Query: 396 GVEVAEHLLSVEPEN---PGHYVMLSNIYALAGRMDRVEVVRNIMIQK----------GL 442
           G +V  HL+  +  +    G+ ++ +  YA  G ++  ++  + + +K          GL
Sbjct: 524 GKQVHAHLIKRQFMSDVFAGNALVYT--YAKCGSIEDADLAFSGLPEKGVVSWSAMIGGL 581

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
            +H G+    +D    +F      H + N I   +  ++  C  AG V E++   + ++E
Sbjct: 582 AQH-GHGKRALD----VFHRMVDEHISPNHI--TMTSVLCACNHAGLVDEAKRYFNSMKE 634



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 208/438 (47%), Gaps = 9/438 (2%)

Query: 5   QPHSPAYEAILKA--GPR-LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP+   +  ++ A  G R L+  ++VHA +I  GY +       L+ +    G I  A  
Sbjct: 199 QPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAV 258

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  D   +N  I           +L    +M  S + P+ +T S+++K+CA    
Sbjct: 259 VFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGA 318

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
            NLGR +H  +  +  DSD ++   LV+ YAK   +D A+KVFD +P + +V WN++ISG
Sbjct: 319 FNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISG 378

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
                   EA+ LF  MR  G + + TT   VL + A L  I   R VH      G   +
Sbjct: 379 CSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSD 438

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +   LI+ Y +C  ++ A  +F+     ++IA+T+MI+      +G +A++LF  M  
Sbjct: 439 SHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLR 498

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ P+     ++L+ACA     ++G +V A + +    +  V     +V  + + G + 
Sbjct: 499 KGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ-FMSDVFAGNALVYTYAKCGSIE 557

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           +A       + EK   + W+AM+G    H +    ++V  H +  E  +P H  M S + 
Sbjct: 558 DA-DLAFSGLPEKGVVS-WSAMIGGLAQHGHGKRALDVF-HRMVDEHISPNHITMTSVLC 614

Query: 422 AL--AGRMDRVEVVRNIM 437
           A   AG +D  +   N M
Sbjct: 615 ACNHAGLVDEAKRYFNSM 632



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 187/366 (51%), Gaps = 15/366 (4%)

Query: 26  QVHAHLIVAG-YGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            +HAHL+ +G +   R+    LLS          A+R+F  IP P    +++L+   S  
Sbjct: 25  HIHAHLLKSGLFAVFRN---HLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNN 81

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               D+L  +R M   ++  + +    V+K CA  +    G  +H     +G   D+ V 
Sbjct: 82  AMPRDALGAFRSMRSCSVRCNEFVLPVVLK-CAPDA--GFGTQLHALAMATGLGGDIFVA 138

Query: 145 AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
            ALV  Y     VD AR VFD    +++ V+WN ++S Y +N     A+ +F  M   GV
Sbjct: 139 NALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGV 198

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            P+     CV+ AC    D++ GR VH  ++  G D +V  A +L++MY++ G++  A  
Sbjct: 199 QPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAV 258

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +F  + E +V++W A ISG  +HG+   A+EL  +M++ G+ PN  T  ++L ACA +G 
Sbjct: 259 VFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGA 318

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
              G ++   M +        ++++   +VD++ + GLL++A K V D I ++    +W 
Sbjct: 319 FNLGRQIHGFMVKANA---DSDNYIAFGLVDMYAKHGLLDDAKK-VFDWIPQRDL-VLWN 373

Query: 382 AMLGAC 387
           A++  C
Sbjct: 374 ALISGC 379



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 147/306 (48%), Gaps = 18/306 (5%)

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G  +H H+  SG  +    +  L++FY+K      AR+VFD +PD   V+W+S+++ Y  
Sbjct: 23  GAHIHAHLLKSGLFAVF--RNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           N   ++A+G F  MR   V  +      VL  CA   D   G  +H   +  GL  ++ +
Sbjct: 81  NAMPRDALGAFRSMRSCSVRCNEFVLPVVL-KCAP--DAGFGTQLHALAMATGLGGDIFV 137

Query: 245 ATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           A +L+ MY   G V +AR +FD    E N ++W  ++S Y  +   + AV++F  M   G
Sbjct: 138 ANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGG 197

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           V+PN   F  V++AC  +  ++ G +V A M    G    V     +VD++ + G +   
Sbjct: 198 VQPNEFGFSCVVNACTGSRDLEAGRKVHA-MVIRTGYDKDVFTANALVDMYSKLGDI--- 253

Query: 364 YKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSN 419
            +    V G+ P   V  W A +  C +H +    +E+   LL ++     P  + + S 
Sbjct: 254 -RMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALEL---LLQMKSSGLVPNVFTLSSI 309

Query: 420 IYALAG 425
           + A AG
Sbjct: 310 LKACAG 315


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/575 (37%), Positives = 331/575 (57%), Gaps = 9/575 (1%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP-DSF 72
           I   G  +  ++Q+HA  +V G     S+   L++     GF+  A+RIF  +    D  
Sbjct: 147 ITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEV 206

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
            +N++++   +    + +L  Y  M V  +    +T ++V+ +  ++  L  G   H  +
Sbjct: 207 SWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKL 266

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDV-ARKVFDRMPDKSVVAWNSMISGYE-QNGFAKE 190
             SGY  + HV + L++ Y+K     +  RKVFD + +  +V WN+MISGY      + E
Sbjct: 267 IKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDE 326

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN-VVLATSLI 249
           A+  F  ++  G  PD  + VCV++AC+ +     GR VH   +   +  N + +  +LI
Sbjct: 327 ALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALI 386

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
            MY++CGN+  A+ +FD M E N +++ +MI+GY  HG G +++ LF RM      P N+
Sbjct: 387 AMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNI 446

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           TF++VL+ACAH G V++G   F  M+Q++G+ P   H  CM+DL GRAG L+EA + + +
Sbjct: 447 TFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLI-E 505

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
            I   P    W+A+LGAC++H N +L ++ A  LL ++P N   YVML+NIY+  GR+  
Sbjct: 506 TIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQD 565

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
              VR +M  +G+KK  G S +EV+++ ++F   D  HP   +I +YL+E+M + ++ GY
Sbjct: 566 AASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGY 625

Query: 490 VPESESAM----HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
            PE  SA       + + E E  L +HSEKLA++FGLM T  G  I + KNLR+CVDCH+
Sbjct: 626 TPEVRSASVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHN 685

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           AIK+IS    REI VRD  RFH FK G CSC  YW
Sbjct: 686 AIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 212/424 (50%), Gaps = 29/424 (6%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           L+S      ++  A ++F  +P PDS  +NTLI   ++   +  +   +  M  + +   
Sbjct: 80  LISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMD 139

Query: 106 NYTFSAVIKSCAHLSILNLG--RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
            +T S +I +C     +N+G  R +H    V+G DS + V  AL+  Y+K+  +  AR++
Sbjct: 140 GFTLSGIITACG----INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRI 195

Query: 164 FDRMP-DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           F  +  D+  V+WNSM+  Y Q+    +A+ L+  M   G+  D  T   VL A   + D
Sbjct: 196 FHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQD 255

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN-VSKAREIFDMMSELNVIAWTAMIS 281
           +  G   H  ++  G   N  + + LI++Y++CG  +   R++FD +S  +++ W  MIS
Sbjct: 256 LLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMIS 315

Query: 282 GYGMH-GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           GY ++     EA+E F +++  G RP++ + V V+SAC++     +G       RQ +GL
Sbjct: 316 GYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQG-------RQVHGL 368

Query: 341 -----LPG--VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
                +P   +  +  ++ ++ + G L +A K + D + E    + + +M+     H   
Sbjct: 369 ALKLDIPSNRISVNNALIAMYSKCGNLRDA-KTLFDTMPEHNTVS-YNSMIAGYAQHGMG 426

Query: 394 DLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVEVVRNIMIQK-GLKKHVGYST 450
              + + + +L ++   P +   +S + A A  GR++  ++  N+M QK G++   G+ +
Sbjct: 427 FQSLHLFQRMLEMDF-TPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFS 485

Query: 451 VEVD 454
             +D
Sbjct: 486 CMID 489



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 135/271 (49%), Gaps = 7/271 (2%)

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           VF   +D ++     L++ YAK + V+VA ++FD MP    V++N++I+ Y + G  + A
Sbjct: 65  VFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPA 124

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
             LF  MR+  ++ D  T   ++ AC    ++ L R +H   V  GLD  V +  +LI  
Sbjct: 125 FQLFLEMREAFLDMDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGNALITS 182

Query: 252 YARCGNVSKAREIFDMMSE-LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           Y++ G + +AR IF  +SE  + ++W +M+  Y  H  G++A+EL+  M   G+  +  T
Sbjct: 183 YSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFT 242

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
             +VL+A  +   +  G +  A + +  G          ++DL+ + G      + V D 
Sbjct: 243 LASVLTAFTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDE 301

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           I   P   +W  M+    +++  DL  E  E
Sbjct: 302 I-SNPDLVLWNTMISGYSLYE--DLSDEALE 329



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           L  C    D+  G+ +H   +   +  +  L+   + +Y++C  +S AR +FD   + NV
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNV 74

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
            ++  +IS Y    Y   A +LF  M     +P++V++  +++A A  G  Q   ++F  
Sbjct: 75  FSFNTLISAYAKESYVEVAHQLFDEM----PQPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 334 MRQEYGLLPG 343
           MR+ +  + G
Sbjct: 131 MREAFLDMDG 140


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/574 (36%), Positives = 342/574 (59%), Gaps = 7/574 (1%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y+A + A    + L   +QVHAH++ A Y     + T+L+ L    G +  A+ +   +P
Sbjct: 44  YDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMP 103

Query: 68  SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC-AHLSILNLGR 126
             +   +  +I   S++    ++L  + RM+ +    + +T + V+ SC  H SI  +  
Sbjct: 104 ERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQV-E 162

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            VH  V  + ++S + V ++L++ Y KS N+  ARKVFD +P++  V+  ++ISGY Q G
Sbjct: 163 QVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLG 222

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
              EA+ LF  +   G+  +  T   +L + + L  ++ G+ VH  I+ + L   +VL  
Sbjct: 223 LDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQN 282

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           SLI+MY++CG +  +R +FD M + + I+W AM+ GYG HG G E V+LF  M    V+P
Sbjct: 283 SLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKP 341

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           ++VT +AVLS C+H GLV EG  +F  + +E   +  + H+ C++DL GR+G L +A   
Sbjct: 342 DSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDL 401

Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
           ++ +  E P PA+W ++LGAC++H N  +G  VA+ LL +EP N G+YV+LSNIYA AG 
Sbjct: 402 IEHMPFE-PTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGM 460

Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE 486
              V  VR +M++  + K    S + +D+  + F   ++ HP   +I   + E+    + 
Sbjct: 461 WKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKA 520

Query: 487 AGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSA 546
           AG+VP+    +H++++E++E  L  HSEKLA+ FGLM T PG+TI+++KNLR+CVDCH+ 
Sbjct: 521 AGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNF 580

Query: 547 IKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KF+S    REI +RD+ RFH  K G+C+C DYW
Sbjct: 581 AKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 166/314 (52%), Gaps = 9/314 (2%)

Query: 107 YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR 166
           + + A I +C     L  GR VH H+  + Y   +++   L+  Y +   +D AR V D 
Sbjct: 42  HDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDG 101

Query: 167 MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
           MP+++VV+W +MISGY Q+G   EA+ LF  M   G   +  T   VL +C     I   
Sbjct: 102 MPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQV 161

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
             VH  +V    + ++ + +SL++MY + GN+ +AR++FDM+ E + ++ TA+ISGY   
Sbjct: 162 EQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQL 221

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVE 345
           G   EA++LF ++ + G++ N VTF  +L++ +    +  G +V    +R+E      ++
Sbjct: 222 GLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQ 281

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           +   ++D++ + G L  + + V D + ++ A + W AML     H    +G EV +   +
Sbjct: 282 N--SLIDMYSKCGKLLYSRR-VFDNMPQRSAIS-WNAMLMGYGRH---GIGQEVVQLFRT 334

Query: 406 VEPE-NPGHYVMLS 418
           +  E  P    +L+
Sbjct: 335 MTEEVKPDSVTLLA 348


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/517 (41%), Positives = 301/517 (58%), Gaps = 14/517 (2%)

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK---SCAHLSILNLG 125
           P +F  N+++   S     +D+L F  R+       + +T + ++K   S AH       
Sbjct: 104 PSTFQCNSILRALSD---PSDALRFLCRVRALGRRGNAFTLAILLKPRCSLAH------A 154

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           R +H +V   G+  D  +  +L+  YA   + D ARK+FD MP +  VAWN +I+ Y +N
Sbjct: 155 RQLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARN 214

Query: 186 GFAKEAIGLFNLMR--DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
              K+A+ LF  MR  D    PD  TC+ +L AC+ LG +D G  V  +    G    + 
Sbjct: 215 RRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELK 274

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           +  SLI MY RCG V KA  +F    + +V+ WTAMISG   +G+G +A+ +F  M    
Sbjct: 275 VRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSD 334

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           V P+  TF  VLSAC+H+GLV EG R F  MR EYGL P V H+ C+VDL GRAGLL+EA
Sbjct: 335 VAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEA 394

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
           Y+FV + +   P   +W  +LGAC++H + DLG  V  +L+ ++ +  G YV+L N YA 
Sbjct: 395 YEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAA 454

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
            G   +V  +R +M ++G++   G +TVE +   + F   D +HP   EIY+ L E+  +
Sbjct: 455 VGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQ 514

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
            R AGYVP   S +H+L+ E +E +L YHSEKLA+AF L+ T     IR+ KNLR+CVDC
Sbjct: 515 LRIAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDC 574

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           H+  K  S    R +IVRDR RFHHF+ G CSC DYW
Sbjct: 575 HNFTKMFSAIYRRIVIVRDRTRFHHFQGGKCSCNDYW 611



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 135/280 (48%), Gaps = 5/280 (1%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           +LK    L   +Q+HA+++  G+ R   + T L+    + G    A+++F  +P  D+  
Sbjct: 144 LLKPRCSLAHARQLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVA 203

Query: 74  FNTLIIRNSKANFSTDSLLFYRRM--IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           +N LI   ++   + D+L  +  M    S   P + T   ++++C+ L  L+ G  V  +
Sbjct: 204 WNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAY 263

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
               GY  +L V+ +L+  Y +   VD A +VF   P KSVV W +MISG   NGF  +A
Sbjct: 264 AEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDA 323

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLIN 250
           I +F  M    V PD  T   VL+AC+  G +D G R+        GL  NV     +++
Sbjct: 324 ISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVD 383

Query: 251 MYARCGNVSKAREIF--DMMSELNVIAWTAMISGYGMHGY 288
           +  R G + +A E    +M    +   W  ++    +HG+
Sbjct: 384 LMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGH 423


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 237/636 (37%), Positives = 349/636 (54%), Gaps = 70/636 (11%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF---ITYAQRIFFCIPSP 69
           ++L +   L+ L Q+H   I  G   + S  T  L L C       + YA+R+  C P P
Sbjct: 10  SLLNSCKNLRALTQIHGLFIKYGVD-TDSYFTGKLILHCAISISDALPYARRLLLCFPEP 68

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAV 128
           D+F+FNTL+   S+++   +S+  +  M+    + P +++F+ VIK+  +   L  G  +
Sbjct: 69  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 128

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS----------- 177
           HC     G +S L V   L+  Y     V+ ARKVFD M   ++VAWN+           
Sbjct: 129 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDV 188

Query: 178 --------------------MISGYEQNGFAKEAIGLFNLM--RD--------------- 200
                               M++GY + G  + A  +F+ M  RD               
Sbjct: 189 AGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNG 248

Query: 201 --------------FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
                          G++P+  +   VL+AC+Q G  + G+ +H F+   G    V +  
Sbjct: 249 SFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNN 308

Query: 247 SLINMYARCGNVSKAREIFDMMSELN-VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           +LI+MY+RCGNV  AR +F+ M E   +++WT+MI+G  MHG G EAV LF+ M A+GV 
Sbjct: 309 ALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVT 368

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           P+ ++F+++L AC+HAGL++EG   F+ M++ Y + P +EH+ CMVDL+GR+G L +AY 
Sbjct: 369 PDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYD 428

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
           F+   +   P   VW  +LGAC  H N +L  +V + L  ++P N G  V+LSN YA AG
Sbjct: 429 FICQ-MPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAG 487

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
           +   V  +R  MI + +KK   +S VEV +  Y F+ G+K      E ++ L E++ R +
Sbjct: 488 KWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLK 547

Query: 486 -EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
            EAGY PE  SA++++EEEE+E  +  HSEKLALAF L R S G  IRIVKNLR+C DCH
Sbjct: 548 DEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCH 607

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           + +K  S     EI+VRDR RFH FK GSCSC DYW
Sbjct: 608 AVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 170/337 (50%), Gaps = 13/337 (3%)

Query: 5   QPHSPAYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP+  A+ A++ A   G  +   +++   ++V    R+ +    +L+    AG +  A+R
Sbjct: 169 QPNLVAWNAVITACFRGNDVAGAREIFDKMLV----RNHTSWNVMLAGYIKAGELESAKR 224

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF  +P  D   ++T+I+  +      +S L++R +  + +SP+  + + V+ +C+    
Sbjct: 225 IFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGS 284

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS-VVAWNSMIS 180
              G+ +H  V  +GY   + V  AL++ Y++  NV +AR VF+ M +K  +V+W SMI+
Sbjct: 285 FEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIA 344

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR-WVHEFIVGQGLD 239
           G   +G  +EA+ LFN M  +GV PD  + + +L AC+  G I+ G  +  E      ++
Sbjct: 345 GLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIE 404

Query: 240 VNVVLATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             +     ++++Y R G + KA + I  M      I W  ++     HG    A ++  +
Sbjct: 405 PEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQV--K 462

Query: 299 MRAHGVRPNNVTFVAVLS-ACAHAGLVQEGHRVFASM 334
            R + + PNN   + +LS A A AG  ++   +  SM
Sbjct: 463 QRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSM 499


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/517 (41%), Positives = 301/517 (58%), Gaps = 14/517 (2%)

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK---SCAHLSILNLG 125
           P +F  N+++   S     +D+L F  R+       + +T + ++K   S AH       
Sbjct: 90  PSTFQCNSILRALSD---PSDALRFLCRVRALGRRGNAFTLAILLKPRCSLAH------A 140

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           R +H +V   G+  D  +  +L+  YA   + D ARK+FD MP +  VAWN +I+ Y +N
Sbjct: 141 RQLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARN 200

Query: 186 GFAKEAIGLFNLMR--DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
              K+A+ LF  MR  D    PD  TC+ +L AC+ LG +D G  V  +    G    + 
Sbjct: 201 RRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELK 260

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           +  SLI MY RCG V KA  +F    + +V+ WTAMISG   +G+G +A+ +F  M    
Sbjct: 261 VRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSD 320

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           V P+  TF  VLSAC+H+GLV EG R F  MR EYGL P V H+ C+VDL GRAGLL+EA
Sbjct: 321 VAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEA 380

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
           Y+FV + +   P   +W  +LGAC++H + DLG  V  +L+ ++ +  G YV+L N YA 
Sbjct: 381 YEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAA 440

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
            G   +V  +R +M ++G++   G +TVE +   + F   D +HP   EIY+ L E+  +
Sbjct: 441 VGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQ 500

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
            R AGYVP   S +H+L+ E +E +L YHSEKLA+AF L+ T     IR+ KNLR+CVDC
Sbjct: 501 LRIAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDC 560

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           H+  K  S    R +IVRDR RFHHF+ G CSC DYW
Sbjct: 561 HNFTKMFSAIYRRIVIVRDRTRFHHFQGGKCSCNDYW 597



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 135/280 (48%), Gaps = 5/280 (1%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           +LK    L   +Q+HA+++  G+ R   + T L+    + G    A+++F  +P  D+  
Sbjct: 130 LLKPRCSLAHARQLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVA 189

Query: 74  FNTLIIRNSKANFSTDSLLFYRRM--IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
           +N LI   ++   + D+L  +  M    S   P + T   ++++C+ L  L+ G  V  +
Sbjct: 190 WNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAY 249

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
               GY  +L V+ +L+  Y +   VD A +VF   P KSVV W +MISG   NGF  +A
Sbjct: 250 AEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDA 309

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLIN 250
           I +F  M    V PD  T   VL+AC+  G +D G R+        GL  NV     +++
Sbjct: 310 ISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVD 369

Query: 251 MYARCGNVSKAREIF--DMMSELNVIAWTAMISGYGMHGY 288
           +  R G + +A E    +M    +   W  ++    +HG+
Sbjct: 370 LMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGH 409


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/523 (40%), Positives = 315/523 (60%), Gaps = 22/523 (4%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N +I   +K N   ++L  Y ++   +    N+   +V+K+C  +S   LG+ +H  V 
Sbjct: 127 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 186

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW----NSMISGYEQNGFAK 189
             G D D+ V  AL+  Y +   V+ AR VFD+M ++ VV+W     +++  Y + G   
Sbjct: 187 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLG 246

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-----RWVHEFIV--------GQ 236
            A  LFN +    V     +   ++A C +   ++ G     R   E I          +
Sbjct: 247 LARQLFNGLTQKTV----VSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLNKE 302

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
            ++V+ +L T+L++MYA+CG+++ A  +F      ++  W A+I+G+ MHGYG EA+++F
Sbjct: 303 RVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIF 362

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
             M   GV+PN++TF+ +L AC+HAGLV EG ++F  M   +GL+P +EH+ CMVDL GR
Sbjct: 363 AEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGR 422

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
           AGLL+EA++ +K  +  KP   VW A++ AC++HKN  LG   A  LL +EPEN G+ V+
Sbjct: 423 AGLLDEAHEMIKS-MPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVL 481

Query: 417 LSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQY 476
           +SNIYA A R      VR  M   G+KK  G+S +EV+   + F MGD+SHP    I + 
Sbjct: 482 MSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEM 541

Query: 477 LDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKN 536
           L E+  +  EAGYVP++ + +  ++EEE+E +L YHSEKLA+AFGL+ T+P   IRIVKN
Sbjct: 542 LAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKN 601

Query: 537 LRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           LR+C DCH+A K +S    R IIVRDR RFHHF+ G CSC DY
Sbjct: 602 LRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/545 (38%), Positives = 325/545 (59%), Gaps = 22/545 (4%)

Query: 43  LTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTD--SLLFYRRM 97
           +T ++   C+ G +  A+ +F  +P  +   +  ++    RN K + +     ++  R  
Sbjct: 182 VTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNE 241

Query: 98  IVSNISPSNYTFSAVIKSCAHL-SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           +        YT S  ++  + L   + +   V C+  + G+                +  
Sbjct: 242 VSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGF--------------GLNGE 287

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           VD AR+VF  M ++    W++MI  YE+ G+  EA+GLF  M+  G+  +  + + VL+ 
Sbjct: 288 VDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSV 347

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C  L  +D G+ VH  +V    D ++ +A+ LI MY +CGN+ +A+++F+     +V+ W
Sbjct: 348 CVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMW 407

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
            +MI+GY  HG G EA+ +FH M + GV P++VTF+ VLSAC+++G V+EG  +F +M+ 
Sbjct: 408 NSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKC 467

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
           +Y + PG+EH+ C+VDL GRA  +NEA K V+ +  E P   VW A+LGAC+ H   DL 
Sbjct: 468 KYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPME-PDAIVWGALLGACRTHMKLDLA 526

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQK 456
               E L  +EP+N G YV+LSN+YA  GR   VEV+R  +  + + K  G S +EV++K
Sbjct: 527 EVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKK 586

Query: 457 NYLFSMGD-KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEK 515
            ++F+ GD K HP    I + L++L G  REAGY P+    +H+++EEE+ +SL YHSEK
Sbjct: 587 VHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEK 646

Query: 516 LALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCS 575
           LA+A+GL++   GM IR++KNLR+C DCHSAIK I+  T REII+RD  RFHHFK G CS
Sbjct: 647 LAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGHCS 706

Query: 576 CLDYW 580
           C DYW
Sbjct: 707 CKDYW 711



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 123/241 (51%), Gaps = 23/241 (9%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
            L++ + K+  +  AR+VFD MPD++VV+W SM+ GY +NG   EA  LF  M    V  
Sbjct: 91  GLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV-- 148

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
              +   +L    Q G +D  R + + +     + +VV  T++I  Y   G + +AR +F
Sbjct: 149 --VSWTVMLGGLLQEGRVDDARKLFDMMP----EKDVVAVTNMIGGYCEEGRLDEARALF 202

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D M + NV+ WTAM+SGY  +G    A +LF  M       N V++ A+L    H+G ++
Sbjct: 203 DEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPER----NEVSWTAMLLGYTHSGRMR 258

Query: 326 EGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           E   +F +M       P     VC  M+  FG  G +++A +  K +  ++     W+AM
Sbjct: 259 EASSLFDAM-------PVKPVVVCNEMIMGFGLNGEVDKARRVFKGM--KERDNGTWSAM 309

Query: 384 L 384
           +
Sbjct: 310 I 310



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 177/389 (45%), Gaps = 34/389 (8%)

Query: 54  GFITYAQRIFFCIPSPDSFL--FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA 111
           G + +A+++F   P P   +  +N ++    +A    ++LL + +M   N    N   S 
Sbjct: 36  GQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISG 95

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
            IK+     +L+  R     VF +  D ++    ++V  Y ++ +V  A ++F  MP K+
Sbjct: 96  HIKN----GMLSEAR----RVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKN 147

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           VV+W  M+ G  Q G   +A  LF++M +     D      ++    + G +D  R + +
Sbjct: 148 VVSWTVMLGGLLQEGRVDDARKLFDMMPE----KDVVAVTNMIGGYCEEGRLDEARALFD 203

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
            +  +    NVV  T++++ YAR G V  AR++F++M E N ++WTAM+ GY   G   E
Sbjct: 204 EMPKR----NVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMRE 259

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ-EYGLLPGVEHHVCM 350
           A  LF  M    V    V    ++      G V +  RVF  M++ + G          M
Sbjct: 260 ASSLFDAMPVKPV----VVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSA------M 309

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPA---PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
           + ++ R G   EA    + +  E  A   P++  ++L  C    + D G +V   L+  E
Sbjct: 310 IKVYERKGYELEALGLFRRMQREGLALNFPSL-ISVLSVCVSLASLDHGKQVHAQLVRSE 368

Query: 408 PENPGHYV-MLSNIYALAGRMDRVEVVRN 435
            +   +   +L  +Y   G + R + V N
Sbjct: 369 FDQDLYVASVLITMYVKCGNLVRAKQVFN 397



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 106/259 (40%), Gaps = 47/259 (18%)

Query: 249 INMYARCGNVSKAREIFDM--MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           I  YAR G +  AR++FD   +    V +W AM++ Y       EA+ LF +M       
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQR---- 84

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           N V++  ++S     G++ E  RVF +M         V     MV  + R G + EA + 
Sbjct: 85  NTVSWNGLISGHIKNGMLSEARRVFDTMPDR-----NVVSWTSMVRGYVRNGDVAEAERL 139

Query: 367 V-----KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI- 420
                 K+V+        WT MLG        D     A  L  + PE     V ++N+ 
Sbjct: 140 FWHMPHKNVVS-------WTVMLGGLLQEGRVD----DARKLFDMMPEK--DVVAVTNMI 186

Query: 421 --YALAGRMDRVEVVRNIMIQKGLKKHV----GYS-TVEVDQKNYLFSMGDKSHPNTNEI 473
             Y   GR+D    + + M ++ +        GY+   +VD    LF +     P  NE+
Sbjct: 187 GGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEV----MPERNEV 242

Query: 474 YQYLDELM-----GRCREA 487
             +   L+     GR REA
Sbjct: 243 -SWTAMLLGYTHSGRMREA 260


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 237/636 (37%), Positives = 349/636 (54%), Gaps = 70/636 (11%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF---ITYAQRIFFCIPSP 69
           ++L +   L+ L Q+H   I  G   + S  T  L L C       + YA+R+  C P P
Sbjct: 2   SLLNSCKNLRALTQIHGLFIKYGVD-TDSYFTGKLILHCAISISDALPYARRLLLCFPEP 60

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAV 128
           D+F+FNTL+   S+++   +S+  +  M+    + P +++F+ VIK+  +   L  G  +
Sbjct: 61  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 120

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS----------- 177
           HC     G +S L V   L+  Y     V+ ARKVFD M   ++VAWN+           
Sbjct: 121 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDV 180

Query: 178 --------------------MISGYEQNGFAKEAIGLFNLM--RD--------------- 200
                               M++GY + G  + A  +F+ M  RD               
Sbjct: 181 AGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNG 240

Query: 201 --------------FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
                          G++P+  +   VL+AC+Q G  + G+ +H F+   G    V +  
Sbjct: 241 SFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNN 300

Query: 247 SLINMYARCGNVSKAREIFDMMSELN-VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           +LI+MY+RCGNV  AR +F+ M E   +++WT+MI+G  MHG G EAV LF+ M A+GV 
Sbjct: 301 ALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVT 360

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           P+ ++F+++L AC+HAGL++EG   F+ M++ Y + P +EH+ CMVDL+GR+G L +AY 
Sbjct: 361 PDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYD 420

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
           F+   +   P   VW  +LGAC  H N +L  +V + L  ++P N G  V+LSN YA AG
Sbjct: 421 FICQ-MPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAG 479

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
           +   V  +R  MI + +KK   +S VEV +  Y F+ G+K      E ++ L E++ R +
Sbjct: 480 KWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLK 539

Query: 486 -EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
            EAGY PE  SA++++EEEE+E  +  HSEKLALAF L R S G  IRIVKNLR+C DCH
Sbjct: 540 DEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCH 599

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           + +K  S     EI+VRDR RFH FK GSCSC DYW
Sbjct: 600 AVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 635



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 170/337 (50%), Gaps = 13/337 (3%)

Query: 5   QPHSPAYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP+  A+ A++ A   G  +   +++   ++V    R+ +    +L+    AG +  A+R
Sbjct: 161 QPNLVAWNAVITACFRGNDVAGAREIFDKMLV----RNHTSWNVMLAGYIKAGELESAKR 216

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF  +P  D   ++T+I+  +      +S L++R +  + +SP+  + + V+ +C+    
Sbjct: 217 IFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGS 276

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS-VVAWNSMIS 180
              G+ +H  V  +GY   + V  AL++ Y++  NV +AR VF+ M +K  +V+W SMI+
Sbjct: 277 FEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIA 336

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR-WVHEFIVGQGLD 239
           G   +G  +EA+ LFN M  +GV PD  + + +L AC+  G I+ G  +  E      ++
Sbjct: 337 GLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIE 396

Query: 240 VNVVLATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             +     ++++Y R G + KA + I  M      I W  ++     HG    A ++  +
Sbjct: 397 PEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQV--K 454

Query: 299 MRAHGVRPNNVTFVAVLS-ACAHAGLVQEGHRVFASM 334
            R + + PNN   + +LS A A AG  ++   +  SM
Sbjct: 455 QRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSM 491


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/554 (38%), Positives = 329/554 (59%), Gaps = 2/554 (0%)

Query: 28  HAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFS 87
           H++++  G G    +LT L+ +  + G    A  +F  + S     +N +I    +    
Sbjct: 269 HSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMI 328

Query: 88  TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL 147
            +S   +RR++ S     + T  ++I+ C+  S L  GR +H  +     +S L +  A+
Sbjct: 329 PESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAI 388

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
           V+ Y+K   +  A  VF RM  K+V+ W +M+ G  QNG+A++A+ LF  M++  V  +S
Sbjct: 389 VDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANS 448

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
            T V ++  CA LG +  GR VH   +  G   + V+ ++LI+MYA+CG +  A ++F+ 
Sbjct: 449 VTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNN 508

Query: 268 MSEL-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
              L +VI   +MI GYGMHG+G  A+ ++ RM    ++PN  TFV++L+AC+H+GLV+E
Sbjct: 509 EFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEE 568

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G  +F SM +++ + P  +H+ C+VDL  RAG L EA + VK  +  +P+  V  A+L  
Sbjct: 569 GKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQ-MPFQPSTDVLEALLSG 627

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C+ HKN ++G+++A+ L+S++  N G YVMLSNIYA A + + V  +R +M  +G+KK  
Sbjct: 628 CRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIP 687

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
           GYS +EV  K Y F   D SHP+  +IYQ L+ L       GY+P++   + ++ E  + 
Sbjct: 688 GYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMKV 747

Query: 507 YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
             L  HSE+LA+AFGL+ T  G  I+I KNLR+CVDCH+  K+IS    REIIVRD  RF
Sbjct: 748 KLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDANRF 807

Query: 567 HHFKRGSCSCLDYW 580
           HHF  G CSC D+W
Sbjct: 808 HHFVNGKCSCNDFW 821



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 235/477 (49%), Gaps = 54/477 (11%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           + +++ +   G++  AQ++F  +P  D   +N++I    +     +S+  +  MI   + 
Sbjct: 184 SSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLR 243

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           PS  T + ++K+C    +  +G   H +V   G  +D+ V  +LV+ Y+   +   A  V
Sbjct: 244 PSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALV 303

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           FD M  +S+++WN+MISGY QNG   E+  LF  +   G   DS T V ++  C+Q  D+
Sbjct: 304 FDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDL 363

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
           + GR +H  I+ + L+ ++VL+T++++MY++CG + +A  +F  M + NVI WTAM+ G 
Sbjct: 364 ENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGL 423

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLP 342
             +GY  +A++LF +M+   V  N+VT V+++  CAH G + +G  V A  +R  Y    
Sbjct: 424 SQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDA 483

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKF------VKDVI--------------GE--------- 373
            +     ++D++ + G ++ A K       +KDVI              G          
Sbjct: 484 VITS--ALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRM 541

Query: 374 -----KPAPAVWTAMLGACKMHKNFDLGVEV---AEHLLSVEPENPGHYVMLSNIYALAG 425
                KP    + ++L AC      + G  +    E    V P++  HY  L ++++ AG
Sbjct: 542 IEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHK-HYACLVDLHSRAG 600

Query: 426 RMDRV-EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           R++   E+V+ +  Q              D    L S G ++H NTN   Q  D L+
Sbjct: 601 RLEEADELVKQMPFQP-----------STDVLEALLS-GCRTHKNTNMGIQIADRLI 645



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 186/367 (50%), Gaps = 15/367 (4%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           ++ +HA +I         +  KL+ +  D GF+ +A+ +F     P++ + N +I    +
Sbjct: 63  VKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLR 122

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
                +    +R M   +I  ++YT    +K+C  L    +G  +       G+   L+V
Sbjct: 123 NQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYV 182

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
            +++VNF  K   +  A+KVFD MP+K VV WNS+I GY Q G   E+I +F  M   G+
Sbjct: 183 GSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGL 242

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
            P   T   +L AC Q G   +G   H +++  G+  +V + TSL++MY+  G+   A  
Sbjct: 243 RPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAAL 302

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +FD M   ++I+W AMISGY  +G   E+  LF R+   G   ++ T V+++  C+    
Sbjct: 303 VFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSD 362

Query: 324 VQEGHRVFAS--MRQEYGLLPGVEHHVCM----VDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           ++ G R+  S  +R+E      +E H+ +    VD++ + G + +A   V   +G+K   
Sbjct: 363 LENG-RILHSCIIRKE------LESHLVLSTAIVDMYSKCGAIKQA-TIVFGRMGKKNV- 413

Query: 378 AVWTAML 384
             WTAML
Sbjct: 414 ITWTAML 420



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 13/165 (7%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF---FCIPSPDSFLFNTLIIRN 81
           + VHAH I  GY     + + L+ +    G I  A+++F   F +   D  L N++I+  
Sbjct: 468 RTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHL--KDVILCNSMIMGY 525

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
                   +L  Y RMI   + P+  TF +++ +C+H  ++  G+A+         D D+
Sbjct: 526 GMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKAL---FHSMERDHDV 582

Query: 142 HVQ----AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMISG 181
             Q    A LV+ ++++  ++ A ++  +MP   S     +++SG
Sbjct: 583 RPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSG 627


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/544 (39%), Positives = 325/544 (59%), Gaps = 22/544 (4%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTD--SLLFYRRMI 98
           T ++S  C  G +  A+ +F  +P  +   + T+I   ++N + + +     ++  +  +
Sbjct: 175 TNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEV 234

Query: 99  VSNISPSNYTFSAVIKSCAHL-SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
                   YT    I+  + L   + +   V C+  + G+               ++  V
Sbjct: 235 SWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGF--------------GQNGEV 280

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
             AR+VFD++ +K    W++MI  YE+ GF  EA+ LF LM+  GV  +  + + VL+ C
Sbjct: 281 AKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVC 340

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
           A L  +D GR VH  +V    D +V +A+ LI MY +CG++ KAR+IFD  S  +++ W 
Sbjct: 341 ASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWN 400

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           ++I+GY  HG   EA+++FH M + G+  + VTFV VLSAC++ G V+EG  +F SM+ +
Sbjct: 401 SIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSK 460

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
           Y + P  EH+ CMVDL GRAGL+N+A   ++ +  E  A  +W A+LGAC+ H N +L  
Sbjct: 461 YLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADA-IIWGALLGACRTHMNMNLAE 519

Query: 398 EVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKN 457
             A+ LL +EP+N G Y++LSNIYA  GR   V  +R  M  K + K  G S +EV+++ 
Sbjct: 520 VAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRV 579

Query: 458 YLFSMG-DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKL 516
           ++F+ G    HP  + I + L++L G  REAGY P+S   +H+++EEE+  SL +HSE+L
Sbjct: 580 HMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERL 639

Query: 517 ALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSC 576
           A+AFGL++   GM IR++KNLR+C DCHSAIK I+  T REII+RD  RFHHFK G CSC
Sbjct: 640 AVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSC 699

Query: 577 LDYW 580
            DYW
Sbjct: 700 RDYW 703



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 19/239 (7%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
            L++ Y K+  V  ARK FD MP+++VV+W +M+ GY Q G   EA  LF  M +  V  
Sbjct: 83  GLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNV-- 140

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
              +   +L    Q+  ID  R + + +  +    +VV  T++I+ Y + G +++ARE+F
Sbjct: 141 --VSWTVMLGGLIQVRRIDEARGLFDIMPVK----DVVARTNMISGYCQEGRLAEARELF 194

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D M   NVI+WT MISGY  +G    A +LF  M       N V++ A+L      G ++
Sbjct: 195 DEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMP----EKNEVSWTAMLMGYTQGGRIE 250

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           E   +F +M      +  V     M+  FG+ G + +A + V D I EK     W+AM+
Sbjct: 251 EASELFDAMP-----VKAVVACNAMILGFGQNGEVAKARQ-VFDQIREKD-DGTWSAMI 302



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 104/196 (53%), Gaps = 10/196 (5%)

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D+  +  +++ Y +   +  AR++FD MP ++V++W +MISGY QNG    A  LF +M 
Sbjct: 170 DVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMP 229

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA-TSLINMYARCGNV 258
           +     +  +   +L    Q G I+    + +      + V  V+A  ++I  + + G V
Sbjct: 230 E----KNEVSWTAMLMGYTQGGRIEEASELFD-----AMPVKAVVACNAMILGFGQNGEV 280

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
           +KAR++FD + E +   W+AMI  Y   G+  EA+ LF  M+  GV+ N  + ++VLS C
Sbjct: 281 AKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVC 340

Query: 319 AHAGLVQEGHRVFASM 334
           A    +  G +V A +
Sbjct: 341 ASLASLDHGRQVHAEL 356



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 125/295 (42%), Gaps = 59/295 (20%)

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
           YA+   ++ AR+VFD MPDK +V+WNSM++GY QN   +EA  LF+ M      P+    
Sbjct: 26  YARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM------PER--- 76

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
                                         N V    LI+ Y +   VS+AR+ FD M E
Sbjct: 77  ------------------------------NTVSWNGLISGYVKNRMVSEARKAFDTMPE 106

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            NV++WTAM+ GY   G  +EA  LF +M    V    V++  +L        + E   +
Sbjct: 107 RNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNV----VSWTVMLGGLIQVRRIDEARGL 162

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGACK 388
           F  M      +  V     M+  + + G L EA    +++  E P   V  WT M+    
Sbjct: 163 FDIMP-----VKDVVARTNMISGYCQEGRLAEA----RELFDEMPRRNVISWTTMISGYV 213

Query: 389 MHKNFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
            +   D    VA  L  V PE N   +  +   Y   GR++    + + M  K +
Sbjct: 214 QNGQVD----VARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAV 264



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 35/181 (19%), Positives = 82/181 (45%), Gaps = 7/181 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           Q + P+  ++L     L  L   +QVHA L+ + +     + + L+++    G +  A++
Sbjct: 327 QSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQ 386

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           IF      D  ++N++I   ++     ++L  +  M  S ++    TF  V+ +C++   
Sbjct: 387 IFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGK 446

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQ--AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSM 178
           +  G  +      S Y  +   +  A +V+   ++  V+ A  +  +MP +   + W ++
Sbjct: 447 VKEGLEIF-ESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGAL 505

Query: 179 I 179
           +
Sbjct: 506 L 506


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/574 (38%), Positives = 327/574 (56%), Gaps = 66/574 (11%)

Query: 69  PDSFLFNTLIIRNSKAN-FSTDSLLFYRRMIVSNI-SPSNYTFSAVIKSCAHLSILNLGR 126
           P+ F +N L+   S+ N + T    F  ++++ N  +P  YTF++V+K+CA L+ +  G+
Sbjct: 88  PNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQ 147

Query: 127 AVHCHV---------------------------------------------FVSGY---- 137
            VHC V                                              +SGY    
Sbjct: 148 KVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSG 207

Query: 138 -------------DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
                        + +L   + +++ YA+  N++ AR++F+ MP ++VV+WN+MI+GY Q
Sbjct: 208 MVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQ 267

Query: 185 NGFAKEAIGLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           N    +AI LF  M+ + G+ P+  T V VL+ACA LG +DLG+W+H FI    ++V + 
Sbjct: 268 NEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLF 327

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           L  +L +MYA+CG V +A+ +F  M E +VI+W+ +I G  M+GY  EA   F  M   G
Sbjct: 328 LGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDG 387

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           + PN+++F+ +L+AC HAGLV +G   F  M Q YG+ P +EH+ C+VDL  RAG L++A
Sbjct: 388 LEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQA 447

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
              + + +  +P   VW A+LG C+++K+ + G  V   +L ++  + G  V L+N+YA 
Sbjct: 448 ESLI-NSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYAS 506

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
            GR+D     R  M      K  G S +E++   Y F MGD SHP +  IY  + EL  +
Sbjct: 507 MGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWK 566

Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
            + AGY P+++  +H ++EEE+E +L  HSEKLALAFGL+ TS G TIRIVKNLR+C DC
Sbjct: 567 MKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDC 626

Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCL 577
           H AIK IS    REI+VRDR RFHHFK G CS L
Sbjct: 627 HDAIKIISKIVEREIVVRDRSRFHHFKDGKCSWL 660


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/441 (43%), Positives = 286/441 (64%), Gaps = 1/441 (0%)

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           DL     +++ YA    V +AR++FD   D+   +W+SMIS Y ++  +KEA+ L+  M 
Sbjct: 53  DLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMH 112

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
              + PD  T V V++AC+ LG + +G  VH F+    +++++ L T+LI+MYA+CG++ 
Sbjct: 113 AASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIE 172

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            A+ +FD M E +V  W++MI G   HG G E++ LF +M + G++PN VTFV VL AC 
Sbjct: 173 SAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACT 232

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H GLV EG + F SM + +G+ P VEH+ CMVDL GR+G + EA + ++ +  E P   +
Sbjct: 233 HVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFE-PDTII 291

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W A+LGAC++HKN ++  E    L  ++P   GHYV+LSNIYA A   + V  +R  + +
Sbjct: 292 WRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRR 351

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
             +++  G S++E D+K + F  GD+ HP + EIY+ L+E+M R ++AGY P +   + +
Sbjct: 352 DNIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQD 411

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           ++E+ +E SL  HSEKLA+AF L+ T    TIRI KNLR C DCHSA+K IS+  +R++I
Sbjct: 412 IDEQSKERSLAEHSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLI 471

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           VRDR RFHHF  G CSC DYW
Sbjct: 472 VRDRNRFHHFSEGQCSCKDYW 492



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 133/249 (53%), Gaps = 2/249 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+ IF      D+F ++++I   +K+  S ++L  +R M  ++I P   T  +V+
Sbjct: 68  GEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVV 127

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
            +C+ L  L +G  VH  V  +  + DL +  AL++ YAK  +++ A++VFDRMP+K V 
Sbjct: 128 SACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQ 187

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEF 232
            W+SMI G   +G   E++ LF+ M   G+ P+  T V VL AC  +G +  G ++    
Sbjct: 188 TWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSM 247

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTE 291
               G++  V     ++++  R G+V +AR++   M+ E + I W A++    +H     
Sbjct: 248 NEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEI 307

Query: 292 AVELFHRMR 300
           A E   ++R
Sbjct: 308 AEEAMAKLR 316



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 78/164 (47%), Gaps = 5/164 (3%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L+ +    G I  AQR+F  +P  D   ++++II  +      +SL  + +MI   + 
Sbjct: 159 TALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMK 218

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHV-FVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
           P+  TF  V+ +C H+ +++ G+     +  V G +  +     +V+   +S +V+ AR+
Sbjct: 219 PNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQ 278

Query: 163 VFDRMP-DKSVVAWNSMISG---YEQNGFAKEAIGLFNLMRDFG 202
           +   M  +   + W +++     ++    A+EA+    ++   G
Sbjct: 279 LIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLG 322


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/560 (37%), Positives = 320/560 (57%), Gaps = 1/560 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+ L ++H  +   G   + +M   L+++         A+ +F  +  P+   +N++I  
Sbjct: 378 LEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGI 437

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
             +     D+L  +R M    I P    F  ++ +C   S     + VH  V  SG    
Sbjct: 438 YVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGS 497

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
             VQ +LVN YAK+  +DVA  +   M ++ + AWN +I+GY  +G ++EA+  +  ++ 
Sbjct: 498 PLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQL 557

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
             +  D  T + VL AC     +  G+ +H   V  GLD +V++  +L NMY++CG++  
Sbjct: 558 EAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMEN 617

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           AR IFD M   + ++W  M+  Y  HG   E ++L  +M   GV+ N +TFV+VLS+C+H
Sbjct: 618 ARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSH 677

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
           AGL+ EG + F S+  + G+    EH+ C+VDL GRAG L EA K++  +  E P    W
Sbjct: 678 AGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLE-PGIVTW 736

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
            ++LGAC++ K+ D G   A  LL ++P N    V+LSNIY+  G       +R  M  +
Sbjct: 737 ASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASR 796

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
            +KK  G S+++V  K + F + D SHP   EIY  ++EL    REAGYVP+++  +H++
Sbjct: 797 RVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDV 856

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
           +EE++E  L YHSEKLA+AFGL+ T    ++ I KNLR+C DCH+A KFIS  T REI+V
Sbjct: 857 DEEQKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGREIVV 916

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RD  RFHHF+ GSCSC DYW
Sbjct: 917 RDNHRFHHFRDGSCSCKDYW 936



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 196/394 (49%), Gaps = 10/394 (2%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P++    A+L +    + L+    VHA  +  G+ ++  + T LL++    G +  AQ +
Sbjct: 56  PNAITLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSV 115

Query: 63  FFCIPSPDSFLFNTLI-IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           F  +   +   +N ++ + + +      ++  + RM++  +  +  TF  V+ S      
Sbjct: 116 FEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDA 175

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +H  V  S +  D+ V  ALVN Y K  ++  ARKVFD MP +SV  WNSMIS 
Sbjct: 176 LRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISA 235

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y  +  + EA  +F  M+  G   D  T + +L AC     +  G+ V E I     +++
Sbjct: 236 YSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELD 295

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + + T+LI MYARC +   A ++F  M + N+I W+A+I+ +  HG+  EA+  F  M+ 
Sbjct: 296 LFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQ 355

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ PN VTF+++L+       ++E  R+   +  E+GL         +V+++GR    +
Sbjct: 356 EGILPNRVTFISLLNGFTTPSGLEELSRIHL-LITEHGLDDTTTMRNALVNVYGRCESPD 414

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLG---ACKMHKN 392
           +A      +  E P    W +M+G    C+ H +
Sbjct: 415 DARTVFDQL--ELPNLISWNSMIGIYVQCERHDD 446



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 164/332 (49%), Gaps = 3/332 (0%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A ++F  +   +   ++ +I   +      ++L ++R M    I P+  TF +++     
Sbjct: 315 AAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTT 374

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
            S L     +H  +   G D    ++ ALVN Y +  + D AR VFD++   ++++WNSM
Sbjct: 375 PSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSM 434

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           I  Y Q     +A+ LF  M+  G+ PD    + +L AC         + VH+ +   GL
Sbjct: 435 IGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGL 494

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             + ++ TSL+NMYA+ G +  A  I   M E  + AW  +I+GY +HG   EA+E + +
Sbjct: 495 GGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQK 554

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           ++   +  + VTF++VL+AC  +  + EG ++  S   E GL   V     + +++ + G
Sbjct: 555 LQLEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKNALTNMYSKCG 613

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            +  A + + D +  + A + W  ML A   H
Sbjct: 614 SMENARR-IFDSMPIRSAVS-WNGMLQAYAQH 643



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 135/264 (51%), Gaps = 1/264 (0%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N +I   S      ++L  +  M++  ++P+  T  AV+ SC     L  G  VH    
Sbjct: 26  WNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSCGSFRELRDGILVHALSL 85

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA-KEAI 192
             G+  +  V  AL+N Y K   +  A+ VF+ M +K+VV WN+M+  Y   G   K A+
Sbjct: 86  ERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAV 145

Query: 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252
            LF  M   GV  +  T + VL +      +  G+++H  +      ++V + T+L+N Y
Sbjct: 146 ELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTY 205

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
            +CG+++ AR++FD M   +V  W +MIS Y +     EA  +F RM+  G R + VTF+
Sbjct: 206 TKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFL 265

Query: 313 AVLSACAHAGLVQEGHRVFASMRQ 336
           ++L AC +   +Q G  V  S+ +
Sbjct: 266 SILDACVNPETLQHGKHVRESISE 289



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 133/241 (55%), Gaps = 10/241 (4%)

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            Y++  ++  A   F ++  ++VV+WN MIS Y      +EA+ LF+ M   GV P++ T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
            V VL +C    ++  G  VH   + +G   N ++AT+L+NMY +CG +  A+ +F+ M+
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 270 ELNVIAWTAMISGYGMHGYGTE-AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
           E NV+ W AM+  Y + G   + AVELF RM   GV+ N +TF+ VL++      +++G 
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 329 RVFASMRQ-EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLG 385
            + + +R+ E+ L   V  +  +V+ + + G L +A K    V    P  +V  W +M+ 
Sbjct: 181 FIHSCVRESEHSL--DVFVNTALVNTYTKCGSLTDARK----VFDGMPCRSVGTWNSMIS 234

Query: 386 A 386
           A
Sbjct: 235 A 235


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/596 (36%), Positives = 329/596 (55%), Gaps = 37/596 (6%)

Query: 21  LKPLQQVHAHLIVAGY---GRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTL 77
           +  ++Q HA ++V G    GR  S L   L++   +    YA  I+  I  P  F  N +
Sbjct: 44  ITQIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNM 103

Query: 78  IIRNSKANFSTDSLLFYRRMIVSNIS-PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
           I    K +    S+  Y  M  S ++ P+ +T + V+++C++   +  G  V  HV   G
Sbjct: 104 IRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLG 163

Query: 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDR------------------------------ 166
           +  D+ V+ AL++ Y     V+ A++VFD                               
Sbjct: 164 FVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLF 223

Query: 167 --MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
             MP+K V++W ++ISG  QNG  ++A+  F  + +  + P+    V +LAA AQLG ++
Sbjct: 224 VEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLE 283

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
            G+ +H         +   L T+L++MYA+CG + ++R +FD M E +  +W  MI G  
Sbjct: 284 YGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLA 343

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
            HG G EA+ LF +    G  P NVTF+ VL+AC+ AGLV EG   F  M   YG+ P +
Sbjct: 344 THGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEM 403

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           EH+ CMVDL  RAG + +A + + + +   P P +W ++LG+C++H   +LG E+   L+
Sbjct: 404 EHYGCMVDLLSRAGFVYDAVEMI-NRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLI 462

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
            ++P + GHYV L+ I+A   + + V  VR +M ++   K  G+S +E + + + F  GD
Sbjct: 463 QMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGD 522

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
           K H  T EIY+ L+ +  R   AGY     S +H++EEEE+E +++ HSE+LA+AFGL+ 
Sbjct: 523 KEHERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLV 582

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           T  G  IRI+KNLR+C DCH   K IS+   REIIVRD  RFHHFK+G CSC DYW
Sbjct: 583 TKDGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/585 (36%), Positives = 338/585 (57%), Gaps = 32/585 (5%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +HA +   G+  +  + T L+      G +  A+ +F  I   D   +  ++   ++ + 
Sbjct: 161 IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDC 220

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             ++L  + +M +    P+N+TF++V K+C  L   ++G++VH     S Y+ DL+V  A
Sbjct: 221 FKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVA 280

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ Y KS ++D AR+ F+ +P K V+ W+ MI+ Y Q+  +KEA+ +F  MR   V P+
Sbjct: 281 LLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPN 340

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T   VL ACA +  ++LG  +H  ++  GL  +V ++ +L+++YA+CG +  + E+F 
Sbjct: 341 QFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFA 400

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH------------------------ 302
                N + W  +I G+   G G +A+ LF  M  +                        
Sbjct: 401 ESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEP 460

Query: 303 -------GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355
                   V+P+ +TFV VLSACA+AGL+ +G   F SM Q++G+ P +EH+ CMV L G
Sbjct: 461 GLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLG 520

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415
           R G L++A K + D I  +P+  VW A+LGAC +H + +LG   A+ +L +EP++   +V
Sbjct: 521 RGGHLDKAVKLI-DEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHV 579

Query: 416 MLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQ 475
           +LSN+YA A R D V  VR  M +KG+KK  G S +E     + F++GD SHP    I  
Sbjct: 580 LLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVING 639

Query: 476 YLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVK 535
            L+ L  + ++AGY+P     + ++E+EE+E  L  HSE+LAL+FG++RT  G  IRI+K
Sbjct: 640 MLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMK 699

Query: 536 NLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           NLR+CVDCH+AIK IS    REI+VRD  RFHHF+ G CSC DYW
Sbjct: 700 NLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 205/427 (48%), Gaps = 37/427 (8%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LL++   + F+  A ++F  +P  ++  F TLI   +++    +++  + R+       +
Sbjct: 79  LLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELN 138

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            + F+ ++K         LG  +H  +F  G++S+  V  AL++ Y+    VDVAR+VFD
Sbjct: 139 PFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFD 198

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            +  K +V+W  M++ + +N   KEA+ LF+ MR  G  P++ T   V  AC  L   D+
Sbjct: 199 GILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDV 258

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ VH   +    ++++ +  +L+++Y + G++  AR  F+ + + +VI W+ MI+ Y  
Sbjct: 259 GKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQ 318

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
                EAVE+F +MR   V PN  TF +VL ACA    +  G+++   + +  GL   V 
Sbjct: 319 SDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK-IGLHSDVF 377

Query: 346 HHVCMVDLFGRAGLLNEAYKFV------KDVI-------------GEK------------ 374
               ++D++ + G +  + +         DV              GEK            
Sbjct: 378 VSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYR 437

Query: 375 --PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432
                  +++ L AC      + G+++  H L+V+P+      +LS   A AG +D+ + 
Sbjct: 438 VQATEVTYSSALRACASLAALEPGLQI--HSLTVKPDKLTFVGVLSAC-ANAGLLDQGQA 494

Query: 433 VRNIMIQ 439
               MIQ
Sbjct: 495 YFTSMIQ 501



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 161/319 (50%), Gaps = 17/319 (5%)

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIVSNISPSNY---TFSAVIKSCAHLSILNLGRAVHCH 131
           N  +I+ S+  FS  S    +   V ++SPS +    ++  ++ C      + G+ +HC 
Sbjct: 5   NNFLIQFSRRGFSVQSAKLTQEF-VGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCE 63

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           +   G   DL     L+N Y KS+ +  A K+FD MP+++ +++ ++I GY ++    EA
Sbjct: 64  ILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEA 123

Query: 192 IGLFNLMRDFG--VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           I LF  +   G  +NP   T +  L      G++  G  +H  I   G + N  + T+LI
Sbjct: 124 IELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWG--IHACIFKLGHESNAFVGTALI 181

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           + Y+ CG V  ARE+FD +   ++++WT M++ +  +    EA++LF +MR  G +PNN 
Sbjct: 182 DAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNF 241

Query: 310 TFVAVLSACAHAGLVQEGHRVFA---SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           TF +V  AC        G  V       R E  L  G    V ++DL+ ++G +++A + 
Sbjct: 242 TFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVG----VALLDLYTKSGDIDDARRA 297

Query: 367 VKDVIGEKPAPAVWTAMLG 385
            +++  +   P  W+ M+ 
Sbjct: 298 FEEIPKKDVIP--WSFMIA 314



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 163/322 (50%), Gaps = 15/322 (4%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P++  + ++ KA   L+     + VH   + + Y     +   LL L   +G I  A+R
Sbjct: 237 KPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARR 296

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            F  IP  D   ++ +I R ++++ S +++  + +M  + + P+ +TF++V+++CA +  
Sbjct: 297 AFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEG 356

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           LNLG  +HCHV   G  SD+ V  AL++ YAK   ++ + ++F   P ++ V WN++I G
Sbjct: 357 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVG 416

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + Q G  ++A+ LF  M ++ V     T    L ACA L  ++ G  +H   V      +
Sbjct: 417 HVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKP----D 472

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIA-----WTAMISGYGMHGYGTEAVELF 296
            +    +++  A  G + + +  F  M + + I      +T M+   G  G+  +AV+L 
Sbjct: 473 KLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLI 532

Query: 297 HRMRAHGVRPNNVTFVAVLSAC 318
             +     +P+ + + A+L AC
Sbjct: 533 DEI---PFQPSVMVWRALLGAC 551


>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
 gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
          Length = 448

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/445 (41%), Positives = 287/445 (64%), Gaps = 2/445 (0%)

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G +++  V  +LVN Y + +++  AR VF+R+P K  + WN++++ Y Q+G+ KEA+ +F
Sbjct: 6   GLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALEIF 65

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             M+  GV   S T + VL ACA    + LGR +H+ +V  GLD  +++AT+L+NMYA+C
Sbjct: 66  QRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVATALVNMYAKC 125

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G + +ARE+FD M  ++V+AWTA+++G   HG+  E+ +L  RM   G++PNNVTF++++
Sbjct: 126 GKLVEAREVFDQMEGMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNVTFLSLV 185

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
            AC+H+G + E    F +M  ++G  P  EH  C++DL GR G L EA + + D +  +P
Sbjct: 186 FACSHSGYLDEARDCFIAM-ADHGFFPLPEHFRCVIDLLGRGGRLEEAQEVI-DTMPFEP 243

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
               W  ML AC++ K+       AE    +EP  P  Y+++SN+YA   R D V+ VR 
Sbjct: 244 GLTAWLTMLSACRLQKDVLRAEIAAEKCYEIEPTRPSAYLLMSNLYAALERWDDVKKVRR 303

Query: 436 IMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESES 495
           +M ++G+KK  G S +EV  + + F   +KSHP  + IY+ L +L    +EAGYVP++  
Sbjct: 304 LMERRGVKKEPGLSCIEVKNRLHEFGAANKSHPQKDLIYEELRKLTLEIKEAGYVPDTSL 363

Query: 496 AMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
            +H ++EE ++ +L +HSE+LA+ +GL+ T PG ++ +V NLRMC DCH+A K+IS  +N
Sbjct: 364 VLHNVDEETKQATLFHHSERLAVVYGLINTPPGTSLCVVNNLRMCSDCHTAFKYISTISN 423

Query: 556 REIIVRDRLRFHHFKRGSCSCLDYW 580
           REI+VRD  RFH F  G CSC DYW
Sbjct: 424 REIVVRDANRFHTFATGGCSCKDYW 448



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 1/225 (0%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+ +F  IP  D+  +N ++   ++  +  ++L  ++RM    +   + TF +V+++CA 
Sbjct: 30  ARLVFERIPCKDAITWNAIVTAYAQDGYGKEALEIFQRMQQEGVKTGSATFISVLEACAS 89

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
            S L LGR +H ++  +G D +L V  ALVN YAK   +  AR+VFD+M    VVAW ++
Sbjct: 90  TSALALGRVIHQNLVANGLDRELIVATALVNMYAKCGKLVEAREVFDQMEGMDVVAWTAI 149

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           ++G  Q+G  +E+  L   M   G+ P++ T + ++ AC+  G +D  R     +   G 
Sbjct: 150 VAGSAQHGHIEESKDLMRRMELEGIKPNNVTFLSLVFACSHSGYLDEARDCFIAMADHGF 209

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISG 282
                    +I++  R G + +A+E+ D M  E  + AW  M+S 
Sbjct: 210 FPLPEHFRCVIDLLGRGGRLEEAQEVIDTMPFEPGLTAWLTMLSA 254



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 1/156 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H +L+  G  R   + T L+++    G +  A+ +F  +   D   +  ++  +++   
Sbjct: 99  IHQNLVANGLDRELIVATALVNMYAKCGKLVEAREVFDQMEGMDVVAWTAIVAGSAQHGH 158

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             +S    RRM +  I P+N TF +++ +C+H   L+  R     +   G+         
Sbjct: 159 IEESKDLMRRMELEGIKPNNVTFLSLVFACSHSGYLDEARDCFIAMADHGFFPLPEHFRC 218

Query: 147 LVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMISG 181
           +++   +   ++ A++V D MP +  + AW +M+S 
Sbjct: 219 VIDLLGRGGRLEEAQEVIDTMPFEPGLTAWLTMLSA 254


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/580 (37%), Positives = 339/580 (58%), Gaps = 33/580 (5%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P++  + ++ KA   L+     + VH   + + Y     +   LL L   +G I  A+ 
Sbjct: 237 KPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARX 296

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            F  IP  D   ++ +I R ++++ S +++  + +M  + + P+ +TF++V+++CA +  
Sbjct: 297 AFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEG 356

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS-VVAWNSMIS 180
           LNLG  +HCHV   G  SD+ V  AL++ YAK   ++ +  +F   P ++ V  WN++I 
Sbjct: 357 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIV 416

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           G+ Q G  ++A+ LF  M ++ V     T    L ACA L  ++ G  +H   V    D 
Sbjct: 417 GHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDK 476

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           ++V+  +LI+MYA+CG++  AR +FD+M++ + ++W AMISGY MHG             
Sbjct: 477 DIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGL------------ 524

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
                           ACA+AGL+ +G   F SM Q++G+ P +EH+ CMV L GR G L
Sbjct: 525 ----------------ACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHL 568

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
           ++A K + D I  +P+  VW A+LGAC +H + +LG   A+H+L +EP++   +V+LSN+
Sbjct: 569 DKAVKLI-DEIPFQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEPQDKATHVLLSNM 627

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA A R D V  VR  M +KG+KK  G S +E     + F++GD SHP    I   L+ L
Sbjct: 628 YATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWL 687

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
             + ++AGY+P     + ++E+EE+E  L  HSE+LAL+FG++RT  G  IRI+KNLR+C
Sbjct: 688 HMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRIC 747

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           VDCH+AIK IS    REI+VRD  RFHHF+ G CSC DYW
Sbjct: 748 VDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 190/365 (52%), Gaps = 4/365 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +HA +   G+  +  + T L+      G +  A+ +F  I   D   +  ++   ++ + 
Sbjct: 161 IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDC 220

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             ++L  + +M +    P+N+TF++V K+C  L   ++G++VH     S Y+ DL+V  A
Sbjct: 221 FKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVA 280

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ Y KS ++D AR  F+ +P K V+ W+ MI+ Y Q+  +KEA+ +F  MR   V P+
Sbjct: 281 LLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPN 340

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T   VL ACA +  ++LG  +H  ++  GL  +V ++ +L+++YA+CG +  +  +F 
Sbjct: 341 QFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFA 400

Query: 267 MMSELN-VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
                N V  W  +I G+   G G +A+ LF  M  + V+   VT+ + L ACA    ++
Sbjct: 401 ESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALE 460

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            G ++  S+  +      +     ++D++ + G + +A + V D++  K     W AM+ 
Sbjct: 461 PGLQIH-SLTVKTTFDKDIVVTNALIDMYAKCGSIKDA-RLVFDLMN-KQDEVSWNAMIS 517

Query: 386 ACKMH 390
              MH
Sbjct: 518 GYSMH 522



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 167/313 (53%), Gaps = 1/313 (0%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LL++   + F+  A ++F  +P  ++  F TLI   +++    +++  + R+       +
Sbjct: 79  LLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELN 138

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            + F+ ++K    +    LG  +H  +F  G++S+  V  AL++ Y+    VDVAR+VFD
Sbjct: 139 PFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFD 198

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            +  K +V+W  M++ + +N   KEA+ LF+ MR  G  P++ T   V  AC  L   D+
Sbjct: 199 GILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDV 258

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ VH   +    ++++ +  +L+++Y + G++  AR  F+ + + +VI W+ MI+ Y  
Sbjct: 259 GKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQ 318

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
                EAVE+F +MR   V PN  TF +VL ACA    +  G+++   + +  GL   V 
Sbjct: 319 SDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK-IGLHSDVF 377

Query: 346 HHVCMVDLFGRAG 358
               ++D++ + G
Sbjct: 378 VSNALMDVYAKCG 390



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 160/319 (50%), Gaps = 17/319 (5%)

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYT---FSAVIKSCAHLSILNLGRAVHCH 131
           N  +IR S+  FS  S    +   V ++SPS +    ++  ++ C      + G+ +HC 
Sbjct: 5   NNFLIRFSRRGFSVQSAKLTQE-FVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCE 63

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           +   G   DL     L+N Y KS+ +  A K+FD MP+++ +++ ++I GY ++    EA
Sbjct: 64  ILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEA 123

Query: 192 IGLFNLMRDFG--VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           I LF  +   G  +NP   T +  L      G++  G  +H  I   G + N  + T+LI
Sbjct: 124 IELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWG--IHACIFKLGHESNAFVGTALI 181

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           + Y+ CG V  ARE+FD +   ++++WT M++ +  +    EA++LF +MR  G +PNN 
Sbjct: 182 DAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNF 241

Query: 310 TFVAVLSACAHAGLVQEGHRVFA---SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
           TF +V  AC        G  V       R E  L  G    V ++DL+ ++G +++A   
Sbjct: 242 TFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVG----VALLDLYTKSGDIDDARXA 297

Query: 367 VKDVIGEKPAPAVWTAMLG 385
            +++  +   P  W+ M+ 
Sbjct: 298 FEEIPKKDVIP--WSFMIA 314


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/561 (39%), Positives = 329/561 (58%), Gaps = 8/561 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI--IRNS 82
           QQ H   I  G     S+   LL+L  +   +   Q++F  +   D   +NT+I  + +S
Sbjct: 224 QQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADS 283

Query: 83  KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
            A+ S +++  +  M+ +  SP+  TF  ++ + + LS   L   +H  +       D  
Sbjct: 284 GASVS-EAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNA 342

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
           ++ AL+  Y KS  ++   ++F RM ++   V+WNSMISGY  N    +A+ L  LM   
Sbjct: 343 IENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQR 402

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G   D  T   VL+ACA +  ++ G  VH   +   L+ +VV+ ++L++MY++CG +  A
Sbjct: 403 GQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYA 462

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
              F++M   N+ +W +MISGY  HG+G  A+ LF RM+  G  P+++TFV VLSAC+H 
Sbjct: 463 SRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHI 522

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
           GLV EG   F SM + YGL+P VEH+ CMVDL GRAG L++   F+ + +  KP   +W 
Sbjct: 523 GLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFI-NKMPIKPNILIWR 581

Query: 382 AMLGAC--KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
            +LGAC     +  +LG   AE L +++P+N  +YV+LSN+YA  G+ + +   R  M +
Sbjct: 582 TVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMRE 641

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
             +KK  G S V +    ++F  GD SHP    IY  L EL  + R+AGYVP+ + A+++
Sbjct: 642 AAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYD 701

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           LE E +E  L YHSEKLA+AF L R S G+ IRI+KNLR+C DCHSA K+IS   +R I+
Sbjct: 702 LEPENKEELLSYHSEKLAVAFVLTRNS-GLPIRIMKNLRVCGDCHSAFKYISKVVDRSIV 760

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           +RD  RFHHF+ G CSC DYW
Sbjct: 761 LRDSNRFHHFEDGKCSCRDYW 781



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 181/360 (50%), Gaps = 5/360 (1%)

Query: 28  HAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFS 87
           H +++  G+     +   L+++    G    A+++F  +P  +   +  LI   ++    
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 88  TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL-GRAVHCHVFVSGY-DSDLHVQA 145
            D+    + MI     P+ + F + I++C    +    GR VH +   +G  D+ + V  
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGN 142

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
            L+N YAK  ++D AR VF  M DK  V+WNSMI+G +QN   ++A+  +N MR  G+ P
Sbjct: 143 GLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMP 202

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
            +   +  L++CA LG I LG+  H   +  GLD++V ++ +L+ +YA    +++ +++F
Sbjct: 203 SNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVF 262

Query: 266 DMMSELNVIAWTAMISGYGMHGYG-TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
             M E + ++W  +I      G   +EA+E+F  M   G  PN VTF+ +L+  +     
Sbjct: 263 SWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTS 322

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           +  H++ A + + Y +         ++  +G++G + E  + +   + E+     W +M+
Sbjct: 323 KLSHQIHALILK-YNVKDDNAIENALLACYGKSGEM-ENCEEIFSRMSERRDEVSWNSMI 380


>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 611

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/606 (37%), Positives = 333/606 (54%), Gaps = 63/606 (10%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF----ITYAQRIFFCIPSPDSFLFNT 76
           LK  +Q+H HL V G         KLL L C        + Y+ R+F   P+PD+F++NT
Sbjct: 23  LKTTKQIHTHLYVTGLHTHPFFFGKLL-LNCAVSISDHVLNYSLRLFHHFPNPDTFMYNT 81

Query: 77  LIIRNSKANFSTDSLL-FYRRMIVSNISPSNYTFSAVIKSCAHLSILN-LGRAVHCHVFV 134
           LI   S ++    SL  F + +    + P +++F+  +K  A+       G  +H H F 
Sbjct: 82  LIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIANDGCSKRQGIQLHSHAFR 141

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN------------------ 176
            G+D  + V   L++ YA+    + ARKVFD M   +VVAWN                  
Sbjct: 142 HGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFRCGMWRVLGVS 201

Query: 177 --------------------SMISGYEQNGFAKEAIGLFN-LMRDFGVNPDSTTCVCVLA 215
                               +MI G+ ++G   +A G F  L+RD    P   +   VL+
Sbjct: 202 FGWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDRN-RPSEVSLTGVLS 260

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           ACAQ G  + G+ +H F+   G    V +  +LI+ Y++CGNV  A+ +F++        
Sbjct: 261 ACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFNI-------- 312

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
                    MHG   EA+ +FH M   GVRP+ VTF+++L AC+H+GLV++G  +F+ MR
Sbjct: 313 ------SLAMHGRADEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMR 366

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
             YG+ P +EH+ CMVDL+GRA  L +AY+F++  +   P   +W  +LGAC +H N +L
Sbjct: 367 NFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQ-MPILPNVIIWRTLLGACSIHGNIEL 425

Query: 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455
              V   L  ++P N G +V+LSN+YA+AG+   V  +R  MI++ +KK  G+S +E+D+
Sbjct: 426 AELVKARLAEMDPNNSGDHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKIPGWSMIEIDK 485

Query: 456 KNYLFSMGDKSHPNTNEIYQYLDELMGRCREA-GYVPESESAMHELEEEEREYSLRYHSE 514
            NY F  G+K +  T E +  L E+M R RE  GY P+  S +H++EEEE+E S+  HSE
Sbjct: 486 VNYGFVAGEKPNEVTKEAHDKLREIMLRLREEEGYAPQVRSVLHDVEEEEKEDSMSKHSE 545

Query: 515 KLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSC 574
           KLA AFG+ +   G  +RIVKNLR+C DCH+ +K IS     EIIVRDR RFH FK G C
Sbjct: 546 KLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKGGFC 605

Query: 575 SCLDYW 580
           SC DYW
Sbjct: 606 SCRDYW 611


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/596 (35%), Positives = 353/596 (59%), Gaps = 26/596 (4%)

Query: 10  AYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
            Y ++L+    LK +Q   ++H+ +          + +KL+ +    G +   +RIF  +
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI---VSNISPSNYTF-----------SAV 112
            +   FL+N L+   +K     +SL  ++RM    +  +  +   F           +++
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA--------LVNFYAKSNNVDVARKVF 164
           I       +   G  +   + + G ++DL    +        L++ Y+KS N++ A +VF
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVF 282

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           + M ++SVV+W SMI+GY + G +  ++ LF+ M    + P+S T  C+L ACA L  ++
Sbjct: 283 ETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALE 342

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
            G+ +H  I+  G  ++  +A +L++MY +CG +  AR +FDM+ E ++++WT MI+GYG
Sbjct: 343 RGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYG 402

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
           MHGYG+EA+  F+ MR  G+ P+ V+F+++L AC+H+GL+ EG   F  MR    + P  
Sbjct: 403 MHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKS 462

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           EH+ C+VDL  RAG L++AYKF+K ++  +P   +W A+L  C+++ +  L  +VAEH+ 
Sbjct: 463 EHYACIVDLLARAGNLSKAYKFIK-MMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVF 521

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
            +EPEN G+YV+L+NIYA A + + V+ +R  + ++GL+K+ G S +E+  K ++F  GD
Sbjct: 522 ELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGD 581

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
            SHP  N+I   L +   R +E G+ P+   A+ + ++ E+E +L  HSEK+A+AFG++ 
Sbjct: 582 SSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILS 641

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             PG T+R+ KNLR+C DCH   KF+S    R+II+RD  RFHHFK GSCSC  +W
Sbjct: 642 LPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 144/313 (46%), Gaps = 36/313 (11%)

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD---STTCVCVLAACAQLGDIDL 225
           D  +  +N  I  + + G  + A+ L N        PD    T C  VL  CA L  I  
Sbjct: 65  DCKITDYNIEICRFCELGNLRRAMELINQ----SPKPDLELRTYC-SVLQLCADLKSIQD 119

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           GR +H  I    ++V+ VL + L+ MY  CG++ + R IFD ++   V  W  +++GY  
Sbjct: 120 GRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAK 179

Query: 286 HGYGTEAVELFHRMRAHGVR--------------PNNVTFVAVLSACAHAGLVQEGHRVF 331
            G   E++ LF RMR  G+R               + +++ +++S     GL ++G  +F
Sbjct: 180 IGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLF 239

Query: 332 ASM-----RQEYGLLPGVEHHV--CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
             M       +   +  VE  +  C++D++ ++G LN A + V + +GE+   + WT+M+
Sbjct: 240 EQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQ-VFETMGERSVVS-WTSMI 297

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVEVVRNIMIQKG- 441
                    D+ V +  H +  E   P    M   + A A    ++R + +   +++ G 
Sbjct: 298 AGYAREGLSDMSVRLF-HEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGF 356

Query: 442 -LKKHVGYSTVEV 453
            L +HV  + V++
Sbjct: 357 SLDRHVANALVDM 369



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 82/186 (44%), Gaps = 15/186 (8%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+S     IL A   L  L   Q++H H++  G+   R +   L+ +    G +  A+ +
Sbjct: 323 PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLL 382

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  IP  D   +  +I       + ++++  +  M  S I P   +F +++ +C+H  +L
Sbjct: 383 FDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLL 442

Query: 123 NLGRAVHCHVFVSGYDSDLHVQ------AALVNFYAKSNNVDVARKVFDRMP-DKSVVAW 175
           + G       F +   ++  ++      A +V+  A++ N+  A K    MP +     W
Sbjct: 443 DEGWG-----FFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIW 497

Query: 176 NSMISG 181
            +++ G
Sbjct: 498 GALLCG 503


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/526 (39%), Positives = 326/526 (61%), Gaps = 12/526 (2%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLL-FYRRMIVSNISPSNYTFSAVIK 114
           + YA ++F  +   D   +  LI    ++    + ++  +  M+  +I P++ T+S+++K
Sbjct: 308 MDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILK 367

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           +CA++S  + GR VH HV  S   +   V  ALV+ YA+S  ++ AR+VF+++ ++S+++
Sbjct: 368 ACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIS 427

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
              +  G  ++      IG      D G++  S+T   +++A A +G +  G+ +H   +
Sbjct: 428 --CITEG--RDAPLDHRIGRM----DMGIS--SSTFASLISAAASVGMLTKGQQLHAMTL 477

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             G   +  ++ SL++MY+RCG +  A   F+ + + NVI+WT+MISG   HGY   A+ 
Sbjct: 478 KAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALS 537

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
           LFH M   GV+PN+VT++AVLSAC+H GLV+EG   F SM++++GL+P +EH+ CMVDL 
Sbjct: 538 LFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLL 597

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            R+GL+ EA +F+ + +  K    VW  +LGAC+ H N ++G   A++++ +EP +P  Y
Sbjct: 598 ARSGLVKEALEFINE-MPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPY 656

Query: 415 VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIY 474
           V+LSN+YA AG  D V  +R+ M    L K  G S +EV+   + F  GD SHP   +IY
Sbjct: 657 VLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIY 716

Query: 475 QYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIV 534
             LD L+G  +  GYVP++   +H++ +E +E  L  HSEK+A+AFGL+ TS    IRI 
Sbjct: 717 GKLDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIF 776

Query: 535 KNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KNLR+C DCHSAIK++S AT REII+RD  RFH  K G CSC +YW
Sbjct: 777 KNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 150/293 (51%), Gaps = 27/293 (9%)

Query: 89  DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG---------YDS 139
           +SLL    M+ S + P+ YT  AV  +C           ++C V             + +
Sbjct: 134 ESLLLIGEMLESGLLPNAYTLCAVAHAC-------FPHELYCLVGGVVLGLVHKMGLWGT 186

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D+ V +AL++  A++ ++  ARKVFD + +K+VV W  +IS Y Q   A+EA+ +F    
Sbjct: 187 DIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFL 246

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
           + G  PD  T   +++AC +LG + LG  +H   +  G   +  ++  L++MYA+  N+ 
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAK-SNIE 305

Query: 260 K----AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE-LFHRMRAHGVRPNNVTFVAV 314
           +    A ++F+ M + +VI+WTA+ISGY   G     V  LF  M    ++PN++T+ ++
Sbjct: 306 QAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSI 365

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV--CMVDLFGRAGLLNEAYK 365
           L ACA+      G +V A + +         H V   +V ++  +G + EA +
Sbjct: 366 LKACANISDHDSGRQVHAHVIKSN---QAAAHTVGNALVSMYAESGCMEEARR 415



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 171/341 (50%), Gaps = 24/341 (7%)

Query: 5   QPHSPAYEAILKAGPRLK---PLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   Y +ILKA   +      +QVHAH+I +    + ++   L+S+  ++G +  A+R
Sbjct: 356 KPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARR 415

Query: 62  IFFCIPSPDSFLFNTLIIRN--SKANFSTDSLLFYR--RMIVSNISPSNYTFSAVIKSCA 117
           +           FN L  R+  S      D+ L +R  RM   ++  S+ TF+++I + A
Sbjct: 416 V-----------FNQLYERSMISCITEGRDAPLDHRIGRM---DMGISSSTFASLISAAA 461

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            + +L  G+ +H     +G+ SD  V  +LV+ Y++   ++ A + F+ + D++V++W S
Sbjct: 462 SVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTS 521

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR-WVHEFIVGQ 236
           MISG  ++G+A+ A+ LF+ M   GV P+  T + VL+AC+ +G +  G+ +        
Sbjct: 522 MISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDH 581

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVEL 295
           GL   +     ++++ AR G V +A E  + M  + + + W  ++     H    E  E+
Sbjct: 582 GLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHD-NIEVGEI 640

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
             +        +   +V + +  A AGL  E  R+ ++MR 
Sbjct: 641 AAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRD 681


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/578 (36%), Positives = 323/578 (55%), Gaps = 36/578 (6%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           RS S    ++SL    G +  A+ +F  +P      +N +I   ++      +L  + RM
Sbjct: 228 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 287

Query: 98  I-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           +  S+++P  +T ++V+ +CA+L  + +G+ VH ++  +    +  V  AL++ YAKS +
Sbjct: 288 LHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGS 347

Query: 157 VDVARKVFDR---------------------------------MPDKSVVAWNSMISGYE 183
           V+ AR++ D+                                 M ++ VVAW +MI GYE
Sbjct: 348 VENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYE 407

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG   EAI LF  M   G  P+S T   VL+ CA L  +D G+ +H   +   L+ +  
Sbjct: 408 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSS 467

Query: 244 LATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           ++ ++I MYAR G+   AR +FD +      I WT+MI     HG G EAV LF  M   
Sbjct: 468 VSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRA 527

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV P+ +T+V VLSAC+HAG V EG R +  ++ E+ + P + H+ CMVDL  RAGL +E
Sbjct: 528 GVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSE 587

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A +F++ +  E P    W ++L AC++HKN +L    AE LLS++P N G Y  ++N+Y+
Sbjct: 588 AQEFIRRMPVE-PDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYS 646

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             GR      +     +K ++K  G+S   +  K ++F   D  HP  + +Y     +  
Sbjct: 647 ACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWE 706

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             + AG+VP+ +S +H++++E +E  L  HSEKLA+AFGL+ T    T+R++KNLR+C D
Sbjct: 707 EIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCND 766

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+AIK IS  T+REIIVRD  RFHHF+ G CSC DYW
Sbjct: 767 CHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 204/441 (46%), Gaps = 71/441 (16%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LLS+   +G +  A+ +F  +P  D+  +  +++  ++A    +++     M     +P+
Sbjct: 104 LLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPT 163

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            +T + V+ SCA      +GR VH  V   G  S + V  +++N Y K  + + A  VF+
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFE 223

Query: 166 RMPDKSV-------------------------------VAWNSMISGYEQNGFAKEAIGL 194
           RMP +SV                               V+WN+MI+GY QNG   +A+ L
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKL 283

Query: 195 FN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL--------------- 238
           F+ ++ +  + PD  T   VL+ACA LG++ +G+ VH +I+   +               
Sbjct: 284 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 343

Query: 239 ------------------DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
                             D+NV+  T+L+  Y + G++  ARE+F +M+  +V+AWTAMI
Sbjct: 344 KSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMI 403

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYG 339
            GY  +G   EA++LF  M   G  PN+ T  AVLS CA    +  G ++   ++R    
Sbjct: 404 VGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLE 463

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
               V + +  + ++ R+G    A +    V   K     WT+M+ A   H   +  V +
Sbjct: 464 QSSSVSNAI--ITMYARSGSFPWARRMFDQVCWRKET-ITWTSMIVALAQHGQGEEAVGL 520

Query: 400 AEHLL--SVEPENPGHYVMLS 418
            E +L   VEP+   +  +LS
Sbjct: 521 FEEMLRAGVEPDRITYVGVLS 541



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 129/272 (47%), Gaps = 35/272 (12%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           +L++ +AKS  +  AR VF  MP++  V+W  M+ G  + G   EAI     M   G  P
Sbjct: 103 SLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTP 162

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN-------- 257
              T   VL++CA      +GR VH F+V  GL   V +A S++NMY +CG+        
Sbjct: 163 TQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVF 222

Query: 258 -----------------------VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
                                  +  A  +F+ M + ++++W AMI+GY  +G   +A++
Sbjct: 223 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALK 282

Query: 295 LFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEHHVCMVD 352
           LF RM     + P+  T  +VLSACA+ G V+ G +V A  +R E      V +   ++ 
Sbjct: 283 LFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALIS 340

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            + ++G +  A + +   +        +TA+L
Sbjct: 341 TYAKSGSVENARRIMDQSMETDLNVISFTALL 372



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 17/174 (9%)

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           NV    SL++M+A+ G ++ AR +F  M E + ++WT M+ G    G   EA++    M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 301 AHGVRPNNVTFVAVLSACA--HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           A G  P   T   VLS+CA   AG V  G +V  S   + GL   V     +++++G+ G
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAV--GRKVH-SFVVKLGLGSCVPVANSVLNMYGKCG 213

Query: 359 LLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLG-VEVAEHLLSVEPE 409
               A      V    P  +V  W AM+       N  LG +++AE L    P+
Sbjct: 214 DSETA----TTVFERMPVRSVSSWNAMVSL-----NTHLGRMDLAESLFESMPD 258



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/183 (19%), Positives = 87/183 (47%), Gaps = 6/183 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+S    A+L     L  L   +Q+H   I +   +S S+   ++++   +G   +A+R
Sbjct: 428 EPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARR 487

Query: 62  IFFCI-PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           +F  +    ++  + ++I+  ++     +++  +  M+ + + P   T+  V+ +C+H  
Sbjct: 488 MFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAG 547

Query: 121 ILNLGRAVHCHVFVS-GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSM 178
            +N G+  +  +        ++   A +V+  A++     A++   RMP +   +AW S+
Sbjct: 548 FVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSL 607

Query: 179 ISG 181
           +S 
Sbjct: 608 LSA 610


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/562 (36%), Positives = 334/562 (59%), Gaps = 7/562 (1%)

Query: 25  QQVHAHLIVAGYG--RSRSMLTKLLSLVCDAGFITYAQRIFFCIPS--PDSFLFNTLIIR 80
           +++H HL+ +      + ++ TKL++L    G +  A+R+F       P+  ++  + I 
Sbjct: 90  RKLHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPVWVAMAIG 149

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY-DS 139
            S+  FS ++LL YR M+   + P N+ FS  +K+C+ L    +GRA+H  +      ++
Sbjct: 150 YSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEA 209

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D  V  AL+  Y +    D   KVF+ MP ++VV+WN++I+G+   G   E +  F +M+
Sbjct: 210 DQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQ 269

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+     T   +L  CAQ+  +  G+ +H  I+    + +V L  SL++MYA+CG + 
Sbjct: 270 REGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIG 329

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
              ++FD M   ++ +W  M++G+ ++G   EA+ LF  M  +G+ PN +TFVA+LS C+
Sbjct: 330 YCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCS 389

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H+GL  EG R+F+++ Q++G+ P +EH+ C+VD+ GR+G  +EA   V + I  +P+ ++
Sbjct: 390 HSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALS-VAENIPMRPSGSI 448

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W ++L +C+++ N  L   VAE L  +EP NPG+YVMLSNIYA AG  + V+ VR +M  
Sbjct: 449 WGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWEDVKRVREMMAL 508

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL-DELMGRCREAGYVPESESAMH 498
            G+KK  G S +++  K + F  G  S    +  Y+ + +EL    +  GYVP +   +H
Sbjct: 509 TGMKKDAGCSWIQIKHKIHTFVAGGSSDFRCSAEYKKIWNELSNAVKNLGYVPNTGVVLH 568

Query: 499 ELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558
           ++ EE +   +  HSE+LA  F L+ T  GM IRI KNLR+CVDCHS +K +S  T R I
Sbjct: 569 DINEEMKAVWVCEHSERLAAVFALINTGAGMPIRITKNLRVCVDCHSWMKAVSKVTRRLI 628

Query: 559 IVRDRLRFHHFKRGSCSCLDYW 580
           ++RD  RFHHF+ GSCSC DYW
Sbjct: 629 VLRDTNRFHHFENGSCSCKDYW 650


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/578 (36%), Positives = 323/578 (55%), Gaps = 36/578 (6%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           RS S    ++SL    G +  A+ +F  +P      +N +I   ++      +L  + RM
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181

Query: 98  I-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           +  S+++P  +T ++V+ +CA+L  + +G+ VH ++  +    +  V  AL++ YAKS +
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGS 241

Query: 157 VDVARKVFDR---------------------------------MPDKSVVAWNSMISGYE 183
           V+ AR++ D+                                 M ++ VVAW +MI GYE
Sbjct: 242 VENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYE 301

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG   EAI LF  M   G  P+S T   VL+ CA L  +D G+ +H   +   L+ +  
Sbjct: 302 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSS 361

Query: 244 LATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           ++ ++I MYAR G+   AR +FD +      I WT+MI     HG G EAV LF  M   
Sbjct: 362 VSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRA 421

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV P+ +T+V VLSAC+HAG V EG R +  ++ E+ + P + H+ CMVDL  RAGL +E
Sbjct: 422 GVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSE 481

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A +F++ +  E P    W ++L AC++HKN +L    AE LLS++P N G Y  ++N+Y+
Sbjct: 482 AQEFIRRMPVE-PDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYS 540

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             GR      +     +K ++K  G+S   +  K ++F   D  HP  + +Y     +  
Sbjct: 541 ACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWE 600

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             + AG+VP+ +S +H++++E +E  L  HSEKLA+AFGL+ T    T+R++KNLR+C D
Sbjct: 601 EIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCND 660

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+AIK IS  T+REIIVRD  RFHHF+ G CSC DYW
Sbjct: 661 CHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 201/438 (45%), Gaps = 71/438 (16%)

Query: 49  LVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYT 108
           +   +G +  A+ +F  +P  D+  +  +++  ++A    +++     M     +P+ +T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
            + V+ SCA      +GR VH  V   G  S + V  +++N Y K  + + A  VF+RMP
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 169 DKSV-------------------------------VAWNSMISGYEQNGFAKEAIGLFN- 196
            +SV                               V+WN+MI+GY QNG   +A+ LF+ 
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL------------------ 238
           ++ +  + PD  T   VL+ACA LG++ +G+ VH +I+   +                  
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 239 ---------------DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
                          D+NV+  T+L+  Y + G++  ARE+F +M+  +V+AWTAMI GY
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 300

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLP 342
             +G   EA++LF  M   G  PN+ T  AVLS CA    +  G ++   ++R       
Sbjct: 301 EQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSS 360

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
            V + +  + ++ R+G    A +    V   K     WT+M+ A   H   +  V + E 
Sbjct: 361 SVSNAI--ITMYARSGSFPWARRMFDQVCWRKET-ITWTSMIVALAQHGQGEEAVGLFEE 417

Query: 403 LL--SVEPENPGHYVMLS 418
           +L   VEP+   +  +LS
Sbjct: 418 MLRAGVEPDRITYVGVLS 435



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/183 (19%), Positives = 87/183 (47%), Gaps = 6/183 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+S    A+L     L  L   +Q+H   I +   +S S+   ++++   +G   +A+R
Sbjct: 322 EPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARR 381

Query: 62  IFFCI-PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           +F  +    ++  + ++I+  ++     +++  +  M+ + + P   T+  V+ +C+H  
Sbjct: 382 MFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAG 441

Query: 121 ILNLGRAVHCHVFVS-GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSM 178
            +N G+  +  +        ++   A +V+  A++     A++   RMP +   +AW S+
Sbjct: 442 FVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSL 501

Query: 179 ISG 181
           +S 
Sbjct: 502 LSA 504


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/628 (37%), Positives = 344/628 (54%), Gaps = 73/628 (11%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSM---LTKLLSLVCDAGFITYAQRIFFCIPSP 69
           A+L   P ++ +QQ HA L V G   SR+M   L  L  L+ D        R        
Sbjct: 37  ALLPPSPTVRQVQQAHARLAVLGLAASRAMPHLLAVLPRLLPD----KPRHRGDDGGGDG 92

Query: 70  DSFLFNTLIIR--NSKANFSTDSLL--------------FYRRMIVSNISPSNYTF---- 109
           D + +   + R  NS + F++++LL              F RR      +P ++TF    
Sbjct: 93  DHYAYPLALFRRANSTSAFASNNLLRVLPHPLPLTLFSRFRRR------NPHSFTFLLAS 146

Query: 110 -----SAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
                +A   S +  S L  G  VH     +G   DL V+ ALV+FY  S +V   R+VF
Sbjct: 147 ISNHLNAAGPSASACSFL--GSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVF 204

Query: 165 DRMPD-KSVVAWNSMISGYEQ--------------------------NGFAKE-----AI 192
           D +P  + V+ WN +++GY +                           G+ KE     A+
Sbjct: 205 DELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVAL 264

Query: 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252
           G+F  M + GV P+    V  L+A A+LG ++ G++VH  +   G+ V + +  +L++MY
Sbjct: 265 GVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMY 324

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
           A+CG V+ ARE+FD M   +V AW AMI G   HG G +AVELF R  + G+ P NVTFV
Sbjct: 325 AKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFV 384

Query: 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372
            VL+ C+ +GLV EG R F  + ++Y + P +EH+ CMVDL GRAGL+ EA + ++  + 
Sbjct: 385 GVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEG-MH 443

Query: 373 EKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432
             P P +W  +L +CK H   DLGV V   L+ ++P + G+YV+LS IYA A + D V  
Sbjct: 444 IAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVRE 503

Query: 433 VRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPE 492
           VR +M  +G  K  G+S +E   K + F +GD  H ++ +IY  LD +  R  EAGYVP+
Sbjct: 504 VRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPD 563

Query: 493 SESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISV 552
             S +H++ EEE+ ++++ HSE+LA+A+G +    G  IRIVKNLR+C DCH   K +++
Sbjct: 564 VSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTM 623

Query: 553 ATNREIIVRDRLRFHHFKRGSCSCLDYW 580
              REIIVRD  RFHH K G CSCLDYW
Sbjct: 624 VFQREIIVRDGSRFHHMKEGKCSCLDYW 651


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/552 (38%), Positives = 320/552 (57%), Gaps = 28/552 (5%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G   YA+++F  IP P++  +N ++  +       D+  F+  M + +++  N   SA+ 
Sbjct: 87  GHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALA 146

Query: 114 -----------------KSCAHLSIL--------NLGRAVHCHVFVSGYDSDLHVQAALV 148
                            K+C   S +        +L  AV C  F +     +    A++
Sbjct: 147 QVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVEC--FYAAPMRSVITWTAMI 204

Query: 149 NFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
             Y K   V++A ++F  M  +++V WN+MI+GY +NG A++ + LF  M + GV P++ 
Sbjct: 205 TGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNAL 264

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           +   VL  C+ L  + LG+ VH+ +    L  +    TSL++MY++CG++  A E+F  +
Sbjct: 265 SLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQI 324

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
              +V+ W AMISGY  HG G +A+ LF  M+  G++P+ +TFVAVL AC HAGLV  G 
Sbjct: 325 PRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGV 384

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
           + F +MR+++G+    EH+ CMVDL GRAG L+EA   +K  +  KP PA++  +LGAC+
Sbjct: 385 QYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKS-MPFKPHPAIYGTLLGACR 443

Query: 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGY 448
           +HKN +L    A++LL ++P     YV L+N+YA   R D V  +R  M    + K  GY
Sbjct: 444 IHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGY 503

Query: 449 STVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYS 508
           S +E++   + F   D+ HP    I++ L +L  + + AGYVP+ E  +H++ EE +E  
Sbjct: 504 SWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQL 563

Query: 509 LRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHH 568
           L +HSEKLA+AFGL++   G+ IR+ KNLR+C DCHSA K+IS    REIIVRD  RFHH
Sbjct: 564 LLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHH 623

Query: 569 FKRGSCSCLDYW 580
           FK G CSC DYW
Sbjct: 624 FKDGFCSCRDYW 635



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 170/410 (41%), Gaps = 95/410 (23%)

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQA-ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           S + L + V  H     ++++  + +  L+  Y +  ++D A +VF+ M  KS V WNS+
Sbjct: 19  SFVTLSKYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSI 78

Query: 179 ISGY-EQNGFAKEAIGLF-----------NLM-----RDFGVN-----------PDSTTC 210
           ++ + ++ G  + A  LF           N+M        GV+            D  + 
Sbjct: 79  LAAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASW 138

Query: 211 VCVLAACAQLGDIDLGR-------------W---VHEFIVGQGLDV-----------NVV 243
             +++A AQ+G +   R             W   V  ++    LD            +V+
Sbjct: 139 NTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVI 198

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
             T++I  Y + G V  A  +F  MS   ++ W AMI+GY  +G   + + LF  M   G
Sbjct: 199 TWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETG 258

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           V+PN ++  +VL  C++   +Q G +V   +  +  L         +V ++ + G L +A
Sbjct: 259 VKPNALSLTSVLLGCSNLSALQLGKQVH-QLVCKCPLSSDTTAGTSLVSMYSKCGDLKDA 317

Query: 364 YKFV-----KDVI----------------------------GEKPAPAVWTAMLGACKMH 390
           ++       KDV+                            G KP    + A+L AC   
Sbjct: 318 WELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHA 377

Query: 391 KNFDLGVEVAEHL---LSVEPENPGHYVMLSNIYALAGRM-DRVEVVRNI 436
              DLGV+    +     +E + P HY  + ++   AG++ + V++++++
Sbjct: 378 GLVDLGVQYFNTMRRDFGIETK-PEHYACMVDLLGRAGKLSEAVDLIKSM 426



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P++ +  ++L     L  LQ   QVH  +         +  T L+S+    G +  A  
Sbjct: 260 KPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWE 319

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  IP  D   +N +I   ++      +L  +  M    + P   TF AV+ +C H  +
Sbjct: 320 LFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGL 379

Query: 122 LNLG 125
           ++LG
Sbjct: 380 VDLG 383


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 317/557 (56%), Gaps = 36/557 (6%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCA 117
           A  +F  +  PD   +N++I       +   +L  +  M+  S++ P  +T  +V+ +CA
Sbjct: 230 ALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACA 289

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN---------------------- 155
           +   L LG+ +H H+  +  D    V  AL++ YAKS                       
Sbjct: 290 NRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAF 349

Query: 156 -----------NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
                      ++D AR +FD +  + VVAW +MI GY QNG   +A+ LF LM   G  
Sbjct: 350 TSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPK 409

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P++ T   VL+  + L  +D G+ +H   +      +V +  +LI MY+R G++  AR+I
Sbjct: 410 PNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKI 469

Query: 265 FD-MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           F+ + S  + + WT+MI     HG G EA+ELF +M    ++P+++T+V VLSAC H GL
Sbjct: 470 FNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGL 529

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           V++G   F  M+  + + P   H+ CM+DL GRAGLL EAY F++++  E P    W ++
Sbjct: 530 VEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIE-PDVVAWGSL 588

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           L +C++HK  DL    AE LL ++P N G Y+ L+N  +  G+ +    VR  M  K +K
Sbjct: 589 LSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVK 648

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K  G+S V++  K ++F + D  HP  + IY  + ++    ++ G++P++ S +H+LE+E
Sbjct: 649 KEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQE 708

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
            +E  LR+HSEKLA+AF L+ T    T+RI+KNLR+C DCHSAI++IS+   REIIVRD 
Sbjct: 709 VKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDA 768

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFHHFK GSCSC DYW
Sbjct: 769 TRFHHFKDGSCSCQDYW 785



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 202/434 (46%), Gaps = 70/434 (16%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           +LS    AG +  A+R+F  IP PDS  + T+I+  +       ++  + RM+ S ISP+
Sbjct: 85  ILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPT 144

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN--------- 156
            +TF+ V+ SCA    L++G+ VH  V   G    + V  +L+N YAK  +         
Sbjct: 145 QFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFD 204

Query: 157 ----------------------VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
                                  D+A  +FD+M D  +V+WNS+I+GY   G+   A+  
Sbjct: 205 RMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALET 264

Query: 195 FNLM-RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV------------- 240
           F+ M +   + PD  T   VL+ACA    + LG+ +H  IV   +D+             
Sbjct: 265 FSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYA 324

Query: 241 --------------------NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
                               NV+  TSL++ Y + G++  AR IFD +   +V+AWTAMI
Sbjct: 325 KSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMI 384

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYG 339
            GY  +G  ++A+ LF  M   G +PNN T  AVLS  +    +  G ++ A ++R E  
Sbjct: 385 VGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEE- 443

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
            +  V     ++ ++ R+G + +A K    +   +     WT+M+ +   H   +  +E+
Sbjct: 444 -VSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDT-LTWTSMILSLAQHGLGNEAIEL 501

Query: 400 AEHLLSVEPENPGH 413
            E +L +  + P H
Sbjct: 502 FEKMLRINLK-PDH 514



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 134/256 (52%), Gaps = 35/256 (13%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
            +++ +AK+ N+D AR+VFD +P    V+W +MI GY   G  K A+  F  M   G++P
Sbjct: 84  TILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISP 143

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR--- 262
              T   VLA+CA    +D+G+ VH F+V  G    V +A SL+NMYA+CG+   A+   
Sbjct: 144 TQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVF 203

Query: 263 ----------------------------EIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
                                        +FD M++ ++++W ++I+GY   GY   A+E
Sbjct: 204 DRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALE 263

Query: 295 LFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-RQEYGLLPGVEHHVCMVD 352
            F  M ++  ++P+  T  +VLSACA+   ++ G ++ A + R +  +   V +   ++ 
Sbjct: 264 TFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGN--ALIS 321

Query: 353 LFGRAGLLNEAYKFVK 368
           ++ ++G +  A++ V+
Sbjct: 322 MYAKSGAVEVAHRIVE 337



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 147/306 (48%), Gaps = 20/306 (6%)

Query: 43  LTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI 102
            T LL      G I  A+ IF  +   D   +  +I+  ++    +D+L+ +R MI    
Sbjct: 349 FTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGP 408

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
            P+NYT +AV+   + L+ L+ G+ +H         S + V  AL+  Y++S ++  ARK
Sbjct: 409 KPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARK 468

Query: 163 VFDRMPD-KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           +F+ +   +  + W SMI    Q+G   EAI LF  M    + PD  T V VL+AC  +G
Sbjct: 469 IFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVG 528

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATS-----LINMYARCGNVSKARE-IFDMMSELNVIA 275
            ++ G+     +     +V+ +  TS     +I++  R G + +A   I +M  E +V+A
Sbjct: 529 LVEQGKSYFNLMK----NVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVA 584

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN----VTFVAVLSACAHAGLVQEGHRVF 331
           W +++S   +H Y   A     ++    + PNN    +     LSAC   G  ++  +V 
Sbjct: 585 WGSLLSSCRVHKYVDLAKVAAEKLLL--IDPNNSGAYLALANTLSAC---GKWEDAAKVR 639

Query: 332 ASMRQE 337
            SM+ +
Sbjct: 640 KSMKDK 645



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 41/236 (17%)

Query: 204 NPDSTT--CVCVLAACAQLGDIDLGRWVHEFIVGQGLD-VNVVLATSLINMY-------- 252
           NP S +  CV +L +  +  D  +GR +H  I+  GL  + V L  +L+N+Y        
Sbjct: 7   NPPSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSD 66

Query: 253 -----------------------ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
                                  A+ GN+  AR +FD + + + ++WT MI GY   G  
Sbjct: 67  AHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLF 126

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV--FASMRQEYGLLPGVEHH 347
             AV  F RM + G+ P   TF  VL++CA A  +  G +V  F     + G++P     
Sbjct: 127 KSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVAN-- 184

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
             +++++ + G    A K V D +  K   + W  M+        FDL + + + +
Sbjct: 185 -SLLNMYAKCGDSVMA-KVVFDRMRLKDT-STWNTMISMHMQFCQFDLALALFDQM 237


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/579 (38%), Positives = 340/579 (58%), Gaps = 5/579 (0%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   + +IL A      +   QQ+H+ +   G+  +  + T L+ +      +  A R+
Sbjct: 243 PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRV 302

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSI 121
           F  +P  +   +N++I+     N    ++  ++ ++    + P+  + S+V+ +CA++  
Sbjct: 303 FDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGG 362

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           LN GR VH  V   G     +V  +L++ Y K    D   K+F  + D+ VV WN ++ G
Sbjct: 363 LNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMG 422

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + QN   +EA   F +MR  G+ PD  +   VL + A L  +  G  +H+ I+  G   N
Sbjct: 423 FVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKN 482

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +  SLI MYA+CG++  A ++F+ + + NVI+WTAMIS Y +HG   + +ELF  M +
Sbjct: 483 MCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLS 542

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ P++VTFV VLSAC+H G V+EG   F SM++ + + PG EH+ CMVDL GRAG L+
Sbjct: 543 EGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLD 602

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA +F++  +  KP P+VW A+LGAC+ + N  +G E AE L  +EP NPG+YV+L+N+ 
Sbjct: 603 EAKRFIES-MPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMC 661

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
             +GR++    VR +M   G++K  G S ++V    ++F+  D+SH +++EIY+ L++L 
Sbjct: 662 TRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLE 721

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              ++ GYV E+E   + LEE E E  L YHSEKLALAFGL+       IRI KNLR C 
Sbjct: 722 KLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCG 781

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            CH+ +K  S   +REIIVRD  RFH F  G CSC DYW
Sbjct: 782 HCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 130/504 (25%), Positives = 241/504 (47%), Gaps = 34/504 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS--PDSFLFNTLI 78
           LK   Q+H  +I+  Y     +   L++L    G +  A  +F            + +LI
Sbjct: 158 LKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLI 217

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
              S  N    +L  + +M  S   P+ +TFS+++ + A   ++  G+ +H  +   G+D
Sbjct: 218 THLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFD 277

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NL 197
           +++ V  ALV+ YAK  ++  A +VFD+MP++++V+WNSMI G+  N     A+G+F ++
Sbjct: 278 ANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDV 337

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           +R+  V P+  +   VL+ACA +G ++ GR VH  +V  GL     +  SL++MY +C  
Sbjct: 338 LREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRF 397

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
             +  ++F  + + +V+ W  ++ G+  +    EA   F  MR  G+ P+  +F  VL +
Sbjct: 398 FDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHS 457

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC----MVDLFGRAGLLNEAYKFVKDVIGE 373
            A    + +G  +   +     +  G   ++C    ++ ++ + G L +AY+  + +  E
Sbjct: 458 SASLAALHQGTAIHDQI-----IKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGI--E 510

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVE 431
                 WTAM+ A ++H   +  +E+ EH+LS E   P H   +  + A +  GR++   
Sbjct: 511 DHNVISWTAMISAYQLHGCANQVIELFEHMLS-EGIEPSHVTFVCVLSACSHTGRVEEGL 569

Query: 432 VVRNIM-----IQKGLKKH------VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
              N M     +  G + +      +G +    + K ++ SM  K  P+          L
Sbjct: 570 AHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSV------WGAL 623

Query: 481 MGRCREAGYVPESESAMHELEEEE 504
           +G CR+ G +     A   L E E
Sbjct: 624 LGACRKYGNLKMGREAAERLFEME 647


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/539 (36%), Positives = 311/539 (57%), Gaps = 34/539 (6%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N +I          ++L   RRM+ S I    +T+ +VI++CA+  +L LG+ VH +V 
Sbjct: 254 YNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYV- 312

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY----------- 182
           +   D   H   +LV  Y K    + AR +F++MP K +V+WN+++SGY           
Sbjct: 313 LRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKL 372

Query: 183 --------------------EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
                                +NGF +E + LF+ M+  G  P        + +CA LG 
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
              G+  H  +V  G D ++    +LI MYA+CG V +A+++F  M  L+ ++W A+I+ 
Sbjct: 433 YCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAA 492

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
            G HG+G EAV+++  M   G+RP+ +TF+ VL+AC+HAGLV +G + F SM   Y + P
Sbjct: 493 LGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPP 552

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
           G +H+  ++DL  R+G  +EA   ++  +  KP   +W A+L  C++H N +LG+  A+ 
Sbjct: 553 GADHYARLIDLLCRSGKFSEAESIIES-LPFKPTAEIWEALLSGCRVHGNMELGIIAADK 611

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
           L  + PE+ G Y++LSN+YA  G+ + V  VR +M  +G+KK V  S +E++ + + F +
Sbjct: 612 LFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLV 671

Query: 463 GDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE-EREYSLRYHSEKLALAFG 521
            D SHP    +Y+YL +L    R  GYVP++   +H++E +  +E  L  HSEK+A+AFG
Sbjct: 672 DDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFG 731

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           LM+  PG TIRI KNLR C DCH+  +F+S    R+II+RDR RFHHF+ G CSC ++W
Sbjct: 732 LMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/488 (22%), Positives = 197/488 (40%), Gaps = 111/488 (22%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD---------- 70
           L+  + VH ++I  G+     +L +L+ + C +  + YA+++F  I  PD          
Sbjct: 30  LQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSG 89

Query: 71  -----------------------SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNY 107
                                  + ++N +I   S  N    ++  + +M      P ++
Sbjct: 90  YCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDF 149

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHV--FVSGYDSDLHVQAALVNFYAKSNN----VDVAR 161
           T+++V+   A L + +  + V  H     SG      V  ALV+ Y++  +    +  AR
Sbjct: 150 TYASVLAGLA-LVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSAR 208

Query: 162 KVFDRMPDKS--------------------------------VVAWNSMISGYEQNGFAK 189
           KVFD +P+K                                 +VA+N+MISGY   G  +
Sbjct: 209 KVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQ 268

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           EA+ +   M   G+  D  T   V+ ACA    + LG+ VH +++ +  D +     SL+
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRE-DFSFHFDNSLV 327

Query: 250 NMYARCGNVSKAREIFDM-------------------------------MSELNVIAWTA 278
            +Y +CG  ++AR IF+                                M E N+++W  
Sbjct: 328 TLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMI 387

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           MISG   +G+G E ++LF  M+  G  P +  F   + +CA  G    G +  A + +  
Sbjct: 388 MISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVK-I 446

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA--PAVWTAMLGACKMHKNFDLG 396
           G    +     ++ ++ + G++ EA    + V    P      W A++ A   H +    
Sbjct: 447 GFDSSLSAGNALITMYAKCGVVEEA----QQVFRTMPCLDSVSWNALIAALGQHGHGVEA 502

Query: 397 VEVAEHLL 404
           V+V E +L
Sbjct: 503 VDVYEEML 510



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 2/244 (0%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LLS    +G I  A+ IF  +   +   +  +I   ++  F  + L  +  M      P 
Sbjct: 357 LLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPC 416

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           +Y FS  IKSCA L     G+  H  +   G+DS L    AL+  YAK   V+ A++VF 
Sbjct: 417 DYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFR 476

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP    V+WN++I+   Q+G   EA+ ++  M   G+ PD  T + VL AC+  G +D 
Sbjct: 477 TMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQ 536

Query: 226 GR-WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGY 283
           GR + +       +         LI++  R G  S+A  I + +  +     W A++SG 
Sbjct: 537 GRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGC 596

Query: 284 GMHG 287
            +HG
Sbjct: 597 RVHG 600



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 155/353 (43%), Gaps = 86/353 (24%)

Query: 109 FSAVIKSCAHL--SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR 166
           ++A ++ C  L  + L L RAVH ++   G+    H+   L++ Y KS+ +D AR++FD 
Sbjct: 15  YAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDE 74

Query: 167 M--PDK-------------------------------SVVAWNSMISGYEQNGFAKEAIG 193
           +  PDK                                 V +N+MI+G+  N     AI 
Sbjct: 75  ISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAIN 134

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV--HEFIVGQGLDVNVVLATSLINM 251
           LF  M+  G  PD  T   VLA  A + D D  + V  H   +  G      ++ +L+++
Sbjct: 135 LFCKMKHEGFKPDDFTYASVLAGLALVVD-DEKQCVQFHAAALKSGAGYVTSVSNALVSV 193

Query: 252 YARCGN----VSKAREIFDMMSELNVIAWT------------------------------ 277
           Y+RC +    +  AR++FD + E +  +WT                              
Sbjct: 194 YSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVA 253

Query: 278 --AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM- 334
             AMISGY   G   EA+E+  RM + G+  +  T+ +V+ ACA+A L+Q G +V A + 
Sbjct: 254 YNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVL 313

Query: 335 -RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAML 384
            R+++           +V L+ + G  NEA    + +  + PA  +  W A+L
Sbjct: 314 RREDFSF----HFDNSLVTLYYKCGKFNEA----RAIFEKMPAKDLVSWNALL 358


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/590 (36%), Positives = 340/590 (57%), Gaps = 34/590 (5%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           ++ +HA ++  G          L+S    +  +  A  +F   P  D +++++L+   S 
Sbjct: 104 VRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSH 163

Query: 84  ANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
           +     +L   R M+ ++ + P ++  S+V    A L    LGR +H H  VS Y+ D  
Sbjct: 164 SASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDV 223

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF------N 196
           V+++LV+ Y K  + D  RKVFD M  K+ V W +++SGY  NG ++EA+ LF      N
Sbjct: 224 VKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRN 283

Query: 197 L-------------------------MRDFGVNPDSTTCVC-VLAACAQLGDIDLGRWVH 230
           L                         MR  GV  D    +  V+   A L    LGR +H
Sbjct: 284 LFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLH 343

Query: 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
              +  G   N+++  +LI+MY++C ++  ARE+F+ ++  +VI+WT M+ G   HG   
Sbjct: 344 GSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAE 403

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350
           EA+ L+ RM   G +PN VTFV ++ AC+HAGLVQ+G ++F SM+ EYG+ P ++H+ C 
Sbjct: 404 EALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCY 463

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410
           +DL  R+G L EA + +  +  E P  A W A+L AC  +K+ ++ + +++ LL + P++
Sbjct: 464 LDLLSRSGHLLEAEELMTTMPYE-PDEATWGALLSACTKYKDAEMCIRISDKLLELRPKD 522

Query: 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNT 470
              Y++LSN+YA+ G+ D V  VR  MI   ++K  GYS +E  ++  LF  G+      
Sbjct: 523 SSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVR 582

Query: 471 NEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT 530
            EI  +L+E++   R+ GYVP++ S MH+LEE E+E+ L  HSE+LA+AFGL+++ PG  
Sbjct: 583 EEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSV 642

Query: 531 IRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           IR+VKNLR+CVDCH+ +K IS  T+R+I+VRD  RFHHF+ G CSC ++W
Sbjct: 643 IRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/556 (36%), Positives = 335/556 (60%), Gaps = 10/556 (1%)

Query: 27   VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
            VHA +IVAG+     +   L+++    G +  A+++   +P PD   +N LI  +++   
Sbjct: 521  VHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEE 580

Query: 87   STDSLLFYRRMIVSNISPSNY-TFSAVIKSC-AHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
              +++  Y+ +    I P+NY T  +V+ +C A   +L  G  +H H+ ++G++SD +V+
Sbjct: 581  PNEAVKAYKLIREKGI-PANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVK 639

Query: 145  AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             +L+  YAK  +++ +  +FD + +KS + WN+M++    +G  +EA+ +F  MR+ GVN
Sbjct: 640  NSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVN 699

Query: 205  PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
             D  +    LAA A L  ++ G+ +H  ++  G + ++ +  + ++MY +CG +    ++
Sbjct: 700  LDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKM 759

Query: 265  FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
                   + ++W  +IS +  HG   +A E FH M   G +P++VTFV++LSAC H GLV
Sbjct: 760  LPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLV 819

Query: 325  QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA---VWT 381
             EG   + SM +E+G+ PG+EH VC++DL GR+G L+ A  F+K    E P P     W 
Sbjct: 820  DEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIK----EMPVPPNDLAWR 875

Query: 382  AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
            ++L AC++H N +L  + AEHLL ++P +   YV+ SN+ A +G+ + VE +R  M    
Sbjct: 876  SLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNN 935

Query: 442  LKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE 501
            +KK    S V++  K + F MG+K HP  + I   L ELM   +EAGYVP++  A+H+++
Sbjct: 936  IKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMD 995

Query: 502  EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
            EE++EY+L  HSE+LALAFGL+ T    T+RI KNLR+C DCHS  KF+S    R+I++R
Sbjct: 996  EEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLR 1055

Query: 562  DRLRFHHFKRGSCSCL 577
            D  RFHHF  G CSC+
Sbjct: 1056 DPYRFHHFSGGKCSCV 1071



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 194/403 (48%), Gaps = 5/403 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  + +H  ++  G   +  +   LL+L  +AG    A+ +F  +   D   +N+++  
Sbjct: 414 LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 473

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
             +     D L     ++      ++ TF++ + +C++   L   + VH  + V+G+   
Sbjct: 474 YVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDF 533

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           L V  ALV  Y K   +  A+KV   MP    V WN++I G+ +N    EA+  + L+R+
Sbjct: 534 LIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIRE 593

Query: 201 FGVNPDSTTCVCVLAACAQLGD-IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
            G+  +  T V VL AC+   D +  G  +H  IV  G + +  +  SLI MYA+CG+++
Sbjct: 594 KGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLN 653

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            +  IFD +   + I W AM++    HG G EA+++F  MR  GV  +  +F   L+A A
Sbjct: 654 SSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATA 713

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           +  +++EG ++   +  + G    +      +D++G+ G +++  K +   I    +   
Sbjct: 714 NLAVLEEGQQLHG-LVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINR--SRLS 770

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           W  ++ A   H  F    E    +L + P+ P H   +S + A
Sbjct: 771 WNILISAFARHGCFQKARETFHEMLKLGPK-PDHVTFVSLLSA 812



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/443 (25%), Positives = 218/443 (49%), Gaps = 20/443 (4%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           QVH  ++  G      + T L+      G +  AQ++F  +P  +   + +L++  S + 
Sbjct: 217 QVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSG 276

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
              + L  Y+RM    +S +  TF+ V  SC  L    LG  V  H+   G++  + V  
Sbjct: 277 NPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVAN 336

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           +L++ ++  ++V+ A  VFD M +  +++WN+MIS Y  +G  +E++  F+ MR      
Sbjct: 337 SLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNET 396

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           +STT   +L+ C+ + ++  GR +H  +V  GLD NV +  +L+ +Y+  G    A  +F
Sbjct: 397 NSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVF 456

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
             M+E ++I+W +M++ Y   G   + +++   +   G   N+VTF + L+AC++   + 
Sbjct: 457 QAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLI 516

Query: 326 EGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
           E   V A +     ++ G    +     +V ++G+ G++ EA K ++ +   +P    W 
Sbjct: 517 ESKIVHALI-----IVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTM--PQPDRVTWN 569

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
           A++G     +N +    V  + L  E   P +Y+ + ++       D  +++++ M    
Sbjct: 570 ALIGG--HAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPD--DLLKHGM---P 622

Query: 442 LKKHVGYSTVEVDQ--KNYLFSM 462
           +  H+  +  E D   KN L +M
Sbjct: 623 IHAHIVLTGFESDDYVKNSLITM 645



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 145/270 (53%), Gaps = 10/270 (3%)

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G+A+H    V   +  +     L+N Y+K  N++ AR VFD M  ++  +W++M+SGY +
Sbjct: 113 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 172

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI-DLGRWVHEFIVGQGLDVNVV 243
            G  +EA+GLF  M   GV P+      ++ AC++ G + D G  VH F+V  G+  +V 
Sbjct: 173 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 232

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           + T+L++ Y   G V  A+++F+ M + NV++WT+++ GY   G   E + ++ RMR  G
Sbjct: 233 VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 292

Query: 304 VRPNNVTFVAVLSACAHAGLVQE---GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
           V  N  TF  V S+C   GL+++   G++V   + Q YG    V     ++ +F     +
Sbjct: 293 VSGNQNTFATVTSSC---GLLEDQVLGYQVLGHIIQ-YGFEDSVSVANSLISMFSSFSSV 348

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
            EA  +V D + E    + W AM+ A   H
Sbjct: 349 EEAC-YVFDHMNECDIIS-WNAMISAYAHH 376



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 149/287 (51%), Gaps = 1/287 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + +HA  IV            L+++    G I +A+ +F  +   +   ++T++    + 
Sbjct: 114 KALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRV 173

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL-NLGRAVHCHVFVSGYDSDLHV 143
               +++  + +M    + P+ +  +++I +C+    + + G  VH  V  +G   D++V
Sbjct: 174 GLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYV 233

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             ALV+FY     V  A+K+F+ MPD +VV+W S++ GY  +G   E + ++  MR  GV
Sbjct: 234 GTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGV 293

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           + +  T   V ++C  L D  LG  V   I+  G + +V +A SLI+M++   +V +A  
Sbjct: 294 SGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACY 353

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           +FD M+E ++I+W AMIS Y  HG   E++  FH MR      N+ T
Sbjct: 354 VFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTT 400



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 157/328 (47%), Gaps = 21/328 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK    +HAH+++ G+     +   L+++    G +  +  IF  + +     +N ++  
Sbjct: 617 LKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAA 676

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
           N+      ++L  +  M    ++   ++FS  + + A+L++L  G+ +H  V   G++SD
Sbjct: 677 NAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESD 736

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           LHV  A ++ Y K   +    K+  +  ++S ++WN +IS + ++G  ++A   F+ M  
Sbjct: 737 LHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLK 796

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLG-----RWVHEFIVGQGLDVNVVLATSLINMYARC 255
            G  PD  T V +L+AC   G +D G         EF V  G++  V     +I++  R 
Sbjct: 797 LGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVC----IIDLLGRS 852

Query: 256 GNVSKARE-IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR---PNNVTF 311
           G +S A   I +M    N +AW ++++   +HG     +EL  +   H +     ++  +
Sbjct: 853 GRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHG----NLELARKTAEHLLELDPSDDSAY 908

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYG 339
           V   + CA +G  ++      ++R+E G
Sbjct: 909 VLYSNVCATSGKWED----VENLRKEMG 932


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/580 (35%), Positives = 337/580 (58%), Gaps = 6/580 (1%)

Query: 5   QPHSPAYEAILKAGPRLKP----LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           +P      ++LKA   L       +QVH H I         + T L+        +  A+
Sbjct: 413 KPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAE 472

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
            I F   + D   +N ++   ++++    +L  +  M        ++T + V K+C  L 
Sbjct: 473 -ILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLF 531

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            +N G+ VH +   SGYD DL V + +++ Y K  ++  A+  FD +P    VAW +MIS
Sbjct: 532 AINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMIS 591

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           G  +NG  + A  +F+ MR  GV PD  T   +  A + L  ++ GR +H   +      
Sbjct: 592 GCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTN 651

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +  + TSL++MYA+CG++  A  +F  +  +N+ AW AM+ G   HG G E ++LF +M+
Sbjct: 652 DPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMK 711

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
           + G++P+ VTF+ VLSAC+H+GLV E ++   SM  +YG+ P +EH+ C+ D  GRAGL+
Sbjct: 712 SLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLV 771

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
            +A   ++ +  E  A +++  +L AC++  + + G  VA  LL +EP +   YV+LSN+
Sbjct: 772 KQAENLIESMSMEASA-SMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNM 830

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA A + D +++ R +M    +KK  G+S +EV  K ++F + D+S+  T  IY+ + ++
Sbjct: 831 YAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDM 890

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
           +   ++ GYVPE++  + ++EEEE+E +L YHSEKLA+AFGL+ T P   IR++KNLR+C
Sbjct: 891 IRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVC 950

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH+A+K+I+   NREI++RD  RFH FK G CSC DYW
Sbjct: 951 GDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 228/482 (47%), Gaps = 35/482 (7%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           QQVH   +  G     ++   L+++ C      +A+ +F  +   D   +N++I   ++ 
Sbjct: 335 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQN 394

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL-SILNLGRAVHCHVFVSGYDSDLHV 143
               +++  + +++   + P  YT ++V+K+ + L   L+L + VH H       SD  V
Sbjct: 395 GLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFV 454

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             AL++ Y+++  +  A  +F+R  +  +VAWN+M++GY Q+    + + LF LM   G 
Sbjct: 455 STALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGE 513

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
             D  T   V   C  L  I+ G+ VH + +  G D+++ +++ +++MY +CG++S A+ 
Sbjct: 514 RSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQF 573

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
            FD +   + +AWT MISG   +G    A  +F +MR  GV P+  T   +  A +    
Sbjct: 574 AFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTA 633

Query: 324 VQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           +++G ++ A +++      P V     +VD++ + G +++AY   K +  E      W A
Sbjct: 634 LEQGRQIHANALKLNCTNDPFV--GTSLVDMYAKCGSIDDAYCLFKRI--EMMNITAWNA 689

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           ML            V +A+H      E      +   + +L  + D+V  +       G+
Sbjct: 690 ML------------VGLAQH-----GEGKETLQLFKQMKSLGIKPDKVTFI-------GV 725

Query: 443 KKHVGYSTVEVDQKNYLFSM-GDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE 501
                +S +  +   ++ SM GD       E Y  L + +GR   AG V ++E+ +  + 
Sbjct: 726 LSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGR---AGLVKQAENLIESMS 782

Query: 502 EE 503
            E
Sbjct: 783 ME 784



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 148/296 (50%), Gaps = 7/296 (2%)

Query: 94  YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153
           +  M+ S++     TF  ++ +   +  L LG+ VHC     G D  L V  +L+N Y K
Sbjct: 303 FADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCK 362

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
                 AR VFD M ++ +++WNS+I+G  QNG   EA+ LF  +   G+ PD  T   V
Sbjct: 363 LRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSV 422

Query: 214 LAACAQLGD-IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
           L A + L + + L + VH   +      +  ++T+LI+ Y+R   + +A  +F+  +  +
Sbjct: 423 LKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHN-FD 481

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           ++AW AM++GY     G + ++LF  M   G R ++ T   V   C     + +G +V A
Sbjct: 482 LVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHA 541

Query: 333 -SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
            +++  Y L   V   +  +D++ + G ++ A +F  D I   P    WT M+  C
Sbjct: 542 YAIKSGYDLDLWVSSGI--LDMYVKCGDMSAA-QFAFDSI-PVPDDVAWTTMISGC 593



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 100/197 (50%), Gaps = 5/197 (2%)

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
           S L LG+  H  +     + +  +   L++ Y+K  ++  AR+VFD+MPD+ +V+WNS++
Sbjct: 53  SDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSIL 112

Query: 180 SGYEQNGFA-----KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           + Y Q+        ++A  LF ++R   V     T   +L  C   G +      H +  
Sbjct: 113 AAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYAC 172

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             GLD +  +A +L+N+Y + G V + + +F+ M   +V+ W  M+  Y   G+  EA++
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 232

Query: 295 LFHRMRAHGVRPNNVTF 311
           L     + G+ PN +T 
Sbjct: 233 LSSAFHSSGLNPNEITL 249



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 5/188 (2%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
            HA ++       R ++  L+S+    G +TYA+R+F  +P  D   +N+++   ++++ 
Sbjct: 61  THARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSE 120

Query: 87  ST-----DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
                   + L +R +    +  S  T S ++K C H   +    + H +    G D D 
Sbjct: 121 CVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDE 180

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V  ALVN Y K   V   + +F+ MP + VV WN M+  Y + GF +EAI L +     
Sbjct: 181 FVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSS 240

Query: 202 GVNPDSTT 209
           G+NP+  T
Sbjct: 241 GLNPNEIT 248



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 123/274 (44%), Gaps = 32/274 (11%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           L+++    G +   + +F  +P  D  L+N ++    +  F  +++        S ++P+
Sbjct: 186 LVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPN 245

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
             T   + +                   +SG DSD    A  V  +A  N+     ++  
Sbjct: 246 EITLRLLAR-------------------ISGDDSD----AGQVKSFANGNDASSVSEIIF 282

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           R         N  +S Y  +G     +  F  M +  V  D  T + +LA   ++  + L
Sbjct: 283 R---------NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLAL 333

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ VH   +  GLD+ + ++ SLINMY +      AR +FD MSE ++I+W ++I+G   
Sbjct: 334 GQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQ 393

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           +G   EAV LF ++   G++P+  T  +VL A +
Sbjct: 394 NGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/578 (36%), Positives = 323/578 (55%), Gaps = 36/578 (6%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           RS S    ++SL    G +  A+ +F  +P      +N +I   ++      +L  + RM
Sbjct: 228 RSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRM 287

Query: 98  I-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           +  S+++P  +T ++V+ +CA+L  + +G+ VH ++  +    +  V  AL++ YAKS +
Sbjct: 288 LHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGS 347

Query: 157 VDVARKVFDR---------------------------------MPDKSVVAWNSMISGYE 183
           V+ AR++ D+                                 M ++ VVAW +MI GYE
Sbjct: 348 VENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYE 407

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG   EAI LF  M   G  P+S T   VL+ CA L  +D G+ +H   +   L+ +  
Sbjct: 408 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSS 467

Query: 244 LATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           ++ ++I MYAR G+   AR +FD +      I WT+MI     HG G EAV LF  M   
Sbjct: 468 VSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRA 527

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV P+ +T+V VLSAC+HAG V EG R +  ++ E+ + P + H+ CMVDL  RAGL +E
Sbjct: 528 GVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSE 587

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A +F++ +  E P    W ++L AC++HKN +L    AE LLS++P N G Y  ++N+Y+
Sbjct: 588 AQEFIRRMPVE-PDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYS 646

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             GR      +     +K ++K  G+S   +  K ++F   D  HP  + +Y     +  
Sbjct: 647 ACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWE 706

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             + AG+VP+ +S +H++++E +E  L  HSEKLA+AFGL+ T    T+R++KNLR+C D
Sbjct: 707 EIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCND 766

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+AIK IS  T+REIIVRD  RFHHF+ G CSC DYW
Sbjct: 767 CHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 204/441 (46%), Gaps = 71/441 (16%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LLS+   +G +  A+ +F  +P  D+  +  +++  ++A    +++     M     +P+
Sbjct: 104 LLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPT 163

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            +T + V+ SCA      +GR VH  V   G  S + V  +++N Y K  + + A  VF+
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFE 223

Query: 166 RMPDKSV-------------------------------VAWNSMISGYEQNGFAKEAIGL 194
           RMP +SV                               V+WN+MI+GY QNG   +A+ L
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKL 283

Query: 195 FN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL--------------- 238
           F+ ++ +  + PD  T   VL+ACA LG++ +G+ VH +I+   +               
Sbjct: 284 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 343

Query: 239 ------------------DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
                             D+NV+  T+L+  Y + G++  ARE+F +M+  +V+AWTAMI
Sbjct: 344 KSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMI 403

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYG 339
            GY  +G   EA++LF  M   G  PN+ T  AVLS CA    +  G ++   ++R    
Sbjct: 404 VGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLE 463

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
               V + +  + ++ R+G    A +    V   K     WT+M+ A   H   +  V +
Sbjct: 464 RSSSVSNAI--ITMYARSGSFPWARRMFDQVCWRKET-ITWTSMIVALAQHGQGEEAVGL 520

Query: 400 AEHLL--SVEPENPGHYVMLS 418
            E +L   VEP+   +  +LS
Sbjct: 521 FEEMLRAGVEPDRITYVGVLS 541



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 128/272 (47%), Gaps = 35/272 (12%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           +L++ +AKS  +  AR VF  MP++  V+W  M+ G  + G   EAI     M   G  P
Sbjct: 103 SLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTP 162

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
              T   VL++CA      +GR VH F+V  GL   V +A S++NMY +CG+   A  +F
Sbjct: 163 TQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVF 222

Query: 266 DMMS-----------ELN--------------------VIAWTAMISGYGMHGYGTEAVE 294
           + M             LN                    +++W AMI+GY  +G   +A++
Sbjct: 223 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALK 282

Query: 295 LFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEHHVCMVD 352
           LF RM     + P+  T  +VLSACA+ G V+ G +V A  +R E      V +   ++ 
Sbjct: 283 LFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALIS 340

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            + ++G +  A + +   +        +TA+L
Sbjct: 341 TYAKSGSVENARRIMDQSMETDLNVISFTALL 372



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 17/173 (9%)

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           NV    SL++M+A+ G ++ AR +F  M E + ++WT M+ G    G   EA++    M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 301 AHGVRPNNVTFVAVLSACA--HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           A G  P   T   VLS+CA   AG V  G +V  S   + GL   V     +++++G+ G
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAV--GRKVH-SFVVKLGLGSCVPVANSVLNMYGKCG 213

Query: 359 LLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLG-VEVAEHLLSVEP 408
               A      V    P  +V  W AM+       N  LG +++AE L    P
Sbjct: 214 DAETA----STVFERMPVRSVSSWNAMVSL-----NTHLGRMDLAESLFESMP 257



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/183 (19%), Positives = 87/183 (47%), Gaps = 6/183 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+S    A+L     L  L   +Q+H   I +   RS S+   ++++   +G   +A+R
Sbjct: 428 EPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARR 487

Query: 62  IFFCIP-SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           +F  +    ++  + ++I+  ++     +++  +  M+ + + P   T+  V+ +C+H  
Sbjct: 488 MFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAG 547

Query: 121 ILNLGRAVHCHVFVS-GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSM 178
            +N G+  +  +        ++   A +V+  A++     A++   RMP +   +AW S+
Sbjct: 548 FVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSL 607

Query: 179 ISG 181
           +S 
Sbjct: 608 LSA 610


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/539 (37%), Positives = 318/539 (58%), Gaps = 4/539 (0%)

Query: 43  LTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI 102
           +T ++   C  G +  ++ +F  +   D   +N +I   +      D+   + RM     
Sbjct: 118 VTAMIGAYC--GSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGH 175

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
           +P  YTFS+++ +CA    L  GR +H  +   G+D D  +Q  L++ Y +  +++ AR+
Sbjct: 176 TPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARR 235

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
            F  +  K + AWN+M++ Y Q    K+A+ L+  M   G  PD  T   V+ +CA LG 
Sbjct: 236 YFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGA 295

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           +  G+++HE     G + +V+L T+L+NMYA+CG+++ A++ FD +S  +V++W+AMI+ 
Sbjct: 296 LREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAA 355

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
              HG+  EA+EL H M   G+  N VT  +VL AC+H G + EG   F  + Q++G+  
Sbjct: 356 SAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIER 415

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
             E+ V  +DL GRAG L EA + V   +  K +      +LG CK+H +   G    + 
Sbjct: 416 DEENTVGFIDLLGRAGWLKEA-EHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKAFTKR 474

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
           ++++EPENPG YV+L+N+YA AGR D V  +R  M +KG+K+  G S++E   K Y FS+
Sbjct: 475 IVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSV 534

Query: 463 GDKSHPNTNEIYQYLDELMGRCR-EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
           GD S+P   EI   L+ L  R + E GYVP++    H++ ++++E  L++HSEK+A+ FG
Sbjct: 535 GDTSNPRNLEIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFG 594

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           L+ + PG T+RI+KNLR+C DCH+  K  S  T R IIVRD  RFHHF+ G CSC DYW
Sbjct: 595 LITSPPGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 653



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/477 (26%), Positives = 220/477 (46%), Gaps = 69/477 (14%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+++F  I   ++F ++ L+    +     ++L  Y+ M+   IS   YT S+V+ +C  
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTK 60

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--------- 169
           L  +  GR V       G++ D+ V  +L++ +AK   ++ A  VF  M           
Sbjct: 61  LLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTA 120

Query: 170 ---------------------KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
                                K VV+WN+MI+ Y   G  K+A  LF+ M   G  PD  
Sbjct: 121 MIGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIY 180

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           T   +L ACA    ++ GR +H  I  +G D +  +  +LI+MY RCG++  AR  F  +
Sbjct: 181 TFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSI 240

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG- 327
            +  + AW  M++ Y     G +A+ L+  M   G  P+  TF +V+ +CA  G ++EG 
Sbjct: 241 EKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGK 300

Query: 328 --HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
             H    S   E  ++ G      +V+++ + G L +A K   D I  K   + W+AM+ 
Sbjct: 301 FIHECSTSCGFEKDVILG----TALVNMYAKCGSLADAKKSF-DGISNKDVVS-WSAMIA 354

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVEVVRNIMIQKGLK 443
           A   H + +  +E++ HL++++          S ++A +  GR+   E +   M   GL 
Sbjct: 355 ASAQHGHAEEALELS-HLMNLQGIAQNEVTASSVLHACSHGGRL--YEGIDYFM---GLS 408

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
           +  G   +E D++N +                ++D L+GR   AG++ E+E  +H +
Sbjct: 409 QDFG---IERDEENTV---------------GFID-LLGR---AGWLKEAEHVLHTM 443



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 150/292 (51%), Gaps = 14/292 (4%)

Query: 7   HSP---AYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           H+P    + +IL A     RL+  + +H  +   G+ R  +M   L+S+    G +  A+
Sbjct: 175 HTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESAR 234

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           R F+ I   +   +NT++   ++ +   D+L  Y+ M++   +P  +TFS+V+ SCA L 
Sbjct: 235 RYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLG 294

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L  G+ +H      G++ D+ +  ALVN YAK  ++  A+K FD + +K VV+W++MI+
Sbjct: 295 ALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIA 354

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
              Q+G A+EA+ L +LM   G+  +  T   VL AC+  G +  G    ++ +G   D 
Sbjct: 355 ASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEG---IDYFMGLSQDF 411

Query: 241 NVVL----ATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHG 287
            +          I++  R G + +A  +   M  +++ +A   ++ G  +HG
Sbjct: 412 GIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHG 463


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/590 (36%), Positives = 340/590 (57%), Gaps = 34/590 (5%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           ++ +HA ++  G          L+S    +  +  A  +F   P  D +++++L+   S 
Sbjct: 22  VRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSH 81

Query: 84  ANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
           +     +L   R M+ ++ + P ++  S+V    A L    LGR +H H  VS Y+ D  
Sbjct: 82  SASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDV 141

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF------N 196
           V+++LV+ Y K  + D  RKVFD M  K+ V W +++SGY  NG ++EA+ LF      N
Sbjct: 142 VKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRN 201

Query: 197 L-------------------------MRDFGVNPDSTTCVC-VLAACAQLGDIDLGRWVH 230
           L                         MR  GV  D    +  V+   A L    LGR +H
Sbjct: 202 LFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLH 261

Query: 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
              +  G   N+++  +LI+MY++C ++  ARE+F+ ++  +VI+WT M+ G   HG   
Sbjct: 262 GSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAE 321

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350
           EA+ L+ RM   G +PN VTFV ++ AC+HAGLVQ+G ++F SM+ EYG+ P ++H+ C 
Sbjct: 322 EALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCY 381

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410
           +DL  R+G L EA + +  +  E P  A W A+L AC  +K+ ++ + +++ LL + P++
Sbjct: 382 LDLLSRSGHLLEAEELMTTMPYE-PDEATWGALLSACTKYKDAEMCIRISDKLLELRPKD 440

Query: 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNT 470
              Y++LSN+YA+ G+ D V  VR  MI   ++K  GYS +E  ++  LF  G+      
Sbjct: 441 SSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVR 500

Query: 471 NEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT 530
            EI  +L+E++   R+ GYVP++ S MH+LEE E+E+ L  HSE+LA+AFGL+++ PG  
Sbjct: 501 EEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSV 560

Query: 531 IRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           IR+VKNLR+CVDCH+ +K IS  T+R+I+VRD  RFHHF+ G CSC ++W
Sbjct: 561 IRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/579 (38%), Positives = 340/579 (58%), Gaps = 5/579 (0%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   + +IL A      +   QQ+H+ +   G+  +  + T L+ +      +  A R+
Sbjct: 8   PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRV 67

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSI 121
           F  +P  +   +N++I+     N    ++  ++ ++    + P+  + S+V+ +CA++  
Sbjct: 68  FDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGG 127

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           LN GR VH  V   G     +V  +L++ Y K    D   K+F  + D+ VV WN ++ G
Sbjct: 128 LNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMG 187

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + QN   +EA   F +MR  G+ PD  +   VL + A L  +  G  +H+ I+  G   N
Sbjct: 188 FVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKN 247

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +  SLI MYA+CG++  A ++F+ + + NVI+WTAMIS Y +HG   + +ELF  M +
Sbjct: 248 MCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLS 307

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ P++VTFV VLSAC+H G V+EG   F SM++ + + PG EH+ CMVDL GRAG L+
Sbjct: 308 EGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLD 367

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA +F++  +  KP P+VW A+LGAC+ + N  +G E AE L  +EP NPG+YV+L+N+ 
Sbjct: 368 EAKRFIES-MPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMC 426

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
             +GR++    VR +M   G++K  G S ++V    ++F+  D+SH +++EIY+ L++L 
Sbjct: 427 TRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLE 486

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
              ++ GYV E+E   + LEE E E  L YHSEKLALAFGL+       IRI KNLR C 
Sbjct: 487 KLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCG 546

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            CH+ +K  S   +REIIVRD  RFH F  G CSC DYW
Sbjct: 547 HCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 99/188 (52%), Gaps = 4/188 (2%)

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           MR  G  P+  T   +L+A A    +  G+ +H  I   G D N+ + T+L++MYA+C +
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR-MRAHGVRPNNVTFVAVLS 316
           +  A  +FD M E N+++W +MI G+  +     AV +F   +R   V PN V+  +VLS
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           ACA+ G +  G +V   + + +GL+P       ++D++ +    +E  K  +  +G++  
Sbjct: 121 ACANMGGLNFGRQVHGVVVK-FGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQ-CVGDRDV 178

Query: 377 PAVWTAML 384
              W  ++
Sbjct: 179 -VTWNVLV 185


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/569 (36%), Positives = 322/569 (56%), Gaps = 35/569 (6%)

Query: 46  LLSLVCDAGFITYAQRIFFCIP--SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           +++L    G +  A+RIF  +     D   ++ ++    +     ++L+ +  M  S ++
Sbjct: 208 MIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVA 267

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
                  + + +C+ +  + +GR VH      G +  + ++ AL++ Y+    +  AR++
Sbjct: 268 VDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRI 327

Query: 164 FD--------------------------------RMPDKSVVAWNSMISGYEQNGFAKEA 191
           FD                                 MP+K VV+W++MISGY Q+    EA
Sbjct: 328 FDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEA 387

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           + LF  M+  GV PD T  V  ++AC  L  +DLG+W+H +I    L VNV+L+T+LI+M
Sbjct: 388 LALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDM 447

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           Y +CG V  A E+F  M E  V  W A+I G  M+G   +++ +F  M+  G  PN +TF
Sbjct: 448 YMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITF 507

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           + VL AC H GLV +G   F SM  E+ +   ++H+ CMVDL GRAGLL EA + + D +
Sbjct: 508 MGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELI-DSM 566

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
              P  A W A+LGAC+ H++ ++G  +   L+ ++P++ G +V+LSNIYA  G    V 
Sbjct: 567 PMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVL 626

Query: 432 VVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVP 491
            +R IM Q G+ K  G S +E +   + F  GDK+HP  N+I   LD +  + +  GYVP
Sbjct: 627 EIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVP 686

Query: 492 ESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFIS 551
            +     +++EEE+E +L  HSEKLA+AFGL+  SP   IR+ KNLR+C DCH+ +K IS
Sbjct: 687 TTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPPTPIRVTKNLRICNDCHTVVKLIS 746

Query: 552 VATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            A +R+I+VRDR RFHHFK G+CSC+D+W
Sbjct: 747 KAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 114/438 (26%), Positives = 198/438 (45%), Gaps = 108/438 (24%)

Query: 58  YAQRIFFCIPSPDSFLFNTLI-----IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAV 112
           Y+ RIF  + +P++F +NT++     ++NS       +LL Y+  + S+  P +YT+  +
Sbjct: 56  YSLRIFNHLRNPNTFTWNTIMRAHLYLQNSPHQ----ALLHYKLFLASHAKPDSYTYPIL 111

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYA-------------------- 152
           ++ CA       GR +H H   SG+D D++V+  L+N YA                    
Sbjct: 112 LQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDL 171

Query: 153 -----------KSNNVDVARKVFDRMPDKSVVA--------------------------- 174
                      ++  V+ A +VF+ MP+++ +A                           
Sbjct: 172 VSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGR 231

Query: 175 ------WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
                 W++M+S YEQN   +EA+ LF  M+  GV  D    V  L+AC+++ ++++GRW
Sbjct: 232 ERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRW 291

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD---------------------- 266
           VH   V  G++  V L  +LI++Y+ CG +  AR IFD                      
Sbjct: 292 VHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCG 351

Query: 267 ----------MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
                      M E +V++W+AMISGY  H   +EA+ LF  M+ HGVRP+    V+ +S
Sbjct: 352 SIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAIS 411

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC H   +  G  + A + +   L   V     ++D++ + G +  A +    +  E+  
Sbjct: 412 ACTHLATLDLGKWIHAYISRN-KLQVNVILSTTLIDMYMKCGCVENALEVFYAM--EEKG 468

Query: 377 PAVWTAMLGACKMHKNFD 394
            + W A++    M+ + +
Sbjct: 469 VSTWNAVILGLAMNGSVE 486


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/582 (37%), Positives = 336/582 (57%), Gaps = 9/582 (1%)

Query: 6   PHSPAYEAILKAGPRLK-PL--QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   +  + KA   L  P+  +Q+HA  +  G      +      +    G    A+ +
Sbjct: 107 PNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNM 166

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P  +   +N  +    +     D++  +++ +  +  P+  TF A + +CA +  L
Sbjct: 167 FDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSL 226

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--KSVVAWNSMIS 180
            LGR +H  +  S Y  D+ V   L++FY K  ++  +  VF R+    ++VV+W S+++
Sbjct: 227 ELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLA 286

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
              QN   + A  +F   R   V P       VL+ACA+LG ++LGR VH   +   ++ 
Sbjct: 287 ALVQNHEEERACMVFLQARK-EVEPTDFMISSVLSACAELGGLELGRSVHALALKACVEE 345

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           N+ + ++L+++Y +CG++  A ++F  M E N++ W AMI GY   G    A+ LF  M 
Sbjct: 346 NIFVGSALVDLYGKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMT 405

Query: 301 AH--GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           +   G+  + VT V+VLSAC+ AG V+ G ++F SMR  YG+ PG EH+ C+VDL GR+G
Sbjct: 406 SGSCGIALSYVTLVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSG 465

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           L++ AY+F+K  +   P  +VW A+LGACKMH    LG   AE L  ++P++ G++V+ S
Sbjct: 466 LVDRAYEFIKR-MPILPTISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFS 524

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           N+ A AGR +   +VR  M   G+KK+VGYS V V  + ++F   D  H   +EI   L 
Sbjct: 525 NMLASAGRWEEATIVRKEMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLA 584

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           +L G  ++AGYVP++  ++ +LEEEE+   + YHSEK+ALAFGL+    G+ IRI KNLR
Sbjct: 585 KLRGEMKKAGYVPDANLSLFDLEEEEKASEVWYHSEKIALAFGLITLPRGVPIRITKNLR 644

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C+DCHSAIKFIS    REIIVRD  RFH FK G CSC DYW
Sbjct: 645 ICIDCHSAIKFISKIVGREIIVRDNNRFHRFKDGWCSCKDYW 686



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 199/439 (45%), Gaps = 35/439 (7%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ-------RIFFCIPSPDSFLFNTL 77
           + VHAH++       R+  T L S +C+     Y++       ++   + +P + +  T 
Sbjct: 27  RAVHAHIL-------RTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTS 79

Query: 78  IIRNSKANFS-TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
           +I     N   T +LL +  M    + P+++TF  V K+ A L +   G+ +H      G
Sbjct: 80  LISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGG 139

Query: 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN 196
              D+ V  +  + Y+K+     AR +FD MP +++  WN+ +S   Q+G   +AI  F 
Sbjct: 140 NILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFK 199

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
                   P++ T    L ACA +  ++LGR +H FIV      +V +   LI+ Y +CG
Sbjct: 200 KFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCG 259

Query: 257 NVSKAREIFDMM--SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           ++  +  +F  +     NV++W ++++    +     A  +F + R   V P +    +V
Sbjct: 260 DIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARKE-VEPTDFMISSV 318

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDV 370
           LSACA  G ++ G  V A       L   VE ++     +VDL+G+ G    + ++ + V
Sbjct: 319 LSACAELGGLELGRSVHA-----LALKACVEENIFVGSALVDLYGKCG----SIEYAEQV 369

Query: 371 IGEKPAP--AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
             E P      W AM+G      + D+ + + + + S        YV L ++ +   R  
Sbjct: 370 FREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAG 429

Query: 429 RVEVVRNIMIQKGLKKHVG 447
            VE  R + I + ++   G
Sbjct: 430 AVE--RGLQIFESMRGRYG 446



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 145/321 (45%), Gaps = 19/321 (5%)

Query: 124 LGRAVHCHVFVSGYDSDL--HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           LGRAVH H+  + +D+ L   +   LVN Y+K +  + A+ V      ++VV W S+ISG
Sbjct: 25  LGRAVHAHILRT-HDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISG 83

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
              N     A+  F+ MR   V P+  T  CV  A A L     G+ +H   +  G  ++
Sbjct: 84  CVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILD 143

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V +  S  +MY++ G   +AR +FD M   N+  W A +S     G   +A+  F +   
Sbjct: 144 VFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLC 203

Query: 302 HGVRPNNVTFVAVLSACA-----HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
               PN +TF A L+ACA       G    G  V +  R++  +  G      ++D +G+
Sbjct: 204 VDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNG------LIDFYGK 257

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGA-CKMHKNFDLGVEVAEHLLSVEPENPGHYV 415
            G +  +      +   +     W ++L A  + H+     +   +    VEP +     
Sbjct: 258 CGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARKEVEPTD----F 313

Query: 416 MLSNIYALAGRMDRVEVVRNI 436
           M+S++ +    +  +E+ R++
Sbjct: 314 MISSVLSACAELGGLELGRSV 334


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 326/527 (61%), Gaps = 14/527 (2%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLL-FYRRMIVSNISPSNYTFSAVIK 114
           + YA ++F  +P  D   +  LI    ++    + ++  +  M+  +I P++ T+S+++K
Sbjct: 308 MDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILK 367

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           SCA +S  + GR VH HV  S   S   V  ALV+ YA+S  ++ AR+VF+++ ++S++ 
Sbjct: 368 SCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIP 427

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
             +     E   F  +      ++R D G++  S+T   +++A A +G +  G+ +H   
Sbjct: 428 CIT-----EGRDFPLD----HRIVRMDVGIS--SSTFASLISAAASVGMLTKGQQLHAMS 476

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  G   +  ++ SL++MY+RCG +  A   F+ + + NVI+WT+MISG   HGY   A+
Sbjct: 477 LKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERAL 536

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
            LFH M   GV+PN+VT++AVLSAC+H GLV+EG   F SM++++GL+P +EH+ CMVDL
Sbjct: 537 SLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDL 596

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
             R+G++ EA +F+ + +  K    VW  +LGAC+ H N ++G   A++++ +EP +P  
Sbjct: 597 LARSGIVKEALEFINE-MPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAP 655

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+LSN+YA AG  D V  +R+ M    L K  G S +EV+   + F  GD SHP   +I
Sbjct: 656 YVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDI 715

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           Y  LD L+ + +  GYVP++   +H++ +E +E  L  HSEK+A+AFGL+ TS    IRI
Sbjct: 716 YGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRI 775

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCHSAIK++S AT REII+RD  RFH  K G CSC +YW
Sbjct: 776 FKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 151/306 (49%), Gaps = 27/306 (8%)

Query: 90  SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG---------YDSD 140
           SLL    M+ S + P+ YT  A   +C           ++C V             + +D
Sbjct: 135 SLLLIGEMLESGLLPNAYTLCAAAHAC-------FPHELYCLVGGVVLGLVHKMGLWGTD 187

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           + V +AL++  A++ ++  ARKVFD + +K+VV W  +IS Y Q   A+EA+ LF    +
Sbjct: 188 VAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLE 247

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G  PD  T   +++AC +LG + LG  +H   +  GL  +  ++  L++MYA+  N+ +
Sbjct: 248 DGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAK-SNIGQ 306

Query: 261 ----AREIFDMMSELNVIAWTAMISGYGMHGYGTEAV-ELFHRMRAHGVRPNNVTFVAVL 315
               A ++F+ M + +VI+WTA+ISGY   G     V  LF  M    ++PN++T+ ++L
Sbjct: 307 AMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSIL 366

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV--CMVDLFGRAGLLNEAYKFVKDVIGE 373
            +CA       G +V A + +         H V   +V ++  +G + EA +    +   
Sbjct: 367 KSCASISDHDSGRQVHAHVIKSN---QASAHTVGNALVSMYAESGCMEEARRVFNQLYER 423

Query: 374 KPAPAV 379
              P +
Sbjct: 424 SMIPCI 429



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 10/161 (6%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           QQ+HA  + AG+G  R +   L+S+    G++  A R F  +   +   + ++I   +K 
Sbjct: 470 QQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKH 529

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS-----GYDS 139
            ++  +L  +  MI++ + P++ T+ AV+ +C+H+ ++  G+      F S     G   
Sbjct: 530 GYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGK----EYFRSMQRDHGLIP 585

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKS-VVAWNSMI 179
            +   A +V+  A+S  V  A +  + MP K+  + W +++
Sbjct: 586 RMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLL 626


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/579 (37%), Positives = 325/579 (56%), Gaps = 38/579 (6%)

Query: 5   QPHSPAYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P +  Y  +LKA      L+    +H  ++  G   +  +   L+++    G +  A+R
Sbjct: 116 RPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARR 175

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   D   +N+++   +      D+L   R M      P   T ++++ + A+ S 
Sbjct: 176 VFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTS- 234

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
                                           S NV    K+F  +  K++++WN MI  
Sbjct: 235 --------------------------------SENVLYVEKIFVNLERKNLISWNVMIRV 262

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y +N    +A+ L+  M    V PD+ T   VL AC  L  + LGR +HE++  + L  N
Sbjct: 263 YMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPN 322

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           ++L  SLI+MYARCG +  A+ +FD M   +V +WT++IS YGM G G  AV LF  M  
Sbjct: 323 LLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLN 382

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G  P+++ FVA+LSAC+H+GL+ EG   F  M  +Y + P +EH+ C+VDL GRAG ++
Sbjct: 383 SGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVD 442

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EAY  +K +  E P   VW  +L +C++  N D+G+  A++LL + PE  G+YV+LSNIY
Sbjct: 443 EAYNIIKQMPIE-PNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIY 501

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AGR   V  +R++M +K ++K  G S VE++ + + F  GD SHP + EIY+ L  L+
Sbjct: 502 AKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLV 561

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            + +E GYVPE++SA+H++EEE++E  L  HSEKLA+ F L+ T     IRI KNLR+C 
Sbjct: 562 AKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQE-YQIRITKNLRVCG 620

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCH A K IS    REIIVRD  RFHHFK G CSC DYW
Sbjct: 621 DCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 166/375 (44%), Gaps = 36/375 (9%)

Query: 15  LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLF 74
           L   P +K L+++H  +      ++ S+  KL+      G     +++F  +   +   +
Sbjct: 28  LDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFY 87

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           N +I      +   D LL +R M+     P NYT+  V+K+C+    L  G  +H  V  
Sbjct: 88  NVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLK 147

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
            G D +L V   L+  Y K   +  AR+VFD M  K VV+WNSM++GY  N    +A+ +
Sbjct: 148 VGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEI 207

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
              M D+G  PD  T   ++ A A                                    
Sbjct: 208 CREMEDYGQKPDGCTMASLMPAVANTSS-------------------------------- 235

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
             NV    +IF  +   N+I+W  MI  Y  +   T+AV+L+ +M    V P+ +TF +V
Sbjct: 236 -ENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASV 294

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L AC     +  G R+   + ++  L P +     ++D++ R G L++A K V D +  +
Sbjct: 295 LPACGDLSALLLGRRIHEYVEKK-KLCPNLLLENSLIDMYARCGCLDDA-KRVFDRMKFR 352

Query: 375 PAPAVWTAMLGACKM 389
              A WT+++ A  M
Sbjct: 353 DV-ASWTSLISAYGM 366



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 9/191 (4%)

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           A  Q  DI   + +H  I       N  L   L+  YA CG     R++FD MS+ NV+ 
Sbjct: 27  ALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVF 86

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           +  MI  Y  +    + + +F  M   G RP+N T+  VL AC+ +  ++ G  +   + 
Sbjct: 87  YNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVL 146

Query: 336 Q---EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKN 392
           +   ++ L  G      ++ ++G+ G L EA +   ++I +      W +M+     +  
Sbjct: 147 KVGLDFNLFVGNG----LIAMYGKCGCLFEARRVFDEMIWKDVVS--WNSMVAGYAHNMR 200

Query: 393 FDLGVEVAEHL 403
           FD  +E+   +
Sbjct: 201 FDDALEICREM 211


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/581 (35%), Positives = 334/581 (57%), Gaps = 9/581 (1%)

Query: 5   QPHSPAYEAILKA--GPR-LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   Y   L++   P  L+  +Q+H+H I +G G + S+ T + ++    G++  A+ 
Sbjct: 108 KPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAEL 167

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   ++  +  +++  ++A    D+L  + +M+   +    Y FS V+K+CA L  
Sbjct: 168 VFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEE 227

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           LN GR +H H+   G +S++ V   LV+FY K +N++ A K F+ + + + V+W+++I+G
Sbjct: 228 LNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITG 287

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q G  +EA+  F  +R   V+ +S T   +  AC+ L D + G   H   +   L   
Sbjct: 288 YCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAY 347

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
               +++I MY+RCG +  A  +F+ + + + +AWTA+I+GY   G   EA++LF RM+ 
Sbjct: 348 QHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQD 407

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GVRPN VTF+AVL+AC+H+GLV EG +   SM   YG+   ++H+ CMVD++ RAG L 
Sbjct: 408 CGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQ 467

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA + ++  +   P    W  +LG C  ++N ++G   AE+L  ++PE+   Y+++ N+Y
Sbjct: 468 EALELIRS-MPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLY 526

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A  G+      VR +M ++ L+K +  S + V  K + F +GDK HP T EIY  L+ L 
Sbjct: 527 ASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALN 586

Query: 482 GRC--REAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
                 E G + E E   + L   ER+  L  HSE+LALAFGL+ T     + + KNLR 
Sbjct: 587 DSVIKEETGLLTE-EDVSNSL--PERKEQLLVHSERLALAFGLISTPSSAPVVVFKNLRA 643

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCH   K +S+ T REI+VRD  RFHHFK G CSC DYW
Sbjct: 644 CKDCHDFGKQVSLITGREIVVRDSFRFHHFKLGECSCNDYW 684



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 185/389 (47%), Gaps = 7/389 (1%)

Query: 8   SP-AYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF 63
           SP +Y+ + +A  ++K L   +  H  +          +   +L + C  G +  A+++F
Sbjct: 9   SPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVF 68

Query: 64  FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123
             +   +   +NT+I   ++          +  M+     P+  T+   ++S  + S L 
Sbjct: 69  DEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLE 128

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
           +G+ +H H   SG  S+  V  A+ N Y K   ++ A  VF++M +K+ VAW  ++ GY 
Sbjct: 129 IGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYT 188

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           Q     +A+ LF  M + GV  D      VL ACA L +++ GR +H  IV  GL+  V 
Sbjct: 189 QAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVS 248

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           + T L++ Y +C N+  A + F+ +SE N ++W+A+I+GY   G   EA++ F  +R   
Sbjct: 249 VGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRS 308

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           V  N+ T+ ++  AC+       G +  A   +   L+        M+ ++ R G L+ A
Sbjct: 309 VDINSFTYTSIFQACSALADFNSGAQAHADAIKS-SLVAYQHGESAMITMYSRCGRLDYA 367

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKN 392
            +  + +  + P    WTA++       N
Sbjct: 368 TRVFESI--DDPDAVAWTAIIAGYAYQGN 394



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 154/305 (50%), Gaps = 5/305 (1%)

Query: 100 SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV 159
           + IS S  ++  + ++C  +  L  GR  H  +  +  +    ++ +++  Y K  ++  
Sbjct: 4   AGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLAD 63

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           ARKVFD M ++++V+WN++IS Y +NG   +   +F+ M +    P+ +T +  L +   
Sbjct: 64  ARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLN 123

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
              +++G+ +H   +  GL  N  + T++ NMY +CG +  A  +F+ MSE N +AWT +
Sbjct: 124 PSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGI 183

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           + GY       +A+ LF +M   GV  +   F  VL ACA    +  G ++   + +  G
Sbjct: 184 MVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVK-LG 242

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML-GACKMHKNFDLGVE 398
           L   V     +VD + +   L  A K  + +   +P    W+A++ G C+M + F+  ++
Sbjct: 243 LESEVSVGTPLVDFYVKCSNLESATKAFEWI--SEPNDVSWSALITGYCQMGE-FEEALK 299

Query: 399 VAEHL 403
             E L
Sbjct: 300 TFESL 304



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 108/221 (48%), Gaps = 16/221 (7%)

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M D G++    +  C+  AC ++  +  GR  HE +     +    L  S++ MY +CG+
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           ++ AR++FD M E N+++W  +IS Y  +G   +   +F  M     +PN  T++  L +
Sbjct: 61  LADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRS 120

Query: 318 CAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
             +   ++ G ++ + ++R   GL      +  + +++ + G L E  + V + + EK A
Sbjct: 121 LLNPSGLEIGKQIHSHAIRS--GLGSNASVNTAISNMYVKCGWL-EGAELVFEKMSEKNA 177

Query: 377 PAVWTA-MLGACKMHKNFDL----------GVEVAEHLLSV 406
            A WT  M+G  +  +  D           GVE+ E++ S+
Sbjct: 178 VA-WTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSI 217


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/556 (37%), Positives = 329/556 (59%), Gaps = 1/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH   + AG      + T L+ +    G +  A+ +F      D   +N ++   + +
Sbjct: 419 RQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVS 478

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           +   ++L  +  M          TF+   K+   L  L  G+ +H  V    +  DL V 
Sbjct: 479 DNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVI 538

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           + +++ Y K   +  ARKVF+++P    VAW ++ISG  +NG  ++A+  ++ MR  GV 
Sbjct: 539 SGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQ 598

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD  T   ++ AC+ L  ++ G+ +H  I+      +  + TSL++MYA+CGN+  A  +
Sbjct: 599 PDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGL 658

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  M+  +V  W AMI G   HG   EA+  F+ M++ GV P+ VTF+ VLSAC+H+GL 
Sbjct: 659 FRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLT 718

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            + ++ F SM++ YG+ P +EH+ C+VD   RAG + EA K V  +  E  A  ++  +L
Sbjct: 719 SDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASA-TMYRTLL 777

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            AC++  + + G  VAE L +++P +   YV+LSNIYA A + +     RN+M +  +KK
Sbjct: 778 NACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKK 837

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G+S +++  K +LF  GD+SH  T+ IY  ++ +M R +E GYVP++E A+ ++EEE+
Sbjct: 838 EPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEED 897

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E +L YHSEKLA+A+GLM+T P  T+R++KNLR+C DCH+AIK+IS    REI++RD  
Sbjct: 898 KESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDAN 957

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF+ G CSC DYW
Sbjct: 958 RFHHFRSGICSCGDYW 973



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 201/398 (50%), Gaps = 10/398 (2%)

Query: 1   MKNKQP-HSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFI 56
           +K++ P  S  Y  IL     L  L+   Q+H  ++  G+ +  S+    +++   AG +
Sbjct: 289 IKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSV 348

Query: 57  TYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC 116
            YA+R+F  +   D   +NT+I   +++     SL  +  ++ S + P  +T ++V+++C
Sbjct: 349 NYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRAC 408

Query: 117 AHLS-ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           + L     +GR VH     +G   D  V  AL++ Y+K   ++ A  +F       + +W
Sbjct: 409 SSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASW 468

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           N+M+ G+  +   +EA+ LF+LM + G   D  T      A   L  +  G+ +H  ++ 
Sbjct: 469 NAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIK 528

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
                ++ + + +++MY +CG +  AR++F+ +   + +AWT +ISG   +G   +A+  
Sbjct: 529 MRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFT 588

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEHHVCMVDLF 354
           +H+MR  GV+P+  TF  ++ AC+    +++G ++ A+ M+      P V     +VD++
Sbjct: 589 YHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV--MTSLVDMY 646

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKN 392
            + G + +AY   + +     + A+W AM+     H N
Sbjct: 647 AKCGNIEDAYGLFRRM--NTRSVALWNAMIVGLAQHGN 682



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 175/339 (51%), Gaps = 20/339 (5%)

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           YA ++F C    D  ++N  +    +A    +++  +R MI S +   + T+  ++   A
Sbjct: 249 YATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVA 308

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            L+ L LG+ +H  V   G+D  + V  + +N Y K+ +V+ AR++F +M +  +++WN+
Sbjct: 309 SLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNT 368

Query: 178 MISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGD-IDLGRWVHEFIVG 235
           +ISG  ++G  + ++ LF +L+R  G+ PD  T   VL AC+ L +   +GR VH   + 
Sbjct: 369 VISGCARSGLEECSLRLFIDLLRS-GLLPDQFTITSVLRACSSLEESYCVGRQVHTCALK 427

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
            G+ ++  ++T+LI++Y++ G + +A  +F      ++ +W AM+ G+ +     EA+ L
Sbjct: 428 AGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRL 487

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGL--LPGVEHHVCM 350
           F  M   G + + +TF     A      +Q+G   H V   MR  Y L  + G+      
Sbjct: 488 FSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGI------ 541

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAP--AVWTAMLGAC 387
           +D++ + G +  A K    V  + P+P    WT ++  C
Sbjct: 542 LDMYLKCGEMKSARK----VFNQIPSPDDVAWTTVISGC 576



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 133/250 (53%), Gaps = 1/250 (0%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           RL+  +Q+HA +I   +     +++ +L +    G +  A+++F  IPSPD   + T+I 
Sbjct: 515 RLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVIS 574

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
              +      +L  Y +M ++ + P  YTF+ ++K+C+ L+ L  G+ +H ++       
Sbjct: 575 GCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAF 634

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D  V  +LV+ YAK  N++ A  +F RM  +SV  WN+MI G  Q+G A+EA+  FN M+
Sbjct: 635 DPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMK 694

Query: 200 DFGVNPDSTTCVCVLAACAQLG-DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
             GV PD  T + VL+AC+  G   D  +         G++  +   + L++  +R G++
Sbjct: 695 SRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHI 754

Query: 259 SKAREIFDMM 268
            +A ++   M
Sbjct: 755 QEAEKVVSSM 764



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 153/335 (45%), Gaps = 20/335 (5%)

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D F+   L+   +K     ++ + + RM V ++   N    A ++  A   +L L  A H
Sbjct: 156 DVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFH 215

Query: 130 CHVFVSGYDSD-LHVQAALVNFYAKS---NNVDVAR----KVFDRMPDKSVVAWNSMISG 181
                SG   D + V+  L+    K+     ++  R    K+F    D  V  WN  +S 
Sbjct: 216 ----RSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSS 271

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q G   EA+  F  M    V  DS T + +L+  A L  ++LG+ +H  +V  G D  
Sbjct: 272 YLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQF 331

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V +A S INMY + G+V+ AR +F  M E+++I+W  +ISG    G    ++ LF  +  
Sbjct: 332 VSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLR 391

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGH---RVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
            G+ P+  T  +VL AC+    ++E +   R   +   + G++        ++D++ + G
Sbjct: 392 SGLLPDQFTITSVLRACSS---LEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGG 448

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
            + EA     +  G   A   W AM+    +  N+
Sbjct: 449 KMEEAELLFHNQDGFDLAS--WNAMMHGFTVSDNY 481



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 156/368 (42%), Gaps = 39/368 (10%)

Query: 9   PAYEAILK---AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P + +IL+   A   L   ++ HA ++ +G    R +   L+++    G +  A+++F  
Sbjct: 14  PQWFSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDI 73

Query: 66  IPSPDSFLFNTLIIRNSKANF--------STDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            P  D  L     I  + A+         + ++   +R +  S +  + +T S + K C 
Sbjct: 74  TPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCL 133

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
                +   A+  +    G   D+ V  ALVN YAK   +  AR +FDRMP + VV WN 
Sbjct: 134 LYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNV 193

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           M+  Y + G   E +GLF+     G+ PD  +   +L                      G
Sbjct: 194 MMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL---------------------MG 232

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           +    V    L  + A       A ++F    + +V  W   +S Y   G G EAV+ F 
Sbjct: 233 VGKKTVFERELEQVRAY------ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFR 286

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
            M    V  +++T++ +LS  A    ++ G ++  ++ + +G    V      ++++ +A
Sbjct: 287 DMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVR-FGWDQFVSVANSAINMYVKA 345

Query: 358 GLLNEAYK 365
           G +N A +
Sbjct: 346 GSVNYARR 353



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 10/225 (4%)

Query: 101 NISPSNY--TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158
           ++SPS+    + ++++     S L LG+  H  +  SG + D +V   L+  YAK  ++ 
Sbjct: 6   SVSPSSLLPQWFSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLF 65

Query: 159 VARKVFDRMP--DKSVVAWNSMISGYEQNG------FAKEAIGLFNLMRDFGVNPDSTTC 210
            ARK+FD  P  D+ +V +N++++ Y   G         EA  +F L+R   +     T 
Sbjct: 66  SARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTL 125

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
             +   C   G       +  + V  GL  +V +A +L+N+YA+   + +AR +FD M  
Sbjct: 126 SPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPV 185

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
            +V+ W  M+  Y   G G E + LF      G+RP+ V+   +L
Sbjct: 186 RDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL 230


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/524 (39%), Positives = 302/524 (57%), Gaps = 3/524 (0%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           AQ +    P+     +  LI  + +    T +L  +  M   +I P+++TF    K+   
Sbjct: 61  AQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGS 120

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L    +G+ VH     +G  SD+ V  +  + Y+K+   + ARK+FD MP++++  WN+ 
Sbjct: 121 LRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAY 180

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           +S     G   +A+  F   R  G+ P       VL+ACA L  +++G+ VH   V   +
Sbjct: 181 LSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACV 240

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             N+ + ++L++MY +CG++  A   FD M E N++ W AMI GY   G    AV LF  
Sbjct: 241 VGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDE 300

Query: 299 MR--AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
           M   +H V PN VTFV VLSAC+ AG V  G  +F SMR  YG+ PG EH+ C+VDL GR
Sbjct: 301 MTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGR 360

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
           AG++ +AY+F+K  +  +P  +VW A+LGA KM    +LG   A++L  ++P + G++V+
Sbjct: 361 AGMVEQAYQFIKK-MPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVL 419

Query: 417 LSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQY 476
           LSN++A AGR +   +VR  M   G+KK  G S +      ++F   D SH   +EI   
Sbjct: 420 LSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAM 479

Query: 477 LDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKN 536
           L +L G    AGY+P++  A+ +LEEEE+   + YHSEK+ALAFGL+    G+ IRI KN
Sbjct: 480 LAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKN 539

Query: 537 LRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           LR+C DCHSAIKFIS    REIIVRD   FH F+   CSC DYW
Sbjct: 540 LRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 157/333 (47%), Gaps = 8/333 (2%)

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL--HVQAALVNFYAKSNNVDV 159
           +SP+  + +++++S        LGRA H  + +   D+ L   +   LVN Y+K +  + 
Sbjct: 4   LSPN--SLASLVESAVSTQCSRLGRAAHAQI-IKTLDNPLPSFIYNHLVNMYSKLDRPNS 60

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           A+ +    P++SVV W ++I+G  QNG    A+  F+ MR   + P+  T  C   A   
Sbjct: 61  AQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGS 120

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
           L    +G+ VH   V  G   +V +  S  +MY++ G   +AR++FD M E N+  W A 
Sbjct: 121 LRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAY 180

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           +S   + G   +A+  F   R  G+ P +    +VLSACA   +++ G  V  ++  +  
Sbjct: 181 LSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVH-TLAVKAC 239

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
           ++  +     +VD++G+ G + +A +   D + E+     W AM+G        D+ V +
Sbjct: 240 VVGNIFVGSALVDMYGKCGSIEDAERAF-DEMPERNL-VTWNAMIGGYAHQGQADMAVTL 297

Query: 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432
            + +         +YV    + +   R   V V
Sbjct: 298 FDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNV 330


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/554 (35%), Positives = 330/554 (59%), Gaps = 2/554 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH +LI +G+         L+ +    G +  AQ +F      DS  +N+LI   +++ +
Sbjct: 344 VHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGY 403

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             + L  ++ M +    P + TF  ++   + L+ +N GR +HC V   G++++L +  +
Sbjct: 404 YKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNS 462

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ YAK   +D   KVF  M    +++WN++I+             + N MR  G+ PD
Sbjct: 463 LLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPD 522

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T + +L  C+ L     G+ +H +I   G + NV +  +LI MY++CG++    ++F 
Sbjct: 523 EATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFK 582

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M E +V+ WTA+IS +GM+G G +A++ F  M   GV P++V F+A + AC+H+G+V+E
Sbjct: 583 YMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKE 642

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G R F  M+ +Y L P +EH+ C+VDL  R+GLL +A +F+   +  KP  ++W A+L A
Sbjct: 643 GLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILS-MPMKPDASLWGALLSA 701

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C+   N ++   V++ +L +  ++ G+YV++SNIYA  G+ D+V+ VRN M  KGLKK  
Sbjct: 702 CRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEP 761

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
           G S +E+ ++ Y+F  GDKS    +++   L+ L+    + GYV + + A+H++EE+++ 
Sbjct: 762 GSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKR 821

Query: 507 YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
             L  HSE+LA+AFGL+ T PG  + ++KNLR+C DCH+  K+I+    REI+VRD  RF
Sbjct: 822 DMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRF 881

Query: 567 HHFKRGSCSCLDYW 580
           H FK G+CSC D+W
Sbjct: 882 HRFKDGACSCGDHW 895



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 220/449 (48%), Gaps = 15/449 (3%)

Query: 15  LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI-PSPDSFL 73
           L +      L+ VH+ +I +G   S     KL+S          +  +F  I P+ + +L
Sbjct: 29  LSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYL 88

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N++I   +     T +L +Y  M    + P  +TF +VI SCA +  L LG  VH H  
Sbjct: 89  WNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAM 148

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
             G++SDL++  AL++ Y++  ++D AR VF+ M ++  V+WNS+ISGY  NGF ++A+ 
Sbjct: 149 EMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALD 208

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           +++  R  G+ PD  T   VL AC  L  +  G  VH  I   G+  +V++   L++MY 
Sbjct: 209 MYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYF 268

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +   + +AR +F  M+  + + W  MI GY   G    +V+LF  M   G  P+ ++  +
Sbjct: 269 KFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITS 327

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC----MVDLFGRAGLLNEAYKFVKD 369
            + AC  +G +Q G  V      +Y +  G E        ++D++ + G L  A + V D
Sbjct: 328 TIRACGQSGDLQVGKFV-----HKYLIGSGFECDTVACNILIDMYAKCGDLLAAQE-VFD 381

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
               K +   W +++        +  G+E  + +      +   +V+L +I++    +++
Sbjct: 382 TTKCKDS-VTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADINQ 440

Query: 430 VEVVRNIMIQKGLKKH--VGYSTVEVDQK 456
              +   +I+ G +    +G S ++V  K
Sbjct: 441 GRGIHCDVIKFGFEAELIIGNSLLDVYAK 469


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/646 (34%), Positives = 345/646 (53%), Gaps = 72/646 (11%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P S     ++K    L  LQ   Q+H   +V+G G    +L+ LL +      +  A+ +
Sbjct: 72  PDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNV 131

Query: 63  FFCIPSPDSFLFNTLI--------IRNSKANFST-------------------------- 88
           F  +P P     + LI        ++ +K  F                            
Sbjct: 132 FDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSY 191

Query: 89  -DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL 147
            D++L ++ M +  + P   + S+V+ +   L +  +G  +HC+V   G   D  V +AL
Sbjct: 192 LDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSAL 251

Query: 148 VNFYAK-----------------------------SNN--VDVARKVFDRMP--DKSVVA 174
           ++ Y K                             S N  VD A +VF +    D +VV+
Sbjct: 252 IDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVS 311

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           W SMI+   QNG   EA+ LF  M+  GV P+S T  C+L AC  +  +  G+  H F +
Sbjct: 312 WTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSL 371

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             G+  +V + ++LI+MYA+CG +  +R  FDMM   N+++W ++++GY MHG   EA+ 
Sbjct: 372 RNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAIN 431

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
           +F  M+  G +P++V+F  VLSAC   GL +EG   F SM + +G+   +EH+ CMV L 
Sbjct: 432 IFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLL 491

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
           GR+G L EAY  +K +  E P   VW A+L +C++H   DLG   A+ +  +EP NPG+Y
Sbjct: 492 GRSGRLEEAYAMIKQMPFE-PDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNY 550

Query: 415 VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIY 474
           ++LSNIYA       V++VR++M  +GLKK+ GYS +E+  K ++   GD SHP   +I 
Sbjct: 551 ILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQII 610

Query: 475 QYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIV 534
           + L +L    +++GYVP ++  + ++EE+++E  L  HSEKLA+  GL+ T PG  ++++
Sbjct: 611 EKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVI 670

Query: 535 KNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KNLR+C DCH+ IKFIS    REI VRD  RFH FK G CSC DYW
Sbjct: 671 KNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 174/386 (45%), Gaps = 80/386 (20%)

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           SK N     +  +  M+   I P +     VIK+CA LS L  G+ +HC   VSG   D 
Sbjct: 50  SKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDS 109

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVV---------------------------- 173
            V ++L++ Y + +++  AR VFD++P   VV                            
Sbjct: 110 VVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDL 169

Query: 174 -------AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID-- 224
                  +WN MISG+ ++G   +A+ +F  M   G+ PD T+   VL A   +GD+D  
Sbjct: 170 GVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPA---VGDLDMP 226

Query: 225 -LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE------------- 270
            +G  +H +++ QGL  +  + ++LI+MY +C   S+   +F+ M E             
Sbjct: 227 LMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGL 286

Query: 271 --------------------LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
                               LNV++WT+MI+    +G   EA+ELF  M+  GV+PN+VT
Sbjct: 287 SRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVT 346

Query: 311 FVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
              +L AC +   +  G      S+R   G+   V     ++D++ + G +  A +   D
Sbjct: 347 IPCLLPACGNIAALLHGKAAHCFSLRN--GIFNDVYVGSALIDMYAKCGRM-LASRLCFD 403

Query: 370 VIGEKPAPAVWTAMLGACKMH-KNFD 394
           ++  +   + W +++    MH K F+
Sbjct: 404 MMPNRNLVS-WNSLMAGYAMHGKTFE 428


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/561 (36%), Positives = 328/561 (58%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           R+K  +Q H +L+ +G    + +   L+ +      +  A +I   +P  D F +N+++ 
Sbjct: 143 RVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILS 202

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
              ++    ++    +RM+   +   + T+ +V+  CA +  L LG  +H  +  +G   
Sbjct: 203 ALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVF 262

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D+ V + L++ Y K   V  ARK FD + D++VVAW ++++ Y QNG  +E + LF  M 
Sbjct: 263 DVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKME 322

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
                P+  T   +L ACA L  +  G  +H  IV  G   ++++  +LINMY++ GN+ 
Sbjct: 323 LEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNID 382

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            +  +F  M   +VI W AMI GY  HG G +A+ +F  M + G  PN VTF+ VLSAC 
Sbjct: 383 SSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACV 442

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H  LVQEG   F  + +++ + PG+EH+ CMV L GRAGLL+EA  F+K     K     
Sbjct: 443 HLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVA 502

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W  +L AC +H+N++LG ++ E ++ ++P + G Y +LSN++A A + D V  +R +M +
Sbjct: 503 WRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKE 562

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           + +KK  G S +++    ++F     +HP + +I++ + +L+   +  GY P+    +H+
Sbjct: 563 RNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVVLHD 622

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           +E+E++E  L +HSEKLALA+GLM+  P   IRI+KNLRMC DCH A+K IS ATNR II
Sbjct: 623 VEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHIAVKLISKATNRLII 682

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           VRD  RFHHF+ G C+C D+W
Sbjct: 683 VRDANRFHHFREGLCTCNDHW 703



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 200/393 (50%), Gaps = 21/393 (5%)

Query: 6   PHSPAYEAI---LKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTK---LLSLVCDAGFI 56
           PH  + + +   LK     K L   + +HA L+V       S +T+   L++L    G  
Sbjct: 18  PHPCSLKEVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQS 77

Query: 57  TYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKS 115
             A+++F  +   +   ++ L++         + L  +R ++ + +  P+ Y F+ V+  
Sbjct: 78  KCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSC 137

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           CA    +  G+  H ++  SG     +V+ AL++ Y++  +VD A ++ D +P   V ++
Sbjct: 138 CADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSY 197

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           NS++S   ++G   EA  +   M D  V  DS T V VL  CAQ+ D+ LG  +H  ++ 
Sbjct: 198 NSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLK 257

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
            GL  +V ++++LI+ Y +CG V  AR+ FD + + NV+AWTA+++ Y  +G+  E + L
Sbjct: 258 TGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNL 317

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMV 351
           F +M     RPN  TF  +L+ACA    +  G  +   +     ++ G ++H+     ++
Sbjct: 318 FTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRI-----VMSGFKNHLIVGNALI 372

Query: 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           +++ ++G ++ +Y    +++        W AM+
Sbjct: 373 NMYSKSGNIDSSYNVFSNMMNRD--VITWNAMI 403


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/609 (35%), Positives = 351/609 (57%), Gaps = 36/609 (5%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+S     ++ A  +L+ L+   +V+A +  +G   +  M++ L+ +      I  A+R+
Sbjct: 234 PNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRL 293

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F    + +  L N +     +   + ++L  +  M+ S + P   +  + I SC+ L  +
Sbjct: 294 FDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNI 353

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G++ H +V  +G++S  ++  AL++ Y K +  D A ++FDRM +K+VV WNS+++GY
Sbjct: 354 LWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGY 413

Query: 183 EQNG-------------------------------FAKEAIGLFNLMR-DFGVNPDSTTC 210
            +NG                                 +EAI +F  M+   GVN D  T 
Sbjct: 414 VENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTM 473

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           + + +AC  LG +DL +W++ +I   G+ ++V L T+L++M++RCG+   A  IF+ ++ 
Sbjct: 474 MSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTN 533

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            +V AWTA I    M G    A+ELF  M   G++P+ V FV  L+AC+H GLVQ+G  +
Sbjct: 534 RDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEI 593

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           F SM + +G+ P   H+ CMVDL GRAGLL EA + ++D+  E P   +W ++L AC++ 
Sbjct: 594 FYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPME-PNDVIWNSLLAACRVQ 652

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
            N ++    AE +  + PE  G YV+LSN+YA AGR + +  VR  M +KGL+K  G S+
Sbjct: 653 GNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSS 712

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLR 510
           +++  K + F+ GD+SHP    I   LDE+  R    G+VP+  + + +++E+E+ + L 
Sbjct: 713 IQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLS 772

Query: 511 YHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
            HSEKLA+A+GL+ ++ G TIRIVKNLR+C DCHS  KF S   NREII+RD  RFH+ +
Sbjct: 773 RHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIR 832

Query: 571 RGSCSCLDY 579
           +G CSC D+
Sbjct: 833 QGKCSCGDF 841



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 185/323 (57%), Gaps = 5/323 (1%)

Query: 3   NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF---ITYA 59
           N+   + A  + LK    +  L+  H  L   G     S +TKL++  C+ G    +++A
Sbjct: 27  NQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFA 86

Query: 60  QRIFFCIPSPDS-FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           + +F    S  + F++N+LI   + +    +++L + RM+ S ISP  YTF   + +CA 
Sbjct: 87  KEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAK 146

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
                 G  +H  +   GY  DL VQ +LV+FYA+   +D ARKVFD M +++VV+W SM
Sbjct: 147 SRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSM 206

Query: 179 ISGYEQNGFAKEAIGL-FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           I GY +  FAK+A+ L F ++RD  V P+S T VCV++ACA+L D++ G  V+ FI   G
Sbjct: 207 ICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSG 266

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           ++VN ++ ++L++MY +C  +  A+ +FD     N+    AM S Y   G   EA+ +F+
Sbjct: 267 IEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFN 326

Query: 298 RMRAHGVRPNNVTFVAVLSACAH 320
            M   GVRP+ ++ ++ +S+C+ 
Sbjct: 327 LMMDSGVRPDRISMLSAISSCSQ 349



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 201/412 (48%), Gaps = 36/412 (8%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           Q+H  ++  GY +   +   L+    + G +  A+++F  +   +   + ++I   ++ +
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214

Query: 86  FSTDSL-LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           F+ D++ LF+R +    ++P++ T   VI +CA L  L  G  V+  +  SG + +  + 
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV 274

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           +ALV+ Y K N +DVA+++FD     ++   N+M S Y + G  +EA+G+FNLM D GV 
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC--------- 255
           PD  + +  +++C+QL +I  G+  H +++  G +    +  +LI+MY +C         
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394

Query: 256 ----------------------GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
                                 G V  A E F+ M E N+++W  +ISG        EA+
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAI 454

Query: 294 ELFHRMRAH-GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           E+F  M++  GV  + VT +++ SAC H G +     ++  + +  G+   V     +VD
Sbjct: 455 EVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKN-GIQLDVRLGTTLVD 513

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           +F R G    A      +       + WTA +GA  M  N +  +E+ + ++
Sbjct: 514 MFSRCGDPESAMSIFNSLTNRD--VSAWTAAIGAMAMAGNAERAIELFDDMI 563


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 323/565 (57%), Gaps = 33/565 (5%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T LL  + DAG +  A+R+F  +P  D   +  ++    +A   T++   +  M   N+ 
Sbjct: 147 TVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV- 205

Query: 104 PSNYTFSAVIKSCAHLSILNLGRA----------VHCHVFVSGYDSDLHVQAALVNF--- 150
               +++A+I   A    +NL R           V     + GY    HV+ A   F   
Sbjct: 206 ---VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAM 262

Query: 151 --------------YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN 196
                         + +   VD A+ VF++M ++    W++MI  YEQN F  EA+  F 
Sbjct: 263 PEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFR 322

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            M   GV P+  + + +L  CA L  +D GR VH  ++    D++V   ++LI MY +CG
Sbjct: 323 EMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCG 382

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
           N+ KA+ +F      +++ W +MI+GY  HG G +A+ +FH MR  G+ P+ +T++  L+
Sbjct: 383 NLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALT 442

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC++ G V+EG  +F SM     + PG EH+ CMVDL GR+GL+ EA+  +K++  E P 
Sbjct: 443 ACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVE-PD 501

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
             +W A++GAC+MH+N ++    A+ LL +EP N G YV+LS+IY   GR +    +R  
Sbjct: 502 AVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKF 561

Query: 437 MIQKGLKKHVGYSTVEVDQKNYLFSMGDK-SHPNTNEIYQYLDELMGRCREAGYVPESES 495
           +  + L K  G S +E D++ +LF+ GD  +HP    I + L++L G   E+GY  +   
Sbjct: 562 ISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSF 621

Query: 496 AMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
            +H+++EE++ +SLRYHSE+ A+A+GL++   GM IR++KNLR+C DCHSAIK I+  T+
Sbjct: 622 VLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITS 681

Query: 556 REIIVRDRLRFHHFKRGSCSCLDYW 580
           REI++RD  RFHHFK G CSC DYW
Sbjct: 682 REIVLRDANRFHHFKDGFCSCRDYW 706



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 151/338 (44%), Gaps = 71/338 (21%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM--RDFG- 202
           A +   A++ N++ AR  F+ MP ++  ++N++++GY +N     A+GLF  M  RD   
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 203 -------------VNPDSTTCVC----------------------VLAACAQL------- 220
                          PD+   +                       +LA   +L       
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER 141

Query: 221 ----------GDIDLGRWVHEF--IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
                     G +D GR V+E   +  +  D +VV  T++++ Y + G +++AR +FD M
Sbjct: 142 NHVSYTVLLGGLLDAGR-VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
            + NV++WTAMISGY  +G    A +LF  M       N V++ A+L     AG V++  
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAA 256

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
            +F +M +     P    +  MV  FG+ G+++ A K V + + E+     W+AM+ A +
Sbjct: 257 ELFNAMPEH----PVAACNAMMVG-FGQRGMVDAA-KTVFEKMRER-DDGTWSAMIKAYE 309

Query: 389 MHKNFDLGVEVAEHLL--SVEPENPGHYVMLSNIYALA 424
            ++     +     +L   V P  P    +L+   ALA
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALA 347



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/180 (19%), Positives = 81/180 (45%), Gaps = 5/180 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+ P+  +IL     L  L   ++VHA ++   +      ++ L+++    G +  A+R
Sbjct: 330 RPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKR 389

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F      D  ++N++I   ++      +L  +  M ++ +SP   T+   + +C++   
Sbjct: 390 VFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGK 449

Query: 122 LNLGRAVHCHVFV-SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMI 179
           +  GR +   + V S         + +V+   +S  V+ A  +   MP +   V W +++
Sbjct: 450 VKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM 509


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/587 (36%), Positives = 341/587 (58%), Gaps = 11/587 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQ 60
           +P    + + L A  RL+ L   +++HA++I      + S + + L+ +      +  A+
Sbjct: 268 RPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKAR 327

Query: 61  RIFFCIPSPDSFL--FNTLIIRNSKANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCA 117
           ++F  +P     L  +N +I   ++A    ++L  + RM   +   P   T ++V+ +CA
Sbjct: 328 QVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA 387

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
                    AVH +V   G   +  VQ AL++ YA+    DVAR++F  +    VV+WN+
Sbjct: 388 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 447

Query: 178 MISGYEQNGFAKEAIGLFNLMRDF---GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           +I+G    G   +A  L   M+     GV P++ T + +L  CA L     G+ +H + V
Sbjct: 448 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 507

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
              LD +V + ++L++MYA+CG ++ +R +FD +   N I W  +I  YGMHG G EA  
Sbjct: 508 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATV 567

Query: 295 LFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           LF RM A G  RPN VTF+A L+AC+H+G+V  G ++F +M +++G+ P  +   C+VD+
Sbjct: 568 LFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDI 627

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GRAG L+EAY  V  +   +   + W+ MLGAC++H+N  LG    E LL +EPE   H
Sbjct: 628 LGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASH 687

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+L NIY+ AG+  R   VR+ M ++G+ K  G S +EVD   + F  G+ +HP + E+
Sbjct: 688 YVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEV 747

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           + +++ L G     GY P++   +H++++ ++   LR HSEKLA+AFGL+R +PG TIR+
Sbjct: 748 HAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRV 807

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCH A KF+S    REI++RD  RFHHF+ G CSC DYW
Sbjct: 808 AKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 177/396 (44%), Gaps = 43/396 (10%)

Query: 39  SRSMLTKLLSLVCDAGFITYAQRIFFCIPSP--DSFLFNTLIIRNSKANFSTDSLLFYRR 96
           S ++   LL+     G +  A  +F  I     D+  FN+LI           +L  +RR
Sbjct: 93  SPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLI----------SALCLFRR 142

Query: 97  ----------MIVSNISPSNYTFSAVIKSCAHL----SILNLGRAVHCHVFVSGYDSDLH 142
                     M+      +++T  +V+++ +HL    + + LGR  H     +G    LH
Sbjct: 143 WDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGL---LH 199

Query: 143 VQA-----ALVNFYAKSNNVDVARKVF-DRMPDKS-VVAWNSMISGYEQNGFAKEAIGLF 195
                   AL++ YA+   V  A+++F    P +  VV WN+M+S   Q+G   EA+   
Sbjct: 200 GHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTL 259

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG-LDVNVVLATSLINMYAR 254
             M   GV PD  T    L AC++L  +D+GR +H +++    L  N  +A++L++MYA 
Sbjct: 260 YDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYAT 319

Query: 255 CGNVSKAREIFDMM--SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVRPNNVTF 311
              V KAR++FDM+  S   +  W AMI GY   G   EA+ LF RM A  G  P   T 
Sbjct: 320 HEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTM 379

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
            +VL ACA +     G         + G+         ++D++ R G  + A +    V 
Sbjct: 380 ASVLPACARSEAFA-GKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMV- 437

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
            + P    W  ++  C +  +     ++A  +  +E
Sbjct: 438 -DLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLE 472


>gi|224118652|ref|XP_002331415.1| predicted protein [Populus trichocarpa]
 gi|222873629|gb|EEF10760.1| predicted protein [Populus trichocarpa]
          Length = 458

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/455 (41%), Positives = 297/455 (65%), Gaps = 2/455 (0%)

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
           ++H  +F  G ++   +   L+  YAK  ++  ARKVFD    K+V  W S+I GY   G
Sbjct: 5   SLHSLIFKCGCENKDPLDNLLLGMYAKCGDLISARKVFDMALVKTVFLWTSIIGGYTHMG 64

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
           +  EA+ LF  +    + P+  T   +L+ACA LG +D+G+ + E+I+  G   +  + T
Sbjct: 65  YPAEALLLFKKLLKTAIKPNGATLATILSACADLGSLDMGKEIEEYILSNGFQSDRQVQT 124

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM-RAHGVR 305
           SLI+M+++CG++ KA  +F+ +S+ ++ AW++MI+GY +HG   EA+ LFH+M     ++
Sbjct: 125 SLIHMFSKCGSIGKAISVFERISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIKEIK 184

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
           P+ V F ++L AC+H GLV++G + F SM++++G++P VEH++C+VDL GRAG    A K
Sbjct: 185 PDAVVFTSILLACSHVGLVEDGLKFFKSMQKDFGIVPSVEHYMCLVDLLGRAGQFELALK 244

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
            ++ V+  K    VW   L AC  H N +LG   A  LL + P +  +YV+++N+Y   G
Sbjct: 245 TIR-VMPVKLQAQVWAPFLSACTKHCNLELGELAARKLLYMNPGSHANYVLMANLYTSMG 303

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
           +     V R++MI +GL K  G+S VE++   ++F  GD+SH  + +IY+ L+E+  +  
Sbjct: 304 KWKEAAVTRSLMIDRGLVKAPGWSQVEINGSVHVFIAGDRSHTQSIDIYKKLEEINLKLA 363

Query: 486 EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
           EAGYVPE+++ +H+LE EE+E +L+ HSE+LA+AFGL+ T  G T+RI+KN R CVDCHS
Sbjct: 364 EAGYVPETDTVIHDLEREEKEEALKVHSERLAIAFGLISTEAGSTLRIMKNHRTCVDCHS 423

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           A+KFIS  T R +IVRD  RFHHF+ G C+C D+W
Sbjct: 424 ALKFISKITGRHLIVRDGSRFHHFESGKCTCKDFW 458



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 130/247 (52%), Gaps = 9/247 (3%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LL +    G +  A+++F        FL+ ++I   +   +  ++LL +++++ + I P+
Sbjct: 25  LLGMYAKCGDLISARKVFDMALVKTVFLWTSIIGGYTHMGYPAEALLLFKKLLKTAIKPN 84

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
             T + ++ +CA L  L++G+ +  ++  +G+ SD  VQ +L++ ++K  ++  A  VF+
Sbjct: 85  GATLATILSACADLGSLDMGKEIEEYILSNGFQSDRQVQTSLIHMFSKCGSIGKAISVFE 144

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-VNPDSTTCVCVLAACAQLGDID 224
           R+ DK + AW+SMI+GY  +G A+EA+GLF+ M +   + PD+     +L AC+ +G ++
Sbjct: 145 RISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIKEIKPDAVVFTSILLACSHVGLVE 204

Query: 225 LGRWVHEFIVGQGLDVNVVLATS----LINMYARCGNVSKAREIFDMMS-ELNVIAWTAM 279
            G    +F      D  +V +      L+++  R G    A +   +M  +L    W   
Sbjct: 205 DGL---KFFKSMQKDFGIVPSVEHYMCLVDLLGRAGQFELALKTIRVMPVKLQAQVWAPF 261

Query: 280 ISGYGMH 286
           +S    H
Sbjct: 262 LSACTKH 268


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/548 (37%), Positives = 332/548 (60%), Gaps = 3/548 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H H++  G      +   L+++    G +  AQ +F  +   D   +N++I    + N 
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND 303

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY-DSDLHVQA 145
            + +L F++ M +  I P   T  ++    + LS   + R++   V    + D D+ +  
Sbjct: 304 PSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGN 363

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVN 204
           ALVN YAK   ++ A  VFD++P K  ++WN++++GY QNG A EAI  +N+M +     
Sbjct: 364 ALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTI 423

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T V ++ A + +G +  G  +H  ++   L ++V +AT LI++Y +CG +  A  +
Sbjct: 424 PNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSL 483

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  +     + W A+I+  G+HG G EA++LF  M A  V+ +++TFV++LSAC+H+GLV
Sbjct: 484 FYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLV 543

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG + F  M++EYG+ P ++H+ CMVDL GRAG L +AY+ V++ +  +P  ++W A+L
Sbjct: 544 DEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRN-MPIQPDASIWGALL 602

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            ACK++ N +LG   ++ LL V+ EN G+YV+LSNIYA   + + V  VR++   +GL+K
Sbjct: 603 SACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRK 662

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G+S+V V  K  +F  G+++HP   EIY+ L  L  + +  GYVP+      ++EE+E
Sbjct: 663 TPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDE 722

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E  L  HSE+LA+AFG++ T P   IRI KNLR+C DCH+A K+IS  + REI+VRD  
Sbjct: 723 KEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSN 782

Query: 565 RFHHFKRG 572
           RFHHFK G
Sbjct: 783 RFHHFKDG 790



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 228/451 (50%), Gaps = 12/451 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           +P    +  ILKA   L   ++VH  +   G+     +   L+ L    G +  A ++F 
Sbjct: 121 RPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFV 180

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
            +P  D   +N +I    +   +  +L    RM    +     T ++++  CA    +  
Sbjct: 181 DMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVIN 240

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G  +H HV   G DSD+ V  AL+N Y+K   +  A+ VFD+M  + +V+WNS+I+ YEQ
Sbjct: 241 GVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQ 300

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV-GQGLDVNVV 243
           N     A+  F  M+  G+ PD  T V + +  +QL D  + R +  F++  + LD +VV
Sbjct: 301 NNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVV 360

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM-RAH 302
           +  +L+NMYA+ G ++ A  +FD +   + I+W  +++GY  +G  +EA++ ++ M    
Sbjct: 361 IGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECR 420

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
              PN  T+V+++ A +H G +Q+G ++ A + +   L   V    C++DL+G+ G L +
Sbjct: 421 DTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN-SLYLDVFVATCLIDLYGKCGRLED 479

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A     ++  +   P  W A++ +  +H   +  +++ + +L+ E     H   +S + A
Sbjct: 480 AMSLFYEIPRDTSVP--WNAIIASLGIHGRGEEALQLFKDMLA-ERVKADHITFVSLLSA 536

Query: 423 L--AGRMDRVEVVRNIMIQK-GLK---KHVG 447
              +G +D  +   +IM ++ G+K   KH G
Sbjct: 537 CSHSGLVDEGQKCFDIMQKEYGIKPSLKHYG 567



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 195/358 (54%), Gaps = 7/358 (1%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           + A+  +   +   +++HA L+V G  ++  + TKL++L    G I+ ++  F  I   +
Sbjct: 25  FNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKN 84

Query: 71  SFLFNTLI---IRNSKANFSTDSL-LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
            F +N++I   +R  K + + + +   +      ++ P  YTF  ++K+C  L     G+
Sbjct: 85  IFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GK 141

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            VHC VF  G++ D+ V A+LV+ Y++   +DVA KVF  MP K V +WN+MISG+ QNG
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
            A  A+G+ N M+  GV  D+ T   +L  CAQ  D+  G  +H  ++  GLD +V ++ 
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSN 261

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           +LINMY++ G +  A+ +FD M   ++++W ++I+ Y  +   + A+  F  M+  G+RP
Sbjct: 262 ALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRP 321

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
           + +T V++ S  +     +    +   + +   L   V     +V+++ + G +N A+
Sbjct: 322 DLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAH 379


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/587 (36%), Positives = 341/587 (58%), Gaps = 11/587 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQ 60
           +P    + + L A  RL+ L   +++HA++I      + S + + L+ +      +  A+
Sbjct: 270 RPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKAR 329

Query: 61  RIFFCIPSPDSFL--FNTLIIRNSKANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCA 117
           ++F  +P     L  +N +I   ++A    ++L  + RM   +   P   T ++V+ +CA
Sbjct: 330 QVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA 389

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
                    AVH +V   G   +  VQ AL++ YA+    DVAR++F  +    VV+WN+
Sbjct: 390 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 449

Query: 178 MISGYEQNGFAKEAIGLFNLMRDF---GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           +I+G    G   +A  L   M+     GV P++ T + +L  CA L     G+ +H + V
Sbjct: 450 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 509

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
              LD +V + ++L++MYA+CG ++ +R +FD +   N I W  +I  YGMHG G EA  
Sbjct: 510 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATV 569

Query: 295 LFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           LF RM A G  RPN VTF+A L+AC+H+G+V  G ++F +M +++G+ P  +   C+VD+
Sbjct: 570 LFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDI 629

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GRAG L+EAY  V  +   +   + W+ MLGAC++H+N  LG    E LL +EPE   H
Sbjct: 630 LGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASH 689

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+L NIY+ AG+  R   VR+ M ++G+ K  G S +EVD   + F  G+ +HP + E+
Sbjct: 690 YVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEV 749

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           + +++ L G     GY P++   +H++++ ++   LR HSEKLA+AFGL+R +PG TIR+
Sbjct: 750 HAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRV 809

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCH A KF+S    REI++RD  RFHHF+ G CSC DYW
Sbjct: 810 AKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 856



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 177/396 (44%), Gaps = 43/396 (10%)

Query: 39  SRSMLTKLLSLVCDAGFITYAQRIFFCIPSP--DSFLFNTLIIRNSKANFSTDSLLFYRR 96
           S ++   LL+     G +  A  +F  I     D+  FN+LI           +L  +RR
Sbjct: 95  SPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLI----------SALCLFRR 144

Query: 97  ----------MIVSNISPSNYTFSAVIKSCAHL----SILNLGRAVHCHVFVSGYDSDLH 142
                     M+      +++T  +V+++ +HL    + + LGR  H     +G    LH
Sbjct: 145 WDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGL---LH 201

Query: 143 VQA-----ALVNFYAKSNNVDVARKVF-DRMPDKS-VVAWNSMISGYEQNGFAKEAIGLF 195
                   AL++ YA+   V  A+++F    P +  VV WN+M+S   Q+G   EA+   
Sbjct: 202 GHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTL 261

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG-LDVNVVLATSLINMYAR 254
             M   GV PD  T    L AC++L  +D+GR +H +++    L  N  +A++L++MYA 
Sbjct: 262 YDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYAT 321

Query: 255 CGNVSKAREIFDMM--SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVRPNNVTF 311
              V KAR++FDM+  S   +  W AMI GY   G   EA+ LF RM A  G  P   T 
Sbjct: 322 HEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTM 381

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
            +VL ACA +     G         + G+         ++D++ R G  + A +    V 
Sbjct: 382 ASVLPACARSEAFA-GKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMV- 439

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
            + P    W  ++  C +  +     ++A  +  +E
Sbjct: 440 -DLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLE 474


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/565 (36%), Positives = 323/565 (57%), Gaps = 33/565 (5%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T LL  + DAG +  A+R+F  +P  D   +  ++    +A   T++   +  M   N+ 
Sbjct: 147 TVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV- 205

Query: 104 PSNYTFSAVIKSCAHLSILNLGRA----------VHCHVFVSGYDSDLHVQAALVNF--- 150
               +++A+I   A    +NL R           V     + GY    HV+ A   F   
Sbjct: 206 ---VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAM 262

Query: 151 --------------YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN 196
                         + +   VD A+ VF++M ++    W++MI  YEQN F  EA+  F 
Sbjct: 263 PEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFR 322

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            M   GV P+  + + +L  CA L  +D GR VH  ++    D++V   ++LI MY +CG
Sbjct: 323 EMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCG 382

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
           N+ KA+ +F      +++ W +MI+GY  HG G +A+ +FH MR  G+ P+ +T++  L+
Sbjct: 383 NLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALT 442

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC++ G V+EG  +F SM     + PG EH+ CMVDL GR+GL+ EA+  +K++  E P 
Sbjct: 443 ACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVE-PD 501

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
             +W A++GAC+MH+N ++    A+ LL +EP N G YV+LS+IY   GR +    +R  
Sbjct: 502 AVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKF 561

Query: 437 MIQKGLKKHVGYSTVEVDQKNYLFSMGDK-SHPNTNEIYQYLDELMGRCREAGYVPESES 495
           +  + L K  G S +E D++ +LF+ GD  +HP    I + L++L G   E+GY  +   
Sbjct: 562 ISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSF 621

Query: 496 AMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
            +H+++EE++ +SLRYHSE+ A+A+GL++   GM IR++KNLR+C DCHSAIK I+  T+
Sbjct: 622 VLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITS 681

Query: 556 REIIVRDRLRFHHFKRGSCSCLDYW 580
           REII+RD  RFHHFK G CSC DYW
Sbjct: 682 REIILRDANRFHHFKDGFCSCRDYW 706



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 151/338 (44%), Gaps = 71/338 (21%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM--RDFG- 202
           A +   A++ N++ AR  F+ MP ++  ++N++++GY +N     A+GLF  M  RD   
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 203 -------------VNPDSTTCVC----------------------VLAACAQL------- 220
                          PD+   +                       +LA   +L       
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER 141

Query: 221 ----------GDIDLGRWVHEF--IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
                     G +D GR V+E   +  +  D +VV  T++++ Y + G +++AR +FD M
Sbjct: 142 NHVSYTVLLGGLLDAGR-VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
            + NV++WTAMISGY  +G    A +LF  M       N V++ A+L     AG V++  
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAA 256

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
            +F +M +     P    +  MV  FG+ G+++ A K V + + E+     W+AM+ A +
Sbjct: 257 ELFNAMPEH----PVAACNAMMVG-FGQRGMVDAA-KTVFEKMCERD-DGTWSAMIKAYE 309

Query: 389 MHKNFDLGVEVAEHLL--SVEPENPGHYVMLSNIYALA 424
            ++     +     +L   V P  P    +L+   ALA
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALA 347



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/180 (19%), Positives = 81/180 (45%), Gaps = 5/180 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+ P+  +IL     L  L   ++VHA ++   +      ++ L+++    G +  A+R
Sbjct: 330 RPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKR 389

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F      D  ++N++I   ++      +L  +  M ++ +SP   T+   + +C++   
Sbjct: 390 VFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGK 449

Query: 122 LNLGRAVHCHVFV-SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMI 179
           +  GR +   + V S         + +V+   +S  V+ A  +   MP +   V W +++
Sbjct: 450 VKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM 509


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/427 (45%), Positives = 277/427 (64%), Gaps = 2/427 (0%)

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
           S NV    ++F  +  KS+V+WN MIS Y +N    +++ L+  M    V PD+ TC  V
Sbjct: 249 SENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASV 308

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           L AC  L  + LGR +HE++  + L  N++L  SLI+MYARCG +  A+ +FD M   +V
Sbjct: 309 LRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDV 368

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
            +WT++IS YGM G G  AV LF  M+  G  P+++ FVA+LSAC+H+GL+ EG   F  
Sbjct: 369 ASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQ 428

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
           M  +Y + P +EH  C+VDL GR+G ++EAY  +K  +  KP   VW A+L +C+++ N 
Sbjct: 429 MTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQ-MPMKPNERVWGALLSSCRVYSNM 487

Query: 394 DLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEV 453
           D+G+  A+ LL + PE  G+YV+LSNIYA AGR   V  +R++M ++ ++K  G S VE+
Sbjct: 488 DIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVEL 547

Query: 454 DQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHS 513
           + + + F  GD  HP + EIY+ L  L+G+ +E GYVP+++SA+H++EEE++E  L  HS
Sbjct: 548 NNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHS 607

Query: 514 EKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGS 573
           EKLA+ F ++ T     IRI KNLR+C DCH A K IS    REI++RD  RFHHFK G 
Sbjct: 608 EKLAIVFAILNTQES-PIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGI 666

Query: 574 CSCLDYW 580
           CSC DYW
Sbjct: 667 CSCGDYW 673



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 102/192 (53%)

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           + VH  VF   +  +  +   L+  YA      +AR VFD +P+++V+ +N MI  Y  N
Sbjct: 52  KNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNN 111

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
               +A+ +F  M   G +PD  T  CVL AC+   ++ +G  +H  +   GLD+N+ + 
Sbjct: 112 HLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVG 171

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
             LI +Y +CG + +AR + D M   +V++W +M++GY  +    +A+++   M     +
Sbjct: 172 NGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQK 231

Query: 306 PNNVTFVAVLSA 317
           P+  T  ++L A
Sbjct: 232 PDACTMASLLPA 243


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/565 (36%), Positives = 323/565 (57%), Gaps = 33/565 (5%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T LL  + DAG +  A+R+F  +P  D   +  ++    +A   T++   +  M   N+ 
Sbjct: 147 TVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV- 205

Query: 104 PSNYTFSAVIKSCAHLSILNLGRA----------VHCHVFVSGYDSDLHVQAALVNF--- 150
               +++A+I   A    +NL R           V     + GY    HV+ A   F   
Sbjct: 206 ---VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAM 262

Query: 151 --------------YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN 196
                         + +   VD A+ VF++M ++    W++MI  YEQN F  EA+  F 
Sbjct: 263 PEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFR 322

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            M   GV P+  + + +L  CA L  +D GR VH  ++    D++V   ++LI MY +CG
Sbjct: 323 EMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCG 382

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
           N+ KA+ +F      +++ W +MI+GY  HG G +A+ +FH MR  G+ P+ +T++  L+
Sbjct: 383 NLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALT 442

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC++ G V+EG  +F SM     + PG EH+ CMVDL GR+GL+ EA+  +K++  E P 
Sbjct: 443 ACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVE-PD 501

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
             +W A++GAC+MH+N ++    A+ LL +EP N G YV+LS+IY   GR +    +R  
Sbjct: 502 AVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKF 561

Query: 437 MIQKGLKKHVGYSTVEVDQKNYLFSMGDK-SHPNTNEIYQYLDELMGRCREAGYVPESES 495
           +  + L K  G S +E D++ +LF+ GD  +HP    I + L++L G   E+GY  +   
Sbjct: 562 ISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSF 621

Query: 496 AMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
            +H+++EE++ +SLRYHSE+ A+A+GL++   GM IR++KNLR+C DCHSAIK I+  T+
Sbjct: 622 VLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITS 681

Query: 556 REIIVRDRLRFHHFKRGSCSCLDYW 580
           REII+RD  RFHHFK G CSC DYW
Sbjct: 682 REIILRDANRFHHFKDGFCSCRDYW 706



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 151/338 (44%), Gaps = 71/338 (21%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM--RDFG- 202
           A +   A++ N++ AR  F+ MP ++  ++N++++GY +N     A+GLF  M  RD   
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 203 -------------VNPDSTTCVC----------------------VLAACAQL------- 220
                          PD+   +                       +LA   +L       
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER 141

Query: 221 ----------GDIDLGRWVHEF--IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
                     G +D GR V+E   +  +  D +VV  T++++ Y + G +++AR +FD M
Sbjct: 142 NHVSYTVLLGGLLDAGR-VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
            + NV++WTAMISGY  +G    A +LF  M       N V++ A+L     AG V++  
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAA 256

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
            +F +M +     P    +  MV  FG+ G+++ A K V + + E+     W+AM+ A +
Sbjct: 257 ELFNAMPEH----PVAACNAMMVG-FGQRGMVDAA-KTVFEKMCER-DDGTWSAMIKAYE 309

Query: 389 MHKNFDLGVEVAEHLL--SVEPENPGHYVMLSNIYALA 424
            ++     +     +L   V P  P    +L+   ALA
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALA 347



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/180 (19%), Positives = 81/180 (45%), Gaps = 5/180 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+ P+  +IL     L  L   ++VHA ++   +      ++ L+++    G +  A+R
Sbjct: 330 RPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKR 389

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F      D  ++N++I   ++      +L  +  M ++ +SP   T+   + +C++   
Sbjct: 390 VFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGK 449

Query: 122 LNLGRAVHCHVFV-SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMI 179
           +  GR +   + V S         + +V+   +S  V+ A  +   MP +   V W +++
Sbjct: 450 VKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM 509


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/612 (32%), Positives = 345/612 (56%), Gaps = 40/612 (6%)

Query: 8    SPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
            S  Y   LK   R+  +    ++H  LI  G+     +   L++       +  A ++F 
Sbjct: 523  SEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFH 582

Query: 65   CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK-SCAHLSILN 123
             +P+P++ L+N  II N ++      +  +R+M  S +     T   V++ S + L  LN
Sbjct: 583  EMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLN 642

Query: 124  LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS------ 177
            +G+  H +V  +G+D D++V  +L++ Y K++++  A+ VFD M ++++ AWNS      
Sbjct: 643  MGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYS 702

Query: 178  -----------------------------MISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
                                         MISGY   G  KEA+  F  M+  GV P+S 
Sbjct: 703  FKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSA 762

Query: 209  TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
            +  C+L ACA L  +  G+ +H   +  G   +V +AT+LI+MY++  ++  A ++F  +
Sbjct: 763  SITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRI 822

Query: 269  SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
                + +W  MI G+ + G G EA+ +F+ M+  GV P+ +TF A+LSAC ++GL+ EG 
Sbjct: 823  QNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGW 882

Query: 329  RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
            + F SM  +Y ++P +EH+ CMVDL GRAG L+EA+  +   +  KP   +W A+LG+C+
Sbjct: 883  KYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIH-TMPLKPDATIWGALLGSCR 941

Query: 389  MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGY 448
            +HKN       A++L  +EP N  +Y+++ N+Y++  R + ++ +R +M   G++    +
Sbjct: 942  IHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVW 1001

Query: 449  STVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYS 508
            S ++++Q+ ++FS  +K HP+  +IY  L +L+   ++ GYVP+       ++E E++  
Sbjct: 1002 SWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKI 1061

Query: 509  LRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHH 568
            L  H+EKLA+ +GL++   G  IR++KN R+C DCHSA K+IS+   RE+ +RD +RFHH
Sbjct: 1062 LLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHH 1121

Query: 569  FKRGSCSCLDYW 580
            F+ G CSC D+W
Sbjct: 1122 FREGKCSCNDFW 1133



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 1/149 (0%)

Query: 170 KSVVAWNSMISGYEQN-GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           ++ + WNS +  ++ + G     + +F  +   GV  DS      L  C ++ DI LG  
Sbjct: 485 RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 544

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H  ++ +G D++V L  +L+N Y RC  + KA ++F  M     + W   I        
Sbjct: 545 IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 604

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
             + VELF +M+   ++    T V VL A
Sbjct: 605 LQKGVELFRKMQFSFLKAETATIVRVLQA 633


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/550 (38%), Positives = 321/550 (58%), Gaps = 24/550 (4%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G I  A+++F  IP PD F +N ++           + LF+ +M V + +  N   S   
Sbjct: 51  GKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFS 110

Query: 114 KSCAH------LSILNLGRAVHCHVFVSGY----DSDLHVQ-------------AALVNF 150
           ++           ++ +  +V  +  +SGY    D DL  Q              A++  
Sbjct: 111 QNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITG 170

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
           + K   +++A K F+ MP K++V WN+MI+GY +N  A+  + LF  M + G  P+ ++ 
Sbjct: 171 FMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSL 230

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
             VL  C+ L  + LG+ VH+ I    +  N+   TSL++MY +CG++  A ++F +M +
Sbjct: 231 SSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQ 290

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            +V+ W AMISGY  HG G +A+ LF +MR  G++P+ +TFVAVLSAC HAG V  G   
Sbjct: 291 KDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEY 350

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           F SM ++YG+    +H+ C+VDL GR G L EA   +K  +  KP  A++  +LGAC++H
Sbjct: 351 FNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKK-MPFKPHSAIFGTLLGACRIH 409

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
           KN +L    A++LL+++PE+   YV L+N+YA   R D V +VR  M    + K  GYS 
Sbjct: 410 KNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSW 469

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLR 510
           +EV    + F  GD+ HP    I++ L+EL  + R AGYVP+ E A+H++ EE+++  L 
Sbjct: 470 IEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILL 529

Query: 511 YHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
            HSEKLA+A+GL+R   G  IR+ KNLR+C DCHSA K+IS    R IIVRD  RFHHF+
Sbjct: 530 RHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFR 589

Query: 571 RGSCSCLDYW 580
           +G CSC DYW
Sbjct: 590 QGECSCGDYW 599



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 127/235 (54%), Gaps = 7/235 (2%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFY 94
           RS    T +++     G I  A++ F  +P  +   +N +I   I N +A    + L  +
Sbjct: 159 RSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAE---NGLKLF 215

Query: 95  RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154
           +RM+ S   P+  + S+V+  C++LS L LG+ VH  +  S    ++    +L++ Y K 
Sbjct: 216 KRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKC 275

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
            +++ A K+F  MP K VV WN+MISGY Q+G  ++A+ LF+ MRD G+ PD  T V VL
Sbjct: 276 GDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVL 335

Query: 215 AACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           +AC   G +DLG  + +  +   G++      T ++++  R G + +A ++   M
Sbjct: 336 SACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKM 390



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 158/385 (41%), Gaps = 100/385 (25%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE-QNGFAKEAIGLFNLMRD---FG 202
           ++  + +S +++ A +VF+ M  K+ V WNSM++GY  + G  K A  LF+ + +   F 
Sbjct: 11  VITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDIFS 70

Query: 203 VN------------------------PDSTTCVCVLAACAQLGDIDLGR----------- 227
            N                         D+ +   +++  +Q G +D  R           
Sbjct: 71  YNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNS 130

Query: 228 --W---VHEFIVGQGLDV-----------NVVLATSLINMYARCGNVSKAREIFDMMSEL 271
             W   +  ++    LD+           +VV  T++I  + + G +  A + F+ M   
Sbjct: 131 VSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMK 190

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG---H 328
           N++ W AMI+GY  +      ++LF RM   G RPN  +  +VL  C++   ++ G   H
Sbjct: 191 NLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVH 250

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV-----KDVI------------ 371
           ++       + +  G      ++ ++ + G L +A+K       KDV+            
Sbjct: 251 QLICKSPVSWNITAGTS----LLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQH 306

Query: 372 ----------------GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL---SVEPENPG 412
                           G KP    + A+L AC      DLG+E    ++    VE + P 
Sbjct: 307 GAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAK-PD 365

Query: 413 HYVMLSNIYALAGRM-DRVEVVRNI 436
           HY  + ++    G++ + V++++ +
Sbjct: 366 HYTCVVDLLGRGGKLVEAVDLIKKM 390


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/587 (36%), Positives = 341/587 (58%), Gaps = 11/587 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQ 60
           +P    + + L A  RL+ L   +++HA++I      + S + + L+ +      +  A+
Sbjct: 116 RPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKAR 175

Query: 61  RIFFCIPSPDSFL--FNTLIIRNSKANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCA 117
           ++F  +P     L  +N +I   ++A    ++L  + RM   +   P   T ++V+ +CA
Sbjct: 176 QVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA 235

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
                    AVH +V   G   +  VQ AL++ YA+    DVAR++F  +    VV+WN+
Sbjct: 236 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 295

Query: 178 MISGYEQNGFAKEAIGLFNLMRDF---GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           +I+G    G   +A  L   M+     GV P++ T + +L  CA L     G+ +H + V
Sbjct: 296 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 355

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
              LD +V + ++L++MYA+CG ++ +R +FD +   N I W  +I  YGMHG G EA  
Sbjct: 356 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATV 415

Query: 295 LFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           LF RM A G  RPN VTF+A L+AC+H+G+V  G ++F +M +++G+ P  +   C+VD+
Sbjct: 416 LFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDI 475

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GRAG L+EAY  V  +   +   + W+ MLGAC++H+N  LG    E LL +EPE   H
Sbjct: 476 LGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASH 535

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+L NIY+ AG+  R   VR+ M ++G+ K  G S +EVD   + F  G+ +HP + E+
Sbjct: 536 YVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEV 595

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           + +++ L G     GY P++   +H++++ ++   LR HSEKLA+AFGL+R +PG TIR+
Sbjct: 596 HAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRV 655

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCH A KF+S    REI++RD  RFHHF+ G CSC DYW
Sbjct: 656 AKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 702



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 180/368 (48%), Gaps = 24/368 (6%)

Query: 7   HSPAYEAILKAGPRLKPLQQVHAHLIVAG--YGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           H PA  A ++ G      ++ HA  +  G  +G  R     LLS+    G +  AQR+F 
Sbjct: 22  HLPAAAAAVRLG------REAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFA 75

Query: 65  -CIPS-PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
              P   D   +NT++    ++    +++     M+   + P   TF++ + +C+ L +L
Sbjct: 76  GATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELL 135

Query: 123 NLGRAVHCHVFVSGYDSDL----HVQAALVNFYAKSNNVDVARKVFDRMPD--KSVVAWN 176
           ++GR +H +V     D +L     V +ALV+ YA    V  AR+VFD +PD  K +  WN
Sbjct: 136 DVGREMHAYVI---KDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWN 192

Query: 177 SMISGYEQNGFAKEAIGLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           +MI GY Q G  +EA+ LF  M  + G  P  TT   VL ACA+         VH ++V 
Sbjct: 193 AMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVK 252

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
           +G+  N  +  +L++MYAR G    AR IF M+   +V++W  +I+G  + G+  +A +L
Sbjct: 253 RGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQL 312

Query: 296 FHRMRA---HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
              M+     GV PN +T + +L  CA       G  +     + + L   V     +VD
Sbjct: 313 AREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVR-HALDTDVAVGSALVD 371

Query: 353 LFGRAGLL 360
           ++ + G L
Sbjct: 372 MYAKCGCL 379



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 153/326 (46%), Gaps = 21/326 (6%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHL----SILNLGRAVHCHVFVSGYDSDLHVQA-----AL 147
           M+      +++T  +V+++ +HL    + + LGR  H     +G    LH        AL
Sbjct: 1   MLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGL---LHGHQRFAFNAL 57

Query: 148 VNFYAKSNNVDVARKVF-DRMPDKS-VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           ++ YA+   V  A+++F    P +  VV WN+M+S   Q+G   EA+     M   GV P
Sbjct: 58  LSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRP 117

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG-LDVNVVLATSLINMYARCGNVSKAREI 264
           D  T    L AC++L  +D+GR +H +++    L  N  +A++L++MYA    V KAR++
Sbjct: 118 DGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQV 177

Query: 265 FDMM--SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHA 321
           FDM+  S   +  W AMI GY   G   EA+ LF RM A  G  P   T  +VL ACA +
Sbjct: 178 FDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARS 237

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
                G         + G+         ++D++ R G  + A +    V  + P    W 
Sbjct: 238 EAFA-GKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMV--DLPDVVSWN 294

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVE 407
            ++  C +  +     ++A  +  +E
Sbjct: 295 TLITGCVVQGHVADAFQLAREMQQLE 320


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/585 (35%), Positives = 343/585 (58%), Gaps = 7/585 (1%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFI 56
           M+   P +  + AI KA  +L  +   Q+ H   +V G       + + L+ +      +
Sbjct: 94  MEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKM 153

Query: 57  TYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC 116
             A  +F  +   D  LF  LI+  ++     ++L  +  M+   + P+ YT + ++ +C
Sbjct: 154 RDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILINC 213

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
            +L  L  G+ +H  V  SG +S +  Q +L+  Y++ N ++ + KVF+++   + V W 
Sbjct: 214 GNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWT 273

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
           S + G  QNG  + A+ +F  M    ++P+  T   +L AC+ L  +++G  +H   +  
Sbjct: 274 SFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKL 333

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
           GLD N     +LIN+Y +CGN+ KAR +FD+++EL+V+A  +MI  Y  +G+G EA+ELF
Sbjct: 334 GLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEALELF 393

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
            R++  G+ PN VTF+++L AC +AGLV+EG ++FAS+R  + +   ++H  CM+DL GR
Sbjct: 394 ERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGR 453

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
           +  L EA   +++V    P   +W  +L +CK+H   ++  +V   +L + P + G +++
Sbjct: 454 SRRLEEAAMLIEEV--RNPDVVLWRTLLNSCKIHGEVEMAEKVMSKILELAPGDGGTHIL 511

Query: 417 LSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQY 476
           L+N+YA AG+ ++V  +++ +    LKK    S V+VD++ + F  GD SHP + EI++ 
Sbjct: 512 LTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVHTFMAGDLSHPRSLEIFEM 571

Query: 477 LDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT-SPGMTIRIVK 535
           L  LM + +  GY P +   + +L+EE++  SL YHSEKLA+A+ L +T     TIRI K
Sbjct: 572 LHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSLYYHSEKLAIAYALWKTIGRTTTIRIFK 631

Query: 536 NLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           NLR+C DCHS IKF+S+ T R+II RD  RFHHFK G CSC DYW
Sbjct: 632 NLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHHFKGGLCSCKDYW 676



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 193/361 (53%), Gaps = 6/361 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLT-KLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           L  L+ VH ++I +G+  S S L  KL+      G +  A+++F  +PS     +N++I 
Sbjct: 17  LTTLRAVHTNVIKSGF--SYSFLGHKLIDGYIKCGSLAEARKLFDELPSRHIVTWNSMIS 74

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
            +     S +++ FY  M++  + P  YTFSA+ K+ + L ++  G+  H    V G + 
Sbjct: 75  SHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEV 134

Query: 140 -DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
            D  V +ALV+ YAK + +  A  VF R+ +K VV + ++I GY Q+G   EA+ +F  M
Sbjct: 135 LDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDM 194

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
            + GV P+  T  C+L  C  LGD+  G+ +H  +V  GL+  V   TSL+ MY+RC  +
Sbjct: 195 VNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMI 254

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
             + ++F+ +   N + WT+ + G   +G    AV +F  M    + PN  T  ++L AC
Sbjct: 255 EDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQAC 314

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           +   +++ G ++ A +  + GL         +++L+G+ G +++A + V DV+ E    A
Sbjct: 315 SSLAMLEVGEQIHA-ITMKLGLDGNKYAGAALINLYGKCGNMDKA-RSVFDVLTELDVVA 372

Query: 379 V 379
           +
Sbjct: 373 I 373



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 190/420 (45%), Gaps = 57/420 (13%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           +S++I   AH   L   RAVH +V  SG+     +   L++ Y K  ++  ARK+FD +P
Sbjct: 4   YSSLIAQSAHTKSLTTLRAVHTNVIKSGFSYSF-LGHKLIDGYIKCGSLAEARKLFDELP 62

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
            + +V WNSMIS +  +G +KEA+  +  M   GV PD+ T   +  A +QLG I  G+ 
Sbjct: 63  SRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQR 122

Query: 229 VHEFIVGQGLDV-NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            H   V  GL+V +  +A++L++MYA+   +  A  +F  + E +V+ +TA+I GY  HG
Sbjct: 123 AHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHG 182

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
              EA+++F  M   GV+PN  T   +L  C + G +  G  +   + +  GL   V   
Sbjct: 183 LDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKS-GLESVVASQ 241

Query: 348 VCMVDLFGRAGLLNEAYK---------------FVKDVIGE------------------K 374
             ++ ++ R  ++ ++ K               FV  ++                     
Sbjct: 242 TSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSIS 301

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY---VMLSNIYALAGRMDRVE 431
           P P   +++L AC      ++G ++  H ++++    G+      L N+Y   G MD+  
Sbjct: 302 PNPFTLSSILQACSSLAMLEVGEQI--HAITMKLGLDGNKYAGAALINLYGKCGNMDKAR 359

Query: 432 VVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVP 491
            V +++ +           V ++   Y ++     H           EL  R +  G VP
Sbjct: 360 SVFDVLTE--------LDVVAINSMIYAYAQNGFGHEAL--------ELFERLKNMGLVP 403


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/544 (38%), Positives = 322/544 (59%), Gaps = 19/544 (3%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  +  +F   P+ D   +NT+I    +  +   +L     M+      S  TFS  +
Sbjct: 214 GDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIAL 273

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD-------- 165
              + LS++ +GR +H  V   G +SD +++++LV  Y K   +D A  +          
Sbjct: 274 ILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLR 333

Query: 166 --------RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
                   + P   +V+W+SM+SGY  NG  ++ +  F  M    +  D  T   +++AC
Sbjct: 334 KGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISAC 393

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
           A  G ++ G+ +H +I   GL ++  + +SLI+MY++ G++  A  IF+ + E NV+ WT
Sbjct: 394 ANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWT 453

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           +MISG  +HG G EA+ LF  M   G+ PN VTFV VL+AC+H GL++EG R F  M+  
Sbjct: 454 SMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDT 513

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFV-KDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
           Y + P VEH+  MV+L+GRAG L EA  F+ ++ I      +VW + L +C++HKNF++G
Sbjct: 514 YHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISH--FTSVWRSFLSSCRLHKNFNMG 571

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQK 456
             V+E LL   P +P  Y++LSN+ +   + D   +VR++M Q+G+KK  G S V++  +
Sbjct: 572 KSVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQ 631

Query: 457 NYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKL 516
            + F++GD+SHP   EIY YLD L+GR +E GY  +++  M ++EEE+ E  + +HSEKL
Sbjct: 632 IHSFTVGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDAKLVMQDVEEEQGEVLISHHSEKL 691

Query: 517 ALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSC 576
           AL F ++ TSP   IRI+KNLR+C DCH+  K+ S    REIIVRD  RFHHFK+ SCSC
Sbjct: 692 ALVFSIINTSPRTPIRIMKNLRICNDCHNFFKYASQLLEREIIVRDTHRFHHFKQSSCSC 751

Query: 577 LDYW 580
            +YW
Sbjct: 752 GEYW 755



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/453 (21%), Positives = 206/453 (45%), Gaps = 53/453 (11%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +++QP S  +       P    L+ +H H    G  +  +    LL+L   +  + +A +
Sbjct: 31  RSRQPCSFLHSTTSIGSP--PSLRALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHK 88

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLL-FYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           +F  I   ++  +  LI   ++A  S++ +   +R M      P+ YT S+V+K C+  +
Sbjct: 89  LFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSREN 148

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM------------- 167
            +  G+ +H  +  +G   D+ ++ ++++ Y K    + A   F+ M             
Sbjct: 149 NIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIG 208

Query: 168 ------------------PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
                             P+K VV+WN++I G  Q G+ + A+     M   G      T
Sbjct: 209 AYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVT 268

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM- 268
               L   + L  +++GR +H  ++  GL+ +  + +SL+ MY +CG + KA  I   + 
Sbjct: 269 FSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVP 328

Query: 269 ---------------SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
                           +  +++W++M+SGY  +G   + ++ F  M    +  +  T   
Sbjct: 329 LNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVAT 388

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           ++SACA+AG+++ G ++ A + Q+ GL         ++D++ ++G L++A    + +  +
Sbjct: 389 IISACANAGILEFGKQIHAYI-QKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQI--K 445

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406
           +P   +WT+M+  C +H      + + E +L++
Sbjct: 446 EPNVVLWTSMISGCALHGQGKEAISLFEGMLNL 478



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 147/317 (46%), Gaps = 40/317 (12%)

Query: 93  FYRRMIVSNISPSNYTF-SAVIKSCAHL-SILNLG-----RAVHCHVFVSGYDSDLHVQA 145
           F + + V+N    N+ F S   + C+ L S  ++G     RA+H H F  G    L+   
Sbjct: 12  FTKHVSVTNFHIVNFPFHSRSRQPCSFLHSTTSIGSPPSLRALHGHYFKKGSLQILNSAN 71

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI-GLFNLMRDFGVN 204
            L+  Y KS+N+D A K+FD +  K+   W  +ISG+ +   + E +  LF  M+  G  
Sbjct: 72  YLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGAC 131

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T   VL  C++  +I  G+ +H +I+  G+  +VVL  S++++Y +C     A   
Sbjct: 132 PNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESF 191

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR-------------------------- 298
           F++M E +V++W  MI  Y   G   +++E+F                            
Sbjct: 192 FELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLAL 251

Query: 299 -----MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
                M AHG   + VTF   L   +   LV+ G ++   +   +GL         +V++
Sbjct: 252 EQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLT-FGLNSDGYIRSSLVEM 310

Query: 354 FGRAGLLNEAYKFVKDV 370
           +G+ G +++A   +KDV
Sbjct: 311 YGKCGRMDKASTILKDV 327


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/587 (36%), Positives = 341/587 (58%), Gaps = 11/587 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQ 60
           +P    + + L A  RL+ L   +++HA++I      + S + + L+ +      +  A+
Sbjct: 268 RPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKAR 327

Query: 61  RIFFCIPSPDSFL--FNTLIIRNSKANFSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCA 117
           ++F  +P     L  +N +I   ++A    ++L  + RM   +   P   T ++V+ +CA
Sbjct: 328 QVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA 387

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
                    AVH +V   G   +  VQ AL++ YA+    DVAR++F  +    VV+WN+
Sbjct: 388 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 447

Query: 178 MISGYEQNGFAKEAIGLFNLMRDF---GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           +I+G    G   +A  L   M+     GV P++ T + +L  CA L     G+ +H + V
Sbjct: 448 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 507

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
              LD +V + ++L++MYA+CG ++ +R +FD +   N I W  +I  YGMHG G EA  
Sbjct: 508 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATV 567

Query: 295 LFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           LF RM A G  RPN VTF+A L+AC+H+G+V  G ++F +M +++G+ P  +   C+VD+
Sbjct: 568 LFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDI 627

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
            GRAG L+EAY  V  +   +   + W+ MLGAC++H+N  LG    E LL +EPE   H
Sbjct: 628 LGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASH 687

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           YV+L NIY+ AG+  R   VR+ M ++G+ K  G S +EVD   + F  G+ +HP + E+
Sbjct: 688 YVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEV 747

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
           + +++ L G     GY P++   +H++++ ++   LR HSEKLA+AFGL+R +PG TIR+
Sbjct: 748 HAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRV 807

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCH A KF+S    REI++RD  RFHHF+ G CSC DYW
Sbjct: 808 AKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 177/396 (44%), Gaps = 43/396 (10%)

Query: 39  SRSMLTKLLSLVCDAGFITYAQRIFFCIPSP--DSFLFNTLIIRNSKANFSTDSLLFYRR 96
           S ++   LL+     G +  A  +F  I     D+  FN+LI           +L  +RR
Sbjct: 93  SPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLI----------SALCLFRR 142

Query: 97  ----------MIVSNISPSNYTFSAVIKSCAHL----SILNLGRAVHCHVFVSGYDSDLH 142
                     M+      +++T  +V+++ +HL    + + LGR  H     +G    LH
Sbjct: 143 WDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGL---LH 199

Query: 143 VQA-----ALVNFYAKSNNVDVARKVF-DRMPDKS-VVAWNSMISGYEQNGFAKEAIGLF 195
                   AL++ YA+   V  A+++F    P +  VV WN+M+S   Q+G   EA+   
Sbjct: 200 GHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTL 259

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG-LDVNVVLATSLINMYAR 254
             M   GV PD  T    L AC++L  +D+GR +H +++    L  N  +A++L++MYA 
Sbjct: 260 YDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYAT 319

Query: 255 CGNVSKAREIFDMM--SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVRPNNVTF 311
              V KAR++FDM+  S   +  W AMI GY   G   EA+ LF RM A  G  P   T 
Sbjct: 320 HEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTM 379

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
            +VL ACA +     G         + G+         ++D++ R G  + A +    V 
Sbjct: 380 ASVLPACARSEAFA-GKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMV- 437

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
            + P    W  ++  C +  +     ++A  +  +E
Sbjct: 438 -DLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLE 472


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/542 (40%), Positives = 326/542 (60%), Gaps = 16/542 (2%)

Query: 48  SLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV---SNISP 104
           S V D  F   ++ +F  IP      + ++I    + + + D++  ++ ++V    ++  
Sbjct: 21  SEVTDPFFGNDSRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVES 80

Query: 105 SNYTF-SAVIKSCAHLSILNLG-----RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158
            +  F  +V+  C   +   LG       VH  V   G++  + V   L++ YAK   + 
Sbjct: 81  EDGVFVDSVLLGCVVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMG 140

Query: 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
           VA KVFD M +     WNS+I+ Y QNG + EA  +F  M    V   +     V+    
Sbjct: 141 VA-KVFDGMNESDHYFWNSVIAEYAQNGLSAEAFSVFGDM----VKSGNFRYNAVIMDXG 195

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
             G + LG+ +H  ++   L+ +V + TS++++Y +C  V  AR+ FD M   NV +WTA
Sbjct: 196 LSGALQLGKCIHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTA 255

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           M++GYGMHG   EA+E+F++M   GV+PN +TFV+VL+AC+HAG+++EG   F  M+ E+
Sbjct: 256 MVAGYGMHGRAKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEF 315

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
            + PG+EH++CMVDL GRAG L   Y  +K+ +  KP   +W ++LGAC++HKN +LG  
Sbjct: 316 IVEPGIEHYLCMVDLLGRAGYLX-CYGLIKE-MNAKPDFIIWGSLLGACRIHKNVELGEI 373

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458
            A  L  ++  N G+YV+LSNIYA AGR D VE +R +M  +GL K  G+S VE+  + +
Sbjct: 374 SARKLFELDXSNCGYYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIH 433

Query: 459 LFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLAL 518
           +  +GDK HP   +IY+YLD+   + +E GY+P     +H+++EEE+   LR HSEKLA+
Sbjct: 434 VLLVGDKEHPQHEKIYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAV 493

Query: 519 AFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLD 578
           AFG+M + PG  I I+KNLR+C DC+  IK I    NREI+VRD  RFHHFK GSCSC D
Sbjct: 494 AFGIMNSVPGSIIHIIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGD 553

Query: 579 YW 580
           YW
Sbjct: 554 YW 555


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/539 (39%), Positives = 328/539 (60%), Gaps = 16/539 (2%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIV---SNISPSNYTF 109
           +TYA R+F   P+P+SF++NTLI    R++  N    ++  Y+ M+        P N+TF
Sbjct: 75  LTYATRVFHHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTF 134

Query: 110 SAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD 169
             V+K+CA+   L  G+ VH HV   G++SD ++  +LV+FYA    +D+A K+F +M +
Sbjct: 135 PIVLKACAYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSE 194

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           ++ V+WN MI  Y + G    A+ +F  M+    +PD  T   V++ACA LG + LG WV
Sbjct: 195 RNEVSWNIMIDSYAKGGIFDTALRMFGEMQRVH-DPDGYTMQSVISACAGLGALSLGLWV 253

Query: 230 HEFIV---GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
           H +I+    + +  +V++ T L++MY + G +  A+++F+ M+  ++ AW +MI G  MH
Sbjct: 254 HAYILKKCDKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMH 313

Query: 287 GYGTEAVELFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           G    A+  + RM +   + PN++TFV VLSAC H G+V EG   F  M +EY + P +E
Sbjct: 314 GEAKAALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLE 373

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC-KMHKNFDLGVEVAEHLL 404
           H+ C+VDLF RAG +NEA   V + +  KP   +W ++L AC K + + +L  E+A+ + 
Sbjct: 374 HYGCLVDLFARAGRINEALNLVSE-MSIKPDAVIWRSLLDACCKQYASVELSEEMAKQVF 432

Query: 405 SVEPE--NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
             E    + G YV+LS +YA A R + V ++R +M +KG+ K  G S +E+D   + F  
Sbjct: 433 ESEGSVCSSGVYVLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFA 492

Query: 463 GDKSHPNTNEIYQYLDELMGRCREAGYVPE-SESAMHELEEEEREYSLRYHSEKLALAFG 521
           GD +HP +  IY+ + E+  +    GY+P+ S + M +   + +  +LR HSE+LA+AFG
Sbjct: 493 GDTTHPKSENIYKVVTEIEEKLESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFG 552

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           ++ + P + IR+ KNLR+C DCH   K IS   N EIIVRDR RFHHFK G+CSC+DYW
Sbjct: 553 ILNSKPDVPIRVFKNLRVCNDCHRVTKLISRIYNVEIIVRDRARFHHFKDGTCSCMDYW 611



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 144/291 (49%), Gaps = 12/291 (4%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           K   P +  +  +LKA      L   +QVHAH++  G+     +   L+      G +  
Sbjct: 125 KTAVPDNHTFPIVLKACAYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDL 184

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+++F+ +   +   +N +I   +K      +L  +  M   +  P  YT  +VI +CA 
Sbjct: 185 AEKMFYKMSERNEVSWNIMIDSYAKGGIFDTALRMFGEMQRVH-DPDGYTMQSVISACAG 243

Query: 119 LSILNLGRAVHCHVFV---SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           L  L+LG  VH ++          D+ V   LV+ Y KS  +++A++VF+ M  + + AW
Sbjct: 244 LGALSLGLWVHAYILKKCDKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAW 303

Query: 176 NSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           NSMI G   +G AK A+  +  +++   + P+S T V VL+AC   G +D G  VH  ++
Sbjct: 304 NSMILGLAMHGEAKAALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEG-IVHFDMM 362

Query: 235 GQGLDVNVVLA--TSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISG 282
            +  +V   L     L++++AR G +++A  +   MS + + + W +++  
Sbjct: 363 TKEYNVEPRLEHYGCLVDLFARAGRINEALNLVSEMSIKPDAVIWRSLLDA 413



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 126/266 (47%), Gaps = 13/266 (4%)

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQN---GFAKEAIGLFN---LMRDFGVNPDSTT 209
           N+  A +VF   P+ +   WN++I  Y ++       +A+ L+     M +    PD+ T
Sbjct: 74  NLTYATRVFHHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHT 133

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
              VL ACA    +  G+ VH  ++  G + +  +  SL++ YA CG +  A ++F  MS
Sbjct: 134 FPIVLKACAYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMS 193

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
           E N ++W  MI  Y   G    A+ +F  M R H   P+  T  +V+SACA  G +  G 
Sbjct: 194 ERNEVSWNIMIDSYAKGGIFDTALRMFGEMQRVHD--PDGYTMQSVISACAGLGALSLGL 251

Query: 329 RVFASM--RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
            V A +  + +  ++  V  + C+VD++ ++G L E  K V + +  +   A W +M+  
Sbjct: 252 WVHAYILKKCDKNMVDDVLVNTCLVDMYCKSGEL-EIAKQVFESMAFRDLNA-WNSMILG 309

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPG 412
             MH      +     ++ VE   P 
Sbjct: 310 LAMHGEAKAALNYYVRMVKVEKIVPN 335


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/555 (36%), Positives = 323/555 (58%), Gaps = 29/555 (5%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           QVH  ++ +G+G +  + + L+ +    G ++ A+R+   +   D   +N++I+   +  
Sbjct: 261 QVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQG 320

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
              ++L  +R M + ++    +T+ +V+   + +  +    +VH  +  +G+++   V  
Sbjct: 321 LGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNN 380

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           ALV+ YAK    D A  VF++M DK V++W S+++G   NG  +EA+ LF  MR  G++P
Sbjct: 381 ALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHP 440

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           D      VL+ACA+L  ++ G+ VH   +  GL  ++ +  SL++MYA+CG +  A ++F
Sbjct: 441 DQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVF 500

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D M   +VI WTA+I GY  +G G +                            HAGLV+
Sbjct: 501 DSMEIQDVITWTALIVGYAQNGRGRD----------------------------HAGLVE 532

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            G   F SM + YG+ PG EH+ CM+DL GR+G L EA + +   +  +P   VW A+L 
Sbjct: 533 HGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQ-MAVQPDATVWKALLA 591

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           AC++H N +LG   A +L  +EP+N   YV+LSN+Y+ AG+ +     R +M  +G+ K 
Sbjct: 592 ACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKE 651

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
            G S +E+  K + F   D+SHP T EIY  +DE+M   +EAGYVP+   A+H+++EE +
Sbjct: 652 PGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGK 711

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
           E  L YHSEKLA+AFGL+   PG  IRI KNLR+C DCH+A+K++S   +R +I+RD   
Sbjct: 712 ELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNC 771

Query: 566 FHHFKRGSCSCLDYW 580
           FHHF+ G+CSC DYW
Sbjct: 772 FHHFREGACSCSDYW 786



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 171/367 (46%), Gaps = 36/367 (9%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           R       ++    ++G +  A+++F+  P      +++LI    +     ++L  +  M
Sbjct: 70  RDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEM 129

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
                 P+ +T+ +V++ C+   +L  G+ +H H   + +DS+  V   LV+ YAK   +
Sbjct: 130 QYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCI 189

Query: 158 DVARKVFDRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
             A  +F+  PDK + V W +M++GY QNG   +AI  F  MR  G+  +  T   +L A
Sbjct: 190 LEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTA 249

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C  +     G  VH  IV  G   NV + ++L++MY++CG++S AR + + M   + ++W
Sbjct: 250 CGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSW 309

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA-----------CAHAGLVQ 325
            +MI G    G G EA+ LF  M    ++ +  T+ +VL+              H+ +V+
Sbjct: 310 NSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVK 369

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAVW 380
            G   +  +               +VD++ + G  + A+        KDVI        W
Sbjct: 370 TGFEAYKLVNNA------------LVDMYAKRGYFDYAFDVFEKMTDKDVIS-------W 410

Query: 381 TAMLGAC 387
           T+++  C
Sbjct: 411 TSLVTGC 417



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 144/318 (45%), Gaps = 47/318 (14%)

Query: 107 YTFSAVIKSCAHLSILNLGRAVH-----CHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           YTFS   K C  L    L   +      C    S  DS+      +++  +K   VD AR
Sbjct: 9   YTFSR--KVCHQLEHTELNHHIRRFVNSCGTVHSSSDSNW-----VLSNLSKCGRVDDAR 61

Query: 162 KVFDRMPD-------------------------------KSVVAWNSMISGYEQNGFAKE 190
           K+FD MPD                               +S + W+S+ISGY + G   E
Sbjct: 62  KLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVE 121

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ LF  M+  G  P+  T   VL  C+    ++ G+ +H   +    D N  + T L++
Sbjct: 122 ALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVD 181

Query: 251 MYARCGNVSKAREIFDMMSE-LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           MYA+C  + +A  +F++  +  N + WTAM++GY  +G G +A+E F  MR  G+  N  
Sbjct: 182 MYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQF 241

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           TF ++L+AC        G +V   + +  G    V     +VD++ + G L+ A + ++ 
Sbjct: 242 TFPSILTACGSISACGFGAQVHGCIVRS-GFGANVFVGSALVDMYSKCGDLSNARRMLET 300

Query: 370 VIGEKPAPAVWTAMLGAC 387
           +  E   P  W +M+  C
Sbjct: 301 M--EVDDPVSWNSMIVGC 316


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/563 (39%), Positives = 331/563 (58%), Gaps = 11/563 (1%)

Query: 27  VHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           VH  L      RS   L T+L+      G +  A+++F   P  + F++N L+   + A+
Sbjct: 94  VHRRLEADPVFRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALAD 153

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSC-----AHLSILNLGRAVHCHVFVSGYDSD 140
              ++L     M    +   +Y+++  +K+C     +H       R VH H    GY   
Sbjct: 154 HGDEALARLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALH 213

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM-- 198
            HV   L++ YAK   V  A  VF  MP+++VV+W++MI  Y +N    +AI LF  M  
Sbjct: 214 THVATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMA 273

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
            D  + P+S T V VL ACA +  +  G+ +H +I+ +G D  V +  +L+ MY RCG +
Sbjct: 274 SDADLVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCL 333

Query: 259 SKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
              R IF  +    +V++W ++ISGYGMHG+G EAV++F  M   G  P+ +TF++VL A
Sbjct: 334 EVGRHIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGA 393

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           C+HAGLV EG  +F SM  EYG+ P  EH+ CMVDL GRAG L+EA + ++ +  E P+P
Sbjct: 394 CSHAGLVNEGKMLFESM-VEYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIE-PSP 451

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
            VW A+LGAC++H + +       HL  +EP N G+YV+L++IYA A   ++V V++ ++
Sbjct: 452 QVWGALLGACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELL 511

Query: 438 IQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM 497
            +  L+K  G S +EV +K + F+  D  +P   ++   + E + + +  GYVP++   +
Sbjct: 512 EEHALEKVTGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVL 571

Query: 498 HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNRE 557
           +++E EE+E  L  HSEKLA+AFGL+ T  G  IRI KNLR+C DCHS  KFIS  T RE
Sbjct: 572 YDIEGEEKERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTERE 631

Query: 558 IIVRDRLRFHHFKRGSCSCLDYW 580
           I+VRD  RFHHF+ G CSC DYW
Sbjct: 632 IVVRDVNRFHHFRDGVCSCGDYW 654


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/449 (42%), Positives = 290/449 (64%), Gaps = 1/449 (0%)

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           VF      DL     +++ YA   +V +AR++FD   D+   +W+SMIS Y +   +KEA
Sbjct: 138 VFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEA 197

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           + L+  MR  GV PD  + V VL+AC+ +G + +G  VH F+    ++V++ L T+L++M
Sbjct: 198 LELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDM 257

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           YA+CG++  + ++F  M   +V+ W++MI G   HG G +A+ LF  M + G++PN +TF
Sbjct: 258 YAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITF 317

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           + VL AC H GLV +G + F+SM   +G++P +EH+ CMVDL GRAG + EA + ++ + 
Sbjct: 318 IGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMT 377

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
             KP P +W  +LGAC++HKN ++  E    L  ++P   GHYV+LSNIYA A   + V 
Sbjct: 378 F-KPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVA 436

Query: 432 VVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVP 491
            +R  + ++ +++  G S++E +   + F  GD+SHP   EIY+ L+E+M R R+AGY P
Sbjct: 437 EMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRP 496

Query: 492 ESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFIS 551
            +   + +++E+ ++ +L  HSEKLA+AFGL+ T    T+RI KNLR C DCHSAIK IS
Sbjct: 497 MTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLIS 556

Query: 552 VATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +A +R++IVRDR RFHHF  G CSC DYW
Sbjct: 557 LAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 123/235 (52%), Gaps = 2/235 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+ IF      D+F ++++I   +K   S ++L  +R M V+ ++P   +  +V+
Sbjct: 161 GDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVL 220

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV 173
            +C+ +  L +G  VH  V  +  + D+ +  ALV+ YAK  +++ + KVF  MP K V+
Sbjct: 221 SACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVL 280

Query: 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEF 232
            W+SMI G   +G   +A+ LF+ M   G+ P+  T + VL AC  +G ++ G ++    
Sbjct: 281 TWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSM 340

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
               G+   +     ++++  R G+V +A E+   M+ + + I W  ++    +H
Sbjct: 341 SDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIH 395



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 50/183 (27%)

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG---------YGT- 290
           +V L   ++  Y   G V++AR++FD MS  ++++W  MI GY + G          GT 
Sbjct: 115 DVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTR 174

Query: 291 ---------------------EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG-- 327
                                EA+EL+  MR  GV P+ ++ V+VLSAC+  G +  G  
Sbjct: 175 DRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAE 234

Query: 328 -HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-----VKDVIGEKPAPAVWT 381
            HR   S R E  +  G      +VD++ + G +  + K      VKDV+        W+
Sbjct: 235 VHRFVESNRVEVDMKLG----TALVDMYAKCGDIENSLKVFHAMPVKDVL-------TWS 283

Query: 382 AML 384
           +M+
Sbjct: 284 SMI 286



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/162 (20%), Positives = 74/162 (45%), Gaps = 9/162 (5%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L+ +    G I  + ++F  +P  D   ++++II  +      D+L  +  MI   + 
Sbjct: 252 TALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQ 311

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVF-VSGYDSDLHVQAALVNFYAKSNNVDVARK 162
           P+  TF  V+ +C H+ ++N G+     +  V G    +     +V+   ++ +V+ A +
Sbjct: 312 PNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAME 371

Query: 163 VFDRM---PDKSVVAWNSMISG---YEQNGFAKEAIGLFNLM 198
           +   M   PD   + W +++     ++    A+EA+    ++
Sbjct: 372 LIRSMTFKPDP--IIWRTLLGACRIHKNVEIAEEAMAKLKVL 411


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/497 (40%), Positives = 293/497 (58%), Gaps = 41/497 (8%)

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           +C+++  L  G+ VH     +G   + +V  AL+  Y K  ++   R++FDRM  K  V+
Sbjct: 427 ACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVS 486

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ--------------- 219
           +NS +S   QN    EA  +FN M     +PD  +   +++ACAQ               
Sbjct: 487 YNSFMSALVQNNLFDEARDVFNNM----PSPDVVSWTTIISACAQADQGNEAVEIFRSML 542

Query: 220 --------------------LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
                               LG   LG+ +H   +  G+D  +V+A +L++MY +C +  
Sbjct: 543 HERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSAD 602

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
             + +FD M E ++  W  +I+GY  HG G EA+ ++  M + GV PN VTFV +L AC+
Sbjct: 603 SLK-VFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACS 661

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H+GLV EGH+ F SM  +YGL P +EH+ CMVDL GRAG +  A  F+ D+  E P   +
Sbjct: 662 HSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIE-PDSVI 720

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W+A+LGACK+HKN ++G   AE L S+EP N G+YVMLSNIY+  G  D V  VR +M +
Sbjct: 721 WSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKE 780

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           +G+ K  G S +++  K + F  GD+ H     IY  L EL    +  GYVP+++  +H+
Sbjct: 781 RGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLHD 840

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           ++EE++E SL YHSEKLA+A+GL+ T  GM I+I+KNLR+C DCH+ IKF+S  T REI 
Sbjct: 841 IDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSSVTKREID 900

Query: 560 VRDRLRFHHFKRGSCSC 576
           VRD  RFHHF+ GSCSC
Sbjct: 901 VRDGNRFHHFRNGSCSC 917



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 147/299 (49%), Gaps = 16/299 (5%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
            +S +        A+ +F  +PSPD   + T+I   ++A+   +++  +R M+     P+
Sbjct: 490 FMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPN 549

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
               + ++    +L    LG+ +H      G DS L V  ALV+ Y K ++ D + KVFD
Sbjct: 550 PPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSAD-SLKVFD 608

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            M ++ +  WN++I+GY Q+G  +EAI ++ LM   GV P+  T V +L AC+  G +D 
Sbjct: 609 SMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDE 668

Query: 226 GRWVHEFIVGQGLDVNVVLATS----LINMYARCGNVSKARE-IFDMMSELNVIAWTAMI 280
           G   H+F      D  +         ++++  R G+V  A   I+DM  E + + W+A++
Sbjct: 669 G---HQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALL 725

Query: 281 SGYGMHGYGTEAVELFHRM--RAHGVRPNNV-TFVAVLSACAHAGLVQEGHRVFASMRQ 336
               +H    + VE+  R   +   + P+N   +V + +  +  G+  E  +V   M++
Sbjct: 726 GACKIH----KNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKE 780



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 166/339 (48%), Gaps = 16/339 (4%)

Query: 6   PHSPAYEAILKAGPRL-KP--LQQVHAHLIVAGYGRSRSMLTKLLS-LVCDAGFITYAQR 61
           P  P   ++L A   L KP  L+ +H  +   G+ R   + T +L+    D   +  A +
Sbjct: 221 PEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVK 280

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            F  + + + + ++T+I   S+A    D+   Y+R  + ++ PS    ++++   A    
Sbjct: 281 FFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSV-PSR---TSMLTGLARYGR 336

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           ++  + +    F   ++ ++    A++  Y ++  VD A  +F+RMP ++ ++W  MI+G
Sbjct: 337 IDDAKIL----FDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAG 392

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y +NG +++A+     +   G+ P  ++      AC+ +  ++ G+ VH   V  G   N
Sbjct: 393 YARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFN 452

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +  +LI +Y +  ++   R+IFD M+  + +++ + +S    +    EA ++F+ M +
Sbjct: 453 SYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPS 512

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
               P+ V++  ++SACA A    E   +F SM  E  L
Sbjct: 513 ----PDVVSWTTIISACAQADQGNEAVEIFRSMLHEREL 547



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/438 (21%), Positives = 184/438 (42%), Gaps = 44/438 (10%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           R  S    +L+  C +  +  A+ +F  +P  +   +  +I           +   +R M
Sbjct: 155 RDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTM 214

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS-NN 156
           +   ++P      +V+ +  HL    +  ++H  V  +G++ D+ V  A++N Y K  N 
Sbjct: 215 LCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNM 274

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           +D A K F+ M  ++   W+++I+   Q G   +A  ++   RD   +  S T   +L  
Sbjct: 275 LDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQ--RDPLKSVPSRT--SMLTG 330

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
            A+ G ID  +     +  Q  + NVV   ++I  Y +   V +A ++F+ M   N I+W
Sbjct: 331 LARYGRIDDAK----ILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISW 386

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
             MI+GY  +G   +A+     +   G+ P+  +  +   AC++   ++ G +V  S+  
Sbjct: 387 AGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVH-SLAV 445

Query: 337 EYGLLPGVEHHVC--MVDLFGR---------------------------AGLLNEAYKFV 367
           + G       +VC  ++ L+G+                           A + N  +   
Sbjct: 446 KAGC--QFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEA 503

Query: 368 KDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLL-SVEPENPGHYVMLSNIYALA 424
           +DV    P+P V  WT ++ AC      +  VE+   +L   E  NP    +L  +    
Sbjct: 504 RDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNL 563

Query: 425 GRMDRVEVVRNIMIQKGL 442
           G     + +  I I+ G+
Sbjct: 564 GAPQLGQQIHTIAIKLGM 581



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 31/206 (15%)

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK------EAIGLFNL 197
           Q+A +    +   +  AR+VFD MP + ++AWNSMI  Y  NG         +AI   NL
Sbjct: 36  QSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNL 95

Query: 198 ---------------MRDF-----GVNPDSTTCVCVLAAC-AQLGDIDLGRWVHEFIVGQ 236
                          +RD      G+   +T     +  C  Q GDI L R + + +  +
Sbjct: 96  RTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSR 155

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
               +V    +++  Y     + +AR +F+ M E N ++WT MISGY +      A ++F
Sbjct: 156 ----DVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMF 211

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAG 322
             M   G+ P     V+VLSA  H G
Sbjct: 212 RTMLCEGMTPEQPNLVSVLSAVRHLG 237


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/579 (35%), Positives = 339/579 (58%), Gaps = 5/579 (0%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P   A+ + ++A   L  ++   Q+H   +  G G    + + L  +    G +  A ++
Sbjct: 39  PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKV 98

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P  D   +  +I   SK     ++LL +++MI   ++   +   + + +C  L   
Sbjct: 99  FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKAC 158

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-KSVVAWNSMISG 181
             GR+VH  V   G++SD+ V  AL + Y+K+ +++ A  VF    + ++VV++  +I G
Sbjct: 159 KFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDG 218

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y +    ++ + +F  +R  G+ P+  T   ++ ACA    ++ G  +H  ++    D +
Sbjct: 219 YVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDED 278

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +++ L++MY +CG + +A + FD + +   IAW +++S +G HG G +A+++F RM  
Sbjct: 279 PFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVD 338

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV+PN +TF+++L+ C+HAGLV+EG   F SM + YG++PG EH+ C++DL GRAG L 
Sbjct: 339 RGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLK 398

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA +F+  +  E P    W + LGAC++H + ++G   AE L+ +EP+N G  V+LSNIY
Sbjct: 399 EAKEFINRMPFE-PNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIY 457

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A   + + V  VR  M    +KK  GYS V+V  K ++F   D SHP  + IY+ LD L+
Sbjct: 458 ANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLL 517

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            + + AGYVP ++S   ++++  +E  L  HSE++A+AF L+    G  I + KNLR+CV
Sbjct: 518 DQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCV 577

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSAIKFIS  T R+IIVRD  RFHHF  GSCSC DYW
Sbjct: 578 DCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 1/197 (0%)

Query: 167 MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
           MP +++V+W +MISG  QN    EAI  F  MR  G  P        + ACA LG I++G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
           + +H   +  G+   + + ++L +MY++CG +  A ++F+ M   + ++WTAMI GY   
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
           G   EA+  F +M    V  +     + L AC      + G  V +S+ +  G    +  
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK-LGFESDIFV 179

Query: 347 HVCMVDLFGRAGLLNEA 363
              + D++ +AG +  A
Sbjct: 180 GNALTDMYSKAGDMESA 196


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/642 (33%), Positives = 345/642 (53%), Gaps = 68/642 (10%)

Query: 6   PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P    + +++     +  L Q+HA +I+     S  + T+L+S       I ++  +F  
Sbjct: 79  PTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNH 138

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
               + F FN LI   +  +   +++  +R M+ S I P   T+  V+KS A L    LG
Sbjct: 139 HKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELG 198

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR------------------- 166
            A+HC +   G + D  V+ +LV+ Y K   +  A KVFD                    
Sbjct: 199 MAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIK 258

Query: 167 -----------------MPDKSVVAWNSMISGYEQN------------------------ 185
                            MP K  V+W+++I G+ +N                        
Sbjct: 259 GCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTM 318

Query: 186 --GFAK-----EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
             GF++     +A+ +F+ M + GV P++ T V  L+ACA++G ++ G  +H++I   GL
Sbjct: 319 VDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGL 378

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
            +   L T+L++MYA+CGN+  A E+F    + ++  WT MI G+ +HG+  +A+  F +
Sbjct: 379 HLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQ 438

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M   G++P+ V F+A+L+AC H+G V  G   F SMR +Y + P ++H+  +VD+ GR+G
Sbjct: 439 MMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSG 498

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
            L EA +F+ + +   P   +W A+  AC+ HK   +       LL +EP + G+Y+ LS
Sbjct: 499 QLKEALRFI-ERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLS 557

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           N YA  G+ +  E VR +M  +G+ K+ G+S +EV+ + + F  GD  H ++  I   L+
Sbjct: 558 NAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLE 617

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           E+M    + GY+P +E  +H +E+EE+E  L  H EKLALAF L+ TSPGMTIRIVKNL+
Sbjct: 618 EIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQ 677

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCHS +K+ S  + REI++RD  RFHHFK GSCSC D+W
Sbjct: 678 VCGDCHSLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/571 (38%), Positives = 335/571 (58%), Gaps = 45/571 (7%)

Query: 53  AGFITYAQRIFFCIP-SPDSFLFNTLIIRNSKANFST----DSLLFYRRMIVSNISPSNY 107
           A  I YA  IF       +SFL+N +IIR    N S+      +  Y RM    +SP  +
Sbjct: 5   AAIIAYANPIFHIRHLKLESFLWN-IIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFH 63

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL-------------------- 147
           TF  ++ S  +   L LG+  H  + + G D D  V+ +L                    
Sbjct: 64  TFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDS 123

Query: 148 -----------VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN 196
                      VN YAK+  +D ARK+FD MP+++V++W+ +I+GY   G  KEA+ LF 
Sbjct: 124 GSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFR 183

Query: 197 LMR-----DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
            M+     +  V P+  T   VL+AC +LG ++ G+WVH +I    +++++VL T+LI+M
Sbjct: 184 EMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDM 243

Query: 252 YARCGNVSKAREIFDMM-SELNVIAWTAMISGYGMHGYGTEAVELFHRMR-AHGVRPNNV 309
           YA+CG++ +A+ +F+ + S+ +V A++AMI    M+G   E  +LF  M  +  + PN+V
Sbjct: 244 YAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSV 303

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           TFV +L AC H GL+ EG   F  M +E+G+ P ++H+ CMVDL+GR+GL+ EA  F+  
Sbjct: 304 TFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIAS 363

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
           +  E P   +W ++L   +M  +        + L+ ++P N G YV+LSN+YA  GR   
Sbjct: 364 MPME-PDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWME 422

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
           V+ +R+ M  KG+ K  G S VEV+   + F +GD+S   +  IY  LDE+M R REAGY
Sbjct: 423 VKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGY 482

Query: 490 VPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKF 549
           V +++  + +L E+++E +L YHSEKLA+AF LM+T PG  +RI+KNLR+C DCH  +K 
Sbjct: 483 VTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKM 542

Query: 550 ISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           IS   +REI+VRD  RFHHF+ GSCSC D+W
Sbjct: 543 ISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 140/306 (45%), Gaps = 41/306 (13%)

Query: 23  PL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           PL Q+ HA +++ G  +   + T LL++    G +  AQR+F    S D   +N+++   
Sbjct: 79  PLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAY 138

Query: 82  SKANFSTDSLLFYRRMIVSN------------------------------------ISPS 105
           +KA    D+   +  M   N                                    + P+
Sbjct: 139 AKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPN 198

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            +T S V+ +C  L  L  G+ VH ++     + D+ +  AL++ YAK  +++ A++VF+
Sbjct: 199 EFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFN 258

Query: 166 RM-PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVNPDSTTCVCVLAACAQLGDI 223
            +   K V A+++MI      G   E   LF+ M     +NP+S T V +L AC   G I
Sbjct: 259 ALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLI 318

Query: 224 DLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMIS 281
           + G+   + ++ + G+  ++     ++++Y R G + +A   I  M  E +V+ W +++S
Sbjct: 319 NEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLS 378

Query: 282 GYGMHG 287
           G  M G
Sbjct: 379 GSRMLG 384


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/541 (38%), Positives = 317/541 (58%), Gaps = 7/541 (1%)

Query: 45  KLLSLVCDAGFITYAQRIFFC----IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS 100
           KL++L      +  A+R+F      +  P+S ++  + I  S+  +  ++LL Y  M+  
Sbjct: 114 KLITLFSVCRRVDEARRVFEDGGEDVDLPES-VWVAMGIGYSRNGYPKEALLLYYEMVCQ 172

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
                N+ FS  +K+C+ L  L  GRAVH  V  +  D D  V  AL+  Y++    D A
Sbjct: 173 FGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEA 232

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
            +VFD MP ++VV+WNS+I+G  +     EAI  F +M+  G+     T   +L  CA++
Sbjct: 233 LRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARV 292

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             +  G+ +H  IV      +  +  SL++MYA+CG +   R +F+ M   ++ +W  +I
Sbjct: 293 TALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLI 352

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GY ++G  TEA+E F  M   G  P+ +TF+A+LS C+HAGL  +G R+F  M+ +YG+
Sbjct: 353 TGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGI 412

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
            P VEH+ C+VD+ GRAG + EA + VK+ +  KP  ++W ++L +C++H N  L   VA
Sbjct: 413 SPTVEHYACLVDVLGRAGRIKEALEIVKN-MPFKPTGSIWGSLLNSCRLHGNVPLAEAVA 471

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           + L  +EP N G+YVMLSNIYA AG  + V+VVR  M ++G+ K  G S +++  K + F
Sbjct: 472 KRLFELEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTF 531

Query: 461 -SMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALA 519
            + G     N+ E  +    LM    E GYVP++   +H++ EE R   +  HSE+LA  
Sbjct: 532 VAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLATM 591

Query: 520 FGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           F L+ T+ GM IRI KNLR+CVDCHS +K +S  T R I++RD  RFHHFK G CSC DY
Sbjct: 592 FALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGVCSCKDY 651

Query: 580 W 580
           W
Sbjct: 652 W 652



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 159/337 (47%), Gaps = 9/337 (2%)

Query: 10  AYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           A+   LKA   L  LQ    VHA ++ A     + +   LL L  + G    A R+F  +
Sbjct: 180 AFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGM 239

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P  +   +N+LI    K +   +++  +R M    +  S  T + ++  CA ++ L  G+
Sbjct: 240 PHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGK 299

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H  +  S    D  V  +LV+ YAK   +D  R+VF+ M  K + +WN++I+GY  NG
Sbjct: 300 EIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAING 359

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI-VGQGLDVNVVLA 245
              EA+  F  M   G +PD  T + +L+ C+  G  D G  + E + +  G+   V   
Sbjct: 360 RMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHY 419

Query: 246 TSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             L+++  R G + +A EI   M  +     W ++++   +HG    A  +  R+    +
Sbjct: 420 ACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRL--FEL 477

Query: 305 RPNNV-TFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
            PNN   +V + +  A+AG+  E  +V     ++ G+
Sbjct: 478 EPNNAGNYVMLSNIYANAGM-WESVKVVREFMEKRGM 513



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 147/334 (44%), Gaps = 42/334 (12%)

Query: 143 VQAALVNFYAKSNNVDVARKVFD---RMPDKSVVAWNSMISGYEQNGFAKEAIGL-FNLM 198
           ++  L+  ++    VD AR+VF+      D     W +M  GY +NG+ KEA+ L + ++
Sbjct: 111 LKGKLITLFSVCRRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLYYEMV 170

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
             FG   +    +  L AC+ LGD+  GR VH  ++    D + V+  +L+ +Y+  G  
Sbjct: 171 CQFGQLGNFAFSM-ALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCF 229

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
            +A  +FD M   NV++W ++I+G        EA+E F  M+  G+  + VT   +L  C
Sbjct: 230 DEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVC 289

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN----------------- 361
           A    +  G  + A + +     P       +VD++ + G ++                 
Sbjct: 290 ARVTALGSGKEIHAVIVKSTA-KPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSW 348

Query: 362 --------------EAYKFVKDVI--GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
                         EA +  +++I  G  P    + A+L  C      D G  + E +  
Sbjct: 349 NTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKM 408

Query: 406 VEPENPG--HYVMLSNIYALAGRM-DRVEVVRNI 436
               +P   HY  L ++   AGR+ + +E+V+N+
Sbjct: 409 DYGISPTVEHYACLVDVLGRAGRIKEALEIVKNM 442


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/575 (38%), Positives = 333/575 (57%), Gaps = 12/575 (2%)

Query: 12  EAILKAGPRLKPLQQVHAHLIVAGY-----GRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           ++I++    L  ++QV AHL+  G        SR+ L +  +L     ++ YA  I   I
Sbjct: 5   DSIIQKCTTLSHIKQVQAHLLTTGQFNLRISPSRTRLLEHCALSPSPAYLPYAAHIHRHI 64

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
           P P +  FN L+   ++    T +L F    + + + P   TFS  + + A    L+   
Sbjct: 65  PHPSTNDFNALLRGLARGPHPTHALTF----LSTILHPDALTFSFSLIASARALALSETS 120

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H H+   G  +D+ +   L++ YAK  ++D A++VFD +P + V AWN++I+G  Q  
Sbjct: 121 QIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGS 180

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
            + EA+ LFN MR  G   +  + +  LAAC+QLG +  G  VH  +    LD+NV +  
Sbjct: 181 KSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCN 240

Query: 247 SLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           ++I+MYA+CG   K   +F  M+   +V+ W  MI  + MHG G  A+ELF  M    V 
Sbjct: 241 AVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVE 300

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
            ++VT++AVL AC HAGLV+EG R+F  M    G+   V+H+  +VDL GRAG L EAY+
Sbjct: 301 MDSVTYLAVLCACNHAGLVEEGVRLFDEMVGR-GVNRNVKHYGSVVDLLGRAGRLGEAYR 359

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
            +   +   P   +W ++LGACK + N ++    +  L+ +   + G +V+LSN+YA   
Sbjct: 360 IINS-MPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMGSNSCGDFVLLSNVYAARE 418

Query: 426 RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
           R + V  VR  M  + ++K  G+S +EV+   + F  GD+SHP+  EIY  LDE+  R +
Sbjct: 419 RWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKLDEIRFRIK 478

Query: 486 EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
             GYV E+   +H++ EE++E +L +HSEKLA+AFGL+ TS G  IR+ KNLR+C DCH 
Sbjct: 479 AFGYVAETSLVLHDIGEEDKENALCHHSEKLAVAFGLISTSEGTPIRVNKNLRICGDCHV 538

Query: 546 AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            IK IS   ++EIIVRDR RFH FK GSCSC DYW
Sbjct: 539 VIKLISKIYDQEIIVRDRARFHRFKDGSCSCRDYW 573


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/553 (35%), Positives = 326/553 (58%), Gaps = 2/553 (0%)

Query: 27   VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
            VH + +  G     S+   LL +  +        +IF  +   +   +  +I    +A  
Sbjct: 540  VHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGL 599

Query: 87   STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
                    + M++  I P  +  ++ + + A    L  G++VH +   +G +  L V  A
Sbjct: 600  FDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANA 659

Query: 147  LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
            L+  Y K  NV+ AR +FDR+ +K V++WN++I GY +N F  E+  LF+ M      P+
Sbjct: 660  LMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDML-LQFRPN 718

Query: 207  STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
            + T  C+L A A +  ++ GR +H + + +G   +   + +L++MY +CG +  AR +FD
Sbjct: 719  AVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFD 778

Query: 267  MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
             +++ N+I+WT MI+GYGMHG+G  A+ LF +MR  G+ P+  +F A+L AC H+GL  E
Sbjct: 779  RLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAE 838

Query: 327  GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
            G R F +M++EY + P ++H+ C+VDL  R G L EA +F++ +  E P  ++W ++L  
Sbjct: 839  GRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIE-PDSSIWVSLLHG 897

Query: 387  CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
            C++HKN  L  +VA+ +  +EPEN G+YV+L+NIYA A R + V+ ++N +  +GL+++ 
Sbjct: 898  CRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENT 957

Query: 447  GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
            GYS +EV  K ++F   +++HP+ N I ++LD++  R R+ G+ P+ + A+   ++   +
Sbjct: 958  GYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRMRQEGHDPKKKYALMGADDAVHD 1017

Query: 507  YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
             +L  HS KLA+AFG++    G  IR+ KN ++C  CH A KFIS   NREII+RD  RF
Sbjct: 1018 EALCGHSSKLAVAFGVLNLPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRF 1077

Query: 567  HHFKRGSCSCLDY 579
            H F+ G CSC  Y
Sbjct: 1078 HRFEGGRCSCRGY 1090



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 146/288 (50%), Gaps = 1/288 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSF-LFNTLIIRNSKANFSTDSLLFYRRMIVSNI 102
           +KL+ +    G +  A+R+F  + S  +  ++N ++   +K     +SL  + +M    I
Sbjct: 354 SKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGI 413

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
           +P  +  S ++K    LS    G   H ++   G+ +   V  AL++FYAKSN +  A  
Sbjct: 414 APDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVL 473

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           VF+RMP +  ++WNS+ISG   NG   EAI LF  M   G   DS T + VL ACAQ   
Sbjct: 474 VFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRY 533

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
              GR VH + V  GL     LA +L++MY+ C +     +IF  M + NV++WTAMI+ 
Sbjct: 534 WFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITS 593

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
           Y   G   +   L   M   G+RP+     + L A A    +++G  V
Sbjct: 594 YMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSV 641



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 176/364 (48%), Gaps = 6/364 (1%)

Query: 28  HAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFS 87
           H +++  G+G   ++   L+S    +  I  A  +F  +P  D+  +N++I   S    +
Sbjct: 440 HGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLN 499

Query: 88  TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL 147
           ++++  + RM        + T  +V+ +CA       GR VH +   +G   +  +  AL
Sbjct: 500 SEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANAL 559

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
           ++ Y+  ++     ++F  M  K+VV+W +MI+ Y + G   +  GL   M   G+ PD 
Sbjct: 560 LDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDV 619

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
                 L A A    +  G+ VH + +  G++  + +A +L+ MY +C NV +AR IFD 
Sbjct: 620 FAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDR 679

Query: 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG 327
           ++  +VI+W  +I GY  + +  E+  LF  M     RPN VT   +L A A    ++ G
Sbjct: 680 VTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERG 738

Query: 328 HRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
             + A ++R+  G L        +VD++ + G L  A + + D + +K   + WT M+  
Sbjct: 739 REIHAYALRR--GFLEDSYASNALVDMYVKCGALLVA-RVLFDRLTKKNLIS-WTIMIAG 794

Query: 387 CKMH 390
             MH
Sbjct: 795 YGMH 798



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 161/338 (47%), Gaps = 22/338 (6%)

Query: 12  EAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLV-CDAGFITYAQRIFFCIP--S 68
           E  L+A  R   L +  +     G G   S+L K L L     G +  A+ +F  +P  +
Sbjct: 110 ERSLEAAKRAHALIRASSAAATGGKG---SVLGKRLVLAYLKCGDLGEARTVFDGMPPQA 166

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
            D  ++ +L+   +KA    +++  +R+M    +SP  +  S V+K  + L  L  G  +
Sbjct: 167 ADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVI 226

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H  +   G      V  AL+  Y++   ++ A +VFD M  +  ++WNSMI G   NG+ 
Sbjct: 227 HGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWH 286

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV-------- 240
             A+ LF+ M   G    S T + VL ACA LG   +G+ VH + V  GL          
Sbjct: 287 GTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSG 346

Query: 241 --NVVLATSLINMYARCGNVSKAREIFDMM-SELNVIAWTAMISGYGMHGYGTEAVELFH 297
             +  L + L+ MY +CG+++ AR +FD M S+ NV  W  ++ GY   G   E++ LF 
Sbjct: 347 IDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFV 406

Query: 298 RMRAHGVRPNNVTFVAVLS-----ACAHAGLVQEGHRV 330
           +M   G+ P+      +L      +CA  GLV  G+ V
Sbjct: 407 QMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIV 444



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 143/296 (48%), Gaps = 16/296 (5%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKS--VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           LV  Y K  ++  AR VFD MP ++  V  W S++S Y + G  +EA+ LF  M+  GV+
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS 201

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD+    CVL   + LG +  G  +H  +   GL     +A +LI +Y+RCG +  A  +
Sbjct: 202 PDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARV 261

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD M   + I+W +MI G   +G+   AV+LF +M + G   ++VT ++VL ACA  G  
Sbjct: 262 FDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYG 321

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVD----------LFGRAGLLNEAYKFVKDVIGEK 374
             G  V      + GLL G++     +D          ++ + G +  A + V D +  K
Sbjct: 322 LIGKAVHG-YSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARR-VFDAMSSK 379

Query: 375 PAPAVWTAMLGACKMHKNFD--LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
               VW  ++G       F+  L + V  H L + P+      +L  I  L+   D
Sbjct: 380 GNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARD 435



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 149/300 (49%), Gaps = 9/300 (3%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  + VH + I  G  +   +   L+ +      +  A+ IF  + + D   +NTLI  
Sbjct: 635 LKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGG 694

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            S+ NF  +S   +  M++    P+  T + ++ + A +S L  GR +H +    G+  D
Sbjct: 695 YSRNNFPNESFSLFSDMLL-QFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLED 753

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
            +   ALV+ Y K   + VAR +FDR+  K++++W  MI+GY  +GF K AI LF  MR 
Sbjct: 754 SYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRG 813

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVS 259
            G+ PD+ +   +L AC   G    GR   + +  +  ++  +   T ++++ +R G++ 
Sbjct: 814 SGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLK 873

Query: 260 KAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRM--RAHGVRPNNVTFVAVLS 316
           +A E  + M  E +   W +++ G  +H    + V+L  ++  +   + P N  +  +L+
Sbjct: 874 EALEFIESMPIEPDSSIWVSLLHGCRIH----KNVKLAEKVADKVFKLEPENTGYYVLLA 929



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/189 (19%), Positives = 78/189 (41%), Gaps = 19/189 (10%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P++     IL A   +  L+   ++HA+ +  G+         L+ +    G +  A+ 
Sbjct: 716 RPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARV 775

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   +   +  +I       F   ++  + +M  S I P   +FSA++ +C H  +
Sbjct: 776 LFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGL 835

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAAL------VNFYAKSNNVDVARKVFDRM---PDKSV 172
              GR      F      +  ++  L      V+  +++ ++  A +  + M   PD S+
Sbjct: 836 AAEGRR-----FFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSI 890

Query: 173 VAWNSMISG 181
             W S++ G
Sbjct: 891 --WVSLLHG 897


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/572 (36%), Positives = 340/572 (59%), Gaps = 6/572 (1%)

Query: 13  AILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           +I+ A  RL  L    ++HA++I  G+  +  +   L+ +        Y  R F  +   
Sbjct: 391 SIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDK 450

Query: 70  DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
           D   + T+I   ++ +   ++L  +R +    +        +++++ + L  + + + +H
Sbjct: 451 DLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIH 510

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
           CH+   G   D  +Q  LV+ Y K  N+  A +VF+ +  K VV+W SMIS    NG   
Sbjct: 511 CHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNES 569

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           EA+ LF  M + G++ DS   +C+L+A A L  ++ GR +H +++ +G  +   +A +++
Sbjct: 570 EAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVV 629

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           +MYA CG++  A+ +FD +    ++ +T+MI+ YGMHG G  AVELF +MR   V P+++
Sbjct: 630 DMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHI 689

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           +F+A+L AC+HAGL+ EG      M  EY L P  EH+VC+VD+ GRA  + EA++FVK 
Sbjct: 690 SFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVK- 748

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
           ++  +P   VW A+L AC+ H   ++G   A+ LL +EP+NPG+ V++SN++A  GR + 
Sbjct: 749 MMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWND 808

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRC-REAG 488
           VE VR  M   G++KH G S +E+D K + F+  DKSHP + EIY+ L E+  +  RE G
Sbjct: 809 VEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVG 868

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           YV +++  +H ++E E+   L  HSE++A+A+GL+RT     +RI KNLR+C DCH+  K
Sbjct: 869 YVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCK 928

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            +S    R+I++RD  RFHHF+ G CSC D W
Sbjct: 929 LVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 207/398 (52%), Gaps = 15/398 (3%)

Query: 10  AYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           ++ A+LKA  +L+ ++   ++H+ L+  GY  +  ++  L+S+      ++ A+R+F   
Sbjct: 184 SFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGF 243

Query: 67  PSP-DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
               D+ L+N+++   S +  S ++L  +R M ++  +P++YT  + + +C   S   LG
Sbjct: 244 QEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLG 303

Query: 126 RAVHCHVFVSG-YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           + +H  V  S  + S+L+V  AL+  Y +   +  A ++  +M +  VV WNS+I GY Q
Sbjct: 304 KEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQ 363

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           N   KEA+  F+ M   G   D  +   ++AA  +L ++  G  +H +++  G D N+ +
Sbjct: 364 NLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQV 423

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             +LI+MY++C         F  M + ++I+WT +I+GY  +    EA+ELF  +    +
Sbjct: 424 GNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRM 483

Query: 305 RPNNVTFVAVLSACA---HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             + +   ++L A +      +V+E H     +R+  GLL  V  +  +VD++G+   + 
Sbjct: 484 EIDEMILGSILRASSVLKSMLIVKEIH--CHILRK--GLLDTVIQNE-LVDVYGKCRNMG 538

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
            A +  + + G+      WT+M+ +  ++ N    VE+
Sbjct: 539 YATRVFESIKGKDVVS--WTSMISSSALNGNESEAVEL 574



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 175/372 (47%), Gaps = 28/372 (7%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           +PSP    F+ ++              F R  +  N SP    F+ V++ C     ++ G
Sbjct: 52  VPSPKLACFDGVLTEA-----------FQRLDVSENNSPVE-AFAYVLELCGKRRAVSQG 99

Query: 126 RAVHCHVFVSGYDSDLHVQAA-LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           R +H  +F +    +L   A  LV  Y K  ++D A KVFD MPD++  AWN+MI  Y  
Sbjct: 100 RQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVS 159

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           NG    A+ L+  MR  GV    ++   +L ACA+L DI  G  +H  +V  G      +
Sbjct: 160 NGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFI 219

Query: 245 ATSLINMYARCGNVSKAREIFDMMSEL-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
             +L++MYA+  ++S AR +FD   E  + + W +++S Y   G   E +ELF  M   G
Sbjct: 220 VNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTG 279

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLN 361
             PN+ T V+ L+AC      + G  + AS+ +        E +VC  ++ ++ R G + 
Sbjct: 280 PAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSS--THSSELYVCNALIAMYTRCGKMP 337

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY---VMLS 418
           +A + ++ +         W +++     +  +   +E    +++      GH    V ++
Sbjct: 338 QAERILRQM--NNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAA-----GHKSDEVSMT 390

Query: 419 NIYALAGRMDRV 430
           +I A +GR+  +
Sbjct: 391 SIIAASGRLSNL 402



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 156/317 (49%), Gaps = 3/317 (0%)

Query: 45  KLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP 104
           KL+ +    G +  A+++F  +P   +F +NT+I           +L  Y  M V  +  
Sbjct: 121 KLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPL 180

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
              +F A++K+CA L  +  G  +H  +   GY S   +  ALV+ YAK++++  AR++F
Sbjct: 181 GLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLF 240

Query: 165 DRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           D   +K   V WNS++S Y  +G + E + LF  M   G  P+S T V  L AC      
Sbjct: 241 DGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYA 300

Query: 224 DLGRWVHEFIVGQGL-DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
            LG+ +H  ++        + +  +LI MY RCG + +A  I   M+  +V+ W ++I G
Sbjct: 301 KLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKG 360

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
           Y  +    EA+E F  M A G + + V+  ++++A      +  G  + A + + +G   
Sbjct: 361 YVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIK-HGWDS 419

Query: 343 GVEHHVCMVDLFGRAGL 359
            ++    ++D++ +  L
Sbjct: 420 NLQVGNTLIDMYSKCNL 436


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/580 (37%), Positives = 339/580 (58%), Gaps = 7/580 (1%)

Query: 6   PHSPAYEAILKAGPRL---KPLQQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQR 61
           P +  + AI KA   +   +  Q+ H   +V G+  S   + T ++ +    G +  A+ 
Sbjct: 99  PDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARF 158

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +   D  LF  LI+  ++     ++L  +  M+ S I P+ YT ++V+ SC +L  
Sbjct: 159 VFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGD 218

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +H  V  SG +S +  Q +L+  Y+K N V+ + KVF+ +   S V W S I G
Sbjct: 219 LVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVG 278

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             QNG  + A+ +F  M    ++P+  T   +L AC+ L  ++ G  +H   V  G+D N
Sbjct: 279 LVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGN 338

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +  +LI++Y +CGNV KAR +F+ ++EL+V++   MI  Y  +G+G EA+ELF RM+ 
Sbjct: 339 KYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKK 398

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G +PN VTF+++L AC +AGLV+EG ++F+ +R  + +    +H+ CM+DL GRA    
Sbjct: 399 LGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFE 458

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA   +++  G+ P    W  +L ACK+H   ++  +  + +L   P + G +++L+NIY
Sbjct: 459 EAAMLIEE--GKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIY 516

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AG+ D V  +++      LKK    S V++D++ + F  GD SHP  +EI + L EL+
Sbjct: 517 ASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELI 576

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT-IRIVKNLRMC 540
            +    GY P+++  + +LEEE++  +L YHSEKLA+AF L +T    T IRI KNLR+C
Sbjct: 577 EKVITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVC 636

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCHS IKF+S+ T R+II RD  RFHHFK G CSC DYW
Sbjct: 637 GDCHSWIKFVSLLTGRDIIARDAKRFHHFKGGICSCKDYW 676



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 180/348 (51%), Gaps = 11/348 (3%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLT----KLLSLVCDAGFITYAQRIFFCIPSPDSFLFNT 76
           L  L+ +H H++ +G     S+ +    KL+        IT A+++F  +P+     +N+
Sbjct: 17  LTTLKSLHTHILKSG-----SLFSFFGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNS 71

Query: 77  LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
           +I  +     + +++  Y  M+   + P  YTFSA+ K+ + + +   G+  H    V G
Sbjct: 72  MISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLG 131

Query: 137 YD-SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           ++ SD  V   +V+ YAK   +  AR VFDR+ DK VV + ++I GY Q G   EA+ +F
Sbjct: 132 FEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVF 191

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             M    + P+  T   VL +C  LGD+  G+ +H  +V  GL+  V   TSL+ MY++C
Sbjct: 192 EDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKC 251

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
             V  + ++F+ ++  + + WT+ I G   +G    A+ +F  M    + PN+ TF ++L
Sbjct: 252 NMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSIL 311

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
            AC+   +++ G ++ A +  + G+         ++ L+G+ G + +A
Sbjct: 312 HACSSLAMLEAGEQIHA-VTVKLGVDGNKYVDAALIHLYGKCGNVEKA 358



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 171/352 (48%), Gaps = 15/352 (4%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           ++++I    +   L   +++H H+  SG          L++ Y K + +  ARK+FD MP
Sbjct: 4   YTSLIAQFTNKKSLTTLKSLHTHILKSGSLFSFFGHK-LIDGYIKCSVITEARKLFDEMP 62

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           ++ +V WNSMIS +   G  KEAI L++ M   GV PD+ T   +  A +++G    G+ 
Sbjct: 63  NRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQK 122

Query: 229 VHEFIVGQGLDV-NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            H   V  G +V +  +AT +++MYA+ G +  AR +FD + + +V+ +TA+I GY   G
Sbjct: 123 AHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRG 182

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
              EA+E+F  M    ++PN  T  +VL +C + G +  G ++   +  + GL   V   
Sbjct: 183 LDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNG-KLIHGLVVKSGLESVVASQ 241

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
             ++ ++ +  ++ ++ K    +     +   WT+ +     +   ++ + +   ++   
Sbjct: 242 TSLLTMYSKCNMVEDSIKVFNSL--AYASHVTWTSFIVGLVQNGREEIALSMFREMIRCS 299

Query: 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYL 459
             +P H+   S ++A +            M++ G + H     + VD   Y+
Sbjct: 300 I-SPNHFTFSSILHACSSLA---------MLEAGEQIHAVTVKLGVDGNKYV 341


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/579 (35%), Positives = 339/579 (58%), Gaps = 5/579 (0%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P   A+ + ++A   L  ++   Q+H   +  G G    + + L  +    G +  A ++
Sbjct: 104 PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKV 163

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P  D   +  +I   SK     ++LL +++MI   ++   +   + + +C  L   
Sbjct: 164 FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKAC 223

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-KSVVAWNSMISG 181
             GR+VH  V   G++SD+ V  AL + Y+K+ +++ A  VF    + ++VV++  +I G
Sbjct: 224 KFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDG 283

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y +    ++ + +F  +R  G+ P+  T   ++ ACA    ++ G  +H  ++    D +
Sbjct: 284 YVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDED 343

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +++ L++MY +CG + +A + FD + +   IAW +++S +G HG G +A+++F RM  
Sbjct: 344 PFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVD 403

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV+PN +TF+++L+ C+HAGLV+EG   F SM + YG++PG EH+ C++DL GRAG L 
Sbjct: 404 RGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLK 463

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA +F+  +  E P    W + LGAC++H + ++G   AE L+ +EP+N G  V+LSNIY
Sbjct: 464 EAKEFINRMPFE-PNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIY 522

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A   + + V  VR  M    +KK  GYS V+V  K ++F   D SHP  + IY+ LD L+
Sbjct: 523 ANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLL 582

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            + + AGYVP ++S   ++++  +E  L  HSE++A+AF L+    G  I + KNLR+CV
Sbjct: 583 DQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCV 642

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSAIKFIS  T R+IIVRD  RFHHF  GSCSC DYW
Sbjct: 643 DCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/510 (26%), Positives = 250/510 (49%), Gaps = 49/510 (9%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           RL+  +Q+HA LI AGY     +   L+++    G + +A ++F  +P  +   +  +I 
Sbjct: 20  RLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMIS 79

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             S+ +  ++++  +  M +    P+ + FS+ I++CA L  + +G+ +HC     G  S
Sbjct: 80  GLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGS 139

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           +L V + L + Y+K   +  A KVF+ MP K  V+W +MI GY + G  +EA+  F  M 
Sbjct: 140 ELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMI 199

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
           D  V  D       L AC  L     GR VH  +V  G + ++ +  +L +MY++ G++ 
Sbjct: 200 DEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDME 259

Query: 260 KAREIFDMMSEL-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
            A  +F + SE  NV+++T +I GY       + + +F  +R  G+ PN  TF +++ AC
Sbjct: 260 SASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKAC 319

Query: 319 AHAGLVQEGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           A+   +++G ++ A  M+  +   P V     +VD++G+ GLL +A +   D IG+ P  
Sbjct: 320 ANQAALEQGTQLHAQVMKINFDEDPFVSS--ILVDMYGKCGLLEQAIQAF-DEIGD-PTE 375

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
             W +++     H      +++ E ++   V+P N   ++ L    + AG          
Sbjct: 376 IAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP-NAITFISLLTGCSHAG---------- 424

Query: 436 IMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSH---PNTNEIYQYLDELMGRCREAGYVPE 492
            ++++GL              +Y +SM DK++   P   E Y  + +L+GR   AG + E
Sbjct: 425 -LVEEGL--------------DYFYSM-DKTYGVVPG-EEHYSCVIDLLGR---AGRLKE 464

Query: 493 SESAMHELEEEEREY-------SLRYHSEK 515
           ++  ++ +  E   +       + R H +K
Sbjct: 465 AKEFINRMPFEPNAFGWCSFLGACRIHGDK 494



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 127/252 (50%), Gaps = 1/252 (0%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           VI++ A    L  G+ +H  +  +GY     +   LVN Y+K   +D A K+FD MP ++
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRN 70

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           +V+W +MISG  QN    EAI  F  MR  G  P        + ACA LG I++G+ +H 
Sbjct: 71  LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC 130

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
             +  G+   + + ++L +MY++CG +  A ++F+ M   + ++WTAMI GY   G   E
Sbjct: 131 LALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEE 190

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           A+  F +M    V  +     + L AC      + G  V +S+ +  G    +     + 
Sbjct: 191 ALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK-LGFESDIFVGNALT 249

Query: 352 DLFGRAGLLNEA 363
           D++ +AG +  A
Sbjct: 250 DMYSKAGDMESA 261



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 7/181 (3%)

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           D+     V+   A+   +  G+ +H  ++  G      L   L+NMY++CG +  A ++F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D M + N+++WTAMISG   +   +EA+  F  MR  G  P    F + + ACA  G ++
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP--AVWTAM 383
            G ++   +  ++G+   +     + D++ + G + +A K    V  E P      WTAM
Sbjct: 124 MGKQMHC-LALKFGIGSELFVGSNLEDMYSKCGAMFDACK----VFEEMPCKDEVSWTAM 178

Query: 384 L 384
           +
Sbjct: 179 I 179


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/561 (36%), Positives = 317/561 (56%), Gaps = 1/561 (0%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           R++  +Q H  L+  G+     +   L+S+      +  A  ++  +P  D   +N+++ 
Sbjct: 148 RVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILS 207

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
              +  +  + L   R M+  ++     TF      CA L  L LG  VH  +  S  + 
Sbjct: 208 SLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVEC 267

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           D +V +A++N Y K     +AR VFD +  ++VV W ++++   QNG  +EA+ LF+ M 
Sbjct: 268 DAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKME 327

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
              V  +  T   +L ACA L     G  +H      G   +V++  +LINMYA+ G++ 
Sbjct: 328 QENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIE 387

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            A+++F  M   ++I W AMI G+  HG G +A+ +F  M A    PN VTF  VLSAC 
Sbjct: 388 AAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACG 447

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H GLVQEG      + +++G+ PG+EH+ C+V L  + G LNEA  F++    +    A 
Sbjct: 448 HLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVA- 506

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W  +L AC +H+N+ LG  VAE +L ++P + G Y +LSNIYA   R D V  VR +M  
Sbjct: 507 WRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRD 566

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           K +KK  G S +E+    ++F+  D  HP+  + YQ + EL+   +  GY P+  + +H+
Sbjct: 567 KKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGYTPDIGAVLHD 626

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           +E+E++EY L YHSEKLA+A+GL++     +I ++KNLR+C DCHSA++ IS  TNR I+
Sbjct: 627 VEDEQKEYYLSYHSEKLAIAYGLLKLPSEASILVIKNLRICDDCHSAVRLISKVTNRVIV 686

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           VRD  RFHHF+ G CSCLDYW
Sbjct: 687 VRDANRFHHFRDGRCSCLDYW 707



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 212/441 (48%), Gaps = 24/441 (5%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSML--TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           LK  + +H+HLIV       S++    L++       ++ A  +F  +P  +   ++ L+
Sbjct: 45  LKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALM 104

Query: 79  IRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
                  FS   +   + MI   N+SP+ Y  +  I SC     +  GR  H  +  +G+
Sbjct: 105 TGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGF 164

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
               +V+ ALV+ Y+K + V  A  V++ +P   +VA+NS++S   +NG+ +E + +   
Sbjct: 165 SFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRS 224

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M    V  D  T V   + CA L D+ LG  VH  ++   ++ +  +++++INMY +CG 
Sbjct: 225 MVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGK 284

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
              AR +FD +   NV+ WTA+++    +G   EA+ LF +M    V+ N  T+  +L+A
Sbjct: 285 SLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNA 344

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGE 373
           CA     + G     S+   +    G +HHV     +++++ ++G +  A K   D++  
Sbjct: 345 CAGLSARRNG-----SLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHR 399

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE-- 431
                 W AM+     H      + V + +L+ E E+P +YV  + + +  G +  V+  
Sbjct: 400 D--IITWNAMICGFSHHGLGKKALLVFQDMLAAE-EHP-NYVTFTGVLSACGHLGLVQEG 455

Query: 432 ------VVRNIMIQKGLKKHV 446
                 +++   +Q GL+ + 
Sbjct: 456 FYYLHHLMKQFGVQPGLEHYT 476


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/569 (38%), Positives = 336/569 (59%), Gaps = 43/569 (7%)

Query: 54  GFITYAQRIFFCIP-SPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTF 109
             I+YA  IF       +SF++N +I   + N         +  Y RM    +SP  +TF
Sbjct: 5   AIISYANPIFHIRHLKLESFVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTF 64

Query: 110 SAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL---------------------- 147
             ++ S  +   L LG+  H  + + G D D  V+ +L                      
Sbjct: 65  PFLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVS 124

Query: 148 ---------VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
                    VN YAK+  ++ ARK+FD MP+++V++W+ +I+GY   G  KEA+ LF  M
Sbjct: 125 KDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREM 184

Query: 199 R-----DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           +     +  V+P+  T   VL+AC +LG ++ G+WVH +I   G+++++VL T+LI+MYA
Sbjct: 185 QLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYA 244

Query: 254 RCGNVSKAREIFDMM-SELNVIAWTAMISGYGMHGYGTEAVELFHRMR-AHGVRPNNVTF 311
           +CG++ +A+ +FD + S+ +V A++AMI    M+G   E  ++F  M  ++ + PN+VTF
Sbjct: 245 KCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTF 304

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           V +L AC H GL+ +G   F  M +E+G+ P ++H+ CMVDL+GR+GL+ EA  F+  + 
Sbjct: 305 VGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMP 364

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
            E P   +W ++L   +M  +        + L+ ++P N G YV+LSN+YA  GR   V+
Sbjct: 365 ME-PDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVK 423

Query: 432 VVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVP 491
            +R+ M  KG+KK  G S VEV+   + F +GD+S   +  IY  L+E+M R REAGYV 
Sbjct: 424 RIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEEIMQRLREAGYVS 483

Query: 492 ESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFIS 551
           +++  + +LEE+++E +L YHSEKLA+AF LM+T PG  +RI+KNLR+C DCH  +K IS
Sbjct: 484 DTKEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMIS 543

Query: 552 VATNREIIVRDRLRFHHFKRGSCSCLDYW 580
              +REI+VRD  RFHHF  GSCSC D+W
Sbjct: 544 KLFSREIVVRDCNRFHHFSDGSCSCRDFW 572


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/597 (36%), Positives = 339/597 (56%), Gaps = 38/597 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAG--FITYAQRIFFCIPSPDSFLFNTLI 78
           L  ++Q+H H++  G  +S  +LTKL+  +   G     Y +R+   +   + FL+  +I
Sbjct: 63  LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVI 122

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH--------- 129
              +      +++  Y  M    I+P ++TFSA++K+C  +  LNLGR  H         
Sbjct: 123 RGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGF 182

Query: 130 CHVFVSGYDSDLHVQAA----------------------LVNFYAKSNNVDVARKVFDRM 167
           C V+V     D++V+                        L+  YA+  N++ A  +F+ +
Sbjct: 183 CFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESL 242

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
           P K +VAW +M++G+ QN   +EA+  F+ M   G+  D  T    ++ACAQLG      
Sbjct: 243 PTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYAD 302

Query: 228 WVHEFIVGQGLDVN--VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
              +     G   +  VV+ ++LI+MY++CGNV +A  +F  M+  NV ++++MI G   
Sbjct: 303 RAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLAT 362

Query: 286 HGYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
           HG   EA++LFH M     ++PN VTFV  L+AC+H+GLV +G +VFASM Q +G+ P  
Sbjct: 363 HGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTR 422

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           +H+ CMVDL GRAG L EA + +K  +  +P   VW A+LGAC++H N D+    AEHL 
Sbjct: 423 DHYTCMVDLLGRAGRLQEALELIK-TMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLF 481

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS-TVEVDQKNYLFSMG 463
            +EP+  G+Y++LSN+Y+ AG    V  VR ++ +KGLKK    S  V+ + + + F  G
Sbjct: 482 ELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPG 541

Query: 464 DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLM 523
           + +HP + +I   L+EL+ R    GY P+  S  +++ +  +   L  H+EKLALAF L+
Sbjct: 542 NLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLL 601

Query: 524 RTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            T+   TI+I+KNLRMC DCH  ++  S  T R II+RD +RFHHF+ G+CSC D+W
Sbjct: 602 TTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/522 (40%), Positives = 308/522 (59%), Gaps = 15/522 (2%)

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS-PSNYTFSAVIKSCAHLSILN---- 123
           P +F +NT I   +       ++  YR M+++ +S P+NYT+  ++ +CA L   +    
Sbjct: 55  PTTFSYNTTIRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPRE 114

Query: 124 --LGRAVHCHVFVSGYDS-DLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNSM 178
              G AVH  +F  G +S D  + A++++FYA + ++  AR+VFDR P   + +  WNS+
Sbjct: 115 AAAGTAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSL 174

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           +  Y   G     + LF  M    V  D  T + V++AC+ LG +D GRW H +      
Sbjct: 175 LHAYLSQGLYTHVLRLFRQM----VATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCR 230

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           +    L T+L+NMY RCG+V  A  +F  M + +V  W+ MI+G  ++G   +A++LF  
Sbjct: 231 NTTRNLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAE 290

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M+  GV P+++T  AVLSAC+HAG+V EG      M  EY L P +EH+ C+VDL GRAG
Sbjct: 291 MKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAG 350

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
            L EA   + + +  K   A+W A+L AC+ HKN D+G   A  +L ++P + G  V LS
Sbjct: 351 QLEEALALI-ETVPFKADVALWGALLVACRAHKNVDMGQMAAMEILKLDPHHAGACVFLS 409

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           N YA AG+ D V+ VR+ M +  + K  G S VE+D   Y F  GD SHP ++ IY  LD
Sbjct: 410 NAYAAAGKWDLVQEVRSSMKEHRIYKPPGSSIVELDGVVYEFLSGDHSHPQSDRIYAMLD 469

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           E+       G+ P ++    +++EE++E  +  HSEKLALA GL+ T  G  IRIVKNLR
Sbjct: 470 EVCKTLSLKGHRPSTKEVAFDIDEEDKEVCISQHSEKLALALGLISTRRGAVIRIVKNLR 529

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCHS +K +S   +R I+VRDR RFHHFK GSCSCLDYW
Sbjct: 530 ICEDCHSVMKIVSEVYDRVIVVRDRNRFHHFKNGSCSCLDYW 571



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 83/190 (43%), Gaps = 5/190 (2%)

Query: 39  SRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI 98
           +R++ T LL++    G +  A  +F  +   D   ++ +I   +      D+L  +  M 
Sbjct: 233 TRNLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMK 292

Query: 99  VSNISPSNYTFSAVIKSCAHLSILNLGRA-VHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
              + P + T +AV+ +C+H  +++ G+  +HC          +     +V+   ++  +
Sbjct: 293 NIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQL 352

Query: 158 DVARKVFDRMPDKSVVA-WNSMISGYEQNGFAKEAIGLFNLMRDFGVNP-DSTTCVCVLA 215
           + A  + + +P K+ VA W +++     +      +G    M    ++P  +  CV +  
Sbjct: 353 EEALALIETVPFKADVALWGALLVACRAHKNVD--MGQMAAMEILKLDPHHAGACVFLSN 410

Query: 216 ACAQLGDIDL 225
           A A  G  DL
Sbjct: 411 AYAAAGKWDL 420


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/530 (40%), Positives = 303/530 (57%), Gaps = 5/530 (0%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           I  A+R F   P  D   +  +I   +    ++ +L   RRM +  I     T+ +++ +
Sbjct: 184 IEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLDA 243

Query: 116 CAHLSILNLGRAVHCHVFVSGYD-SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           CA    L  G A H      G D S   V   LVN Y K   VD AR+V D MP ++ V+
Sbjct: 244 CASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVS 303

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           W +MI+ Y QNG A EAI LF  M   G  P   T + V+ +CA LG + LG+ +H  I 
Sbjct: 304 WTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIR 363

Query: 235 GQ-GLDVNVVLATSLINMYARCGNVSKAREIFDM--MSELNVIAWTAMISGYGMHGYGTE 291
                  +++L  ++I MY +CGN+  ARE+F+   +   +V+ WTAMI  Y  +G G E
Sbjct: 364 SSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGEE 423

Query: 292 AVELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350
           A+ELF  M   G   PN VTF++VL AC+H G +++    F SM  ++G+ P  +H+ C+
Sbjct: 424 AIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCL 483

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410
           VDL GRAG L EA K +      +     W A L AC+M+ + +     A+ +  +EPEN
Sbjct: 484 VDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPEN 543

Query: 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNT 470
               V+LSN+YA  GR   V  +RN M   G+KK  G S +E++ + + F + D SHP  
Sbjct: 544 VAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRK 603

Query: 471 NEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT 530
            EIY  L+ L    +EAGYVP+++  + +++EE++   L YHSE+LA+A G++ T PG T
Sbjct: 604 LEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKVQLLGYHSERLAMALGIISTPPGTT 663

Query: 531 IRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +R+VKNLR+C DCH+A KFIS    R+IIVRD  RFHHFK G CSC DYW
Sbjct: 664 LRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 713



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 219/490 (44%), Gaps = 30/490 (6%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           Y ++L     L  ++++HA +      R+  +   L+      G +  AQ  F  I   +
Sbjct: 38  YASLLWQCRGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHN 97

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
           +  +N L+   ++      +   +  M    + P+  T S  + +C     L LGR ++ 
Sbjct: 98  AHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNE 157

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
            +     + D HV+++L+  Y +   ++ A + FDR P+K VV W +MIS Y  N     
Sbjct: 158 LIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSR 217

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD-VNVVLATSLI 249
           A+ L   M   G+     T V +L ACA   D+  G   H+     GLD  + V+A +L+
Sbjct: 218 ALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLV 277

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           N+Y +CG V  AR + D M     ++WTAMI+ Y  +G   EA+ LF  M   G  P+++
Sbjct: 278 NLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDI 337

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           T ++V+ +CA  G +  G R+ A +R        +     ++ ++G+ G L  A +  + 
Sbjct: 338 TLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFEC 397

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
           V     +   WTAM+ A   +   +  +E+ + +L      P     LS + A +     
Sbjct: 398 VPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACS----- 452

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQK-NYLFSMG-DKSHPNTNEIYQYLDELMGRCREA 487
                          H+G    +++Q   +  SMG D   P   + Y  L +L+GR   A
Sbjct: 453 ---------------HLG----QLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGR---A 490

Query: 488 GYVPESESAM 497
           G + E+E  +
Sbjct: 491 GRLGEAEKLL 500


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/561 (39%), Positives = 333/561 (59%), Gaps = 8/561 (1%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI--IRNS 82
            QQ+H   I  G     S+   LL+L  +   +   Q++FF +P  D   +N+ I  +  S
Sbjct: 476  QQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATS 535

Query: 83   KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
            +A+    ++ ++  M+ +   P+  TF  ++ + + LS+L LGR +H  +       D  
Sbjct: 536  EASV-LQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNA 594

Query: 143  VQAALVNFYAKSNNVDVARKVFDRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            ++  L+ FY K   ++    +F RM ++   V+WN+MISGY  NG   +A+GL  LM   
Sbjct: 595  IENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQK 654

Query: 202  GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
            G   D  T   VL+ACA +  ++ G  VH   +   L+  VV+ ++L++MYA+CG +  A
Sbjct: 655  GQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYA 714

Query: 262  REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
               F++M   N+ +W +MISGY  HG+G +A++LF +M+ HG  P++VTFV VLSAC+H 
Sbjct: 715  SRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHV 774

Query: 322  GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
            GLV EG   F SM + Y L P +EH  CMVDL GRAG + +  +F+K  +   P   +W 
Sbjct: 775  GLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIK-TMPMNPNALIWR 833

Query: 382  AMLGAC--KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
             +LGAC     +N +LG   A+ L+ +EP N  +YV+LSN++A  G+ + VE  R  M  
Sbjct: 834  TILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRN 893

Query: 440  KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
              +KK  G S V +    ++F  GD++HP   +IY  L E+M + R+ GYVPE++ A+++
Sbjct: 894  AEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALYD 953

Query: 500  LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
            LE E +E  L YHSEKLA+AF L R S  + IRI+KNLR+C DCH+A K+IS   NR+II
Sbjct: 954  LELENKEELLSYHSEKLAIAFVLTRQSE-LPIRIIKNLRVCGDCHTAFKYISNIVNRQII 1012

Query: 560  VRDRLRFHHFKRGSCSCLDYW 580
            +RD  RFHHF  G CSC DYW
Sbjct: 1013 LRDSNRFHHFDGGICSCQDYW 1033



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 167/320 (52%), Gaps = 11/320 (3%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L  L+Q+ A +  + + +   + + L+S     G I  A+ IF  +   ++   N L++ 
Sbjct: 266 LTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVG 325

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL------GRAVHCHVFV 134
            ++ +   ++   ++ M   ++   N +  AV+ S A     NL      G+ VH ++  
Sbjct: 326 LARQHQGEEAAKIFKEM--KDLVEINASSYAVLLS-AFTEFSNLKEGKRKGQEVHAYLIR 382

Query: 135 SGY-DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
           +   D  + +  ALVN YAK N +D AR +F  MP K  V+WNS+ISG + N   +EA+ 
Sbjct: 383 NALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVA 442

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
            F+ MR  G+ P   + +  L++CA LG I LG+ +H   +  GLD++V ++ +L+ +YA
Sbjct: 443 CFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYA 502

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT-EAVELFHRMRAHGVRPNNVTFV 312
               + + +++F +M E + ++W + I           +A++ F  M   G +PN VTF+
Sbjct: 503 ETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFI 562

Query: 313 AVLSACAHAGLVQEGHRVFA 332
            +LSA +   L++ G ++ A
Sbjct: 563 NILSAVSSLSLLELGRQIHA 582



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 155/326 (47%), Gaps = 19/326 (5%)

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P N  ++    SC     +     +H  ++ +G  SD+     LVN + ++ N+  A+K+
Sbjct: 41  PLNLDYNRYRDSCT----VEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKL 96

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD- 222
           FD MP K++V+W+ ++SGY QNG   EA  LF  +   G+ P+       L AC +LG  
Sbjct: 97  FDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPN 156

Query: 223 -IDLGRWVHEFIVGQGLDVNVVLATSLINMYARC-GNVSKAREIFDMMSELNVIAWTAMI 280
            + LG  +H  I       ++VL+  L++MY+ C  ++  AR +F+ +      +W ++I
Sbjct: 157 MLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSII 216

Query: 281 SGYGMHGYGTEAVELFHRMRAHGV----RPNNVTFVAVLS-ACAHAGLVQEGHRVFASMR 335
           S Y   G    A +LF  M+        RPN  TF ++++ AC+   LV  G  +   M 
Sbjct: 217 SVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACS---LVDCGLTLLEQML 273

Query: 336 ---QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKN 392
              ++   +  +     +V  F R GL++ A K + + + ++ A  +   M+G  + H+ 
Sbjct: 274 ARIEKSSFVKDLYVGSALVSGFARYGLIDSA-KMIFEQMDDRNAVTMNGLMVGLARQHQG 332

Query: 393 FDLGVEVAEHLLSVEPENPGHYVMLS 418
            +      E    VE     + V+LS
Sbjct: 333 EEAAKIFKEMKDLVEINASSYAVLLS 358



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 157/316 (49%), Gaps = 16/316 (5%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           Q+H  +   G          L+++   AG +  AQ++F  +P  +   ++ L+   ++  
Sbjct: 60  QLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNG 119

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL--SILNLGRAVHCHVFVSGYDSDLHV 143
              ++ + +R +I + + P++Y   + +++C  L  ++L LG  +H  +  S Y SD+ +
Sbjct: 120 MPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVL 179

Query: 144 QAALVNFYAK-SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR--- 199
              L++ Y+  S ++D AR+VF+ +  K+  +WNS+IS Y + G A  A  LF+ M+   
Sbjct: 180 SNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREA 239

Query: 200 -DFGVNPDSTT-CVCVLAACAQLGDIDLGRWVHEFIVGQ----GLDVNVVLATSLINMYA 253
            +    P+  T C  V  AC+    +D G  + E ++ +        ++ + ++L++ +A
Sbjct: 240 TELNCRPNEYTFCSLVTVACSL---VDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFA 296

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           R G +  A+ IF+ M + N +    ++ G      G EA ++F  M+   V  N  ++  
Sbjct: 297 RYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMK-DLVEINASSYAV 355

Query: 314 VLSACAHAGLVQEGHR 329
           +LSA      ++EG R
Sbjct: 356 LLSAFTEFSNLKEGKR 371


>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/549 (37%), Positives = 324/549 (59%), Gaps = 36/549 (6%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNL 124
           +P  D   + +++   ++AN S  +L  +  +  S+ + P ++ FSA++K+CA+L  + L
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD------------------- 165
           G+ VHCH  VS Y +D  V+++LV+ YAK   +D A+ VFD                   
Sbjct: 61  GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAK 120

Query: 166 ------------RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP-DSTTCVC 212
                       R+P K++ +W ++ISG+ Q+G   EA  +F  MR   V+  D      
Sbjct: 121 SGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSS 180

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
           ++ ACA L     GR VH  ++  G D  V ++ +LI+MYA+C +V  A++IF  M   +
Sbjct: 181 IVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRD 240

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           V++WT++I G   HG   +A+ L+  M +HGV+PN VTFV ++ AC+H G V +G  +F 
Sbjct: 241 VVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVGFVAKGRELFQ 300

Query: 333 SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKN 392
           SM ++YG+ P ++H+ C++DL GR+GLL+EA   +   +   P    W A+L ACK    
Sbjct: 301 SMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIH-TMPFPPDEPTWAALLSACKRQGQ 359

Query: 393 FDLGVEVAEHLL-SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTV 451
             +GV +A+HL+ S +P++P  Y++LSNIYA A    +V   R  +    ++K  GYS+V
Sbjct: 360 GQMGVRIADHLVSSFKPKDPSTYILLSNIYASASLWGKVSEARRKLGDMEVRKDPGYSSV 419

Query: 452 EVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR-EAGYVPESESAMHELEEEEREYSLR 510
           EV ++  +F  G+ SH    +I++ L +L    R   GYVP++   +H+++E+E+E  L 
Sbjct: 420 EVRKETEVFYAGETSHALKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLF 479

Query: 511 YHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
           +HSE+ A+A+GL++  PG  IRIVKNLR+C DCH  +K IS  T REIIVRD  R+HHFK
Sbjct: 480 WHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFK 539

Query: 571 RGSCSCLDY 579
            G CSC D+
Sbjct: 540 GGKCSCNDF 548



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 170/371 (45%), Gaps = 40/371 (10%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + A++KA   L  ++   QVH H IV+ Y     + + L+ +      +  A+ 
Sbjct: 39  RPDDFVFSALVKACANLGSIKLGKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKA 98

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI------------------S 103
           +F  I   ++  +  ++   +K+    ++L  +RR+ V N+                  +
Sbjct: 99  VFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEA 158

Query: 104 PSNYT--------------FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
            S +T               S+++ +CA+L+    GR VH  V   G+DS + +  AL++
Sbjct: 159 FSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALID 218

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            YAK ++V  A+ +F RM  + VV+W S+I G  Q+G A++A+ L++ M   GV P+  T
Sbjct: 219 MYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVT 278

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
            V ++ AC+ +G +  GR + + +    G+  ++   T L+++  R G + +A  +   M
Sbjct: 279 FVGLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM 338

Query: 269 S-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA---GLV 324
               +   W A++S     G G   V +   + +     +  T++ + +  A A   G V
Sbjct: 339 PFPPDEPTWAALLSACKRQGQGQMGVRIADHLVSSFKPKDPSTYILLSNIYASASLWGKV 398

Query: 325 QEGHRVFASMR 335
            E  R    M 
Sbjct: 399 SEARRKLGDME 409


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/532 (39%), Positives = 321/532 (60%), Gaps = 46/532 (8%)

Query: 51  CDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFS 110
           C AG +T A+R+F  +P  D+  FN++I   + +     +   + R++    +P+  T++
Sbjct: 57  CSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERVL----APTPVTWT 112

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
           +++                                     + ++ +V+ AR+VF+ MP++
Sbjct: 113 SMVAG-----------------------------------FCRAGDVESARRVFEEMPER 137

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH 230
            +V+WN+MISG   N    EA+ LF  M + G  P+  T V VL+AC   G ++ G+WVH
Sbjct: 138 DLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVH 197

Query: 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
            F+  + L  +  L T+L++MYA+CG V  A E+F  +   N   W AMI+G  M+GY  
Sbjct: 198 VFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSA 257

Query: 291 EAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
           +A+++F +M  +G V P+ VTFV VL AC+HAG V  G   F ++ Q+YG+   +EH+ C
Sbjct: 258 KALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYAC 317

Query: 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS-VEP 408
           MVDL  R+G L EA+K + + +  KP   VW A+LG C++HKN    V++AE+++S +E 
Sbjct: 318 MVDLLARSGHLQEAHKLITE-MPMKPDVVVWRALLGGCRLHKN----VKMAENVISEMEA 372

Query: 409 ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHP 468
              G +V+LSN+YA  GR + VE VR  M  KG++K  G S+VE+D   + F  GDKSHP
Sbjct: 373 TCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDKSHP 432

Query: 469 NTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPG 528
           + ++I+  L E+ GR ++ GYV E+    +++E+EE+E +L YHSEKLA+AFGL+   P 
Sbjct: 433 SYDDIHAKLIEIGGRMQQHGYVTETAEVFYDIEDEEKEQALGYHSEKLAIAFGLIGGPPE 492

Query: 529 MTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            TIRIVKNLR C DCHS  K +S   +REI+VRDR RFHHF+ G+CSC D+W
Sbjct: 493 ATIRIVKNLRFCTDCHSFAKLVSKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 127/247 (51%), Gaps = 5/247 (2%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T +++  C AG +  A+R+F  +P  D   +N +I          ++L  +R M+     
Sbjct: 112 TSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFV 171

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P+  T  +V+ +C     L  G+ VH  V       D  +  ALV+ YAK   V++A +V
Sbjct: 172 PNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEV 231

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-VNPDSTTCVCVLAACAQLGD 222
           F  +  ++   WN+MI+G   NG++ +A+ +F  M   G V PD  T V VL AC+  G 
Sbjct: 232 FTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGF 291

Query: 223 IDLGRWVHEFIVGQGLDVNVVLA--TSLINMYARCGNVSKARE-IFDMMSELNVIAWTAM 279
           +D G+  H + + Q   V ++L     ++++ AR G++ +A + I +M  + +V+ W A+
Sbjct: 292 VDAGK-EHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRAL 350

Query: 280 ISGYGMH 286
           + G  +H
Sbjct: 351 LGGCRLH 357



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 101/248 (40%), Gaps = 48/248 (19%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           A +  Y  +  V  AR+VFD MP +  V++NSMI GY  +G    A  LF   R     P
Sbjct: 51  AFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFE--RVLAPTP 108

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
                                                V  TS++  + R G+V  AR +F
Sbjct: 109 -------------------------------------VTWTSMVAGFCRAGDVESARRVF 131

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           + M E ++++W AMISG   +    EA+ LF  M   G  PN  T V+VLSAC  AG ++
Sbjct: 132 EEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALE 191

Query: 326 EG---HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
            G   H      R  +    G      +VD++ + G +  A +    +         W A
Sbjct: 192 TGKWVHVFVEKKRLRWDEFLG----TALVDMYAKCGAVELALEVFTGLRARN--TCTWNA 245

Query: 383 MLGACKMH 390
           M+    M+
Sbjct: 246 MINGLAMN 253


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/616 (33%), Positives = 345/616 (56%), Gaps = 41/616 (6%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP +  + +++ A   L   +    +H  ++  G+G    +   L+ + C    +  A++
Sbjct: 112 QPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARK 171

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI------VSNISPSNYTFSAVIKS 115
           +F  +P  D   +N+LI   +   +  ++L  Y + I      V+   P   T ++++++
Sbjct: 172 VFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQA 231

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           C HL  L  G+ VH ++  SGY+ D      L+N YAK  N+  +++VF  M  K  V+W
Sbjct: 232 CGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSW 291

Query: 176 NSMISGYEQNGFAKEAIGLF------------------------NL-------MRDFGVN 204
           NSMI+ Y QNG   +++ +F                        NL       MR  GV 
Sbjct: 292 NSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT 351

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD  T + +L  C+ L     G+ +H  I   GL+ +V +   LI MY++CG++  + ++
Sbjct: 352 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQV 411

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F +M   +V+ WTA+IS  GM+G G +AV  F  M A G+ P++V FVA++ AC+H+GLV
Sbjct: 412 FKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLV 471

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           +EG   F  M+++Y + P +EH+ C+VDL  R+ LL++A  F+   +  KP  ++W A+L
Sbjct: 472 EEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILS-MPLKPDSSIWGALL 530

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            AC+M  + ++   V+E ++ + P++ G+YV++SNIYA  G+ D+V  +R  +  +GLKK
Sbjct: 531 SACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKK 590

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S +E+  K Y+F  G K      E+ + L  L G   + GY+   +  +H+++E+E
Sbjct: 591 DPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDE 650

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +   L  HSE+LA+AFGL+ T PG  ++++KNLR+C DCH+  K+IS    RE++VRD  
Sbjct: 651 KRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDAN 710

Query: 565 RFHHFKRGSCSCLDYW 580
           RFH FK G+CSC DYW
Sbjct: 711 RFHVFKDGACSCGDYW 726



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 211/419 (50%), Gaps = 51/419 (12%)

Query: 15  LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF-FCIPSPDSFL 73
           L +      L ++H+ +I  G   S     KL++        T +  +F    PS + +L
Sbjct: 23  LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYL 82

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N++I   +     +++L  Y       + P  YTF +VI +CA L    + +++H  V 
Sbjct: 83  WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 142

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
             G+ SDL++  AL++ Y + N++D ARKVF+ MP + VV+WNS+ISGY  NG+  EA+ 
Sbjct: 143 DMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALE 202

Query: 194 LF--------NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           ++         ++  F   PD  T   +L AC  LGD++ G++VH++++  G + +   +
Sbjct: 203 IYYQSIKLFMEMVNQF--KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTAS 260

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
             LINMYA+CGN+  ++E+F  M   + ++W +MI+ Y  +G   +++++F  M+A  + 
Sbjct: 261 NILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDI- 319

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQE---------YGLLP----------GVEH 346
              +T+  ++++C H+     G R+ + MR E           +LP          G E 
Sbjct: 320 ---ITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEI 376

Query: 347 HVC---------------MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           H C               +++++ + G L  +++  K  + +      WTA++ AC M+
Sbjct: 377 HGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFK--LMKTKDVVTWTALISACGMY 433


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/581 (35%), Positives = 338/581 (58%), Gaps = 10/581 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQV---HAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + +++K+   LK L  V   H   + +G   ++++LT L+  +     I  A  
Sbjct: 301 KPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFS 360

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLL-FYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           +F  +    S +  T +I     N  TD  +  +  M    + P+++T+S ++ +  H  
Sbjct: 361 LFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL-TVQHAV 419

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            ++    +H  V  + Y+    V  AL++ + K  N+  A KVF+ +  K V+AW++M++
Sbjct: 420 FIS---EIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLA 476

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC-AQLGDIDLGRWVHEFIVGQGLD 239
           GY Q G  +EA  +F+ +   G+ P+  T   ++ AC A    ++ G+  H + +   L+
Sbjct: 477 GYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLN 536

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
             + +++SL+ +YA+ GN+  A EIF    E ++++W +MISGY  HG   +A+E+F  M
Sbjct: 537 NALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEM 596

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
           +   +  + +TF+ V+SACAHAGLV +G   F  M  ++ + P +EH+ CM+DL+ RAG+
Sbjct: 597 QKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGM 656

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           L +A   +   +   PA  VW  +L A ++H+N +LG   AE ++S+EP++   YV+LSN
Sbjct: 657 LGKAMDIING-MPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSN 715

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           IYA AG       VR +M ++ +KK  GYS +EV  K Y F  GD SHP ++ IY  L E
Sbjct: 716 IYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSE 775

Query: 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
           L  R R+ GY P++    H++E+E++E  L +HSE+LA+AFGL+ T P + ++IVKNLR+
Sbjct: 776 LNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRV 835

Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           C DCHS IK +S+   R I+VRD  RFHHFK G CSC DYW
Sbjct: 836 CGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 181/361 (50%), Gaps = 9/361 (2%)

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           +AQ++F   P  D    N L+ R S+ + + ++L  +  +  S +SP +YT S V+  CA
Sbjct: 54  FAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCA 113

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
                 +G  VHC     G    L V  +LV+ Y K+ NV   R+VFD M D+ VV+WNS
Sbjct: 114 GSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNS 173

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           +++GY  N F  +   LF LM+  G  PD  T   V+AA A  G + +G  +H  +V  G
Sbjct: 174 LLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLG 233

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
            +   ++  SLI+M ++ G +  AR +FD M   + ++W +MI+G+ ++G   EA E F+
Sbjct: 234 FETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFN 293

Query: 298 RMRAHGVRPNNVTFVAVLSACA---HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
            M+  G +P + TF +V+ +CA     GLV    RV      + GL         ++   
Sbjct: 294 NMQLAGAKPTHATFASVIKSCASLKELGLV----RVLHCKTLKSGLSTNQNVLTALMVAL 349

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            +   +++A+     + G +   + WTAM+     + + D  V +   L+  E   P H+
Sbjct: 350 TKCKEIDDAFSLFSLMHGVQSVVS-WTAMISGYLQNGDTDQAVNLFS-LMRREGVKPNHF 407

Query: 415 V 415
            
Sbjct: 408 T 408



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 121/408 (29%), Positives = 193/408 (47%), Gaps = 9/408 (2%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH   +  G     S+   L+ +    G +   +R+F  +   D   +N+L+   S  
Sbjct: 122 EQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWN 181

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            F+      +  M V    P  YT S VI + A+   + +G  +H  V   G++++  V 
Sbjct: 182 RFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVC 241

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            +L++  +KS  +  AR VFD M +K  V+WNSMI+G+  NG   EA   FN M+  G  
Sbjct: 242 NSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAK 301

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P   T   V+ +CA L ++ L R +H   +  GL  N  + T+L+    +C  +  A  +
Sbjct: 302 PTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSL 361

Query: 265 FDMMSEL-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           F +M  + +V++WTAMISGY  +G   +AV LF  MR  GV+PN+ T+  +L+   HA  
Sbjct: 362 FSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV-QHAVF 420

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           + E H        E     G      ++D F + G +++A K V ++I  K   A W+AM
Sbjct: 421 ISEIHAEVIKTNYEKSSSVG----TALLDAFVKIGNISDAVK-VFELIETKDVIA-WSAM 474

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
           L         +   ++  H L+ E   P  +   S I A       VE
Sbjct: 475 LAGYAQAGETEEAAKIF-HQLTREGIKPNEFTFCSIINACTAPTASVE 521



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 146/284 (51%), Gaps = 12/284 (4%)

Query: 106 NYTFSAVIKSCAHLSILNLGR-AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           N T  A+  +  +  IL + R  +HCH   +      HV A       + ++   A+++F
Sbjct: 4   NMTLRALTNTSTN-PILRIRRYQLHCH---ANPLLQSHVVALNARTLLRDSDPRFAQQLF 59

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           D+ P + +   N ++  Y +    +EA+ LF  +   G++PDS T  CVL+ CA   +  
Sbjct: 60  DQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGT 119

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
           +G  VH   V  GL  ++ +  SL++MY + GNV   R +FD M + +V++W ++++GY 
Sbjct: 120 VGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYS 179

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
            + +  +  ELF  M+  G RP+  T   V++A A+ G V  G ++ A + +   L    
Sbjct: 180 WNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVK---LGFET 236

Query: 345 EHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           E  VC  ++ +  ++G+L +A + V D +  K + + W +M+  
Sbjct: 237 ERLVCNSLISMLSKSGMLRDA-RVVFDNMENKDSVS-WNSMIAG 278


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/468 (42%), Positives = 298/468 (63%), Gaps = 8/468 (1%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCH---VFVSGYDSDLHVQAALVNFYAKSNNVDVA--RK 162
           +++A+I   AH  +   GRA+      V +     D    A+++    K+   D+A  + 
Sbjct: 190 SWNAMISGFAHAGLF--GRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKG 247

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           VFD M  K +++WN+M++ Y  N    EA+ LF  M+  G+ PD+ T   VL +C ++  
Sbjct: 248 VFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSA 307

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           + LG+ +HE I  + +  +++L  +L++MYA CG + +AR++FD M   +V++WT++IS 
Sbjct: 308 LSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISA 367

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
           YG HG+G EA++LF +M   G+ P+++ FVA+L+AC+HAGL+  G   F SM  E+ + P
Sbjct: 368 YGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAP 427

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
            +EH+ CMVDL GRAG + EAY F+  V+  KP   VW A+LGAC++H N D+G+  A+ 
Sbjct: 428 KLEHYACMVDLLGRAGCIREAYDFIM-VMPIKPNERVWGALLGACRIHSNMDIGLLAADS 486

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
           LL + P+  G+YV+LSNIYA AGR   V +VR++M  KG+KK  G S  E+  + + F +
Sbjct: 487 LLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHI 546

Query: 463 GDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGL 522
           GD SHP +  IY+ L EL+ R RE GY PE E+ +H++EEE++E  L  HSEKLA+AF L
Sbjct: 547 GDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLL 606

Query: 523 MRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
           + T+PG  IRI  NLR C DCH A K IS    REII++D  R H+ K
Sbjct: 607 INTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 654



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 28/275 (10%)

Query: 36  YGRSRSMLTKLLSLVC---DAGFIT---------YAQRIFFCIPSPDSFLFNTLIIRNSK 83
           +GR+  +  +L++L C   DAG +            + I       D   F  LI  N+ 
Sbjct: 204 FGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAM 263

Query: 84  ANFSTDSLL------FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
               T++ +       + RM    I P   T + V+ SC  +S L+LG+ +H  +     
Sbjct: 264 LAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRM 323

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
            S + ++ AL++ YA    +  AR VFD M  + VV+W S+IS Y ++G  +EAI LF  
Sbjct: 324 CSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEK 383

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGR-----WVHEFIVGQGLDVNVVLATSLINMY 252
           M   G+ PDS   V +LAAC+  G +D+G+        EF +   L+        ++++ 
Sbjct: 384 MCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYAC----MVDLL 439

Query: 253 ARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
            R G + +A +   +M  + N   W A++    +H
Sbjct: 440 GRAGCIREAYDFIMVMPIKPNERVWGALLGACRIH 474



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 143/324 (44%), Gaps = 30/324 (9%)

Query: 96  RMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF----VSGYDSDLHVQAALVNFY 151
           R +   + P+ +    ++ SC   + L   RA H  +     +  + +   V+  L+  Y
Sbjct: 5   RSLFPELPPAGHALLRLVDSCRAPAHLRSLRAAHARLLFLLRLPSHPASAAVRVKLIQAY 64

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG--VNPDSTT 209
           A    +  AR V D  PD++ V +N ++ G       ++A+ LF  MR  G    PD  T
Sbjct: 65  AACAALPAARAVLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYT 124

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
               L +CA    + LGR +H      GLD NV +A S I+MYARCG    A ++F+ M 
Sbjct: 125 YPLALKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQ 184

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRA-HGVRPNNVTFVAVLSACAHAGL--VQE 326
             +V++W AMISG+   G    A+++F  + A    +P+  T  ++L +   A +  +  
Sbjct: 185 YRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIAL 244

Query: 327 GHRVFASMRQEYGLLP---------GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
              VF  MR + GL+            E HV  V+LF R           KD  G +P  
Sbjct: 245 LKGVFDEMRFK-GLISWNAMLAVYTNNEMHVEAVELFMR---------MQKD--GIEPDA 292

Query: 378 AVWTAMLGACKMHKNFDLGVEVAE 401
                +L +C       LG  + E
Sbjct: 293 VTLATVLPSCGEVSALSLGKRIHE 316


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/569 (36%), Positives = 329/569 (57%), Gaps = 33/569 (5%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T ++S +   G +  A  +    P+ +   +  LI   S+A  + +++  +  M+   I 
Sbjct: 175 TTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIE 234

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN------- 156
           P   T   ++ +CA L  L  GR++H  V   G      +  AL++ YAK  +       
Sbjct: 235 PDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEV 294

Query: 157 -------------------------VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
                                    VDVAR +FD+M D+ +V +NS+I+GY   G  +EA
Sbjct: 295 FDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREA 354

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           + LF  MR   +  D+ T V +L ACA LG +  GR +H  I  + ++V++ L T+L++M
Sbjct: 355 LLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDM 414

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           Y +CG V +A  +F  MS  +V  W+AMI+G   +G G  A+E F  M+  G +PN+VT+
Sbjct: 415 YLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTY 474

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           +A+L+AC+H+ L+ EG   F  MR  + + P +EH+ CM+DL GR+GLL+EA   V+  +
Sbjct: 475 IAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVR-TM 533

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
             +P   +W ++L AC++HK+ +L    AEHLL +EP+    YV L NIY  + + +   
Sbjct: 534 PMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDAS 593

Query: 432 VVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVP 491
            +R +M ++G+KK  GYS++ V  + + F + D++HP   EI   ++E+  R +  GY P
Sbjct: 594 QIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSP 653

Query: 492 ESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFIS 551
            +     +++EEE+E++L  HSEK+A+AFGL+  +P + + I+KNLR+C DCHSAIK IS
Sbjct: 654 ITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHSAIKLIS 713

Query: 552 VATNREIIVRDRLRFHHFKRGSCSCLDYW 580
              NREIIVRDR RFHHF+ G+CSC D+W
Sbjct: 714 RIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 135/533 (25%), Positives = 232/533 (43%), Gaps = 117/533 (21%)

Query: 19  PR-LKPLQQVHAHLIVAGYGRSRSMLTKLL-SLV-----CDAGFITYAQRIFFCIPSPDS 71
           PR ++   ++HA L+ +G        + LL SLV      D   + YA  +F  +P   +
Sbjct: 9   PRSVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPC-ST 67

Query: 72  FLFNTLIIRNSKANFSTDS-LLFYRRMIVSNISPSNYTFSAVIKSCAH-LSILNLGRAVH 129
           FLF+T +    +A+   +S L+ YRRM  + +    +TF  + K CA   + + L + +H
Sbjct: 68  FLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLH 127

Query: 130 CHVFVSGYDSDLH-VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS----------- 177
              F +   S +  V   +++ Y +      AR+ FD +P K  VAW +           
Sbjct: 128 AACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLL 187

Query: 178 --------------------MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
                               +ISGY + G A EA+  FN M   G+ PD  T + +L+AC
Sbjct: 188 DDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSAC 247

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI------------- 264
           AQL D+  GR +H+ +  +G+ ++  L  +LI+MYA+CG++ +A E+             
Sbjct: 248 AQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSW 307

Query: 265 -------------------FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
                              FD M + +++ + ++I+GY   G   EA+ LF +MR H +R
Sbjct: 308 NAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLR 367

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQ---EYGLLPGVEHHVCMVDLFGRAGLLNE 362
            +N T V++L+ACA  G + +G  + A + Q   E  +  G      ++D++ + G + E
Sbjct: 368 ADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTA----LLDMYLKCGRVEE 423

Query: 363 A---------------------------------YKFVKDVIGEKPAPAVWTAMLGACKM 389
           A                                 Y F   V G +P    + A+L AC  
Sbjct: 424 ASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSH 483

Query: 390 HKNFDLGVEVAEHLLSVEPENP--GHYVMLSNIYALAGRMDR-VEVVRNIMIQ 439
               D G    E +  +    P   HY  + ++   +G +D  +++VR + +Q
Sbjct: 484 SCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQ 536



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 121/254 (47%), Gaps = 2/254 (0%)

Query: 35  GYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFY 94
           G GR       ++   C  G +  A+ +F  +   D   FN+LI          ++LL +
Sbjct: 299 GRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLF 358

Query: 95  RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154
            +M   ++   N+T  +++ +CA L  L  GRA+H  +     + D+++  AL++ Y K 
Sbjct: 359 MQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKC 418

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
             V+ A  VF  M  + V  W++MI+G   NG  K A+  F  M+  G  P+S T + +L
Sbjct: 419 GRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAIL 478

Query: 215 AACAQLGDIDLGR-WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELN 272
            AC+    +D GR +  E  +   +   +     +I++  R G + +A ++   M  + N
Sbjct: 479 TACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPN 538

Query: 273 VIAWTAMISGYGMH 286
            + W +++S   +H
Sbjct: 539 AVIWASILSACRVH 552


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/606 (36%), Positives = 339/606 (55%), Gaps = 36/606 (5%)

Query: 10  AYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQRIFFC 65
           ++  +LKA  +L  L    ++H      G+  +   + + L+++    G I  A+ +F  
Sbjct: 117 SFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDK 176

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           +   D   +N +I   S+       L  Y  M  S   P       V+ +CAH   L+ G
Sbjct: 177 MSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYG 236

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV---------------------- 163
           +A+H  +  +G+    H+Q +LVN YA    + +AR+V                      
Sbjct: 237 KAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKL 296

Query: 164 ---------FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
                    FDRM +K +V W++MISGY ++    EA+ LFN M+   + PD  T + V+
Sbjct: 297 GMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVI 356

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
           +ACA +G +   +W+H +    G    + +  +LI+MYA+CGN+ KARE+F+ M   NVI
Sbjct: 357 SACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVI 416

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
           +W++MI+ + MHG    A+ LFHRM+   + PN VTF+ VL AC+HAGLV+EG + F+SM
Sbjct: 417 SWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSM 476

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
             E+ + P  EH+ CMVDL+ RA  L +A + + + +   P   +W +++ AC+ H   +
Sbjct: 477 INEHRISPQREHYGCMVDLYCRANHLRKAMELI-ETMPFPPNVIIWGSLMSACQNHGEIE 535

Query: 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
           LG   A  LL +EP++ G  V+LSNIYA   R D V +VR +M  KG+ K    S +EV+
Sbjct: 536 LGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVN 595

Query: 455 QKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSE 514
            + ++F M D+ H  ++EIY+ LD ++ + +  GY P +   + +LEEEE++  + +HSE
Sbjct: 596 NEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSE 655

Query: 515 KLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSC 574
           KLAL +GL+       IRIVKNLR+C DCHS +K +S     EI++RDR RFHHF  G C
Sbjct: 656 KLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGIC 715

Query: 575 SCLDYW 580
           SC DYW
Sbjct: 716 SCRDYW 721



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 220/455 (48%), Gaps = 47/455 (10%)

Query: 8   SPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC-----DAGFITYAQRI 62
           SP+ + +L +   L+ ++Q+HA ++ +    S  +L KL+   C         + YA  +
Sbjct: 12  SPSEKGLLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSL 71

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  IP+P +   N L+ + S+     ++L  Y  +  +      ++F  ++K+ + LS L
Sbjct: 72  FSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSAL 131

Query: 123 NLGRAVHCHVFVSG-YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           NLG  +H      G + +D  +Q+AL+  YA    +  AR +FD+M  + VV WN MI G
Sbjct: 132 NLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDG 191

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y QN      + L+  M+  G  PD+     VL+ACA  G++  G+ +H+FI   G  V 
Sbjct: 192 YSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVG 251

Query: 242 VVLATSLINMYARCGNVSKARE-------------------------------IFDMMSE 270
             + TSL+NMYA CG +  ARE                               IFD M E
Sbjct: 252 SHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVE 311

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG-LVQEGHR 329
            +++ W+AMISGY       EA++LF+ M+   + P+ +T ++V+SACA+ G LVQ   +
Sbjct: 312 KDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQA--K 369

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGAC 387
              +   + G    +  +  ++D++ + G L +A    ++V    P   V  W++M+ A 
Sbjct: 370 WIHTYADKNGFGRTLPINNALIDMYAKCGNLVKA----REVFENMPRKNVISWSSMINAF 425

Query: 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
            MH + D  + +  H +  +   P     +  +YA
Sbjct: 426 AMHGDADSAIALF-HRMKEQNIEPNGVTFIGVLYA 459


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/539 (36%), Positives = 310/539 (57%), Gaps = 34/539 (6%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N +I       F  ++L   RRM+ S I    +T+ +VI++CA   +L LG+ VH +V 
Sbjct: 254 YNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYV- 312

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY----------- 182
           +   D   H   +LV+ Y K    D AR +F++MP K +V+WN+++SGY           
Sbjct: 313 LRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKL 372

Query: 183 --------------------EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
                                +NGF +E + LF+ M+  G  P        + +CA LG 
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
              G+  H  ++  G D ++    +LI MYA+CG V +AR++F  M  L+ ++W A+I+ 
Sbjct: 433 YCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAA 492

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
            G HG+G EAV+++  M   G+RP+ +T + VL+AC+HAGLV +G + F SM   Y + P
Sbjct: 493 LGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPP 552

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
           G +H+  ++DL  R+G  ++A   ++  +  KP   +W A+L  C++H N +LG+  A+ 
Sbjct: 553 GADHYARLIDLLCRSGKFSDAESVIES-LPFKPTAEIWEALLSGCRVHGNMELGIIAADK 611

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
           L  + PE+ G Y++LSN++A  G+ + V  VR +M  +G+KK V  S +E++ + + F +
Sbjct: 612 LFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLV 671

Query: 463 GDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE-EREYSLRYHSEKLALAFG 521
            D SHP    +Y YL +L    R  GYVP++   +H++E +  +E  L  HSEK+A+AFG
Sbjct: 672 DDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFG 731

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           LM+  PG TIRI KNLR C DCH+  +F+S    R+II+RDR RFHHF+ G CSC ++W
Sbjct: 732 LMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/488 (23%), Positives = 197/488 (40%), Gaps = 111/488 (22%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD---------- 70
           L+  + VH ++I  G+     +L +L+ + C +  + YA+++F  I  PD          
Sbjct: 30  LQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSG 89

Query: 71  -----------------------SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNY 107
                                  + ++N +I   S  N    ++  + +M      P N+
Sbjct: 90  YCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNF 149

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHV--FVSGYDSDLHVQAALVNFYAKSNN----VDVAR 161
           TF++V+   A L   +  + V  H     SG      V  ALV+ Y+K  +    +  AR
Sbjct: 150 TFASVLAGLA-LVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSAR 208

Query: 162 KVFDRMPDKS--------------------------------VVAWNSMISGYEQNGFAK 189
           KVFD + +K                                 +VA+N+MISGY   GF +
Sbjct: 209 KVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQ 268

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           EA+ +   M   G+  D  T   V+ ACA  G + LG+ VH +++ +  D +     SL+
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLV 327

Query: 250 NMYARCGNVSKAREIFDM-------------------------------MSELNVIAWTA 278
           ++Y +CG   +AR IF+                                M E N+++W  
Sbjct: 328 SLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMI 387

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           MISG   +G+G E ++LF  M+  G  P +  F   + +CA  G    G +  A + +  
Sbjct: 388 MISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLK-I 446

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA--PAVWTAMLGACKMHKNFDLG 396
           G    +     ++ ++ + G++ EA    + V    P      W A++ A   H +    
Sbjct: 447 GFDSSLSAGNALITMYAKCGVVEEA----RQVFRTMPCLDSVSWNALIAALGQHGHGAEA 502

Query: 397 VEVAEHLL 404
           V+V E +L
Sbjct: 503 VDVYEEML 510



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 116/248 (46%), Gaps = 10/248 (4%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LLS    +G I  A+ IF  +   +   +  +I   ++  F  + L  +  M      P 
Sbjct: 357 LLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPC 416

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           +Y FS  IKSCA L     G+  H  +   G+DS L    AL+  YAK   V+ AR+VF 
Sbjct: 417 DYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFR 476

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP    V+WN++I+   Q+G   EA+ ++  M   G+ PD  T + VL AC+  G +D 
Sbjct: 477 TMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQ 536

Query: 226 GRWVHE-----FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAM 279
           GR   +     + +  G D        LI++  R G  S A  + + +  +     W A+
Sbjct: 537 GRKYFDSMETVYRIPPGAD----HYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEAL 592

Query: 280 ISGYGMHG 287
           +SG  +HG
Sbjct: 593 LSGCRVHG 600



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 157/353 (44%), Gaps = 86/353 (24%)

Query: 109 FSAVIKSCAHL--SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR 166
           ++A ++ C  L  + L L RAVH ++   G+    H+   L++ Y KS+ ++ AR++FD 
Sbjct: 15  YAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDE 74

Query: 167 M--PDK-------------------------------SVVAWNSMISGYEQNGFAKEAIG 193
           +  PDK                                 V +N+MI+G+  N     AI 
Sbjct: 75  ISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAIN 134

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV--HEFIVGQGLDVNVVLATSLINM 251
           LF  M+  G  PD+ T   VLA  A + D D  + V  H   +  G      ++ +L+++
Sbjct: 135 LFCKMKHEGFKPDNFTFASVLAGLALVAD-DEKQCVQFHAAALKSGAGYITSVSNALVSV 193

Query: 252 YARCGN----VSKAREIFD--------------------------------MMSELNVIA 275
           Y++C +    +  AR++FD                                M   + ++A
Sbjct: 194 YSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVA 253

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM- 334
           + AMISGY   G+  EA+E+  RM + G+  +  T+ +V+ ACA AGL+Q G +V A + 
Sbjct: 254 YNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVL 313

Query: 335 -RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAML 384
            R+++           +V L+ + G  +EA    + +  + PA  +  W A+L
Sbjct: 314 RREDFSF----HFDNSLVSLYYKCGKFDEA----RAIFEKMPAKDLVSWNALL 358


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/536 (36%), Positives = 319/536 (59%), Gaps = 11/536 (2%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI-SP 104
           ++S     G ++ A+R+F   P  D F +  ++       +  D +L   R +   +   
Sbjct: 225 MISGYAQDGDLSQARRLFEESPVRDVFTWTAMVY-----AYVQDGMLDEARRVFDEMPQK 279

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
              +++ +I   A    +++GR     +F      ++     +++ Y ++ ++  AR +F
Sbjct: 280 REMSYNVMIAGYAQYKRMDMGR----ELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLF 335

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           D MP +  V+W ++I+GY QNG  +EA+ +   M+  G + + +T  C L+ACA +  ++
Sbjct: 336 DMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALE 395

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
           LG+ VH  +V  G +   ++  +L+ MY +CG + +A ++F  +   ++++W  M++GY 
Sbjct: 396 LGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYA 455

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
            HG+G +A+ +F  M   GV+P+ +T V VLSAC+H GL   G   F SM ++YG+ P  
Sbjct: 456 RHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNS 515

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           +H+ CM+DL GRAG L EA   ++++  E P  A W A+LGA ++H N +LG + AE + 
Sbjct: 516 KHYACMIDLLGRAGCLEEAQNLIRNMPFE-PDAATWGALLGASRIHGNMELGEQAAEMVF 574

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
            +EP N G YV+LSN+YA +GR   V  +R  M Q G++K  GYS VEV  K + F++GD
Sbjct: 575 KMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGD 634

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
             HP    IY +L+EL  + +  GYV  ++  +H++EEEE+++ L+YHSEKLA+AFG++ 
Sbjct: 635 CFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGILT 694

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
              G  IR++KNLR+C DCH+AIK IS    R IIVRD  R+HHF  G CSC DYW
Sbjct: 695 MPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 162/346 (46%), Gaps = 33/346 (9%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVS 100
           TK +S     G    A  +F  +P  +S  +N +I   +RN+K + + D    + +M   
Sbjct: 37  TKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARD---LFDKMPHK 93

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
           ++    ++++ ++   A    L   R +    F S  + D+    A+++ Y +S +VD A
Sbjct: 94  DL----FSWNLMLTGYARNRRLRDARML----FDSMPEKDVVSWNAMLSGYVRSGHVDEA 145

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
           R VFDRMP K+ ++WN +++ Y ++G  +EA  LF    D+ +     +C C++    + 
Sbjct: 146 RDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWEL----ISCNCLMGGYVKR 201

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             +   R + + I  + L    +   ++I+ YA+ G++S+AR +F+     +V  WTAM+
Sbjct: 202 NMLGDARQLFDQIPVRDL----ISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMV 257

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
             Y   G   EA  +F  M     +   +++  +++  A    +  G  +F  M      
Sbjct: 258 YAYVQDGMLDEARRVFDEM----PQKREMSYNVMIAGYAQYKRMDMGRELFEEMP----- 308

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
            P +     M+  + + G L +A     D++ ++ + + W A++  
Sbjct: 309 FPNIGSWNIMISGYCQNGDLAQARNLF-DMMPQRDSVS-WAAIIAG 352



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 95/241 (39%), Gaps = 37/241 (15%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH  ++  GY +   +   L+ + C  G I  A  +F  +   D   +NT++   ++ 
Sbjct: 398 KQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARH 457

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            F   +L  +  MI + + P   T   V+ +C+H  + + G                   
Sbjct: 458 GFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTE----------------- 500

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
                 Y  S N D     +   P+    A   MI    + G  +EA    NL+R+    
Sbjct: 501 ------YFHSMNKD-----YGITPNSKHYA--CMIDLLGRAGCLEEAQ---NLIRNMPFE 544

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG---NVSKA 261
           PD+ T   +L A    G+++LG    E +       N  +   L N+YA  G   +VSK 
Sbjct: 545 PDAATWGALLGASRIHGNMELGEQAAEMVFKMEPH-NSGMYVLLSNLYAASGRWVDVSKM 603

Query: 262 R 262
           R
Sbjct: 604 R 604


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/424 (45%), Positives = 277/424 (65%), Gaps = 2/424 (0%)

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
           D A  +F  MP + VV+WNSM++ Y Q G   EA+ LF+ MR  GV P   T V +L+AC
Sbjct: 165 DDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSAC 224

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
           A LG +D G  +H +I    ++VN ++ T+L++MYA+CG +S A ++F+ M   +V+AW 
Sbjct: 225 AHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWN 284

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
            +I+G  +HG+  EA  LF  M+  GV PN++TFVA+LSAC+HAG+V EG ++   M   
Sbjct: 285 TIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSS 344

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
           YG+ P VEH+ C++DL  RAGLL EA + +  +  E P P    A+LG C++H NF+LG 
Sbjct: 345 YGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPME-PNPCALGALLGGCRIHGNFELGE 403

Query: 398 EVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKN 457
            V + L++++P + G Y++LSNIYA A + D    VRN+M   G+ K  G S +E+    
Sbjct: 404 MVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMV 463

Query: 458 YLFSMGDKSHPNTNEIYQYLDELMGRCREA-GYVPESESAMHELEEEEREYSLRYHSEKL 516
           + F  GD SHP +N+IY+ L+E+  R + A G+  ++   + ++EEE++E++L  HSEKL
Sbjct: 464 HRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHSEKL 523

Query: 517 ALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSC 576
           A+A+GL+       IRIVKNLR+C DCH   K IS    REIIVRDR RFHHF+ G CSC
Sbjct: 524 AIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGECSC 583

Query: 577 LDYW 580
           LD+W
Sbjct: 584 LDFW 587



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 128/238 (53%), Gaps = 7/238 (2%)

Query: 57  TYAQR-----IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA 111
           T+ +R     +F  +P  D   +N+++   ++     ++L  + +M    + P+  T  +
Sbjct: 160 TFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVS 219

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           ++ +CAHL  L+ G  +H ++  +  + +  V  ALV+ YAK   + +A +VF+ M  K 
Sbjct: 220 LLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKD 279

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           V+AWN++I+G   +G  KEA  LF  M++ GV P+  T V +L+AC+  G +D G+ + +
Sbjct: 280 VLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLD 339

Query: 232 FIVGQ-GLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHG 287
            +    G++  V     +I++ AR G + +A E+   M  E N  A  A++ G  +HG
Sbjct: 340 CMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHG 397



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 103/240 (42%), Gaps = 45/240 (18%)

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           V EF    G+D  V L   + N     G    A  +F  M   +V++W +M++ Y   G 
Sbjct: 136 VAEFCNEVGVDKGV-LKVWMHNNKNTFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGK 194

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGVE 345
             EA+ LF +MRA GV+P   T V++LSACAH G + +G   H      R E   + G  
Sbjct: 195 PNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG-- 252

Query: 346 HHVCMVDLFGRAGLLNEAYKFV-----KDVI----------------------------G 372
               +VD++ + G ++ A +       KDV+                            G
Sbjct: 253 --TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAG 310

Query: 373 EKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS---VEPENPGHYVMLSNIYALAGRMDR 429
            +P    + AML AC      D G ++ + + S   +EP+   HY  + ++ A AG ++ 
Sbjct: 311 VEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVE-HYGCVIDLLARAGLLEE 369


>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 651

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/561 (37%), Positives = 336/561 (59%), Gaps = 6/561 (1%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGFITYAQRIFFCIPS-PD 70
           +L+    +  L+++H+H+I+ G     S+   LL    V   G ++YAQ +F    S P 
Sbjct: 11  MLQGCNSMNKLRKIHSHVIINGLHHHPSIFNHLLRFCAVSVNGSLSYAQLLFDRFDSDPS 70

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS-PSNYTFSAVIKSCAHLSILNLGRAVH 129
           +  +N LI   S ++    ++L+Y RM++S++S P  +TFS  +K+C  + ++     +H
Sbjct: 71  TSAWNYLIRGFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKCLELH 130

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
             V  SG+ +D  V   LV  Y+ + +V++A KVFD MP + +V+WN+MIS +   G   
Sbjct: 131 GSVIRSGFLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHAGLHH 190

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           +A  +++ M + GV  D+ T V +L++CA +  +++G  +H        + +V +  +LI
Sbjct: 191 QAFSMYSRMANEGVCVDAYTIVALLSSCAHVSALNMGVMLHRIACDIRCESSVFVCNALI 250

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           +MYA+CG++  A  +F  M + +V+ W +MI GYG+HG+G EA+  F +M A GVRPN V
Sbjct: 251 DMYAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAV 310

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
           TF+ +L  C+H GLV+EG   F  M  ++ L P V+H+ CMVDLFGRAG L +A + +  
Sbjct: 311 TFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLFGRAGQLEKALEMIHT 370

Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
               +  P +W  +LG+CK+H+N +LG    + L+ +E  N G YV++++IY+ A     
Sbjct: 371 SSCHED-PVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQG 429

Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
              +R ++    L+   G+S +E+  + + F + DK HP +  IY  L E++ R   AGY
Sbjct: 430 FASMRKLIRSHDLRTIPGWSWIEIGDQVHKFVIDDKMHPESALIYSELGEVINRAILAGY 489

Query: 490 VPE-SESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
            PE S    H L +   E +   HSEKLA+A+GLMRT+ G T+RI KNLR+C DCHS  K
Sbjct: 490 KPEDSNRTAHTLSDRCLESADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTK 549

Query: 549 FISVATNREIIVRDRLRFHHF 569
           ++S A NREIIVRDR+RFH F
Sbjct: 550 YVSKAFNREIIVRDRVRFHQF 570


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/545 (38%), Positives = 320/545 (58%), Gaps = 23/545 (4%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNI 102
           T ++  +C  G +  A+ IF  +       + T++    + N   D+   +  M   + +
Sbjct: 176 TSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEV 235

Query: 103 SPSN----YTFSAVIKSCAHL-SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
           S ++    Y  +  I+    L  ++ +   + C+  +SG                +   +
Sbjct: 236 SWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGL--------------GQKGEI 281

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
             AR+VFD M +++  +W ++I  +E+NGF  EA+ LF LM+  GV P   T + +L+ C
Sbjct: 282 AKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVC 341

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
           A L  +  G+ VH  +V    DV+V +A+ L+ MY +CG + K++ IFD     ++I W 
Sbjct: 342 ASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWN 401

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           ++ISGY  HG G EA+++F  M   G  +PN VTFVA LSAC++AG+V+EG +++ SM  
Sbjct: 402 SIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMES 461

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
            +G+ P   H+ CMVD+ GRAG  NEA + + D +  +P  AVW ++LGAC+ H   D+ 
Sbjct: 462 VFGVKPITAHYACMVDMLGRAGRFNEAMEMI-DSMTVEPDAAVWGSLLGACRTHSQLDVA 520

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQK 456
              A+ L+ +EPEN G Y++LSN+YA  GR   V  +R +M  + ++K  G S  EV+ K
Sbjct: 521 EFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENK 580

Query: 457 NYLFSMGD-KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEK 515
            + F+ G   SHP    I + LDEL G  REAGY P+   A+H+++EEE+  SL+YHSE+
Sbjct: 581 VHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSER 640

Query: 516 LALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCS 575
           LA+A+ L++ S G+ IR++KNLR+C DCH+AIK IS    REII+RD  RFHHF+ G CS
Sbjct: 641 LAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECS 700

Query: 576 CLDYW 580
           C DYW
Sbjct: 701 CKDYW 705



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 97/427 (22%), Positives = 185/427 (43%), Gaps = 62/427 (14%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFS 110
           G I  A+++F  +P  +   +  L+   + N K + +    LF++        P     S
Sbjct: 93  GEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAES--LFWKM-------PEKNKVS 143

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
             +     L    +  A  C ++    D D   + ++++   K   VD AR++FD M ++
Sbjct: 144 WTVMLIGFLQDGRIDDA--CKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSER 201

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST--TCVCVLAACAQLGDIDLGRW 228
           SV+ W +M++GY QN    +A  +F++M      P+ T  +   +L    Q G I+    
Sbjct: 202 SVITWTTMVTGYGQNNRVDDARKIFDVM------PEKTEVSWTSMLMGYVQNGRIEDAEE 255

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           + E +  +     V+   ++I+   + G ++KAR +FD M E N  +W  +I  +  +G+
Sbjct: 256 LFEVMPVKP----VIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGF 311

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM-------------- 334
             EA++LF  M+  GVRP   T +++LS CA    +  G +V A +              
Sbjct: 312 ELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASV 371

Query: 335 --------------RQEYGLLPGVEHHV--CMVDLFGRAGLLNEAYKFVKDVI---GEKP 375
                         +  +   P  +  +   ++  +   GL  EA K   ++      KP
Sbjct: 372 LMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKP 431

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP--GHYVMLSNIYALAGRMDR-VEV 432
               + A L AC      + G+++ E + SV    P   HY  + ++   AGR +  +E+
Sbjct: 432 NEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEM 491

Query: 433 VRNIMIQ 439
           + ++ ++
Sbjct: 492 IDSMTVE 498



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 12/197 (6%)

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
           D ++     LV+ Y K+  +D ARKVFD MP+++VV+W +++ GY  NG    A  LF  
Sbjct: 76  DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWK 135

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M +     +  +   +L    Q G ID    ++E I     D + +  TS+I+   + G 
Sbjct: 136 MPE----KNKVSWTVMLIGFLQDGRIDDACKLYEMIP----DKDNIARTSMIHGLCKEGR 187

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           V +AREIFD MSE +VI WT M++GYG +    +A ++F  M         V++ ++L  
Sbjct: 188 VDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMP----EKTEVSWTSMLMG 243

Query: 318 CAHAGLVQEGHRVFASM 334
               G +++   +F  M
Sbjct: 244 YVQNGRIEDAEELFEVM 260



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 23/252 (9%)

Query: 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
           ARK+FD    KS+ +WNSM++GY  N   ++A  LF+ M D  +     +   +++   +
Sbjct: 36  ARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI----ISWNGLVSGYMK 91

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
            G+ID  R V + +  +    NVV  T+L+  Y   G V  A  +F  M E N ++WT M
Sbjct: 92  NGEIDEARKVFDLMPER----NVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVM 147

Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
           + G+   G   +A +L+  +       +N+   +++      G V E   +F  M +   
Sbjct: 148 LIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDEAREIFDEMSER-- 201

Query: 340 LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
               V     MV  +G+   +++A K   DV+ EK     WT+ML    M    +  +E 
Sbjct: 202 ---SVITWTTMVTGYGQNNRVDDARKIF-DVMPEK-TEVSWTSML----MGYVQNGRIED 252

Query: 400 AEHLLSVEPENP 411
           AE L  V P  P
Sbjct: 253 AEELFEVMPVKP 264


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/536 (38%), Positives = 322/536 (60%), Gaps = 7/536 (1%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA-NFSTDSLLFYRRMIVSNISP 104
           L+S+    G +  A  +F  +P  +   + T++   + A     ++L F   M    ++ 
Sbjct: 113 LVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDGVAA 172

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           ++YTFS+V+ +C    +L    A+H  +   G DSD+ V+++L++ Y K  ++D  R VF
Sbjct: 173 NSYTFSSVLGACGTPGVLA---AMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVF 229

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           D M    +V WNS+I+G+ Q+G    A+ LF  M++ G   +  T   VL AC  +  ++
Sbjct: 230 DEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLE 289

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
           +GR VH  ++    D +++L  +L++MY +CG +  A  +F  M + +VI+W+ MISG  
Sbjct: 290 VGRQVHAHVLK--YDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLA 347

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
            +G   EA+++F  M+A G  PNN+T V VL AC+HAGLV++G   F SM + +G+ P  
Sbjct: 348 QNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPER 407

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           EH  CMVDL GRAG L+EA KF+ ++  E P   +W  +LGAC+MHKN  L    A  +L
Sbjct: 408 EHCNCMVDLLGRAGKLDEAMKFIGEMKFE-PDSVIWRTLLGACRMHKNATLASYAATEIL 466

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
            +EPE+ G  ++LSNIYA   +    E     M  +G+KK  G S +E+ +  ++F  G+
Sbjct: 467 KLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIAGE 526

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
            SHP ++ I Q L+ L+ R ++ GYVP++E  + +L  E++E  L+YHSEKLA+AFG M 
Sbjct: 527 LSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAIAFGTMN 586

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +  G  +RI+KNLR+C DCH+  K +S    + II+RD +RFHHF+ G CSC DYW
Sbjct: 587 SMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 164/348 (47%), Gaps = 28/348 (8%)

Query: 88  TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV------SGYDSDL 141
           T +L     +  + +     +   +IK C     +  GRA+H HV +            L
Sbjct: 48  TAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGATHGSL 107

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN-GFAKEAIGLFNLMRD 200
            V  +LV+ YAK   +D A ++F  MP ++VV+W ++++      G  KEA+     MR 
Sbjct: 108 FVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRR 167

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            GV  +S T   VL AC   G +     +H  I+  GLD +V + +SLI+ Y + G++  
Sbjct: 168 DGVAANSYTFSSVLGACGTPGVLAA---MHADIIKVGLDSDVFVRSSLIDAYMKLGDLDS 224

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
            R +FD M   +++ W ++I+G+   G G  A+ELF RM+  G   N  T  +VL AC  
Sbjct: 225 GRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTG 284

Query: 321 AGLVQEGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV-----KDVIGEK 374
             +++ G +V A  ++ +  L+     H  ++D++ + G L +A         +DVI   
Sbjct: 285 MVMLEVGRQVHAHVLKYDRDLIL----HNALLDMYCKCGCLLDADALFSRMHDRDVIS-- 338

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
                W+ M+     +      ++V + L+  E   P +  M+  ++A
Sbjct: 339 -----WSTMISGLAQNGRSVEALKVFD-LMKAEGPTPNNITMVGVLFA 380



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 145/290 (50%), Gaps = 8/290 (2%)

Query: 7   HSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
           +S  + ++L A      L  +HA +I  G      + + L+      G +   + +F  +
Sbjct: 173 NSYTFSSVLGACGTPGVLAAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEM 232

Query: 67  PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
            + D  ++N++I   +++     ++  + RM  S    +  T ++V+++C  + +L +GR
Sbjct: 233 VTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGR 292

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            VH HV    YD DL +  AL++ Y K   +  A  +F RM D+ V++W++MISG  QNG
Sbjct: 293 QVHAHVL--KYDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNG 350

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ---GLDVNVV 243
            + EA+ +F+LM+  G  P++ T V VL AC+  G ++ G W H F       G+     
Sbjct: 351 RSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDG-W-HYFRSMDKLFGIQPERE 408

Query: 244 LATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMHGYGTEA 292
               ++++  R G + +A + I +M  E + + W  ++    MH   T A
Sbjct: 409 HCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLA 458


>gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 701

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/580 (36%), Positives = 342/580 (58%), Gaps = 12/580 (2%)

Query: 10  AYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
            Y+A+++A  RLK +   ++V+  +I  G+   + M+ ++L +    G I  A+R+F  +
Sbjct: 125 TYDALVEACIRLKSIRCVKRVYGFIISNGFEPEKYMMNRILLMHVKCGMIIDARRLFDEM 184

Query: 67  PSPDSFLFNTLIIRNSKANFST--DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
           P  + F +N++I  +   NF    ++   ++ M         +TF+ ++++ A L  + +
Sbjct: 185 PERNLFSYNSII--SGFVNFGNYEEAFELFKLMWEELSDCETHTFAVMLRASAGLWSVYV 242

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G+ +H      G   +  V   L++ Y+K  +++ AR  F+ MP+K+ VAWN++++GY  
Sbjct: 243 GKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFESMPEKTTVAWNNIVAGYAL 302

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           +G+++EA+ L   MRD GV+ D  T   ++    +L  ++L +  H  ++  G +  +V 
Sbjct: 303 HGYSEEALCLLYEMRDSGVSMDQFTLSIMIRISTRLAKLELTKQAHASLIRSGFESEIVA 362

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
            T+L++ Y++ G V  AR +FD +   N+I+W A++ GY  HG GT+AV LF RM A  V
Sbjct: 363 NTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVRLFERMIAAKV 422

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
            PN+VTF+AVLSACA++GL ++G  +F SM + +G+ P   H+ CM++L GR GLL+EA 
Sbjct: 423 APNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAI 482

Query: 365 KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
            F++     K    +W A+L AC+M  N +LG  VAE L  + PE  G+YV+L N+Y   
Sbjct: 483 AFIRRA-PLKTTVNMWAALLNACRMQGNLELGRVVAEKLYGMGPEKLGNYVVLYNMYNSM 541

Query: 425 GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK--SHPNT--NEIYQYLDEL 480
           G+      V   +  KGL      + VEV  + + F  GD+  S+  T   E+YQ +DEL
Sbjct: 542 GKTAEAAGVLETLESKGLSMIPACTWVEVGDQTHSFLSGDRFDSYNETVKREVYQKVDEL 601

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
           M    E GY+ E ++ + +++E+E E   RYHSEKLA+A+GLM T     ++I +N R+C
Sbjct: 602 MEEIYEYGYLAEEKNLLPDVDEKEEERVGRYHSEKLAIAYGLMNTPEWNPLQITQNHRIC 661

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH  ++FIS+ T RE++VRD  RFHHFK G CSC  YW
Sbjct: 662 KDCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 121/275 (44%), Gaps = 19/275 (6%)

Query: 189 KEAIGLFNLMR---DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           +EA  LF ++     F V    +T   ++ AC +L  I   + V+ FI+  G +    + 
Sbjct: 104 REAFELFEILEIRCSFKVGV--STYDALVEACIRLKSIRCVKRVYGFIISNGFEPEKYMM 161

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
             ++ M+ +CG +  AR +FD M E N+ ++ ++ISG+   G   EA ELF  M      
Sbjct: 162 NRILLMHVKCGMIIDARRLFDEMPERNLFSYNSIISGFVNFGNYEEAFELFKLMWEELSD 221

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
               TF  +L A A    V  G ++     +  G++        ++D++ + G + +A +
Sbjct: 222 CETHTFAVMLRASAGLWSVYVGKQLHVCALK-LGVVDNTFVSCGLIDMYSKCGDIEDA-R 279

Query: 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG---HYVMLSNIYA 422
              + + EK   A W  ++    +H     G       L  E  + G       LS +  
Sbjct: 280 CAFESMPEKTTVA-WNNIVAGYALH-----GYSEEALCLLYEMRDSGVSMDQFTLSIMIR 333

Query: 423 LAGRMDRVEVVRNI---MIQKGLKKHVGYSTVEVD 454
           ++ R+ ++E+ +     +I+ G +  +  +T  VD
Sbjct: 334 ISTRLAKLELTKQAHASLIRSGFESEIVANTALVD 368


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/576 (37%), Positives = 335/576 (58%), Gaps = 16/576 (2%)

Query: 14  ILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           ILK   + K L Q    HA +++ G          L+++    G + +A+++F  +PS  
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 71  SFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
              +NT+I    +N + N + D LL  +R        S +T S+V+ +CA    L+  + 
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQR---EGTPFSEFTISSVLCACAAKCALSECQL 186

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H     +  D ++ V  AL++ YAK   +  A  VF+ MPD+SVV W+SM +GY QN  
Sbjct: 187 LHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEM 246

Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
            ++A+ LF    + G+  D      V+ ACA L  +  G+ V+  +   G   N+ +A+S
Sbjct: 247 YEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASS 306

Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
           LI+MYA+CG + ++ ++F  + + NV+ W AMISG   H    E + LF +M+  G+ PN
Sbjct: 307 LIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPN 366

Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
           +VTFV+VLSAC H GLV++G + F  M +E+ L P V H+ CMVD   RAG + EAY   
Sbjct: 367 DVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAY--- 423

Query: 368 KDVIGEKP---APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
            D+I + P   + ++W ++L +C+ H N +L    A+ L  +EP N G+Y++LSN+YA  
Sbjct: 424 -DLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAAN 482

Query: 425 GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRC 484
           G+ D V  +R ++ +  +KK  G S +E+  K +LF +G+++HP   EIY  L+E+M   
Sbjct: 483 GKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDEL 542

Query: 485 REAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544
           ++ GY  E++  +H++ E  ++  LR+HSEKLA   GL+   P   IRI+KNLR+C DCH
Sbjct: 543 QKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCH 602

Query: 545 SAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           S +K  S    R++IVRD  RFHHFK G CSC D+W
Sbjct: 603 SFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/468 (42%), Positives = 298/468 (63%), Gaps = 8/468 (1%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCH---VFVSGYDSDLHVQAALVNFYAKSNNVDVA--RK 162
           +++A+I   AH  +   GRA+      V +     D    A+++    K+   D+A  + 
Sbjct: 80  SWNAMISGFAHAGLF--GRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKG 137

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           VFD M  K +++WN+M++ Y  N    EA+ LF  M+  G+ PD+ T   VL +C ++  
Sbjct: 138 VFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSA 197

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           + LG+ +HE I  + +  +++L  +L++MYA CG + +AR++FD M   +V++WT++IS 
Sbjct: 198 LSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISA 257

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
           YG HG+G EA++LF +M   G+ P+++ FVA+L+AC+HAGL+  G   F SM  E+ + P
Sbjct: 258 YGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAP 317

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
            +EH+ CMVDL GRAG + EAY F+  V+  KP   VW A+LGAC++H N D+G+  A+ 
Sbjct: 318 KLEHYACMVDLLGRAGCIREAYDFIM-VMPIKPNERVWGALLGACRIHSNMDIGLLAADS 376

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
           LL + P+  G+YV+LSNIYA AGR   V +VR++M  KG+KK  G S  E+  + + F +
Sbjct: 377 LLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHI 436

Query: 463 GDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGL 522
           GD SHP +  IY+ L EL+ R RE GY PE E+ +H++EEE++E  L  HSEKLA+AF L
Sbjct: 437 GDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLL 496

Query: 523 MRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
           + T+PG  IRI  NLR C DCH A K IS    REII++D  R H+ K
Sbjct: 497 INTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 544



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 28/275 (10%)

Query: 36  YGRSRSMLTKLLSLVC---DAGFIT---------YAQRIFFCIPSPDSFLFNTLIIRNSK 83
           +GR+  +  +L++L C   DAG +            + I       D   F  LI  N+ 
Sbjct: 94  FGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAM 153

Query: 84  ANFSTDSLL------FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
               T++ +       + RM    I P   T + V+ SC  +S L+LG+ +H  +     
Sbjct: 154 LAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRM 213

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
            S + ++ AL++ YA    +  AR VFD M  + VV+W S+IS Y ++G  +EAI LF  
Sbjct: 214 CSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEK 273

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGR-----WVHEFIVGQGLDVNVVLATSLINMY 252
           M   G+ PDS   V +LAAC+  G +D+G+        EF +   L+        ++++ 
Sbjct: 274 MCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLE----HYACMVDLL 329

Query: 253 ARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
            R G + +A +   +M  + N   W A++    +H
Sbjct: 330 GRAGCIREAYDFIMVMPIKPNERVWGALLGACRIH 364



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 1/107 (0%)

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           +CA    + LGR +H      GLD NV +A S I+MYARCG    A ++F+ M   +V++
Sbjct: 21  SCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVS 80

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRA-HGVRPNNVTFVAVLSACAHA 321
           W AMISG+   G    A+++F  + A    +P+  T  ++L +   A
Sbjct: 81  WNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKA 127


>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g47530-like [Glycine max]
          Length = 515

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/512 (40%), Positives = 314/512 (61%), Gaps = 6/512 (1%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV--HCH 131
           +NT+I   S ++     LL YR M    I+    + S V+KSC  L  L L   V  HC+
Sbjct: 5   YNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFVVKSCIRLXGLYLLGGVQVHCN 64

Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
           +F  G+  D  +  A+++ Y+       A KVFD MP +  VAWN MIS   +N   ++A
Sbjct: 65  IFKYGHQWDTLLLTAVMDLYSXCQRGGDACKVFDEMPPRDTVAWNVMISCCIRNNRTRDA 124

Query: 192 IGLFNLMRD--FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           + LF+++++  +   PD  TC+ +L ACA L  ++ G  +H +++  G    + L+ +LI
Sbjct: 125 LSLFDVLQNSSYKCEPDDVTCLLLLQACAHLYALEFGERIHGYMMEHGYGGALNLSNALI 184

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           +MY+RCG + KA E+F      NV++W+AMISG  M+GYG EA+E F  M   G+RP++ 
Sbjct: 185 SMYSRCGCLDKAXEVFKGTGNKNVVSWSAMISGLAMNGYGREAIESFEEMLRIGIRPDDQ 244

Query: 310 TFVAVLSACAHAGLVQEGH-RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
           T   VLSAC+++G+V EG    F  M +E+G+ P V H+ CMVDL G AGLL++A + + 
Sbjct: 245 TLTGVLSACSYSGMVDEGMMSFFDRMSREFGVTPNVHHYGCMVDLLGHAGLLDKAXQLIM 304

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
            ++ EKP    W  +LGAC++H +  LG  V  HL+ ++ +  G +V+L NIY+ AG  +
Sbjct: 305 SMV-EKPDSTTWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDHVLLLNIYSSAGHWE 363

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488
           +V  VR +M  K ++   G ST+E+    + F + D SH   +EIY+ LDE+  + R AG
Sbjct: 364 KVAEVRKLMKNKSIQTTPGCSTIELKGVVHEFVVDDVSHTRNHEIYETLDEINHQLRIAG 423

Query: 489 YVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           YV E  S +H+++++E+ Y L +HSEKLA+AFG++ T PG T+R+  NLR+CVDC + +K
Sbjct: 424 YVVELSSELHKMDDKEKGYVLSHHSEKLAIAFGVLATPPGTTLRVANNLRICVDCFNFLK 483

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             S   N ++I+RD  RFHHF+ G CSC +YW
Sbjct: 484 HFSGVYNGDVILRDHNRFHHFRGGCCSCSNYW 515



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 115/275 (41%), Gaps = 42/275 (15%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P       +L+A   L  L+   ++H +++  GYG + ++   L+S+    G +  A  
Sbjct: 139 EPDDVTCLLLLQACAHLYALEFGERIHGYMMEHGYGGALNLSNALISMYSRCGCLDKAXE 198

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F    + +   ++ +I   +   +  +++  +  M+   I P + T + V+ +C++  +
Sbjct: 199 VFKGTGNKNVVSWSAMISGLAMNGYGREAIESFEEMLRIGIRPDDQTLTGVLSACSYSGM 258

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           ++ G                     +++F+      D   + F   P+  V  +  M+  
Sbjct: 259 VDEG---------------------MMSFF------DRMSREFGVTPN--VHHYGCMVDL 289

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
               G   +A  L   M +    PDSTT   +L AC   G + LG    E ++G  +++ 
Sbjct: 290 LGHAGLLDKAXQLIMSMVE---KPDSTTWRTLLGACRIHGHVTLG----ERVIGHLIELK 342

Query: 242 VVLATS---LINMYARCGNVSKAREIFDMMSELNV 273
              A     L+N+Y+  G+  K  E+  +M   ++
Sbjct: 343 AQEAGDHVLLLNIYSSAGHWEKVAEVRKLMKNKSI 377


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/586 (34%), Positives = 331/586 (56%), Gaps = 31/586 (5%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI------ 78
           +Q+H  +I  G+     + + LL +    G I+ A+++F+ +   ++ ++NTL+      
Sbjct: 156 KQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLAC 215

Query: 79  -----------------------IRNSKAN-FSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
                                  I+    N    +++  +R M +  +    Y F +V+ 
Sbjct: 216 GMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLP 275

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           +C  L  +N GR +H  +  +     ++V +AL++ Y K   +  A+ VFDRM  K+VV+
Sbjct: 276 ACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS 335

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           W +M+ GY Q G A EA+ +F  M+  G++PD  T    ++ACA +  ++ G   H   +
Sbjct: 336 WTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAI 395

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             GL   + ++ SL+ +Y +CG++  +  +F+ M+  + ++WTAM+S Y   G   EA++
Sbjct: 396 TAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQ 455

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
           LF +M   G++P+ VT   V+SAC+ AGLV++G R F  M  EYG++P   H+ CM+DLF
Sbjct: 456 LFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLF 515

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            R+G + EA  F+   +  +P    WT +L AC+   N ++G   AE L+ ++P +P  Y
Sbjct: 516 SRSGRIEEAMGFING-MPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGY 574

Query: 415 VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIY 474
            +LS+IYA  G+ D V  +R  M +K ++K  G S ++   K + FS  D+S P +++IY
Sbjct: 575 TLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIY 634

Query: 475 QYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIV 534
             L+EL  +  + GY P++    H++EE  +   L  HSE+LA+AFGL+    G+ IR+ 
Sbjct: 635 AKLEELYQKIIDNGYKPDTSFVHHDVEEAVKIKMLNCHSERLAIAFGLIFVPSGLPIRVG 694

Query: 535 KNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KNLR+CVDCH+A K IS  T REI+VRD +RFH FK G+CSC D+W
Sbjct: 695 KNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 740



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/470 (24%), Positives = 210/470 (44%), Gaps = 100/470 (21%)

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM-----IVSNISPSNYTFSAV 112
           YA+R+F  IP P+ F +N L++  SK+   ++    + ++     +  N+    Y+ S +
Sbjct: 56  YARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGL 115

Query: 113 IKSCAH------------------LSIL---------NLGRAVHCHVFVSGYDSDLHVQA 145
           + +                     +++L         +LG+ +H  V   G++S L V +
Sbjct: 116 VGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGS 175

Query: 146 ALVNFYAKSNNVDVARKVFDRMPD------------------------------KSVVAW 175
            L++ Y+K   +  A+KVF  + D                              K  V+W
Sbjct: 176 PLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSW 235

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           ++MI G  QNG  KEAI  F  M+  G+  D      VL AC  LG I+ GR +H  I+ 
Sbjct: 236 SAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIR 295

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
             L  ++ + ++LI+MY +C  +  A+ +FD M + NV++WTAM+ GYG  G   EAV++
Sbjct: 296 TNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKI 355

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355
           F  M+  G+ P++ T    +SACA+   ++EG + F       GL+  +     +V L+G
Sbjct: 356 FLDMQRSGIDPDHYTLGQAISACANISSLEEGSQ-FHGKAITAGLIHYITVSNSLVTLYG 414

Query: 356 RAGLLNEAYKFVKDV---------------------------------IGEKPAPAVWTA 382
           + G ++++ +   ++                                 +G KP     T 
Sbjct: 415 KCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTG 474

Query: 383 MLGACKMHKNFDLGVEVAEHLLS---VEPENPGHYVMLSNIYALAGRMDR 429
           ++ AC      + G    E +++   + P N GHY  + ++++ +GR++ 
Sbjct: 475 VISACSRAGLVEKGQRYFELMINEYGIVPSN-GHYSCMIDLFSRSGRIEE 523


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/547 (37%), Positives = 328/547 (59%), Gaps = 10/547 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH H++ +G+     ++  L+ L  +   +  A+++F      D   +N +I    K   
Sbjct: 22  VHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGE 81

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
              + + + RM+  ++     +++ +I   A +  ++  +     +F    + +L    +
Sbjct: 82  MGHTRMVFDRMVCRDV----ISWNTIINGYAIVGKIDEAK----RLFDEMPERNLVSWNS 133

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           +++ + K  NV+ A  +F  MP + VV+WNSM++ Y Q G   EA+ LF+ MR  GV P 
Sbjct: 134 MLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPT 193

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T V +L+ACA LG +D G  +H +I    ++VN ++ T+L++MYA+CG +S A ++F+
Sbjct: 194 EATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFN 253

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M   +V+AW  +I+G  +HG+  EA +LF  M+   V PN++TFVA+LSAC+HAG+V E
Sbjct: 254 AMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDE 313

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G ++   M   YG+ P VEH+ C++DL  RAGLL EA + +  +  E P P+   A+LG 
Sbjct: 314 GQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPME-PNPSALGALLGG 372

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C++H NF+LG  V + L++++P + G Y++LSNIYA A + D    VRN+M   G+ K  
Sbjct: 373 CRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVP 432

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA-GYVPESESAMHELEEEER 505
           G S +E+    + F  GD SHP +N+IY  L+E+  R + A GY  ++ + + ++EEE++
Sbjct: 433 GVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEEEDK 492

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
           E++L  HSEKLA+A+GL+       IRIVKNLR+C DCH   K IS    REIIVRDR R
Sbjct: 493 EHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNR 552

Query: 566 FHHFKRG 572
           FHHF+ G
Sbjct: 553 FHHFEDG 559



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 162/321 (50%), Gaps = 29/321 (9%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T+  VIK+C   S+   G  VH HV  SG++ D ++  +L++ YA   ++  A+++F   
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
            D+ VV+WN+MI GY + G     +G   ++ D  V  D  +   ++   A +G ID  +
Sbjct: 62  SDRDVVSWNAMIDGYVKRG----EMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAK 117

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            + +    +  + N+V   S+++ + +CGNV +A  +F  M   +V++W +M++ Y   G
Sbjct: 118 RLFD----EMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCG 173

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGV 344
              EA+ LF +MRA GV+P   T V++LSACAH G + +G   H      R E   + G 
Sbjct: 174 KPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG- 232

Query: 345 EHHVCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
                +VD++ + G ++ A +       KDV+        W  ++    +H +     ++
Sbjct: 233 ---TALVDMYAKCGKISLATQVFNAMESKDVLA-------WNTIIAGMAIHGHVKEAQQL 282

Query: 400 AEHL--LSVEPENPGHYVMLS 418
            + +   SVEP +     MLS
Sbjct: 283 FKEMKEASVEPNDITFVAMLS 303


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/617 (34%), Positives = 344/617 (55%), Gaps = 42/617 (6%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAG-------YGRSRSMLTKLLSLV- 50
           + K+P +  Y  +++   + + L++   VH H+  +G       + R   M  K  SLV 
Sbjct: 79  RAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVD 138

Query: 51  -----------------------CDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFS 87
                                   + G +  A+++F  +   DS+ +  ++    K +  
Sbjct: 139 ARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQP 198

Query: 88  TDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
            ++L+ Y  M  V N  P+ +T S  + + A +  +  G+ +H H+  +G DSD  + ++
Sbjct: 199 EEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSS 258

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ Y K   +D AR +FD++ +K VV+W SMI  Y ++   +E   LF+ +      P+
Sbjct: 259 LMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPN 318

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T   VL ACA L   +LG+ VH ++   G D     ++SL++MY +CGN+  A+ + D
Sbjct: 319 EYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVD 378

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
              + ++++WT++I G   +G   EA++ F  +   G +P++VTFV VLSAC HAGLV++
Sbjct: 379 GCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEK 438

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE---KPAPAVWTAM 383
           G   F S+ +++ L    +H+ C+VDL  R+G   +    +K VI E   KP+  +W ++
Sbjct: 439 GLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQ----LKSVISEMPMKPSKFLWASV 494

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           LG C  + N DL  E A+ L  +EPENP  YV ++NIYA AG+ +    +R  M + G+ 
Sbjct: 495 LGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVT 554

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K  G S  E+ +K ++F   D SHP  N+I ++L EL  + +E GYVP +   +H++E+E
Sbjct: 555 KRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDE 614

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
           ++E +L YHSEKLA+AF ++ T  G  I++ KNLR CVDCH AIKFIS  T R+I VRD 
Sbjct: 615 QKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDS 674

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFH F+ G CSC DYW
Sbjct: 675 TRFHCFENGQCSCGDYW 691


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/523 (39%), Positives = 320/523 (61%), Gaps = 7/523 (1%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+R F C+P      +N ++   ++   + ++L  +  M+ + I P   T+  VI +C+ 
Sbjct: 213 ARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSS 272

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
                L  ++   +       +  V+ AL++ YAK  ++D ARK+F+ MP ++VV WNSM
Sbjct: 273 RGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSM 332

Query: 179 ISGYEQNGFAKEAIGLFN-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           I+GY QNG +  AI LF  ++    + PD  T V V++AC  LG ++LG WV  F+    
Sbjct: 333 IAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQ 392

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           + +++    ++I MY+RCG++  A+ +F  M+  +V+++  +ISG+  HG+G EA+ L  
Sbjct: 393 IKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMS 452

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
            M+  G+ P+ VTF+ VL+AC+HAGL++EG +VF S++      P ++H+ CMVDL GR 
Sbjct: 453 TMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRV 507

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           G L +A + ++ +  E P   V+ ++L A ++HK  +LG   A  L  +EP+N G++++L
Sbjct: 508 GELEDAKRTMERMPME-PHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILL 566

Query: 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL 477
           SNIYA AGR   VE +R  M + G+KK  G+S VE   K + F + D+SH  +++IYQ L
Sbjct: 567 SNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLL 626

Query: 478 DELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNL 537
            EL  + REAGY+ +    + ++EEEE+E  +  HSEKLA+ + L+ +  G  IR+VKNL
Sbjct: 627 IELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNL 686

Query: 538 RMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R+C DCH+AIK IS    R IIVRD  RFH F  G CSC DYW
Sbjct: 687 RVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 729



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 127/483 (26%), Positives = 216/483 (44%), Gaps = 100/483 (20%)

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           Y   +F    +P+ F+F +++   S        +L Y +M    + P  + +  +IKS  
Sbjct: 52  YTHLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG 111

Query: 118 ------HLSILNLG------------------------------------RAVHCHVFVS 135
                 H  +L LG                                    +    +  VS
Sbjct: 112 TGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVS 171

Query: 136 GY---DSDLHVQ--------------AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           GY   +S+   Q               A+V  YAK  +++ AR+ FD MP++SVV+WN+M
Sbjct: 172 GYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAM 231

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           +SGY QNG A+EA+ LF+ M + G+ PD TT V V++AC+  GD  L   +   +  + +
Sbjct: 232 LSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRI 291

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
            +N  + T+L++MYA+ G++  AR++F+ M   NV+ W +MI+GY  +G    A+ELF  
Sbjct: 292 QLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKE 351

Query: 299 M-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
           M  A  + P+ VT V+V+SAC H G ++ G+ V   +  E  +   +  H  M+ ++ R 
Sbjct: 352 MITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFL-TENQIKLSISGHNAMIFMYSRC 410

Query: 358 GLLNEAYKF-----VKDVI----------------------------GEKPAPAVWTAML 384
           G + +A +       +DV+                            G +P    +  +L
Sbjct: 411 GSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVL 470

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            AC      + G +V E   S++     HY  + +   L GR+  +E  +  M +  ++ 
Sbjct: 471 TACSHAGLLEEGRKVFE---SIKDPAIDHYACMVD---LLGRVGELEDAKRTMERMPMEP 524

Query: 445 HVG 447
           H G
Sbjct: 525 HAG 527



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+R+F  + + D   +NTLI   +      +++     M    I P   TF  V+
Sbjct: 411 GSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVL 470

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
            +C+H  +L  GR     VF S  D  +   A +V+   +   ++ A++  +RMP
Sbjct: 471 TACSHAGLLEEGRK----VFESIKDPAIDHYACMVDLLGRVGELEDAKRTMERMP 521


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/571 (33%), Positives = 334/571 (58%), Gaps = 29/571 (5%)

Query: 38   RSRSMLTKLLSLVCDAGFITYAQRIFFCIPS----PDSFLFNTLIIRNSKANFSTDSLLF 93
            R+ S    ++S     GF+  A  +F+ + S    PD   +N L+  +    +  + L  
Sbjct: 839  RNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNI 898

Query: 94   YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153
             +RM      P++ + ++V+++ + L  LN+G+  H +V  +G+D D++V  +L++ Y K
Sbjct: 899  LQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVK 958

Query: 154  SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD------- 206
            ++++  A+ VFD M ++++ AWNS++SGY   G  ++A+ L N M   G+ PD       
Sbjct: 959  NHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGM 1018

Query: 207  -----------------STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
                             S +  C+L ACA L  +  G+ +H   +  G   +V +AT+LI
Sbjct: 1019 ISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALI 1078

Query: 250  NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
            +MY++  ++  A ++F  +    + +W  MI G+ + G G EA+ +F+ M+  GV P+ +
Sbjct: 1079 DMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAI 1138

Query: 310  TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
            TF A+LSAC ++GL+ EG + F SM  +Y ++P +EH+ CMVDL GRAG L+EA+  +  
Sbjct: 1139 TFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIH- 1197

Query: 370  VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
             +  KP   +W A+LG+C++HKN       A++L  +EP N  +Y+++ N+Y++  R + 
Sbjct: 1198 TMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWED 1257

Query: 430  VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
            ++ +R +M   G++    +S ++++Q+ ++FS  +K HP+  +IY  L +L+   ++ GY
Sbjct: 1258 MDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGY 1317

Query: 490  VPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKF 549
            VP+       ++E E++  L  H+EKLA+ +GL++   G  IR++KN R+C DCHSA K+
Sbjct: 1318 VPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKY 1377

Query: 550  ISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            IS+   RE+ +RD +RFHHF+ G CSC D+W
Sbjct: 1378 ISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 131/253 (51%), Gaps = 1/253 (0%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           +S  +K+C  +  + LG  +H  +   G+D D++++ AL+NFY +   ++ A +VF  MP
Sbjct: 677 YSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMP 736

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           +   + WN  I    Q+   ++ + LF  M+   +  ++ T V VL AC ++G ++  + 
Sbjct: 737 NPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQ 796

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H ++   GLD +V L   LI+MY++ G +  AR +FD M   N  +W +MIS Y   G+
Sbjct: 797 IHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGF 856

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             +A  LF+ + +  ++P+ VT+  +LS     G  +E   +   M+ E G  P      
Sbjct: 857 LNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE-GFKPNSSSMT 915

Query: 349 CMVDLFGRAGLLN 361
            ++      G LN
Sbjct: 916 SVLQAISELGFLN 928



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 4/218 (1%)

Query: 170 KSVVAWNSMISGYEQN-GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           ++ + WNS +  ++ + G     + +F  +   GV  DS      L  C ++ DI LG  
Sbjct: 636 RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 695

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H  ++ +G D++V L  +L+N Y RC  + KA ++F  M     + W   I        
Sbjct: 696 IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 755

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             + VELF +M+   ++    T V VL AC   G +    ++   + + +GL   V    
Sbjct: 756 LQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFR-FGLDSDVSLCN 814

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
            ++ ++ + G L  A +    +  E    + W +M+ +
Sbjct: 815 PLISMYSKNGKLELARRVFDSM--ENRNTSSWNSMISS 850


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/586 (36%), Positives = 334/586 (56%), Gaps = 7/586 (1%)

Query: 1   MKNKQPHSPAYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           ++N  P+   +   L A   G R+K   Q H  L   G    + + + L+ +      + 
Sbjct: 110 LQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVE 169

Query: 58  YAQRIFFCIPSP---DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
            A ++   +P     D F +N+++    ++    +++   RRM+   ++  + T+  V+ 
Sbjct: 170 LALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMG 229

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
            CA +  L LG  VH  +   G   D  V + L++ Y K   V  AR VFD + +++VV 
Sbjct: 230 LCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVV 289

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           W ++++ Y QNG+ +E++ LF  M   G  P+  T   +L ACA +  +  G  +H  + 
Sbjct: 290 WTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVE 349

Query: 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVE 294
             G   +V++  +LINMY++ G++  +  +F  M   ++I W AMI GY  HG G +A++
Sbjct: 350 KLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQ 409

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
           +F  M +    PN VTF+ VLSA +H GLV+EG      + + + + PG+EH+ CMV L 
Sbjct: 410 VFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALL 469

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414
            RAGLL+EA  F+K     K     W  +L AC +H+N+DLG  +AE +L ++P + G Y
Sbjct: 470 SRAGLLDEAENFMK-TTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTY 528

Query: 415 VMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIY 474
            +LSN+YA A R D V  +R +M ++ +KK  G S +++    ++F     +HP + +IY
Sbjct: 529 TLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIY 588

Query: 475 QYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIV 534
           + + +L+   +  GYVP   S +H++E+E++E  L YHSEKLALA+GLM+      IRI+
Sbjct: 589 KKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIRII 648

Query: 535 KNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           KNLRMC DCH+A+K IS  TNR IIVRD  RFHHF+ GSC+CLD+W
Sbjct: 649 KNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 221/441 (50%), Gaps = 28/441 (6%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLV---CDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           + +HA  ++     + S ++ L SLV      G +  A+ +F  +P  +   +N L+   
Sbjct: 32  KAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGY 91

Query: 82  SKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
                  + L+ ++ M+ + N  P+ Y F+  + +C+H   +  G   H  +F  G    
Sbjct: 92  LHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCH 151

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDK---SVVAWNSMISGYEQNGFAKEAIGLFNL 197
            +V++ALV+ Y++ ++V++A +V D +P +    + ++NS+++   ++G  +EA+ +   
Sbjct: 152 QYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRR 211

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M D  V  D  T V V+  CAQ+ D+ LG  VH  ++  GL  +  + + LI+MY +CG 
Sbjct: 212 MVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGE 271

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           V  AR +FD +   NV+ WTA+++ Y  +GY  E++ LF  M   G  PN  TF  +L+A
Sbjct: 272 VLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNA 331

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGE 373
           CA    ++ G  + A + +      G ++HV     +++++ ++G ++ +Y    D+I  
Sbjct: 332 CAGIAALRHGDLLHARVEK-----LGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYR 386

Query: 374 KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE-- 431
                 W AM+     H      ++V + ++S E E P +YV    + +    +  V+  
Sbjct: 387 D--IITWNAMICGYSHHGLGKQALQVFQDMVSAE-ECP-NYVTFIGVLSAYSHLGLVKEG 442

Query: 432 ------VVRNIMIQKGLKKHV 446
                 ++RN  I+ GL+ + 
Sbjct: 443 FYYLNHLMRNFKIEPGLEHYT 463



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 150/296 (50%), Gaps = 10/296 (3%)

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD-LHVQ--AALVNFYAKS 154
           + S   PS      ++K CA +  L  G+A+H    +    S+  H+    +LV+ Y K 
Sbjct: 4   VFSRYLPSLEELGKLLKLCADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKC 63

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCV 213
             + +AR +FD MP ++VV+WN +++GY   G   E + LF N++      P+       
Sbjct: 64  GQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTA 123

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL-- 271
           L+AC+  G +  G   H  +   GL  +  + ++L++MY+RC +V  A ++ D +     
Sbjct: 124 LSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHV 183

Query: 272 -NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            ++ ++ ++++     G G EAVE+  RM    V  ++VT+V V+  CA    +Q G RV
Sbjct: 184 NDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRV 243

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
            A + +  GL+        ++D++G+ G +  A + V D +  +    VWTA++ A
Sbjct: 244 HARLLRG-GLMFDEFVGSMLIDMYGKCGEVLNA-RNVFDGLQNRNV-VVWTALMTA 296


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/561 (39%), Positives = 339/561 (60%), Gaps = 7/561 (1%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI-IRNSK 83
            QQVH   +  G     S+   L+ +  D G  + +  IF  +   D   +N+++ +  S 
Sbjct: 496  QQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSS 555

Query: 84   ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
               + +S+  +  M+ S ++P+  TF  ++ + + LS+L LG+ VH  V   G   D  V
Sbjct: 556  HAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAV 615

Query: 144  QAALVNFYAKSNNVDVARKVFDRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
              AL++ YAKS ++D   ++F  M  +   V+WNSMISGY  NG  +E +    LM    
Sbjct: 616  DNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSN 675

Query: 203  VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
               D  T   VL ACA +  ++ G  +H F +   L+ +VV+ ++L++MY++CG +  A 
Sbjct: 676  QMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYAS 735

Query: 263  EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
            ++F+ MS+ N  +W +MISGY  HG G +A+E+F  M+ +G  P++VTFV+VLSAC+HAG
Sbjct: 736  KVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAG 795

Query: 323  LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
            LV  G   F  M +++G+LP +EH+ C++DL GRAG L +  +++ + +  KP   +W  
Sbjct: 796  LVDRGLDYF-EMMEDHGILPHIEHYSCVIDLLGRAGKLLKIQEYI-NRMPMKPNTLIWRT 853

Query: 383  MLGACKMHKN---FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
            +L AC+  K+    DLG E +  LL +EP+NP +YV+ SN YA  GR +     R  M  
Sbjct: 854  VLVACRQSKDGDRIDLGKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGG 913

Query: 440  KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
              +KK  G S V +    + F  GD+SHPNT EIY+ L+ L+ + + AGYVP +E A+++
Sbjct: 914  AAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIKNAGYVPMTEFALYD 973

Query: 500  LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
            LEEE +E  L YHSEKLA+AF L R+S  + IRI+KNLR+C DCH+A ++IS    R+II
Sbjct: 974  LEEENKEELLSYHSEKLAVAFVLTRSSSDVPIRIMKNLRVCGDCHTAFRYISQIVCRQII 1033

Query: 560  VRDRLRFHHFKRGSCSCLDYW 580
            +RD +RFHHF+ G CSC DYW
Sbjct: 1034 LRDSIRFHHFEDGKCSCGDYW 1054



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 190/370 (51%), Gaps = 15/370 (4%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           L QV A ++ +G      + + L+S     G +  A+ IF  +   ++   N LI+   K
Sbjct: 289 LDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVK 348

Query: 84  ANFSTDSLLFY---RRMIVSNISPSNYTFSAVIKSCAHLSI----LNLGRAVHCHVFVSG 136
            + S +++  +   R   V N      TF  ++ + A  SI    L  GR VH H+  +G
Sbjct: 349 QHCSEEAVGIFMGTRDSFVVNTD----TFVVLLSAVAEFSIPEDGLMRGREVHGHILRTG 404

Query: 137 Y-DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
             D  + +   LVN YAK   +D A +VF  +  +  V+WN++IS  +QNGF + A+  +
Sbjct: 405 LIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNY 464

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
            +MR   ++P +   +  L++CA L  +  G+ VH   V  GLD++  ++ +L+ MY  C
Sbjct: 465 CMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDC 524

Query: 256 GNVSKAREIFDMMSELNVIAWTAMIS-GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           G  S++ EIF+ M+E ++++W +++      H    E+VE+F  M   G+ PN VTFV +
Sbjct: 525 GARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNL 584

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           LSA +   +++ G +V A + + +G +        ++  + ++G ++   +    + G +
Sbjct: 585 LSALSPLSVLELGKQVHAVVLK-HGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRR 643

Query: 375 PAPAVWTAML 384
            A + W +M+
Sbjct: 644 DAVS-WNSMI 652



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 127/282 (45%), Gaps = 28/282 (9%)

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
           +H  +   G   DL +   LVN YAK + +  AR+VFD M +++ V+W  ++SGY  +G 
Sbjct: 78  LHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGI 137

Query: 188 AKEAIGLFNLMRDFGVN---PDSTTCVCVLAACAQLGD--IDLGRWVHEFIVGQGLDVNV 242
             EA  +F  M   G     P   T   VL AC   G   +     VH  +       N 
Sbjct: 138 TDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNT 197

Query: 243 VLATSLINMYARC--GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF---- 296
            +  +LI+MY  C  G   +A+++FD     ++I W A++S Y   GY      LF    
Sbjct: 198 TVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAML 257

Query: 297 HRMRAHGVRPNNVTFVAV-----LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           H   A  +RPN  TF ++     LS+C+   L Q   RV  S     G    +     +V
Sbjct: 258 HDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKS-----GSSSDLYVGSALV 312

Query: 352 DLFGRAGLLNEAYKFVKDV---IGEKPAPAVWTAMLGACKMH 390
             F R G+L+EA    KD+   + E+ A  +   ++G  K H
Sbjct: 313 SAFARHGMLDEA----KDIFINLKERNAVTLNGLIVGLVKQH 350



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 145/322 (45%), Gaps = 27/322 (8%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H  L+  G      +   L++L      +  A+++F  +   ++  +  L+     +
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 85  NFSTDSLLFYRRMIVSNIS---PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG--YDS 139
             + ++   ++ M+        P+ +TF +V+++C       L  AV  H  VS   Y S
Sbjct: 136 GITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYAS 195

Query: 140 DLHVQAALVNFYAKSNNVDV-----ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
           +  V  AL++ Y    N  V     A++VFD  P + ++ WN+++S Y + G+      L
Sbjct: 196 NTTVCNALISMYG---NCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTL 252

Query: 195 FNLM----RDFGVNPDSTT-----CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           F  M        + P+  T         L++C+  G +D    V   ++  G   ++ + 
Sbjct: 253 FMAMLHDDSAIELRPNEHTFGSLITATSLSSCSS-GVLD---QVFARVLKSGSSSDLYVG 308

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           ++L++ +AR G + +A++IF  + E N +    +I G        EAV +F   R   V 
Sbjct: 309 SALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFV- 367

Query: 306 PNNVTFVAVLSACAHAGLVQEG 327
            N  TFV +LSA A   + ++G
Sbjct: 368 VNTDTFVVLLSAVAEFSIPEDG 389


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/477 (38%), Positives = 305/477 (63%), Gaps = 2/477 (0%)

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P+ +TF++++K+    +   +G  +H       +  D++V +AL++ YA+   +D+A  V
Sbjct: 39  PNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAV 98

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           FD++  K+ V+WN++I+G+ + G  +  + +F  M+  G      T   V +A A +G +
Sbjct: 99  FDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGAL 158

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
           + G+WVH  ++  G  ++  +  ++++MYA+ G++  AR++FD + + +++ W +M++ +
Sbjct: 159 EQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAF 218

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
             +G G EAV  F  MR  GV  N +TF+++L+AC+H GLV+EG + F  M +E+ L P 
Sbjct: 219 AQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF-DMMKEHNLEPE 277

Query: 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
           ++H+V +VDL GRAGLLN+A  F+   +  KP  AVW A+LG+C+MHKN  +G   A+H+
Sbjct: 278 IDHYVTVVDLLGRAGLLNDALVFIFK-MPMKPTAAVWGALLGSCRMHKNAKIGQFAADHV 336

Query: 404 LSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMG 463
             ++P++ G  V+L NIYA  G+ D    VR +M   G+KK    S VE++   ++F   
Sbjct: 337 FELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVAN 396

Query: 464 DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLM 523
           D +HP + EIY+  +E+  + R+AGYVP ++  +  ++E+ER+  L+YHSEK+ALAF L+
Sbjct: 397 DDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALI 456

Query: 524 RTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
               G TIRI+KN+R+C DCHSA ++IS    REI+VRD  RFHHF  GSCSC DYW
Sbjct: 457 NMPLGATIRIMKNIRICGDCHSAFRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 137/286 (47%), Gaps = 4/286 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   + ++LKA          +Q+HA  +   +     + + LL +    G +  A  
Sbjct: 38  KPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIA 97

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  + S +   +N LI   ++      +LL +  M  +    +++T+S+V  + A +  
Sbjct: 98  VFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGA 157

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ VH H+  SG      V   +++ YAKS ++  ARKVFD +  K +V WNSM++ 
Sbjct: 158 LEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTA 217

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + Q G  +EA+  F  MR  GV+ +  T + +L AC+  G +  G+   + +    L+  
Sbjct: 218 FAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPE 277

Query: 242 VVLATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMH 286
           +    +++++  R G ++ A   IF M  +     W A++    MH
Sbjct: 278 IDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMH 323



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 6/237 (2%)

Query: 167 MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
           M  + + +W S+I+GY QN    EA+GL   M      P+  T   +L A        +G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
             +H   V      +V + ++L++MYARCG +  A  +FD +   N ++W A+I+G+   
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
           G G   + +F  M+ +G    + T+ +V SA A  G +++G  V A M +    L     
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 180

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403
           +  ++D++ ++G + +A K    V  +K     W +ML A      + LG E   H 
Sbjct: 181 NT-ILDMYAKSGSMIDARKVFDHV--DKKDLVTWNSMLTA---FAQYGLGREAVTHF 231


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 327/578 (56%), Gaps = 7/578 (1%)

Query: 6   PHSPAYEAILKA---GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   + AIL A      L   QQ+HA +    +     + T LL +    G +  A+ +
Sbjct: 198 PNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENV 257

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P  +   +N++I+   K      ++  +R ++  ++ P   + S+V+ +CA L  L
Sbjct: 258 FDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVL--SLGPDQVSISSVLSACAGLVEL 315

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           + G+ VH  +   G    ++V+ +LV+ Y K    + A K+F    D+ VV WN MI G 
Sbjct: 316 DFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGC 375

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            +    ++A   F  M   GV PD  +   +  A A +  +  G  +H  ++  G   N 
Sbjct: 376 FRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNS 435

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            +++SL+ MY +CG++  A ++F    E NV+ WTAMI+ +  HG   EA++LF  M   
Sbjct: 436 RISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNE 495

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV P  +TFV+VLSAC+H G + +G + F SM   + + PG+EH+ CMVDL GR G L E
Sbjct: 496 GVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEE 555

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
           A +F++ +  E P   VW A+LGAC  H N ++G EVAE L  +EP+NPG+Y++LSNIY 
Sbjct: 556 ACRFIESMPFE-PDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYI 614

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
             G ++  + VR +M   G++K  G S ++V  + ++F+  D+SH  T EIY  L +L  
Sbjct: 615 RHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKE 674

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
             +  GYV E++ A + +E  E E SL  HSEKLALAFGL+   PG  +RI KNLR C D
Sbjct: 675 LIKRRGYVAETQFATNSVEGSE-EQSLWCHSEKLALAFGLLVLPPGSPVRIKKNLRTCGD 733

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH+ +KF S    REIIVRD  RFH F  GSCSC+DYW
Sbjct: 734 CHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 133/460 (28%), Positives = 227/460 (49%), Gaps = 41/460 (8%)

Query: 9   PAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
           P  + +L    +LK L+   Q+H+ L+      S + +  LL L    G I +   +F  
Sbjct: 98  PDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNT 157

Query: 66  IPSPDS--FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123
            P P +    + TLI + S++N    +L F+ RM  + I P+++TFSA++ +CAH ++L+
Sbjct: 158 YPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLS 217

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
            G+ +H  +    + +D  V  AL++ YAK  ++ +A  VFD MP +++V+WNSMI G+ 
Sbjct: 218 EGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFV 277

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           +N     AIG+F  +   G  PD  +   VL+ACA L ++D G+ VH  IV +GL   V 
Sbjct: 278 KNKLYGRAIGVFREVLSLG--PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVY 335

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           +  SL++MY +CG    A ++F    + +V+ W  MI G        +A   F  M   G
Sbjct: 336 VKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREG 395

Query: 304 VRPNNVTFVAVLSACA-----------HAGLVQEGH----RVFASMRQEYGLLPGV---- 344
           V P+  ++ ++  A A           H+ +++ GH    R+ +S+   YG    +    
Sbjct: 396 VEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAY 455

Query: 345 -------EHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPA--VWTAMLGACKMHK 391
                  EH+V     M+ +F + G  NEA K  ++++ E   P    + ++L AC    
Sbjct: 456 QVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTG 515

Query: 392 NFDLGVEVAEHLLSVEPENPG--HYVMLSNIYALAGRMDR 429
             D G +    + +V    PG  HY  + ++    GR++ 
Sbjct: 516 KIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEE 555


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/541 (37%), Positives = 320/541 (59%), Gaps = 16/541 (2%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVS 100
           T ++  +C  G ++ A+ IF  +P  +   + ++I     N+K + +       R++   
Sbjct: 175 TNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVA-------RKLFEV 227

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
               +  T++A++K       +N        +F +     +     ++  +  +  V  A
Sbjct: 228 MPDKNEVTWTAMLKGYTRSGRINEA----AELFKAMPVKPVAACNGMIMGFGLNGEVGKA 283

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
           R VFD+M +K    W+++I  YE+ GF  EA+ LF+LM+  GV P+  + + +L+ C  L
Sbjct: 284 RWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSL 343

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             +D GR VH  +V    D+++ +++ LI MY +CG++   + +FD  S  +++ W ++I
Sbjct: 344 ASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSII 403

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           +GY  HG+G +A+E+FH M + G  P+ +TF+ VLSAC + G V+EG  +F SM+ +Y +
Sbjct: 404 AGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQV 463

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400
               EH+ CMVDL GRAG LNEA   ++++  E  A  VW A+L AC+ HKN DL    A
Sbjct: 464 DQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADA-IVWGALLSACRTHKNLDLAEIAA 522

Query: 401 EHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLF 460
           + LL +EP + G Y++LSN+YA   R   V  +R  M  + + K  G S +EVD K ++F
Sbjct: 523 KKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMF 582

Query: 461 S-MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALA 519
           +  G  SHP    I + L++L    REAGY P+    MH+++EE++ +SLR+HSEK+A+A
Sbjct: 583 TGGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVA 642

Query: 520 FGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
           +GL++   G  IR++KNLR+C DCHSAIK I+  T REII+RD  RFHHFK G CSC D+
Sbjct: 643 YGLLKVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDF 702

Query: 580 W 580
           W
Sbjct: 703 W 703



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 148/299 (49%), Gaps = 31/299 (10%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
            LV+ Y K+  +  ARKVFD+MP+++VV+W SM+ GY Q G   EA  LF  M +  V  
Sbjct: 83  GLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNV-- 140

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
              +   +L    + G +D  R + + I  +    +VV +T++I      G +S+AREIF
Sbjct: 141 --VSWTVMLGGLIEDGRVDEARRLFDMIPVK----DVVASTNMIGGLCSEGRLSEAREIF 194

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D M + NV+AWT+MISGY M+     A +LF  M       N VT+ A+L     +G + 
Sbjct: 195 DEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK----NEVTWTAMLKGYTRSGRIN 250

Query: 326 EGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           E   +F +M       P      C  M+  FG  G + +A ++V D + EK     W+A+
Sbjct: 251 EAAELFKAM-------PVKPVAACNGMIMGFGLNGEVGKA-RWVFDQMKEKD-DGTWSAL 301

Query: 384 LGACKMHKNFDLGVEVAEHLLS---VEPENPGHYVMLSNIYALA----GRMDRVEVVRN 435
           +   +  K F+L       L+    V P  P    +LS   +LA    GR    ++VR+
Sbjct: 302 IKIYE-RKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRS 359



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 133/302 (44%), Gaps = 65/302 (21%)

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI 192
           + S + S   +    ++++A+   +D AR +FD +  K+V +WN++++GY  N    EA 
Sbjct: 8   YRSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQ 67

Query: 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252
            LF+ M      P+                                  N +    L++ Y
Sbjct: 68  KLFDKM------PER---------------------------------NTISWNGLVSGY 88

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
            + G +S+AR++FD M E NV++WT+M+ GY   G   EA  LF RM    V    V++ 
Sbjct: 89  VKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNV----VSWT 144

Query: 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG---RAGLLNEAYKFVKD 369
            +L      G V E  R+F        ++P V+  V   ++ G     G L+EA    ++
Sbjct: 145 VMLGGLIEDGRVDEARRLF-------DMIP-VKDVVASTNMIGGLCSEGRLSEA----RE 192

Query: 370 VIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGR 426
           +  E P   V  WT+M+    M+      V+VA  L  V P+ N   +  +   Y  +GR
Sbjct: 193 IFDEMPQRNVVAWTSMISGYAMNNK----VDVARKLFEVMPDKNEVTWTAMLKGYTRSGR 248

Query: 427 MD 428
           ++
Sbjct: 249 IN 250



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 83/182 (45%), Gaps = 7/182 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+ P+  +IL     L  L   +QVH+ L+ + +     + + L+++    G +   +R
Sbjct: 327 RPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKR 386

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F    S D  ++N++I   ++  F   +L  +  M  S  +P   TF  V+ +C +   
Sbjct: 387 VFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGK 446

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQ--AALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSM 178
           +  G  +      S Y  D   +  A +V+   ++  ++ A  + + MP +   + W ++
Sbjct: 447 VKEGLEIF-ESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGAL 505

Query: 179 IS 180
           +S
Sbjct: 506 LS 507


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/597 (36%), Positives = 333/597 (55%), Gaps = 38/597 (6%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAG--FITYAQRIFFCIPSPDSFLFNTLI 78
           L  ++Q+H H++  G  +S  +LTKL+  +   G     YA+R+   +   + FL+  +I
Sbjct: 62  LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVI 121

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
              +      +++  Y  M    I+P ++TFSA++K+C  +  LNLGR  H   F     
Sbjct: 122 RGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGF 181

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV-------------------------- 172
             ++V   +++ Y K  ++D ARKVFD MP++ V                          
Sbjct: 182 CFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESL 241

Query: 173 -----VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
                VAW +M++G+ QN   +EA+  F+ M   G+  D  T    ++ACAQLG      
Sbjct: 242 PTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYAD 301

Query: 228 WVHEFIVGQGLDVN--VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
              +     G   +  VV+ ++LI+MY++CGNV +A  +F  M+  NV  +++MI G   
Sbjct: 302 RAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLAT 361

Query: 286 HGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
           HG   EA+ LFH M     ++PN VTFV  L AC+H+GLV +G +VF SM Q +G+ P  
Sbjct: 362 HGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTR 421

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           +H+ CMVDL GR G L EA + +K  +  +P   VW A+LGAC++H N ++    AEHL 
Sbjct: 422 DHYTCMVDLLGRTGRLQEALELIK-TMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLF 480

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS-TVEVDQKNYLFSMG 463
            +EP+  G+Y++LSN+YA AG    V  VR ++ +KGLKK    S  V+ + + + F  G
Sbjct: 481 ELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPG 540

Query: 464 DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLM 523
           + +HP +N+I   L+EL+ R    GY P+  S  +++ +  +   L  H+EKLALAF L+
Sbjct: 541 NLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLL 600

Query: 524 RTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            T+   TI I+KNLRMC+DCH  ++  S  T + II+RD +RFHHF+ G CSC D+W
Sbjct: 601 TTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/582 (37%), Positives = 341/582 (58%), Gaps = 19/582 (3%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P S     +LK   RL  LQ   Q+H  ++  G+G  + +L+ L+S+    G I   +++
Sbjct: 112 PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKV 171

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   D   +N+LI   ++      +L  +  M   +    +++++ +I   +    L
Sbjct: 172 FDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKD----SFSWTILIDGLSKSGKL 227

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
              R V   + +    S      A++N Y K+ + + A+++FD+MP++S+V WNSMI+GY
Sbjct: 228 EAARDVFDRMPIRNSVS----WNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGY 283

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
           E+N    +A+ LF +M    ++P+ TT +  ++A + +  +  GRWVH +IV  G   + 
Sbjct: 284 ERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDG 343

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           VL T LI MY++CG+V  A  +F  + +  +  WT++I G GMHG   + +ELF  M   
Sbjct: 344 VLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRT 403

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           G++P+ +TF+ VL+AC+HAG  ++ HR F  M  +YG+ P +EH+ C++D+  RAG L E
Sbjct: 404 GLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEE 463

Query: 363 AYKFVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
           A    KD I   P  A   +WT++L   + H N  +G   A+HL+ + P+  G YV+LSN
Sbjct: 464 A----KDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSN 519

Query: 420 IYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479
           +YA AG  ++V  VR +M +KG+KK  G S++E     + F +GDKSHP T EIY  L E
Sbjct: 520 MYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCE 579

Query: 480 LMGRCREAGYVPESESAMHELEEE-EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           +  +   AG++P++   +  LEE+ E+E  L  HSE+LA+AFGL+    G  IRI+KNLR
Sbjct: 580 MKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLR 639

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+  K +S   NREII+RD  RFHHFK GSCSC D+W
Sbjct: 640 ICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 195/383 (50%), Gaps = 20/383 (5%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQRIFFCIPSPDSFLFNTLI---IR 80
           Q+HA  I        S+ ++LL+L  D     + YA  +F  I  P    +N LI   I 
Sbjct: 33  QLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIE 92

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
           N ++N   D++  + +++  +  P ++T   V+K CA L  L  G+ +H  V   G+  D
Sbjct: 93  NQRSN---DAIALFCKLLC-DFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVD 148

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
             V ++LV+ Y+K   +++ RKVFDRM DK VV+WNS+I GY + G  + A+ +F  M +
Sbjct: 149 KFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPE 208

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
                DS +   ++   ++ G ++  R V + +  +    N V   ++IN Y + G+ + 
Sbjct: 209 ----KDSFSWTILIDGLSKSGKLEAARDVFDRMPIR----NSVSWNAMINGYMKAGDSNT 260

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A+E+FD M E +++ W +MI+GY  +   T+A++LF  M    + PN  T +  +SA + 
Sbjct: 261 AKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASG 320

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
              +  G  V + + +      GV   + +++++ + G +  A +  + +  +K     W
Sbjct: 321 MVSLGTGRWVHSYIVKSGFKTDGVLGTL-LIEMYSKCGSVKSALRVFRSIPKKKLGH--W 377

Query: 381 TAMLGACKMHKNFDLGVEVAEHL 403
           T+++    MH   +  +E+ + +
Sbjct: 378 TSVIVGLGMHGLVEQTLELFDEM 400


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/583 (36%), Positives = 336/583 (57%), Gaps = 16/583 (2%)

Query: 7   HSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF 63
           H      ILK   + K L Q    HA +++ G          L+++    G + +A+++F
Sbjct: 63  HVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVF 122

Query: 64  FCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
             +PS     +NT+I    +N + N + D LL  +R        S +T S+V+ +CA   
Sbjct: 123 DEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQR---EGTPFSEFTISSVLCACAAKC 179

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L+  + +H     +  D ++ V  AL++ YAK   +  A  VF+ MPD+SVV W+SM +
Sbjct: 180 ALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAA 239

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY QN   ++A+ LF    + G+  D      V+ ACA L  +  G+ ++  +   G   
Sbjct: 240 GYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCS 299

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           N+ +A+SLI+MYA+CG + ++ ++F  + + NV+ W AMISG   H    E + LF +M+
Sbjct: 300 NIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQ 359

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G+ PN+VTFV+VLSAC H GLV++G + F  M +E+ L P V H+ CMVD   RAG +
Sbjct: 360 QMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQI 419

Query: 361 NEAYKFVKDVIGEKP---APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
            EAY    D+I + P   + ++W ++L +C+ H N +L    A+ L  +EP N G+Y++L
Sbjct: 420 FEAY----DLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLL 475

Query: 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL 477
           SN+YA  G+ D V  +R ++ +  +KK  G S +E+  K +LF +G+++HP   EIY  L
Sbjct: 476 SNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKL 535

Query: 478 DELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNL 537
           +E+M   ++ GY  E++  +H++ E  ++  LR+HSEKLA   GL+   P   IRI+KNL
Sbjct: 536 NEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNL 595

Query: 538 RMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R+C DCHS +K  S    R++IVRD  RFHHFK G CSC D+W
Sbjct: 596 RICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/553 (39%), Positives = 316/553 (57%), Gaps = 30/553 (5%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFS 110
           G +  AQ +F  IP PD+  +NT++   +RNS    +     F+  M + +    N   +
Sbjct: 21  GKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQ---AFFEDMPIKDTPSWNTMIT 77

Query: 111 AVI------KSCAHLSILNLGRAVHCHVFVSGY------DSDLHV-----------QAAL 147
                    K+     I+     V  +  +SGY      DS L +             A+
Sbjct: 78  GFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAM 137

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
           +  Y K   + +A ++F++MP+K++V WN+MI+GY +N  A++ + LF  M  FG+ P+S
Sbjct: 138 ITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNS 197

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
           +T    L  C++L  + LGR VH+ +    L  +    TSLI+MY +CG +    ++F  
Sbjct: 198 STLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQ 257

Query: 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG 327
           +   +V+ W AMISGY  HG G +A+ LF  M   G++P+ +TFVAVL AC HAG    G
Sbjct: 258 VPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLG 317

Query: 328 HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
            + F SM ++YGL+   +H+ CMVDL GRAG L EA   ++  +  KP  AV+  +LGAC
Sbjct: 318 VKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEK-MPFKPHAAVFGTLLGAC 376

Query: 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVG 447
           ++HKN ++    ++ LL+++P +   YV L+N+YA   R D V  VR  M    + K  G
Sbjct: 377 RIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPG 436

Query: 448 YSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREY 507
           YS +EV    + F  GDK HP    I+  L EL  + + AGYVP+ E A+H++ EE++E 
Sbjct: 437 YSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVPDLEFALHDVGEEQKEQ 496

Query: 508 SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFH 567
            L +HSEKLA+A+GL++  PG  IR+ KNLR+C DCH AIK+IS    REIIVRD  RFH
Sbjct: 497 LLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRFH 556

Query: 568 HFKRGSCSCLDYW 580
           HFK G CSC DYW
Sbjct: 557 HFKDGHCSCADYW 569



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 5/229 (2%)

Query: 41  SMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS 100
           +M+T  + L    G I  A+R+F  +P  +   +N +I    + + + D +  +R M+  
Sbjct: 136 AMITGYMKL----GRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGF 191

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
            I P++ T S+ +  C+ LS L LGR VH  V  S    D     +L++ Y K   ++  
Sbjct: 192 GIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDG 251

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
            K+F ++P + VV WN+MISGY Q+G  K+A+GLF+ M + G+ PD  T V VL AC   
Sbjct: 252 WKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHA 311

Query: 221 GDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           G  DLG ++ H      GL       T ++++  R G + +A ++ + M
Sbjct: 312 GFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKM 360



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 140/364 (38%), Gaps = 107/364 (29%)

Query: 167 MPDKSVVAWNSMISGY-EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA---------- 215
           M  K+ V WNS+++G  ++ G  KEA  LF  + +    PD+ +   +L+          
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPE----PDAVSYNTMLSCYVRNSNMER 56

Query: 216 ACAQLGDI---DLGRW---VHEFIVGQGLD-----------VNVVLATSLINMYARCGNV 258
           A A   D+   D   W   +  F   Q +D            NVV   ++I+ Y  CG++
Sbjct: 57  AQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDL 116

Query: 259 SK-------------------------------AREIFDMMSELNVIAWTAMISGYGMHG 287
                                            A  +F+ M E N++ W AMI+GY  + 
Sbjct: 117 DSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENH 176

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
              + V+LF  M   G++PN+ T  + L  C+    +Q G +V   +  +  L       
Sbjct: 177 RAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVH-QLVCKSPLCDDTTAG 235

Query: 348 VCMVDLFGRAGLLNEAYKFV-----KDVI----------------------------GEK 374
             ++ ++ + G+L + +K       +DV+                            G K
Sbjct: 236 TSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMK 295

Query: 375 PAPAVWTAMLGACKMHKNFDLGVE-----VAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
           P    + A+L AC      DLGV+       ++ L  +P+   HY  + ++   AG++  
Sbjct: 296 PDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPD---HYTCMVDLLGRAGKL-- 350

Query: 430 VEVV 433
           VE V
Sbjct: 351 VEAV 354


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/565 (35%), Positives = 327/565 (57%), Gaps = 9/565 (1%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP--DSFLFNTLIIRN 81
           ++Q+H+    +G+    S+   LL+     G +  A+ +F  +     D   +N++I+  
Sbjct: 157 IRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAY 216

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
            +      +L  YR M+        +T ++V+ + + +  L+ G   H     +G++ + 
Sbjct: 217 GQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNR 276

Query: 142 HVQAALVNFYAKSN-NVDVARKVFDRMPDKSVVAWNSMISGYEQNG-FAKEAIGLFNLMR 199
           HV + L++ YAK    +  +RKVF+ +    +V WN+MISGY QN   + EA+  F  M+
Sbjct: 277 HVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQ 336

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN-VVLATSLINMYARCGNV 258
             G  PD  + VC ++AC+ L     G+  H   +   +  N + +  +L+ MY++CGN+
Sbjct: 337 RAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNL 396

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
             AR++F  M + N +   ++I+GY  HG GTE++ LF +M A  + P ++T V++LSAC
Sbjct: 397 QDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSAC 456

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
           AH G V+EG + F  M+  +G+ P  EH+ CM+DL GRAG L+EA + + D +   P  A
Sbjct: 457 AHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLI-DTMPFSPGSA 515

Query: 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438
            W A+LGAC+ + N +L  + A   L +EP N   Y+ML+++Y+ A + +    +R +M 
Sbjct: 516 AWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMR 575

Query: 439 QKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM- 497
            +G++K  G S +E++++ ++F   D SHP   EI+ YLDE+  + + AGYVP+   A  
Sbjct: 576 DRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRWAFV 635

Query: 498 --HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
              E  E+E+E  L +HSEKLA+AFGL+ T  G  + +VKNLR+C DCH+AIKF+S    
Sbjct: 636 KDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFMSAIAR 695

Query: 556 REIIVRDRLRFHHFKRGSCSCLDYW 580
           R+I VRD  RFH F+ G CSC DYW
Sbjct: 696 RKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 202/436 (46%), Gaps = 51/436 (11%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           L++       I  A  +F  IP PD   FNTLI   +    +  +L  +  M    +   
Sbjct: 80  LIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMD 139

Query: 106 NYTFSAVIKSCA-HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
            +TFS VI +C  H+ ++   R +H   F SG+DS + V+ +L+ +Y+K+  ++ A  VF
Sbjct: 140 GFTFSGVITACCNHVGLI---RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVF 196

Query: 165 DRMPD--KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           + M +  +  V+WNSMI  Y Q+    +A+ L+  M   G   D  T   VL   + + D
Sbjct: 197 NGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVED 256

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG-NVSKAREIFDMMSELNVIAWTAMIS 281
           +  G   H   +  G + N  + + LI+MYA+CG  +S++R++F+ +   +++ W  MIS
Sbjct: 257 LSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMIS 316

Query: 282 GYGMHG-YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYG 339
           GY  +     EA+E F +M+  G  P++ +FV  +SAC++     +G +  A +M+ E  
Sbjct: 317 GYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSE-- 374

Query: 340 LLPGVEHHV--CMVDLFGRAGLLNEAYKFVKDV-------------------IGEK---- 374
            +P  +  V   +V ++ + G L +A K  + +                   IG +    
Sbjct: 375 -IPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNL 433

Query: 375 ----------PAPAVWTAMLGACKMHKNFDLG---VEVAEHLLSVEPENPGHYVMLSNIY 421
                     P      ++L AC      + G     + + +  +EPE   HY  + ++ 
Sbjct: 434 FEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAE-HYSCMIDLL 492

Query: 422 ALAGRMDRVEVVRNIM 437
             AG++   E + + M
Sbjct: 493 GRAGKLSEAERLIDTM 508



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 147/313 (46%), Gaps = 18/313 (5%)

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
           ++ + +I S+   SN+ F  +   C      NL    H H F   ++ ++    AL+  Y
Sbjct: 33  IYLKSLIPSSTYLSNH-FILLYSKC------NLLTTAH-HAFNQTHEPNVFSFNALIAAY 84

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
           AK + + VA  +FD++P   +V++N++I+ Y   G    A+ LF  MR+ G+  D  T  
Sbjct: 85  AKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFS 144

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE- 270
            V+ AC     + L R +H      G D  V +  SL+  Y++ G + +A  +F+ M E 
Sbjct: 145 GVITACCN--HVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEE 202

Query: 271 -LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             + ++W +MI  YG H  G +A+ L+  M   G   +  T  +VL+  +    +  G +
Sbjct: 203 VRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQ 262

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGL-LNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
            F +   + G          ++D++ + G  ++E+ K  +++ G      VW  M+    
Sbjct: 263 -FHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSD--LVVWNTMISG-- 317

Query: 389 MHKNFDLGVEVAE 401
             +N +L VE  E
Sbjct: 318 YSQNKELSVEALE 330


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 326/557 (58%), Gaps = 3/557 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           ++VHA+ I         +   L+ +     +I Y+  +F  +   D   + T+I   +++
Sbjct: 386 KEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQS 445

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           +   ++L  +R      I        +++++C+ L  + L + +HC+   +G   DL V+
Sbjct: 446 SRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LDLVVK 504

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             +++ Y +   V  + K+F+ +  K +V W SMI+ Y  +G   EA+ LF  M+   V 
Sbjct: 505 NRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQ 564

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PDS   V +L A   L  +  G+ VH F++ +   +   + +SL++MY+ CG++S A ++
Sbjct: 565 PDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKV 624

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ +   +++ WTAMI+  GMHG+G +A++LF RM   GV P++V+F+A+L AC+H+ LV
Sbjct: 625 FNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLV 684

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            EG      M   Y L P  EH+ C+VDL GR+G   EAY+F+K  +  KP   VW ++L
Sbjct: 685 NEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKS-MPLKPKSVVWCSLL 743

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GAC++HKN +L V  A  LL +EP+NPG+YV++SN++A  G+ +  + VR  + ++GL+K
Sbjct: 744 GACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRK 803

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR-EAGYVPESESAMHELEEE 503
               S +E+    + F+  D SH +   I   L E+  R R E GY  ++ S +H++ EE
Sbjct: 804 DPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEE 863

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
           E+   L  HSE+LA++FGL+ T PGM +RI KNLR+C DCH   K +S   +R+I+VRD 
Sbjct: 864 EKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDA 923

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFHHF  GSCSC D+W
Sbjct: 924 NRFHHFSGGSCSCGDFW 940



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 177/363 (48%), Gaps = 12/363 (3%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI-PSPDSFLFNTLIIRNSKA 84
           +VH   +  G  RS  +   L+++    G +  A R+F  +    D   +N++I    + 
Sbjct: 185 EVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQN 244

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
                +L  +R M  + +S ++YT   V++ C  L+ LNLGR +H  +  SG + ++   
Sbjct: 245 GMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCN 304

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           A LV  Y K   VD A +VF  + +K  ++WNSM+S Y QNG   EAI   + M   G  
Sbjct: 305 ALLV-MYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQ 363

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD    V + +A   LG +  G+ VH + + Q LD +  +  +L++MY +C  +  +  +
Sbjct: 364 PDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHV 423

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FD M   + I+WT +I+ Y       EA+E+F   +  G++ + +   ++L AC+    +
Sbjct: 424 FDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETI 483

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVC---MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
                + A     Y +  G+   V    ++D++G  G +  + K  + V  E+     WT
Sbjct: 484 -----LLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETV--EQKDIVTWT 536

Query: 382 AML 384
           +M+
Sbjct: 537 SMI 539



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 173/373 (46%), Gaps = 33/373 (8%)

Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY--DSDLHVQAALVNFYAKSNNVDVA 160
           SP    +  V+   A    +  G  VH H   +G     D  +   L+  Y K   V  A
Sbjct: 55  SPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADA 114

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR---DFGVNPDSTTCVCVLAAC 217
           R +FD M  ++V +WN++I  Y  +G A EA+G++  MR     GV PD  T   VL A 
Sbjct: 115 RLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKAS 174

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-LNVIAW 276
              GD   G  VH   V  GLD +  +A +LI MYA+CG +  A  +F++M +  +V +W
Sbjct: 175 GVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASW 234

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
            +MISG   +G   +A++LF  M+   +  N+ T V VL  C     +  G  + A++  
Sbjct: 235 NSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAAL-- 292

Query: 337 EYGLLPGVEHHV---CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
              L  G E ++    ++ ++ + G ++ A +  ++ I EK   + W +ML     +  +
Sbjct: 293 ---LKSGSEVNIQCNALLVMYTKCGRVDSALRVFRE-IDEKDYIS-WNSMLSCYVQNGLY 347

Query: 394 DLGVEVAEHLL--SVEPENP---------GHYVMLSN-----IYALAGRMDRVEVVRNIM 437
              +E    +L    +P++          GH   L N      YA+  R+D    V N +
Sbjct: 348 AEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTL 407

Query: 438 IQKGLK-KHVGYS 449
           +   +K +++ YS
Sbjct: 408 MDMYMKCRYIEYS 420


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/500 (39%), Positives = 304/500 (60%), Gaps = 2/500 (0%)

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
           SK  F  ++LL Y  M+ + + P N+ FS  +K+CA L  L +GR VH  V  S    D 
Sbjct: 6   SKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGPDQ 65

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V   L+  Y +    +   KVFD+MP+++V +WNS+ISG+ +     EA+ +F  M+  
Sbjct: 66  VVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQRE 125

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G+     T   +L  CA++  +  G+ +H  IV      +V++  SL++MY +CG V   
Sbjct: 126 GMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYG 185

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           R +FD M   ++ +W  M++GY ++GY   A++LF+ M + G+RP++VTF+A+LS C+HA
Sbjct: 186 RRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHA 245

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
           GL ++G ++F  M  ++G+ P +EH+ C+VD+ GRAG ++ A   VK+ +  K + ++W 
Sbjct: 246 GLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKN-MPMKTSGSIWG 304

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
           ++L +C++H    L   +A  L  +EP NPG+YVMLSNIYA AG  D V +VR +M  + 
Sbjct: 305 SLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGMWDSVNMVREMMQTRR 364

Query: 442 LKKHVGYSTVEVDQKNYLFSMGDK-SHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
           ++K  G S ++V  K + F  G      N++E  +  ++L     E GY+P ++  +H++
Sbjct: 365 IRKEAGCSWIQVKNKIHSFVAGGGFEFRNSDEYKKIWNKLREAMEEFGYIPNTDVVLHDV 424

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
            EE +   +  HSE+LA  F L+ T+ GM IRI KNLR+CVDCHS IK +S  T R I++
Sbjct: 425 NEETKAMWVCGHSERLATVFSLIHTAAGMPIRITKNLRVCVDCHSWIKIVSRVTGRVIVL 484

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RD  RFHHFK G+CSC DYW
Sbjct: 485 RDTNRFHHFKEGACSCNDYW 504



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 128/261 (49%), Gaps = 4/261 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P + A+   LKA   L+ L   + VHA ++ +  G  + +   LL L           +
Sbjct: 27  EPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLK 86

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  +   +N+LI    K +   ++L  +RRM    +  S  T + ++  CA ++ 
Sbjct: 87  VFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILPICARVTA 146

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +H  +  S    D+ V  +LV+ Y K   VD  R++FD M  K + +WN+M++G
Sbjct: 147 LLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTG 206

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDV 240
           Y  NG+ + A+ LFN M   G+ PD  T + +L+ C+  G  + G +  H   +  G+  
Sbjct: 207 YAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVSP 266

Query: 241 NVVLATSLINMYARCGNVSKA 261
           ++     L++M  R G +  A
Sbjct: 267 SLEHYACLVDMLGRAGRIDAA 287


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/553 (38%), Positives = 324/553 (58%), Gaps = 34/553 (6%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           I  A+++F  IP  D  +   +I    +     ++   +  M V N+    +T++ ++  
Sbjct: 161 IDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNV----FTWTTMVSG 216

Query: 116 CAHLSILNLGRA----------VHCHVFVSGYDSDLHVQAALVNF--------------- 150
            A    +++ R           V     + GY     ++ A   F               
Sbjct: 217 YAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMI 276

Query: 151 --YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
             +  +  +  AR +F+ M ++    WN+MI  +E+ G   EA+GLF  M+  GV  +  
Sbjct: 277 LQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFP 336

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           + + VL+ CA L  +D GR VH  +V    D ++ +A+ LI MY +CG++ +A+ IF+  
Sbjct: 337 SMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRF 396

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
              +V+ W +MI+GY  HG G EA+ +FH M + GV+P+ VTF+ VLSAC+++G V+EG 
Sbjct: 397 LFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGF 456

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
            +F +M+  Y + PG+EH+ CMVDL GRAG ++EA + V+ +  E P   VW A+LGAC+
Sbjct: 457 EIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPME-PDAIVWGALLGACR 515

Query: 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGY 448
            H   DL     E L  +EP+N G YV+LS++YA  GR   VEV+R   I + + K  G 
Sbjct: 516 NHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRK-KINRRVIKFPGC 574

Query: 449 STVEVDQKNYLFSMGD-KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREY 507
           S +EV++K ++F+ GD KSHP  + I Q L++L G  REAGY P+    +H+++EEE+ +
Sbjct: 575 SWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEEEKTH 634

Query: 508 SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFH 567
           SL YHSE+LA+A+GL++   GM IR++KNLR+C DCHSAIK I+  T REII+RD  RFH
Sbjct: 635 SLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFH 694

Query: 568 HFKRGSCSCLDYW 580
           HFK GSCSC D+W
Sbjct: 695 HFKDGSCSCKDFW 707



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 121/230 (52%), Gaps = 2/230 (0%)

Query: 53  AGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAV 112
           AG +  A+ +F  +   D   +N +I    +     ++L  + RM    ++ +  +  +V
Sbjct: 282 AGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISV 341

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           +  CA L+ L+ GR VH  +  S +D DL+V + L+  Y K  ++  A+ +F+R   K V
Sbjct: 342 LSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDV 401

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           V WNSMI+GY Q+G  +EA+ +F+ M   GV PD  T + VL+AC+  G +  G  + E 
Sbjct: 402 VMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEA 461

Query: 233 I-VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMI 280
           +     ++  +     ++++  R G V +A E+ + M  E + I W A++
Sbjct: 462 MKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALL 511



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 124/252 (49%), Gaps = 24/252 (9%)

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
            +++ Y K+  V  ARKVFD MP+++VV+W SM+ GY Q G  +EA  LF  M    V  
Sbjct: 88  GMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNV-- 145

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
              +   ++    +   ID  + + + I     + +VV+ T++I  Y + G + +ARE+F
Sbjct: 146 --VSWTVMIGGLLKESRIDDAKKLFDMIP----EKDVVVVTNMIGGYCQVGRLDEARELF 199

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D M   NV  WT M+SGY  +G    A +LF  M       N V++ A+L     +G ++
Sbjct: 200 DEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPER----NEVSWTAMLMGYTQSGRMK 255

Query: 326 EGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           E   +F +M  ++ +        C  M+  FG AG ++ A    + +  ++     W AM
Sbjct: 256 EAFELFEAMPVKWIV-------ACNEMILQFGLAGEMHRARMMFEGM--KERDEGTWNAM 306

Query: 384 LGACKMHKNFDL 395
           +   +  K  DL
Sbjct: 307 IKVFE-RKGLDL 317



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 124/287 (43%), Gaps = 65/287 (22%)

Query: 148 VNFYAKSNNVDVARKVFDR--MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           ++ Y +  ++  ARKVFD   +P +++ +WN+M+S Y ++   ++A+ LF+ M      P
Sbjct: 26  ISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQM------P 79

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
                                              N V    +I+ Y + G V+ AR++F
Sbjct: 80  QR---------------------------------NTVSFNGMISGYVKNGMVADARKVF 106

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D+M E NV++WT+M+ GY   G   EA +LF  M     R N V++  ++        + 
Sbjct: 107 DVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEM----PRRNVVSWTVMIGGLLKESRID 162

Query: 326 EGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WT 381
           +  ++F        ++P  +  V   M+  + + G L+EA    +++  E     V  WT
Sbjct: 163 DAKKLF-------DMIPEKDVVVVTNMIGGYCQVGRLDEA----RELFDEMKVRNVFTWT 211

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRM 427
            M+     +   D    VA  L  V PE N   +  +   Y  +GRM
Sbjct: 212 TMVSGYAKNGRVD----VARKLFEVMPERNEVSWTAMLMGYTQSGRM 254



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 107/251 (42%), Gaps = 40/251 (15%)

Query: 246 TSLINMYARCGNVSKAREIFD--MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           TS I+ Y R G++  AR++FD   + +  + +W AM+S Y       +A+ LF +M    
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQR- 81

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
              N V+F  ++S     G+V +  +VF  M +       V     MV  + + G++ EA
Sbjct: 82  ---NTVSFNGMISGYVKNGMVADARKVFDVMPER-----NVVSWTSMVRGYVQEGMVEEA 133

Query: 364 YKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI- 420
            K    +  E P   V  WT M+G        D     A+ L  + PE     V+++N+ 
Sbjct: 134 EK----LFWEMPRRNVVSWTVMIGGLLKESRID----DAKKLFDMIPEK--DVVVVTNMI 183

Query: 421 --YALAGRMDRVE------VVRNIMIQKGLKKHVGYS-TVEVDQKNYLFSMGDKSHPNTN 471
             Y   GR+D          VRN+     +    GY+    VD    LF +     P  N
Sbjct: 184 GGYCQVGRLDEARELFDEMKVRNVFTWTTMVS--GYAKNGRVDVARKLFEV----MPERN 237

Query: 472 EIYQYLDELMG 482
           E+  +   LMG
Sbjct: 238 EV-SWTAMLMG 247


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/556 (38%), Positives = 315/556 (56%), Gaps = 1/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H  +I A       +   L+ +    G +  A+++F  IP  D  L+N LI   S  
Sbjct: 325 RQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHG 384

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +SL  + RM       +  T +AV+KS A L  ++    VH      G+ SD HV 
Sbjct: 385 GCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVV 444

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             L++ Y K N +  A KVF+     +++A+ SMI+   Q    ++AI LF  M   G+ 
Sbjct: 445 NGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLE 504

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD      +L ACA L   + G+ VH  ++ +    +V    +L+  YA+CG++  A   
Sbjct: 505 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLA 564

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  + +  V++W+AMI G   HG+G  A+++F RM    + PN++T  +VL AC HAGLV
Sbjct: 565 FSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLV 624

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            E    F+SM++ +G+    EH+ CM+DL GRAG L++A + V  +  E  A AVW A+L
Sbjct: 625 DEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANA-AVWGALL 683

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            A ++H++ +LG   AE L  +EPE  G +V+L+N YA AG  D V  VR +M    +KK
Sbjct: 684 AASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKK 743

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
               S VE+  + + F +GDKSHP   +IY  L+EL     +AGYVP  E  +H++++ E
Sbjct: 744 EPAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSE 803

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E  L +HSE+LA+AF L+ T  G  IR+ KNLR+C DCH A KFIS   +REII+RD  
Sbjct: 804 KELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDIN 863

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF  G+CSC DYW
Sbjct: 864 RFHHFSDGACSCGDYW 879



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 182/369 (49%), Gaps = 19/369 (5%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
            +HAHL+ +G     +    LLS          A+R+F   P P    +++L+   S   
Sbjct: 25  HIHAHLLKSGL--LHAFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNA 82

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
              ++L  +R M    +  + +    V+K CA  +   LG  VH     +G   D+ V  
Sbjct: 83  LPREALAAFRAMRARGVRCNEFALPIVLK-CAPDA--GLGVQVHAVAVSTGLSGDIFVAN 139

Query: 146 ALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ALV  Y     VD AR+VFD    D++ V+WN M+S + +N    +A+ LF  M   GV 
Sbjct: 140 ALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVR 199

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+     CV+ AC    D++ GR VH  +V  G D +V  A +L++MY++ G++  A  +
Sbjct: 200 PNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALV 259

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  + + +V++W A ISG  +HG+   A+EL  +M++ G+ PN  T  ++L ACA AG  
Sbjct: 260 FGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAG 319

Query: 325 QEGHRVFASMRQEYGLLPGVEHH------VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
                  A  RQ +G +            V +VD++ + GLL++A K  + +   +    
Sbjct: 320 AF-----ALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWI--PRKDLL 372

Query: 379 VWTAMLGAC 387
           +W A++  C
Sbjct: 373 LWNALISGC 381



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 202/433 (46%), Gaps = 41/433 (9%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF-FCIPS 68
           A   +LK  P      QVHA  +  G      +   L+++    GF+  A+R+F      
Sbjct: 105 ALPIVLKCAPDAGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARD 164

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
            ++  +N ++    K +  +D++  +  M+ S + P+ + FS V+ +C     L  GR V
Sbjct: 165 RNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKV 224

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H  V  +GYD D+    ALV+ Y+K  ++ +A  VF ++P   VV+WN+ ISG   +G  
Sbjct: 225 HAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHD 284

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVL--AACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
           + A+ L   M+  G+ P+  T   +L   A A  G   LGR +H F++    D +  +  
Sbjct: 285 QHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGV 344

Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
           +L++MYA+ G +  AR++F+ +   +++ W A+ISG    G   E++ LF RMR  G   
Sbjct: 345 ALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDI 404

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAY 364
           N  T  AVL + A    + +  +V A + ++ G L   + HV   ++D + +   L  A 
Sbjct: 405 NRTTLAAVLKSTASLEAISDTTQVHA-LAEKIGFLS--DSHVVNGLIDSYWKCNCLRYAN 461

Query: 365 KFV------------------------KDVI---------GEKPAPAVWTAMLGACKMHK 391
           K                          +D I         G +P P V +++L AC    
Sbjct: 462 KVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLS 521

Query: 392 NFDLGVEVAEHLL 404
            ++ G +V  HL+
Sbjct: 522 AYEQGKQVHAHLI 534



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/436 (26%), Positives = 203/436 (46%), Gaps = 15/436 (3%)

Query: 5   QPHSPAYEAILKA--GPR-LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   +  ++ A  G R L+  ++VHA ++  GY +       L+ +    G I  A  
Sbjct: 199 RPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAAL 258

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  D   +N  I           +L    +M  S + P+ +T S+++K+CA    
Sbjct: 259 VFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGA 318

Query: 122 LNLG--RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
                 R +H  +  +  DSD ++  ALV+ YAK   +D ARKVF+ +P K ++ WN++I
Sbjct: 319 GAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALI 378

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           SG    G   E++ LF  MR  G + + TT   VL + A L  I     VH      G  
Sbjct: 379 SGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFL 438

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            +  +   LI+ Y +C  +  A ++F+  S  N+IA+T+MI+      +G +A++LF  M
Sbjct: 439 SDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEM 498

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
              G+ P+     ++L+ACA     ++G +V A + +    +  V     +V  + + G 
Sbjct: 499 LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRK-FMTDVFAGNALVYTYAKCGS 557

Query: 360 LNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           + +A      +    P   V  W+AM+G    H +    ++V   ++  E   P H  + 
Sbjct: 558 IEDADLAFSGL----PDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVD-ERIAPNHITLT 612

Query: 418 SNIYAL--AGRMDRVE 431
           S + A   AG +D  +
Sbjct: 613 SVLCACNHAGLVDEAK 628


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/578 (37%), Positives = 340/578 (58%), Gaps = 16/578 (2%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y  ++K    LK L   +Q+H+ ++  G+  + +++T L       G +  A  IF    
Sbjct: 305 YATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTT 364

Query: 68  SPDSFLFNTLIIRNSKANFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
              + +  T II     N     +++ + RM    + P+ +T+SA++K  A LSIL    
Sbjct: 365 GSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLK--ASLSILP--P 420

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H  V  + Y     V  AL+  Y+K  + + A  +F  +  K VVAW++M+S + Q G
Sbjct: 421 QIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAG 480

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA-QLGDIDLGRWVHEFIVGQGLDVNVVLA 245
             + A  LFN M   G+ P+  T   V+ ACA     +D GR  H   +       + ++
Sbjct: 481 DCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVS 540

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           ++L++MY+R GN+  A+ +F+  ++ ++++W +MISGY  HGY  +A+E F +M A G++
Sbjct: 541 SALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQ 600

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
            + VTF+AV+  C H GLV EG + F SM +++ + P +EH+ CMVDL+ RAG L+E   
Sbjct: 601 MDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMS 660

Query: 366 FVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
            ++D+    P PA   VW  +LGAC++HKN +LG   A+ LLS+EP +   YV+LSNIYA
Sbjct: 661 LIRDM----PFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYA 716

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            AG+    + VR +M  + +KK  G S +++  K + F   DKSHP +++IY+ L  ++ 
Sbjct: 717 AAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIIT 776

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           R ++ GY P +   +H++ E+++E  L  HSE+LALAFGL+ T PG  ++IVKNLR+C D
Sbjct: 777 RLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGD 836

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH  +K +S+  +REII+RD  RFHHF  G+CSC D+W
Sbjct: 837 CHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 192/402 (47%), Gaps = 10/402 (2%)

Query: 25  QQVHAHLIVAGYGRSR-SMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           +Q+H   +  G+ R   S  T L+ +    G +     +F  +P  +   + +L+   + 
Sbjct: 119 EQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAH 178

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
           A   ++ +  + RM    I P+ +TF++V+ + A    L+LG+ VH      G  S + V
Sbjct: 179 AQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFV 238

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             +L+N YAK   V+ A+ VF+ M  + +V+WN++++G + N    EA+ LF+  R    
Sbjct: 239 CNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMG 298

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
               +T   V+  CA L  + L R +H  ++  G  +   + T+L + Y++CG ++ A  
Sbjct: 299 KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALN 358

Query: 264 IFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           IF M +   NV++WTA+ISG   +G    AV LF RMR   V PN  T+ A+L A     
Sbjct: 359 IFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSIL 418

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
             Q   +V   ++  Y  +P V     ++  + + G   +A    K +  E+     W+A
Sbjct: 419 PPQIHAQV---IKTNYQHIPSV--GTALLASYSKFGSTEDALSIFKMI--EQKDVVAWSA 471

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
           ML +C        G     + ++++   P  + + S I A A
Sbjct: 472 ML-SCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACA 512



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 145/291 (49%), Gaps = 3/291 (1%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLHVQAALVNFYAKSNNVDVARKVFDR 166
           T S V+K+C  +    LG  +HC     G+D  ++    +LV+ Y K  +V    +VF+ 
Sbjct: 101 TLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEG 160

Query: 167 MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
           MP K+VV W S+++G        E + LF  MR  G+ P+  T   VL+A A  G +DLG
Sbjct: 161 MPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLG 220

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
           + VH   V  G   +V +  SL+NMYA+CG V  A+ +F+ M   ++++W  +++G  ++
Sbjct: 221 QRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLN 280

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
               EA++LFH  RA   +    T+  V+  CA+   +    ++ + + +    L G   
Sbjct: 281 ECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTG-NV 339

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
              + D + + G L +A        G +   + WTA++  C  + +  L V
Sbjct: 340 MTALADAYSKCGELADALNIFSMTTGSRNVVS-WTAIISGCIQNGDIPLAV 389



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 160 ARKVFDRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
           AR   D +P + + V  N ++  Y + G   E +  F++ R  GV  DS T  CVL AC 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLA-TSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
            + D  LG  +H   V  G D   V A TSL++MY +CG+V +  E+F+ M + NV+ WT
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           ++++G       +E + LF RMRA G+ PN  TF +VLSA A  G +  G RV A    +
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQ-SVK 229

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEA 363
           +G    V     +++++ + GL+ +A
Sbjct: 230 FGCRSSVFVCNSLMNMYAKCGLVEDA 255


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/525 (37%), Positives = 319/525 (60%), Gaps = 4/525 (0%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS--PSNYTFSAVIKSC 116
           A+++F  +P  D   +N+LI   S   +         RM++S +   P+  TF ++I +C
Sbjct: 85  AEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISAC 144

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
            +      GR +H  V   G   ++ V  A +N+Y K+ ++  + K+F+ +  K++V+WN
Sbjct: 145 VYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWN 204

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
           +MI  + QNG A++ +  FN+ R  G  PD  T + VL +C  +G + L + +H  I+  
Sbjct: 205 TMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFG 264

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
           G   N  + T+L+++Y++ G +  +  +F  ++  + +AWTAM++ Y  HG+G +A++ F
Sbjct: 265 GFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHF 324

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
             M  +G+ P++VTF  +L+AC+H+GLV+EG   F +M + Y + P ++H+ CMVDL GR
Sbjct: 325 ELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGR 384

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
           +GLL +AY  +K++  E P+  VW A+LGAC+++K+  LG + AE L  +EP +  +YVM
Sbjct: 385 SGLLQDAYGLIKEMPME-PSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVM 443

Query: 417 LSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQY 476
           LSNIY+ +G       +RN+M QKGL +  G S +E   K + F +GD SHP + +I + 
Sbjct: 444 LSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKK 503

Query: 477 LDELMGRCR-EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVK 535
           L E+  + + E GY  ++E  +H++ E+ +E  +  HSEK+A+AFGL+  SP   I I K
Sbjct: 504 LKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRK 563

Query: 536 NLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           NLR+C DCH   K IS+   R II+RD  RFHHF  GSCSC DYW
Sbjct: 564 NLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/578 (37%), Positives = 340/578 (58%), Gaps = 16/578 (2%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y  ++K    LK L   +Q+H+ ++  G+  + +++T L       G +  A  IF    
Sbjct: 305 YATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTT 364

Query: 68  SPDSFLFNTLIIRNSKANFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
              + +  T II     N     +++ + RM    + P+ +T+SA++K  A LSIL    
Sbjct: 365 GSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLK--ASLSILP--P 420

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H  V  + Y     V  AL+  Y+K  + + A  +F  +  K VVAW++M+S + Q G
Sbjct: 421 QIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAG 480

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA-QLGDIDLGRWVHEFIVGQGLDVNVVLA 245
             + A  LFN M   G+ P+  T   V+ ACA     +D GR  H   +       + ++
Sbjct: 481 DCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVS 540

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           ++L++MY+R GN+  A+ +F+  ++ ++++W +MISGY  HGY  +A+E F +M A G++
Sbjct: 541 SALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQ 600

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
            + VTF+AV+  C H GLV EG + F SM +++ + P +EH+ CMVDL+ RAG L+E   
Sbjct: 601 MDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMS 660

Query: 366 FVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
            ++D+    P PA   VW  +LGAC++HKN +LG   A+ LLS+EP +   YV+LSNIYA
Sbjct: 661 LIRDM----PFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYA 716

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            AG+    + VR +M  + +KK  G S +++  K + F   DKSHP +++IY+ L  ++ 
Sbjct: 717 AAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIIT 776

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           R ++ GY P +   +H++ E+++E  L  HSE+LALAFGL+ T PG  ++IVKNLR+C D
Sbjct: 777 RLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGD 836

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH  +K +S+  +REII+RD  RFHHF  G+CSC D+W
Sbjct: 837 CHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 192/402 (47%), Gaps = 10/402 (2%)

Query: 25  QQVHAHLIVAGYGRSR-SMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           +Q+H   +  G+ R   S  T L+ +    G +     +F  +P  +   + +L+   + 
Sbjct: 119 EQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAH 178

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
           A   ++ +  + RM    I P+ +TF++V+ + A    L+LG+ VH      G  S + V
Sbjct: 179 AQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFV 238

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             +L+N YAK   V+ A+ VF+ M  + +V+WN++++G + N    EA+ LF+  R    
Sbjct: 239 CNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMG 298

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
               +T   V+  CA L  + L R +H  ++  G  +   + T+L + Y++CG ++ A  
Sbjct: 299 KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALN 358

Query: 264 IFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           IF M +   NV++WTA+ISG   +G    AV LF RMR   V PN  T+ A+L A     
Sbjct: 359 IFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSIL 418

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
             Q   +V   ++  Y  +P V     ++  + + G   +A    K +  E+     W+A
Sbjct: 419 PPQIHAQV---IKTNYQHIPFV--GTALLASYSKFGSTEDALSIFKMI--EQKDVVAWSA 471

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
           ML +C        G     + ++++   P  + + S I A A
Sbjct: 472 ML-SCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACA 512



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 145/291 (49%), Gaps = 3/291 (1%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLHVQAALVNFYAKSNNVDVARKVFDR 166
           T S V+K+C  +    LG  +HC     G+D  ++    +LV+ Y K  +V    +VF+ 
Sbjct: 101 TLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEG 160

Query: 167 MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
           MP K+VV W S+++G        E + LF  MR  G+ P+  T   VL+A A  G +DLG
Sbjct: 161 MPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLG 220

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
           + VH   V  G   +V +  SL+NMYA+CG V  A+ +F+ M   ++++W  +++G  ++
Sbjct: 221 QRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLN 280

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
               EA++LFH  RA   +    T+  V+  CA+   +    ++ + + +    L G   
Sbjct: 281 ECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTG-NV 339

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
              + D + + G L +A        G +   + WTA++  C  + +  L V
Sbjct: 340 MTALADAYSKCGELADALNIFSMTTGSRNVVS-WTAIISGCIQNGDIPLAV 389



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 160 ARKVFDRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
           AR   D +P + + V  N ++  Y + G   E +  F++ R  GV  DS T  CVL AC 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLA-TSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
            + D  LG  +H   V  G D   V A TSL++MY +CG+V +  E+F+ M + NV+ WT
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           ++++G       +E + LF RMRA G+ PN  TF +VLSA A  G +  G RV A    +
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQ-SVK 229

Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEA 363
           +G    V     +++++ + GL+ +A
Sbjct: 230 FGCRSSVFVCNSLMNMYAKCGLVEDA 255


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/542 (36%), Positives = 304/542 (56%), Gaps = 6/542 (1%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI-----IRNSKANFSTDSLLFYRRMI 98
           T LL      G +  A +IF  +P P+  ++N +I     +      F+ +++  +  M 
Sbjct: 183 TALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQ 242

Query: 99  VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158
              + PS +TFS+++K+C+ +     G+ +H  +F     SD  +  ALV  Y+ S +++
Sbjct: 243 SRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIE 302

Query: 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
              K F   P   VV+W S+I G+ QNG  +  + LF+ +   G  PD  T   +L+ACA
Sbjct: 303 DGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACA 362

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
            L  +  G  +H + +  G+    ++  S I MYA+CG++  A   F      ++++W+ 
Sbjct: 363 NLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSV 422

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           MIS    HG   EAV+LF  M+  G+ PN++TF+ VL AC+H GLV+EG R F  M++++
Sbjct: 423 MISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDH 482

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
           G+ P V+H  C+VDL GRAG L EA  F+ D  G +  P +W ++L AC++HK  D G  
Sbjct: 483 GITPNVKHSACIVDLLGRAGRLAEAESFIMDS-GFEGDPVMWRSLLSACRVHKATDTGKR 541

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458
           VAE ++ +EPE    YV+L NIY  AG       +RN+M  +G+KK  G S +EV    +
Sbjct: 542 VAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVH 601

Query: 459 LFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLAL 518
            F  GD+SHPN+  IY  L+E++   ++  Y+ E   +     + +    + YHSEKLA+
Sbjct: 602 SFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDEKLVSDASEPKHKDNSMVSYHSEKLAV 661

Query: 519 AFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLD 578
            FG++       +R++KNLR C  CH  +K  S   NREII+RD +RFH F+ GSCSC D
Sbjct: 662 TFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGD 721

Query: 579 YW 580
           YW
Sbjct: 722 YW 723



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 210/440 (47%), Gaps = 18/440 (4%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +HA + V+G G    +   L+ + C  G I +A+ +F      DS  +N+LI    +   
Sbjct: 63  IHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGS 122

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAH--LSILNLGRAVHCHVFVSGYDSDLHVQ 144
           + + L    +M+   ++ ++Y   + +K+C     S +  G+ +H      G D D+ V 
Sbjct: 123 NDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVG 182

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ-----NGFAKEAIGLFNLMR 199
            AL++ YAK  +++ A K+F  MPD +VV +N+MI+G+ Q     + FA EA+ LF  M+
Sbjct: 183 TALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQ 242

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+ P   T   +L AC+ +   + G+ +H  I    L  +  +  +L+ +Y+  G++ 
Sbjct: 243 SRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIE 302

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
              + F    +L+V++WT++I G+  +G     + LFH +   G +P+  T   +LSACA
Sbjct: 303 DGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACA 362

Query: 320 HAGLVQEGHRVFA-SMRQEYGLLPGVEH-HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           +   V+ G ++ A +++   G    +++  +CM    G     N  +K  K+     P  
Sbjct: 363 NLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKN-----PDI 417

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
             W+ M+ +   H      V++ E L+      P H   L  + A +      E +R   
Sbjct: 418 VSWSVMISSNAQHGCAKEAVDLFE-LMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFE 476

Query: 438 IQK---GLKKHVGYSTVEVD 454
           I K   G+  +V +S   VD
Sbjct: 477 IMKKDHGITPNVKHSACIVD 496



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 182/368 (49%), Gaps = 12/368 (3%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
           +P  +   +N+LI   ++  F  + +  ++   +S++    +TFS  +  C     L LG
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           R +H  + VSG    + +  +L++ Y K   +D AR VF+   +   V+WNS+I+GY + 
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ--LGDIDLGRWVHEFIVGQGLDVNVV 243
           G   E + L   M   G+N +S      L AC       I+ G+ +H   V  GLD++VV
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY-----GMHGYGTEAVELFHR 298
           + T+L++ YA+ G++  A +IF +M + NV+ + AMI+G+         +  EA+ LF  
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFE 240

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M++ G++P+  TF ++L AC+     + G ++ A + + Y L         +V+L+  +G
Sbjct: 241 MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK-YNLQSDEFIGNALVELYSLSG 299

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SVEPENPGHYVM 416
            + +  K        K     WT+++     +  F+ G+ +   LL    +P+     +M
Sbjct: 300 SIEDGLKCFHST--PKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIM 357

Query: 417 LSNIYALA 424
           LS    LA
Sbjct: 358 LSACANLA 365



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 138/290 (47%), Gaps = 5/290 (1%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           +  +P    + +ILKA   ++  +   Q+HA +          +   L+ L   +G I  
Sbjct: 244 RGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIED 303

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
             + F   P  D   + +LI+ + +       L  +  ++ S   P  +T S ++ +CA+
Sbjct: 304 GLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACAN 363

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L+ +  G  +H +   +G  +   +Q + +  YAK  ++D A   F    +  +V+W+ M
Sbjct: 364 LAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVM 423

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQG 237
           IS   Q+G AKEA+ LF LM+  G+ P+  T + VL AC+  G ++ G R+        G
Sbjct: 424 ISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHG 483

Query: 238 LDVNVVLATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMH 286
           +  NV  +  ++++  R G +++A   I D   E + + W +++S   +H
Sbjct: 484 ITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVH 533


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/542 (36%), Positives = 304/542 (56%), Gaps = 6/542 (1%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI-----IRNSKANFSTDSLLFYRRMI 98
           T LL      G +  A +IF  +P P+  ++N +I     +      F+ +++  +  M 
Sbjct: 262 TALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQ 321

Query: 99  VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158
              + PS +TFS+++K+C+ +     G+ +H  +F     SD  +  ALV  Y+ S +++
Sbjct: 322 SRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIE 381

Query: 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
              K F   P   VV+W S+I G+ QNG  +  + LF+ +   G  PD  T   +L+ACA
Sbjct: 382 DGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACA 441

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
            L  +  G  +H + +  G+    ++  S I MYA+CG++  A   F      ++++W+ 
Sbjct: 442 NLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSV 501

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           MIS    HG   EAV+LF  M+  G+ PN++TF+ VL AC+H GLV+EG R F  M++++
Sbjct: 502 MISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDH 561

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
           G+ P V+H  C+VDL GRAG L EA  F+ D  G +  P +W ++L AC++HK  D G  
Sbjct: 562 GITPNVKHSACIVDLLGRAGRLAEAESFIMDS-GFEGDPVMWRSLLSACRVHKATDTGKR 620

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458
           VAE ++ +EPE    YV+L NIY  AG       +RN+M  +G+KK  G S +EV    +
Sbjct: 621 VAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVH 680

Query: 459 LFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLAL 518
            F  GD+SHPN+  IY  L+E++   ++  Y+ E   +     + +    + YHSEKLA+
Sbjct: 681 SFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDEKLVSDASEPKHKDNSMVSYHSEKLAV 740

Query: 519 AFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLD 578
            FG++       +R++KNLR C  CH  +K  S   NREII+RD +RFH F+ GSCSC D
Sbjct: 741 TFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGD 800

Query: 579 YW 580
           YW
Sbjct: 801 YW 802



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 211/442 (47%), Gaps = 22/442 (4%)

Query: 3   NKQPH-------SPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCD 52
           N QP+       S  Y  +++   R   L   +  H H+I   +     +L  LL + C 
Sbjct: 7   NPQPYYLGLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCK 66

Query: 53  AGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAV 112
            G    A+++F  +P  +   +N+LI   ++  F  + +  ++   +S++    +TFS  
Sbjct: 67  CGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNA 126

Query: 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
           +  C     L LGR +H  + VSG    + +  +L++ Y K   +D AR VF+   +   
Sbjct: 127 LSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDS 186

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ--LGDIDLGRWVH 230
           V+WNS+I+GY + G   E + L   M   G+N +S      L AC       I+ G+ +H
Sbjct: 187 VSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLH 246

Query: 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM----- 285
              V  GLD++VV+ T+L++ YA+ G++  A +IF +M + NV+ + AMI+G+       
Sbjct: 247 GCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMA 306

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
             +  EA+ LF  M++ G++P+  TF ++L AC+     + G ++ A + + Y L     
Sbjct: 307 DEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK-YNLQSDEF 365

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL- 404
               +V+L+  +G + +  K        K     WT+++     +  F+ G+ +   LL 
Sbjct: 366 IGNALVELYSLSGSIEDGLKCFHST--PKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLF 423

Query: 405 -SVEPENPGHYVMLSNIYALAG 425
              +P+     +MLS    LA 
Sbjct: 424 SGRKPDEFTISIMLSACANLAA 445



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 138/290 (47%), Gaps = 5/290 (1%)

Query: 2   KNKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           +  +P    + +ILKA   ++  +   Q+HA +          +   L+ L   +G I  
Sbjct: 323 RGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIED 382

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
             + F   P  D   + +LI+ + +       L  +  ++ S   P  +T S ++ +CA+
Sbjct: 383 GLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACAN 442

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L+ +  G  +H +   +G  +   +Q + +  YAK  ++D A   F    +  +V+W+ M
Sbjct: 443 LAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVM 502

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQG 237
           IS   Q+G AKEA+ LF LM+  G+ P+  T + VL AC+  G ++ G R+        G
Sbjct: 503 ISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHG 562

Query: 238 LDVNVVLATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMH 286
           +  NV  +  ++++  R G +++A   I D   E + + W +++S   +H
Sbjct: 563 ITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVH 612


>gi|297805646|ref|XP_002870707.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316543|gb|EFH46966.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 517

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/518 (38%), Positives = 315/518 (60%), Gaps = 4/518 (0%)

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS--PSNYTFSAVIKSCAHLSILN 123
           +P  D   +N+LI   +   +         RM+ S +   P+  TF ++I +C H     
Sbjct: 1   MPERDLVAWNSLISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKE 60

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
            G  +H  V  SG   ++ V  AL+N Y K+ ++  + K+F+ +  K++V+WN+MI  + 
Sbjct: 61  EGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHL 120

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           QNG A+E +  FN+ R  G+ PD  T + VL  C  +G + L + +H  I+  G + N  
Sbjct: 121 QNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTC 180

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           + T+L+++YA+ G +  +  +F  ++  + +AWTAM++ Y  HGYG +A++ F  M  +G
Sbjct: 181 ITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYG 240

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           + P++VTF  +L+AC+H+GLV+EG   F +M + Y + P ++H+ CMVDL GR+GLL +A
Sbjct: 241 LSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDA 300

Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
           Y  +K++  E P+  VW A+LGAC+++K+  LG + A+ L  +EP +  +Y+MLSNIY+ 
Sbjct: 301 YGLIKEMPME-PSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSA 359

Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
           +G       +RN+M QKGL +  GYS +E   K + F +GD SHP + +I + L E+  +
Sbjct: 360 SGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKK 419

Query: 484 CR-EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
            + E G+   +E  +H+++E+ +E  +  HSEK+A+AFGL+  SP   I I KNLR+C D
Sbjct: 420 MKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGD 479

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH   K IS+   R II+RD  RFHHF  GSCSC DYW
Sbjct: 480 CHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 517



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 153/316 (48%), Gaps = 9/316 (2%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H  ++ +G      ++  L++L    G +  + ++F  +   +   +NT+I+ + +   
Sbjct: 65  IHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGL 124

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
           + + L ++       + P   TF AV++ C  + ++ L + +H  +   G++++  +  A
Sbjct: 125 AEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTA 184

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ YAK   ++ +  VF  +     +AW +M++ Y  +G+ ++AI  F LM  +G++PD
Sbjct: 185 LLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPD 244

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKAREIF 265
             T   +L AC+  G ++ GR+  E +  +  ++  +   + ++++  R G +  A  + 
Sbjct: 245 HVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLI 304

Query: 266 -DMMSELNVIAWTAMISG---YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
            +M  E +   W A++     Y     GT+A +    +     R N +    + SA   +
Sbjct: 305 KEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGR-NYIMLSNIYSA---S 360

Query: 322 GLVQEGHRVFASMRQE 337
           GL ++  R+   M+Q+
Sbjct: 361 GLWKDASRIRNLMKQK 376



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/272 (18%), Positives = 105/272 (38%), Gaps = 52/272 (19%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + A+L+    +  +   Q +H  ++  G+  +  + T LL L    G +  +  
Sbjct: 141 KPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSST 200

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  I SPDS  +  ++   +   +  D++  +  M+   +SP + TF+ ++ +C+H  +
Sbjct: 201 VFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGL 260

Query: 122 LNLGRAVHCHVFVSGY--DSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSM 178
           +  GR  +       Y  +  L   + +V+   +S  +  A  +   MP + S   W ++
Sbjct: 261 VEEGR-YYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGAL 319

Query: 179 ISG----------------------------------YEQNGFAKEAIGLFNLMRDFGVN 204
           +                                    Y  +G  K+A  + NLM+  G  
Sbjct: 320 LGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKG-- 377

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
                    L   +    I+ G  +H+F+VG 
Sbjct: 378 ---------LVRASGYSYIEHGNKIHKFVVGD 400


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 235/631 (37%), Positives = 342/631 (54%), Gaps = 61/631 (9%)

Query: 3   NKQPHSPAYEAILKAGPR---LKPLQQVHAHLIVAG--YGRSRSMLTKLLSLVCDAGFIT 57
            +Q  +  + ++L+   R   ++P +Q+HA   V+G  +  S  +L  LL L       +
Sbjct: 7   TQQQCALIFRSLLRQCARASAVRPGEQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPS 66

Query: 58  YAQRIFFCIPSP--DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           +A+++F  IP    DS  +  LI    + +   D+L FY +M    +          + +
Sbjct: 67  HARKLFDRIPHSHKDSVDYTALI----RCSHPLDALRFYLQMRQRALPLDGVALICALGA 122

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF----------- 164
           C+ L   NL   +H  V   G+     V   +++ Y K   V  AR+VF           
Sbjct: 123 CSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSW 182

Query: 165 --------------------DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR---DF 201
                               D MP+++ VAW  +I GY  +GF KEA  L   M     F
Sbjct: 183 TVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGF 242

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV-GQGLDVNVVLATSLINMYARCGNVSK 260
           G   +S T   VL+AC+Q GD+ +GRWVH + V   G D+ V++ TSL++MYA+CG +S 
Sbjct: 243 GFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISA 302

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A  +F  M   NV+AW AM+ G  MHG G   VE+F  M    V+P+ VTF+A+LS+C+H
Sbjct: 303 ALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACM-VEEVKPDAVTFMALLSSCSH 361

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
           +GLV++G + F  + + YG+ P +EH+ CMVDL GRAG L EA   VK  +   P   V 
Sbjct: 362 SGLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRLEEAEDLVKK-LPIPPNEVVL 420

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
            ++LGAC  H    LG ++   L+ ++P N  ++++LSN+YAL G+ D+   +R ++  +
Sbjct: 421 GSLLGACYAHGKLRLGEKIMRELVQMDPLNTEYHILLSNMYALCGKADKANSLRKVLKNR 480

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPES------- 493
           G++K  G S++ VD + + F  GDKSHP T +IY  LD+++ + R AGYVP +       
Sbjct: 481 GIRKVPGMSSIYVDGQLHRFIAGDKSHPRTADIYMKLDDMICKLRLAGYVPNTNCQVLFG 540

Query: 494 ----ESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKF 549
               +  M   EE E+   L  HSEKLAL FGLM T     + I KNLR+C DCHSAIK 
Sbjct: 541 CSNGDDCMEAFEEVEQ--VLFTHSEKLALCFGLMSTPSSSPLCIFKNLRICQDCHSAIKI 598

Query: 550 ISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            S    REI+VRDR RFH FK+GSCSC DYW
Sbjct: 599 ASDIYKREIVVRDRYRFHSFKQGSCSCSDYW 629


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/424 (45%), Positives = 273/424 (64%), Gaps = 1/424 (0%)

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           VD AR+VFD MP +++V+WNSMISGY +     +A+ +F+ MR  GV  +       L A
Sbjct: 180 VDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVA 239

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C   G +  GR ++ ++   G++V+  LAT++++MY +CG V +A  +FD +    +  W
Sbjct: 240 CTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWRVFDSLPARGLTTW 299

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
             MI G+ +HG   +A+ELFH+M A GV P++VT + VL+ACAHAG V EG R    +  
Sbjct: 300 NCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVS 359

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
            +G+ P  EH+ CMVDLFGRAG L+EA K + D +   P  AV  A+LGACK+H + DLG
Sbjct: 360 RHGIEPKGEHYGCMVDLFGRAGQLDEAKKVI-DEMPMDPDLAVLGALLGACKIHGDVDLG 418

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQK 456
             +   ++ ++P+N G YV+L+N+ A AGR D V  VR +M ++ + K  G S +EVD +
Sbjct: 419 EAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDERNVSKEAGRSVIEVDGE 478

Query: 457 NYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKL 516
              F  G+  HP   EIY    +++ R R  GYVP++  A+H++ EE++E +L  HSEKL
Sbjct: 479 ACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKEAALLCHSEKL 538

Query: 517 ALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSC 576
           A+AFGL+R  P  T+RI KNLR+C DCH A K++S    REI+VRDR RFHHFK G CSC
Sbjct: 539 AIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVVRDRSRFHHFKDGMCSC 598

Query: 577 LDYW 580
            DYW
Sbjct: 599 KDYW 602


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/580 (35%), Positives = 328/580 (56%), Gaps = 5/580 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + AIL AG +L  +   QQVH  ++   +  +  +   LL        +  A +
Sbjct: 296 RPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASK 355

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F+ +P  D   +N L+   +      +SL  ++ +  +     N+ F+ ++   A    
Sbjct: 356 LFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLN 415

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L++GR +H    V+   S++ V  +LV+ YAK      A ++F  +  +S V W +MIS 
Sbjct: 416 LDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISS 475

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q G  ++ + LF  M+   +  D+ T   ++ ACA L  + LG+ +H  I+G G   N
Sbjct: 476 YVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISN 535

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V   ++L++MYA+CG++  A ++F  M   N ++W A+IS Y  +G G   + LF  M  
Sbjct: 536 VFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVR 595

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G++P++V+ +++L AC+H GLV+EG + F SM + Y L+P  EH+   +D+  R G  +
Sbjct: 596 SGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFD 655

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP-ENPGHYVMLSNI 420
           EA K +  +  E P   +W+++L +C +HKN +L  + A  L +++   +   YV +SNI
Sbjct: 656 EAEKLMAQMPFE-PDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNI 714

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA AG  D V  V+  M ++G+KK   YS VE+  K ++F+  DK+HP   EI + LDEL
Sbjct: 715 YAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDEL 774

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
             +  + GY P+S  A+H ++EE +  SL+YHSE++A+AF L+ T  G  I ++KNLR C
Sbjct: 775 EEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPEGSPILVMKNLRAC 834

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH+AIK IS    REI VRD  RFHHF+ G C+C DYW
Sbjct: 835 TDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 198/389 (50%), Gaps = 5/389 (1%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           ++QVH+H+I  GY  +  +   LL   C    +  A ++F  IP  DS  FN L+   SK
Sbjct: 217 VRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSK 276

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
             F+ +++  + +M      P+ +TF+A++ +   L  +  G+ VH  V    +  ++ V
Sbjct: 277 EGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFV 336

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             AL++FY+K + V  A K+F  MP+   +++N +++ Y  NG  KE++ LF  ++  G 
Sbjct: 337 ANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGF 396

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           +  +     +L+  A   ++D+GR +H   +       +++  SL++MYA+CG   +A  
Sbjct: 397 DRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANR 456

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           IF  ++  + + WTAMIS Y   G   + ++LF  M+   +  +  T+ +++ ACA    
Sbjct: 457 IFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLAS 516

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           +  G ++ + +    G +  V     +VD++ + G + +A +  +++         W A+
Sbjct: 517 LTLGKQLHSHIIGS-GYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVS--WNAL 573

Query: 384 LGACKMHKNFDLGVEVAEHLL--SVEPEN 410
           + A   + + D  + + E ++   ++P++
Sbjct: 574 ISAYAQNGDGDCTLRLFEEMVRSGLQPDS 602



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 189/396 (47%), Gaps = 34/396 (8%)

Query: 22  KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRN 81
           KP   V A +I  G+  +      L+      G +  A+++F  +P  + F  NT+I+  
Sbjct: 83  KPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGY 142

Query: 82  SKA-NFSTDSLLF---YRRMIVS---------------------------NISPSNYTFS 110
            K+ N S    LF   ++R  V+                            I P + + +
Sbjct: 143 IKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLA 202

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK 170
            ++        +N  R VH HV   GYDS L V  +L++ Y K+ ++ +A ++F+ +P++
Sbjct: 203 TLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPER 262

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH 230
             V +N++++GY + GF +EAI LF  M++ G  P   T   +L A  QL DI+ G+ VH
Sbjct: 263 DSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVH 322

Query: 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
            F+V      NV +A +L++ Y++   V +A ++F  M E++ I++  +++ Y  +G   
Sbjct: 323 GFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVK 382

Query: 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350
           E++ELF  ++  G    N  F  +LS  A +  +  G ++  S       +  +     +
Sbjct: 383 ESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIH-SQTIVTDAISEILVGNSL 441

Query: 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           VD++ + G   EA +   D+  +   P  WTAM+ +
Sbjct: 442 VDMYAKCGEFGEANRIFSDLAIQSSVP--WTAMISS 475



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 120/255 (47%), Gaps = 36/255 (14%)

Query: 112 VIKSCAHLSILNL-GRAVHCHVFVS----GYDSDLHVQAALVNFYAKSNNVDVARKVFDR 166
           +IK C    +  L     H HV  S    G++ + +    LV  + +  +++ ARK+FD 
Sbjct: 67  IIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDE 126

Query: 167 MPDKSV-------------------------------VAWNSMISGYEQNGFAKEAIGLF 195
           MP K++                               V W  +I GY QN   +EA GLF
Sbjct: 127 MPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLF 186

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             M   G++PD  +   +L+   +   ++  R VH  ++  G D  +V++ SL++ Y + 
Sbjct: 187 IEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKT 246

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
            ++  A ++F+ + E + + + A+++GY   G+  EA+ LF +M+  G RP   TF A+L
Sbjct: 247 RSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAIL 306

Query: 316 SACAHAGLVQEGHRV 330
           +A      ++ G +V
Sbjct: 307 TAGIQLDDIEFGQQV 321


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/587 (35%), Positives = 338/587 (57%), Gaps = 14/587 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   +   LKA   L  ++   Q+H   + +G+     +    + +    G I  A++
Sbjct: 102 KPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQ 161

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  +   +N +I  ++       SL+ ++RM      P  +TF++ +K+C  L  
Sbjct: 162 VFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGA 221

Query: 122 LNLGRAVHCHVFVSGYDSDLH--VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
           +  G  +H  +   G+   +   + +A+V+ YAK   +  A+KVFDR+  K++++W+++I
Sbjct: 222 IRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALI 281

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI--VGQG 237
            G+ Q G   EA+ LF  +R+   N D      ++   A L  ++ G+ +H +I  V  G
Sbjct: 282 QGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSG 341

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFH 297
           LD++V  A S+I+MY +CG   +A  +F  M   NV++WT MI+GYG HG G +A+ LF+
Sbjct: 342 LDISV--ANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFN 399

Query: 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
           RM+  G+  + V ++A+LSAC+H+GL++E    F+ +   + + P +EH+ CMVD+ GRA
Sbjct: 400 RMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRA 459

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           G L EA   +++ +  KP   +W  +L AC++H N ++G EV E L  ++ +NP +YVM+
Sbjct: 460 GQLKEAKNLIEN-MKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMM 518

Query: 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL 477
           SNIYA AG     E VR ++  KGLKK  G S VE++++ + F  GD +HP T +I++ L
Sbjct: 519 SNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEML 578

Query: 478 DELMGRCR-EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLM---RTSPGMTIRI 533
            E+  R + E GY      A+H++EEE +E +LR HSEKLA+   L+       G  IR+
Sbjct: 579 KEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKLAIGLALVCDGMEKKGGVIRV 638

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR+C DCH  IK +S    +  +VRD  RFH F+ G CSC DYW
Sbjct: 639 FKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 188/368 (51%), Gaps = 7/368 (1%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           QVHA  +  G+G    M   L+ +      +  A  +F  +   +   +  L+    +  
Sbjct: 25  QVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEG 84

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
            +  SL     M  S + P+ +TFS  +K+C  L ++  G  +H     SG++    V  
Sbjct: 85  NAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGN 144

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           A ++ Y+K   + +A +VF++MP +++V+WN+MI+G+   G  ++++ LF  M+  G  P
Sbjct: 145 ATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVP 204

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV--VLATSLINMYARCGNVSKARE 263
           D  T    L AC  LG I  G  +H  ++ +G  +++  ++A++++++YA+CG + +A++
Sbjct: 205 DEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQK 264

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +FD + + N+I+W+A+I G+   G   EA++LF ++R      +      ++   A   L
Sbjct: 265 VFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLAL 324

Query: 324 VQEGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           V++G ++    ++   GL   V + +  +D++ + GL  EA +   ++  +      WT 
Sbjct: 325 VEQGKQMHCYILKVPSGLDISVANSI--IDMYLKCGLTEEAERLFSEM--QVRNVVSWTV 380

Query: 383 MLGACKMH 390
           M+     H
Sbjct: 381 MITGYGKH 388



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 150/278 (53%), Gaps = 5/278 (1%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
            + ++++C+   + + G  VH      G+  DL +   L++ Y K + VD+A  VFDRM 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           +++VV+W +++ GY Q G AK ++ L   M   GV P+  T    L AC  LG ++ G  
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H   V  G +   V+  + I+MY++CG +  A ++F+ M   N+++W AMI+G+   G 
Sbjct: 127 IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGN 186

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
           G +++ LF RM+  G  P+  TF + L AC   G ++ G ++ AS+    G    + + +
Sbjct: 187 GRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITR-GFPISIRNII 245

Query: 349 --CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
              +VDL+ + G L EA K    +  E+     W+A++
Sbjct: 246 ASAIVDLYAKCGYLFEAQKVFDRI--EQKNLISWSALI 281


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/575 (35%), Positives = 330/575 (57%), Gaps = 5/575 (0%)

Query: 6    PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
            P + ++ ++L +    +  Q +   ++ +GY RS  + T L+S+      +  A+ +F  
Sbjct: 539  PDALSFTSVLSSCYCSQEAQVLRMCILESGY-RSACLETALISMHGRCRELEQARSVFNE 597

Query: 66   IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
            +   D   +  ++   ++     +    +RRM +  + P  +T +  + +C   + L LG
Sbjct: 598  MDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLG 657

Query: 126  RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
            + +H  V   G ++D+ V+ AL+N Y+   +   A   F+ M  + +V+WN M + Y Q 
Sbjct: 658  KVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQA 717

Query: 186  GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
            G AKEA+ LF  M+  GV PD  T    L        +  G+  H      GLD +V +A
Sbjct: 718  GLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVA 777

Query: 246  TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
            T L+ +YA+CG + +A  +F    +  V+   A+I     HG+  EAV++F +M+  GVR
Sbjct: 778  TGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVR 837

Query: 306  PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
            P+  T V+++SAC HAG+V+EG   F +M++ +G+ P +EH+ C VDL GRAG L  A +
Sbjct: 838  PDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQ 897

Query: 366  FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
             ++ +  E     VWT++LG CK+  + +LG   A+ +L ++P N   +V+LSNIY   G
Sbjct: 898  IIRKMPFEDN-TLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATG 956

Query: 426  RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
            +    +V R  M+ + +K   G S  E+ ++ + F  GD+SHP T+EIY  LD+L    R
Sbjct: 957  KWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLELLMR 1016

Query: 486  EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
             AGY  E++  + ++E+E +E +L YHSE++A+AFGL+ T P  T++IVKNLR+C DCH+
Sbjct: 1017 RAGY--EADKGL-DVEDELKEKALGYHSERIAIAFGLIATPPETTLKIVKNLRVCGDCHT 1073

Query: 546  AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            A K+IS+   REIIVRD LRFHHF  G+CSC D W
Sbjct: 1074 ATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 200/404 (49%), Gaps = 17/404 (4%)

Query: 28  HAHLIVAGYGRSRSMLTK--LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           HAH ++A  G  + +     L+++    G +  A  IF  +   +   +  LI  N++  
Sbjct: 46  HAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQCG 105

Query: 86  FSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD----SD 140
               +   +R M++ S+ +P++YT  A++ +CA+   L +GR++H  ++  G +    + 
Sbjct: 106 AFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTA 165

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG-FAKEAIGLFNLMR 199
             V  A++N YAK  +++ A  VF  +P+K VV+W +M   Y Q   F  +A+ +F  M 
Sbjct: 166 TLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREML 225

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
              + P+  T +  L AC  L D   G W+H  +    L  + + + +LINMY +CG+  
Sbjct: 226 LQPLAPNVITFITALGACTSLRD---GTWLHSLLHEASLGFDPLASNALINMYGKCGDWE 282

Query: 260 KAREIFDMMS---ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
            A  +F  M+   EL++++W AMIS     G   +A+ +F R+R  G+RPN+VT + +L+
Sbjct: 283 GAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILN 342

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           A A +G+     R F     E G L  V     ++ ++ + G  + A+   +  I  K  
Sbjct: 343 ALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRR-IRWKCD 401

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLL--SVEPENPGHYVMLS 418
              W  MLGA +  K+F   V    H+L   ++P       +L+
Sbjct: 402 VISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILN 445



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 188/399 (47%), Gaps = 26/399 (6%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLT----KLLSLVCDAGFITY 58
           P+S    A+L A    + L   + +HA +   G  R+ +  T     ++++    G +  
Sbjct: 125 PNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLED 184

Query: 59  AQRIFFCIPSPDSFLFNTLI-IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           A  +F  IP  D   +  +      +  F  D+L  +R M++  ++P+  TF   + +C 
Sbjct: 185 AIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACT 244

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS---VVA 174
            L     G  +H  +  +    D     AL+N Y K  + + A  VF  M  +    +V+
Sbjct: 245 SL---RDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVS 301

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG-DIDLGRWVHEFI 233
           WN+MIS   + G   +A+ +F  +R  G+ P+S T + +L A A  G D    R  H  I
Sbjct: 302 WNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRI 361

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEA 292
              G   +VV+  ++I+MYA+CG  S A  +F  +  + +VI+W  M+          + 
Sbjct: 362 WESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKV 421

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGVEHHVC 349
           V  FH M   G+ PN V+F+A+L+AC+++  +  G   H +  + R++Y     VE  V 
Sbjct: 422 VNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDY-----VESSVA 476

Query: 350 --MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
             +V ++G+ G ++EA    K++     +   W  MLGA
Sbjct: 477 TMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGA 515



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 173/376 (46%), Gaps = 13/376 (3%)

Query: 1   MKNKQPHSPAYEAILKA----GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFI 56
           ++  +P+S     IL A    G      +  H  +  +GY R   +   ++S+    GF 
Sbjct: 327 LEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFF 386

Query: 57  TYAQRIFFCIP-SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           + A  +F  I    D   +NT++  +         +  +  M+++ I P+  +F A++ +
Sbjct: 387 SAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNA 446

Query: 116 CAHLSILNLGRAVHCHVFVSGYD-SDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSV 172
           C++   L+ GR +H  +     D  +  V   LV+ Y K  ++  A  VF  MP   +S+
Sbjct: 447 CSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSL 506

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           V WN M+  Y QN  +KEA G    M   GV PD+ +   VL++C    +  + R     
Sbjct: 507 VTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMC--- 563

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           I+  G   +  L T+LI+M+ RC  + +AR +F+ M   +V++WTAM+S    +    E 
Sbjct: 564 ILESGYR-SACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEV 622

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
             LF RM+  GV P+  T    L  C  +  +  G  + A +  E GL   +     +++
Sbjct: 623 HNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACV-TEIGLEADIAVENALLN 681

Query: 353 LFGRAGLLNEAYKFVK 368
           ++   G   EA  F +
Sbjct: 682 MYSNCGDWREALSFFE 697



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 147/286 (51%), Gaps = 13/286 (4%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           ++A+++SC   + L  G+  H  +  +G +  L +   L+N Y +  +++ A  +F +M 
Sbjct: 28  YTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME 87

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
           +++VV+W ++IS   Q G    A  LF  ++ +    P+S T V +L ACA   D+ +GR
Sbjct: 88  ERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGR 147

Query: 228 WVHEFIVGQGLDVNVVLAT----SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
            +H  I   GL+     AT    ++INMYA+CG++  A  +F  + E +V++WTAM   Y
Sbjct: 148 SIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAY 207

Query: 284 GMH-GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ-EYGLL 341
                +  +A+ +F  M    + PN +TF+  L AC     +++G  + + + +   G  
Sbjct: 208 AQERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTWLHSLLHEASLGFD 264

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV-WTAMLGA 386
           P   +   +++++G+ G    AY   K +   +    V W AM+ A
Sbjct: 265 PLASN--ALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISA 308



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 8/186 (4%)

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
           +L +C    D+  G+  HE I   GL+ ++ L   LINMY RCG++ +A  IF  M E N
Sbjct: 31  LLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERN 90

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           V++WTA+IS     G    A  LF  M       PN+ T VA+L+ACA++  +  G  + 
Sbjct: 91  VVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIH 150

Query: 332 ASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
           A M  E GL             M++++ + G L +A   V   I EK   + WTAM GA 
Sbjct: 151 A-MIWELGLERASTTATLVGNAMINMYAKCGSLEDAIA-VFLAIPEKDVVS-WTAMAGAY 207

Query: 388 KMHKNF 393
              + F
Sbjct: 208 AQERRF 213


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/584 (35%), Positives = 340/584 (58%), Gaps = 16/584 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQV---HAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + +++K+   L+ L  V       + +G+   + ++T L+  +     +  A  
Sbjct: 292 KPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALS 351

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLL-FYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           +F  +    + +  T +I     N   D  +  + +M    + P+++T+SA++    H  
Sbjct: 352 LFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAIL--TVHYP 409

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
           +      +H  V  + Y+    V  AL++ Y K  N   A KVF+ +  K ++AW++M++
Sbjct: 410 VF--VSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLA 467

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ-LGDIDLGRWVHEFIVGQGLD 239
           GY Q G  +EA  LF+ +   G+ P+  T   V+ ACA      + G+  H + +   L+
Sbjct: 468 GYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLN 527

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
             + ++++L+ MYA+ GN+  A E+F    E ++++W +MISGY  HG   +A+E+F  M
Sbjct: 528 NALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEM 587

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359
           +   +  + VTF+ V++AC HAGLV++G + F SM  ++ + P ++H+ CM+DL+ RAG+
Sbjct: 588 QKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGM 647

Query: 360 LNEAYKFVKDVIGEKPAP---AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
           L +A      +I E P P    VW  +LGA ++H+N +LG   AE L+S++PE+   YV+
Sbjct: 648 LEKAM----GIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVL 703

Query: 417 LSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQY 476
           LSN+YA AG       VR +M ++ +KK  GYS +EV  K Y F  GD +HP +N+IY  
Sbjct: 704 LSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSK 763

Query: 477 LDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKN 536
           L EL  R ++AGY P++++  H++E+E++E  L +HSE+LA+AFGL+ T P + I+IVKN
Sbjct: 764 LSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKN 823

Query: 537 LRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           LR+C DCH+  K +S+   R I+VRD  RFHHFK G CSC DYW
Sbjct: 824 LRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 143/263 (54%), Gaps = 2/263 (0%)

Query: 59  AQRIFFCIPSPDSFL--FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC 116
           A  +F  IP   + L   N L+   S+   + ++L  +  ++ S++ P   T S V   C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
           A      LGR VHC     G    + V  +LV+ Y K+ NV+  R+VFD M +++VV+W 
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
           S+++GY  NG       LF  M+  GV P+  T   V+AA    G + +G  VH  +V  
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKH 223

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
           G +  + +  SLI++Y+R G +  AR++FD M   + + W +MI+GY  +G   E  E+F
Sbjct: 224 GFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIF 283

Query: 297 HRMRAHGVRPNNVTFVAVLSACA 319
           ++M+  GV+P ++TF +V+ +CA
Sbjct: 284 NKMQLAGVKPTHMTFASVIKSCA 306



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 180/368 (48%), Gaps = 18/368 (4%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH   +  G     S+ T L+ +      +   +R+F  +   +   + +L+     A
Sbjct: 113 RQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLL-----A 167

Query: 85  NFSTDSLLFYR-----RMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
            +S + L  Y      +M    + P+ YT S VI +  +  ++ +G  VH  V   G++ 
Sbjct: 168 GYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEE 227

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
            + V  +L++ Y++   +  AR VFD+M  +  V WNSMI+GY +NG   E   +FN M+
Sbjct: 228 AIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQ 287

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             GV P   T   V+ +CA L ++ L + +    +  G   + ++ T+L+   ++C  + 
Sbjct: 288 LAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMD 347

Query: 260 KAREIFDMMSE-LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
            A  +F +M E  NV++WTAMISG   +G   +AV LF +MR  GV+PN+ T+ A+L+  
Sbjct: 348 DALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTV- 406

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378
            +   V E H        E     G      ++D + + G   +A K V ++I  K   A
Sbjct: 407 HYPVFVSEMHAEVIKTNYERSSSVG----TALLDAYVKLGNTIDAVK-VFEIIEAKDLMA 461

Query: 379 VWTAMLGA 386
            W+AML  
Sbjct: 462 -WSAMLAG 468



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 152/299 (50%), Gaps = 14/299 (4%)

Query: 159 VARKVFDRMPDK--SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           +A  +FD++P +  ++   N ++  Y ++   KEA+ LF  +    + PD +T  CV   
Sbjct: 43  IAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNI 102

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           CA   D  LGR VH   V  GL  +V + TSL++MY +  NV+  R +FD M E NV++W
Sbjct: 103 CAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSW 162

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           T++++GY  +G      ELF +M+  GV PN  T   V++A  + G+V  G +V A M  
Sbjct: 163 TSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHA-MVV 221

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIG--EKPAPAVWTAMLGACKMHKNFD 394
           ++G    +     ++ L+ R G+L +A    +DV    E      W +M+ A  +    D
Sbjct: 222 KHGFEEAIPVFNSLISLYSRLGMLRDA----RDVFDKMEIRDWVTWNSMI-AGYVRNGQD 276

Query: 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEV 453
           L V    + + +    P H    S I + A  +  + +V+ +M  K LK   G++T ++
Sbjct: 277 LEVFEIFNKMQLAGVKPTHMTFASVIKSCAS-LRELALVK-LMQCKALKS--GFTTDQI 331


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/580 (35%), Positives = 323/580 (55%), Gaps = 5/580 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + A+L A   L      QQVH  ++   +  +  +   LL        +    +
Sbjct: 238 KPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGK 297

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F+ +P  D   +N +I   +      +S   +R++  +      + F+ ++        
Sbjct: 298 LFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLN 357

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L +GR +HC     G + +  V+ ALV+ YAK N    A+K+FD +  KS V W +MIS 
Sbjct: 358 LRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISA 417

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q G  +E I +F+ MR  GV  D  T   +L ACA L  I LGR +H  ++  G   N
Sbjct: 418 YVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSN 477

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V   ++L++ YA+CG ++ A + F  M E N ++W A+IS Y  +G     +  F +M  
Sbjct: 478 VYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQ 537

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G +P++V+F++VLSAC+H G V+E    F SM Q Y + P  EH+  MVD+  R G  +
Sbjct: 538 SGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFD 597

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP-ENPGHYVMLSNI 420
           EA K + ++  E P+  +W+++L +C++HKN +L  + A+ L ++E   +   Y+ +SNI
Sbjct: 598 EAEKLMTEMPFE-PSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNI 656

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA+AG+ D V  V+  M  +G++K   YS VE+  + ++FS  DKSHP   +I + ++ L
Sbjct: 657 YAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINAL 716

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
                + GY P++  A+H+++E  +  SL+YHSE+ A+AF LM T  G  I ++KNLR C
Sbjct: 717 SKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRAC 776

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH+AIK IS    REIIVRD  RFHHFK G CSC DYW
Sbjct: 777 TDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 182/371 (49%), Gaps = 7/371 (1%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           Q+H H+I  GY  +  +   L+   C    +  A ++F  + + D+  FN+L+   S   
Sbjct: 161 QIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEG 220

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
            + +++  +  +  S I PS++TF+A++ +   L     G+ VH  V  + +  ++ V  
Sbjct: 221 LNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGN 280

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           AL+++Y+K + VD   K+F  MP+   +++N +I+ Y  NG  KE+  LF  ++    + 
Sbjct: 281 ALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDR 340

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
                  +L+      ++ +GR +H   +  G +    +  +L++MYA+C    +A++IF
Sbjct: 341 RQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIF 400

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D ++  + + WTAMIS Y   G   E + +F  MR  GV  +  TF ++L ACA+   + 
Sbjct: 401 DNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASIS 460

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA--PAVWTAM 383
            G R   S+    G +  V     ++D + + G + +A K      GE P      W A+
Sbjct: 461 LG-RQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIK----SFGEMPERNSVSWNAL 515

Query: 384 LGACKMHKNFD 394
           + A   + N D
Sbjct: 516 ISAYAQNGNVD 526



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 174/376 (46%), Gaps = 8/376 (2%)

Query: 27  VHAHLIVAGYGRSRSM-LTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           VHAH +        ++ L  ++S     G ++ A+ +F  +    +  +  LI    ++N
Sbjct: 60  VHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSN 119

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
            S ++   Y  M    I P   T   ++     L   N+   +H HV   GY+ +L V  
Sbjct: 120 QSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCN 179

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           +LV+ Y K++ + +A ++F  M +K  V +NS+++GY   G  +EAI LF  + + G+ P
Sbjct: 180 SLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKP 239

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
              T   +L+A   L D   G+ VH F++      NV +  +L++ Y++   V +  ++F
Sbjct: 240 SDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLF 299

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
             M EL+ I++  +I+ Y  +G   E+ +LF +++          F  +LS    +  ++
Sbjct: 300 YEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLR 359

Query: 326 EGHRVFASMRQEYGLLPGVEHHV--CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
            G ++     Q   +    E  V   +VD++ +     EA K   ++  +   P  WTAM
Sbjct: 360 MGRQIHC---QAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVP--WTAM 414

Query: 384 LGACKMHKNFDLGVEV 399
           + A       + G+ V
Sbjct: 415 ISAYVQKGKHEEGINV 430



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 113/240 (47%), Gaps = 31/240 (12%)

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP------------- 168
           LN    +  H+  +G++ +       VN + +  ++  A +VFD+MP             
Sbjct: 24  LNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISG 83

Query: 169 ------------------DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
                             +++ V+W  +I GY Q+  +KEA  L+  MR  G+ PD  T 
Sbjct: 84  HLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTL 143

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           V +L+   +L   ++   +H  ++  G + N+++  SL++ Y +   +  A ++F  M  
Sbjct: 144 VTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLN 203

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            + + + ++++GY   G   EA+ELF  +   G++P++ TF A+LSA       + G +V
Sbjct: 204 KDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQV 263


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/554 (35%), Positives = 324/554 (58%), Gaps = 2/554 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH + +  G+    S+   LL +  +        +IF  +   +   +  +I   ++A  
Sbjct: 319 VHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGL 378

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
                  ++ M +    P  +  ++ + + A   +L  G++VH +   +G +  L V  A
Sbjct: 379 YDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNA 438

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L+  Y K  N++ A+ +FD +  K +++WN++I GY +N  A EA  LF  M    + P+
Sbjct: 439 LMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEML-LQLRPN 497

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
           + T  C+L A A L  ++ GR +H + + +G   +  +A +LI+MY +CG +  AR +FD
Sbjct: 498 AVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFD 557

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            +S  N+I+WT M++GYGMHG G +A+ LF +MR  G+ P+  +F A+L AC+H+GL  E
Sbjct: 558 RLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDE 617

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G R F +MR+E+ + P ++H+ CMVDL    G L EAY+F+ D +  +P  ++W ++L  
Sbjct: 618 GWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFI-DSMPIEPDSSIWVSLLRG 676

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C++H+N  L  EVAE +  +EPEN G+YV+L+NIYA A R + V  ++N +  +GL+++ 
Sbjct: 677 CRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENT 736

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
           G S +E   K ++F   +++HP    I ++L+E+  R +E G+ P+ + A+   +     
Sbjct: 737 GCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKYALMGADNAVHG 796

Query: 507 YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
            +L  HS KLA+AFG++  S G  IR+ KN R+C  CH A KFIS   +REII+RD  RF
Sbjct: 797 EALCGHSSKLAVAFGVLNLSEGRLIRVTKNSRVCSHCHEAAKFISKMCSREIILRDSNRF 856

Query: 567 HHFKRGSCSCLDYW 580
           HHF++G CSC  YW
Sbjct: 857 HHFEQGRCSCRGYW 870



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 188/388 (48%), Gaps = 18/388 (4%)

Query: 10  AYEAILKAGPRLKPLQQ-VHAHLIVAGYGRSRSML-----TKLLSLVCDAGFITYAQRIF 63
           +Y A+L+    ++ L+    AH +V      R  +      KL+ +    G +  A+R+F
Sbjct: 93  SYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVF 152

Query: 64  FCIPS-PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
             +P   D  ++  L+   +KA    + +L +R+M    + P  YT S V+K  A L  +
Sbjct: 153 DEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSI 212

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G  VH  +   G+ S   V  AL+ FYAKSN    A  VFD MP + V++WNSMISG 
Sbjct: 213 EDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGC 272

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
             NG   +AI LF  M   G   DS T + VL ACA+L  + LGR VH + V  G     
Sbjct: 273 TSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQT 332

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            LA  L++MY+ C +     +IF  M + NV++WTAMI+ Y   G   +   LF  M   
Sbjct: 333 SLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLE 392

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAG 358
           G RP+     + L A A   L++ G  V       Y +  G+E  +     +++++ + G
Sbjct: 393 GTRPDIFAITSALHAFAGNELLKHGKSVHG-----YAIRNGMEKVLAVTNALMEMYVKCG 447

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
            + EA K + D +  K   + W  ++G 
Sbjct: 448 NMEEA-KLIFDGVVSKDMIS-WNTLIGG 473



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 182/390 (46%), Gaps = 9/390 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P +     +LK    L  ++    VH  L   G+G   ++   L++    +     A  
Sbjct: 193 RPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAIL 252

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  D   +N++I   +       ++  + RM +      + T  +V+ +CA L +
Sbjct: 253 VFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHL 312

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L LGR VH +   +G+ S   +   L++ Y+  ++     K+F  M  K+VV+W +MI+ 
Sbjct: 313 LFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITS 372

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y + G   +  GLF  M   G  PD       L A A    +  G+ VH + +  G++  
Sbjct: 373 YTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKV 432

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + +  +L+ MY +CGN+ +A+ IFD +   ++I+W  +I GY  +    EA  LF  M  
Sbjct: 433 LAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLL 492

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             +RPN VT   +L A A    ++ G  + A ++R+ Y     V +   ++D++ + G L
Sbjct: 493 Q-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVAN--ALIDMYVKCGAL 549

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
             A +   D +  K   + WT M+    MH
Sbjct: 550 LLARRLF-DRLSNKNLIS-WTIMVAGYGMH 577



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 106/246 (43%), Gaps = 12/246 (4%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P++     IL A   L  L+   ++HA+ +  GY     +   L+ +    G +  A+R
Sbjct: 495 RPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARR 554

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  + + +   +  ++          D++  + +M VS I+P   +FSA++ +C+H  +
Sbjct: 555 LFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGL 614

Query: 122 LNLG-RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM---PDKSVVAWNS 177
            + G R           +  L     +V+    + N+  A +  D M   PD S+  W S
Sbjct: 615 RDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSI--WVS 672

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC-AQLGDIDLGRWVHEFIVGQ 236
           ++ G   +   K A  +    R F + P++T    +LA   A+    +  R +   I G+
Sbjct: 673 LLRGCRIHRNVKLAEEVAE--RVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGR 730

Query: 237 GLDVNV 242
           GL  N 
Sbjct: 731 GLRENT 736


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/609 (35%), Positives = 343/609 (56%), Gaps = 36/609 (5%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+S     ++ A  +L+ L+   +V+  +  +G   +  M++ L+ +      I  A+R+
Sbjct: 233 PNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRL 292

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F    + +  L N +     +   + ++L     M+ S I P   +  + I SC+ L  +
Sbjct: 293 FDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNI 352

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
             G++ H +V  +G++S  ++  AL++ Y K +  D A ++FDRM +K+VV WNS+++GY
Sbjct: 353 LWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGY 412

Query: 183 EQNGFAKEAIGLFNLMRDFG--------------------------------VNPDSTTC 210
            +NG    A   FN M +                                  VN D  T 
Sbjct: 413 IENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTM 472

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           + + +AC  LG +DL +W++ +I    + ++V L T+L++M++RCG+   A  IF+ ++ 
Sbjct: 473 MSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTN 532

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            +V AWTA I    M G    A+ELF+ M   G++P+ V F+  L+AC H GLVQ+G  +
Sbjct: 533 RDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEI 592

Query: 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           F SM + +G+ P   H+ CMVDL GRAGLL EA + +KD+  E P   +W ++L AC++ 
Sbjct: 593 FNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTE-PNDVIWNSLLAACRVQ 651

Query: 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450
            N ++    AE +  + PE  G YV+LSN+YA AGR + +  VR  M +KGL+K  G S 
Sbjct: 652 GNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSV 711

Query: 451 VEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLR 510
           +++  K + F+ GD+SHP   +I   LDEL  R  + G+VP+  + + +++E+E+ + L 
Sbjct: 712 IQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLS 771

Query: 511 YHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
            HSEKLA+AFGL+ ++ G TIRIVKNLR+C  CHS  KF S   NREII+RD  RFH  +
Sbjct: 772 RHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIR 831

Query: 571 RGSCSCLDY 579
           +G CSC D+
Sbjct: 832 QGKCSCSDF 840



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 184/325 (56%), Gaps = 5/325 (1%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF---IT 57
           + N+   + A  + LK    +  L+  H  L   G     S +TKL++  C+ G    ++
Sbjct: 24  LPNQSKRTKATPSSLKNCKTIDELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLS 83

Query: 58  YAQRIFFCIPSPDS-FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC 116
           +A+ +F    S  + F++N+LI   + +    +++L + RM+ S ISP  YTF   +  C
Sbjct: 84  FAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVC 143

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
           A       G  +H  +    Y  DL VQ +LV+FYA+   +D ARKVFD M +++VV+W 
Sbjct: 144 AKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWT 203

Query: 177 SMISGYEQNGFAKEAIGL-FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           SMI GY +  FAK+A+ L F ++RD  V P+S T VCV++ACA+L D++ G  V++FI  
Sbjct: 204 SMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRD 263

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
            G++VN ++ ++L++MY +C  +  A+ +FD     N+    AM S Y   G   EA+ +
Sbjct: 264 SGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGV 323

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAH 320
            + M   G+RP+ ++ ++ +S+C+ 
Sbjct: 324 LNLMMDSGIRPDRISMLSAISSCSQ 348



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 195/412 (47%), Gaps = 36/412 (8%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           Q+H  +I   Y +   +   L+    + G +  A+++F  +   +   + ++I   ++  
Sbjct: 154 QIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARRE 213

Query: 86  FSTDSL-LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
           F+ D++ LF+R +   ++ P++ T   VI +CA L  L  G  V+  +  SG + +  + 
Sbjct: 214 FAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMI 273

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           +ALV+ Y K N +D+A+++FD     ++   N+M S Y + G  KEA+G+ NLM D G+ 
Sbjct: 274 SALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIR 333

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC--------- 255
           PD  + +  +++C+QL +I  G+  H +++  G +    +  +LI+MY +C         
Sbjct: 334 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 393

Query: 256 ----------------------GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
                                 G V  A E F+ M E N+++W  +IS         EA+
Sbjct: 394 FDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAI 453

Query: 294 ELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
           E+FH M++   V  + VT +++ SAC H G +     ++  + +    L  V     +VD
Sbjct: 454 EVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLD-VRLGTTLVD 512

Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           +F R G    A      +       + WTA +GA  M  N +  +E+   ++
Sbjct: 513 MFSRCGDPESAMSIFNSLTNRD--VSAWTAAIGAMAMAGNVERAIELFNEMI 562



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 14/246 (5%)

Query: 99  VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS---- 154
           + N S       + +K+C  +  L +    H  +   G D D+   +A+    A+S    
Sbjct: 24  LPNQSKRTKATPSSLKNCKTIDELKM---FHLSLTKQGLDDDV---SAITKLVARSCELG 77

Query: 155 --NNVDVARKVFDRMPD-KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
              ++  A++VF+      +   +NS+I GY  +G  KEAI LF  M + G++PD  T  
Sbjct: 78  TRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFP 137

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
             L+ CA+  D   G  +H  I+      ++ +  SL++ YA CG +  AR++FD MSE 
Sbjct: 138 FGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSER 197

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
           NV++WT+MI GY    +  +AV+LF RM R   V PN+VT V V+SACA    ++ G +V
Sbjct: 198 NVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKV 257

Query: 331 FASMRQ 336
           +  +R 
Sbjct: 258 YDFIRD 263


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/424 (45%), Positives = 273/424 (64%), Gaps = 1/424 (0%)

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           VD AR+VFD MP +++V+WNSMISGY +     +A+ +F+ MR  GV  +       L A
Sbjct: 180 VDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVA 239

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C   G +  GR ++ ++   G++V+  LAT++++MY +CG V +A  +FD +    +  W
Sbjct: 240 CTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWGVFDSLPARGLTTW 299

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
             MI G+ +HG   +A+ELFH+M A GV P++VT + VL+ACAHAG V EG R    +  
Sbjct: 300 NCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVS 359

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
            +G+ P  EH+ CMVDLFGRAG L+EA K + D +   P  AV  A+LGACK+H + DLG
Sbjct: 360 RHGIEPKGEHYGCMVDLFGRAGQLDEAKKVI-DEMPMDPDLAVLGALLGACKIHGDVDLG 418

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQK 456
             +   ++ ++P+N G YV+L+N+ A AGR D V  VR +M ++ + K  G S +EVD +
Sbjct: 419 EAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDERNVSKEAGRSVIEVDGE 478

Query: 457 NYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKL 516
              F  G+  HP   EIY    +++ R R  GYVP++  A+H++ EE++E +L  HSEKL
Sbjct: 479 ACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKEAALLCHSEKL 538

Query: 517 ALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSC 576
           A+AFGL+R  P  T+RI KNLR+C DCH A K++S    REI+VRDR RFHHFK G CSC
Sbjct: 539 AIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVVRDRSRFHHFKDGMCSC 598

Query: 577 LDYW 580
            DYW
Sbjct: 599 KDYW 602


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/559 (37%), Positives = 330/559 (59%), Gaps = 4/559 (0%)

Query: 5   QPHSPAYEAILKAG---PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+  A  ++LKA    P +   + +H   I         +   LL +    G I  A+ 
Sbjct: 260 KPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARL 319

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            F  IP  D  L + +I R +++N +  +   + R++ S++ P+ Y+ S+V+++C ++  
Sbjct: 320 AFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQ 379

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L+ G+ +H H    G++SDL V  AL++FYAK N++D + K+F  + D + V+WN+++ G
Sbjct: 380 LDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVG 439

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + Q+G  +EA+ +F  M+   +     T   VL ACA    I     +H  I     + +
Sbjct: 440 FSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNND 499

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            V+  SLI+ YA+CG +  A ++F  + E ++I+W A+ISGY +HG   +A+ELF RM  
Sbjct: 500 TVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNK 559

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             V  N++TFVA+LS C+  GLV  G  +F SMR ++G+ P +EH+ C+V L GRAG LN
Sbjct: 560 SNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLN 619

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           +A +F+ D I   P+  VW A+L +C +HKN  LG   AE +L +EP++   YV+LSN+Y
Sbjct: 620 DALQFIGD-IPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMY 678

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A AG +D+V ++R  M   G++K  G S VE+  + + FS+G   HP+   I   L+ L 
Sbjct: 679 AAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLN 738

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            +    GY+P+    +H++++E++   L  HSE+LALA+GL+ T PG  IRI+KNLR C+
Sbjct: 739 LKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCL 798

Query: 542 DCHSAIKFISVATNREIIV 560
           DCH+A   IS    REIIV
Sbjct: 799 DCHTAFTVISKIVKREIIV 817



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 172/350 (49%), Gaps = 19/350 (5%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           L SLV DA      + +F  I   D+ ++  ++   S+ +   ++   + +M VS   P+
Sbjct: 209 LCSLVSDA------EHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPN 262

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            +  ++V+K+   L  + LG+ +H     +  D++ HV  AL++ YAK  ++  AR  F+
Sbjct: 263 PFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFE 322

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            +P   V+  + MIS Y Q+   ++A  LF  +    V P+  +   VL AC  +  +D 
Sbjct: 323 MIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDF 382

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ +H   +  G + ++ +  +L++ YA+C ++  + +IF  + + N ++W  ++ G+  
Sbjct: 383 GKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQ 442

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
            G G EA+ +F  M+A  +    VT+ +VL ACA    ++   ++  S+ +       V 
Sbjct: 443 SGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVI 502

Query: 346 HHVCMVDLFGRAGLLNEAYKFV-----KDVIGEKPAPAVWTAMLGACKMH 390
            +  ++D + + G + +A K       +D+I        W A++    +H
Sbjct: 503 GN-SLIDTYAKCGYIRDALKVFQHLMERDIIS-------WNAIISGYALH 544



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 147/309 (47%), Gaps = 4/309 (1%)

Query: 25  QQVHAHLIV-AGYGRSRSMLTK-LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNS 82
           + VH H++   G GR        LL++    G +  A+R+F  +P  +   F TL+  ++
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHA 138

Query: 83  -KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
            + +F   + LF RR+       + +  + ++K    +    L   VH   +  G+D + 
Sbjct: 139 QRGDFEAAAALF-RRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNA 197

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V + L++ Y+  + V  A  VF+ +  K  V W +M+S Y +N   + A  +F+ MR  
Sbjct: 198 FVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVS 257

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G  P+      VL A   L  + LG+ +H   +    D    +  +L++MYA+CG++  A
Sbjct: 258 GCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDA 317

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           R  F+M+   +VI  + MIS Y       +A ELF R+    V PN  +  +VL AC + 
Sbjct: 318 RLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNM 377

Query: 322 GLVQEGHRV 330
             +  G ++
Sbjct: 378 VQLDFGKQI 386


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/468 (42%), Positives = 296/468 (63%), Gaps = 8/468 (1%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCH---VFVSGYDSDLHVQAALVNFYAKSNNVDVA--RK 162
           +++A+I   AH  +   GRA+      V +     D    A+++    K+   D+A  + 
Sbjct: 25  SWNAMISGFAHAGLF--GRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKG 82

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           VFD M    +++WN+M++ Y  N    EA+ LF  M+  G+ PD+ T   VL +C ++  
Sbjct: 83  VFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSA 142

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           + LG+ +HE I  + +  +++L  +L++MYA CG + +AR++FD M   +V++WT++IS 
Sbjct: 143 LSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISA 202

Query: 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
           YG HG+G EA++LF +M   G+ P+++ FVA+L+AC+HAGL+  G   F SM  E+ + P
Sbjct: 203 YGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAP 262

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
            +EH+ CMVDL GRAG + EAY F+  V+  KP   VW A+LGAC++H N D+G+  A+ 
Sbjct: 263 KLEHYACMVDLLGRAGCIREAYDFIM-VMPIKPNERVWGALLGACRIHSNMDIGLLAADS 321

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSM 462
           LL + P+  G+YV+LSNIYA AGR   V +VR++M  KG+KK  G S  E+    + F +
Sbjct: 322 LLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDSVHTFHI 381

Query: 463 GDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGL 522
           GD SHP +  IY+ L EL+ R RE GY PE E+ +H++EEE++E  L  HSEKLA+AF L
Sbjct: 382 GDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLL 441

Query: 523 MRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
           + T+PG  IRI  NLR C DCH A K IS    REII++D  R H+ K
Sbjct: 442 INTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 489



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 28/275 (10%)

Query: 36  YGRSRSMLTKLLSLVC---DAGFIT---------YAQRIFFCIPSPDSFLFNTLIIRNSK 83
           +GR+  +  +L++L C   DAG +            + I       D   F  LI  N+ 
Sbjct: 39  FGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFTGLISWNAM 98

Query: 84  ANFSTDSLL------FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
               T++ +       + RM    I P   T + V+ SC  +S L+LG+ +H  +     
Sbjct: 99  LAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRM 158

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
            S + ++ AL++ YA    +  AR VFD M  + VV+W S+IS Y ++G  +EAI LF  
Sbjct: 159 CSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEK 218

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGR-----WVHEFIVGQGLDVNVVLATSLINMY 252
           M   G+ PDS   V +LAAC+  G +D+G+        EF +   L+        ++++ 
Sbjct: 219 MCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLE----HYACMVDLL 274

Query: 253 ARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
            R G + +A +   +M  + N   W A++    +H
Sbjct: 275 GRAGCIREAYDFIMVMPIKPNERVWGALLGACRIH 309



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA-HGVRPNNV 309
           MYARCG    A ++F+ M   +V++W AMISG+   G    A+++F  + A    +P+  
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 310 TFVAVLSACAHA 321
           T  ++L +   A
Sbjct: 61  TMASILPSMGKA 72


>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
          Length = 613

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/534 (36%), Positives = 303/534 (56%), Gaps = 8/534 (1%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLI-----IRNSKANFSTDSLLFYRRMIVSNISPSNYT 108
           G + YA  IF  +  P++F +NTL+                +L  +  M+   + P +YT
Sbjct: 81  GSMAYAASIFAALDDPEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYT 140

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           F  V K+CA L  L  GR +  H+   G+  D H Q +L++FY K    D+AR+ F++M 
Sbjct: 141 FPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQME 200

Query: 169 D--KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
           D  ++  +W+++++ Y + G   E +  F  M   G  PD ++ V  L+ACA LG  D+G
Sbjct: 201 DDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVG 260

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
           R +H  ++     +N  ++TSL++MYA+CG +  A  +FD M + N   ++AM+SG  +H
Sbjct: 261 RSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALH 320

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
           G G +A+E+F  M   G RP+   +V VL+AC+ AGL++EG R F  MR E+ L P  +H
Sbjct: 321 GDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQH 380

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406
           + CMVDL  RAG L++A   + + +   P    W ++L AC++H N +L     + L  +
Sbjct: 381 YGCMVDLMARAGRLDDARALIGN-MPTGPTDTAWRSLLNACRIHGNLELAERALQELERL 439

Query: 407 EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKS 466
              N G Y++LS+++A A   D     R   + +GL +  GYS VEV    + F   D+S
Sbjct: 440 GATNAGDYIILSDMHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRS 499

Query: 467 HPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTS 526
           HP  ++IY+ L ++  + R  GY P++     +  EEE+   +  HS+KLA+AFGL+ T 
Sbjct: 500 HPRADDIYEMLHQMEWQLRFEGYTPDTSELALDAGEEEKRRVVAAHSQKLAMAFGLLSTP 559

Query: 527 PGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            G  +R+V NLRM  +CH+    IS    REI+VRDR RFH FKRG+CSC +YW
Sbjct: 560 EGAPVRVVTNLRMSKECHAYSALISEIFGREIVVRDRNRFHRFKRGACSCGNYW 613


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/558 (37%), Positives = 316/558 (56%), Gaps = 3/558 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H  ++ A       +   L+ +    GF+  A+++F  +P  D  L+N LI   S  
Sbjct: 326 RQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHD 385

Query: 85  NFSTDSLLFYRRMIVS--NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
               + L  + RM     ++  +  T ++V+KS A    +   R VH      G  SD H
Sbjct: 386 GRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSH 445

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           V   L++ Y K   +D A KVF       +++  +M++   Q    ++AI LF  M   G
Sbjct: 446 VINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKG 505

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           + PDS     +L AC  L   + G+ VH  ++ +    +V    +L+  YA+CG++  A 
Sbjct: 506 LEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDAD 565

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
             F  + E  +++W+AMI G   HG+G  A++LFHRM   GV PN++T  +VLSAC HAG
Sbjct: 566 MAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAG 625

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           LV +  + F SM++ +G+    EH+ CM+D+ GRAG L +A + V ++  +  A AVW A
Sbjct: 626 LVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANA-AVWGA 684

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LGA ++H++ +LG   AE L ++EPE  G +V+L+N YA AG  D +  VR +M    +
Sbjct: 685 LLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNV 744

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
           KK    S VE+  K + F +GDKSHP T +IY  L EL     +AGYVP  E  +H+++ 
Sbjct: 745 KKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDR 804

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
            E+E  L +HSE+LA+AF L+ T  G  IR+ KNLR+C DCH A K+IS   +REII+RD
Sbjct: 805 SEKELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRD 864

Query: 563 RLRFHHFKRGSCSCLDYW 580
             RFHHF  G+CSC DYW
Sbjct: 865 INRFHHFTNGTCSCGDYW 882



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 210/436 (48%), Gaps = 44/436 (10%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF----FC 65
           A   +LK  P ++   QVHA  +         +   L+++    G +  A+R+F      
Sbjct: 105 ALPVVLKCAPDVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGV 164

Query: 66  IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
               ++  +NT+I    K + S D++  +R M+ S   P+ + FS V+ +C     L  G
Sbjct: 165 GGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAG 224

Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
           R VH  V  +GY+ D+    ALV+ Y+K  ++++A  VF++MP   VV+WN+ ISG   +
Sbjct: 225 RQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTH 284

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G    A+ L   M+  G+ P+  T   VL ACA  G  +LGR +H F+V    D +  +A
Sbjct: 285 GHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVA 344

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-- 303
             L++MYA+ G +  AR++FD M   ++I W A+ISG    G   E + LFHRMR  G  
Sbjct: 345 VGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLD 404

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLN 361
           +  N  T  +VL + A +  +    +V A + ++ GLL   + HV   ++D + + G L+
Sbjct: 405 LDVNRTTLASVLKSTASSEAICHTRQVHA-LAEKIGLLS--DSHVINGLIDSYWKCGQLD 461

Query: 362 EAYKFVK-----DVI----------------------------GEKPAPAVWTAMLGACK 388
            A K  K     D+I                            G +P   V +++L AC 
Sbjct: 462 YAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACT 521

Query: 389 MHKNFDLGVEVAEHLL 404
               ++ G +V  HL+
Sbjct: 522 SLSAYEQGKQVHAHLI 537



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 183/366 (50%), Gaps = 12/366 (3%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
            +H+HL+ +G     S    LL+L       + A+ +F  IP P    +++L+   S   
Sbjct: 25  HLHSHLLKSGLLAGFS--NHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNG 82

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
              D+LL +R M    +  + +    V+K CA    +  G  VH     +    D+ V  
Sbjct: 83  MPRDALLAFRAMRGRGVPCNEFALPVVLK-CA--PDVRFGAQVHALAVATRLVHDVFVAN 139

Query: 146 ALVNFYAKSNNVDVARKVFDRM----PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
           ALV  Y     VD AR++FD       +++ V+WN+MIS Y +N  + +AIG+F  M   
Sbjct: 140 ALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWS 199

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G  P+     CV+ AC    D++ GR VH  +V  G + +V  A +L++MY++ G++  A
Sbjct: 200 GERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMA 259

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
             +F+ M   +V++W A ISG   HG+   A+EL  +M++ G+ PN  T  +VL ACA A
Sbjct: 260 ATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGA 319

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
           G    G ++   M +           V +VD++ + G L++A K V D +  +    +W 
Sbjct: 320 GAFNLGRQIHGFMVKAVADFDEFV-AVGLVDMYAKHGFLDDARK-VFDFMPRRDL-ILWN 376

Query: 382 AMLGAC 387
           A++  C
Sbjct: 377 ALISGC 382



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 145/315 (46%), Gaps = 33/315 (10%)

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G  +H H+  SG  +       L+  Y++      AR VFD +PD   V+W+S+++ Y  
Sbjct: 23  GAHLHSHLLKSGLLAGFSNH--LLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSN 80

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           NG  ++A+  F  MR  GV P +   + V+  CA   D+  G  VH   V   L  +V +
Sbjct: 81  NGMPRDALLAFRAMRGRGV-PCNEFALPVVLKCAP--DVRFGAQVHALAVATRLVHDVFV 137

Query: 245 ATSLINMYARCGNVSKAREIFD----MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           A +L+ +Y   G V +AR +FD    +  E N ++W  MIS Y  +    +A+ +F  M 
Sbjct: 138 ANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMV 197

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL--PGVEHHV----CMVDLF 354
             G RPN   F  V++AC        G R   + RQ +G +   G E  V     +VD++
Sbjct: 198 WSGERPNEFGFSCVVNACT-------GSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMY 250

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLSVEPEN-- 410
            + G +  A      V  + PA  V  W A +  C  H +    +E+   LL ++     
Sbjct: 251 SKLGDIEMA----ATVFEKMPAADVVSWNAFISGCVTHGHDHRALEL---LLQMKSSGLV 303

Query: 411 PGHYVMLSNIYALAG 425
           P  + + S + A AG
Sbjct: 304 PNVFTLSSVLKACAG 318


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/530 (39%), Positives = 325/530 (61%), Gaps = 16/530 (3%)

Query: 56  ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLL-FYRRMIVSNISPSNYTFSAVIK 114
           + +A+++F  +P  +   +  LI    ++    ++++  +R M+  +I P++ T+S ++K
Sbjct: 300 MEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLK 359

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           +CA+LS  + GR +H HV  +       V  ALV+ YA+S  ++ ARK FD++ + ++++
Sbjct: 360 ACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILS 419

Query: 175 WNSMISGYEQNGFAKEAI-GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233
            +  +     N      I G+     D GV+  + T   +L+A A +G +  G+ +H   
Sbjct: 420 MSPDVETERNNASCSSKIEGM-----DDGVS--TFTFASLLSAAASVGLLTKGQKLHALS 472

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  G   +  ++ SL++MYARCG +  A   FD M + NVI+WT++ISG   HGY  +A+
Sbjct: 473 MKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQAL 532

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
            +FH M   GV+PN+VT++AVLSAC+H GLV+EG   F SM++++GLLP +EH+ C+VDL
Sbjct: 533 SMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDL 592

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410
             R+GL+ EA +F    I E P  A   VW  +L AC+ + N ++G   A H++++EP +
Sbjct: 593 LARSGLVEEARQF----INEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRD 648

Query: 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNT 470
           P  YV+LSN+YA AG  D V  +R++M  K L K  G S ++V    + F  GD SHP  
Sbjct: 649 PAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLA 708

Query: 471 NEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT 530
            +IY  L  L+   ++ GYVP++   +H++ EE +E  L  HSEK+A+AFGL+ TS    
Sbjct: 709 IDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEELKEQYLLQHSEKIAVAFGLITTSATKP 768

Query: 531 IRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +RI KNLR+C DCHSAIK+IS +T REII+RD  RFH  K G CSC +YW
Sbjct: 769 MRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGICSCGEYW 818



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 177/360 (49%), Gaps = 15/360 (4%)

Query: 36  YGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYR 95
           +G   S+   L+ +    G +  AQR+F  +    S ++  LI R  +A  ++  +  + 
Sbjct: 176 WGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFL 235

Query: 96  RMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK-- 153
            M+     P  Y+ S++I +C  L  + LG+ +H      G  SD  V   LV+ YAK  
Sbjct: 236 HMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLK 295

Query: 154 -SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI-GLFNLMRDFGVNPDSTTCV 211
              +++ ARKVF  MP  +V++W ++ISGY Q+G  +  +  LF  M +  + P+  T  
Sbjct: 296 MERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYS 355

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
            +L ACA L D D GR +H  ++   +    V+  +L++MYA  G + +AR+ FD + E 
Sbjct: 356 NLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYET 415

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           N+++ +  +     +   +  +E        GV  +  TF ++LSA A  GL+ +G ++ 
Sbjct: 416 NILSMSPDVETERNNASCSSKIEGMD----DGV--STFTFASLLSAAASVGLLTKGQKLH 469

Query: 332 A-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           A SM+  +    G+ +   +V ++ R G L +A +   ++         WT+++     H
Sbjct: 470 ALSMKAGFRSDQGISNS--LVSMYARCGYLEDACRAFDEMKDHNVIS--WTSIISGLAKH 525



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 143/273 (52%), Gaps = 17/273 (6%)

Query: 104 PSNYTFSAVIKSCAHLSILNL-GRAVHCHVFVSGY-DSDLHVQAALVNFYAKSNNVDVAR 161
           P+ +T  A  ++C    +  L G  V   V  +G+  +D+ V  AL++ +A++ ++  A+
Sbjct: 141 PNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQ 200

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           +VFD + +++ V W  +I+ Y Q G A + + LF  M D G  PD  +   +++AC +LG
Sbjct: 201 RVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELG 260

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG---NVSKAREIFDMMSELNVIAWTA 278
            + LG+ +H   +  GL  +  ++  L++MYA+     ++  AR++F  M   NV++WTA
Sbjct: 261 SVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTA 320

Query: 279 MISGYGMHGYGTEAV-ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           +ISGY   G     V  LF  M    +RPN++T+  +L ACA+      G ++ A     
Sbjct: 321 LISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAH---- 376

Query: 338 YGLLPGVEHHV-----CMVDLFGRAGLLNEAYK 365
             +L     HV      +V ++  +G + EA K
Sbjct: 377 --VLKTSIAHVNVVGNALVSMYAESGCMEEARK 407



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 168/338 (49%), Gaps = 12/338 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+   Y  +LKA   L      +Q+HAH++         +   L+S+  ++G +  A++
Sbjct: 348 RPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARK 407

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            F  +   +  L  +  +   + N S  S     ++   +   S +TF++++ + A + +
Sbjct: 408 AFDQLYETN-ILSMSPDVETERNNASCSS-----KIEGMDDGVSTFTFASLLSAAASVGL 461

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +H     +G+ SD  +  +LV+ YA+   ++ A + FD M D +V++W S+ISG
Sbjct: 462 LTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISG 521

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW-VHEFIVGQGLDV 240
             ++G+AK+A+ +F+ M   GV P+  T + VL+AC+ +G +  G+          GL  
Sbjct: 522 LAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLP 581

Query: 241 NVVLATSLINMYARCGNVSKARE-IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            +     ++++ AR G V +AR+ I +M  + + + W  ++S    +G  TE  E+    
Sbjct: 582 RMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYG-NTEIGEIAANH 640

Query: 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
             +    +   +V + +  A AGL  E  R+ + MR +
Sbjct: 641 VINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDK 678



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 141/279 (50%), Gaps = 8/279 (2%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSG-YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD- 169
           ++ S A    L LGRA+H  +  S   D+D  V  +L+  Y+K   V+ AR+VFD+M   
Sbjct: 46  LLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGV 105

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL-GRW 228
           + +V+W +M S   +NG  +E++ L   M + G+ P++ T      AC       L G  
Sbjct: 106 RDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGV 165

Query: 229 VHEFIVGQGL-DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
           V  F++  G    +V +  +LI+M+AR G++  A+ +FD + E   + WT +I+ Y   G
Sbjct: 166 VLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAG 225

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
             ++ VELF  M   G  P+  +  +++SAC   G V+ G ++  S+    GL+      
Sbjct: 226 CASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLH-SVALRLGLVSDSCVS 284

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAML 384
             +VD++ +   +  + +  + V    P   V  WTA++
Sbjct: 285 CGLVDMYAKLK-MERSMEHARKVFKTMPRHNVMSWTALI 322



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 14/217 (6%)

Query: 213 VLAACAQLGDIDLGRWVHEFIV-GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
           +L + A+ GD+ LGR +H  ++  + LD + V+A SL+ MY++CG V  AR +FD M  +
Sbjct: 46  LLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGV 105

Query: 272 -NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            ++++WTAM S    +G   E++ L   M   G+RPN  T  A   AC      QE  R+
Sbjct: 106 RDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARAC----FPQELFRL 161

Query: 331 FASMRQEYGLLPG-----VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
              +   + L  G     V     ++D+F R G L  A +    +I  +    VWT ++ 
Sbjct: 162 AGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLI--ERTSVVWTLLIT 219

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
                      VE+  H+L    E P  Y M S I A
Sbjct: 220 RYVQAGCASKVVELFLHMLDDGFE-PDGYSMSSMISA 255


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/542 (37%), Positives = 315/542 (58%), Gaps = 36/542 (6%)

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N ++   +++ +  ++++ ++++      P   T S+V+ S     +LN+GR +H +V 
Sbjct: 220 WNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVI 279

Query: 134 VSGYDSDLHVQAALVNFYAKSNNV-------------------------------DVARK 162
             G   D  V +A+++ Y KS +V                               D A +
Sbjct: 280 KQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALE 339

Query: 163 VFDRMPDKS----VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
           +F+   +++    VV+W S+I+G  QNG   EA+ LF  M+  GV P+  T   +L AC 
Sbjct: 340 MFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACG 399

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
            +  +  GR  H F V   L  NV + ++LI+MYA+CG ++ ++ +F+MM   N++ W +
Sbjct: 400 NIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNS 459

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           +++G+ MHG   E + +F  +    ++P+ ++F ++LSAC   GL  EG + F  M +EY
Sbjct: 460 LMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEY 519

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
           G+ P +EH+ CMV+L GRAG L EAY  +K++  E P   VW A+L +C++  N DL   
Sbjct: 520 GIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFE-PDSCVWGALLNSCRLQNNVDLAEI 578

Query: 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458
            AE L  +EPENPG YV+LSNIYA  G    V+ +RN M   GLKK+ G S ++V  + Y
Sbjct: 579 AAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVY 638

Query: 459 LFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLAL 518
               GDKSHP  ++I + +DE+    R++G+ P  + A+H++EE+E+E  L  HSEKLA+
Sbjct: 639 TLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAV 698

Query: 519 AFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLD 578
            FGL+ T  G  ++++KNLR+C DCH+ IKFIS    REI +RD  RFHHFK G CSC D
Sbjct: 699 VFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGD 758

Query: 579 YW 580
           +W
Sbjct: 759 FW 760



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/507 (24%), Positives = 221/507 (43%), Gaps = 94/507 (18%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           Q HA ++ +G      +  KL++   +      A  +   IP P  + F++LI   +KA 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
             T S+  + RM    + P ++    + K CA LS   +G+ +HC   VSG D D  VQ 
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSV--------------------------------- 172
           ++ + Y +   +  ARKVFDRM DK V                                 
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215

Query: 173 --VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH 230
             V+WN ++SG+ ++G+ KEA+ +F  +   G  PD  T   VL +      +++GR +H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 231 EFIVGQGLDVNVVLATSLINMYARCGN-------------------------------VS 259
            +++ QGL  +  + +++I+MY + G+                               V 
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335

Query: 260 KAREIFDMMS----ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           KA E+F++      ELNV++WT++I+G   +G   EA+ELF  M+  GV+PN+VT  ++L
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
            AC +   +  G R          LL  V     ++D++ + G +N + + V +++  K 
Sbjct: 396 PACGNIAALGHG-RSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLS-QIVFNMMPTKN 453

Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLL---------------------SVEPENPGHY 414
               W +++    MH      + + E L+                      +  E   ++
Sbjct: 454 L-VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query: 415 VMLSNIYALAGRMDRVEVVRNIMIQKG 441
            M+S  Y +  R++    + N++ + G
Sbjct: 513 KMMSEEYGIKPRLEHYSCMVNLLGRAG 539


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/559 (37%), Positives = 314/559 (56%), Gaps = 4/559 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +++H+ L + G+ R+      L+S+    G +  A+ IF  I       ++ +I   +  
Sbjct: 5   RRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALH 64

Query: 85  NFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG--YDSDL 141
               ++LL + RM     + P+  TF+ V  +C  +  L  GR +H     SG    S+ 
Sbjct: 65  GRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNA 124

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            ++ AL+N Y +  +++ ARKVFD M      +W SMI+   +N    EA+ LF+ M   
Sbjct: 125 ILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLE 184

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G+ P S T   VL ACA  G + +G+ +H  +   G   +V+  T+L++MYA+CG++  +
Sbjct: 185 GIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECS 244

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
            ++F  M   N ++WTAMI+    HG G EA+ELF  M   G+  +  TF+ VL AC+HA
Sbjct: 245 SKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHA 304

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
           GL++E    F SM ++Y + P   H+   +D  GRAG L +A + +   +   P    W 
Sbjct: 305 GLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHS-MPFHPETLTWK 363

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
            +L AC++H   +   +VAE L  + PE+   Y +L N+YA  GR      VR  M  +G
Sbjct: 364 TLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRG 423

Query: 442 LKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE 501
           LKK  G S +EV  K + F  GD++HP+ +EI   L++L GR REAGYVP ++  +H + 
Sbjct: 424 LKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVN 483

Query: 502 EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
           EEE+E  +  HSEKLA+AFGL+ T PG  + IVKNLR+C DCH+A K I+    R I+VR
Sbjct: 484 EEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVR 543

Query: 562 DRLRFHHFKRGSCSCLDYW 580
           D  RFHHF+ G CSC DYW
Sbjct: 544 DTHRFHHFEDGQCSCKDYW 562



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 91/278 (32%), Positives = 153/278 (55%), Gaps = 6/278 (2%)

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           GR +H  + + G+      Q  LV+ YAK   +D AR +F+ + +++VV+W++MI  Y  
Sbjct: 4   GRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYAL 63

Query: 185 NGFAKEAIGLFNLMRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG--LDVN 241
           +G  +EA+ LF+ MR+ G V P++ T   V  AC  + D++ GR +H   +  G     N
Sbjct: 64  HGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSN 123

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            +L  +L+NMY RCG++ +AR++FD M   +  +WT+MI+    +    EA+ELFHRM  
Sbjct: 124 AILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNL 183

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ P +VT  +VL+ACA +G ++ G ++ + +    G    V     ++D++ + G L 
Sbjct: 184 EGIPPTSVTLASVLNACACSGALKVGKQIHSRL-DASGFHSSVLAQTALLDMYAKCGSLE 242

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
            + K    +  E      WTAM+ A   H   D  +E+
Sbjct: 243 CSSKVFTAM--ETRNSVSWTAMIAALAQHGQGDEALEL 278



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 19/211 (9%)

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG 282
           ++ GR +H  +   G     +    L++MYA+CG + +AR IF+ + E  V++W+AMI  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 283 YGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFA------SMR 335
           Y +HG G EA+ LFHRMR  G V PN +TF  V +AC     +++G  + A       ++
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDL 395
               +L        +++++ R G L EA K    +  + P    WT+M+ AC   +N +L
Sbjct: 121 SSNAILENA-----LLNMYVRCGSLEEARKVFDTM--DHPDAFSWTSMITACT--ENCEL 171

Query: 396 GVEVAE--HLLSVEPENPGHYVMLSNIYALA 424
            +E  E  H +++E   P    + S + A A
Sbjct: 172 -LEALELFHRMNLEGIPPTSVTLASVLNACA 201



 Score = 45.1 bits (105), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 46/244 (18%), Positives = 99/244 (40%), Gaps = 33/244 (13%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  +Q+H+ L  +G+  S    T LL +    G +  + ++F  + + +S  +  +I  
Sbjct: 206 LKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAA 265

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY--- 137
            ++     ++L  ++ M +  +     TF  V+++C+H  ++        H  V  Y   
Sbjct: 266 LAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFF-HSMVEDYAIA 324

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMISGYEQNGFAKEAIGLFN 196
            ++ H   AL +   ++  +  A ++   MP     + W ++++    +  A+ A  +  
Sbjct: 325 PTETHYCRAL-DTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAE 383

Query: 197 LMRDFGVNPDSTTCVCVL----AACAQLGD---------------------IDLGRWVHE 231
           L+      P+ +    +L    AA  + GD                     I++   VHE
Sbjct: 384 LLSKLA--PEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVHE 441

Query: 232 FIVG 235
           F+ G
Sbjct: 442 FVAG 445


>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
          Length = 613

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/534 (36%), Positives = 302/534 (56%), Gaps = 8/534 (1%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLI-----IRNSKANFSTDSLLFYRRMIVSNISPSNYT 108
           G + YA  IF  +  P++F +NTL+                +L  +  M+   + P +YT
Sbjct: 81  GSMAYAASIFAALDDPEAFDYNTLMRGYVAAAGGGGRDPAAALRLFVDMVDDGVEPDSYT 140

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           F  V K+CA L  L  GR +  H+   G+  D H Q +L++FY K    D+AR+ F++M 
Sbjct: 141 FPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQME 200

Query: 169 D--KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226
           D  ++  +W+++++ Y + G   E +  F  M   G  PD ++ V  L+ACA LG  D+G
Sbjct: 201 DDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVG 260

Query: 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286
           R +H  ++     +N  ++TSL++MYA+CG +  A  +FD M + N   ++AM+SG  +H
Sbjct: 261 RSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALH 320

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
           G G +A+E+F  M   G RP+   +V VL+AC+ AGL++EG R F  MR E+ L P  +H
Sbjct: 321 GDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQH 380

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406
           + CMVDL  RAG L++A   +   +   P    W ++L AC++H N +L     + L  +
Sbjct: 381 YGCMVDLMARAGRLDDARALIGS-MPTGPTDTAWRSLLNACRIHGNLELAERALQELERL 439

Query: 407 EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKS 466
              N G Y++LS+++A A   D     R   + +GL +  GYS VEV    + F   D+S
Sbjct: 440 GATNAGDYIILSDMHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRS 499

Query: 467 HPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTS 526
           HP  ++IY+ L ++  + R  GY P++     +  EEE+   +  HS+KLA+AFGL+ T 
Sbjct: 500 HPRADDIYEMLHQMEWQLRFEGYTPDTSELALDAGEEEKRRVVAAHSQKLAMAFGLLSTP 559

Query: 527 PGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            G  +R+V NLRM  +CH+    IS    REI+VRDR RFH FKRG+CSC +YW
Sbjct: 560 EGAPVRVVTNLRMSKECHAYSALISEIFGREIVVRDRNRFHRFKRGACSCRNYW 613


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/585 (35%), Positives = 334/585 (57%), Gaps = 11/585 (1%)

Query: 2   KNKQPHSPAYEAILKAGPRL-KPL--QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
           +N +P+   +    KA   L  P   +Q+HA  +  G    + +      +    G    
Sbjct: 52  ENIKPNDFTFPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFE 111

Query: 59  AQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           AQR+F  +P  +  ++N  I   + + +   + D  + +RR+      P   TF A + +
Sbjct: 112 AQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRV---GGEPDLITFCAFLNA 168

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           CA    L+LGR +H  V  SG++ D+ V   +++ Y K   V++A  VF+ M  ++ V+W
Sbjct: 169 CADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSW 228

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
            +M++  EQN   ++A  +F + R  G+         V++A A +  ++ GR VH   V 
Sbjct: 229 CTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVK 288

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
             ++ ++ + ++L++MY +CG++    ++F  M E N+++W AMISGY   G    A+ L
Sbjct: 289 ACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTL 348

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355
           F  M++  V  N VT + VLSAC+  G V+ G+ +F SMR  Y + PG EH+ C+ D+ G
Sbjct: 349 FEEMQSEAV-ANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLG 407

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415
           RAG++  AY+FV+  +  +P  +VW A+L AC+++   +LG   A++L  ++P++ G++V
Sbjct: 408 RAGMVERAYEFVQK-MPIRPTISVWGALLNACRVYGEPELGKIAADNLFKLDPKDSGNHV 466

Query: 416 MLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQ 475
           +LSN++A AGR D   +VR  M   G+KK  G S V    K ++F   D SH   +EI  
Sbjct: 467 LLSNMFAAAGRWDEATLVRKEMKDVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQA 526

Query: 476 YLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVK 535
            L +L    + AGY+P++  A+++LEEEE+   + YHSEK+ALAFGL+   PG+ IRI K
Sbjct: 527 MLVKLRTEMQAAGYMPDTNYALYDLEEEEKMTEVGYHSEKIALAFGLIALPPGVPIRITK 586

Query: 536 NLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           NLR+C DCHSA KFIS    REIIVRD  RFH F+   CSC D+W
Sbjct: 587 NLRICGDCHSAFKFISGIVGREIIVRDNNRFHRFRDSQCSCRDFW 631



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 174/384 (45%), Gaps = 18/384 (4%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           AQ +    P+     +  LI  + +  + + +LL++ +M   NI P+++TF    K+   
Sbjct: 11  AQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFPCAFKASTA 70

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L +   G+ +H      G  +D  V  +  + Y+K+     A+++FD MP ++V  WN+ 
Sbjct: 71  LCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAY 130

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           IS    +G   +AI  F   R  G  PD  T    L ACA    +DLGR +H  ++  G 
Sbjct: 131 ISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGF 190

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           + +V +A  +I++Y +C  V  A  +F+ M   N ++W  M++    +    +A  +F  
Sbjct: 191 EGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLM 250

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLF 354
            R  G+   +    +V+SA A    ++ G  V A       +   VE  +     +VD++
Sbjct: 251 GRKEGIELTDYMVSSVISAYAGISGLEFGRSVHA-----LAVKACVEGDIFVGSALVDMY 305

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
           G+ G + +     + V  E P   +  W AM+       + D+ + + E + S   E   
Sbjct: 306 GKCGSIEDC----EQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQS---EAVA 358

Query: 413 HYVMLSNIYALAGRMDRVEVVRNI 436
           +YV L  + +   R   V++   I
Sbjct: 359 NYVTLICVLSACSRGGAVKLGNEI 382



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 159/358 (44%), Gaps = 42/358 (11%)

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
           Y+K +  + A+ +    P + VV W ++ISG  QNG+   A+  F+ MR   + P+  T 
Sbjct: 2   YSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTF 61

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
            C   A   L     G+ +H   +  G   +  +  S  +MY++ G   +A+ +FD M  
Sbjct: 62  PCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPP 121

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            NV  W A IS   + G   +A++ F   R  G  P+ +TF A L+ACA A  +  G   
Sbjct: 122 RNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLG--- 178

Query: 331 FASMRQEYGLL--PGVEHHVC----MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
               RQ +GL+   G E  V     ++D++G+   + E  + V + +G + + + W  M+
Sbjct: 179 ----RQLHGLVIRSGFEGDVSVANGIIDVYGKCKEV-ELAEMVFNGMGRRNSVS-WCTMV 232

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
            AC+ +                E E        + +  L GR + +E+  + M+   +  
Sbjct: 233 AACEQND---------------EKEK-------ACVVFLMGRKEGIELT-DYMVSSVISA 269

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
           + G S +E  +  +  ++      +   +   L ++ G+C   G + + E   HE+ E
Sbjct: 270 YAGISGLEFGRSVHALAVKACVEGDIF-VGSALVDMYGKC---GSIEDCEQVFHEMPE 323



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 44/256 (17%)

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MY++    + A+ +  +     V+ WTA+ISG   +GY + A+  F +MR   ++PN+ T
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           F     A     L   G ++ A +  + G +          D++ + GL  EA +   ++
Sbjct: 61  FPCAFKASTALCLPFAGKQIHA-IALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEM 119

Query: 371 ---------------------------------IGEKPAPAVWTAMLGACKMHKNFDLGV 397
                                            +G +P    + A L AC   +  DLG 
Sbjct: 120 PPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGR 179

Query: 398 EVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTV------ 451
           ++  H L +     G   + + I  + G+   VE+   +    G +  V + T+      
Sbjct: 180 QL--HGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQ 237

Query: 452 --EVDQKNYLFSMGDK 465
             E ++   +F MG K
Sbjct: 238 NDEKEKACVVFLMGRK 253


>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
 gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
          Length = 640

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/559 (39%), Positives = 328/559 (58%), Gaps = 28/559 (5%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIP---SPDSFL---FNTLIIRNSKANFSTDSLLFYR 95
           +L+ LL+     G +  A ++   +P   +P + L   FN++I   +       S   +R
Sbjct: 90  LLSALLTSYSRLGCLPLAHQLLDEMPLESTPHTTLRTAFNSVISGCALHALPVASFALFR 149

Query: 96  RMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155
           RM  + +     T  A++ +    + L++   VH      G  ++  V   L++ YA+  
Sbjct: 150 RMRAAAVGFDAVTLLALVPA----TPLSVVPQVHALAARVGLATETSVANCLMSTYARGG 205

Query: 156 --NVDVARKVFDRMP--DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD---FGVNPDST 208
                +AR+VFD MP   + +V+WN+++S + QNG A +A+ L+  MR     GV PD+ 
Sbjct: 206 AFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALELYRRMRSPEGSGVEPDAV 265

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQ--GLDVNVVLATSLINMYARCGNVSKAREIFD 266
           T V VL++ A LG   +G  V  ++  +  G   NV L  +LIN +ARCG++ +A+++FD
Sbjct: 266 TIVGVLSSAAHLGARGVGFDVEHYVRQRIPGFHTNVQLCNALINFHARCGSLPRAQQLFD 325

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M   ++++WTA+I+G+GMHG G  AV LF RM + G+RP+NV  VA+ SAC+HAGL  E
Sbjct: 326 EMPRKSIVSWTALITGHGMHGNGDVAVSLFERMVSEGIRPDNVAMVALFSACSHAGLYDE 385

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP---AVWTAM 383
           G R F++M   Y L P +EH+ CMVDL GRAG L EA    +++I   P P   AVW A+
Sbjct: 386 GRRYFSAMESVYKLRPTLEHYTCMVDLLGRAGRLEEA----RELISSMPMPADGAVWGAL 441

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           LGACK+HKN D+G E    ++ +EP+N G+YV++SNIY   G++D V  VR +M ++GLK
Sbjct: 442 LGACKIHKNVDVGEEAFTRVIELEPKNVGYYVLMSNIYTDTGQLDCVARVRAMMRERGLK 501

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESE--SAMHELE 501
           K  G S VE   + +LF   D SHP    IY+ +  L    +E   + ESE  +A   +E
Sbjct: 502 KEPGCSYVEHKGRVHLFMADDHSHPQARRIYELVIRLELMVKEKSGMRESEVAAAKGRME 561

Query: 502 EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
           +   +  +  HSEKLA+AFGL+ T  G  I ++KNLR+C DCHS +K +S  TNR  +VR
Sbjct: 562 KAAAQPLVGIHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKVVSATTNRAFLVR 621

Query: 562 DRLRFHHFKRGSCSCLDYW 580
           D  RFH F  G CSC DYW
Sbjct: 622 DASRFHRFDGGVCSCKDYW 640


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/536 (38%), Positives = 317/536 (59%), Gaps = 3/536 (0%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           L++     GF+  A+++F  +       +NT+I   ++    +++L  +  M       S
Sbjct: 104 LINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFS 163

Query: 106 NYTFSAVIKSC-AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
            +T S+V+ +C A+   L   + +HC    +  D +L+V  AL++ YAK   ++ A +VF
Sbjct: 164 EFTISSVLSACGANCDALEC-KKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVF 222

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           + M DKS V W+SM++GY Q+   +EA+ L+   +   +  +  T   V+ AC+ L  + 
Sbjct: 223 ESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALI 282

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
            G+ +H  I   G   NV +A+S ++MYA+CG++ ++  IF  + E N+  W  +ISG+ 
Sbjct: 283 EGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFA 342

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
            H    E + LF +M+  G+ PN VTF ++LS C H GLV+EG R F  MR  YGL P V
Sbjct: 343 KHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNV 402

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
            H+ CMVD+ GRAGLL+EAY+ +K +  E P  ++W ++L +C++ KN +L    A+ L 
Sbjct: 403 VHYSCMVDILGRAGLLSEAYELIKSIPFE-PTASIWGSLLASCRVCKNLELAEVAAKKLF 461

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
            +EPEN G++V+LSNIYA   + + +   R ++    +KK  G S +++  K ++F +G+
Sbjct: 462 ELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGE 521

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
            SHP   EI   LD L+   R+ GY P  E  +H++E  ++E  L  HSEKLAL FGLM 
Sbjct: 522 SSHPRIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMC 581

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
              G T+RI+KNLR+CVDCH  +K  S+AT R IIVRD  RFHHF  G CSC ++W
Sbjct: 582 LPEGSTVRIMKNLRICVDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 151/299 (50%), Gaps = 13/299 (4%)

Query: 102 ISPSNYT----------FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
           +SP  Y+          F  +++ CA    +   +A H          D+ +   L+N Y
Sbjct: 49  LSPGRYSDEFNVVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAY 108

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
           +K   V++AR+VFD M ++S+V+WN+MI  Y +N    EA+ +F  MR+ G      T  
Sbjct: 109 SKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTIS 168

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
            VL+AC    D    + +H   +   LD+N+ + T+L+++YA+CG ++ A ++F+ M + 
Sbjct: 169 SVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDK 228

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           + + W++M++GY       EA+ L+ R +   +  N  T  +V+ AC++   + EG ++ 
Sbjct: 229 SSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMH 288

Query: 332 ASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           A +R+  G    V      VD++ + G L E+Y    +V  ++    +W  ++     H
Sbjct: 289 AVIRKS-GFGSNVFVASSAVDMYAKCGSLRESYIIFSEV--QEKNIELWNTIISGFAKH 344



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 123/222 (55%), Gaps = 1/222 (0%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T LL L    G I  A ++F  +    S  +++++    ++    ++LL YRR    ++ 
Sbjct: 203 TALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLE 262

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
            + +T S+VI +C++L+ L  G+ +H  +  SG+ S++ V ++ V+ YAK  ++  +  +
Sbjct: 263 QNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYII 322

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F  + +K++  WN++ISG+ ++   KE + LF  M+  G++P+  T   +L+ C   G +
Sbjct: 323 FSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLV 382

Query: 224 DLGRWVHEFI-VGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           + GR   + +    GL  NVV  + ++++  R G +S+A E+
Sbjct: 383 EEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYEL 424



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 51/102 (50%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+HA +  +G+G +  + +  + +    G +  +  IF  +   +  L+NT+I   +K 
Sbjct: 285 KQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKH 344

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
               + ++ + +M    + P+  TFS+++  C H  ++  GR
Sbjct: 345 ARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGR 386


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/557 (34%), Positives = 332/557 (59%), Gaps = 23/557 (4%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + VH+  I + + R  +    LL +    G +  A R+F  +   +   + ++I   ++ 
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            +S  +++  ++M    +       ++++ +CA    L+ G+ VH ++  +   S+L V 
Sbjct: 331 GWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVC 390

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL++ YAK  +++ A  VF  M  K +++WN+M+                       + 
Sbjct: 391 NALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE---------------------LK 429

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PDS T  C+L ACA L  ++ G+ +H +I+  G   +  +A +L+++Y +CG +  AR +
Sbjct: 430 PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 489

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FDM+   ++++WT MI+GYGMHGYG EA+  F+ MR  G+ P+ V+F+++L AC+H+GL+
Sbjct: 490 FDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           ++G R F  M+ ++ + P +EH+ CMVDL  R G L++AYKF+ + +   P   +W A+L
Sbjct: 550 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFI-ETLPIAPDATIWGALL 608

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
             C+++ + +L  +VAE +  +EPEN G+YV+L+NIYA A + + V+ +R  + +KGL+K
Sbjct: 609 CGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRK 668

Query: 445 HVGYSTVEVDQKNYLFSMGDK-SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           + G S +E+  +  LF  G+  SHP++ +I   L ++  + +E GY P+++ A+   +E 
Sbjct: 669 NPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEM 728

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
           ++E +L  HSEKLA+AFGL+   P  TIR+ KNLR+C DCH   KF+S  T REI++RD 
Sbjct: 729 QKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDS 788

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFHHFK G CSC  +W
Sbjct: 789 NRFHHFKDGYCSCRGFW 805



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 160/362 (44%), Gaps = 68/362 (18%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T+ +V++ CA L  L  G+ VH  +  +    D  +   LV+FYA   ++   R+VFD M
Sbjct: 101 TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 168 P---------------------------------------------------DKSVVAWN 176
                                                               D+ V++WN
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
           SMISGY  NG  +  +G++  M   G++ D  T + VL  CA  G + LG+ VH   +  
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
             +  +  + +L++MY++CG++  A  +F+ M E NV++WT+MI+GY   G+   A+ L 
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILL 340

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLF 354
            +M   GV+ + V   ++L ACA +G +  G  V   ++            VC  ++D++
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANN---MASNLFVCNALMDMY 397

Query: 355 GRAGLLNEAYK-----FVKDVI------GE-KPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
            + G +  A        VKD+I      GE KP       +L AC      + G E+  +
Sbjct: 398 AKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGY 457

Query: 403 LL 404
           +L
Sbjct: 458 IL 459



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 166/335 (49%), Gaps = 30/335 (8%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A  +F  +   D   +N++I        +   L  Y++M+   I     T  +V+  CA+
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
              L+LG+AVH     S ++  ++    L++ Y+K  ++D A +VF++M +++VV+W SM
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           I+GY ++G++  AI L   M   GV  D      +L ACA+ G +D G+ VH++I    +
Sbjct: 324 IAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             N+ +  +L++MYA+CG++  A  +F  M   ++I+W  M+                  
Sbjct: 384 ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG----------------- 426

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEHHV--CMVDLFG 355
                ++P++ T   +L ACA    ++ G  +    +R  Y      + HV   +VDL+ 
Sbjct: 427 ----ELKPDSRTMACILPACASLSALERGKEIHGYILRNGY----SSDRHVANALVDLYV 478

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           + G+L  A + + D+I  K   + WT M+    MH
Sbjct: 479 KCGVLGLA-RLLFDMIPSKDLVS-WTVMIAGYGMH 511



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 18/185 (9%)

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           R  D  V  +N+ I  + Q G  + A+ L  + +   +  ++ T   VL  CA L  +  
Sbjct: 60  RTIDHQVTDYNAKILHFCQLGDLENAMELVCMCQKSEL--ETKTYGSVLQLCAGLKSLTD 117

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ VH  I    + V+  L   L++ YA CG++ + R +FD M + NV  W  M+S Y  
Sbjct: 118 GKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK 177

Query: 286 HGYGTEAVELFHRMRAHGV---RPNN-------------VTFVAVLSACAHAGLVQEGHR 329
            G   E++ LF  M   G+   RP +             +++ +++S     GL + G  
Sbjct: 178 IGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLG 237

Query: 330 VFASM 334
           ++  M
Sbjct: 238 IYKQM 242



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 5/182 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P S     IL A   L  L+   ++H +++  GY   R +   L+ L    G +  A+ 
Sbjct: 429 KPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARL 488

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  IPS D   +  +I       +  +++  +  M  + I P   +F +++ +C+H  +
Sbjct: 489 LFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGL 548

Query: 122 LNLG-RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMI 179
           L  G R  +        +  L   A +V+  +++ N+  A K  + +P       W +++
Sbjct: 549 LEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALL 608

Query: 180 SG 181
            G
Sbjct: 609 CG 610


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/615 (35%), Positives = 343/615 (55%), Gaps = 41/615 (6%)

Query: 5   QPHSPAYEAILKA----GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           +P  P + A  KA    G  L+ +++VH      G      +   L+        +  A+
Sbjct: 161 KPDMPVFLAAAKACAVSGDALR-VKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGAR 219

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           R+F  +   D   + +L     K  F    +  +R M  S + P+  T S+++ +CA L 
Sbjct: 220 RVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELK 279

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L  G+ +H      G   +L V +ALV+ YAK  +V  AR VFD MP + VV+WN +++
Sbjct: 280 DLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLT 339

Query: 181 GY-----------------------------------EQNGFAKEAIGLFNLMRDFGVNP 205
            Y                                    +NG ++EA+ +F  M+  G  P
Sbjct: 340 AYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKP 399

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           +  T   +L AC+   ++ +G+ +H ++       ++   T+L+ MYA+CG+++ +R +F
Sbjct: 400 NEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVF 459

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           DMM   +V+AW  MI    MHG G EA+ LF +M    V+PN+VTF  VLS C+H+ LV+
Sbjct: 460 DMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVE 519

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           EG ++F SM +++ + P   H+ C+VD++ RAG LNEAYKF++ +  E P  + W A+L 
Sbjct: 520 EGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPME-PTASAWGALLA 578

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           AC+++KN +L    A+ L  +EP NPG+YV L NI   A        VR +M ++G+ K 
Sbjct: 579 ACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKT 638

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
            G S ++V  K + F +GDKS+  +++IY +LDEL+ + + AGY P+++  + ++++EE+
Sbjct: 639 PGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEK 698

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
             SL  HSEKLA+AFG++  +   TIR+ KNLR+C DCH+AIK++S      I+VRD LR
Sbjct: 699 AESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLR 758

Query: 566 FHHFKRGSCSCLDYW 580
           FHHFK G+CSC D W
Sbjct: 759 FHHFKNGNCSCKDLW 773



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 156/298 (52%), Gaps = 1/298 (0%)

Query: 45  KLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP 104
           +L+ +  + G    A+++F  IP PD    +TLI   +    S +++  Y  +    I P
Sbjct: 103 RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKP 162

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
               F A  K+CA        + VH      G  SD+ V  AL++ Y K   V+ AR+VF
Sbjct: 163 DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 222

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           D +  + VV+W S+ S Y + GF ++ + +F  M   GV P+  T   +L ACA+L D+ 
Sbjct: 223 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 282

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
            G+ +H F V  G+ VN+ + ++L+++YA+C +V +AR +FD+M   +V++W  +++ Y 
Sbjct: 283 SGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 342

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
            +    +   LF +M   GVR +  T+ AV+  C   G  +E   +F  M Q+ G  P
Sbjct: 343 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKM-QKMGFKP 399



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 130/257 (50%), Gaps = 7/257 (2%)

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
           H+   L+       + + AR++FD +P       +++IS    +G + EAI +++ +++ 
Sbjct: 99  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 158

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G+ PD    +    ACA  GD    + VH+     G+  +V +  +LI+ Y +C  V  A
Sbjct: 159 GIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGA 218

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           R +FD +   +V++WT++ S Y   G+  + +++F  M   GV+PN +T  ++L ACA  
Sbjct: 219 RRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAEL 278

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
             ++ G  +       +G++  V   VC  +V L+ +   + EA + V D++  +   + 
Sbjct: 279 KDLKSGKEIHG-FAVRHGMV--VNLFVCSALVSLYAKCLSVREA-RMVFDLMPHRDVVS- 333

Query: 380 WTAMLGACKMHKNFDLG 396
           W  +L A   +K ++ G
Sbjct: 334 WNGVLTAYFKNKEYEKG 350


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/571 (35%), Positives = 323/571 (56%), Gaps = 19/571 (3%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH + I  G     SM   L SL    G +  A R F+ IP  +   + T+I   ++ 
Sbjct: 199 KQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAED 258

Query: 85  NFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
               +  L  +  M++  + P+ +T ++V+  C     LNLG+ V    F  G +++L V
Sbjct: 259 EECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPV 318

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ-------------NGFAKE 190
           + + +  Y +    D A ++F++M D S++ WN+MISGY Q              GF  +
Sbjct: 319 KNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGF--Q 376

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ +F  ++   + PD  T   +L+ C+ +  ++ G  +H   +  G   +VV+ ++L+N
Sbjct: 377 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVN 436

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MY +CG +  A + F  M     + WT+MISGY  HG   EA++LF  MR  GVRPN +T
Sbjct: 437 MYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEIT 496

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           FV++LSAC++AGLV+E    F  M++EY + P V+H+ CM+D+F R G + +A+ F+K  
Sbjct: 497 FVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRT 556

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
            G +P  A+W++++  C+ H N +L    A+ LL ++P+    Y++L N+Y    R   V
Sbjct: 557 -GFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDV 615

Query: 431 EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
             VR +M Q+ +      S + +  K Y F   D++HP   E+YQ L+ L+ + +  GY 
Sbjct: 616 ARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYE 675

Query: 491 PESESAMHELEEEEREY--SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           P   + + + E++E+    SL++HSE+LA+A GL++T PG T+R+ KN+ MC DCHS+IK
Sbjct: 676 PYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIK 735

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
             S+  NREIIVRD  R H FK G CSC D+
Sbjct: 736 LFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 198/427 (46%), Gaps = 22/427 (5%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L   + VH H+   G G    + T L++     G    A+R+F  +P  +   +  L+  
Sbjct: 94  LGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTG 153

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            +  +     L  +  M+     PS+YT  A + +C     ++LG+ VH +    G +S 
Sbjct: 154 YTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESI 213

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE-AIGLFNLMR 199
             +  +L + YAK  ++D A + F R+P+K+V+ W +MIS   ++    E  + LF  M 
Sbjct: 214 TSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDML 273

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             GV P+  T   V++ C    D++LG+ V  F    G + N+ +  S + +Y R G   
Sbjct: 274 MDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETD 333

Query: 260 KAREIFDMMSELNVIAWTAMISGYGM-----------HGYGTEAVELFHRMRAHGVRPNN 308
           +A  +F+ M + ++I W AMISGY                G +A+ +F  ++   ++P+ 
Sbjct: 334 EAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDL 393

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
            TF ++LS C+    +++G ++ A   +  G L  V  +  +V+++ + G + +A K   
Sbjct: 394 FTFSSILSVCSAMMALEQGEQIHAQTIKS-GFLSDVVVNSALVNMYNKCGCIQDANK--- 449

Query: 369 DVIGEKPAPA--VWTAMLGACKMHKNFDLGVEVAEH--LLSVEPENPGHYVMLSNIYALA 424
               E P      WT+M+     H      +++ E   L  V P N   +V L +  + A
Sbjct: 450 -AFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRP-NEITFVSLLSACSYA 507

Query: 425 GRMDRVE 431
           G ++  E
Sbjct: 508 GLVEEAE 514



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 138/293 (47%), Gaps = 12/293 (4%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M+    +  +  +  ++  C  +  L   RAVH H+  +G  +D+ V  +LVN Y +   
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGA 128

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
              AR++FD MP+++VV W ++++GY  N      + +F  M + G  P   T    L A
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C    D+DLG+ VH + +  G +    +  SL ++YA+ G++  A   F  + E NVI W
Sbjct: 189 CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITW 248

Query: 277 TAMISGYGMHGYGTE-AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           T MIS         E  + LF  M   GV PN  T  +V+S C     +  G +V     
Sbjct: 249 TTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQV----- 303

Query: 336 QEYGLLPGVEHHVCMVD----LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           Q +    G E ++ + +    L+ R G  +EA +  + +  E  +   W AM+
Sbjct: 304 QAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQM--EDASIITWNAMI 354


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/579 (35%), Positives = 336/579 (58%), Gaps = 5/579 (0%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P   A+ + ++A   L  ++   Q+H   +  G G    + + L  +    G +  A ++
Sbjct: 104 PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKV 163

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +P  D   +  +I   SK     ++LL +++MI   ++   +   + + +C  L   
Sbjct: 164 FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKAC 223

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-KSVVAWNSMISG 181
             GR+VH  V   G++SD+ V  AL + Y+K+ +++ A  VF    + ++VV++  +I G
Sbjct: 224 KFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDG 283

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y +    ++ + +F  +R  G+ P+  T   ++ ACA    ++ G  +H  ++    D +
Sbjct: 284 YVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDED 343

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +++ L++MY +CG +  A + FD + +   IAW +++S +G HG G +A++ F RM  
Sbjct: 344 PFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVD 403

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            GV+PN +TF+++L+ C+HAGLV+EG   F SM + YG++PG EH+ C++DL GRAG L 
Sbjct: 404 RGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLK 463

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA +F+  +  E P    W + LGAC++H + ++G   AE L+ +EP+N G  V+LSNIY
Sbjct: 464 EAKEFINRMPFE-PNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIY 522

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A   + + V  VR  M    +KK  GYS V+V  K ++F   D SH   + IY+ LD L+
Sbjct: 523 ANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLL 582

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
            + + AGYVP ++S   ++++  +E  L  HSE++A+AF L+    G  I + KNLR+CV
Sbjct: 583 DQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCV 642

Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           DCHSAIKFIS  T R+IIVRD  RFHHF  GSCSC DYW
Sbjct: 643 DCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 193/373 (51%), Gaps = 6/373 (1%)

Query: 20  RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
           RL+  +Q+HA LI AGY     +   L+++    G + +A ++F  +P  +   +  +I 
Sbjct: 20  RLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMIS 79

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             S+ +  ++++  +  M +    P+ + FS+ I++CA L  + +G+ +HC     G  S
Sbjct: 80  GLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGS 139

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           +L V + L + Y+K   +  A KVF+ MP K  V+W +MI GY + G  +EA+  F  M 
Sbjct: 140 ELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMI 199

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
           D  V  D       L AC  L     GR VH  +V  G + ++ +  +L +MY++ G++ 
Sbjct: 200 DEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDME 259

Query: 260 KAREIFDMMSEL-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
            A  +F + SE  NV+++T +I GY       + + +F  +R  G+ PN  TF +++ AC
Sbjct: 260 SASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKAC 319

Query: 319 AHAGLVQEGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           A+   +++G ++ A  M+  +   P V     +VD++G+ GLL  A +   D IG+ P  
Sbjct: 320 ANQAALEQGTQLHAQVMKINFDEDPFVSS--ILVDMYGKCGLLEHAIQAF-DEIGD-PTE 375

Query: 378 AVWTAMLGACKMH 390
             W +++     H
Sbjct: 376 IAWNSLVSVFGQH 388



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 127/252 (50%), Gaps = 1/252 (0%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
           VI++ A    L  G+ +H  +  +GY     +   LVN Y+K   +D A K+FD MP ++
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRN 70

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           +V+W +MISG  QN    EAI  F  MR  G  P        + ACA LG I++G+ +H 
Sbjct: 71  LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC 130

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
             +  G+   + + ++L +MY++CG +  A ++F+ M   + ++WTAMI GY   G   E
Sbjct: 131 LALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEE 190

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351
           A+  F +M    V  +     + L AC      + G  V +S+ +  G    +     + 
Sbjct: 191 ALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK-LGFESDIFVGNALT 249

Query: 352 DLFGRAGLLNEA 363
           D++ +AG +  A
Sbjct: 250 DMYSKAGDMESA 261



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 7/181 (3%)

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           D+     V+   A+   +  G+ +H  ++  G      L   L+NMY++CG +  A ++F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D M + N+++WTAMISG   +   +EA+  F  MR  G  P    F + + ACA  G ++
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP--AVWTAM 383
            G ++   +  ++G+   +     + D++ + G + +A K    V  E P      WTAM
Sbjct: 124 MGKQMHC-LALKFGIGSELFVGSNLEDMYSKCGAMFDACK----VFEEMPCKDEVSWTAM 178

Query: 384 L 384
           +
Sbjct: 179 I 179


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/539 (38%), Positives = 313/539 (58%), Gaps = 32/539 (5%)

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
           ++N LI  ++++     S   +  M+ ++   +  T+ +V+ +C     L LG  VH  V
Sbjct: 128 MWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRV 187

Query: 133 FVSGYDSDLHVQAALVNFYA-------------------------------KSNNVDVAR 161
             SG   D  V+ ALV+ YA                               +S  VD AR
Sbjct: 188 LESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRAR 247

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
            +FD MP++  +AW +MI GY Q G  ++A+  F  M+   V  D  T V V+ ACAQLG
Sbjct: 248 DLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLG 307

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            ++ G W   ++   G+ ++V +  +LI+MY++CG++ +A ++F  M   +   WTA+I 
Sbjct: 308 ALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIIL 367

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           G  ++G G EA+++F+RM      P+ VTFV VL+AC HAGLV +G   F SM + Y + 
Sbjct: 368 GLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNIS 427

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
           P V H+ C++D+ GRAG L EA   + D +  KP   +W  +L +C+++ N ++G   AE
Sbjct: 428 PTVVHYGCLIDVLGRAGKLKEALDTI-DKMPMKPNSTIWGTLLASCRVYGNSEIGELAAE 486

Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
            LL ++P+N   Y++LSN+YA + R   V  +R I+++KG+KK  G S +E++   + F 
Sbjct: 487 RLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFV 546

Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
             D+SHP   EIY  L+ ++   R AGYVP+    + E+ EEE++  L +HSEKLA+ F 
Sbjct: 547 AADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFA 606

Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           L+ +   + IRIVKNLRMC+DCH+AIK IS    RE+IVRDR RFHHF+ GSCSC DYW
Sbjct: 607 LLTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 151/331 (45%), Gaps = 43/331 (12%)

Query: 94  YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA-----VHCHVFVSGYDSDLHVQAALV 148
           Y RM+     P  YTF +++K+ A      +  A     +H HV   G +S+ H  ++L+
Sbjct: 39  YVRMLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLI 98

Query: 149 NFYAKSNNVDVARKVFDR----MPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             YA   +   AR V +         + V WN++ISG+ ++G  + +   F  M      
Sbjct: 99  VMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRASAM 158

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN------- 257
             + T V VL+AC +  D+ LG  VH+ ++  G+  +  +  +L++MYA CG+       
Sbjct: 159 ATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVL 218

Query: 258 ------------------------VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
                                   V +AR++FD M E + IAWTAMI GY   G   +A+
Sbjct: 219 FEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDAL 278

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           E F  M+   VR +  T V+V++ACA  G ++ G      M +  G+   V     ++D+
Sbjct: 279 ETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGR-LGIKMDVFVGNALIDM 337

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           + + G +  A    KD+         WTA++
Sbjct: 338 YSKCGSIERALDVFKDM--HNRDKFTWTAII 366



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 129/287 (44%), Gaps = 16/287 (5%)

Query: 38  RSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRM 97
           RS +  T ++S +  +G +  A+ +F  +P  D+  +  +I    +     D+L  +R M
Sbjct: 225 RSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYM 284

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
            +  +    +T  +V+ +CA L  L  G     ++   G   D+ V  AL++ Y+K  ++
Sbjct: 285 QICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSI 344

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
           + A  VF  M ++    W ++I G   NG  +EAI +F  M      PD  T V VL AC
Sbjct: 345 ERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTAC 404

Query: 218 AQLGDIDLGRWVHEFIVGQ----GLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELN 272
              G +D GR   EF +       +   VV    LI++  R G + +A +  D M  + N
Sbjct: 405 THAGLVDKGR---EFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPN 461

Query: 273 VIAWTAMISG---YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
              W  +++    YG    G  A E     R   + P+N T   +LS
Sbjct: 462 STIWGTLLASCRVYGNSEIGELAAE-----RLLELDPDNSTAYILLS 503


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/587 (34%), Positives = 339/587 (57%), Gaps = 20/587 (3%)

Query: 5   QPHSPAYEAILKA--GPRLKPL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P+S  Y ++L++  GP    L +Q+H+H+I A    + ++ T + ++    G++  A+ 
Sbjct: 185 RPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKL 244

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  + + ++  +  L++  ++A     +L  + RM +  +    + FS V+K C  L  
Sbjct: 245 VFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLED 304

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
            ++GR +H H+   G +S++ V   LV+FY K  +++ A + F R+ + + V+W+++ISG
Sbjct: 305 WDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISG 364

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           + Q+G  ++ I +F  +R  GV  +S     V  ACA   ++++G   H   + +GL   
Sbjct: 365 FSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSY 424

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           +   ++++ MY++CG +  AR  F+ + E + +AWTA+ISGY  HG   EA+  F RM++
Sbjct: 425 LYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQS 484

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
           +GVRPN VTF+AVL+AC+H+GLV E  +   SM ++YG+ P ++H+ CM+D + RAGLL 
Sbjct: 485 YGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQ 544

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA + +  +  E P    W ++LG C  H +  LG   AE+L  ++P +   Y++L N+Y
Sbjct: 545 EALELINRMPFE-PDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLY 603

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           +  G+ +    VR +M ++ LKK V  S + V  + + F +GD+ HP T  IY  L+E  
Sbjct: 604 SAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTEAIYSKLEEF- 662

Query: 482 GRCREAGYVPESESAMHELEEEE--------REYSLRYHSEKLALAFGLMRTSPGMTIRI 533
            +C         +S +  L EE+        R+  L  HSEKLA+AFGL+ T     I +
Sbjct: 663 -KCSVI------DSPVRLLNEEDDVSCSLSARKEQLLDHSEKLAIAFGLISTEDNAPILV 715

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            KNLR C DCH   K +S+ T R+I+VRD  RFHHFK G CSC DYW
Sbjct: 716 FKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCSCNDYW 762



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 190/390 (48%), Gaps = 8/390 (2%)

Query: 6   PHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           PHS  Y+ + +A  +L+ L     +H  L       S S+   LL + CD G     Q++
Sbjct: 87  PHS--YQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQKV 144

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
           F  +   +   +  +I   +K      ++  +  M  S I P++  + ++++SC   S L
Sbjct: 145 FDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFL 204

Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
            LG+ +H HV  +  ++++ V+ A+ N Y +   ++ A+ VFD M  ++ V W  ++ GY
Sbjct: 205 ELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGY 264

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
            Q    + A+ LF  M   GV  D      VL  C  L D D+GR +H  IV  G +  V
Sbjct: 265 TQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEV 324

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
            + T L++ Y +CG++  A   F  +SE N ++W+A+ISG+   G   + +++F  +R+ 
Sbjct: 325 SVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSE 384

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           GV  N+  + +V  ACA    +  G +      +  GL+  +     MV ++ + G L+ 
Sbjct: 385 GVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKR-GLVSYLYGESAMVTMYSKCGRLDY 443

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKN 392
           A +  + +  ++P    WTA++     H N
Sbjct: 444 ARRAFESI--DEPDAVAWTAIISGYAYHGN 471



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 107/217 (49%), Gaps = 5/217 (2%)

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243
           + G  KEA      M D  V+    +  C+  AC +L  +  GR +H+ +     + +  
Sbjct: 64  KQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGS 123

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           +   L+ MY  CG+    +++FD M   N+++W  +IS Y  +G   +A+ LF  M+A G
Sbjct: 124 IENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG 183

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
           +RPN+  ++++L +C     ++ G ++ +  +R +      VE  +C  +++ R G L E
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAIC--NMYVRCGWL-E 240

Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399
             K V D +  + A   WT ++      K  ++ +E+
Sbjct: 241 GAKLVFDGMDAQNA-VTWTGLMVGYTQAKKLEVALEL 276


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/582 (34%), Positives = 340/582 (58%), Gaps = 11/582 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P      +IL+A   L  L+    VH ++I +GY    +    L+++    G +  +Q 
Sbjct: 313 KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQE 372

Query: 62  IFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           +F  +   DS  +N++I   I+N     S D  +   +M+ +++ P + T+  ++     
Sbjct: 373 VFSGMKCKDSVSWNSMINVYIQNG----SFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQ 428

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L  L+LG+ +HC +   G++S++ V   LV+ YAK   +  + KVF+ M  + ++ WN++
Sbjct: 429 LGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTI 488

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           I+    +      + + + MR  GV PD  T + +L  C+ L     G+ +H  I   GL
Sbjct: 489 IASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGL 548

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           + +V +   LI MY++CG++  + ++F +M   +V+ WTA+IS  GM+G G +AV  F  
Sbjct: 549 ESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGE 608

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M A G+ P++V FVA++ AC+H+GLV+EG   F  M+++Y + P +EH+ C+VDL  R+ 
Sbjct: 609 MEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSA 668

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           LL++A  F+   +  KP  ++W A+L AC+M  + ++   V+E ++ + P++ G+YV++S
Sbjct: 669 LLDKAEDFILS-MPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVS 727

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           NIYA  G+ D+V  +R  +  +GLKK  G S +E+  K Y+F  G K      E+ + L 
Sbjct: 728 NIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLG 787

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
            L G   + GY+   +  +H+++E+E+   L  HSE+LA+AFGL+ T PG  ++++KNLR
Sbjct: 788 MLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLR 847

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+  K+IS    RE++VRD  RFH FK G+CSC DYW
Sbjct: 848 VCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 224/456 (49%), Gaps = 15/456 (3%)

Query: 15  LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF-FCIPSPDSFL 73
           L +      L ++H+ +I  G   S     KL++        T +  +F    PS + +L
Sbjct: 23  LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYL 82

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N++I   +     +++L  Y       + P  YTF +VI +CA L    + +++H  V 
Sbjct: 83  WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 142

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
             G+ SDL++  AL++ Y + N++D ARKVF+ MP + VV+WNS+ISGY  NG+  EA+ 
Sbjct: 143 DMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALE 202

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           ++   R+ GV PDS T   VL AC  LG ++ G  +H  I   G+  +V++   L++MY 
Sbjct: 203 IYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYC 262

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +   +   R IFD M   + ++W  MI GY   G   E+++LF  M  +  +P+ +T  +
Sbjct: 263 KFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITS 321

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC----MVDLFGRAGLLNEAYKFVKD 369
           +L AC H G ++ G  V      +Y +  G E        +++++ + G L  + +    
Sbjct: 322 ILQACGHLGDLEFGKYV-----HDYMITSGYECDTTASNILINMYAKCGNLLASQEVFS- 375

Query: 370 VIGEKPAPAV-WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
             G K   +V W +M+     + +FD  +++ + + +    +   YVML ++    G + 
Sbjct: 376 --GMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLH 433

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
             + +   + + G   ++  S   VD       MGD
Sbjct: 434 LGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGD 469


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/406 (46%), Positives = 267/406 (65%), Gaps = 2/406 (0%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L+  YA++  V  AR +FD MP ++ V+W++M++GY Q G  +EA+GLF  M+  GV PD
Sbjct: 283 LITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPD 342

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
            T  V VLAACAQLG ++ G+WVH ++    + + V L T+L++MYA+CG +  A E+F 
Sbjct: 343 DTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFK 402

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
           +M E NV+AWT MI G  MHG G+EA+ELF +M   GV+P+++ F+  L AC H GLV +
Sbjct: 403 VMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDK 462

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G  +F SM ++YG+ P +EH+ CMVDL  R GLLNEA + V+  +  KP   +W A++  
Sbjct: 463 GRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEK-MPMKPDALIWGALMAG 521

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C+ HKN +L   V +H + +EP+  G YV+L NIYA +GR      +R++M +KG+ K  
Sbjct: 522 CRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTP 581

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR-EAGYVPESESAMHELEEEER 505
           G STVE+    + F +GD SHP   EI    DE+  R R E GYVP+ +  + ++EEEE+
Sbjct: 582 GCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEK 641

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFIS 551
           E +L  HSEK+A+AF L+ TS  M IRIVKNLR+C DCH   K IS
Sbjct: 642 ENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLIS 687



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 130/248 (52%), Gaps = 2/248 (0%)

Query: 41  SMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS 100
           S    L++    AG +T A+ +F  +P+ ++  ++ ++    +A    ++L  + RM   
Sbjct: 278 STFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQAD 337

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
            + P +     V+ +CA L +L  G+ VH ++  +     + +  ALV+ YAK   + +A
Sbjct: 338 GVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLA 397

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
            +VF  M +K+V+AW +MI G   +G   EA+ LF+ M   GV PD    +  L AC   
Sbjct: 398 MEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHT 457

Query: 221 GDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTA 278
           G +D GR + + +V + G+   +     ++++ AR G +++ARE+ + M  + + + W A
Sbjct: 458 GLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGA 517

Query: 279 MISGYGMH 286
           +++G   H
Sbjct: 518 LMAGCRFH 525



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 15/194 (7%)

Query: 229 VHEFIVGQGLDVNVVLAT----------SLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
           VH  I+G+  D  V+L T          +LI  YAR G V+ AR +FD M   N ++W+A
Sbjct: 254 VHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSA 313

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           M++GY   G G EA+ LF RM+A GVRP++   V VL+ACA  G++++G  V   ++   
Sbjct: 314 MVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKAN- 372

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
            +   V     +VD++ + G +  A +  K V+ EK   A WT M+    MH      +E
Sbjct: 373 NIRITVFLGTALVDMYAKCGEMQLAMEVFK-VMKEKNVLA-WTTMIKGLAMHGRGSEALE 430

Query: 399 VAEHL--LSVEPEN 410
           +   +  L V+P++
Sbjct: 431 LFSQMERLGVKPDD 444


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/557 (34%), Positives = 332/557 (59%), Gaps = 23/557 (4%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + VH+  I + + R  +    LL +    G +  A R+F  +   +   + ++I   ++ 
Sbjct: 133 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 192

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            +S  +++  ++M    +       ++++ +CA    L+ G+ VH ++  +   S+L V 
Sbjct: 193 GWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVC 252

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL++ YAK  +++ A  VF  M  K +++WN+M+                       + 
Sbjct: 253 NALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE---------------------LK 291

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PDS T  C+L ACA L  ++ G+ +H +I+  G   +  +A +L+++Y +CG +  AR +
Sbjct: 292 PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 351

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FDM+   ++++WT MI+GYGMHGYG EA+  F+ MR  G+ P+ V+F+++L AC+H+GL+
Sbjct: 352 FDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 411

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           ++G R F  M+ ++ + P +EH+ CMVDL  R G L++AYKF+ + +   P   +W A+L
Sbjct: 412 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFI-ETLPIAPDATIWGALL 470

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
             C+++ + +L  +VAE +  +EPEN G+YV+L+NIYA A + + V+ +R  + +KGL+K
Sbjct: 471 CGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRK 530

Query: 445 HVGYSTVEVDQKNYLFSMG-DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           + G S +E+  +  LF  G + SHP++ +I   L ++  + +E GY P+++ A+   +E 
Sbjct: 531 NPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEM 590

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
           ++E +L  HSEKLA+AFGL+   P  TIR+ KNLR+C DCH   KF+S  T REI++RD 
Sbjct: 591 QKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDS 650

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFHHFK G CSC  +W
Sbjct: 651 NRFHHFKDGYCSCRGFW 667



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 165/335 (49%), Gaps = 30/335 (8%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A  +F  +   D   +N++I        +   L  Y++M+   I     T  +V+  CA 
Sbjct: 66  ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAK 125

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
              L+LG+AVH     S ++  ++    L++ Y+K  ++D A +VF++M +++VV+W SM
Sbjct: 126 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 185

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           I+GY ++G++  AI L   M   GV  D      +L ACA+ G +D G+ VH++I    +
Sbjct: 186 IAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 245

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             N+ +  +L++MYA+CG++  A  +F  M   ++I+W  M+                  
Sbjct: 246 ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG----------------- 288

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEHHV--CMVDLFG 355
                ++P++ T   +L ACA    ++ G  +    +R  Y      + HV   +VDL+ 
Sbjct: 289 ----ELKPDSRTMACILPACASLSALERGKEIHGYILRNGY----SSDRHVANALVDLYV 340

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           + G+L  A + + D+I  K   + WT M+    MH
Sbjct: 341 KCGVLGLA-RLLFDMIPSKDLVS-WTVMIAGYGMH 373



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 137/261 (52%), Gaps = 17/261 (6%)

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
           + A ++FD++ D+ V++WNSMISGY  NG  +  +G++  M   G++ D  T + VL  C
Sbjct: 64  ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 123

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
           A+ G + LG+ VH   +    +  +  + +L++MY++CG++  A  +F+ M E NV++WT
Sbjct: 124 AKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 183

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
           +MI+GY   G+   A+ L  +M   GV+ + V   ++L ACA +G +  G  V   ++  
Sbjct: 184 SMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 243

Query: 338 YGLLPGVEHHVC--MVDLFGRAGLLNEAYK-----FVKDVI------GE-KPAPAVWTAM 383
                     VC  ++D++ + G +  A        VKD+I      GE KP       +
Sbjct: 244 N---MASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACI 300

Query: 384 LGACKMHKNFDLGVEVAEHLL 404
           L AC      + G E+  ++L
Sbjct: 301 LPACASLSALERGKEIHGYIL 321



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 5/182 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P S     IL A   L  L+   ++H +++  GY   R +   L+ L    G +  A+ 
Sbjct: 291 KPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARL 350

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  IPS D   +  +I       +  +++  +  M  + I P   +F +++ +C+H  +
Sbjct: 351 LFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGL 410

Query: 122 LNLG-RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMI 179
           L  G R  +        +  L   A +V+  +++ N+  A K  + +P       W +++
Sbjct: 411 LEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALL 470

Query: 180 SG 181
            G
Sbjct: 471 CG 472


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/571 (35%), Positives = 323/571 (56%), Gaps = 19/571 (3%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH + I  G     SM   L SL    G +  A R F+ IP  +   + T+I   ++ 
Sbjct: 159 KQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAED 218

Query: 85  NFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
               +  +  +  M++  + P+ +T ++V+  C     LNLG+ V    F  G +++L V
Sbjct: 219 EECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPV 278

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ-------------NGFAKE 190
           + + +  Y +    D A ++F++M D S++ WN+MISGY Q              GF  +
Sbjct: 279 KNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGF--Q 336

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ +F  ++   + PD  T   +L+ C+ +  ++ G  +H   +  G   +VV+ ++L+N
Sbjct: 337 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVN 396

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MY +CG +  A + F  M     + WT+MISGY  HG   EA++LF  MR  GVRPN +T
Sbjct: 397 MYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEIT 456

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           FV++LSAC++AGLV+E    F  M++EY + P V+H+ CM+D+F R G + +A+ F+K  
Sbjct: 457 FVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRT 516

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
            G +P  A+W++++  C+ H N +L    A+ LL ++P+    Y++L N+Y    R   V
Sbjct: 517 -GFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDV 575

Query: 431 EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
             VR +M Q+ +      S + +  K Y F   D++HP   E+YQ L+ L+ + +  GY 
Sbjct: 576 ARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYE 635

Query: 491 PESESAMHELEEEEREY--SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           P   + + + E++E+    SL++HSE+LA+A GL++T PG T+R+ KN+ MC DCHS+IK
Sbjct: 636 PYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIK 695

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
             S+  NREIIVRD  R H FK G CSC D+
Sbjct: 696 LFSLLENREIIVRDSKRLHKFKDGRCSCGDF 726



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 184/389 (47%), Gaps = 22/389 (5%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+R+F  +P  +   +  L+   +  +     L  +  M+     PS+YT  A + +C  
Sbjct: 92  ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLA 151

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
              ++LG+ VH +    G +S   +  +L + YAK  ++D A + F R+P+K+V+ W +M
Sbjct: 152 SCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTM 211

Query: 179 ISGYEQNGFAKE-AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237
           IS   ++    E  + LF  M   GV P+  T   V++ C    D++LG+ V  F    G
Sbjct: 212 ISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIG 271

Query: 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM-----------H 286
            + N+ +  S + +Y R G   +A  +F+ M + ++I W AMISGY              
Sbjct: 272 CETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQAR 331

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
             G +A+ +F  ++   ++P+  TF ++LS C+    +++G ++ A   +  G L  V  
Sbjct: 332 SRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKS-GFLSDVVV 390

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA--VWTAMLGACKMHKNFDLGVEVAEH-- 402
           +  +V+++ + G + +A K       E P      WT+M+     H      +++ E   
Sbjct: 391 NSALVNMYNKCGCIQDANK----AFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMR 446

Query: 403 LLSVEPENPGHYVMLSNIYALAGRMDRVE 431
           L  V P N   +V L +  + AG ++  E
Sbjct: 447 LAGVRP-NEITFVSLLSACSYAGLVEEAE 474


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/488 (39%), Positives = 297/488 (60%), Gaps = 12/488 (2%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M    I P+++T+S ++ +   +S   +    H       Y     V  AL++ Y K  N
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPFEM----HAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           VD A KVF R+ +K +VAW++MI GY Q G  + A+ +F  M    + P+  T   ++ A
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINA 116

Query: 217 CAQ-LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
           CA     ++ G+ +H + +    +  + ++++L+ MY++ G++  A E+F    E ++++
Sbjct: 117 CAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVS 176

Query: 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           W ++ISGY  HGYG +A+E+F  M+   +  + VTF+ V+SAC H GL  EG R F  M 
Sbjct: 177 WNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMV 236

Query: 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA---VWTAMLGACKMHKN 392
           +++ + P +EH+ CMVDL+GRAG+L +A     ++I E P PA   VW  +L A  +H+N
Sbjct: 237 KDHHIEPRMEHYSCMVDLYGRAGMLVKAM----EIINEMPFPASANVWRTLLAASCIHRN 292

Query: 393 FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVE 452
            ++G   A+ L+S++P+NP  YV+L+N+YA  G       VR +M +K +KK  GYS +E
Sbjct: 293 LEVGKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIE 352

Query: 453 VDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYH 512
           V  K Y F  GD SHP +N+IY  L+EL  + + AGY P++     +++EE +E  L  H
Sbjct: 353 VKNKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAILSQH 412

Query: 513 SEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRG 572
           SE+LA+AFGL+ T PG  ++IVKNLR+C DCHS IK IS+   R+I+VRD  RFHHFK G
Sbjct: 413 SERLAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFKGG 472

Query: 573 SCSCLDYW 580
            CSC DYW
Sbjct: 473 LCSCGDYW 480



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 149/287 (51%), Gaps = 8/287 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           +P+   Y  IL A P + P + +HA  I   Y +S S+ T LL      G +  A ++F 
Sbjct: 7   KPNDFTYSTILTAQPGVSPFE-MHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQ 65

Query: 65  CIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI-LN 123
            I   D   ++ +I   ++   +  ++  + +M    I P+ YTFS +I +CA  +  + 
Sbjct: 66  RIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVE 125

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
            G+ +H     S +++ L V +AL+  Y+K  +++ A +VF R  ++ +V+WNS+ISGY 
Sbjct: 126 QGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYA 185

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNV 242
           Q+G+ ++A+ +F  M+   +  D  T + V++AC   G  + G R+    +    ++  +
Sbjct: 186 QHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRM 245

Query: 243 VLATSLINMYARCGNVSKAREIFDMM---SELNVIAWTAMISGYGMH 286
              + ++++Y R G + KA EI + M   +  NV  W  +++   +H
Sbjct: 246 EHYSCMVDLYGRAGMLVKAMEIINEMPFPASANV--WRTLLAASCIH 290


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 314/501 (62%), Gaps = 6/501 (1%)

Query: 85  NFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
           N +T+++  +  MI   ++ P+++TFS+  K+C +LS   +G+ V    F  G  S+  V
Sbjct: 351 NLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSV 410

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             ++++ + KS+ ++ A++ F+ + +K++V++N+ + G  +N   ++A  L + + +  +
Sbjct: 411 ANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITEREL 470

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
              + T   +L+  A +G I  G  +H  +V  GL  N  +  +LI+MY++CG++  A  
Sbjct: 471 GVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASR 530

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +F+ M   NVI+WT+MI+G+  HG+    +E F++M   GV+PN VT+VA+LSAC+H GL
Sbjct: 531 VFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGL 590

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           V EG R F SM +++ + P +EH+ CMVDL  RAGLL +A++F+ + +  +    VW   
Sbjct: 591 VSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFI-NTMPFQADVLVWRTF 649

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           LGAC++H N +LG   A  +L ++P  P  Y+ LSNIYA AG+ +    +R  M ++ L 
Sbjct: 650 LGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLV 709

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K  G S +EV  K + F +GD +HPN ++IY  LD L+   +  GYVP+++  +H+LEEE
Sbjct: 710 KEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEE 769

Query: 504 EREYS----LRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
             E      L  HSEK+A+AFGL+ TS    +R+ KNLR+C DCH+A+K+IS  + REI+
Sbjct: 770 NDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIV 829

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           +RD  RFHHFK G CSC DYW
Sbjct: 830 LRDLNRFHHFKDGKCSCNDYW 850



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 206/415 (49%), Gaps = 20/415 (4%)

Query: 8   SPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFF 64
           S  + ++LK+  R +     + VHA LI         +   L+SL   +G    A+ +F 
Sbjct: 62  SVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFE 121

Query: 65  CI---PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            +      D   ++ ++          D++  +   +   + P++Y ++AVI++C++   
Sbjct: 122 TMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDF 181

Query: 122 LNLGRAVHCHVFVSG-YDSDLHVQAALVNFYAK-SNNVDVARKVFDRMPDKSVVAWNSMI 179
           + +GR     +  +G ++SD+ V  +L++ + K  N+ + A KVFD+M + +VV W  MI
Sbjct: 182 VGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMI 241

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           +   Q GF +EAI  F  M   G   D  T   V +ACA+L ++ LG+ +H + +  GL 
Sbjct: 242 TRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLV 301

Query: 240 VNVVLATSLINMYARC---GNVSKAREIFDMMSELNVIAWTAMISGYGMH-GYGTEAVEL 295
            +V    SL++MYA+C   G+V   R++FD M + +V++WTA+I+GY  +    TEA+ L
Sbjct: 302 DDV--ECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINL 359

Query: 296 FHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
           F  M   G V PN+ TF +   AC +    + G +V     +  GL         ++ +F
Sbjct: 360 FSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR-GLASNSSVANSVISMF 418

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK---MHKNFDLGVEVAEHLLSV 406
            ++  + +A +  +  + EK   +  T + G C+     + F L  E+ E  L V
Sbjct: 419 VKSDRMEDAQRAFES-LSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGV 472



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 15/211 (7%)

Query: 186 GFAKEAIGLFNLMRDFGVNP-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           G  + A+   +LM   G+ P DS T   +L +C +  D  LG+ VH  ++   ++ + VL
Sbjct: 40  GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVL 99

Query: 245 ATSLINMYARCGNVSKAREIFDMMSEL---NVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             SLI++Y++ G+ +KA ++F+ M      +V++W+AM++ YG +G   +A+++F     
Sbjct: 100 YNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLE 159

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC----MVDLFGRA 357
            G+ PN+  + AV+ AC+++  V  G RV      + G     E  VC    ++D+F + 
Sbjct: 160 LGLVPNDYCYTAVIRACSNSDFVGVG-RVTLGFLMKTGHF---ESDVCVGCSLIDMFVKG 215

Query: 358 -GLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
                 AYK V D + E      WT M+  C
Sbjct: 216 ENSFENAYK-VFDKMSELNV-VTWTLMITRC 244



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/101 (21%), Positives = 54/101 (53%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H+ ++  G   ++ +   L+S+    G I  A R+F  + + +   + ++I   +K 
Sbjct: 494 EQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKH 553

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
            F+   L  + +MI   + P+  T+ A++ +C+H+ +++ G
Sbjct: 554 GFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEG 594


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/580 (35%), Positives = 322/580 (55%), Gaps = 5/580 (0%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + A+L A   L      QQVH  ++   +  +  +   LL        +    +
Sbjct: 238 KPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGK 297

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  D   +N +I   +      +S   +R++  +      + F+ ++        
Sbjct: 298 LFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLN 357

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L +GR +HC     G + +  V+ ALV+ YAK N    A+K+FD +  KS V W +MIS 
Sbjct: 358 LRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISA 417

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y Q G  +E I +F+ MR  GV  D  T   +L ACA L  I LGR +H  ++  G   N
Sbjct: 418 YVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSN 477

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V   ++L++ YA+CG ++ A + F  M E N ++W A+IS Y  +G     +  F +M  
Sbjct: 478 VYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQ 537

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G +P++V+F++VLSAC+H G V+E    F SM Q Y + P  EH+  MVD+  R G  +
Sbjct: 538 SGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFD 597

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP-ENPGHYVMLSNI 420
           EA K + ++  E P+  +W+++L +C++HKN +L  + A+ L ++E   +   Y+ +SNI
Sbjct: 598 EAEKLMTEMPFE-PSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNI 656

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           YA+AG+ D V  V+  M  +G++K   YS VE+  + ++FS  DKSHP   +I + ++ L
Sbjct: 657 YAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINAL 716

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
                + GY P++  A+H+++E  +  SL+YHSE+ A+AF LM T  G  I ++KNLR C
Sbjct: 717 SKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRAC 776

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH+AIK IS    REIIVRD  RFHHFK G CSC DYW
Sbjct: 777 TDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 182/371 (49%), Gaps = 7/371 (1%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           Q+H H+I  GY  +  +   L+   C    +  A ++F  + + D+  FN+L+   S   
Sbjct: 161 QIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEG 220

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
            + +++  +  +  S I PS++TF+A++ +   L     G+ VH  V  + +  ++ V  
Sbjct: 221 LNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGN 280

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           AL+++Y+K + VD   K+F  MP+   +++N +I+ Y  NG  KE+  LF  ++    + 
Sbjct: 281 ALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDR 340

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
                  +L+      ++ +GR +H   +  G +    +  +L++MYA+C    +A++IF
Sbjct: 341 RQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIF 400

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           D ++  + + WTAMIS Y   G   E + +F  MR  GV  +  TF ++L ACA+   + 
Sbjct: 401 DNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASIS 460

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA--PAVWTAM 383
            G R   S+    G +  V     ++D + + G + +A K      GE P      W A+
Sbjct: 461 LG-RQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIK----SFGEMPERNSVSWNAL 515

Query: 384 LGACKMHKNFD 394
           + A   + N D
Sbjct: 516 ISAYAQNGNVD 526



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 174/376 (46%), Gaps = 8/376 (2%)

Query: 27  VHAHLIVAGYGRSRSM-LTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           VHAH +        ++ L  ++S     G ++ A+ +F  +    +  +  LI    ++N
Sbjct: 60  VHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSN 119

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
            S ++   Y  M    I P   T   ++     L   N+   +H HV   GY+ +L V  
Sbjct: 120 QSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCN 179

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           +LV+ Y K++ + +A ++F  M +K  V +NS+++GY   G  +EAI LF  + + G+ P
Sbjct: 180 SLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKP 239

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
              T   +L+A   L D   G+ VH F++      NV +  +L++ Y++   V +  ++F
Sbjct: 240 SDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLF 299

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
             M EL+ I++  +I+ Y  +G   E+ +LF +++          F  +LS    +  ++
Sbjct: 300 XEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLR 359

Query: 326 EGHRVFASMRQEYGLLPGVEHHV--CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
            G ++     Q   +    E  V   +VD++ +     EA K   ++  +   P  WTAM
Sbjct: 360 MGRQIHC---QAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVP--WTAM 414

Query: 384 LGACKMHKNFDLGVEV 399
           + A       + G+ V
Sbjct: 415 ISAYVQKGKHEEGINV 430



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 113/240 (47%), Gaps = 31/240 (12%)

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP------------- 168
           LN    +  H+  +G++ +       VN + +  ++  A +VFD+MP             
Sbjct: 24  LNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISG 83

Query: 169 ------------------DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
                             +++ V+W  +I GY Q+  +KEA  L+  MR  G+ PD  T 
Sbjct: 84  HLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTL 143

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
           V +L+   +L   ++   +H  ++  G + N+++  SL++ Y +   +  A ++F  M  
Sbjct: 144 VTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLN 203

Query: 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330
            + + + ++++GY   G   EA+ELF  +   G++P++ TF A+LSA       + G +V
Sbjct: 204 KDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQV 263


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/570 (37%), Positives = 327/570 (57%), Gaps = 62/570 (10%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ- 60
           +P+S  +  +LK+  ++   Q   Q+H H++  G      + T L+++    G + YA+ 
Sbjct: 129 EPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAEL 188

Query: 61  ------------------------------RIFFCIPSPDSFLFNTLIIRNSKANFSTDS 90
                                         R+F  IP  D+  +N +I   +++    ++
Sbjct: 189 VFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEA 248

Query: 91  LLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNF 150
           L F++ M  +N++P+  T   V+ +CA    L LG  V   +   G  S+L +  AL++ 
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
           Y+K  ++D AR +F+ + +K +++WN MI GY      KEA+ LF  M+   V P+  T 
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDV-NVVLATSLINMYARCGNVSKAREIFDMMS 269
           V +L ACA LG +DLG+W+H +I  + L + N  L TSLI+MYA+CGN+  A+++F  M 
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329
             ++ +W AMISG  MHG+   A+ELF +MR  G  P+++TFV VLSAC+HAGLV+ G +
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488

Query: 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389
            F+SM ++Y + P ++H+ CM+DL GRAGL +EA   +K+ +  KP  A+W ++LGAC++
Sbjct: 489 CFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKN-MEMKPDGAIWGSLLGACRV 547

Query: 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYS 449
           H N +LG   A+HL  +EPENPG YV+LSNIYA AGR D V  +R  +  KG+KK     
Sbjct: 548 HGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK----- 602

Query: 450 TVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE-AGYVPESESAMHELEEEEREYS 508
                                 +IY+ LDE+     E  G VP++   +++++EE +E S
Sbjct: 603 --------------------XQDIYKMLDEIDQSFGERPGXVPDTSEVLYDMDEEWKEGS 642

Query: 509 LRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
           L +HSEKLA+AFGL+ T P  TIRIVKNLR
Sbjct: 643 LSHHSEKLAIAFGLISTKPETTIRIVKNLR 672



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 241/451 (53%), Gaps = 48/451 (10%)

Query: 5   QPHSPAYEAILKAGPRL---------KPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDA 53
           QP S     +L+  P L         + L+Q+H+ +I  G   ++  L+KL+    +   
Sbjct: 20  QPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPF 79

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G ++YA  +F  I  P+ F++NT+I  NS ++    ++ FY RM++  + P++YTF  ++
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV---------------- 157
           KSCA +     G+ +H HV   G +SD  V  +L+N YA++  +                
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 158 ---------------DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
                          D AR++F+ +P +  V+WN+MI+GY Q+G  +EA+  F  M+   
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           V P+ +T V VL+ACAQ G ++LG WV  +I   GL  N+ L  +LI+MY++CG++ KAR
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR 319

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           ++F+ + E ++I+W  MI GY       EA+ LF +M+   V PN+VTFV++L ACA+ G
Sbjct: 320 DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLG 379

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP-AVWT 381
            +  G  + A + +++  L        ++D++ + G + EA K V    G KP     W 
Sbjct: 380 ALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNI-EAAKQV--FAGMKPKSLGSWN 436

Query: 382 AMLGACKMHKNFDLGVEVAEHLLS--VEPEN 410
           AM+    MH + ++ +E+   +     EP++
Sbjct: 437 AMISGLAMHGHANMALELFRQMRDEGFEPDD 467


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/553 (37%), Positives = 318/553 (57%), Gaps = 1/553 (0%)

Query: 28  HAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFS 87
           H  +I        ++L  L++     GF+  A+++F  +       +NT+I   ++    
Sbjct: 84  HGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRME 143

Query: 88  TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL 147
           +++L  +  M       S +T S+V+ +C         + +HC    +  D +L+V  AL
Sbjct: 144 SEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTAL 203

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
           ++ YAK   +  A +VF+ M DKS V W+SM++GY QN   +EA+ L+   +   +  + 
Sbjct: 204 LDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQ 263

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
            T   V+ AC+ L  +  G+ +H  I   G   NV +A+S ++MYA+CG++ ++  IF  
Sbjct: 264 FTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSE 323

Query: 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG 327
           + E N+  W  +ISG+  H    E + LF +M+  G+ PN VTF ++LS C H GLV+EG
Sbjct: 324 VQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEG 383

Query: 328 HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
            R F  MR  YGL P V H+ CMVD+ GRAGLL+EAY+ +K +  + P  ++W ++L +C
Sbjct: 384 RRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFD-PTASIWGSLLASC 442

Query: 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVG 447
           +++KN +L    AE L  +EPEN G++V+LSNIYA   + + +   R ++    +KK  G
Sbjct: 443 RVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRG 502

Query: 448 YSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREY 507
            S +++  K + FS+G+  HP   EI   LD L+ + R+ GY P  E  +H++E  ++E 
Sbjct: 503 KSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEE 562

Query: 508 SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFH 567
            L  HSEKLAL FGLM       +RI+KNLR+CVDCH  +K  S+AT R IIVRD  RFH
Sbjct: 563 LLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFH 622

Query: 568 HFKRGSCSCLDYW 580
           HF  G CSC D+W
Sbjct: 623 HFSDGHCSCGDFW 635



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 153/297 (51%), Gaps = 11/297 (3%)

Query: 102 ISPSNYT--FS------AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153
           +SP  Y+  FS       +++ CA    +   +A H  +     + D+ +   L+N Y+K
Sbjct: 49  VSPGRYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSK 108

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
              V++AR+VFD M ++S+V+WN+MI  Y +N    EA+ +F  MR+ G      T   V
Sbjct: 109 CGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSV 168

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
           L+AC    D    + +H   V   +D+N+ + T+L+++YA+CG +  A ++F+ M + + 
Sbjct: 169 LSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSS 228

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
           + W++M++GY  +    EA+ L+ R +   +  N  T  +V+ AC++   + EG ++ A 
Sbjct: 229 VTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAV 288

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           + +  G    V      VD++ + G L E+Y    +V  ++    +W  ++     H
Sbjct: 289 ICKS-GFGSNVFVASSAVDMYAKCGSLRESYIIFSEV--QEKNLELWNTIISGFAKH 342



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/159 (18%), Positives = 75/159 (47%), Gaps = 2/159 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+HA +  +G+G +  + +  + +    G +  +  IF  +   +  L+NT+I   +K 
Sbjct: 283 KQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKH 342

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS-GYDSDLHV 143
               + ++ + +M    + P+  TFS+++  C H  ++  GR     +  + G   ++  
Sbjct: 343 ARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVH 402

Query: 144 QAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMISG 181
            + +V+   ++  +  A ++   +P D +   W S+++ 
Sbjct: 403 YSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 441


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/571 (35%), Positives = 323/571 (56%), Gaps = 19/571 (3%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH + I  G     SM   L SL    G +  A R F+ IP  +   + T+I   ++ 
Sbjct: 199 KQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAED 258

Query: 85  NFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
               +  +  +  M++  + P+ +T ++V+  C     LNLG+ V    F  G +++L V
Sbjct: 259 EECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPV 318

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ-------------NGFAKE 190
           + + +  Y +    D A ++F++M D S++ WN+MISGY Q              GF  +
Sbjct: 319 KNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGF--Q 376

Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
           A+ +F  ++   + PD  T   +L+ C+ +  ++ G  +H   +  G   +VV+ ++L+N
Sbjct: 377 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVN 436

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MY +CG +  A + F  M     + WT+MISGY  HG   EA++LF  MR  GVRPN +T
Sbjct: 437 MYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEIT 496

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
           FV++LSAC++AGLV+E    F  M++EY + P V+H+ CM+D+F R G + +A+ F+K  
Sbjct: 497 FVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRT 556

Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
            G +P  A+W++++  C+ H N +L    A+ LL ++P+    Y++L N+Y    R   V
Sbjct: 557 -GFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDV 615

Query: 431 EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
             VR +M Q+ +      S + +  K Y F   D++HP   E+YQ L+ L+ + +  GY 
Sbjct: 616 ARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYE 675

Query: 491 PESESAMHELEEEEREY--SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIK 548
           P   + + + E++E+    SL++HSE+LA+A GL++T PG T+R+ KN+ MC DCHS+IK
Sbjct: 676 PYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIK 735

Query: 549 FISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
             S+  NREIIVRD  R H FK G CSC D+
Sbjct: 736 LFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 196/427 (45%), Gaps = 22/427 (5%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L   + VH H+   G      + T L++          A+R+F  +P  +   +  L+  
Sbjct: 94  LGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTG 153

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
            +  +     L  +  M+     PS+YT  A + +C     ++LG+ VH +    G +S 
Sbjct: 154 YTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESI 213

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE-AIGLFNLMR 199
             +  +L + YAK  ++D A + F R+P+K+V+ W +MIS   ++    E  + LF  M 
Sbjct: 214 TSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDML 273

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             GV P+  T   V++ C    D++LG+ V  F    G + N+ +  S + +Y R G   
Sbjct: 274 MDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETD 333

Query: 260 KAREIFDMMSELNVIAWTAMISGYGM-----------HGYGTEAVELFHRMRAHGVRPNN 308
           +A  +F+ M + ++I W AMISGY                G +A+ +F  ++   ++P+ 
Sbjct: 334 EAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDL 393

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368
            TF ++LS C+    +++G ++ A   +  G L  V  +  +V+++ + G + +A K   
Sbjct: 394 FTFSSILSVCSAMMALEQGEQIHAQTIKS-GFLSDVVVNSALVNMYNKCGCIQDANK--- 449

Query: 369 DVIGEKPAPA--VWTAMLGACKMHKNFDLGVEVAEH--LLSVEPENPGHYVMLSNIYALA 424
               E P      WT+M+     H      +++ E   L  V P N   +V L +  + A
Sbjct: 450 -AFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRP-NEITFVSLLSACSYA 507

Query: 425 GRMDRVE 431
           G ++  E
Sbjct: 508 GLVEEAE 514



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 138/293 (47%), Gaps = 12/293 (4%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M+    +  +  +  ++  C     L   RAVH H+  +G  +D+ V  +LVN Y + + 
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSA 128

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
              AR++FD MP+++VV W ++++GY  N      + +F  M + G  P   T    L A
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C    D+DLG+ VH + +  G +    +  SL ++YA+ G++  A   F  + E NVI W
Sbjct: 189 CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITW 248

Query: 277 TAMISGYGMHGYGTE-AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335
           T MIS         E  + LF  M   GV PN  T  +V+S C     +  G +V     
Sbjct: 249 TTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQV----- 303

Query: 336 QEYGLLPGVEHHVCMVD----LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           Q +    G E ++ + +    L+ R G  +EA +  + +  E  +   W AM+
Sbjct: 304 QAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQM--EDASIITWNAMI 354


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/615 (35%), Positives = 343/615 (55%), Gaps = 41/615 (6%)

Query: 5   QPHSPAYEAILKA----GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           +P  P + A  KA    G  L+ +++VH      G      +   L+        +  A+
Sbjct: 75  KPDMPVFLAAAKACAVSGDALR-VKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGAR 133

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           R+F  +   D   + +L     K  F    +  +R M  S + P+  T S+++ +CA L 
Sbjct: 134 RVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELK 193

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L  G+ +H      G   +L V +ALV+ YAK  +V  AR VFD MP + VV+WN +++
Sbjct: 194 DLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLT 253

Query: 181 GY-----------------------------------EQNGFAKEAIGLFNLMRDFGVNP 205
            Y                                    +NG ++EA+ +F  M+  G  P
Sbjct: 254 AYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKP 313

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           +  T   +L AC+   ++ +G+ +H ++       ++   T+L+ MYA+CG+++ +R +F
Sbjct: 314 NEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVF 373

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
           DMM   +V+AW  MI    MHG G EA+ LF +M    V+PN+VTF  VLS C+H+ LV+
Sbjct: 374 DMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVE 433

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           EG ++F SM +++ + P   H+ C+VD++ RAG LNEAYKF++ +  E P  + W A+L 
Sbjct: 434 EGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPME-PTASAWGALLA 492

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           AC+++KN +L    A+ L  +EP NPG+YV L NI   A        VR +M ++G+ K 
Sbjct: 493 ACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKT 552

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
            G S ++V  K + F +GDKS+  +++IY +LDEL+ + + AGY P+++  + ++++EE+
Sbjct: 553 PGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEK 612

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
             SL  HSEKLA+AFG++  +   TIR+ KNLR+C DCH+AIK++S      I+VRD LR
Sbjct: 613 AESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLR 672

Query: 566 FHHFKRGSCSCLDYW 580
           FHHFK G+CSC D W
Sbjct: 673 FHHFKNGNCSCKDLW 687



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 156/298 (52%), Gaps = 1/298 (0%)

Query: 45  KLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP 104
           +L+ +  + G    A+++F  IP PD    +TLI   +    S +++  Y  +    I P
Sbjct: 17  RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKP 76

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
               F A  K+CA        + VH      G  SD+ V  AL++ Y K   V+ AR+VF
Sbjct: 77  DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 136

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           D +  + VV+W S+ S Y + GF ++ + +F  M   GV P+  T   +L ACA+L D+ 
Sbjct: 137 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 196

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
            G+ +H F V  G+ VN+ + ++L+++YA+C +V +AR +FD+M   +V++W  +++ Y 
Sbjct: 197 SGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 256

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
            +    +   LF +M   GVR +  T+ AV+  C   G  +E   +F  M Q+ G  P
Sbjct: 257 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKM-QKMGFKP 313



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 130/257 (50%), Gaps = 7/257 (2%)

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
           H+   L+       + + AR++FD +P       +++IS    +G + EAI +++ +++ 
Sbjct: 13  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 72

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G+ PD    +    ACA  GD    + VH+     G+  +V +  +LI+ Y +C  V  A
Sbjct: 73  GIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGA 132

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
           R +FD +   +V++WT++ S Y   G+  + +++F  M   GV+PN +T  ++L ACA  
Sbjct: 133 RRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAEL 192

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
             ++ G  +       +G++  V   VC  +V L+ +   + EA + V D++  +   + 
Sbjct: 193 KDLKSGKEIHG-FAVRHGMV--VNLFVCSALVSLYAKCLSVREA-RMVFDLMPHRDVVS- 247

Query: 380 WTAMLGACKMHKNFDLG 396
           W  +L A   +K ++ G
Sbjct: 248 WNGVLTAYFKNKEYEKG 264


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/583 (35%), Positives = 327/583 (56%), Gaps = 11/583 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + A+L A   L  +   QQ+H+ +I   +  +  +   LL        +  A++
Sbjct: 247 KPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARK 306

Query: 62  IFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           +F  +P  D   +N +I     + K  ++ D    +R +  +      + F+ ++   ++
Sbjct: 307 LFDEMPEQDGVSYNVIISGYAWDGKHKYAFD---LFRELQFTAFDRKQFPFATMLSIASN 363

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
                +GR +H    V+  DS++ V  +LV+ YAK    + A  +F  +  +S V W +M
Sbjct: 364 TLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAM 423

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           IS Y Q GF +E + LFN MR   V  D  T   +L A A +  + LG+ +H FI+  G 
Sbjct: 424 ISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGF 483

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             NV   ++L+++YA+CG++  A + F  M + N+++W AMIS Y  +G     ++ F  
Sbjct: 484 MSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKE 543

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M   G++P++V+F+ VLSAC+H+GLV+EG   F SM Q Y L P  EH+  +VD+  R+G
Sbjct: 544 MVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSG 603

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP-ENPGHYVML 417
             NEA K + ++  + P   +W+++L AC++HKN +L    A+ L ++E   +   YV +
Sbjct: 604 RFNEAEKLMAEMPID-PDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNM 662

Query: 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL 477
           SNIYA AG+ + V  V   M  +G+KK   YS VE+  + ++FS  D+ HP   EI + +
Sbjct: 663 SNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKI 722

Query: 478 DELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNL 537
           D L     E GY P++  A+H  +E+ +  SL+YHSE+LA+AF L+ T  G  I ++KNL
Sbjct: 723 DMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNL 782

Query: 538 RMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R C+DCH+AIK IS    REI VRD  RFHHF+ G CSC D+W
Sbjct: 783 RACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 185/365 (50%), Gaps = 7/365 (1%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           + QV   +I  GY     +   L+   C +  +  A ++F  +P  DS  +N +I   SK
Sbjct: 168 ITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSK 227

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
                 ++  +  M  S + P+ +TF+AV+ +   L  + LG+ +H  V  + +  ++ V
Sbjct: 228 DGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFV 287

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             AL++FY+K ++V  ARK+FD MP++  V++N +ISGY  +G  K A  LF  ++    
Sbjct: 288 SNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAF 347

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           +        +L+  +   D ++GR +H   +    D  +++  SL++MYA+CG   +A  
Sbjct: 348 DRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEM 407

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           IF  ++  + + WTAMIS Y   G+  E ++LF++MR   V  +  TF ++L A A    
Sbjct: 408 IFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIAS 467

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WT 381
           +  G ++ + + +  G +  V     ++D++ + G + +A +       E P   +  W 
Sbjct: 468 LSLGKQLHSFIIKS-GFMSNVFSGSALLDVYAKCGSIKDAVQ----TFQEMPDRNIVSWN 522

Query: 382 AMLGA 386
           AM+ A
Sbjct: 523 AMISA 527



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 179/376 (47%), Gaps = 23/376 (6%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           V  +++++GY +S              G +  A+++F  +    +  +  LI   S+ N 
Sbjct: 84  VSTNMMISGYVKS--------------GNLGEARKLFDGMVERTAVTWTILIGGYSQLNQ 129

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             ++   + +M      P   TF  ++  C    + N    V   +   GYDS L V   
Sbjct: 130 FKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNT 189

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           LV+ Y KSN +D+A ++F  MP+   V++N+MI+GY ++G  ++A+ LF  M++ G+ P 
Sbjct: 190 LVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPT 249

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T   VL A   L DI LG+ +H F++      NV ++ +L++ Y++  +V  AR++FD
Sbjct: 250 EFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFD 309

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M E + +++  +ISGY   G    A +LF  ++          F  +LS  ++    + 
Sbjct: 310 EMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEM 369

Query: 327 GHRVFAS---MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           G ++ A       +  +L G      +VD++ + G   EA     ++      P  WTAM
Sbjct: 370 GRQIHAQTIVTTADSEILVGNS----LVDMYAKCGKFEEAEMIFTNLTHRSAVP--WTAM 423

Query: 384 LGACKMHKNFDLGVEV 399
           + A      ++ G+++
Sbjct: 424 ISAYVQKGFYEEGLQL 439



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 126/272 (46%), Gaps = 45/272 (16%)

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI---LNLGRAVHCHVFVSGYDSDLH 142
           F T SLL +  ++  N+S    TF   +KS +  S    LN+   +   +  +G+D D  
Sbjct: 3   FQTTSLLLW--VMKKNVS----TF---LKSSSLQSPKLRLNVVNNIDARIVKTGFDPDTS 53

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA-------------- 188
                V  + K+  +  AR++F++MP K+ V+ N MISGY ++G                
Sbjct: 54  RSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERT 113

Query: 189 -----------------KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
                            KEA  LF  M+  G  PD  T V +L+ C      +    V  
Sbjct: 114 AVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQT 173

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291
            I+  G D  +++  +L++ Y +   +  A ++F  M E++ +++ AMI+GY   G   +
Sbjct: 174 QIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEK 233

Query: 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           AV LF  M+  G++P   TF AVL  CA+ GL
Sbjct: 234 AVNLFVEMQNSGLKPTEFTFAAVL--CANIGL 263


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/626 (35%), Positives = 342/626 (54%), Gaps = 68/626 (10%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLL--SLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           L+ L Q+H   I +G       + KL+    +  +  + YA+R+  C P PD+F+FNTL+
Sbjct: 185 LRALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLV 244

Query: 79  IRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHC------- 130
              S+++   +S+  +  M+    I P +++F+ V+K+ A+   L  G  +HC       
Sbjct: 245 RGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGL 304

Query: 131 --HVFVSGYDSDLHVQAALVNF-------------------------------------- 150
             H+FV+     ++ +   V F                                      
Sbjct: 305 DSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDK 364

Query: 151 ---------------YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
                          Y K+  ++ A+++F  MP +  V+W++MI G+  NG   E+   F
Sbjct: 365 MLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYF 424

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             +    + P+  +   VL+AC+Q G  + G+ +H F+   G    V +  +LI+MY+RC
Sbjct: 425 RELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRC 484

Query: 256 GNVSKAREIFDMMSE-LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           GNV  AR +F+ M E  ++++WT+MI+G  MHG+G EA+ +F+ M   GV P+ ++F+++
Sbjct: 485 GNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISL 544

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L AC+HAGL++EG   F+ M++ Y + P VEH+ CMVDL+GR+G L +AY F+   +   
Sbjct: 545 LYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQ-MPIP 603

Query: 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434
           P   VW  +LGAC  H N +L  +V + L  ++P N G  V+LSN+YA AG+   V  +R
Sbjct: 604 PTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIR 663

Query: 435 NIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR-EAGYVPES 493
             MI + +KK   +S VEV +  Y F+  +K      E ++ L E++ R R EAGY PE 
Sbjct: 664 KSMIVQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGYAPEV 723

Query: 494 ESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVA 553
            SA++++EEEE+E  +  HSEKLALAF L R   G  IRIVKNLR+C DCH+ +K  S  
Sbjct: 724 ASALYDVEEEEKEDQVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMKLTSRV 783

Query: 554 TNREIIVRDRLRFHHFKRGSCSCLDY 579
              EI++RDR RFH FK GSCSC DY
Sbjct: 784 YGVEIVIRDRNRFHSFKDGSCSCGDY 809


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/406 (46%), Positives = 267/406 (65%), Gaps = 2/406 (0%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L+  YA++  V  AR +FD MP ++ V+W++M++GY Q G  +EA+GLF  M+  GV PD
Sbjct: 283 LITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPD 342

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
            T  V VLAACAQLG ++ G+WVH ++    + + V L T+L++MYA+CG +  A E+F 
Sbjct: 343 DTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFK 402

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
           +M E NV+AWT MI G  MHG G+EA+ELF +M   GV+P+++ F+  L AC H GLV +
Sbjct: 403 VMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDK 462

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G  +F SM ++YG+ P +EH+ CMVDL  R GLLNEA + V+  +  KP   +W A++  
Sbjct: 463 GRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEK-MPMKPDALIWGALMAG 521

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C+ HKN +L   V +H + +EP+  G YV+L NIYA +GR      +R++M +KG+ K  
Sbjct: 522 CRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTP 581

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR-EAGYVPESESAMHELEEEER 505
           G STVE+    + F +GD SHP   EI    DE+  R R E GYVP+ +  + ++EEEE+
Sbjct: 582 GCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEK 641

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFIS 551
           E +L  HSEK+A+AF L+ TS  M IRIVKNLR+C DCH   K IS
Sbjct: 642 ENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLIS 687



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 130/248 (52%), Gaps = 2/248 (0%)

Query: 41  SMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS 100
           S    L++    AG +T A+ +F  +P+ ++  ++ ++    +A    ++L  + RM   
Sbjct: 278 STFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQAD 337

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
            + P +     V+ +CA L +L  G+ VH ++  +     + +  ALV+ YAK   + +A
Sbjct: 338 GVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLA 397

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
            +VF  M +K+V+AW +MI G   +G   EA+ LF+ M   GV PD    +  L AC   
Sbjct: 398 MEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHT 457

Query: 221 GDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTA 278
           G +D GR + + +V + G+   +     ++++ AR G +++ARE+ + M  + + + W A
Sbjct: 458 GLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGA 517

Query: 279 MISGYGMH 286
           +++G   H
Sbjct: 518 LMAGCRFH 525



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 126/244 (51%), Gaps = 27/244 (11%)

Query: 229 VHEFIVGQGLDVNVVLAT----------SLINMYARCGNVSKAREIFDMMSELNVIAWTA 278
           VH  I+G+  D  V+L T          +LI  YAR G V+ AR +FD M   N ++W+A
Sbjct: 254 VHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSA 313

Query: 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY 338
           M++GY   G G EA+ LF RM+A GVRP++   V VL+ACA  G++++G  V   ++   
Sbjct: 314 MVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKAN- 372

Query: 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398
            +   V     +VD++ + G +  A +  K V+ EK   A WT M+    MH      +E
Sbjct: 373 NIRITVFLGTALVDMYAKCGEMQLAMEVFK-VMKEKNVLA-WTTMIKGLAMHGRGSEALE 430

Query: 399 VAEHL--LSVEPENPGHYVMLSNIYAL-----AGRMDRVEVVRNIMIQK-GLKKHVGYST 450
           +   +  L V+P++      ++ I AL      G +D+   + + M++K G+K  + +  
Sbjct: 431 LFSQMERLGVKPDD------IAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYG 484

Query: 451 VEVD 454
             VD
Sbjct: 485 CMVD 488


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 311/556 (55%), Gaps = 1/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H  +I A       +   L+ +     F+  A ++F  +   D  L+N LI   S  
Sbjct: 230 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHG 289

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++   +  +    +  +  T +AV+KS A L   +  R VH      G+  D HV 
Sbjct: 290 GRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVV 349

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             L++ Y K + +  A +VF+      ++A  SMI+   Q    + AI LF  M   G+ 
Sbjct: 350 NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLE 409

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD      +L ACA L   + G+ VH  ++ +    +     +L+  YA+CG++  A   
Sbjct: 410 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELA 469

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  + E  V++W+AMI G   HG+G  A+ELF RM   G+ PN++T  +VL AC HAGLV
Sbjct: 470 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 529

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            E  R F SM++ +G+    EH+ CM+DL GRAG L++A + V  +  +  A +VW A+L
Sbjct: 530 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANA-SVWGALL 588

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GA ++HK+ +LG   AE L  +EPE  G +V+L+N YA +G  + V  VR +M    +KK
Sbjct: 589 GASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKK 648

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
               S VEV  K + F +GDKSHP T EIY  LDEL     +AGY+P  +  +H+L+  E
Sbjct: 649 EPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSE 708

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E  L +HSE+LA+AF L+ T PG  IR+ KNLR+C DCH A KFIS   +REII+RD  
Sbjct: 709 KELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDIN 768

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF+ G+CSC DYW
Sbjct: 769 RFHHFRDGTCSCGDYW 784



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/535 (26%), Positives = 246/535 (45%), Gaps = 47/535 (8%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           A   +LK  P  +   QVHA  +  G+G    +   L+++    GF+  A+R+F    S 
Sbjct: 12  ALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSE 71

Query: 70  -DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
            ++  +N L+    K +   D++  +  M+ S I P+ + FS V+ +C     ++ GR V
Sbjct: 72  RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQV 131

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H  V   GY+ D+    ALV+ Y K   VD+A  +F++MPD  VV+WN++ISG   NG  
Sbjct: 132 HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 191

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
             AI L   M+  G+ P+      +L ACA  G  DLGR +H F++    D +  +   L
Sbjct: 192 HRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGL 251

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           ++MYA+   +  A ++FD MS  ++I W A+ISG    G   EA  +F+ +R  G+  N 
Sbjct: 252 VDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNR 311

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKF 366
            T  AVL + A         +V A + ++ G +   + HV   ++D + +   L++A + 
Sbjct: 312 TTLAAVLKSTASLEAASATRQVHA-LAEKIGFI--FDAHVVNGLIDSYWKCSCLSDAIRV 368

Query: 367 VK-----DVI----------------------------GEKPAPAVWTAMLGACKMHKNF 393
            +     D+I                            G +P P V +++L AC     +
Sbjct: 369 FEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAY 428

Query: 394 DLGVEVAEHLLS---VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL---KKHVG 447
           + G +V  HL+    +     G+ ++ +  YA  G ++  E+  + + ++G+      +G
Sbjct: 429 EQGKQVHAHLIKRQFMSDAFAGNALVYT--YAKCGSIEDAELAFSSLPERGVVSWSAMIG 486

Query: 448 YSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
                   K  L   G       N  +  +  ++  C  AG V E++   + ++E
Sbjct: 487 GLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 541


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 311/556 (55%), Gaps = 1/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H  +I A       +   L+ +     F+  A ++F  +   D  L+N LI   S  
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHG 382

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++   +  +    +  +  T +AV+KS A L   +  R VH      G+  D HV 
Sbjct: 383 GRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVV 442

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             L++ Y K + +  A +VF+      ++A  SMI+   Q    + AI LF  M   G+ 
Sbjct: 443 NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLE 502

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD      +L ACA L   + G+ VH  ++ +    +     +L+  YA+CG++  A   
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELA 562

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  + E  V++W+AMI G   HG+G  A+ELF RM   G+ PN++T  +VL AC HAGLV
Sbjct: 563 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 622

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            E  R F SM++ +G+    EH+ CM+DL GRAG L++A + V  +  +  A +VW A+L
Sbjct: 623 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANA-SVWGALL 681

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GA ++HK+ +LG   AE L  +EPE  G +V+L+N YA +G  + V  VR +M    +KK
Sbjct: 682 GASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKK 741

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
               S VEV  K + F +GDKSHP T EIY  LDEL     +AGY+P  +  +H+L+  E
Sbjct: 742 EPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSE 801

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E  L +HSE+LA+AF L+ T PG  IR+ KNLR+C DCH A KFIS   +REII+RD  
Sbjct: 802 KELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDIN 861

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF+ G+CSC DYW
Sbjct: 862 RFHHFRDGTCSCGDYW 877



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 141/535 (26%), Positives = 246/535 (45%), Gaps = 47/535 (8%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           A   +LK  P  +   QVHA  +  G+G    +   L+++    GF+  A+R+F    S 
Sbjct: 105 ALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSE 164

Query: 70  -DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
            ++  +N L+    K +   D++  +  M+ S I P+ + FS V+ +C     ++ GR V
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQV 224

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H  V   GY+ D+    ALV+ Y K   VD+A  +F++MPD  VV+WN++ISG   NG  
Sbjct: 225 HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
             AI L   M+  G+ P+      +L ACA  G  DLGR +H F++    D +  +   L
Sbjct: 285 HRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           ++MYA+   +  A ++FD MS  ++I W A+ISG    G   EA  +F+ +R  G+  N 
Sbjct: 345 VDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNR 404

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKF 366
            T  AVL + A         +V A + ++ G +   + HV   ++D + +   L++A + 
Sbjct: 405 TTLAAVLKSTASLEAASATRQVHA-LAEKIGFI--FDAHVVNGLIDSYWKCSCLSDAIRV 461

Query: 367 VK-----DVI----------------------------GEKPAPAVWTAMLGACKMHKNF 393
            +     D+I                            G +P P V +++L AC     +
Sbjct: 462 FEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAY 521

Query: 394 DLGVEVAEHLLS---VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL---KKHVG 447
           + G +V  HL+    +     G+ ++ +  YA  G ++  E+  + + ++G+      +G
Sbjct: 522 EQGKQVHAHLIKRQFMSDAFAGNALVYT--YAKCGSIEDAELAFSSLPERGVVSWSAMIG 579

Query: 448 YSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
                   K  L   G       N  +  +  ++  C  AG V E++   + ++E
Sbjct: 580 GLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 634



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 183/378 (48%), Gaps = 21/378 (5%)

Query: 17  AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNT 76
           A   L P   +HA+L+ +G+    S+   L+S          A+R+F  IP P    +++
Sbjct: 16  AAQALLPGAHLHANLLKSGF--LASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSS 73

Query: 77  LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
           L+   S       ++  +  M    +  + +    V+K    +    LG  VH     +G
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATG 130

Query: 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRM-PDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           + SD+ V  ALV  Y     +D AR+VFD    +++ V+WN ++S Y +N    +AI +F
Sbjct: 131 FGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVF 190

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             M   G+ P      CV+ AC    +ID GR VH  +V  G + +V  A +L++MY + 
Sbjct: 191 GEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKM 250

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G V  A  IF+ M + +V++W A+ISG  ++G+   A+EL  +M++ G+ PN     ++L
Sbjct: 251 GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSIL 310

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHH------VCMVDLFGRAGLLNEAYKFVKD 369
            ACA AG    G       RQ +G +            V +VD++ +   L++A K V D
Sbjct: 311 KACAGAGAFDLG-------RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMK-VFD 362

Query: 370 VIGEKPAPAVWTAMLGAC 387
            +  +    +W A++  C
Sbjct: 363 WMSHRDL-ILWNALISGC 379



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 188/415 (45%), Gaps = 41/415 (9%)

Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
           T S  +   A    L  G  +H ++  SG+ + L     L++FY+K      AR+VFD +
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHANLLKSGFLASLRNH--LISFYSKCRRPCCARRVFDEI 63

Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
           PD   V+W+S+++ Y  NG  + AI  F+ MR  GV  +      VL     + D  LG 
Sbjct: 64  PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQLGA 120

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM-SELNVIAWTAMISGYGMH 286
            VH   +  G   +V +A +L+ MY   G +  AR +FD   SE N ++W  ++S Y  +
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 180

Query: 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346
               +A+++F  M   G++P    F  V++AC  +  +  G +V A M    G    V  
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHA-MVVRMGYEKDVFT 239

Query: 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEK-PAPAV--WTAMLGACKMHKNFDLGVEVAEHL 403
              +VD++ + G ++     +  VI EK P   V  W A++  C ++ +    +E+   L
Sbjct: 240 ANALVDMYVKMGRVD-----IASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIEL---L 291

Query: 404 LSVEPEN--PGHYVMLSNIY---ALAGRMDRVEVVRNIMIQKGLKK--HVGYSTVEVDQK 456
           L ++     P  + MLS+I    A AG  D    +   MI+       ++G   V++  K
Sbjct: 292 LQMKSSGLVPNVF-MLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAK 350

Query: 457 NYLFSMGDKSHPNTNEIYQYL--------DELMGRCREAGYVPESESAMHELEEE 503
           N+          +  +++ ++        + L+  C   G   E+ S  + L +E
Sbjct: 351 NHFLD-------DAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKE 398


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/561 (39%), Positives = 335/561 (59%), Gaps = 8/561 (1%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI-IRNSK 83
            QQVH   +  G     S+   L+ +  + G ++   ++F  +   D   +NT++ +  S 
Sbjct: 501  QQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASS 560

Query: 84   ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
                ++ +  +  M+   + P+  TF  ++ + + LS+L LG+ VH  V   G   D  V
Sbjct: 561  QTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVV 620

Query: 144  QAALVNFYAKSNNVDVARKVFDRMPDK-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
              AL++ YAKS ++     +F  M D+   ++WNSMISGY  NG  +EA+    LM   G
Sbjct: 621  DNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSG 680

Query: 203  VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
               D  T   +L ACA +  ++ G  +H F +   L+ +VV+ ++L++MY++CG V  A 
Sbjct: 681  QIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYAS 740

Query: 263  EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
            ++F+ M++ N  +W +MISGY  HG G +A+E+F  M      P++VTFV+VLSAC+HAG
Sbjct: 741  KLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAG 800

Query: 323  LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
            LV+ G   F  M  ++G+LP +EH+ C++DL GRAG +++  ++++ +  E P   +W  
Sbjct: 801  LVERGLEYF-EMMPDHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIE-PNALIWRT 858

Query: 383  MLGACKMHK---NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
            +L AC+  K   N DLG E +  LL +EP+NP +YV+ SN +A  G  +     R  M Q
Sbjct: 859  VLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQ 918

Query: 440  KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
               KK  G S V ++   + F  GD+SHPNT EIY+ L+ L+   R AGYVP +E A+++
Sbjct: 919  ATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIYEKLNFLIQNIRNAGYVPLTEYALYD 978

Query: 500  LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
            LEEE +E  L YHSEKLA+AF L R+S G  IRI+KNLR+C DCH A ++IS   +R+II
Sbjct: 979  LEEENKEELLSYHSEKLAIAFVLTRSSSG-PIRIMKNLRVCGDCHIAFRYISQMISRQII 1037

Query: 560  VRDRLRFHHFKRGSCSCLDYW 580
            +RD +RFHHFK G CSC DYW
Sbjct: 1038 LRDSIRFHHFKDGKCSCGDYW 1058



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 186/370 (50%), Gaps = 15/370 (4%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           L QV   ++ +G      + + L+S     G    A+ IF  +   ++   N LI+   +
Sbjct: 294 LDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVR 353

Query: 84  ANFSTDSLLFY---RRMIVSNISPSNYTFSAVIKSCAHLSI----LNLGRAVHCHVFVSG 136
            +FS +++  +   R  +  N      T+  ++ + A  SI    L +GR VH H+  +G
Sbjct: 354 QDFSEEAVKIFVGTRNTVDVNAD----TYVVLLSALAEYSISEEGLRIGRVVHGHMLRTG 409

Query: 137 Y-DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
             D  + V   LVN YAK   ++ A K+F  M     ++WN++IS  +QNG  +EA+  +
Sbjct: 410 LTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHY 469

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
           +LMR   ++P +   +  L++CA L  +  G+ VH   V  GLD++  ++  L+ MY  C
Sbjct: 470 SLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGEC 529

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG-TEAVELFHRMRAHGVRPNNVTFVAV 314
           G +S   ++F+ M+E + ++W  M+          +E V++F+ M   G+ PN VTF+ +
Sbjct: 530 GAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINL 589

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L+A +   +++ G +V A++  ++G++        ++  + ++G +        ++   +
Sbjct: 590 LAALSPLSVLELGKQVHAAV-MKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRR 648

Query: 375 PAPAVWTAML 384
            A + W +M+
Sbjct: 649 DAIS-WNSMI 657



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 92/429 (21%), Positives = 190/429 (44%), Gaps = 22/429 (5%)

Query: 14  ILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           +L+ G      + +H  LI  G      +   L++       +  A ++F  +P  ++  
Sbjct: 70  LLRRGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVS 129

Query: 74  FNTLIIRNSKANFSTDSLLFYRRM---IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
           +  L+        + ++   +R M   + +   P+++TF  ++++C       LG AV  
Sbjct: 130 WTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQV 189

Query: 131 HVFVSG--YDSDLHVQAALVNFYAKSN--NVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
           H  VS   Y S+  V  AL++ Y         +A++VFD  P + ++ WN+++S Y + G
Sbjct: 190 HGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKG 249

Query: 187 FAKEAIGLFNLMR----DFGVNP-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
                  LF  M+       + P + T    + AA    G   +   V  +++  G   +
Sbjct: 250 DVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSD 309

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           + + ++L++ +AR G   +A++IF  + + N +    +I G     +  EAV++F   R 
Sbjct: 310 LYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTR- 368

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC-----MVDLFGR 356
           + V  N  T+V +LSA A   + +EG R+   +   + L  G+          +V+++ +
Sbjct: 369 NTVDVNADTYVVLLSALAEYSISEEGLRI-GRVVHGHMLRTGLTDLKIAVSNGLVNMYAK 427

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
            G +  A K  +  + E      W  ++ A   + N +  V +   L+     +P ++ +
Sbjct: 428 CGAIESASKIFQ--LMEATDRISWNTIISALDQNGNCEEAV-MHYSLMRQSCISPSNFAL 484

Query: 417 LSNIYALAG 425
           +S++ + AG
Sbjct: 485 ISSLSSCAG 493


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/582 (34%), Positives = 339/582 (58%), Gaps = 11/582 (1%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P      +IL+A   L  L+    VH ++I +GY    +    L+++    G +  +Q 
Sbjct: 372 KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQE 431

Query: 62  IFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           +F  +   DS  +N++I   I+N     S D  +   +M+ +++ P + T+  ++     
Sbjct: 432 VFSGMKCKDSVSWNSMINVYIQNG----SFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQ 487

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L  L LG+ +HC +   G++S++ V   LV+ YAK   +  + KVF+ M  + ++ WN++
Sbjct: 488 LGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTI 547

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           I+    +      + + + MR  GV PD  T + +L  C+ L     G+ +H  I   GL
Sbjct: 548 IASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGL 607

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           + +V +   LI MY++CG++  + ++F +M   +V+ WTA+IS  GM+G G +AV  F  
Sbjct: 608 ESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGE 667

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M A G+ P++V FVA++ AC+H+GLV+EG   F  M+++Y + P +EH+ C+VDL  R+ 
Sbjct: 668 MEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSA 727

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
           LL++A  F+   +  KP  ++W A+L AC+M  + ++   V+E ++ + P++ G+YV++S
Sbjct: 728 LLDKAEDFILS-MPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVS 786

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
           N+YA  G+ D+V  +R  +  +GLKK  G S +E+  K Y+F  G K      E+ + L 
Sbjct: 787 NVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLG 846

Query: 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLR 538
            L G   + GY+   +  +H+++E+E+   L  HSE+LA+AFGL+ T PG  ++++KNLR
Sbjct: 847 MLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLR 906

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           +C DCH+  K+IS    RE++VRD  RFH FK G+CSC DYW
Sbjct: 907 VCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 223/456 (48%), Gaps = 15/456 (3%)

Query: 15  LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIF-FCIPSPDSFL 73
           L +      L ++H+ +I  G   S     KL++        T +  +F    PS + + 
Sbjct: 82  LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYX 141

Query: 74  FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
           +N++I   +     +++L  Y       + P  YTF +VI +CA L    + +++H  V 
Sbjct: 142 WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 201

Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
             G+ SDL++  AL++ Y + N++D ARKVF+ MP + VV+WNS+ISGY  NG+  EA+ 
Sbjct: 202 XMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALE 261

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           ++   R+ GV PDS T   VL AC  LG ++ G  +H  I   G+  +V++   L++MY 
Sbjct: 262 IYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYC 321

Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313
           +   +   R IFD M   + ++W  MI GY   G   E+++LF  M  +  +P+ +T  +
Sbjct: 322 KFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITS 380

Query: 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC----MVDLFGRAGLLNEAYKFVKD 369
           +L AC H G ++ G  V      +Y +  G E        +++++ + G L  + +    
Sbjct: 381 ILQACGHLGDLEFGKYV-----HDYMITSGYECDTTASNILINMYAKCGNLLASQEVFS- 434

Query: 370 VIGEKPAPAV-WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428
             G K   +V W +M+     + +FD  +++ + + +    +   YVML ++    G + 
Sbjct: 435 --GMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLX 492

Query: 429 RVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
             + +   + + G   ++  S   VD       MGD
Sbjct: 493 LGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGD 528


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/569 (37%), Positives = 321/569 (56%), Gaps = 33/569 (5%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T ++S +   G +  A+R+    P  +   +  LI   S+A  + +++  +  M+   I+
Sbjct: 175 TTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIA 234

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN------- 156
           P   T   ++ +C  L  LN G ++H  V          +  AL++ YAK  +       
Sbjct: 235 PDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREV 294

Query: 157 -------------------------VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
                                    VD+AR +FD+M D  V+ +NS+I+GY   G  +EA
Sbjct: 295 FDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREA 354

Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
           + LF  MR  G+  D+ T V +L A A LG +  GR +H  I  + ++ +V L T+L++M
Sbjct: 355 LLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDM 414

Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
           Y +CG V +A   F  MS  +V  W+AMI G   +G G  A+E F  M+  G   N+VT+
Sbjct: 415 YMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTY 474

Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
           +AVL+AC+H+ L+ EG   F  MR  + + P +EH+ CM+DL GR+GLL+EA   V+  +
Sbjct: 475 IAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQ-TM 533

Query: 372 GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431
             +P   +W ++L AC++HKN DL    A HLL +EP     YV + NIY  + + +   
Sbjct: 534 PMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDAS 593

Query: 432 VVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVP 491
            +R +M ++G+KK  GYS++ V  + + F +GD+SHP   EI   ++E+  R + AGY P
Sbjct: 594 KIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYSP 653

Query: 492 ESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFIS 551
            +     +++EEE+E +L  HSEKLA+AFGL+  +P + + I+KNLR+C DCHSAIK IS
Sbjct: 654 ITSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCEDCHSAIKLIS 713

Query: 552 VATNREIIVRDRLRFHHFKRGSCSCLDYW 580
              NREIIVRDR RFHHF+ G CSC D+W
Sbjct: 714 RLWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 198/445 (44%), Gaps = 96/445 (21%)

Query: 25  QQVHAHLIVAGYGR------SRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPDSFLFNT 76
           Q    H +V   GR      +  +L  L S +   D   + YA  +F  +P   +FLF+T
Sbjct: 14  QATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPLHLRYALSLFDRMPC-STFLFDT 72

Query: 77  LIIRNSKANFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI-LNLGRAVHCHVFV 134
            +    +A+   D  ++ YRRM   ++ P  +TF  + K CA     + LGR +H   F 
Sbjct: 73  ALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHAACFR 132

Query: 135 S----------------------------GYD----SDLHVQAALVNFYAKSNNVDVARK 162
           +                             +D     D+     +++  AK   +D AR+
Sbjct: 133 TLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARR 192

Query: 163 VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222
           +  R P ++VV W  +ISGY + G A EA+  FN M   G+ PD  T + +L+AC QL D
Sbjct: 193 LLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKD 252

Query: 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI------------------ 264
           ++ G  +H  +  + + ++  L  +LI+MYA+CG+  +ARE+                  
Sbjct: 253 LNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMID 312

Query: 265 --------------FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
                         FD M + +VI + ++I+GY   G   EA+ LF +MR HG+  +N T
Sbjct: 313 GYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFT 372

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAY-- 364
            V +L+A A  G + +G  + A + Q       VE  V     ++D++ + G + EA   
Sbjct: 373 MVGLLTASASLGALPQGRALHACIEQRL-----VERDVYLGTALLDMYMKCGRVEEAMVA 427

Query: 365 ---KFVKDVIGEKPAPAVWTAMLGA 386
                V+DV         W+AM+G 
Sbjct: 428 FKQMSVRDV-------HTWSAMIGG 445



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 117/254 (46%), Gaps = 2/254 (0%)

Query: 35  GYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFY 94
           G GR       ++   C  G +  A+ +F  +   D   FN+LI          ++LL +
Sbjct: 299 GRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLF 358

Query: 95  RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154
            +M    +   N+T   ++ + A L  L  GRA+H  +     + D+++  AL++ Y K 
Sbjct: 359 TKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKC 418

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
             V+ A   F +M  + V  W++MI G   NG  K A+  F  M+  G + +S T + VL
Sbjct: 419 GRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVL 478

Query: 215 AACAQLGDIDLGR-WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELN 272
            AC+    +D GR +  E  +   +   +     +I++  R G + +A ++   M  + N
Sbjct: 479 TACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPN 538

Query: 273 VIAWTAMISGYGMH 286
            + W +++S   +H
Sbjct: 539 AVIWASILSACRVH 552


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/575 (35%), Positives = 330/575 (57%), Gaps = 5/575 (0%)

Query: 6    PHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC 65
            P + ++ ++L +    +  Q +   ++ +GY RS  + T L+S+      +  A+ +F  
Sbjct: 539  PDALSFTSVLSSCYCSQEAQVLRMCILESGY-RSACLETALISMHGRCRELEQARSVFDE 597

Query: 66   IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
            +   D   +  ++   ++     +    +RRM +  + P  +T +  + +C   + L LG
Sbjct: 598  MDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLG 657

Query: 126  RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQN 185
            + +H  V   G ++D+ V+ AL+N Y+   +   A   F+ M  + +V+WN M + Y Q 
Sbjct: 658  KIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQA 717

Query: 186  GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
            G AKEA+ LF  M+  GV PD  T    L        +  G+  H      GLD +V +A
Sbjct: 718  GLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSDVSVA 777

Query: 246  TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
            T L+ +YA+CG + +A  +F    +  V+   A+I     HG+  EAV++F +M+  GVR
Sbjct: 778  TGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVR 837

Query: 306  PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
            P+  T V+++SAC HAG+V+EG   F +M++ +G+ P +EH+ C VDL GRAG L  A +
Sbjct: 838  PDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQ 897

Query: 366  FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425
             ++ +  E     VWT++LG CK+  + +LG   A+ +L ++P N   +V+LSNIY   G
Sbjct: 898  IIRKMPFEDN-TLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATG 956

Query: 426  RMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485
            +    +V R  ++ + +K   G S +E+ ++ + F  GD+SHP T+EIY  LD+L    R
Sbjct: 957  KWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLDKLELLMR 1016

Query: 486  EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHS 545
             AGY  E++  + + E+E +E +L YHSE++A+AFGL+ T P  T++IVKNLR+C DCH+
Sbjct: 1017 RAGY--EADKGL-DAEDELKEKALGYHSERIAIAFGLIATPPDTTLKIVKNLRVCGDCHT 1073

Query: 546  AIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            A K+IS+   REIIVRD LRFHHF  G+CSC D W
Sbjct: 1074 ATKYISMIMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 199/403 (49%), Gaps = 17/403 (4%)

Query: 29  AHLIVAGYGRSRSMLTK--LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           AH ++A  G  + +     L+++    G +  A  IF  +   +   +  LI  N+++  
Sbjct: 47  AHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQSGA 106

Query: 87  STDSLLFYRRMIV-SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD----L 141
              +   +R M++ S+ +P++YT  A++ +CA+   L +GR++H  ++  G + +     
Sbjct: 107 FARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTAT 166

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG-FAKEAIGLFNLMRD 200
            V  A++N YAK  + + A  VF  +P+K VV+W +M   Y Q   F  +A+ +F  M  
Sbjct: 167 LVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLL 226

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
             + P+  T +  L AC  L D   G W+H  +   GL  + +   +LINMY +CG+   
Sbjct: 227 QPLAPNVITFITALGACTSLRD---GTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEG 283

Query: 261 AREIFDMMS---ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           A  +F  M+   EL++++W AMIS     G   +A+ +F R+R  G+RPN+VT + +L+A
Sbjct: 284 AYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNA 343

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
            A +G+     R F     E G L  V     ++ ++ + G  + A+   +  I  K   
Sbjct: 344 LAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRR-IRWKCDV 402

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLL--SVEPENPGHYVMLS 418
             W  MLGA +  K+F   V    H+L   ++P       +L+
Sbjct: 403 ISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILN 445



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 174/376 (46%), Gaps = 13/376 (3%)

Query: 1   MKNKQPHSPAYEAILKA----GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFI 56
           ++  +P+S     IL A    G      ++ H  +  +GY R   +   ++S+    GF 
Sbjct: 327 LEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFF 386

Query: 57  TYAQRIFFCIP-SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           + A  +F  I    D   +NT++  +         +  +  M+++ I P+  +F A++ +
Sbjct: 387 SAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNA 446

Query: 116 CAHLSILNLGRAVHCHVFVSGYD-SDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSV 172
           C++   L+ GR +H  +     D  +  V   LV+ Y K  ++  A  VF  MP   +S+
Sbjct: 447 CSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSL 506

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           V WN M+  Y QN  +KEA G    M   GV PD+ +   VL++C    +  + R     
Sbjct: 507 VTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMC--- 563

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           I+  G   +  L T+LI+M+ RC  + +AR +FD M   +V++WTAM+S    +    E 
Sbjct: 564 ILESGYR-SACLETALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEV 622

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
             LF RM+  GV P+  T    L  C  +  +  G  + A +  E GL   +     +++
Sbjct: 623 HHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACV-TEIGLEADIAVENALLN 681

Query: 353 LFGRAGLLNEAYKFVK 368
           ++   G   EA  F +
Sbjct: 682 MYSNCGDWREALSFFE 697



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 186/399 (46%), Gaps = 26/399 (6%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLT----KLLSLVCDAGFITY 58
           P+S    A+L A    + L   + +HA +   G  R  +  T     ++++    G    
Sbjct: 125 PNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPED 184

Query: 59  AQRIFFCIPSPDSFLFNTLI-IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
           A  +F  IP  D   +  +      +  F  D+L  +R M++  ++P+  TF   + +C 
Sbjct: 185 AIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACT 244

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS---VVA 174
            L     G  +H  +  +G   D     AL+N Y K  + + A  VF  M  +    +V+
Sbjct: 245 SLRD---GTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVS 301

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG-DIDLGRWVHEFI 233
           WN+MIS   + G   +A+ +F  +R  G+ P+S T + +L A A  G D    R  H  I
Sbjct: 302 WNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRI 361

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEA 292
              G   +VV+  ++I+MYA+CG  S A  +F  +  + +VI+W  M+          + 
Sbjct: 362 WESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKV 421

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG---HRVFASMRQEYGLLPGVEHHVC 349
           V  FH M   G+ PN V+F+A+L+AC+++  +  G   H +  + R++Y     VE  V 
Sbjct: 422 VNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDY-----VESSVA 476

Query: 350 --MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
             +V ++G+ G + EA    K++     +   W  MLGA
Sbjct: 477 TMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGA 515



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 146/285 (51%), Gaps = 11/285 (3%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           ++A+++SC   + L  G+  H  +  +G +  L +   L+N Y +  +++ A  +F +M 
Sbjct: 28  YTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME 87

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
           +++VV+W ++IS   Q+G    A  LF  ++ +    P+S T V +L ACA   D+ +GR
Sbjct: 88  ERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGR 147

Query: 228 WVHEFIVGQGLDVNVVLAT----SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
            +H  I   GL+     AT    ++INMYA+CG+   A  +F  + E +V++WTAM   Y
Sbjct: 148 SIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAY 207

Query: 284 GMH-GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
                +  +A+ +F  M    + PN +TF+  L AC     +++G  +  S+  E GL  
Sbjct: 208 AQERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTWLH-SLLHEAGLGF 263

Query: 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV-WTAMLGA 386
                  +++++G+ G    AY   K +   +    V W AM+ A
Sbjct: 264 DPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISA 308



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 92/186 (49%), Gaps = 8/186 (4%)

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
           +L +C    D+  G+  HE I   GL+ ++ L   LINMY RCG++ +A  IF  M E N
Sbjct: 31  LLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERN 90

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           V++WTA+IS     G    A  LF  M       PN+ T VA+L+ACA++  +  G  + 
Sbjct: 91  VVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIH 150

Query: 332 ASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
           A M  E GL             M++++ + G   +A   V   I EK   + WTAM GA 
Sbjct: 151 A-MIWELGLERESTTATLVGNAMINMYAKCGSPEDAIA-VFLTIPEKDVVS-WTAMAGAY 207

Query: 388 KMHKNF 393
              + F
Sbjct: 208 AQERRF 213


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/580 (36%), Positives = 328/580 (56%), Gaps = 9/580 (1%)

Query: 5   QPHSPAYEAIL---KAGPRLKPL-QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQ 60
           QPHS ++ A +    AGP   P  + +HA L   G+  +    T L+S+    G +  + 
Sbjct: 132 QPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESV 191

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           + F  +   ++  +N +I   ++     ++L   ++M +  I   + T+  ++ +    S
Sbjct: 192 KTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQPS 251

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
            L   R +H  +  +G+D D  V   ++N Y K   +  A  +F  M    V+AWN+MI+
Sbjct: 252 QLKSARYIHDCILRTGFDQD--VVNVILNMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIA 309

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
            Y Q+G   EA+  + LM++ GV PD  T V V+ ACA LGD+++G+ VH  +  +   V
Sbjct: 310 AYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQV 369

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
              LA SL+NMY +CG +  AR IFD  ++ +V  W AMI  Y  H +  +A ELF  MR
Sbjct: 370 TE-LANSLVNMYGKCGILDVARSIFDKTAKGSV-TWNAMIGAYAQHSHEQQAFELFLLMR 427

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G  P+ +TF++VLSACA+AGL +E H  F  M+Q++G+ PG  H+ CMV+  G+AG L
Sbjct: 428 LDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPGGGHYGCMVESLGKAGRL 487

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
           ++A   ++ +  E P    WT+ L  C+ H +   G   A+  + ++PE    YV L+ I
Sbjct: 488 SDAEALIQGMPFE-PDVLTWTSFLANCRSHGDMKRGKFAAKGAIRIDPEASTGYVALARI 546

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           +A AG       +R +M+ +G++K+ G S +++    Y F+ GD+S+P + EI+  L  L
Sbjct: 547 HADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDELKRL 606

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
               + AGY P+     H++E  ++E  L  HSE+LA+AFG++ TS G  +RI+KNLR+C
Sbjct: 607 DKEMKRAGYDPDMTHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSQGTPLRIMKNLRVC 666

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH+  K  S  T REIIVRD  RFHHFK GSCSC D+W
Sbjct: 667 GDCHAMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 706



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 209/416 (50%), Gaps = 14/416 (3%)

Query: 14  ILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           ++++  RL  L   +++H  +   G G    +   L+ +    G +  A+ +F   P+ +
Sbjct: 40  VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC-AHLSILNLGRAVH 129
            F +  LI   ++   S ++L  +  M+   I P + +F+A I +C A    L  GRA+H
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159

Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
             +   G+   +    +LV+ Y+K  +++ + K F+ M + + V+WN+MI+ + ++    
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGL 219

Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
           EA+     M   G+   S T + +++A  Q   +   R++H+ I+  G D +VV    ++
Sbjct: 220 EALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVV--NVIL 277

Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
           NMY +CG +  A  +F  MS+ +VIAW  MI+ Y  HG+ +EA+  +  M+  GV P++ 
Sbjct: 278 NMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDY 337

Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK-FVK 368
           T+V+V+ ACA  G ++ G +V   +          E    +V+++G+ G+L+ A   F K
Sbjct: 338 TYVSVIDACATLGDMEVGKQVHRRLGDR--AFQVTELANSLVNMYGKCGILDVARSIFDK 395

Query: 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
              G       W AM+GA   H +     E+   L+ ++ E P +   +S + A A
Sbjct: 396 TAKGS----VTWNAMIGAYAQHSHEQQAFELF-LLMRLDGEEPSYITFMSVLSACA 446



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 131/275 (47%), Gaps = 13/275 (4%)

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
           ++++S  +Q G    AI      +D     D   CV V+ +CA+LG +  GR +H+ I  
Sbjct: 7   STLLSKRQQLGQIAAAIDALQKRKD----ADLKECVRVIQSCARLGALAEGRRIHQLIRR 62

Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
            GL  +V ++  L+ MY +CG++ +AR +F+     NV +WT +I+    HG   EA+ L
Sbjct: 63  VGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALAL 122

Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355
           F+ M   G++P++V+F A ++AC+         R   ++ + YG    V     +V ++ 
Sbjct: 123 FYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYS 182

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN----P 411
           + G L E+ K  + +   +     W AM+ A   H+    G+E    L  +  E      
Sbjct: 183 KCGSLEESVKTFESMT--ELNAVSWNAMIAAFAEHRR---GLEALRTLQKMFLEGIRACS 237

Query: 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
             Y+ L + Y    ++     + + +++ G  + V
Sbjct: 238 VTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDV 272


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/548 (38%), Positives = 313/548 (57%), Gaps = 37/548 (6%)

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI-SPSNYTFSAVIKSCAHLSILNLGRA 127
           P+   +N L+   +++  + D+++    M    +  P     S  + +   + ++++G+ 
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQ 178

Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAK-------------SNNVDVA-------------- 160
           +H +   +G  +D  V  AL++ Y K             S+++DVA              
Sbjct: 179 LHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQ 238

Query: 161 --------RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVC 212
                   ++  DR  + +VV+W S+++   QNG   EA+  F  M+  G  P+S T  C
Sbjct: 239 VCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPC 298

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
           VL A A +  +  GR  H F + +G   +V ++++L++MYA+CG V  AR IFD M   N
Sbjct: 299 VLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRN 358

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           V++W AMI GY M+G    AV +FH M     +P+ VTF  +L+AC  AGL +EG   F 
Sbjct: 359 VVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFK 418

Query: 333 SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKN 392
            M  EYG+ P +EH+ CMV L GRAG L+EAY  + D+  E P   +W ++LG+C++H N
Sbjct: 419 EMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFE-PDAYIWGSLLGSCRVHGN 477

Query: 393 FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVE 452
            DL    AE L  +EPEN G+YV+LSNIYA     DRV  VR +M   GLKK  G S +E
Sbjct: 478 VDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIE 537

Query: 453 VDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYH 512
           +  K ++   GD SHP    I + +++L  + R+ G+VP ++  +H++EE+E++  L  H
Sbjct: 538 IKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVH 597

Query: 513 SEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRG 572
           SEKLA+A GL+ TSPG T+R++KNLR+C DCH A+KFIS    REI VRD  RFHHF  G
Sbjct: 598 SEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGG 657

Query: 573 SCSCLDYW 580
            CSC D+W
Sbjct: 658 KCSCGDFW 665



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 154/365 (42%), Gaps = 82/365 (22%)

Query: 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
           +  P  +      KSC     L L RA+H    VSG   D  V ++L++ Y +      A
Sbjct: 15  SFPPDPHLLPTAFKSC---PTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNA 71

Query: 161 RKVFDRMP--------------------------------------DKSVVAWNSMISGY 182
           R +FD MP                                      + +V+ WN ++SG 
Sbjct: 72  RALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGL 131

Query: 183 EQNGFAKEAIGLFNLMRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
            ++G A++A+     M   G + PD+T   C L+A   +G + +G+ +H + V  G   +
Sbjct: 132 NRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRAD 191

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMS-------------------------------- 269
             + T+LI+MY +CG  ++   +FD  S                                
Sbjct: 192 ACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVD 251

Query: 270 ---ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
              ELNV++WT++++    +G   EAVE F  M+A G  PN+VT   VL A A+   +  
Sbjct: 252 RGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMH 311

Query: 327 GHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           G      ++R+  G L  V     +VD++ + G + +A + + D +  +   + W AM+G
Sbjct: 312 GRSAHCFALRK--GFLHDVYVSSALVDMYAKCGRVKDA-RIIFDTMVSRNVVS-WNAMIG 367

Query: 386 ACKMH 390
              M+
Sbjct: 368 GYAMY 372



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 6/171 (3%)

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
           L + +R     PD         +C  L    L R +H      GL  +  +A+SL++ Y 
Sbjct: 7   LHHFLRHVSFPPDPHLLPTAFKSCPTL---PLARALHAVAEVSGLARDPFVASSLLHAYL 63

Query: 254 RCGNVSKAREIFDMM--SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVRPNNVT 310
           R G    AR +FD M   +  V+ W+A+++ +   G    A  L   MR   GV PN +T
Sbjct: 64  RLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVIT 123

Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
           +  ++S    +G  ++     A+M  E  L P      C +   G  GL++
Sbjct: 124 WNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVS 174


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/579 (35%), Positives = 327/579 (56%), Gaps = 17/579 (2%)

Query: 11   YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY---------AQR 61
            + A+ +AG    PL     HL+   + RSRS  T +L++  +   + +          +R
Sbjct: 438  FAAMRRAGYSRHPL-----HLLQYSHSRSRS--TSVLNVFVNNSLLDFYSKCDCLDDMRR 490

Query: 62   IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
            +F  +P  D+  +N +I   +    +   L  +R M           ++ ++     L  
Sbjct: 491  LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 550

Query: 122  LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
            +++G+ +H  + + G  S+  +  AL++ Y+K   +D A+  F    +KS ++W ++I+G
Sbjct: 551  VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 610

Query: 182  YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
            Y QNG  +EA+ LF+ MR  G+ PD  T   ++ A + L  I LGR +H +++  G   +
Sbjct: 611  YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 670

Query: 242  VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
            V   + L++MYA+CG + +A   FD M E N I+W A+IS Y  +G    A+++F  M  
Sbjct: 671  VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 730

Query: 302  HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             G  P++VTF++VL+AC+H GL  E  + F  M+ +Y + P  EH+ C++D  GR G  +
Sbjct: 731  CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFS 790

Query: 362  EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
            +  K + + +  K  P +WT++L +C++H N +L    A+ L  +EP +   YV+LSNIY
Sbjct: 791  QVQKMLVE-MPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIY 849

Query: 422  ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
            A AG+ +    V+ IM  +G++K  GYS VE+ QK Y F+  D + P  +EI   LD L 
Sbjct: 850  ARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLY 909

Query: 482  GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
                + GY P+   A+H ++ E +  SL+YHSE+LA+AF LM T  G  IRI+KNL  C+
Sbjct: 910  KEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACL 969

Query: 542  DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH+ IK IS   NR+IIVRD  RFHHFK G CSC DYW
Sbjct: 970  DCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 1008



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 13/210 (6%)

Query: 100 SNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNF----YAKSN 155
           S  +P+  T   V+    +L + +L  + H H   + +D   H     +N     Y+ S 
Sbjct: 243 SQAAPAGVTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSG 302

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL- 214
           ++  A+ +F   P ++   W  M+  +   G   +A+ LF  M   GV PD  T   VL 
Sbjct: 303 DLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLN 362

Query: 215 -AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
              C           +H F +  GLD +V +  +L++ Y + G ++ AR +F  M + + 
Sbjct: 363 LPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDA 415

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           + + AM+ G    G  T+A++LF  MR  G
Sbjct: 416 VTYNAMMMGCSKEGLHTQALQLFAAMRRAG 445


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/557 (37%), Positives = 322/557 (57%), Gaps = 3/557 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q H + + AG+   R +   +L + C    +  A ++F  +   D+F FN++I      
Sbjct: 128 RQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDR 187

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
                SL   R M          ++ AV+  CA +    LG  VH        + +++V 
Sbjct: 188 GQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVG 247

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           +ALV+ Y K ++V  A + F+ +P+K+VV+W ++++ Y QN   ++A+ LF  M   GV 
Sbjct: 248 SALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQ 307

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T    L +CA L  +  G  +   ++  G   +++++ +L+NMY++ G++  A  +
Sbjct: 308 PNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRV 367

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  M   +V++W  +I+GY  HG   E +E FH M +  V P+ VTFV VLSACA  GLV
Sbjct: 368 FISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQLGLV 427

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF-VKDVIGEKPAPAVWTAM 383
            E      +M +E G+ PG EH+ CMV L  R G L+EA +F V + IG       W ++
Sbjct: 428 DEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTDVVA--WRSL 485

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           L +C+++KN+ LG  VAE +L +EP + G YV+LSN+YA A R D V  VR  M ++ ++
Sbjct: 486 LNSCQVYKNYGLGHRVAEQILQLEPSDVGTYVLLSNMYAKANRWDGVVKVRKHMRERAVR 545

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K  G S + V    ++F+  +K HP  ++I + L+EL+ + +  GYVP     +H++++E
Sbjct: 546 KSPGVSWIHVGSDVHVFTSEEKVHPQMDQIAKKLEELIDQIKAIGYVPNFAVVLHDIDDE 605

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
            +E  L YHSEKLALAFGL+ T  G TI I+KNLR+C DCH AIK ISV T+R+I+VRD 
Sbjct: 606 RKEEHLMYHSEKLALAFGLIHTPKGATIHIMKNLRICDDCHVAIKLISVVTSRKIVVRDA 665

Query: 564 LRFHHFKRGSCSCLDYW 580
           +RFH  + G CSC DYW
Sbjct: 666 VRFHCIEGGICSCNDYW 682


>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/595 (35%), Positives = 331/595 (55%), Gaps = 47/595 (7%)

Query: 32  IVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSL 91
           IVAG+G    + + +++       +  A+++F  +   D+ L+NT++    K +   +++
Sbjct: 133 IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAI 192

Query: 92  LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFY 151
           L +  M+   I   + T +AV+   A L  L LG  + C     G+ S  +V   L   Y
Sbjct: 193 LIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLY 252

Query: 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211
           +K   ++ AR +F ++    +V++N+MISGY  N   + ++ LF  +   G   +S++ V
Sbjct: 253 SKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIV 312

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
            ++      G + L R +H F    G+  N  ++T+L  +Y+R   +  AR +FD  SE 
Sbjct: 313 GLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEK 372

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN------------------------ 307
           ++ +W AMISGY  +G   +A+ LF  M+   VRPN                        
Sbjct: 373 SLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVH 432

Query: 308 ----------------------NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
                                  VTF++VL AC+HAGLV+EG  +F SM  ++G  P  E
Sbjct: 433 DLINRESFESNIFMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPE 492

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ CMVDL GRAG L++A  F++ +  E P P VW A+LGAC +HK+ +L    ++ L  
Sbjct: 493 HYACMVDLLGRAGNLDKALDFIRKMPVE-PGPPVWGALLGACMIHKDANLARLASDKLFE 551

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           ++P+N G+YV+LSNIY+          VR ++ ++ L K  G + +EV    ++F+ GD+
Sbjct: 552 LDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQ 611

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
           SHP    IY  L++L G+ REAG+  E+ +A+H++EEEE+E  ++ HSEKLA+AFGL+ +
Sbjct: 612 SHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITS 671

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            PG  IRI+KNLR+C+DCH+A KFIS  T R I+VRD  RFHHFK G CSC DYW
Sbjct: 672 EPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 726



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 152/296 (51%), Gaps = 4/296 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L  L Q HA +I+ G       +TKL   +     I  A  +F  IP+PD FL+N LI  
Sbjct: 23  LHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRA 82

Query: 81  NSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
            S  N  + ++  Y  +  S  + P N+T++ VI   + L +  L  A      V+G+ S
Sbjct: 83  FSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHS---IVAGFGS 139

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           DL V +A+V  Y K + V  ARKVFD M ++  V WN+M+SG  +N    EAI +F  M 
Sbjct: 140 DLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMV 199

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+  DSTT   VL   A+L D+ LG  +    +  G   +  + T L  +Y++CG + 
Sbjct: 200 KGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIE 259

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
            AR +F  + + +++++ AMISGY  +     +V LF  +   G + N+ + V ++
Sbjct: 260 TARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/489 (41%), Positives = 296/489 (60%), Gaps = 7/489 (1%)

Query: 97  MIVSNISPSNYTFSAVIKSCA-HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155
           M    + P    F A + +C   L+ L LG+ +H  V  +G +S+  V  ALVN Y K+ 
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN---PDSTTCVC 212
            +D A +VF  +  K +V+W +++S Y +    +EA+ LF  M   G++   PD +    
Sbjct: 61  CLDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAF 120

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDV-NVVLATSLINMYARCGNVSKAREIFDMMSEL 271
           +L ACA L     GR  H  I   G D  + VL   +INMY +CGN+  A E+FD MSE 
Sbjct: 121 LLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSER 180

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           + +AWT +ISGY  HG+  E++ +F RM+  G +P+ V+ + VLS C+HAGLV++G   F
Sbjct: 181 DTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFF 240

Query: 332 ASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHK 391
             + +E+G+ PG +H+ CM+DL GR+G L  A   ++ +  +  A   W   L ACK+H 
Sbjct: 241 LDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMN-WAIFLAACKVHS 299

Query: 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTV 451
           + + G   AE +L +EP  P  YV LSNIYA AG  D+V+ VR+ M   GL+K  G S++
Sbjct: 300 DTERGKRAAEKVLELEP-VPAAYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSI 358

Query: 452 EVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRY 511
           EV+ + + F  GDKSHP   EIY  L+ L  +   +GYVP+++  +  + EE++E  L +
Sbjct: 359 EVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQKERLLCF 418

Query: 512 HSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKR 571
           HSEKLA+AFGL+ T  G ++RI+KNLR+C DCH+A KF+S    REI +RD  RFHHF+ 
Sbjct: 419 HSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQD 478

Query: 572 GSCSCLDYW 580
           G CSC DYW
Sbjct: 479 GHCSCGDYW 487



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 153/319 (47%), Gaps = 16/319 (5%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H+ ++ AG   +  + T L+++   AG +  A R+F  +   D   +  L+   S+ + 
Sbjct: 33  IHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLERKDLVSWTALMSAYSREDL 92

Query: 87  STDSLLFYRRMIVSNIS---PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLH 142
             ++L  +R M +  +    P    F+ ++++CA LS    GR  H  +   GYD SD  
Sbjct: 93  YREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGV 152

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           +   ++N Y K  N+  A +VFD M ++  VAW ++ISGY  +G ++E++ +F  M+  G
Sbjct: 153 LGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDG 212

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ--GLDVNVVLATSLINMYARCGNVSK 260
             PD  + +CVL+ C+  G ++ G W     + +  G++        +I++  R G++  
Sbjct: 213 SKPDGVSLLCVLSVCSHAGLVEQG-WDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEA 271

Query: 261 AREIFDMMS-ELNVIAWTAMISGYGMHG---YGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
           A  +   M  +   + W   ++   +H     G  A E     +   + P    +V++ +
Sbjct: 272 AEVMIRRMPFQATAMNWAIFLAACKVHSDTERGKRAAE-----KVLELEPVPAAYVSLSN 326

Query: 317 ACAHAGLVQEGHRVFASMR 335
             A AG   +  RV ++M+
Sbjct: 327 IYAAAGEWDQVDRVRSAMK 345


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/368 (49%), Positives = 251/368 (68%), Gaps = 1/368 (0%)

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
           +L ACA +  ++ G+ VH  I+  G +++V ++  L++MY +CG +  A+E+F  + E +
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           V +W AMISG   HG G EAV LF +M   GV+PN +TFV VLS C+HAGLV EG   F 
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 333 SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKN 392
           SM +++G+ P  EH+ CMVDLFGRAG L+EA  F+  +  E P  +VW ++LGAC++H N
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVE-PNASVWGSLLGACRVHGN 182

Query: 393 FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVE 452
            +L     E L+ + PENPG YV+LSNIYA AGR D    VR +M  + +KK  G S +E
Sbjct: 183 IELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIE 242

Query: 453 VDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYH 512
           V  K + F +GD SHP   EIY+ L+ L  + + AGY+P +   +H++EEE++E+ L +H
Sbjct: 243 VQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHH 302

Query: 513 SEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRG 572
           SEKLA+AFG++ T PG TIR+VKNLR+C DCH+A KFIS   +REI++RD  RFHHFK G
Sbjct: 303 SEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDG 362

Query: 573 SCSCLDYW 580
            CSC DYW
Sbjct: 363 QCSCGDYW 370



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 116/232 (50%), Gaps = 9/232 (3%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
            + ++++CA ++ L  G+ VH  +   G++ D+ V   LV+ Y K   ++ A++VF ++ 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR- 227
           +  V +WN+MISG  Q+G  KEA+ LF  M   GV P+  T V VL+ C+  G +D GR 
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
           +        G+       + +++++ R G + +A    + M  E N   W +++    +H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 287 GYGTEAVELFHRMRAHGVR--PNNV-TFVAVLSACAHAGLVQEGHRVFASMR 335
           G     +EL  R     +   P N  T+V + +  A AG   +  +V   M+
Sbjct: 181 G----NIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMK 228


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/555 (34%), Positives = 333/555 (60%), Gaps = 2/555 (0%)

Query: 27   VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
            +H  ++V+G   ++ +   L+S+    G ++ ++R+   +P  D   +N LI   ++   
Sbjct: 474  LHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDED 533

Query: 87   STDSLLFYRRMIVSNISPSNYTFSAVIKSCA-HLSILNLGRAVHCHVFVSGYDSDLHVQA 145
               +L  ++ M V  +S +  T  +V+ +C     +L  G+ +H ++  +G++SD HV+ 
Sbjct: 534  PDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKN 593

Query: 146  ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
            +L+  YAK  ++  ++ +F+ + +++++ WN+M++    +G  +E + L + MR FGV+ 
Sbjct: 594  SLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSL 653

Query: 206  DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
            D  +    L+A A+L  ++ G+ +H   V  G + +  +  +  +MY++CG + +  ++ 
Sbjct: 654  DQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKML 713

Query: 266  DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
                  ++ +W  +IS  G HGY  E    FH M   G++P +VTFV++L+AC+H GLV 
Sbjct: 714  PPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVD 773

Query: 326  EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            +G   +  + +++GL P +EH +C++DL GR+G L EA  F+   +  KP   VW ++L 
Sbjct: 774  KGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISK-MPMKPNDLVWRSLLA 832

Query: 386  ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
            +CK+H N D G + AE+L  +EPE+   YV+ SN++A  GR + VE VR  M  K +KK 
Sbjct: 833  SCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKK 892

Query: 446  VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
               S V++  K   F +GD++HP T EIY  L+++    +E+GYV ++  A+ + +EE++
Sbjct: 893  QACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQK 952

Query: 506  EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
            E++L  HSE+LALA+ LM T  G T+RI KNLR+C DCHS  KF+S    R I++RD+ R
Sbjct: 953  EHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYR 1012

Query: 566  FHHFKRGSCSCLDYW 580
            FHHF+RG CSC DYW
Sbjct: 1013 FHHFERGLCSCKDYW 1027



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 177/371 (47%), Gaps = 12/371 (3%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+   ++ +G     ++   L+S++   G + YA  IF  +   D+  +N++    ++ 
Sbjct: 270 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 329

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +S   +  M   +   ++ T S ++    H+     GR +H  V   G+DS + V 
Sbjct: 330 GHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVC 389

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             L+  YA +     A  VF +MP K +++WNS+++ +  +G + +A+GL   M   G +
Sbjct: 390 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 449

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +  T    LAAC      + GR +H  +V  GL  N ++  +L++MY + G +S++R +
Sbjct: 450 VNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 509

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG-L 323
              M   +V+AW A+I GY       +A+  F  MR  GV  N +T V+VLSAC   G L
Sbjct: 510 LLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL 569

Query: 324 VQEGHRVFASMRQEYGLLPGVE--HHV--CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           ++ G  + A     Y +  G E   HV   ++ ++ + G L+ +      +  +      
Sbjct: 570 LERGKPLHA-----YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL--DNRNIIT 622

Query: 380 WTAMLGACKMH 390
           W AML A   H
Sbjct: 623 WNAMLAANAHH 633



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 172/373 (46%), Gaps = 32/373 (8%)

Query: 16  KAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFN 75
           ++G   +   QVH  +  +G      + T +L L    G ++ ++++F  +P  +   + 
Sbjct: 185 RSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWT 244

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
           +L++  S      + +  Y+                           +LGR +   V  S
Sbjct: 245 SLMVGYSDKGEPEEVIDIYKDE-------------------------SLGRQIIGQVVKS 279

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G +S L V+ +L++      NVD A  +FD+M ++  ++WNS+ + Y QNG  +E+  +F
Sbjct: 280 GLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIF 339

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
           +LMR F    +STT   +L+    +     GR +H  +V  G D  V +  +L+ MYA  
Sbjct: 340 SLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGA 399

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G   +A  +F  M   ++I+W ++++ +   G   +A+ L   M + G   N VTF + L
Sbjct: 400 GRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSAL 459

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
           +AC      ++G R+   +    GL         +V ++G+ G ++E+ +    V+ + P
Sbjct: 460 AACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRR----VLLQMP 514

Query: 376 APAV--WTAMLGA 386
              V  W A++G 
Sbjct: 515 RRDVVAWNALIGG 527



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 143/298 (47%), Gaps = 28/298 (9%)

Query: 25  QQVHAHLIVAGYGRSRSMLTK-LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           + VHA L V G  R   + T  L+++    G +  A+ +F  +P  +   +NT++    +
Sbjct: 92  RAVHA-LCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVR 150

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL-SILNLGRAVHCHVFVSGYDSDLH 142
                + + F+R+M    I PS++  ++++ +C    S+   G  VH  V  SG  SD++
Sbjct: 151 VGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 210

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           V  A+++ Y     V  +RKVF+ MPD++VV+W S++ GY   G  +E I ++       
Sbjct: 211 VSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYK------ 264

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
                              D  LGR +   +V  GL+  + +  SLI+M    GNV  A 
Sbjct: 265 -------------------DESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYAN 305

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
            IFD MSE + I+W ++ + Y  +G+  E+  +F  MR      N+ T   +LS   H
Sbjct: 306 YIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGH 363



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 133/277 (48%), Gaps = 2/277 (0%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
           A L  G  L+  + +HA+++ AG+     +   L+++    G ++ +Q +F  + + +  
Sbjct: 562 ACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNII 621

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
            +N ++  N+      + L    +M    +S   ++FS  + + A L++L  G+ +H   
Sbjct: 622 TWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLA 681

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI 192
              G++ D  +  A  + Y+K   +    K+     ++S+ +WN +IS   ++G+ +E  
Sbjct: 682 VKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVC 741

Query: 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINM 251
             F+ M + G+ P   T V +L AC+  G +D G   ++ I    GL+  +     +I++
Sbjct: 742 ATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDL 801

Query: 252 YARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHG 287
             R G +++A      M  + N + W ++++   +HG
Sbjct: 802 LGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHG 838



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 152/339 (44%), Gaps = 61/339 (17%)

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
           + N+D+A  +F++   K    WN  IS ++Q GF++  I               TT    
Sbjct: 52  ATNLDIA--MFEKSGRKKN-HWNPEISCFDQIGFSQITI--------------ETT---- 90

Query: 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
                       GR VH   V   + ++V+   +LINMY + G V  AR +FD+M   N 
Sbjct: 91  ------------GRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNE 138

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG-LVQEGHRVFA 332
           ++W  M+SG    G   E +E F +M   G++P++    ++++AC  +G + +EG +V  
Sbjct: 139 VSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHG 198

Query: 333 SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAML------ 384
            + +  GLL  V     ++ L+G  GL++ + K    V  E P   V  WT+++      
Sbjct: 199 FVAKS-GLLSDVYVSTAILHLYGVYGLVSCSRK----VFEEMPDRNVVSWTSLMVGYSDK 253

Query: 385 ----GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
                   ++K+  LG ++   ++    E+     + +++ ++ G M  V+    I  Q 
Sbjct: 254 GEPEEVIDIYKDESLGRQIIGQVVKSGLESK--LAVENSLISMLGSMGNVDYANYIFDQM 311

Query: 441 GLKKHVGYSTV--------EVDQKNYLFSMGDKSHPNTN 471
             +  + ++++         +++   +FS+  + H   N
Sbjct: 312 SERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVN 350


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/555 (34%), Positives = 333/555 (60%), Gaps = 2/555 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H  ++V+G   ++ +   L+S+    G ++ ++R+   +P  D   +N LI   ++   
Sbjct: 384 LHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDED 443

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCA-HLSILNLGRAVHCHVFVSGYDSDLHVQA 145
              +L  ++ M V  +S +  T  +V+ +C     +L  G+ +H ++  +G++SD HV+ 
Sbjct: 444 PDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKN 503

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
           +L+  YAK  ++  ++ +F+ + +++++ WN+M++    +G  +E + L + MR FGV+ 
Sbjct: 504 SLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSL 563

Query: 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
           D  +    L+A A+L  ++ G+ +H   V  G + +  +  +  +MY++CG + +  ++ 
Sbjct: 564 DQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKML 623

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
                 ++ +W  +IS  G HGY  E    FH M   G++P +VTFV++L+AC+H GLV 
Sbjct: 624 PPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVD 683

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           +G   +  + +++GL P +EH +C++DL GR+G L EA  F+   +  KP   VW ++L 
Sbjct: 684 KGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISK-MPMKPNDLVWRSLLA 742

Query: 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
           +CK+H N D G + AE+L  +EPE+   YV+ SN++A  GR + VE VR  M  K +KK 
Sbjct: 743 SCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKK 802

Query: 446 VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
              S V++  K   F +GD++HP T EIY  L+++    +E+GYV ++  A+ + +EE++
Sbjct: 803 QACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQK 862

Query: 506 EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
           E++L  HSE+LALA+ LM T  G T+RI KNLR+C DCHS  KF+S    R I++RD+ R
Sbjct: 863 EHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYR 922

Query: 566 FHHFKRGSCSCLDYW 580
           FHHF+RG CSC DYW
Sbjct: 923 FHHFERGLCSCKDYW 937



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 182/373 (48%), Gaps = 7/373 (1%)

Query: 16  KAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFN 75
           ++G   +   QVH  +  +G      + T +L L    G ++ ++++F  +P  +   + 
Sbjct: 70  RSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWT 129

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
           +L++  S      + +  Y+ M    +  +  + S VI SC  L   +LGR +   V  S
Sbjct: 130 SLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKS 189

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G +S L V+ +L++      NVD A  +FD+M ++  ++WNS+ + Y QNG  +E+  +F
Sbjct: 190 GLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIF 249

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
           +LMR F    +STT   +L+    +     GR +H  +V  G D  V +  +L+ MYA  
Sbjct: 250 SLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGA 309

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G   +A  +F  M   ++I+W ++++ +   G   +A+ L   M + G   N VTF + L
Sbjct: 310 GRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSAL 369

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
           +AC      ++G R+   +    GL         +V ++G+ G ++E+ +    V+ + P
Sbjct: 370 AACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRR----VLLQMP 424

Query: 376 APAV--WTAMLGA 386
              V  W A++G 
Sbjct: 425 RRDVVAWNALIGG 437



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 141/268 (52%), Gaps = 1/268 (0%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+ +F  +P  +   +NT++    +     + + F+R+M    I PS++  ++++
Sbjct: 6   GRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLV 65

Query: 114 KSCAHL-SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV 172
            +C    S+   G  VH  V  SG  SD++V  A+++ Y     V  +RKVF+ MPD++V
Sbjct: 66  TACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNV 125

Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
           V+W S++ GY   G  +E I ++  MR  GV  +  +   V+++C  L D  LGR +   
Sbjct: 126 VSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQ 185

Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
           +V  GL+  + +  SLI+M    GNV  A  IFD MSE + I+W ++ + Y  +G+  E+
Sbjct: 186 VVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEES 245

Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAH 320
             +F  MR      N+ T   +LS   H
Sbjct: 246 FRIFSLMRRFHDEVNSTTVSTLLSVLGH 273



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 177/371 (47%), Gaps = 12/371 (3%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+   ++ +G     ++   L+S++   G + YA  IF  +   D+  +N++    ++ 
Sbjct: 180 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 239

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +S   +  M   +   ++ T S ++    H+     GR +H  V   G+DS + V 
Sbjct: 240 GHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVC 299

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             L+  YA +     A  VF +MP K +++WNS+++ +  +G + +A+GL   M   G +
Sbjct: 300 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 359

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +  T    LAAC      + GR +H  +V  GL  N ++  +L++MY + G +S++R +
Sbjct: 360 VNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 419

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG-L 323
              M   +V+AW A+I GY       +A+  F  MR  GV  N +T V+VLSAC   G L
Sbjct: 420 LLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL 479

Query: 324 VQEGHRVFASMRQEYGLLPGVE--HHV--CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           ++ G  + A     Y +  G E   HV   ++ ++ + G L+ +      +  +      
Sbjct: 480 LERGKPLHA-----YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL--DNRNIIT 532

Query: 380 WTAMLGACKMH 390
           W AML A   H
Sbjct: 533 WNAMLAANAHH 543



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 128/240 (53%), Gaps = 10/240 (4%)

Query: 151 YAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210
           Y K   V  AR +FD MP ++ V+WN+M+SG  + G   E +  F  M D G+ P S   
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVI 61

Query: 211 VCVLAACAQLGDI-DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
             ++ AC + G +   G  VH F+   GL  +V ++T+++++Y   G VS +R++F+ M 
Sbjct: 62  ASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 121

Query: 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE--- 326
           + NV++WT+++ GY   G   E ++++  MR  GV  N  +   V+S+C   GL+++   
Sbjct: 122 DRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC---GLLKDESL 178

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G ++   + +  GL   +     ++ + G  G ++ A  ++ D + E+   + W ++  A
Sbjct: 179 GRQIIGQVVKS-GLESKLAVENSLISMLGSMGNVDYA-NYIFDQMSERDTIS-WNSIAAA 235



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 133/277 (48%), Gaps = 2/277 (0%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
           A L  G  L+  + +HA+++ AG+     +   L+++    G ++ +Q +F  + + +  
Sbjct: 472 ACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNII 531

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
            +N ++  N+      + L    +M    +S   ++FS  + + A L++L  G+ +H   
Sbjct: 532 TWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLA 591

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI 192
              G++ D  +  A  + Y+K   +    K+     ++S+ +WN +IS   ++G+ +E  
Sbjct: 592 VKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVC 651

Query: 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINM 251
             F+ M + G+ P   T V +L AC+  G +D G   ++ I    GL+  +     +I++
Sbjct: 652 ATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDL 711

Query: 252 YARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHG 287
             R G +++A      M  + N + W ++++   +HG
Sbjct: 712 LGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHG 748



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 8/137 (5%)

Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
           MY + G V  AR +FD+M   N ++W  M+SG    G   E +E F +M   G++P++  
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 311 FVAVLSACAHAG-LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
             ++++AC  +G + +EG +V   + +  GLL  V     ++ L+G  GL++ + K    
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKS-GLLSDVYVSTAILHLYGVYGLVSCSRK---- 115

Query: 370 VIGEKPAPAV--WTAML 384
           V  E P   V  WT+++
Sbjct: 116 VFEEMPDRNVVSWTSLM 132


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/489 (41%), Positives = 296/489 (60%), Gaps = 7/489 (1%)

Query: 97  MIVSNISPSNYTFSAVIKSCA-HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155
           M    + P    F A + +C   L+ L LG+ +H  V  +G +S+  V  ALVN Y K+ 
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN---PDSTTCVC 212
            +D A +VF  +  K +V+W +++S Y +    +EA+ LF  M   G++   PD +    
Sbjct: 61  CLDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAF 120

Query: 213 VLAACAQLGDIDLGRWVHEFIVGQGLDV-NVVLATSLINMYARCGNVSKAREIFDMMSEL 271
           +L ACA L     GR  H  I   G D  + VL   +INMY +CGN+  A E+FD MSE 
Sbjct: 121 LLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSER 180

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           + +AWT +ISGY  HG+  E++ +F RM+  G +P+ V+ + VLS C+HAGLV++G   F
Sbjct: 181 DTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFF 240

Query: 332 ASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHK 391
             + +E+G+ PG +H+ CM+DL GR+G L  A   ++ +  +  A   W   L ACK+H 
Sbjct: 241 LDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMN-WAIFLAACKVHS 299

Query: 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTV 451
           + + G   AE +L +EP  P  YV LSNIYA AG  D+V+ VR+ M   GL+K  G S++
Sbjct: 300 DTERGKRAAEKVLELEP-VPAAYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSI 358

Query: 452 EVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRY 511
           EV+ + + F  GDKSHP   EIY  L+ L  +   +GYVP+++  +  + EE++E  L +
Sbjct: 359 EVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQKERLLCF 418

Query: 512 HSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKR 571
           HSEKLA+AFGL+ T  G ++RI+KNLR+C DCH+A KF+S    REI +RD  RFHHF+ 
Sbjct: 419 HSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQD 478

Query: 572 GSCSCLDYW 580
           G CSC DYW
Sbjct: 479 GHCSCGDYW 487



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 153/319 (47%), Gaps = 16/319 (5%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           +H+ ++ AG   +  + T L+++   AG +  A R+F  +   D   +  L+   S+ + 
Sbjct: 33  IHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLGRKDLVSWTALMSAYSREDL 92

Query: 87  STDSLLFYRRMIVSNIS---PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLH 142
             ++L  +R M +  +    P    F+ ++++CA LS    GR  H  +   GYD SD  
Sbjct: 93  YREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGV 152

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           +   ++N Y K  N+  A +VFD M ++  VAW ++ISGY  +G ++E++ +F  M+  G
Sbjct: 153 LGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDG 212

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ--GLDVNVVLATSLINMYARCGNVSK 260
             PD  + +CVL+ C+  G ++ G W     + +  G++        +I++  R G++  
Sbjct: 213 SKPDGVSLLCVLSVCSHAGLVEQG-WDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEA 271

Query: 261 AREIFDMMS-ELNVIAWTAMISGYGMHG---YGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
           A  +   M  +   + W   ++   +H     G  A E     +   + P    +V++ +
Sbjct: 272 AEVMIRRMPFQATAMNWAIFLAACKVHSDTERGKRAAE-----KVLELEPVPAAYVSLSN 326

Query: 317 ACAHAGLVQEGHRVFASMR 335
             A AG   +  RV ++M+
Sbjct: 327 IYAAAGEWDQVDRVRSAMK 345


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/598 (35%), Positives = 334/598 (55%), Gaps = 22/598 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP+   + ++L A   L  L+   ++HAH+         S+   L++       +  A+ 
Sbjct: 324 QPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKARE 383

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYT----FSAVIKSCA 117
           IF  +   D   +N+++    +          ++RM++S I P +++    F+A  +  +
Sbjct: 384 IFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSS 443

Query: 118 HLSILNLGRAVHCHVF--VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
            L     G+ +H ++   ++     L V  A++  YAK N +  A K+F  M ++   +W
Sbjct: 444 GLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSW 503

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV- 234
           N+M+ GY +N   ++ + +F  +   G   D  +   +L +C +L  + LG+  H  +  
Sbjct: 504 NAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAK 563

Query: 235 ---GQGL---DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
              GQ     D  + +  +LI+MY++CG++  A ++F  M   +V +WTAMI+G   HG 
Sbjct: 564 LFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGL 623

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             EA++LF RM+  G++PN VTF+A+L ACAH GLVQEG   F SM  +YGL P +EH+ 
Sbjct: 624 AVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYA 683

Query: 349 CMVDLFGRAGLLNEAYKFVK-DVIGEKP----APAVWTAMLGACKMHKNFDLGVEVAEHL 403
           CM+DLFGR+G  + A   V+  +   KP       +W  +LGAC   K  DLGVE A  +
Sbjct: 684 CMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQLDLGVEAATKI 743

Query: 404 LSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMG 463
           L +EPE+   Y++L+N+YA +G  +    VR  M  KGL+K VG S ++   + ++F  G
Sbjct: 744 LELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGNRRHVFVAG 803

Query: 464 DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLM 523
           D  HP   EIY+ L +L   CR  GYVP +E  +H+++E E+E  L  HSEKLA++FGL+
Sbjct: 804 DVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVDETEKEAILGCHSEKLAVSFGLL 863

Query: 524 RTSPGM-TIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
               G   IR++KNLR+C DCHS +KF S+   REI++RD  RFH F+ GSCSC DYW
Sbjct: 864 NCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREILLRDSQRFHLFRDGSCSCGDYW 921



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 170/330 (51%), Gaps = 11/330 (3%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP+  +  ++LK       +   +Q+H   I  G+G    +    +++    G +  AQR
Sbjct: 118 QPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQR 177

Query: 62  IF--FCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMI-VSNISPSNYTFSAVIKSCAH 118
           +F    + + D  L+N++I          + L  + +M+ V  ++P+  T+++V+ +C  
Sbjct: 178 VFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGS 237

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
                 G  VH  +  +G ++  ++  +LV FY K  N+  A ++F+R+  K VV+WN+M
Sbjct: 238 SGEEKYGAMVHGRIIKAGLEAT-NLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAM 296

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFG--VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
           I+  EQ G  + A+GLF  M      V P+  T + +L+A + L  +  GR +H  I   
Sbjct: 297 IAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRL 356

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
            L+V+  +  SLI  Y++C  V KAREIF+ +   ++I+W +M++GY  +       ++F
Sbjct: 357 SLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIF 416

Query: 297 HRMRAHGVRPNNVTFVAVLSACAH--AGLV 324
            RM   G+ P++ +   + +A +   +GL+
Sbjct: 417 KRMMLSGIEPDSHSLTIIFNAASRDSSGLI 446



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 185/382 (48%), Gaps = 25/382 (6%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH  +I AG   + ++   L++     G + +A ++F  I   D   +N +I  N +   
Sbjct: 247 VHGRIIKAGL-EATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGE 305

Query: 87  STDSLLFYRRMIVSN--ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             ++L  +RRM+     + P+  TF +++ + + LS L  GR +H H+F    + D  + 
Sbjct: 306 GENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSIT 365

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            +L+ FY+K   V  AR++F+R+  + +++WNSM++GYEQN        +F  M   G+ 
Sbjct: 366 NSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIE 425

Query: 205 PDSTTCVCVLAACAQ----LGDIDLGRWVHEFIVGQGLDVNVVLATS--LINMYARCGNV 258
           PDS +   +  A ++    L     G+ +H +I+ +     V L+ S  ++ MYA+   +
Sbjct: 426 PDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRI 485

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
           + A +IF  M   +  +W AM+ GY  +    + + +F  +   G   ++V+   +L++C
Sbjct: 486 ADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSC 545

Query: 319 AHAGLVQEGHRVFASMRQEYGLLPG---------VEHHVCMVDLFGRAGLLNEAYK-FVK 368
                +Q G +  A + +   L  G         +  +  ++ ++ + G + +A + F+K
Sbjct: 546 GRLVSLQLGKQFHAVVAK---LFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLK 602

Query: 369 DVIGEKPAPAVWTAMLGACKMH 390
               E+     WTAM+  C  H
Sbjct: 603 ---MERKDVFSWTAMITGCAHH 621



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 154/340 (45%), Gaps = 31/340 (9%)

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           +  A+++FD  P++ V++W+++I+ Y + G   +A GLF  M   G+ P+  +   +L  
Sbjct: 71  LKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKV 130

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS--ELNVI 274
               G+I L R +H + +  G  ++  +  + I MY+RCG +  A+ +FD  S   L+++
Sbjct: 131 SCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDIL 190

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
            W ++I+ Y  HG   E + LF +M + G V P  +T+ +V++AC  +G  +E +     
Sbjct: 191 LWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSG--EEKYGAMVH 248

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF 393
            R     L        +V  +G+ G L  A +  + +   +     W AM+ A +     
Sbjct: 249 GRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERI--SRKDVVSWNAMIAANEQRGEG 306

Query: 394 DLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVE 452
           +  + +   +L VEP   P     LS + A++G       +  +   + +  H+   ++E
Sbjct: 307 ENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSG-------LSALRCGREIHAHIFRLSLE 359

Query: 453 VDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPE 492
           VD                  I   L     +CRE G   E
Sbjct: 360 VD----------------TSITNSLITFYSKCREVGKARE 383


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/557 (35%), Positives = 330/557 (59%), Gaps = 23/557 (4%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + VH+  I + + R  +    LL +    G +  A R+F  +   +   + ++I   ++ 
Sbjct: 271 KAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             S  ++   ++M    +       ++++ +CA    L+ G+ VH ++  +  +S+L V 
Sbjct: 331 GRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVC 390

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL++ Y K  ++D A  VF  M  K +++WN+MI                       + 
Sbjct: 391 NALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGE---------------------LK 429

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PDS T  C+L ACA L  ++ G+ +H +I+  G   +  +A +L+++Y +CG +  AR +
Sbjct: 430 PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 489

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           FDM+   ++++WT MISGYGMHGYG EA+  F+ MR  G+ P+ V+F+++L AC+H+GL+
Sbjct: 490 FDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           ++G R F  M+ ++ + P +EH+ CMVDL  R G L++AY+F+ + +   P   +W A+L
Sbjct: 550 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFI-ETLPIAPDATIWGALL 608

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
             C+++ + +L  +VAE +  +EPEN G+YV+L+NIYA A + + V+ +R  + +KGL+K
Sbjct: 609 CGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRK 668

Query: 445 HVGYSTVEVDQKNYLFSMGDK-SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           + G S +E+  K  LF  G+  SHP++ +I   L ++  + +E GY P+++ A+   +E 
Sbjct: 669 NPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEM 728

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
           ++E +L  HSEKLA+AFGL+   P  T+R+ KNLR+C DCH   KF+S  T REI++RD 
Sbjct: 729 QKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDS 788

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFHHFK G CSC  +W
Sbjct: 789 NRFHHFKNGYCSCRGFW 805



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 165/335 (49%), Gaps = 30/335 (8%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A  +F  +   D   +N++I        +   L  Y++M+   I     T  +V+  CA+
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
              L+LG+AVH     S ++  ++    L++ Y+K  ++D A +VF++M +++VV+W SM
Sbjct: 264 SGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           I+GY ++G +  AI L   M   GV  D      +L ACA+ G +D G+ VH++I    +
Sbjct: 324 IAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           + N+ +  +L++MY +CG++  A  +F  M   ++I+W  MI                  
Sbjct: 384 ESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIG----------------- 426

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-MRQEYGLLPGVEHHV--CMVDLFG 355
                ++P++ T   +L ACA    ++ G  +    +R  Y      + HV   +VDL+ 
Sbjct: 427 ----ELKPDSRTMACILPACASLSALERGKEIHGYILRNGY----SSDRHVANALVDLYV 478

Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           + G+L  A + + D+I  K   + WT M+    MH
Sbjct: 479 KCGVLGLA-RLLFDMIPSKDLVS-WTVMISGYGMH 511



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 136/264 (51%), Gaps = 23/264 (8%)

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
           + A ++FD++ D+ V++WNSMISGY  NG  +  + ++  M   G++ D  T + VL  C
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGC 261

Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
           A  G + LG+ VH   +    +  +  + +L++MY++CG++  A  +F+ M E NV++WT
Sbjct: 262 ANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG---HRVFASM 334
           +MI+GY   G    A+ L  +M   GV+ + V   ++L ACA +G +  G   H    + 
Sbjct: 322 SMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKAN 381

Query: 335 RQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYK-----FVKDV------IGE-KPAPAVW 380
             E  L       VC  ++D++ + G ++ A        VKD+      IGE KP     
Sbjct: 382 NMESNLF------VCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTM 435

Query: 381 TAMLGACKMHKNFDLGVEVAEHLL 404
             +L AC      + G E+  ++L
Sbjct: 436 ACILPACASLSALERGKEIHGYIL 459



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 56/272 (20%)

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           R  D+ V  +N+ I  + Q G  + A+ L  + +   +  ++ T   VL  CA    +  
Sbjct: 60  RTIDRQVTDYNAKILHFCQLGNLENAMELVCMCQKSEL--ETKTYSSVLQLCAGSKSLTD 117

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN------------- 272
           G+ VH  I    + V+ VL   L+++YA CG++ + R +FD M + N             
Sbjct: 118 GKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK 177

Query: 273 --------------------------------------VIAWTAMISGYGMHGYGTEAVE 294
                                                 VI+W +MISGY  +G     +E
Sbjct: 178 IGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLE 237

Query: 295 LFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354
           ++ +M   G+  +  T ++VL  CA++G +  G  V  S+  +      +     ++D++
Sbjct: 238 IYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVH-SLAIKSTFERRINFSNTLLDMY 296

Query: 355 GRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
            + G L+ A + V + +GE+   + WT+M+  
Sbjct: 297 SKCGDLDGALR-VFEKMGERNVVS-WTSMIAG 326



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 5/182 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P S     IL A   L  L+   ++H +++  GY   R +   L+ L    G +  A+ 
Sbjct: 429 KPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARL 488

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  IPS D   +  +I       +  +++  +  M  + I P   +F +++ +C+H  +
Sbjct: 489 LFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGL 548

Query: 122 LNLG-RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP-DKSVVAWNSMI 179
           L  G R  +        +  L   A +V+  +++ N+  A +  + +P       W +++
Sbjct: 549 LEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALL 608

Query: 180 SG 181
            G
Sbjct: 609 CG 610


>gi|302781642|ref|XP_002972595.1| hypothetical protein SELMODRAFT_97496 [Selaginella moellendorffii]
 gi|300160062|gb|EFJ26681.1| hypothetical protein SELMODRAFT_97496 [Selaginella moellendorffii]
          Length = 606

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/587 (36%), Positives = 325/587 (55%), Gaps = 10/587 (1%)

Query: 3   NKQPHSP-----AYEAILK--AGPRLKP-LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAG 54
            +QPH P     A E +L   A  R  P   Q+HA ++  G  RSR +  KL+      G
Sbjct: 21  QRQPHPPGLVREAVELLLHRCAAERALPQAHQLHALMLATGALRSRYLSNKLVQAYGQCG 80

Query: 55  FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114
            +  A  +F C P P+ F +  LI    +      +L  YR M +    P  +  SA+  
Sbjct: 81  DVESAHAVFACQPDPNVFSWMMLISACLRNALPRAALGHYRAMQLRGCHPDAHVVSAIFC 140

Query: 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
           + A  + L LGR++   +  +    D  V  +L+N Y +   +D   + F  MP +  V+
Sbjct: 141 AVADTANLELGRSITAPLASTAMLHDPVVANSLLNMYRRCGGMDDFERAFWAMPSRDEVS 200

Query: 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST-TCVCVLAACAQLGDIDLGRWVHEFI 233
           W +M++G  Q G    A+ L  +M   G    S  T   ++ AC  L  I  GR +H+ I
Sbjct: 201 WTTMLAGRIQCGREASALELLRVMDQDGFRITSALTFATLVDACGNLSAIAQGRHLHDRI 260

Query: 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
           +  G+ ++VVL T+L+NMYA+CG V +ARE+FD   E N I +++M+  Y  +G+  +A+
Sbjct: 261 ITSGVCIDVVLHTALLNMYAKCGRVDEARELFDQTLEPNNITFSSMVVAYARNGHFGDAL 320

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
           +LF  M   G +P++VTF  VL AC+H G V +    F ++  + G+    EH  C VDL
Sbjct: 321 KLFWSMEQDGYKPDSVTFTHVLYACSHGGFVDQAWHYFTTLEPDRGIPLVAEHFGCAVDL 380

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413
             RAG L +A KF+ + +   P    W ++L AC++H+N ++G   AEH+  + P   G 
Sbjct: 381 LARAGWLADAEKFL-NRMPIPPDSVSWMSLLQACRIHRNVEIGARAAEHVFRLAPHRAGP 439

Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEI 473
           Y +LSNIY+ AG+ D    V+ +M  +G+KK  G S +E++ K   F +GD  HP+  +I
Sbjct: 440 YSLLSNIYSDAGKWDMAAKVQKLMRDRGIKKPGGRSWIEINGKTSEFIVGDSWHPDLVQI 499

Query: 474 YQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRI 533
            Q +  +    +E GYVP+++  +H+ EEEE+E  L +HSEKLA+  GL++T P  TI I
Sbjct: 500 CQEIQRVSKVMKEHGYVPDTKQVLHDAEEEEKEDILYFHSEKLAIGLGLIKTPPKTTISI 559

Query: 534 VKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           VKN+R+C DCH+A K IS  T R+I++RD   FHH + G CSC DYW
Sbjct: 560 VKNIRVCPDCHTAAKVISKVTERKIVIRDINLFHHMEDGKCSCRDYW 606


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/536 (38%), Positives = 315/536 (58%), Gaps = 9/536 (1%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LLS     G I  A+R+F  +P  D   +NT++   SK   S ++   +R M V N    
Sbjct: 83  LLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSW 142

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           N   +A+  S    +  +L R        +   +D  +  A+V+ Y  + NV  A + F 
Sbjct: 143 NAMVAALACSGDMGAAEDLFRN-------APEKTDAILWTAMVSGYMDTGNVQKAMEFFG 195

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM-RDFGVNPDSTTCVCVLAACAQLGDID 224
            MP +++V+WN++++GY +N  A +A+ +F  M  D  V P+++T   VL  C+ L  + 
Sbjct: 196 AMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALG 255

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
            GR VH++ +   L  NV + TSL++MY +CG+++ A ++FD MS  +++AW AMISGY 
Sbjct: 256 FGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYA 315

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344
            HG G +A++LF +M+  GV P+ +T +AVL+AC H GL   G + F +M++ Y + P +
Sbjct: 316 QHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQI 375

Query: 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404
           +H+ CMVDL  RAGLL  A   +  +  E P P+ +  +L AC+++KN +     A  L+
Sbjct: 376 DHYSCMVDLLCRAGLLERAVNMIHSMPFE-PHPSAYGTLLTACRVYKNLEFAEFAARKLI 434

Query: 405 SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
             +P+N G YV L+NIYA+A +   V  VR  M    + K  GYS +E+    + F   D
Sbjct: 435 EQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSND 494

Query: 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMR 524
           + HP    I+  LD L    +  GYVP+ + A+H++E+  +   L  HSEKLA+AFGL+ 
Sbjct: 495 RLHPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSEKLAIAFGLIS 554

Query: 525 TSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           TSPGMT+RI KNLR+C DCH+A K IS   +REII+RD  RFHHF+ G CSC DYW
Sbjct: 555 TSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           + V   +L++ +  CG++  AR +F  M   +V +W  M+SG   +G   EA  +F  M 
Sbjct: 76  DTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMP 135

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
                 N V++ A+++A A +G +     +F
Sbjct: 136 VR----NAVSWNAMVAALACSGDMGAAEDLF 162



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 3/124 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           QP++    ++L     L  L   +QVH   +     R+ ++ T LLS+ C  G +  A +
Sbjct: 235 QPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACK 294

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  + + D   +N +I   ++      ++  + +M    + P   T  AV+ +C H  +
Sbjct: 295 VFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGL 354

Query: 122 LNLG 125
            + G
Sbjct: 355 CDFG 358


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/560 (35%), Positives = 318/560 (56%), Gaps = 8/560 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRN 81
           QQ+H+ +I   +  +  +   LL        +  A+++F  +P  D   +N +I     +
Sbjct: 230 QQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWD 289

Query: 82  SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL 141
            K  ++ D    +R +  +      + F+ ++   ++     +GR +H    V+  DS++
Sbjct: 290 GKHKYAFD---LFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEI 346

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
            V  +LV+ YAK    + A  +F  +  +S V W +MIS Y Q GF +E + LFN MR  
Sbjct: 347 LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQA 406

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
            V  D  T   +L A A +  + LG+ +H FI+  G   NV   ++L+++YA+CG++  A
Sbjct: 407 SVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDA 466

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
            + F  M + N+++W AMIS Y  +G     ++ F  M   G++P++V+F+ VLSAC+H+
Sbjct: 467 VQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHS 526

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
           GLV+EG   F SM Q Y L P  EH+  +VD+  R+G  NEA K + ++  + P   +W+
Sbjct: 527 GLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPID-PDEIMWS 585

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEP-ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
           ++L AC++HKN +L    A+ L ++E   +   YV +SNIYA AG+ + V  V   M  +
Sbjct: 586 SVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDR 645

Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
           G+KK   YS VE+  + ++FS  D+ HP   EI + +D L     E GY P++  A+H  
Sbjct: 646 GVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNE 705

Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
           +E+ +  SL+YHSE+LA+AF L+ T  G  I ++KNLR C+DCH+AIK IS    REI V
Sbjct: 706 DEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITV 765

Query: 561 RDRLRFHHFKRGSCSCLDYW 580
           RD  RFHHF+ G CSC D+W
Sbjct: 766 RDSTRFHHFRDGFCSCGDFW 785



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 171/365 (46%), Gaps = 42/365 (11%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           + QV   +I  GY     +   L+   C +  +  A ++F  +P  DSF           
Sbjct: 163 ITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSF----------- 211

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
                                   TF+AV+ +   L  + LG+ +H  V  + +  ++ V
Sbjct: 212 ------------------------TFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFV 247

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             AL++FY+K ++V  ARK+FD MP++  V++N +ISGY  +G  K A  LF  ++    
Sbjct: 248 SNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAF 307

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           +        +L+  +   D ++GR +H   +    D  +++  SL++MYA+CG   +A  
Sbjct: 308 DRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEM 367

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           IF  ++  + + WTAMIS Y   G+  E ++LF++MR   V  +  TF ++L A A    
Sbjct: 368 IFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIAS 427

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WT 381
           +  G ++ + + +  G +  V     ++D++ + G + +A +       E P   +  W 
Sbjct: 428 LSLGKQLHSFIIKS-GFMSNVFSGSALLDVYAKCGSIKDAVQ----TFQEMPDRNIVSWN 482

Query: 382 AMLGA 386
           AM+ A
Sbjct: 483 AMISA 487



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 156/376 (41%), Gaps = 58/376 (15%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           V  +++++GY +S              G +  A+++F  +    +  +  LI   S+ N 
Sbjct: 79  VSTNMMISGYVKS--------------GNLGEARKLFDGMVERTAVTWTILIGGYSQLNQ 124

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
             ++   + +M      P   TF  ++  C    + N    V   +   GYDS L V   
Sbjct: 125 FKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNT 184

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           LV+ Y KSN +D+A ++F  MP+                                    D
Sbjct: 185 LVDSYCKSNRLDLACQLFKEMPE-----------------------------------ID 209

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
           S T   VL A   L DI LG+ +H F++      NV ++ +L++ Y++  +V  AR++FD
Sbjct: 210 SFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFD 269

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            M E + +++  +ISGY   G    A +LF  ++          F  +LS  ++    + 
Sbjct: 270 EMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEM 329

Query: 327 GHRVFAS---MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           G ++ A       +  +L G      +VD++ + G   EA     ++      P  WTAM
Sbjct: 330 GRQIHAQTIVTTADSEILVGNS----LVDMYAKCGKFEEAEMIFTNLTHRSAVP--WTAM 383

Query: 384 LGACKMHKNFDLGVEV 399
           + A      ++ G+++
Sbjct: 384 ISAYVQKGFYEEGLQL 399



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 4/117 (3%)

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G +PD++     +    + G++   R + E +  +    N V    +I+ Y + GN+ +A
Sbjct: 42  GFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHK----NTVSTNMMISGYVKSGNLGEA 97

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
           R++FD M E   + WT +I GY       EA ELF +M+  G  P+ VTFV +LS C
Sbjct: 98  RKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGC 154


>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
          Length = 660

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/563 (39%), Positives = 333/563 (59%), Gaps = 11/563 (1%)

Query: 27  VHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           VH  L      RS   L T+L+      G +  A+++F   P    F++N L+   + A+
Sbjct: 100 VHRRLKADPVFRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALAD 159

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSC-----AHLSILNLGRAVHCHVFVSGYDSD 140
              ++L     M    +   +Y+++  +K+C     +H+    L R +H H    GY   
Sbjct: 160 HGEEALARLADMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLH 219

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM-- 198
            HV   L++ YAK   V  A  VF  MP+++VV+W +MI  Y +N    +AI LF  M  
Sbjct: 220 THVATTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVA 279

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
            D  + P+S T VC+L A A +  +  G+ +H +I+ +G D  V +  +L+ MY +CG +
Sbjct: 280 SDEDLVPNSVTIVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCL 339

Query: 259 SKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
              R IFD++    +V++W  +ISGYGMHG+G EAV++F  M   GV PN +TF++VL A
Sbjct: 340 EAGRHIFDLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGA 399

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           C+HAGLV EG R+F SM  +Y + P  EH+ CMVDL GRAG L+EA + ++  +  +P+P
Sbjct: 400 CSHAGLVDEGKRLFESM-VDYNVTPRAEHYACMVDLLGRAGHLDEAVELIQG-MHIRPSP 457

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
            VW ++LGAC++H++ +        L  +EP N G+YV+L++IYA A     V V+++++
Sbjct: 458 QVWGSLLGACRIHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLL 517

Query: 438 IQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM 497
            +  L+K  G S +EV ++ ++F   D  +P   E+   + E + + +  GYVP++ + +
Sbjct: 518 EEHALEKVPGCSWIEVKKRLHMFVSVDNKNPQIEELQALIGEFVTQMKNDGYVPDTGAVL 577

Query: 498 HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNRE 557
           +++EEEE+E  L  HSEKLA+AFGL+ T  G  IRI KNLR+C DCHS  KFIS    RE
Sbjct: 578 YDIEEEEKEKILLGHSEKLAVAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAERE 637

Query: 558 IIVRDRLRFHHFKRGSCSCLDYW 580
           IIVRD  RFHHF+ G CSC DYW
Sbjct: 638 IIVRDVNRFHHFRDGICSCGDYW 660


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/554 (35%), Positives = 324/554 (58%), Gaps = 2/554 (0%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH + +  G     S+   LL +  +        +IF  +   +   +  +I   ++A  
Sbjct: 107 VHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGH 166

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
                  ++ M +  I P  +  ++ + + A    L  G++VH +   +G +  L V  A
Sbjct: 167 FDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANA 226

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L+  Y K   ++ AR +FD +  K  ++WN++I GY ++  A EA  LFN M    + P+
Sbjct: 227 LMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEML-LQLRPN 285

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
           + T  C+L A A L  ++ GR +H + V +G   +  +A +L++MY +CG +  AR +FD
Sbjct: 286 AVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFD 345

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
           M++  N+I+WT MI+GYGMHG G +A+ LF +M+  G++P+  +F A+L AC+H+GL  E
Sbjct: 346 MLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDE 405

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G R F +MR E+ + P ++H+ CMVDL    G L EAY+F++ +  E P  ++W ++L  
Sbjct: 406 GWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIE-PDSSIWVSLLRG 464

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C++H+N  L  +VAE +  +EPEN G+YV+L+NIYA A R + V  ++N +  +GL+++ 
Sbjct: 465 CRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENT 524

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
           G S +EV  K ++F   +++HP    I ++LD++  R +E G+ P+ + A+   ++   +
Sbjct: 525 GCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHD 584

Query: 507 YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
            +L  HS KLA+AFG++  S G  IR+ KN R+C  CH A KFIS    REII+RD  RF
Sbjct: 585 EALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRF 644

Query: 567 HHFKRGSCSCLDYW 580
           HHF+ G CSC  YW
Sbjct: 645 HHFEEGRCSCRGYW 658



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 175/365 (47%), Gaps = 6/365 (1%)

Query: 27  VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
           VH +L+  G+G   ++   L+S    +  I  A  +F  +P  D   +N++I   +    
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGL 65

Query: 87  STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146
              ++  + RM +      + T  +V+ +C       +G  VH +   +G  S+  +  A
Sbjct: 66  YDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNA 125

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++ Y+  ++     K+F  M  K+VV+W +MI+ Y + G   +  GLF  M   G+ PD
Sbjct: 126 LLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPD 185

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
                  L A A    +  G+ VH + +  G++  + +A +L+ MY +CG + +AR IFD
Sbjct: 186 VFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFD 245

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
            +++ + I+W  +I GY       EA  LF+ M    +RPN VT   +L A A    ++ 
Sbjct: 246 HVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLER 304

Query: 327 GHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
           G  + A ++R+ Y     V +   +VD++ + G L  A +   D++  K   + WT M+ 
Sbjct: 305 GREMHAYAVRRGYLEDNFVAN--ALVDMYVKCGALLLARRLF-DMLTNKNLIS-WTIMIA 360

Query: 386 ACKMH 390
              MH
Sbjct: 361 GYGMH 365



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 137/266 (51%), Gaps = 11/266 (4%)

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G  VH ++   G+ +   V  AL++FYAKSN ++ A  VFD MP + +++WNS+I G   
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           NG   +A+ LF  M   G   DSTT + V+ AC Q     +G  VH + V  GL     L
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
             +L++MY+ C +     +IF  M + NV++WTAMI+ Y   G+  +   LF  M   G+
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLL 360
           RP+     + L A A    ++ G  V       Y +  G+E  +     +++++ + G +
Sbjct: 183 RPDVFAITSALDAFAGNESLKHGKSVHG-----YAIRNGIEEVLPVANALMEMYVKCGYM 237

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGA 386
            EA +F+ D + +K   + W  ++G 
Sbjct: 238 EEA-RFIFDHVTKKDTIS-WNTLIGG 261



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 96/218 (44%), Gaps = 11/218 (5%)

Query: 5   QPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P++     IL A   L  L+   ++HA+ +  GY     +   L+ +    G +  A+R
Sbjct: 283 RPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARR 342

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  + + +   +  +I          D++  + +M  S I P   +FSA++ +C+H  +
Sbjct: 343 LFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGL 402

Query: 122 LNLG-RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM---PDKSVVAWNS 177
            + G R  +        +  L   A +V+    + N+  A +  + M   PD S+  W S
Sbjct: 403 RDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSI--WVS 460

Query: 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
           ++ G   +   K A  +  ++  F + P++T    +LA
Sbjct: 461 LLRGCRIHRNVKLAEKVAEMV--FELEPENTGYYVLLA 496


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/556 (38%), Positives = 311/556 (55%), Gaps = 1/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H  +I A       +   L+ +     F+  A+++F  +   D  L N LI   S  
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHG 382

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++L  +  +    +  +  T +AV+KS A L   +  R VH      G+  D HV 
Sbjct: 383 GRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVV 442

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             L++ Y K + +  A +VF+      ++A  SMI+   Q    + AI LF  M   G+ 
Sbjct: 443 NGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLE 502

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD      +L ACA L   + G+ VH  ++ +    +     +L+  YA+CG++  A   
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELA 562

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  + E  V++W+AMI G   HG+G  A+ELF RM   G+ PN++T  +VL AC HAGLV
Sbjct: 563 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 622

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            E  R F SM++ +G+    EH+ CM+DL GRAG L++A + V  +  +  A ++W A+L
Sbjct: 623 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANA-SIWGALL 681

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GA ++HK+ +LG   AE L  +EPE  G +V+L+N YA AG  + V  VR +M    +KK
Sbjct: 682 GASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKK 741

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
               S +EV  K + F +GDKSHP T EIY  L EL     +AG+VP  +  +H+L+  E
Sbjct: 742 EPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSE 801

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E  L +HSE+LA+AF L+ T PG  IR+ KNLR+C DCH A KFIS   +REII+RD  
Sbjct: 802 KELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDIN 861

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF+ G+CSC DYW
Sbjct: 862 RFHHFRDGTCSCGDYW 877



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 142/535 (26%), Positives = 245/535 (45%), Gaps = 47/535 (8%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           A   +LK  P  +   QVHA  +  G+G    +   L+++    GF+  A+R+F    S 
Sbjct: 105 ALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSE 164

Query: 70  -DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
            ++  +N L+    K +   D++  +  M+ S I P+ + FS V+ +C     +  GR V
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQV 224

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H  V   GYD D+    ALV+ Y K   VD+A  +F++MPD  VV+WN++ISG   NG  
Sbjct: 225 HAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
             AI L   M+  G+ P+  T   +L AC+  G  DLGR +H F++    D +  +   L
Sbjct: 285 HRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           ++MYA+   +  AR++FD M   ++I   A+ISG    G   EA+ LF+ +R  G+  N 
Sbjct: 345 VDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNR 404

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKF 366
            T  AVL + A         +V A +  + G +   + HV   ++D + +   L++A + 
Sbjct: 405 TTLAAVLKSTASLEAASTTRQVHA-LAVKIGFI--FDAHVVNGLIDSYWKCSCLSDANRV 461

Query: 367 VK-----DVI----------------------------GEKPAPAVWTAMLGACKMHKNF 393
            +     D+I                            G +P P V +++L AC     +
Sbjct: 462 FEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAY 521

Query: 394 DLGVEVAEHLLS---VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL---KKHVG 447
           + G +V  HL+    +     G+ ++ +  YA  G ++  E+  + + ++G+      +G
Sbjct: 522 EQGKQVHAHLIKRQFMSDAFAGNALVYT--YAKCGSIEDAELAFSSLPERGVVSWSAMIG 579

Query: 448 YSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
                   K  L   G       N  +  +  ++  C  AG V E++   + ++E
Sbjct: 580 GLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 634



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 174/367 (47%), Gaps = 24/367 (6%)

Query: 17  AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNT 76
           A   L P   +HA L+ +G     S    L+S          A+R F  IP P    +++
Sbjct: 16  AAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSS 73

Query: 77  LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
           L+   S       ++  +  M    +  + +    V+K    +    LG  VH     +G
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATG 130

Query: 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRM-PDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           + SD+ V  ALV  Y     +D AR+VF+    +++ V+WN ++S Y +N    +AI +F
Sbjct: 131 FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVF 190

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             M   G+ P      CV+ AC    +I+ GR VH  +V  G D +V  A +L++MY + 
Sbjct: 191 GEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKM 250

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G V  A  IF+ M + +V++W A+ISG  ++G+   A+EL  +M+  G+ PN  T  ++L
Sbjct: 251 GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSIL 310

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHH------VCMVDLFGRAGLLNEAYK---- 365
            AC+ AG    G       RQ +G +            V +VD++ +   L++A K    
Sbjct: 311 KACSGAGAFDLG-------RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDW 363

Query: 366 -FVKDVI 371
            F +D+I
Sbjct: 364 MFHRDLI 370



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 172/375 (45%), Gaps = 37/375 (9%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++FY+K      AR+ FD +PD   V+W+S+++ Y  NG  + AI  F+ MR  GV  +
Sbjct: 43  LISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
                 VL     + D  LG  VH   +  G   +V +A +L+ MY   G +  AR +F+
Sbjct: 103 EFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 267 MM-SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
              SE N ++W  ++S Y  +    +A+++F  M   G++P    F  V++AC  +  ++
Sbjct: 160 EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIE 219

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK-PAPAV--WTA 382
            G +V A M    G    V     +VD++ + G ++     +  VI EK P   V  W A
Sbjct: 220 AGRQVHA-MVVRMGYDKDVFTANALVDMYMKMGRVD-----IASVIFEKMPDSDVVSWNA 273

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSNIYAL--AGRMDRVEVVRNIMI 438
           ++  C ++ +    +E+   LL ++     P  + + S + A   AG  D    +   MI
Sbjct: 274 LISGCVLNGHDHRAIEL---LLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMI 330

Query: 439 QKGLKK--HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL--------DELMGRCREAG 488
           +       ++G   V++  KN+          +  +++ ++        + L+  C   G
Sbjct: 331 KANADSDDYIGVGLVDMYAKNHFLD-------DARKVFDWMFHRDLILCNALISGCSHGG 383

Query: 489 YVPESESAMHELEEE 503
              E+ S  +EL +E
Sbjct: 384 RHDEALSLFYELRKE 398


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/524 (37%), Positives = 304/524 (58%), Gaps = 3/524 (0%)

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A ++F  +   +   ++ +I   +      ++L ++R M    I P+  TF +++     
Sbjct: 165 AAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTT 224

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK--SNNVDVARKVFDRMPDKSVVAWN 176
            S L     +H  +   G D    +  ALVN Y +  +  +DVA  +   M ++ + AWN
Sbjct: 225 PSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWN 284

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
            +I+GY  +G ++EA+  +  ++   +  D  T + VL AC     +  G+ +H   V  
Sbjct: 285 VLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVEC 344

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
           GLD +V++  +L NMY++CG++  AR IFD M   + ++W  M+  Y  HG   E ++L 
Sbjct: 345 GLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLI 404

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
            +M   GV+ N +TFV+VLS+C+HAGL+ EG + F S+  + G+    EH+ C+VDL GR
Sbjct: 405 RKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGR 464

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
           AG L EA K++  +  E P    W ++LGAC++HK+ D G   A  LL ++P N    V+
Sbjct: 465 AGKLQEAEKYISKMPSE-PEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVV 523

Query: 417 LSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQY 476
           LSNIY+  G       +R  M  + +KK  G S+++V  K + F + D SHP   EIY  
Sbjct: 524 LSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDK 583

Query: 477 LDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKN 536
           ++EL    REAGYVP+++  +H+++EE++E  L YHSEKLA+AFGL+ T    ++ I KN
Sbjct: 584 VEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKN 643

Query: 537 LRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           LR+C DCH+A KFIS  T REI+VRD  RFHHF+ GSCSC DYW
Sbjct: 644 LRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 174/349 (49%), Gaps = 5/349 (1%)

Query: 44  TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
           T L++     G +T A+++F  +P      +N++I   S +  S ++   ++RM      
Sbjct: 49  TALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGER 108

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
               TF +++ +C +   L  G+ V   +  + ++ DL V  AL+  YA+  + + A +V
Sbjct: 109 CDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQV 168

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F RM  K+++ W+++I+ +  +G   EA+  F +M+  G+ P+  T + +L        +
Sbjct: 169 FGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGL 228

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARC--GNVSKAREIFDMMSELNVIAWTAMIS 281
           +    +H  I   GLD    ++ +L+N+Y RC  G +  A  I   M E  + AW  +I+
Sbjct: 229 EELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLIN 288

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           GY +HG   EA+E + R++   +  + VTF++VL+AC  +  + EG ++  S   E GL 
Sbjct: 289 GYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLD 347

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
             V     + +++ + G +  A +   D +  + A + W  ML A   H
Sbjct: 348 SDVIVKNALTNMYSKCGSMENARRIF-DSMPIRSAVS-WNGMLQAYAQH 394



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 6/353 (1%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M++  +  +  TF  V+ S      L  G+ +H  V  S +  D+ V  ALVN Y K  +
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216
           +  ARKVFD MP +SV  WNSMIS Y  +  + EA  +F  M+  G   D  T + +L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           C    ++  G+ V E I     ++++ + T+LI MYARC +   A ++F  M + N+I W
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITW 180

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           +A+I+ +  HG+  EA+  F  M+  G+ PN VTF+++L+       ++E  R+   +  
Sbjct: 181 SAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHL-LIT 239

Query: 337 EYGLLPGVEHHVCMVDLFGR--AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
           E+GL         +V+++GR   G L+ A   ++++  ++     W  ++    +H    
Sbjct: 240 EHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEM--DEQQITAWNVLINGYTLHGRSR 297

Query: 395 LGVEVAEHL-LSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
             +E  + L L   P +   ++ + N    +  +   +++ +  ++ GL   V
Sbjct: 298 EALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDV 350



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 138/270 (51%), Gaps = 4/270 (1%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLV--CDAGFITYAQRIFFCIPSPDSFLFNTLI 78
           L+ L ++H  +   G   + +M   L+++   C+ G +  A+ I   +       +N LI
Sbjct: 228 LEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLI 287

Query: 79  IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
              +    S ++L  Y+R+ +  I     TF +V+ +C   + L  G+ +H +    G D
Sbjct: 288 NGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLD 347

Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
           SD+ V+ AL N Y+K  +++ AR++FD MP +S V+WN M+  Y Q+G ++E + L   M
Sbjct: 348 SDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKM 407

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
              GV  +  T V VL++C+  G I  G ++ H     +G++V       L+++  R G 
Sbjct: 408 EQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGK 467

Query: 258 VSKARE-IFDMMSELNVIAWTAMISGYGMH 286
           + +A + I  M SE  ++ W +++    +H
Sbjct: 468 LQEAEKYISKMPSEPEIVTWASLLGACRVH 497


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/559 (38%), Positives = 322/559 (57%), Gaps = 33/559 (5%)

Query: 54  GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
           G +  A+R+    P  +   + +LI   S+A    D++  +  M+   ++P        +
Sbjct: 185 GLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGAL 244

Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN----------------- 156
            +C+ L  L+LGR +H  V         ++  AL++ YAK  +                 
Sbjct: 245 SACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKP 304

Query: 157 ---------------VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
                          VDVAR +FD+M  + V+ +NSMI+GY  +G  ++A+ LF  MR  
Sbjct: 305 EPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRH 364

Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           G+  D+ T V +L ACA LG +  GR +H  I  + ++ +V L T+L++MY +CG V +A
Sbjct: 365 GMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEA 424

Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
             +F  M E +V  WTAMI+G   +G G +A+E F +M+  G +P +VT++AVL+AC+H+
Sbjct: 425 TAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHS 484

Query: 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381
            L+ EG   F  MR  + L P VEH+ CM+DL  R+GLL+EA   V+  +  +P   +W 
Sbjct: 485 SLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQ-TMPMQPNAVIWG 543

Query: 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441
           ++L AC++HKN DL    AEHLL + PE    YV L NIY  + +    + VR +M ++G
Sbjct: 544 SILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERG 603

Query: 442 LKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELE 501
           +KK  GYS++ V  + + F   D+SHP T EI   ++E+  R +  GY P +     +++
Sbjct: 604 VKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVDVD 663

Query: 502 EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVR 561
           EEE+E +L  HSEK+A+AFGL+   P + I IVKNLR+C DCHSAIK +S   NREIIVR
Sbjct: 664 EEEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLWNREIIVR 723

Query: 562 DRLRFHHFKRGSCSCLDYW 580
           DR RFHHF+ G+CSC D+W
Sbjct: 724 DRSRFHHFRDGACSCNDFW 742



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 203/443 (45%), Gaps = 83/443 (18%)

Query: 19  PR-LKPLQQVHAHLIVAGYGRSRS----MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL 73
           PR ++   Q+HA L  +G    R     +L+ L + +     + Y   +F  +P   +FL
Sbjct: 9   PRSVRQASQLHALLTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHSTTFL 68

Query: 74  FNTLIIRNSKANFSTD-SLLFYRRMIVSNISPSNYTFSAVI------------------K 114
           F+T +    +A+   D  +L  RRM    +    +TF  V                    
Sbjct: 69  FDTALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCLMLHA 128

Query: 115 SCAHLSILNLGRAVH---CHVFVS---------GYD----SDLHVQAALVNFYAKSNNVD 158
           +C    + +    V     H++ S          +D     D  V A ++    +   +D
Sbjct: 129 ACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLD 188

Query: 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218
            AR++  + P+++VV+W S+I+GY + G   +A+  FN M   GV PD    +  L+AC+
Sbjct: 189 EARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACS 248

Query: 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK------------------ 260
           +L ++DLGR +H  +  + + +   L  +LI+MYA+CG++++                  
Sbjct: 249 KLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWN 308

Query: 261 --------------AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
                         AR +FD M   +VI + +MI+GY   G   +A++LF +MR HG+R 
Sbjct: 309 AIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRA 368

Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV----CMVDLFGRAGLLNE 362
           +N T V++L+ACA  G +  G  + AS+ Q       VE  V     ++D++ + G ++E
Sbjct: 369 DNFTVVSLLTACASLGALPHGRALHASIEQRI-----VEEDVYLGTALLDMYMKCGRVDE 423

Query: 363 AYKFVKDVIGEKPAPAVWTAMLG 385
           A   V   +GE+     WTAM+ 
Sbjct: 424 ATA-VFHRMGERDV-HTWTAMIA 444



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 124/265 (46%), Gaps = 2/265 (0%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           + Q  A     G G+       ++   C  G +  A+ +F  + + D   FN++I     
Sbjct: 288 IAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIH 347

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
           +    D+L  + +M    +   N+T  +++ +CA L  L  GRA+H  +     + D+++
Sbjct: 348 SGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYL 407

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             AL++ Y K   VD A  VF RM ++ V  W +MI+G   NG  K+A+  F  M+  G 
Sbjct: 408 GTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGF 467

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRW-VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
            P S T + VL AC+    +D GR   +E      L   V     +I++ AR G + +A 
Sbjct: 468 QPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAM 527

Query: 263 EIFDMMS-ELNVIAWTAMISGYGMH 286
            +   M  + N + W +++S   +H
Sbjct: 528 HLVQTMPMQPNAVIWGSILSACRVH 552


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/556 (38%), Positives = 311/556 (55%), Gaps = 1/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H  +I A       +   L+ +     F+  A+++F  +   D  L N LI   S  
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHG 382

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++L  +  +    +  +  T +AV+KS A L   +  R VH      G+  D HV 
Sbjct: 383 GRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVV 442

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             L++ Y K + +  A +VF+      ++A  SMI+   Q    + AI LF  M   G+ 
Sbjct: 443 NGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLE 502

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           PD      +L ACA L   + G+ VH  ++ +    +     +L+  YA+CG++  A   
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELA 562

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F  + E  V++W+AMI G   HG+G  A+ELF RM   G+ PN++T  +VL AC HAGLV
Sbjct: 563 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 622

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
            E  R F SM++ +G+    EH+ CM+DL GRAG L++A + V  +  +  A ++W A+L
Sbjct: 623 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANA-SIWGALL 681

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GA ++HK+ +LG   AE L  +EPE  G +V+L+N YA AG  + V  VR +M    +KK
Sbjct: 682 GASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKK 741

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
               S +EV  K + F +GDKSHP T EIY  L EL     +AG+VP  +  +H+L+  E
Sbjct: 742 EPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSE 801

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           +E  L +HSE+LA+AF L+ T PG  IR+ KNLR+C DCH A KFIS   +REII+RD  
Sbjct: 802 KELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDIN 861

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHF+ G+CSC DYW
Sbjct: 862 RFHHFRDGTCSCGDYW 877



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 142/535 (26%), Positives = 245/535 (45%), Gaps = 47/535 (8%)

Query: 10  AYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSP 69
           A   +LK  P  +   QVHA  +  G+G    +   L+++    GF+  A+R+F    S 
Sbjct: 105 ALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSE 164

Query: 70  -DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAV 128
            ++  +N L+    K +   D++  +  M+ S I P+ + FS V+ +C     +  GR V
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQV 224

Query: 129 HCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA 188
           H  V   GYD D+    ALV+ Y K   VD+A  +F++MPD  VV+WN++ISG   NG  
Sbjct: 225 HAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
             AI L   M+  G+ P+  T   +L AC+  G  DLGR +H F++    D +  +   L
Sbjct: 285 HRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308
           ++MYA+   +  AR++FD M   ++I   A+ISG    G   EA+ LF+ +R  G+  N 
Sbjct: 345 VDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNR 404

Query: 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC--MVDLFGRAGLLNEAYKF 366
            T  AVL + A         +V A +  + G +   + HV   ++D + +   L++A + 
Sbjct: 405 TTLAAVLKSTASLEAASTTRQVHA-LAVKIGFI--FDAHVVNGLIDSYWKCSCLSDANRV 461

Query: 367 VK-----DVI----------------------------GEKPAPAVWTAMLGACKMHKNF 393
            +     D+I                            G +P P V +++L AC     +
Sbjct: 462 FEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAY 521

Query: 394 DLGVEVAEHLLS---VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL---KKHVG 447
           + G +V  HL+    +     G+ ++ +  YA  G ++  E+  + + ++G+      +G
Sbjct: 522 EQGKQVHAHLIKRQFMSDAFAGNALVYT--YAKCGSIEDAELAFSSLPERGVVSWSAMIG 579

Query: 448 YSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
                   K  L   G       N  +  +  ++  C  AG V E++   + ++E
Sbjct: 580 GLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 634



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 175/367 (47%), Gaps = 24/367 (6%)

Query: 17  AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNT 76
           A   L P   +HA L+ +G     S    L+S          A+R+F  IP P    +++
Sbjct: 16  AAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSS 73

Query: 77  LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
           L+   S       ++  +  M    +  + +    V+K    +    LG  VH     +G
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATG 130

Query: 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRM-PDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           + SD+ V  ALV  Y     +D AR+VF+    +++ V+WN ++S Y +N    +AI +F
Sbjct: 131 FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVF 190

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255
             M   G+ P      CV+ AC    +I+ GR VH  +V  G D +V  A +L++MY + 
Sbjct: 191 GEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKM 250

Query: 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315
           G V  A  IF+ M + +V++W A+ISG  ++G+   A+EL  +M+  G+ PN  T  ++L
Sbjct: 251 GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSIL 310

Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHH------VCMVDLFGRAGLLNEAYK---- 365
            AC+ AG    G       RQ +G +            V +VD++ +   L++A K    
Sbjct: 311 KACSGAGAFDLG-------RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDW 363

Query: 366 -FVKDVI 371
            F +D+I
Sbjct: 364 MFHRDLI 370



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 173/375 (46%), Gaps = 37/375 (9%)

Query: 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206
           L++FY+K      AR+VFD +PD   V+W+S+++ Y  NG  + AI  F+ MR  GV  +
Sbjct: 43  LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
                 VL     + D  LG  VH   +  G   +V +A +L+ MY   G +  AR +F+
Sbjct: 103 EFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 267 MM-SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
              SE N ++W  ++S Y  +    +A+++F  M   G++P    F  V++AC  +  ++
Sbjct: 160 EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIE 219

Query: 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK-PAPAV--WTA 382
            G +V A M    G    V     +VD++ + G ++     +  VI EK P   V  W A
Sbjct: 220 AGRQVHA-MVVRMGYDKDVFTANALVDMYMKMGRVD-----IASVIFEKMPDSDVVSWNA 273

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSNIYAL--AGRMDRVEVVRNIMI 438
           ++  C ++ +    +E+   LL ++     P  + + S + A   AG  D    +   MI
Sbjct: 274 LISGCVLNGHDHRAIEL---LLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMI 330

Query: 439 QKGLKK--HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL--------DELMGRCREAG 488
           +       ++G   V++  KN+          +  +++ ++        + L+  C   G
Sbjct: 331 KANADSDDYIGVGLVDMYAKNHFLD-------DARKVFDWMFHRDLILCNALISGCSHGG 383

Query: 489 YVPESESAMHELEEE 503
              E+ S  +EL +E
Sbjct: 384 RHDEALSLFYELRKE 398


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/557 (35%), Positives = 327/557 (58%), Gaps = 6/557 (1%)

Query: 26  QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKAN 85
           Q+H +++ +G      +   L++    +     ++R F   P   +  ++++I   ++  
Sbjct: 36  QLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFAQNE 95

Query: 86  FSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
               SL F R+M+  ++ P ++   +  KSC  LS  ++G++VHC    +GYD+D+ V +
Sbjct: 96  LPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYDADVFVGS 155

Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN--LMRDFGV 203
           +LV+ YAK   +  ARK+FD MP ++VV W+ M+ GY Q G  +EA+ LF   L  +  V
Sbjct: 156 SLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAV 215

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
           N  S + V  ++ CA    ++LGR +    +    D +  + +SL+++Y++CG++  A +
Sbjct: 216 NDYSFSTV--ISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQ 273

Query: 264 IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
           +FD +   N+  W AM+     H +  + +ELF RM+  G++PN +TF+ VL+AC+HAGL
Sbjct: 274 VFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGL 333

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           V EG   F  M+ E  + P  +H+  +VD+ GRAG L EA + V ++  + P  +VW A+
Sbjct: 334 VDEGKYYFDLMK-ESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMPID-PTESVWGAL 391

Query: 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443
           L +C +HKN +L    A+ +  + P + G ++ LSN YA  GR +     R ++  +G K
Sbjct: 392 LTSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEK 451

Query: 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEE 503
           K  G S VE   K + F+ G++ H  + EIY+ L EL     +AGYV ++   + E++ +
Sbjct: 452 KETGLSWVEERNKVHTFAAGERRHERSKEIYEKLAELGEEMEKAGYVADTSYVLREVDGD 511

Query: 504 EREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDR 563
           E+  ++RYHSE+LA+AFGL+       IR++KNLR+C DCH+AIKF+S+ T R IIVRD 
Sbjct: 512 EKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSICTRRVIIVRDN 571

Query: 564 LRFHHFKRGSCSCLDYW 580
            RFH F+ G CSC DYW
Sbjct: 572 NRFHRFEDGKCSCNDYW 588



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 153/317 (48%), Gaps = 10/317 (3%)

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G  +H ++  SG      V   L+NFY+KS     +R+ F+  P KS   W+S+IS + Q
Sbjct: 34  GLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFAQ 93

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           N     ++     M    + PD         +C  L   D+G+ VH   +  G D +V +
Sbjct: 94  NELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYDADVFV 153

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
            +SL++MYA+CG +  AR++FD M   NV+ W+ M+ GY   G   EA+ LF       +
Sbjct: 154 GSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENL 213

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFA-SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
             N+ +F  V+S CA++ L++ G ++    ++  +     V     +V L+ + G L  A
Sbjct: 214 AVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSS--LVSLYSKCGDLEGA 271

Query: 364 YKFVKDVIGEKPAP--AVWTAMLGACKMHKNFDLGVEVAEHL-LSVEPENPGHYVMLSNI 420
           Y+    V  E P     +W AML AC  H +    +E+ + + LS    N   ++ + N 
Sbjct: 272 YQ----VFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNA 327

Query: 421 YALAGRMDRVEVVRNIM 437
            + AG +D  +   ++M
Sbjct: 328 CSHAGLVDEGKYYFDLM 344



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 139/263 (52%), Gaps = 1/263 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           + VH   +  GY     + + L+ +    G I YA+++F  +P  +   ++ ++   ++ 
Sbjct: 136 KSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQM 195

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
             + ++L  ++  +  N++ ++Y+FS VI  CA+ ++L LGR +      S +DS   V 
Sbjct: 196 GENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVG 255

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ++LV+ Y+K  +++ A +VFD +P +++  WN+M+    Q+   ++ I LF  M+  G+ 
Sbjct: 256 SSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMK 315

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T + VL AC+  G +D G++  + +    ++       SL++M  R G + +A EI
Sbjct: 316 PNFITFLNVLNACSHAGLVDEGKYYFDLMKESRIEPTDKHYASLVDMLGRAGKLEEALEI 375

Query: 265 F-DMMSELNVIAWTAMISGYGMH 286
             +M  +     W A+++   +H
Sbjct: 376 VTNMPIDPTESVWGALLTSCTIH 398


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/604 (33%), Positives = 345/604 (57%), Gaps = 41/604 (6%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQ 60
           +P+     ++L A   L+ L   +++HA +++       S +   L+ + C+       +
Sbjct: 284 RPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGR 343

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISPSNYTFSAVIKSCAHL 119
            +F  +      ++N +I    +  F  +++  +  M+    +SP++ T S+V+ +C   
Sbjct: 344 LVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRC 403

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
                   +H  V   G++ D +VQ AL++ Y++   +++AR +F  M  K +V+WN+MI
Sbjct: 404 ESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMI 463

Query: 180 SGYEQNGFAKEAIGLFNLM------------------RDFGVNPDSTTCVCVLAACAQLG 221
           +GY   G   +A+ L + M                  ++F + P+S T + VL  CA L 
Sbjct: 464 TGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALA 523

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
            +  G+ +H + V Q L  +V + ++L++MYA+CG ++ +R +F+ MS  NVI W  +I 
Sbjct: 524 ALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIM 583

Query: 282 GYGMHGYGTEAVELFHRMRAHG-----VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
            YGMHG G EA++LF RM   G     +RPN VT++A+ ++ +H+G+V EG  +F +M+ 
Sbjct: 584 AYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKA 643

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
           ++G+ P  +H+ C+VDL GR+G + EAY  +K +         W+++LGACK+H+N ++G
Sbjct: 644 KHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIG 703

Query: 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQK 456
              A++L  ++P    + +      ++ GR          M +KG++K  G S +E   +
Sbjct: 704 EIAAKNLFVLDP----NVLDYGTKQSMLGRK---------MKEKGVRKEPGCSWIEHGDE 750

Query: 457 NYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKL 516
            + F  GD SHP + E+++YL+ L  R ++ GYVP++   +H + EEE+E  L  HSE+L
Sbjct: 751 VHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSERL 810

Query: 517 ALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSC 576
           A+AFGL+ TSPG TIR+ KNLR+C DCH A KFIS   +REII+RD  RFHHF+ G+CSC
Sbjct: 811 AIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCSC 870

Query: 577 LDYW 580
            DYW
Sbjct: 871 GDYW 874



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 171/321 (53%), Gaps = 11/321 (3%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P + A+ A+LKA   ++ L   +Q+HAH+   G     ++   L+++    G I  A+R+
Sbjct: 83  PDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRV 142

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLL--FYRRMIVSNISPSNYTFSAVIKSCAHL- 119
           F  I + D   +N++I  N+   F    L    +R M++ N+ P+++T  +V  +C++L 
Sbjct: 143 FDEITNRDDVSWNSMI--NAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLI 200

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
           + L LG+ VH  V  +G D       ALV  YAK   V  A+ +FD   DK +V+WN++I
Sbjct: 201 NGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTII 259

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV-GQGL 238
           S   QN   +EA+   ++M   GV P+  T   VL AC+ L  +  G+ +H F++    L
Sbjct: 260 SSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDL 319

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
             N  +  +L++MY  C    K R +FD M    +  W AMI+GY  + +  EA+ELF  
Sbjct: 320 IENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVE 379

Query: 299 MRAH-GVRPNNVTFVAVLSAC 318
           M    G+ PN+VT  +VL AC
Sbjct: 380 MVFELGLSPNSVTLSSVLPAC 400



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/294 (33%), Positives = 153/294 (52%), Gaps = 4/294 (1%)

Query: 94  YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153
           Y  M+ + + P N+ F AV+K+ A +  LNLG+ +H HVF  G      V  +LVN Y K
Sbjct: 73  YTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGK 132

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213
             ++D AR+VFD + ++  V+WNSMI+   +    + A+ LF LM    V P S T V V
Sbjct: 133 CGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSV 192

Query: 214 LAACAQL-GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272
             AC+ L   + LG+ VH F++  G D       +L+ MYA+ G V +A+ +FD+  + +
Sbjct: 193 AHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKD 251

Query: 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
           +++W  +IS    +    EA+   H M   GVRPN VT  +VL AC+H  ++  G  + A
Sbjct: 252 LVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHA 311

Query: 333 SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
            +     L+        +VD++       E  + V D +  +   AVW AM+  
Sbjct: 312 FVLMNNDLIENSFVGCALVDMYCNCK-QPEKGRLVFDGMFRRTI-AVWNAMIAG 363



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 194/394 (49%), Gaps = 40/394 (10%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVHA ++  G  R+ +    L+++    G +  A+ +F      D   +NT+I   S+ 
Sbjct: 207 KQVHAFVLRNGDWRTFTN-NALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQN 265

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDL--- 141
           +   ++LL+   M+ S + P+  T ++V+ +C+HL +L  G+ +H  V +   ++DL   
Sbjct: 266 DRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLM---NNDLIEN 322

Query: 142 -HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF-NLMR 199
             V  ALV+ Y      +  R VFD M  +++  WN+MI+GY +N F  EAI LF  ++ 
Sbjct: 323 SFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVF 382

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
           + G++P+S T   VL AC +         +H  +V  G + +  +  +L++MY+R G + 
Sbjct: 383 ELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIE 442

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM------------------RA 301
            AR IF  M+  ++++W  MI+GY + G   +A+ L H M                  + 
Sbjct: 443 IARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKN 502

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
             ++PN+VT + VL  CA    + +G  + A   ++  L   V     +VD++ + G LN
Sbjct: 503 FPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQM-LSKDVAVGSALVDMYAKCGCLN 561

Query: 362 EAYKF-----VKDVIGEKPAPAVWTAMLGACKMH 390
            +        V++VI        W  ++ A  MH
Sbjct: 562 LSRTVFEQMSVRNVI-------TWNVLIMAYGMH 588



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 5/156 (3%)

Query: 166 RMPDKSVVAWNSMISGYEQNGFA-KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           R+P +    W S +    Q+     +AI  +  M   GV PD+     VL A A + D++
Sbjct: 47  RLPSE----WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLN 102

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
           LG+ +H  +   G  +   +  SL+NMY +CG++  AR +FD ++  + ++W +MI+   
Sbjct: 103 LGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAAC 162

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
                  AV LF  M    V P + T V+V  AC++
Sbjct: 163 RFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSN 198


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/565 (39%), Positives = 317/565 (56%), Gaps = 48/565 (8%)

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLF-------YRRMIVSNISPSNYTFS 110
           YA  +F  +  PD FL   L+    +  F T   L         RR   + +    + FS
Sbjct: 90  YALNVFSAVSPPDPFLAAALL----RFAFLTQPPLLPFRVFSHLRRAHGAELPFLPFAFS 145

Query: 111 AVIKSC-AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM-- 167
            + KS  A  S+     A    V V G+D    V+ +L+  Y    +V  ARKVFD M  
Sbjct: 146 TLAKSATASRSLPAAAAAHAVSVLVGGFDRHRFVENSLIGAYVACGDVGAARKVFDEMVE 205

Query: 168 -----------------------------PDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
                                        P K +VAW +M++GY QN    +A+ +F+ M
Sbjct: 206 KDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRM 265

Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
            + G+  D  +    ++ACAQLG +    WV E     G   NVV+ + L++MYA+CG +
Sbjct: 266 AELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLI 325

Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM--RAHGVRPNNVTFVAVLS 316
            +A ++F  M E NV  +++MI+G   HG  +EA+ LF  M  RA+ V PN+VTF+ VL+
Sbjct: 326 DEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRAN-VEPNHVTFIGVLT 384

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           AC+HAG+V EG   FA M+ +YG++P  +H+ CMVDL GRAGL++EA   V+  +   P 
Sbjct: 385 ACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRS-MSVTPH 443

Query: 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436
             VW A+LGAC++H   ++   VAEHL  +EPE+ G+YV+LSNI A AG+ + V  VR +
Sbjct: 444 GGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILASAGKWEEVSKVRIL 503

Query: 437 MIQKGLKKHVGYSTVE-VDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESES 495
           M ++ LKK    S  E  D   + F  GD +HP T+EI + L EL+ + +  GYVP   S
Sbjct: 504 MRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKALLELVAKLKLEGYVPILSS 563

Query: 496 AMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
            ++++ +EE+E  L  HSEKLAL+FGL+    G TIRI+KNLR+C DCH  ++ +S   +
Sbjct: 564 IVYDVNDEEKERLLMGHSEKLALSFGLLTLGSGCTIRIIKNLRICDDCHLFMQLVSRVES 623

Query: 556 REIIVRDRLRFHHFKRGSCSCLDYW 580
            EIIVRD +RFHHFK G CSC  +W
Sbjct: 624 VEIIVRDNMRFHHFKNGECSCGGFW 648



 Score = 45.8 bits (107), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 46/236 (19%), Positives = 98/236 (41%), Gaps = 46/236 (19%)

Query: 35  GYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFY 94
           G+G +  + + L+ +    G I  A ++F+ +   + + ++++I   +    +++++  +
Sbjct: 304 GFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALF 363

Query: 95  RRMI-VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153
           + M+  +N+ P++ TF  V+ +C+H  ++  GR                       +Y  
Sbjct: 364 KEMVNRANVEPNHVTFIGVLTACSHAGMVGEGR-----------------------YY-- 398

Query: 154 SNNVDVARKVFDRMPDK-----SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
                     F +M DK     S   +  M+    + G   EA+   +L+R   V P   
Sbjct: 399 ----------FAQMKDKYGIMPSADHYACMVDLLGRAGLVDEAL---DLVRSMSVTPHGG 445

Query: 209 TCVCVLAACAQLGDIDLGRWV--HEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
               +L AC   G  ++ + V  H F +      N VL ++++    +   VSK R
Sbjct: 446 VWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILASAGKWEEVSKVR 501


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/583 (36%), Positives = 330/583 (56%), Gaps = 9/583 (1%)

Query: 3   NKQPHSPAYEAILKAGPRL---KPLQQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITY 58
           N  P      ++ KA   L   K  Q+ H   ++ G   S   + + L+ +    G    
Sbjct: 142 NVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTRE 201

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+ +   +   D  L   LI+  S+    T+++  ++ M+V  + P+ YT+++V+ SC +
Sbjct: 202 AKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGN 261

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L  +  G+ +H  +  SG++S L  Q +L+  Y + + VD +  VF  +   + V W S+
Sbjct: 262 LKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSL 321

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           ISG  QNG  + A+  F  M    V P+S T    L  C+ L   + GR VH  +   G 
Sbjct: 322 ISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGF 381

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           D +    + LI +Y +CG    AR +FD +SE++VI+   MI  Y  +G+G EA+ELF R
Sbjct: 382 DRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFER 441

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M   G++PN+VT ++VL AC ++GLV+EG  +F S R++  +L   +H+ CMVD+ GRAG
Sbjct: 442 MINLGLQPNDVTVLSVLLACNNSGLVEEGCELFDSFRKDKIMLTN-DHYACMVDMLGRAG 500

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
            L EA   + +V    P   +W  +L ACK+H+  ++   +   +L + P + G  ++LS
Sbjct: 501 RLEEAEMLITEVTN--PDLVLWRTLLSACKVHRKVEMAERITRKILEIAPGDEGTLILLS 558

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK-SHPNTNEIYQYL 477
           N+YA  G+  RV  +++ M +  LKK+   S VE+D++ + F  GD  SHPN+ +I + L
Sbjct: 559 NLYASTGKWKRVIEMKSKMKEMKLKKNPAMSWVEIDKETHTFMAGDLFSHPNSEQILENL 618

Query: 478 DELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNL 537
           +EL+ + ++ GYV +      ++EE  +E SL  HSEKLA+AF + R   G +IRI+KNL
Sbjct: 619 EELIKKAKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNVGG-SIRILKNL 677

Query: 538 RMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R+CVDCHS IK +S    REII RD  RFHHF+ GSCSC DYW
Sbjct: 678 RVCVDCHSWIKIVSRIIKREIICRDSKRFHHFRDGSCSCGDYW 720



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 176/351 (50%), Gaps = 4/351 (1%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           ++ + A ++ +G+    S  +KL+      G I YA+++F  +P      +N++I    K
Sbjct: 66  IKNIQAQMLKSGFPVELSG-SKLVDASLKCGEIGYARQLFDGMPERHIVTWNSIIAYYIK 124

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLH 142
              S +++  YR MI +N+ P  YT S+V K+ + LS+    +  H    + G + S++ 
Sbjct: 125 HRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVF 184

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           V +ALV+ Y K      A+ V DR+ +K VV   ++I GY Q G   EA+  F  M    
Sbjct: 185 VGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEK 244

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           V P+  T   VL +C  L DI  G+ +H  +V  G +  +   TSL+ MY RC  V  + 
Sbjct: 245 VQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSL 304

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
            +F  +   N + WT++ISG   +G    A+  F +M    V+PN+ T  + L  C++  
Sbjct: 305 LVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLA 364

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           + +EG +V   +  +YG          +++L+G+ G  + A + V D + E
Sbjct: 365 MFEEGRQVHG-IVSKYGFDRDKYAGSGLIELYGKCGCSDMA-RLVFDTLSE 413



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 144/283 (50%), Gaps = 5/283 (1%)

Query: 105 SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           + +TFS +++ C     ++  + +   +  SG+  +L   + LV+   K   +  AR++F
Sbjct: 46  TTHTFSQLLRQCIDERSISGIKNIQAQMLKSGFPVELS-GSKLVDASLKCGEIGYARQLF 104

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           D MP++ +V WNS+I+ Y ++  +KEA+ ++ LM    V PD  T   V  A + L    
Sbjct: 105 DGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLEK 164

Query: 225 LGRWVHEFIVGQGLDV-NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
             +  H   V  GL+V NV + ++L++MY + G   +A+ + D + E +V+  TA+I GY
Sbjct: 165 EAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGY 224

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG 343
              G  TEAV+ F  M    V+PN  T+ +VL +C +   +  G  +   M +  G    
Sbjct: 225 SQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKS-GFESA 283

Query: 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           +     ++ ++ R  L++++    K +  + P    WT+++  
Sbjct: 284 LASQTSLLTMYLRCSLVDDSLLVFKCI--KYPNQVTWTSLISG 324



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 99/213 (46%), Gaps = 15/213 (7%)

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
            + L++   +CG +  AR++FD M E +++ W ++I+ Y  H    EAVE++  M ++ V
Sbjct: 84  GSKLVDASLKCGEIGYARQLFDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNV 143

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH-----VCMVDLFGRAGL 359
            P+  T  +V  A +   L +E  R          ++ G+E         +VD++ + G 
Sbjct: 144 LPDEYTLSSVFKAFSDLSLEKEAQRSHG-----LAVILGLEVSNVFVGSALVDMYVKFGK 198

Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
             EA K V D + EK    +   ++G  +  ++ +  V+  + +L VE   P  Y   S 
Sbjct: 199 TREA-KLVLDRVEEKDVVLITALIVGYSQKGEDTE-AVKAFQSML-VEKVQPNEYTYASV 255

Query: 420 IYALAGRMD--RVEVVRNIMIQKGLKKHVGYST 450
           + +     D    +++  +M++ G +  +   T
Sbjct: 256 LISCGNLKDIGNGKLIHGLMVKSGFESALASQT 288


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/614 (34%), Positives = 337/614 (54%), Gaps = 39/614 (6%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P      ++ KA   L+ +   ++VH   I  G+     +   L+ +         A+ 
Sbjct: 75  EPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARL 134

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  D   + ++           ++L  +R+M ++   P++ T S+++ +C  L  
Sbjct: 135 VFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKD 194

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  GR VH  V  +G   ++ V +ALVN YA   ++  A+ VFD M  +  V+WN +I+ 
Sbjct: 195 LKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITA 254

Query: 182 Y-----------------------------------EQNGFAKEAIGLFNLMRDFGVNPD 206
           Y                                    QNG  ++A+ + + M++ G  P+
Sbjct: 255 YFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPN 314

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
             T   VL AC  L  +  G+ +H +I       ++   T+L+ MYA+CG++  +R +F 
Sbjct: 315 QITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFS 374

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
           MM++ + ++W  MI    MHG G EA+ LF  M   GVRPN+VTF  VLS C+H+ LV E
Sbjct: 375 MMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDE 434

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G  +F SM +++ + P  +HH CMVD+  RAG L EAY+F+K +  E P    W A+LG 
Sbjct: 435 GLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIE-PTAGAWGALLGG 493

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C+++KN +LG   A  L  +E +NPG+YV+LSNI   A         R +M  +G+ K+ 
Sbjct: 494 CRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNP 553

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
           G S ++V  + + F +GDKS+  ++EIY++LD +  + R AGY+P ++  + ++++EE+E
Sbjct: 554 GCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKE 613

Query: 507 YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
             L  HSEKLA+AFG++  +   +IR+ KNLR+C DCH+AIKF++     +IIVRD LRF
Sbjct: 614 EVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRF 673

Query: 567 HHFKRGSCSCLDYW 580
           HHF+ G CSC D+W
Sbjct: 674 HHFRDGLCSCQDFW 687



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 156/299 (52%), Gaps = 2/299 (0%)

Query: 45  KLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN-IS 103
           K + +  ++G +  A+ +F  IP PD   +  LI   +K   S +++ +Y      N + 
Sbjct: 16  KFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVE 75

Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
           P      +V K+CA L  +   + VH      G+ SD+ +  AL++ Y K    + AR V
Sbjct: 76  PDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLV 135

Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
           F+ MP + V++W SM S Y   G  +EA+G F  M   G  P+S T   +L AC  L D+
Sbjct: 136 FEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDL 195

Query: 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGY 283
             GR VH F+V  G+  NV ++++L+NMYA C ++ +A+ +FD MS  + ++W  +I+ Y
Sbjct: 196 KSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAY 255

Query: 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342
            ++    + + +F RM + GV  N  ++ AV+  C   G  ++   V + M Q  G  P
Sbjct: 256 FLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRM-QNSGFKP 313



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 133/265 (50%), Gaps = 4/265 (1%)

Query: 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201
           H+    +  Y+ S ++  AR +FD++P   +  W  +IS   ++G + EAI  +N  R  
Sbjct: 12  HLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHK 71

Query: 202 G-VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
             V PD    + V  ACA L D+   + VHE  +  G   +V+L  +LI+MY +C     
Sbjct: 72  NCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEG 131

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           AR +F+ M   +VI+WT+M S Y   G   EA+  F +M  +G RPN+VT  ++L AC  
Sbjct: 132 ARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTD 191

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
              ++ G  V   + +  G+   V     +V+++     + +A + V D +  +   + W
Sbjct: 192 LKDLKSGREVHGFVVRN-GMGGNVFVSSALVNMYASCLSIRQA-QLVFDSMSRRDTVS-W 248

Query: 381 TAMLGACKMHKNFDLGVEVAEHLLS 405
             ++ A  ++K  + G+ V   ++S
Sbjct: 249 NVLITAYFLNKECEKGLSVFGRMMS 273



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 144/322 (44%), Gaps = 40/322 (12%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           +  ++P+S    +IL A   LK L+   +VH  ++  G G +  + + L+++      I 
Sbjct: 172 LNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIR 231

Query: 58  YAQRIFFCIPSPDSFLFNTLI----------------------------------IRNSK 83
            AQ +F  +   D+  +N LI                                  I    
Sbjct: 232 QAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCM 291

Query: 84  ANFSTDSLL-FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH 142
            N  T+  L    RM  S   P+  T ++V+ +C +L  L  G+ +H ++F   +  DL 
Sbjct: 292 QNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLT 351

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
              ALV  YAK  +++++R+VF  M  +  V+WN+MI     +G  +EA+ LF  M D G
Sbjct: 352 TTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSG 411

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV-GQGLDVNVVLATSLINMYARCGNVSKA 261
           V P+S T   VL+ C+    +D G  + + +     ++ +    + ++++ +R G + +A
Sbjct: 412 VRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEA 471

Query: 262 REIFDMMS-ELNVIAWTAMISG 282
            E    M  E    AW A++ G
Sbjct: 472 YEFIKKMPIEPTAGAWGALLGG 493


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 335/555 (60%), Gaps = 2/555 (0%)

Query: 27   VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
            +H  ++V+G   ++ +   L+S+    G ++ ++R+   +P  D   +N LI   ++   
Sbjct: 485  LHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENED 544

Query: 87   STDSLLFYRRMIVSNISPSNYTFSAVIKSC-AHLSILNLGRAVHCHVFVSGYDSDLHVQA 145
               +L  ++ + V  +S +  T  +V+ +C     +L  G+ +H ++  +G++SD HV+ 
Sbjct: 545  PDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKN 604

Query: 146  ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205
            +L+  YAK  ++  ++ +F+ + ++S++ WN++++    +G  +E + L + MR FG++ 
Sbjct: 605  SLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSL 664

Query: 206  DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
            D  +    L+A A+L  ++ G+ +H   V  G +++  +  +  +MY++CG + +  ++ 
Sbjct: 665  DQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKML 724

Query: 266  DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325
                  ++ +W  +IS  G HGY  E  E FH M   G++P +VTFV++L+AC+H GLV 
Sbjct: 725  PPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVD 784

Query: 326  EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385
            +G   +  + +++GL P +EH +C++DL GR+G L EA  F+   +  KP   VW ++L 
Sbjct: 785  QGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISK-MPMKPNDLVWRSLLA 843

Query: 386  ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKH 445
            +CK+H++ D G + AE+L  +EPE+   +V+ SN++A  GR + VE VR  M  K +KK 
Sbjct: 844  SCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKKK 903

Query: 446  VGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER 505
               S V++  K   F +GD++HP T EIY  L+++    +E+GYV ++  A+ + +EE++
Sbjct: 904  QACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQK 963

Query: 506  EYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLR 565
            E++L  HSE+LALA+ LM T  G T+RI KNLR+C DCHS  KF+S    R I++RD+ R
Sbjct: 964  EHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYR 1023

Query: 566  FHHFKRGSCSCLDYW 580
            FHHF+ G CSC DYW
Sbjct: 1024 FHHFESGLCSCKDYW 1038



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 119/476 (25%), Positives = 230/476 (48%), Gaps = 32/476 (6%)

Query: 16  KAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFN 75
           ++G   +   QVH  +  +G      + T +L L    G ++ ++++F  +P  +   + 
Sbjct: 171 RSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWT 230

Query: 76  TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135
           +L++  S      + +  Y+ M    +  +  + S VI SC  L   +LGR +   V  S
Sbjct: 231 SLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKS 290

Query: 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
           G +S L V+ +L++ +    NVD A  +F+++ ++  ++WNS+++ Y QNG  +E+  +F
Sbjct: 291 GLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIF 350

Query: 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW---VHEFIVGQGLDVNVVLATSLINMY 252
           NLMR F    +STT   +L+    LGD+D  +W   +H  +V  G D  V +  +L+ MY
Sbjct: 351 NLMRRFHDEVNSTTVSTLLSV---LGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMY 407

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
           A  G   +A  +F  M   ++I+W ++++ +   G   +A+ +   M   G   N VTF 
Sbjct: 408 AGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFT 467

Query: 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372
           + L+AC       +G R+   +    GL         +V ++G+ G ++ + +    V+ 
Sbjct: 468 SALAACFSPEFFDKG-RILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRR----VLL 522

Query: 373 EKPAPAV--WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
           + P   V  W A++G    +++ D  +  A   L VE  +  +  ++S + A        
Sbjct: 523 QMPRRDVVAWNALIGGYAENEDPDKAL-AAFQTLRVEGVSANYITVVSVLSAC------- 574

Query: 431 EVVRNIMIQKG--LKKHVGYSTVEVDQ--KNYLFSM----GDKSHPNTNEIYQYLD 478
            +V   ++++G  L  ++  +  E D+  KN L +M    GD S  ++ +++  LD
Sbjct: 575 -LVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLS--SSQDLFNGLD 627



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 147/272 (54%), Gaps = 1/272 (0%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           L+++    G +  A+ +F  +P  +   +NT++    +     + + F+++M    I PS
Sbjct: 99  LINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPS 158

Query: 106 NYTFSAVIKSCAHL-SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164
           ++  ++++ +C    S+   G  VH  V  SG  SD++V  A+++ Y     V  +RKVF
Sbjct: 159 SFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVF 218

Query: 165 DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224
           + MPD++VV+W S++ GY   G  +E I ++  MR  GV  +  +   V+++C  L D  
Sbjct: 219 EEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDES 278

Query: 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284
           LGR +   ++  GL+  + +  SLI+M+   GNV  A  IF+ +SE + I+W ++++ Y 
Sbjct: 279 LGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYA 338

Query: 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
            +G+  E+  +F+ MR      N+ T   +LS
Sbjct: 339 QNGHIEESSRIFNLMRRFHDEVNSTTVSTLLS 370



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 179/371 (48%), Gaps = 12/371 (3%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+   +I +G     ++   L+S+  + G + YA  IF  I   D+  +N+++   ++ 
Sbjct: 281 RQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQN 340

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               +S   +  M   +   ++ T S ++     +     GR +H  V   G+DS + V 
Sbjct: 341 GHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVC 400

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             L+  YA +   + A  VF +MP K +++WNS+++ +  +G + +A+G+   M   G +
Sbjct: 401 NTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKS 460

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
            +  T    LAAC      D GR +H  +V  GL  N ++  +L++MY + G +S +R +
Sbjct: 461 VNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRV 520

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG-L 323
              M   +V+AW A+I GY  +    +A+  F  +R  GV  N +T V+VLSAC   G L
Sbjct: 521 LLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDL 580

Query: 324 VQEGHRVFASMRQEYGLLPGVE--HHV--CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           ++ G  + A     Y +  G E   HV   ++ ++ + G L+ +      +  +  +   
Sbjct: 581 LERGKPLHA-----YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL--DNRSIIT 633

Query: 380 WTAMLGACKMH 390
           W A+L A   H
Sbjct: 634 WNAILAANAHH 644



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 145/268 (54%), Gaps = 14/268 (5%)

Query: 125 GRAVHCHVFVSGYD--SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
           GRA+H  + V G    S LH    L+N Y K   V  AR +FD+MP ++ V+WN+M+SG 
Sbjct: 77  GRALHA-LCVKGLVRLSVLHTNT-LINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGI 134

Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI-DLGRWVHEFIVGQGLDVN 241
            + G   E +  F  M D G+ P S     ++ AC + G +   G  VH F+   GL  +
Sbjct: 135 VRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSD 194

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V ++T+++++Y   G VS +R++F+ M + NV++WT+++ GY   G   E ++++  MR 
Sbjct: 195 VYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRG 254

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQE---GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
            GV  N  +   V+S+C   GL+++   G ++   + +  GL   +     ++ +FG  G
Sbjct: 255 EGVECNENSMSLVISSC---GLLKDESLGRQIIGQVIKS-GLESKLAVENSLISMFGNMG 310

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
            ++ A  ++ + I E+   + W +++ A
Sbjct: 311 NVDYA-NYIFNQISERDTIS-WNSIVAA 336



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 131/276 (47%), Gaps = 2/276 (0%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSF 72
           A L  G  L+  + +HA+++ AG+     +   L+++    G ++ +Q +F  + +    
Sbjct: 573 ACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSII 632

Query: 73  LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHV 132
            +N ++  N+      + L    +M    +S   ++FS  + + A L++L  G+ +H   
Sbjct: 633 TWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLA 692

Query: 133 FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAI 192
              G++ D  +  A  + Y+K   +    K+     ++S+ +WN +IS   ++G+ +E  
Sbjct: 693 VKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVC 752

Query: 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINM 251
             F+ M + G+ P   T V +L AC+  G +D G   ++ I    GL+  +     +I++
Sbjct: 753 ETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDL 812

Query: 252 YARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMH 286
             R G +++A      M  + N + W ++++   +H
Sbjct: 813 LGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIH 848


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/493 (40%), Positives = 296/493 (60%), Gaps = 32/493 (6%)

Query: 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK-------- 162
           + + +CA+L ++N+G+ +H      G +S +++Q AL+  Y+K  ++ VARK        
Sbjct: 381 SALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLL 440

Query: 163 -----------------------VFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
                                  +FD MP+K VV+W+SMISGY QN    E + LF  M+
Sbjct: 441 DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ 500

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G  PD TT V V++ACA+L  ++ G+WVH +I   GL +NV+L T+LI+MY +CG V 
Sbjct: 501 MSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVE 560

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
            A E+F  M E  +  W A+I G  M+G    ++++F  M+   V PN +TF+ VL AC 
Sbjct: 561 TALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACR 620

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H GLV EG   F SM  ++ + P V+H+ CMVDL GRAG L EA + + + +   P  A 
Sbjct: 621 HMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELL-NRMPMTPDVAT 679

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           W A+LGACK H + ++G  V   L+ ++P++ G +V+LSNIYA  G+ D V  +R +M +
Sbjct: 680 WGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTK 739

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
             + K  G S +E +   + F  GDK+HP+ + I   L E+  + +  GY P+    + +
Sbjct: 740 HRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLD 799

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           ++EEE+E +L  HSEKLA+AFGL+  SP   IRI+KNLR+C DCH+A K IS A  R+I+
Sbjct: 800 VDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIV 859

Query: 560 VRDRLRFHHFKRG 572
           VRDR RFHHF++G
Sbjct: 860 VRDRHRFHHFEQG 872



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 172/397 (43%), Gaps = 73/397 (18%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +QVH H++  G+     +   L++       +T A R+F      DS  +N+++    + 
Sbjct: 233 KQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEI 292

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++   Y +M   +I  SN                                      
Sbjct: 293 GNVEEAKHIYHQMPERSIIASN-------------------------------------- 314

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            +++  +     V  A K+FD M +K +V W+++I+ ++QN   +EAI  F  M   GV 
Sbjct: 315 -SMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVM 373

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE- 263
            D    V  L+ACA L  +++G+ +H   +  G +  + L  +LI MY++CG++  AR+ 
Sbjct: 374 VDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKL 433

Query: 264 ------------------------------IFDMMSELNVIAWTAMISGYGMHGYGTEAV 293
                                         IFD M E +V++W++MISGY  +    E +
Sbjct: 434 FDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETL 493

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353
            LF  M+  G +P+  T V+V+SACA    +++G  V A +++  GL   V     ++D+
Sbjct: 494 ALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRN-GLTINVILGTTLIDM 552

Query: 354 FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
           + + G +  A +    +I  +   + W A++    M+
Sbjct: 553 YMKCGCVETALEVFYGMI--EKGISTWNALILGLAMN 587



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 121/295 (41%), Gaps = 49/295 (16%)

Query: 1   MKNKQPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFIT 57
           M   +P      +++ A  RL  L+Q   VHA++   G   +  + T L+ +    G + 
Sbjct: 501 MSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVE 560

Query: 58  YAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCA 117
            A  +F+ +       +N LI+  +       SL  +  M   +++P+  TF  V+ +C 
Sbjct: 561 TALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACR 620

Query: 118 HLSILNLGRAVHCHVFVSGYDSDLHVQ--AALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
           H+ +++ G+  H +  +  +    +V+    +V+   ++  +  A ++ +RMP       
Sbjct: 621 HMGLVDEGQH-HFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMP------- 672

Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
                                      + PD  T   +L AC + GD ++GR V   ++ 
Sbjct: 673 ---------------------------MTPDVATWGALLGACKKHGDSEMGRRVGRKLIE 705

Query: 236 QGLD---VNVVLATSLINMYARCGNVSKAREIFDMMSELNV--IAWTAMISGYGM 285
              D    +V+L+    N+YA  G      EI  MM++  V  I   +MI   G+
Sbjct: 706 LQPDHDGFHVLLS----NIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGV 756


>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
          Length = 1056

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/521 (41%), Positives = 312/521 (59%), Gaps = 22/521 (4%)

Query: 74   FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
            FN+LI   ++ +        +RRM    +     T  A++ + A LS++     VH    
Sbjct: 544  FNSLISGCARHSLPVACFALFRRMRAIAVRFDAVTLLALVPA-APLSVVP---QVHALAA 599

Query: 134  VSGYDSDLHVQAALVNFYAKSN--NVDVARKVFDRMP--DKSVVAWNSMISGYEQNGFAK 189
              G  ++  V   L++ YA+       +AR+VFD MP   + +V+WN+++S + QNG A 
Sbjct: 600  QVGLATETSVANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAV 659

Query: 190  EAIGLFNLMRD---FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ--GLDVNVVL 244
            +A+ L+  MR     GV PD+ T V VL++ A LG   +G     ++V +  G   NV L
Sbjct: 660  DALDLYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDAEHYVVQRLPGFRTNVQL 719

Query: 245  ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
              +LIN +ARCG++ +A+++FD M   ++++WTA+I+G+GMHG G  AV LF RM + G+
Sbjct: 720  CNALINFHARCGSLPRAQQLFDEMPAKSIVSWTALITGHGMHGNGGVAVSLFERMVSEGI 779

Query: 305  RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
             P+NV  V VLSAC+HAGL  EG   F++M   Y L P +EH+ C+VDL GRAG L EA 
Sbjct: 780  HPDNVAMVGVLSACSHAGLYDEGRMYFSTMESVYKLRPTLEHYTCIVDLLGRAGRLEEA- 838

Query: 365  KFVKDVIGEKPAP---AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
               +++I   P P   AVW A+LGACK+HKN ++G E    ++ +EP N G+YV++SNIY
Sbjct: 839  ---RELISSMPMPADGAVWGALLGACKIHKNVEIGEEAFARVVELEPRNVGYYVLMSNIY 895

Query: 422  ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
               G++D V  VR +M ++GLKK  G S VE + + +LF   D SHP    IY+ +  L 
Sbjct: 896  TDTGQLDCVARVRAVMRKRGLKKEPGCSYVEHNGRVHLFMADDHSHPQARRIYELVTRLE 955

Query: 482  GRCREAGYVPESESAMHE--LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRM 539
               +E   V ES  A+ +  +E+E  +  + +HSEKLA+AFGL+ T  G  I ++KNLR+
Sbjct: 956  LMVKEKSGVRESVVAVPKGRMEKEAAQPLVGFHSEKLAVAFGLLNTEAGSEIVVIKNLRV 1015

Query: 540  CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            C DCHS +K +S  TNR  +VRD  RFH F  G CSC DYW
Sbjct: 1016 CGDCHSFLKAVSATTNRSFLVRDASRFHRFDGGVCSCKDYW 1056



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 172/361 (47%), Gaps = 25/361 (6%)

Query: 13  AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFI--TYAQRIFFCIP--S 68
           A++ A P L  + QVHA     G     S+   L+S     G      A+R+F  +P  S
Sbjct: 581 ALVPAAP-LSVVPQVHALAAQVGLATETSVANCLMSTYARGGAFGAALARRVFDEMPLAS 639

Query: 69  PDSFLFNTLIIRNSKANFSTDSLLFYRRMIV---SNISPSNYTFSAVIKSCAHLSILNLG 125
            D   +N ++  +++   + D+L  YRRM     S + P   T   V+ S AHL    +G
Sbjct: 640 RDLVSWNAVLSAHAQNGLAVDALDLYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVG 699

Query: 126 RAVHCHVF--VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183
                +V   + G+ +++ +  AL+NF+A+  ++  A+++FD MP KS+V+W ++I+G+ 
Sbjct: 700 FDAEHYVVQRLPGFRTNVQLCNALINFHARCGSLPRAQQLFDEMPAKSIVSWTALITGHG 759

Query: 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG-QGLDVNV 242
            +G    A+ LF  M   G++PD+   V VL+AC+  G  D GR     +     L   +
Sbjct: 760 MHGNGGVAVSLFERMVSEGIHPDNVAMVGVLSACSHAGLYDEGRMYFSTMESVYKLRPTL 819

Query: 243 VLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
              T ++++  R G + +ARE+   M    +   W A++    +H       E F R+  
Sbjct: 820 EHYTCIVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVEIGEEAFARVVE 879

Query: 302 HGVRPNNVTFVAVLSAC-AHAGLVQEGHRVFASMRQEYGLL--PG---VEH----HVCMV 351
             + P NV +  ++S      G +    RV A MR+  GL   PG   VEH    H+ M 
Sbjct: 880 --LEPRNVGYYVLMSNIYTDTGQLDCVARVRAVMRKR-GLKKEPGCSYVEHNGRVHLFMA 936

Query: 352 D 352
           D
Sbjct: 937 D 937



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 24/230 (10%)

Query: 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD--STTCVCVLAACAQLGDIDLGRW 228
           S  +W++ +    + G  KE+I L   +R  G +P   +      + +CA L        
Sbjct: 432 STESWSARVRTLTRLGRHKESIAL---LRHGGPSPPPHALALPASVISCAALSLPTGVAQ 488

Query: 229 VHEFIVGQGL--DVNVVLATSLINMYARCGNVSKAREIFDMMSELNV------IAWTAMI 280
           +H     +GL    +  L ++L+  Y+R G +  A ++ D     +        A+ ++I
Sbjct: 489 IHALAAKRGLLPAADAYLLSALLTAYSRLGCLRLAHQLLDETPIESTSHTTLRTAFNSLI 548

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           SG   H        LF RMRA  VR + VT +A++ A A   +V + H + A    + GL
Sbjct: 549 SGCARHSLPVACFALFRRMRAIAVRFDAVTLLALVPA-APLSVVPQVHALAA----QVGL 603

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA----VWTAMLGA 386
                   C++  + R G    A    + V  E P  +     W A+L A
Sbjct: 604 ATETSVANCLMSTYARGGAFGAA--LARRVFDEMPLASRDLVSWNAVLSA 651


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/556 (35%), Positives = 313/556 (56%), Gaps = 1/556 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           Q +HA +   G+    ++   L+++    G +    +++  +   D   +N  +      
Sbjct: 435 QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDC 494

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
                 L  +  M+     P+ YTF +++ SC+ L  ++ GR VH H+  +  D +  V 
Sbjct: 495 GMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC 554

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
            AL++ YAK   ++ A   F+R+  + +  W  +I+ Y Q    ++A+  F  M+  GV 
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T    L+ C+ L  ++ G+ +H  +   G   ++ + ++L++MYA+CG + +A  +
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEAL 674

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           F+ +   + IAW  +I GY  +G G +A+  F  M   G+ P+ VTF  +LSAC+H GLV
Sbjct: 675 FEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLV 734

Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           +EG   F SM +++G+ P V+H  CMVD+ GR G  +E   F++ +   + A  +W  +L
Sbjct: 735 EEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNA-LIWETVL 793

Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
           GA KMH N  LG + A  L  ++PE    Y++LSNI+A  GR D V+ VR++M  KG+KK
Sbjct: 794 GASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKK 853

Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
             G S VE + + + F   D SHP   EI+  LDEL        YVP++E  +H + E E
Sbjct: 854 EPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETE 913

Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
           ++ +LR+HSE+LAL F L+ TS    IRI KNLR+C DCH  +K IS  TN+EI+VRD  
Sbjct: 914 KKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVR 973

Query: 565 RFHHFKRGSCSCLDYW 580
           RFHHFK G+CSC D+W
Sbjct: 974 RFHHFKNGACSCNDFW 989



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 182/377 (48%), Gaps = 4/377 (1%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN 101
           +   L+++     +  YA+ +   +P  D   +  LI       F+ DS+  ++ M    
Sbjct: 149 LWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEG 208

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
           I P+ +T +  +K+C+    L+LG+ +H   F  G   DL V +ALV+ YAK   +++A 
Sbjct: 209 IMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELAS 268

Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
           K+F  MP+++ V WN +++GY Q G     + LF  M +  V  +  T   VL  CA   
Sbjct: 269 KMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSK 328

Query: 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
           ++  G+ +H  I+  G + N  +   L++MY++CG    A  +F  + + +++ W+A+I+
Sbjct: 329 NLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALIT 388

Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
                G   E+++LFH MR     PN  T  ++LSA  + G +Q G  + A + + YG  
Sbjct: 389 CLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK-YGFE 447

Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
             V     +V ++ + G +++  K  + ++        W A L        +D  + +  
Sbjct: 448 TDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLIS--WNAYLSGLHDCGMYDRPLTIFY 505

Query: 402 HLLSVEPENPGHYVMLS 418
           H+L  E   P  Y  +S
Sbjct: 506 HMLE-EGFIPNMYTFIS 521



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 177/351 (50%), Gaps = 1/351 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  Q +H+ +I  GY  +  +   L+ +    G    A  +F  I  PD  +++ LI  
Sbjct: 330 LKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITC 389

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
             +   S +S+  +  M + +  P+ YT  +++ +  +   L  G+++H  V+  G+++D
Sbjct: 390 LDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETD 449

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           + V  ALV  Y K+  V    K+++ M D+ +++WN+ +SG    G     + +F  M +
Sbjct: 450 VAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLE 509

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            G  P+  T + +L +C+ L D+  GR VH  I+   LD N  + T+LI+MYA+C  +  
Sbjct: 510 EGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLED 569

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A   F+ +S  ++  WT +I+ Y     G +A+  F +M+  GV+PN  T    LS C+ 
Sbjct: 570 ADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSS 629

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
              + EG +   SM  + G +  +     +VD++ + G + EA    + +I
Sbjct: 630 LASL-EGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALI 679



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 166/315 (52%), Gaps = 6/315 (1%)

Query: 109 FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           +S++++ CA    L + +A+H  +     + D H+  +LVN YAK      AR V  +MP
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
           D+ VV+W ++I G    GFA ++I LF  M++ G+ P+  T    L AC+    +DLG+ 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           +H      GL +++ + ++L+++YA+CG +  A ++F  M E N + W  +++GY   G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
            T  ++LF  M    V+ N  T   VL  CA++  +++G +V  S+  + G   G E   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQG-QVIHSLIIKCG-YEGNEFIG 352

Query: 349 C-MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
           C +VD++ + GL  +A    K +  +KP   VW+A++         +  +++  HL+ + 
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTI--KKPDIVVWSALITCLDQQGQSEESIKLF-HLMRLG 409

Query: 408 PENPGHYVMLSNIYA 422
              P  Y + S + A
Sbjct: 410 DTLPNQYTICSLLSA 424



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 153/308 (49%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+HA     G      + + L+ L    G I  A ++F  +P  +   +N L+   ++ 
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
              T  L  +  M+  ++  + +T + V+K CA+   L  G+ +H  +   GY+ +  + 
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
             LV+ Y+K      A  VF  +    +V W+++I+  +Q G ++E+I LF+LMR     
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
           P+  T   +L+A    G++  G+ +H  +   G + +V ++ +L+ MY + G V    ++
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKL 472

Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
           ++ M + ++I+W A +SG    G     + +F+ M   G  PN  TF+++L +C+    V
Sbjct: 473 YESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDV 532

Query: 325 QEGHRVFA 332
             G +V A
Sbjct: 533 HYGRQVHA 540


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/438 (44%), Positives = 282/438 (64%), Gaps = 13/438 (2%)

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
           ++ +  R +F ++   ++  WN+MI G   N    +AI  + LMR  G  P++ T   VL
Sbjct: 60  SDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVL 119

Query: 215 AACAQLGDIDLG---------RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265
            ACA+L D+ LG          W+H+ I+  G+  NV + TSL++MYA+CGN+ KAR +F
Sbjct: 120 KACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVF 179

Query: 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH---GVRPNNVTFVAVLSACAHAG 322
           D M E ++++W AMI GY ++G   EA++LF +M+     G++P+  TF+ +L  C HAG
Sbjct: 180 DGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAG 239

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           LV EG R F SM + + L P +EH+ CMVDL GRAGLL+EA++ ++++  E  A  VW A
Sbjct: 240 LVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANA-IVWGA 298

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LGAC++H++  L     + L+ +EP N G+YV+LSNIY+   + D    VR  M +K +
Sbjct: 299 LLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRI 358

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502
           +K  G S +EVD   + F +GDK HP + +IY  LDEL  + + AGYVP ++  + ++EE
Sbjct: 359 QKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEE 418

Query: 503 EEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRD 562
           EE+E+ L  HSEKLA+AFGL+  +P   IR+VKNLR+C DCH AIK IS  T REI VRD
Sbjct: 419 EEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRD 478

Query: 563 RLRFHHFKRGSCSCLDYW 580
             RFH F+ GSCSC DYW
Sbjct: 479 NNRFHCFREGSCSCNDYW 496



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 148/311 (47%), Gaps = 17/311 (5%)

Query: 42  MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN 101
           +L  +L    D     Y + +F  I  P+ FL+NT+I      +   D++ FY  M    
Sbjct: 48  LLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEG 107

Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS---------GYDSDLHVQAALVNFYA 152
             P+N+TF  V+K+CA L  L LG  +H  V            G   ++ V  +LV+ YA
Sbjct: 108 FLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYA 167

Query: 153 KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR---DFGVNPDSTT 209
           K  N++ AR VFD MP+K +V+W +MI GY  NG  KEAI LF  M+     G+ PD  T
Sbjct: 168 KCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNT 227

Query: 210 CVCVLAACAQLGDIDLG-RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF-DM 267
            + +L  C   G +D G R+ +       L  ++     ++++  R G + +A ++  +M
Sbjct: 228 FIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNM 287

Query: 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL-VQE 326
             E N I W A++    +H   T+  EL  +     + P N     +LS    A L   E
Sbjct: 288 PMEANAIVWGALLGACRIH-RDTQLAELALKQLIE-LEPWNSGNYVLLSNIYSANLKWDE 345

Query: 327 GHRVFASMRQE 337
             +V  SM ++
Sbjct: 346 AAKVRLSMNEK 356


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/585 (36%), Positives = 326/585 (55%), Gaps = 25/585 (4%)

Query: 6   PHSPAYEAILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P +     ++K   RL  +Q   Q+H   +  G+G    +   L+++    G I  A+++
Sbjct: 110 PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKV 169

Query: 63  FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI-----KSCA 117
           F  +   D  L+N+LI   ++      +L  +  M      P    FS  +       C 
Sbjct: 170 FDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM------PERDAFSWTVLVDGLSKCG 223

Query: 118 HL-SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWN 176
            + S   L   + C   VS          A++N Y KS + D A ++F +MP   +V WN
Sbjct: 224 KVESARKLFDQMPCRNLVS--------WNAMINGYMKSGDFDSALELFYQMPIWDLVTWN 275

Query: 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
            MI+GYE NG   +A+ +F +M   G  P   T V VL+A + L  +  GRW+H ++   
Sbjct: 276 LMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKN 335

Query: 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF 296
           G +++ +L TSLI MYA+CG +  A  +F  + +  V  WTA+I G G+HG    A+ LF
Sbjct: 336 GFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALF 395

Query: 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356
             M   G++PN + F+ VL+AC HAGLV +G + F  M  EY + P +EH+ C+VD+  R
Sbjct: 396 LEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCR 455

Query: 357 AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416
           AG L EA   +++ +   P   +W ++LG  + H   D+G   A+ ++ V PE  G Y++
Sbjct: 456 AGHLEEAKNTIEN-MPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYIL 514

Query: 417 LSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQY 476
           LSN+YA +G  ++V  VR +M ++G +K  G S+VE     + F +GD SHP T EIY  
Sbjct: 515 LSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAK 574

Query: 477 LDELMGRCREAGYVPESESAMHELE-EEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVK 535
           + E+  + +  G+VP++   +  +E E+E+E  L  HSE+LA+AFGL+   PG+ IRI+K
Sbjct: 575 MSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMK 634

Query: 536 NLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           NLR+C DCHS  K +S   +REIIVRD  RFHHFK GSCSC+DYW
Sbjct: 635 NLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 11  YEAILKAG---PRL-----KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF--ITYAQ 60
           YE +L+ G    R+     + ++Q+HA  +         + ++LL+L  D     + YA+
Sbjct: 8   YEGLLELGFADQRMGLCAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYAR 67

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
            IF  I       +NT+I    +  FS D ++ +  + V    P N+T   VIK CA L 
Sbjct: 68  SIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLG 126

Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
           ++  G+ +H      G+ SD+ VQ +LVN Y+K   +D ARKVFD M DK VV WNS+I 
Sbjct: 127 VVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLID 186

Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           GY + G    A+ LF  M +     D+ +   ++   ++ G ++  R + + +  +    
Sbjct: 187 GYARCGEIDIALQLFEEMPE----RDAFSWTVLVDGLSKCGKVESARKLFDQMPCR---- 238

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           N+V   ++IN Y + G+   A E+F  M   +++ W  MI+GY ++G   +AV++F  M 
Sbjct: 239 NLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMML 298

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G RP++ T V+VLSA +   ++ +G  + + M +    L G+     +++++ + G +
Sbjct: 299 KLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGI-LGTSLIEMYAKCGCI 357

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMH 390
             A    + +  +K     WTA++    +H
Sbjct: 358 ESALTVFRAI--QKKKVGHWTAIIVGLGIH 385


>gi|125544635|gb|EAY90774.1| hypothetical protein OsI_12377 [Oryza sativa Indica Group]
          Length = 653

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/595 (35%), Positives = 337/595 (56%), Gaps = 20/595 (3%)

Query: 5   QPHSPAYEAILKAG-----PRLKPLQ-----QVHAHLIVAGY--GRSRSML-TKLLSLVC 51
            P   A+ A+LKA      P  +P       Q+HA  +V G+  G   ++L T +LS   
Sbjct: 60  DPTPRAFSALLKAASSSASPPRRPSSLGLGAQLHAQAVVRGFLGGDDSTILATAVLSFYA 119

Query: 52  DAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV--SNISPSNYTF 109
                  A+++F  +P  ++  +N LI   ++A    +++L +R M    S+++P  YTF
Sbjct: 120 SCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTF 179

Query: 110 SAVIKSCAHLS----ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            A++            L LG A+H HV  +G + D  V A+LV+ YA    ++ A+  FD
Sbjct: 180 PALLSGIGREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFD 239

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           ++     + W+SMIS Y      + A+ +F  M    + P       V + C ++G +++
Sbjct: 240 QVGSSDPIVWSSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEM 299

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ VH   +    + +  +  +L+ MY+ CG ++ A+++F     +NVI++ +MIS  G 
Sbjct: 300 GKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQ 359

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           HGY  EA+E F +M+  G+ P+ VT + ++S+  HAGLV EG ++F SM    G+ P  +
Sbjct: 360 HGYPKEALEHFRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQ 419

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ C+VD+  R+G + +A K + ++  E  AP +W  +LGAC  H++ + G  +AE L  
Sbjct: 420 HYACVVDMLARSGEIGKAMKTINEMPFEAEAP-LWRIVLGACSKHRDIETGKRIAEMLFE 478

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           +EP    +Y++L NIYA  GR    E VR++M ++G+ K   +S +E+ Q+ Y F + D+
Sbjct: 479 MEPYEATNYILLGNIYARLGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDR 538

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
           SHP + EIY+ LD L+   + AGYVP+   A H ++ + +E SL YH EKLA AFG +  
Sbjct: 539 SHPISREIYRNLDRLISTIKVAGYVPDISFAAHNIQRDRKEESLYYHCEKLAFAFGDLAA 598

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             G T+RI+KNLR+C DCH A K+ S+ T REII+RD  RFHHF  G CSC DYW
Sbjct: 599 PSGGTLRIMKNLRVCGDCHCAYKYFSLVTGREIILRDNQRFHHFNSGFCSCGDYW 653


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/603 (37%), Positives = 328/603 (54%), Gaps = 48/603 (7%)

Query: 25   QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
            + VHA ++  G      +   +L L        YA+R+F  +   D   +N +I    +A
Sbjct: 410  KGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRA 469

Query: 85   NFSTDSLLFYRRM----------IVSNISPSNY---------------------TFSAVI 113
                 SL  +RR+          IV  +    Y                     TFS  +
Sbjct: 470  GDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTFSIAL 529

Query: 114  KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP----- 168
               + LS++ LGR +H  V   G+  D  ++++LV  Y K   +D A  V   +P     
Sbjct: 530  ILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVPLDFLK 589

Query: 169  -----------DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
                          +V+W  M+SGY  NG  ++ +  F LM    V  D  T   +++AC
Sbjct: 590  NGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISAC 649

Query: 218  AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
            A  G ++ GR VH +    G  ++  + +SLI+MY++ G++  A  IF   +E N++ WT
Sbjct: 650  ANAGILEFGRHVHAYNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWT 709

Query: 278  AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
            +MISG  +HG G +A+ LF  M   G+ PN VTF+ VL+AC HAGL++EG R F  M+  
Sbjct: 710  SMISGCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMKDA 769

Query: 338  YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
            Y + PGVEH   MVDL+GRAG L E   F+ +  G     +VW + L +C++HKN ++G 
Sbjct: 770  YCINPGVEHCTSMVDLYGRAGHLTETKNFIFEN-GISHLTSVWKSFLSSCRLHKNVEMGK 828

Query: 398  EVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKN 457
             V+E LL V P +PG YV+LSN+ A   R D    VR++M Q+G+KK  G S +++  + 
Sbjct: 829  WVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGIKKQPGQSWIQLKDQI 888

Query: 458  YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLA 517
            + F MGD+SHP   EIY YLD L+GR +E GY  + +  M ++EEE+ E  + +HSEKLA
Sbjct: 889  HTFIMGDRSHPQDEEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLA 948

Query: 518  LAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCL 577
            + FG++ T+    IRI+KNLR+C DCH+ IK+ S   +REII+RD  RFHHFK G CSC 
Sbjct: 949  VVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIILRDIHRFHHFKHGGCSCG 1008

Query: 578  DYW 580
            DYW
Sbjct: 1009 DYW 1011



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/442 (23%), Positives = 199/442 (45%), Gaps = 52/442 (11%)

Query: 11  YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
           + + +  GP   PL  +HA  +  G  ++ +    LL+L   +  + +A+++F  IP  +
Sbjct: 297 FHSTISNGP--PPLGTLHALSVKNGSLQTLNSANYLLTLYVKSSNMDHARKLFDEIPQRN 354

Query: 71  SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
           +  +  LI   S+A  S      +R M      P+ YT S++ K C+    L LG+ VH 
Sbjct: 355 TQTWTILISGFSRAGSSEVVFKLFREMRAKGACPNQYTLSSLFKCCSLDINLQLGKGVHA 414

Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
            +  +G D+D+ +  ++++ Y K    + A +VF+ M +  VV+WN MIS Y + G  ++
Sbjct: 415 WMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRAGDVEK 474

Query: 191 AIGLF-----------NLMRD----FGVNPDSTTCVCVLAACAQ---------------- 219
           ++ +F           N + D    FG    +   +  +  C                  
Sbjct: 475 SLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTFSIALILSSS 534

Query: 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI-----FDMMSELN-- 272
           L  ++LGR +H  ++  G   +  + +SL+ MY +CG +  A  +      D +   N  
Sbjct: 535 LSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAG 594

Query: 273 ---------VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323
                    +++W  M+SGY  +G   + ++ F  M    V  +  T   ++SACA+AG+
Sbjct: 595 VTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGI 654

Query: 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383
           ++ G  V A    + G          ++D++ ++G L++A+   +     +P    WT+M
Sbjct: 655 LEFGRHVHA-YNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQT--NEPNIVFWTSM 711

Query: 384 LGACKMHKNFDLGVEVAEHLLS 405
           +  C +H      + + E +L+
Sbjct: 712 ISGCALHGQGKQAICLFEEMLN 733



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 114/204 (55%), Gaps = 8/204 (3%)

Query: 103 SPSNYTFSAV-IKSCA--HLSILN----LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155
           S S+Y +  + ++SC+  H +I N    LG  +H     +G    L+    L+  Y KS+
Sbjct: 280 SVSSYFYPPLWLQSCSLFHSTISNGPPPLG-TLHALSVKNGSLQTLNSANYLLTLYVKSS 338

Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
           N+D ARK+FD +P ++   W  +ISG+ + G ++    LF  MR  G  P+  T   +  
Sbjct: 339 NMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGACPNQYTLSSLFK 398

Query: 216 ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIA 275
            C+   ++ LG+ VH +++  G+D +VVL  S++++Y +C     A  +F++M+E +V++
Sbjct: 399 CCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVVS 458

Query: 276 WTAMISGYGMHGYGTEAVELFHRM 299
           W  MIS Y   G   +++++F R+
Sbjct: 459 WNIMISAYLRAGDVEKSLDMFRRL 482


>gi|302781198|ref|XP_002972373.1| hypothetical protein SELMODRAFT_97177 [Selaginella moellendorffii]
 gi|300159840|gb|EFJ26459.1| hypothetical protein SELMODRAFT_97177 [Selaginella moellendorffii]
          Length = 485

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/487 (41%), Positives = 294/487 (60%), Gaps = 5/487 (1%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M     +P+N+T S  I +C+ L  L+ GR +H  +   G+ +D HV+  L++FY K ++
Sbjct: 1   MNQEGTAPNNHTLSIAIAACSALVDLSRGRKIHASLEGCGFQADDHVKNTLMDFYTKCDS 60

Query: 157 VDVARKVFDRMP-DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
           +D  +KVF  M  D  VV+W  +I G  Q G  +EA   F LM   G++ D+ T   +L 
Sbjct: 61  LDDVKKVFRSMGGDAKVVSWTCLIVGCVQLGSYREAFHFFKLMELQGIHADTVTYASLLD 120

Query: 216 ACAQLGDIDLGRWVHEFIVGQGL-DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
           AC+ L  +  GR +H  I   GL + +VVL TS++ MY++CG + +AR IFD + E N++
Sbjct: 121 ACSNLASLSQGRKLHARIAELGLLEADVVLQTSILTMYSKCGRLGEARGIFDRIGEKNIV 180

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
           AW+A+I  Y  +G  + A++LF +M   G + +  TFV+VL AC+HAGLV + +  F +M
Sbjct: 181 AWSAIIIAYAQNGDCSTALKLFWKMEQAGQKASETTFVSVLYACSHAGLVDDAYYYFTTM 240

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV-WTAMLGACKMHKNF 393
           + E  L P   H+ C+VDL GRAG L +A + ++ +  + P   V WT +LGACK H + 
Sbjct: 241 KSERKLEPLPGHYGCIVDLLGRAGRLADAEELIQRM--KAPQSGVLWTTLLGACKTHGDM 298

Query: 394 DLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEV 453
            L    AE +  ++P +   YV+LSN+Y+ AGR D    VR  M    +KK  G S VEV
Sbjct: 299 KLAERAAERIRELDPGSATPYVLLSNVYSEAGRWDLAASVRKRMDDMKVKKPAGKSWVEV 358

Query: 454 DQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHS 513
             K + F  GD+SHP   EI   L  L+   +EAGY  +  + +H  EEEE+E  L YHS
Sbjct: 359 RGKLHEFVAGDQSHPKIGEIVLELKRLLALIKEAGYAADKSATLHNAEEEEKEGLLYYHS 418

Query: 514 EKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGS 573
           EKLA+  GL+ +  G  +++VKNLR+C DCH+A KFIS   +R+I++RD  +FHHF+ G 
Sbjct: 419 EKLAMVMGLLHSPRGEPVQVVKNLRVCSDCHTAAKFISKVEDRQIVLRDTKQFHHFEHGR 478

Query: 574 CSCLDYW 580
           CSC DYW
Sbjct: 479 CSCGDYW 485



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 163/373 (43%), Gaps = 44/373 (11%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFL-FNTLIIRNSK 83
           +++HA L   G+     +   L+        +   +++F  +      + +  LI+   +
Sbjct: 30  RKIHASLEGCGFQADDHVKNTLMDFYTKCDSLDDVKKVFRSMGGDAKVVSWTCLIVGCVQ 89

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG-YDSDLH 142
                ++  F++ M +  I     T+++++ +C++L+ L+ GR +H  +   G  ++D+ 
Sbjct: 90  LGSYREAFHFFKLMELQGIHADTVTYASLLDACSNLASLSQGRKLHARIAELGLLEADVV 149

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           +Q +++  Y+K   +  AR +FDR+ +K++VAW+++I  Y QNG    A+ LF  M   G
Sbjct: 150 LQTSILTMYSKCGRLGEARGIFDRIGEKNIVAWSAIIIAYAQNGDCSTALKLFWKMEQAG 209

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
                TT V VL AC+  G +D                         + Y     +   R
Sbjct: 210 QKASETTFVSVLYACSHAGLVD-------------------------DAYYYFTTMKSER 244

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           ++  +      I     +   G  G   +A EL  RM+A     + V +  +L AC   G
Sbjct: 245 KLEPLPGHYGCI-----VDLLGRAGRLADAEELIQRMKA---PQSGVLWTTLLGACKTHG 296

Query: 323 LVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAG---LLNEAYKFVKDVIGEKPAPA 378
            ++   R    +R+   L PG    +V + +++  AG   L     K + D+  +KPA  
Sbjct: 297 DMKLAERAAERIRE---LDPGSATPYVLLSNVYSEAGRWDLAASVRKRMDDMKVKKPAGK 353

Query: 379 VWTAMLGACKMHK 391
            W  + G  K+H+
Sbjct: 354 SWVEVRG--KLHE 364


>gi|41469322|gb|AAS07178.1| putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
 gi|108709518|gb|ABF97313.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 654

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/595 (35%), Positives = 337/595 (56%), Gaps = 20/595 (3%)

Query: 5   QPHSPAYEAILKAG-----PRLKPLQ-----QVHAHLIVAGY--GRSRSML-TKLLSLVC 51
            P   A+ A+LKA      P  +P       Q+HA  +V G+  G   ++L T +LS   
Sbjct: 61  DPTPRAFSALLKAASSSASPPRRPSSLGLGAQLHAQAVVRGFLGGDDSTILATAVLSFYA 120

Query: 52  DAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIV--SNISPSNYTF 109
                  A+++F  +P  ++  +N LI   ++A    +++L +R M    S+++P  YTF
Sbjct: 121 SCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTF 180

Query: 110 SAVIKSCAHLS----ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
            A++            L LG A+H HV  +G + D  V A+LV+ YA    ++ A+  FD
Sbjct: 181 PALLSGIGREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFD 240

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
           ++     + W+SMIS Y      + A+ +F  M    + P       V + C ++G +++
Sbjct: 241 QVGSSDPIVWSSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEM 300

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ VH   +    + +  +  +L+ MY+ CG ++ A+++F     +NVI++ +MIS  G 
Sbjct: 301 GKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQ 360

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           HGY  EA+E F +M+  G+ P+ VT + ++S+  HAGLV EG ++F SM    G+ P  +
Sbjct: 361 HGYPKEALEHFRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQ 420

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405
           H+ C+VD+  R+G + +A K + ++  E  AP +W  +LGAC  H++ + G  +AE L  
Sbjct: 421 HYACVVDMLARSGEIGKAMKTINEMPFEAEAP-LWRIVLGACSKHRDIETGKRIAEMLFE 479

Query: 406 VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK 465
           +EP    +Y++L NIYA  GR    E VR++M ++G+ K   +S +E+ Q+ Y F + D+
Sbjct: 480 MEPYEATNYILLGNIYARLGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDR 539

Query: 466 SHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
           SHP + EIY+ LD L+   + AGYVP+   A H ++ + +E SL YH EKLA AFG +  
Sbjct: 540 SHPISREIYRNLDRLISTIKVAGYVPDISFAAHNIQRDRKEESLYYHCEKLAFAFGDLAA 599

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
             G T+RI+KNLR+C DCH A K+ S+ T REII+RD  RFHHF  G CSC DYW
Sbjct: 600 PSGGTLRIMKNLRVCGDCHCAYKYFSLVTGREIILRDNQRFHHFNSGFCSCGDYW 654


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/552 (36%), Positives = 325/552 (58%), Gaps = 30/552 (5%)

Query: 30  HLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTD 89
           ++++ GY R+R + T              A+ +F  +P  D   +N ++   ++  F  +
Sbjct: 30  NVMLTGYVRNRDLKT--------------ARALFERMPERDIVSWNAMLSGYAQNGFVDE 75

Query: 90  SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC-HVFVSGYDSDLHVQAALV 148
           +   + +M + N    N   +A +++         GR      +F S  D  L     L+
Sbjct: 76  AREIFYKMPLKNGISWNGLLAAYVQN---------GRIEDAKRLFESKMDWTLVSWNCLM 126

Query: 149 NFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
             + +       R +FD MP +  ++W++MI+GY QNG ++EA+  F  M+      + +
Sbjct: 127 GGFVRKR-----RNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRS 181

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           +  C L+ C+ +  ++LGR +H  +V  G      +  +L+ MY +CG++ +AR+ F  +
Sbjct: 182 SFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEI 241

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
            E +V++W  MI GY  HG+G EA+ +F  M+  G+RP++ T V+VL+AC+HAGLV +G 
Sbjct: 242 LEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGS 301

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388
             F SM ++YG+   + H+ CMVDL GRAG L EA   +K++  E P  A W A+LGA +
Sbjct: 302 EYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFE-PDAATWGALLGASR 360

Query: 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGY 448
           +H N +LG + A+ +  +EP N G Y++LS +YA +GR      +R  M  KG+KK  GY
Sbjct: 361 IHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGY 420

Query: 449 STVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYS 508
           S +EV  K + F +GD SHP+T++IY +L+E+  + ++ GY+  +    H++EEEE+ + 
Sbjct: 421 SWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHM 480

Query: 509 LRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHH 568
           L+YHSEKLA+A+G++    G  IR++KNLR+C DCH+AIK+IS    R II+RD  RFH+
Sbjct: 481 LKYHSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHY 540

Query: 569 FKRGSCSCLDYW 580
           F+ GSCSC D+W
Sbjct: 541 FEGGSCSCRDFW 552



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 169/368 (45%), Gaps = 46/368 (12%)

Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
           + DL     ++  Y ++ ++  AR +F+RMP++ +V+WN+M+SGY QNGF  EA  +F  
Sbjct: 23  ERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYK 82

Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
           M       +  +   +LAA  Q G I+  + + E      +D  +V    L+      G 
Sbjct: 83  M----PLKNGISWNGLLAAYVQNGRIEDAKRLFE----SKMDWTLVSWNCLMG-----GF 129

Query: 258 VSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317
           V K R +FD M + + I+W+AMI+GY  +G   EA+  F  M+    R N  +F   LS 
Sbjct: 130 VRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALST 189

Query: 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377
           C++   ++ G ++   + +  G   G      ++ ++ + G ++EA    ++++ EK   
Sbjct: 190 CSNIAALELGRQLHCRLVKA-GYQTGWYVGNALLAMYCKCGSIDEARDAFQEIL-EKDVV 247

Query: 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437
           + W  M+     H   +  + V E L+      P    M+S + A +             
Sbjct: 248 S-WNTMIHGYARHGFGEEALTVFE-LMKTTGIRPDDATMVSVLAACS------------- 292

Query: 438 IQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQY--LDELMGRCREAGYVPESES 495
                  H G     VDQ +  F   ++ +  T ++  Y  + +L+GR   AG + E+++
Sbjct: 293 -------HAGL----VDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGR---AGQLEEAQN 338

Query: 496 AMHELEEE 503
            M  +  E
Sbjct: 339 LMKNMPFE 346



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 34/237 (14%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H  L+ AGY     +   LL++ C  G I  A+  F  I   D   +NT+I   ++ 
Sbjct: 200 RQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARH 259

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
            F  ++L  +  M  + I P + T  +V+ +C+H  +++ G         S Y       
Sbjct: 260 GFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQG---------SEY------- 303

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
                FY+ + +  +  K         +V +  M+    + G  +EA    NLM++    
Sbjct: 304 -----FYSMNRDYGITAK---------LVHYTCMVDLLGRAGQLEEAQ---NLMKNMPFE 346

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
           PD+ T   +L A    G+ +LG    + I+ +    N  +   L  +YA  G  S A
Sbjct: 347 PDAATWGALLGASRIHGNTELGEKAAQ-IIFEMEPHNSGMYILLSKLYAASGRWSDA 402


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/594 (35%), Positives = 342/594 (57%), Gaps = 50/594 (8%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L   + +HAH++  G  +   +   L+++    G  ++A ++F  +P  D   + +++  
Sbjct: 87  LTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTA 146

Query: 81  NSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
            ++AN S  +L  +  +  S+ + P ++ FSA++K+CA+L  ++ GR VHCH  VS Y +
Sbjct: 147 LNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYAN 206

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL-- 197
           D  V+++LV+ YAK   ++ A+ VFD +  K+ ++W +M+SGY ++G  +EA+ LF +  
Sbjct: 207 DEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILP 266

Query: 198 -----------------------------MRDFGVNP-DSTTCVCVLAACAQLGDIDLGR 227
                                        MR   V+  D      ++ ACA L     GR
Sbjct: 267 VKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGR 326

Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
            VH                +LI+MYA+C +V  A++IF  M   +V++WT++I G   HG
Sbjct: 327 QVH--------------GNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHG 372

Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
              +A+ L+  M +HGV+PN VTFV ++ AC+H G V++G  +F SM ++YG+ P ++H+
Sbjct: 373 QAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHY 432

Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL-SV 406
            C++DL GR+GLL+EA   +   +   P    W A+L ACK      +G+ +A+HL+ S 
Sbjct: 433 TCLLDLLGRSGLLDEAENLIH-TMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSF 491

Query: 407 EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKS 466
           + ++P  Y++LSNIYA A    +V   R  + +  ++K  G+S+VEV ++  +F  G+ S
Sbjct: 492 KLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETS 551

Query: 467 HPNTNEIYQYLDELMGRCR-EAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT 525
           HP   +I++ L +L    R   GYVP++   +H+++E+E+E  L +HSE+ A+A+GL++ 
Sbjct: 552 HPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKA 611

Query: 526 SPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDY 579
            PG  IRIVKNLR+C DCH  +K IS  T REIIVRD  R+HHFK G CSC D+
Sbjct: 612 VPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 665



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 130/265 (49%), Gaps = 16/265 (6%)

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
            ++++R  K  FS   +  ++  +  +       FS + ++      L   +A+H H+  
Sbjct: 49  KSIVVRRKKLLFSLTFIFMFKLFVFFDFGS---YFSRMNRT------LTTAKALHAHIVK 99

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ-NGFAKEAIG 193
            G      +   LVN Y K      A +VFD MP +  +AW S+++   Q N   K    
Sbjct: 100 LGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSV 159

Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH-EFIVGQGLDVNVVLATSLINMY 252
             ++    G+ PD      ++ ACA LG ID GR VH  FIV +  +  VV  +SL++MY
Sbjct: 160 FSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVV-KSSLVDMY 218

Query: 253 ARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312
           A+CG ++ A+ +FD +   N I+WTAM+SGY   G   EA+ELF  +       N  ++ 
Sbjct: 219 AKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVK----NLYSWT 274

Query: 313 AVLSACAHAGLVQEGHRVFASMRQE 337
           A++S    +G   E   VF  MR+E
Sbjct: 275 ALISGFVQSGKGLEAFSVFTEMRRE 299



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 165/370 (44%), Gaps = 54/370 (14%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + A++KA   L  +   +QVH H IV+ Y     + + L+ +    G +  A+ 
Sbjct: 170 RPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKA 229

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI------------------S 103
           +F  I   ++  +  ++   +K+    ++L  +R + V N+                  +
Sbjct: 230 VFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEA 289

Query: 104 PSNYT--------------FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149
            S +T               S+++ +CA+L+    GR VH +              AL++
Sbjct: 290 FSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGN--------------ALID 335

Query: 150 FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT 209
            YAK ++V  A+ +F RM  + VV+W S+I G  Q+G A++A+ L++ M   GV P+  T
Sbjct: 336 MYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVT 395

Query: 210 CVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
            V ++ AC+ +G ++ GR + + +    G+  ++   T L+++  R G + +A  +   M
Sbjct: 396 FVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM 455

Query: 269 S-ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL---V 324
               +   W A++S     G G   + +   + +     +  T++ + +  A A L   V
Sbjct: 456 PFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKV 515

Query: 325 QEGHRVFASM 334
            E  R    M
Sbjct: 516 SEARRKLGEM 525


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/561 (36%), Positives = 317/561 (56%), Gaps = 11/561 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLT-----KLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
            QVHA ++     RS S+L       LL        +   +R+F  +P  D+  +N +I 
Sbjct: 256 HQVHALVL-----RSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIA 310

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             +    +   L  +R M           ++ ++     L  +++G+ +H  + + G  S
Sbjct: 311 AYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLAS 370

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           +  +  AL++ Y+K   +D A+  F    +KS ++W ++I+GY QNG  +EA+ LF+ MR
Sbjct: 371 EDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMR 430

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+ PD  T   ++ A + L  I LGR +H +++  G   +V   + L++MYA+CG + 
Sbjct: 431 RAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLD 490

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           +A   FD M E N I+W A+IS Y  +G    A+++F  M   G  P++VTF++VL+AC+
Sbjct: 491 EALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACS 550

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H GL  E  + F  M+ +Y + P  EH+ C++D  GR G  ++  K + + +  K  P +
Sbjct: 551 HNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVE-MPFKADPII 609

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           WT++L +C++H N +L    A+ L  +EP +   YV+LSNIYA AG+ +    V+ IM  
Sbjct: 610 WTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRD 669

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           +G++K  GYS VE+ QK Y F+  D + P  +EI   LD L     + GY P+   A+H 
Sbjct: 670 RGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHM 729

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           ++ E +  SL+YHSE+LA+AF LM T  G  IRI+KNL  C+DCH+ IK IS   NR+II
Sbjct: 730 VDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDII 789

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           VRD  RFHHFK G CSC DYW
Sbjct: 790 VRDSRRFHHFKDGVCSCGDYW 810



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 185/341 (54%), Gaps = 3/341 (0%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LL   C  G +  A+R+F  +   D+  +N +++  SK    T +L  +  M  + I  +
Sbjct: 176 LLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPAT 235

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           ++TFS+++   A ++ L LG  VH  V  S    ++ V  +L++FY+K + +D  R++FD
Sbjct: 236 HFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFD 295

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP++  V++N +I+ Y  N  A   + LF  M+  G +        +L+    L D+ +
Sbjct: 296 EMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHI 355

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ +H  +V  GL    +L  +LI+MY++CG +  A+  F   SE + I+WTA+I+GY  
Sbjct: 356 GKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQ 415

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           +G   EA++LF  MR  G+RP+  TF +++ A +   ++  G ++ + + +  G    V 
Sbjct: 416 NGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS-GYKSSVF 474

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
               +VD++ + G L+EA +   D + E+ + + W A++ A
Sbjct: 475 SGSVLVDMYAKCGCLDEALRTF-DEMPERNSIS-WNAVISA 513



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 156/344 (45%), Gaps = 12/344 (3%)

Query: 43  LTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI 102
           L  +LS    +G +  AQ +F   P  ++  +  ++  ++ A  ++D+L  +R M+   +
Sbjct: 77  LNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGV 136

Query: 103 SPSNYTFSAVIK--SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
            P   T + V+    C   S+       H      G D+ + V   L++ Y K   +  A
Sbjct: 137 IPDRVTVTTVLNLPGCTVPSL-------HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAA 189

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
           R+VF  M DK  V +N+M+ G  + G   +A+ LF  MR  G+     T   +L   A +
Sbjct: 190 RRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGM 249

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             + LG  VH  ++     +NV +  SL++ Y++C  +   R +FD M E + +++  +I
Sbjct: 250 AHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVII 309

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           + Y  +      + LF  M+  G     + +  +LS       V  G ++ A +    GL
Sbjct: 310 AAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVL-LGL 368

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
                    ++D++ + G+L+ A     +   EK A + WTA++
Sbjct: 369 ASEDLLGNALIDMYSKCGMLDAAKSNFSNR-SEKSAIS-WTALI 410



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 111/250 (44%), Gaps = 41/250 (16%)

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQN---------------------------- 185
           S ++  AR +FD+MP K++ + N ++S Y  +                            
Sbjct: 56  SGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAH 115

Query: 186 ---GFAKEAIGLFNLMRDFGVNPDSTTCVCV--LAACAQLGDIDLGRWVHEFIVGQGLDV 240
              G   +A+ LF  M   GV PD  T   V  L  C           +H F +  GLD 
Sbjct: 116 AAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDT 168

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +V +  +L++ Y + G ++ AR +F  M + + + + AM+ G    G  T+A++LF  MR
Sbjct: 169 HVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMR 228

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G+   + TF ++L+  A    +  GH+V A + +   +L  V  +  ++D + +   L
Sbjct: 229 RAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVL-NVFVNNSLLDFYSKCDCL 287

Query: 361 NEAYKFVKDV 370
           ++  +   ++
Sbjct: 288 DDMRRLFDEM 297



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + +I+KA   L  +   +Q+H++LI +GY  S    + L+ +    G +  A R
Sbjct: 435 RPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALR 494

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
            F  +P  +S  +N +I   +    + +++  +  M+    +P + TF +V+ +C+H
Sbjct: 495 TFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSH 551


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/534 (38%), Positives = 327/534 (61%), Gaps = 18/534 (3%)

Query: 61  RIFFCIPSPDSFLFNTLIIRNSKANF-STDSLLFYRRMIV---SNISPSNYTFSAVIKSC 116
           +I   I +P+SF +N LI   SK+      ++L Y+ +I    + + P  +T+  V+K+C
Sbjct: 36  QILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKAC 95

Query: 117 AHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-KSVVAW 175
           A+L  L  G+ VH HV   G++ D ++  +L++FYA    ++ ARKVFDRM + ++VV+W
Sbjct: 96  AYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSW 155

Query: 176 NSMISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234
           N MI  Y + G     + +F  +M+ +   PD  T   V+ AC  LG + LG WVH F++
Sbjct: 156 NVMIDSYAKVGDYDIVLIMFCEMMKVY--EPDCYTMQSVIRACGGLGSLSLGMWVHAFVL 213

Query: 235 GQGLDVNVV----LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGT 290
            +  D NVV    + T L++MY +CG++  A+++F+ MS  +V +W ++I G+ +HG   
Sbjct: 214 KK-CDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAK 272

Query: 291 EAVELFHRM-RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
            A++ F RM +   + PN++TFV VLSAC H+G+V EG   F  M +EY + P + H+ C
Sbjct: 273 AALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGC 332

Query: 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC-KMHKNFDLGVEVAEHLLSVEP 408
           +VDL+ RAG + EA   V + +  KP   +W ++L AC K H + +L  E+A+ +     
Sbjct: 333 LVDLYARAGHIQEALNVVSE-MPIKPDAVIWRSLLDACYKQHASVELSEEMAKQIFESNG 391

Query: 409 E-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSH 467
               G YV+LS +YA A R + V ++R +M  KG+ K  G S +E++   + F  GD +H
Sbjct: 392 SVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKKPGCSLIEINGAAHEFFAGDTNH 451

Query: 468 PNTNEIYQYLDELMGRCREAGYVPE-SESAMHELEEEEREYSLRYHSEKLALAFGLMRTS 526
           P + +IY++++E+  +    GY+P+ S + + +   E ++ ++R HSE+LA+AFGL+ + 
Sbjct: 452 PQSKDIYKFMNEIQEKLESVGYLPDYSGAPLIDEINEGKQNTMRLHSERLAIAFGLLNSK 511

Query: 527 PGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           P M IR+ KNLR+C DCH   K IS   N EIIVRDR+RFHHFK GSCSC+DYW
Sbjct: 512 PSMPIRVFKNLRVCNDCHKVTKLISRIYNVEIIVRDRVRFHHFKDGSCSCMDYW 565



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 25/348 (7%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P    Y  +LKA   L  L   +QVHAH++  G+     +   L+      G++  A+++
Sbjct: 83  PDKHTYPFVLKACAYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKV 142

Query: 63  FFCIPSPDSFL-FNTLIIRNSK-ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
           F  +    + + +N +I   +K  ++    ++F   M V    P  YT  +VI++C  L 
Sbjct: 143 FDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEMMKV--YEPDCYTMQSVIRACGGLG 200

Query: 121 ILNLGRAVHCHVFVSGYDS---DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS 177
            L+LG  VH  V      +   D+ V   LV+ Y K  ++++A++VF+ M  + V +WNS
Sbjct: 201 SLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNS 260

Query: 178 MISGYEQNGFAKEAIGLF-NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236
           +I G+  +G AK A+  F  +++   + P+S T V VL+AC   G +D G    E +  +
Sbjct: 261 IILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKE 320

Query: 237 -GLDVNVVLATSLINMYARCGNVSKAREIFDMMS-ELNVIAWTAMISG-YGMHGYGTEAV 293
             ++ ++V    L+++YAR G++ +A  +   M  + + + W +++   Y  H     +V
Sbjct: 321 YNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHA----SV 376

Query: 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
           EL   M       N        S C  A ++       AS   + GLL
Sbjct: 377 ELSEEMAKQIFESNG-------SVCGGAYVLLSKVYASASRWNDVGLL 417


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/591 (37%), Positives = 326/591 (55%), Gaps = 40/591 (6%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVC---DAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           L+Q H+ LI  G     +   +LLS +    D+ F  YA R+    P P   LFN L   
Sbjct: 21  LRQHHSQLIRLGVASHAAHARRLLSFLARDPDSHF-PYASRLLAHHPDPHPALFNPLF-- 77

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC------AHLSILNLGRAVHCH--- 131
              A  +  +      M+   + P ++TF  ++ S       A L  L L    H H   
Sbjct: 78  --SALPTRHAARLLALMLSLPLRPDHFTFPQILPSAQPLHLVAQLHALLLKLGFHAHTQS 135

Query: 132 -------------------VFVSGYDS-DLHVQAALVNFYAKSNNVDVARKVFDRMPDKS 171
                              VF  G  + D+     +V    K    D AR +FD MP+++
Sbjct: 136 LNALLAAYLANARPDLASRVFRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERN 195

Query: 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231
           +V+WN+M+SGY +     +A+ +F+ MR  GV+ +       + AC   G +  GR VH 
Sbjct: 196 LVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHR 255

Query: 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM--SELNVIAWTAMISGYGMHGYG 289
           ++   G+ ++  LAT++++MY +CG V +A  +F+ +  +   +  W  MI G+ +HG G
Sbjct: 256 WVEQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRG 315

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
            +A++LF RM   GV P++VT V VL+ACAHAG++ EG   F  + Q YG+ P +EH+ C
Sbjct: 316 QDALKLFGRMEREGVAPDDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGC 375

Query: 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409
           MVDL+GRAG L EA K ++D+  E P   V  A+ GA K+H + DLG  +   ++ ++P+
Sbjct: 376 MVDLYGRAGRLEEAKKVIQDMPME-PDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQ 434

Query: 410 NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPN 469
           N G YV+L+N+ A AGR + V  VR +M ++ + K  G S +EV  +   F  G   HP 
Sbjct: 435 NSGRYVLLANLLATAGRWEDVARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPR 494

Query: 470 TNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGM 529
             E+Y    ++M + R  GYVP++   +H + EEE+E  L YHSEKLA+AFGL+ T PG 
Sbjct: 495 AEEVYAMASDMMRKIRAEGYVPDTRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGD 554

Query: 530 TIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           T+RI KNLR+C DCH A KF+S    R+I+VRDR RFHHFK G CSC DYW
Sbjct: 555 TMRITKNLRVCRDCHEATKFVSRVFERQIVVRDRNRFHHFKDGQCSCKDYW 605


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/561 (36%), Positives = 317/561 (56%), Gaps = 11/561 (1%)

Query: 25  QQVHAHLIVAGYGRSRSMLT-----KLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79
            QVHA ++     RS S+L       LL        +   +R+F  +P  D+  +N +I 
Sbjct: 256 HQVHALVL-----RSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIA 310

Query: 80  RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS 139
             +    +   L  +R M           ++ ++     L  +++G+ +H  + + G  S
Sbjct: 311 AYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLAS 370

Query: 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199
           +  +  AL++ Y+K   +D A+  F    +KS ++W ++I+GY QNG  +EA+ LF+ MR
Sbjct: 371 EDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMR 430

Query: 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259
             G+ PD  T   ++ A + L  I LGR +H +++  G   +V   + L++MYA+CG + 
Sbjct: 431 RAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLD 490

Query: 260 KAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319
           +A   FD M E N I+W A+IS Y  +G    A+++F  M   G  P++VTF++VL+AC+
Sbjct: 491 EALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACS 550

Query: 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379
           H GL  E  + F  M+ +Y + P  EH+ C++D  GR G  ++  K + + +  K  P +
Sbjct: 551 HNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVE-MPFKADPII 609

Query: 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
           WT++L +C++H N +L    A+ L  +EP +   YV+LSNIYA AG+ +    V+ IM  
Sbjct: 610 WTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRD 669

Query: 440 KGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHE 499
           +G++K  GYS VE+ QK Y F+  D + P  +EI   LD L     + GY P+   A+H 
Sbjct: 670 RGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHM 729

Query: 500 LEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559
           ++ E +  SL+YHSE+LA+AF LM T  G  IRI+KNL  C+DCH+ IK IS   NR+II
Sbjct: 730 VDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDII 789

Query: 560 VRDRLRFHHFKRGSCSCLDYW 580
           VRD  RFHHFK G CSC DYW
Sbjct: 790 VRDSRRFHHFKDGVCSCGDYW 810



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 185/341 (54%), Gaps = 3/341 (0%)

Query: 46  LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
           LL   C  G +  A+R+F  +   D+  +N +++  SK    T +L  +  M  + I  +
Sbjct: 176 LLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPAT 235

Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
           ++TFS+++   A ++ L LG  VH  V  S    ++ V  +L++FY+K + +D  R++FD
Sbjct: 236 HFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFD 295

Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
            MP++  V++N +I+ Y  N  A   + LF  M+  G +        +L+    L D+ +
Sbjct: 296 EMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHI 355

Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
           G+ +H  +V  GL    +L  +LI+MY++CG +  A+  F   SE + I+WTA+I+GY  
Sbjct: 356 GKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQ 415

Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
           +G   EA++LF  MR  G+RP+  TF +++ A +   ++  G ++ + + +  G    V 
Sbjct: 416 NGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS-GYKSSVF 474

Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
               +VD++ + G L+EA +   D + E+ + + W A++ A
Sbjct: 475 SGSVLVDMYAKCGCLDEALRTF-DEMPERNSIS-WNAVISA 513



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 156/344 (45%), Gaps = 12/344 (3%)

Query: 43  LTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI 102
           L  +LS    +G +  AQ +F   P  ++  +  ++  ++ A  ++D+L  +R M+   +
Sbjct: 77  LNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGV 136

Query: 103 SPSNYTFSAVIK--SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160
            P   T + V+    C   S+       H      G D+ + V   L++ Y K   +  A
Sbjct: 137 IPDRVTVTTVLNLPGCTVPSL-------HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAA 189

Query: 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220
           R+VF  M DK  V +N+M+ G  + G   +A+ LF  MR  G+     T   +L   A +
Sbjct: 190 RRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGM 249

Query: 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMI 280
             + LG  VH  ++     +NV +  SL++ Y++C  +   R +FD M E + +++  +I
Sbjct: 250 AHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVII 309

Query: 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340
           + Y  +      + LF  M+  G     + +  +LS       V  G ++ A +    GL
Sbjct: 310 AAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVL-LGL 368

Query: 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
                    ++D++ + G+L+ A     +   EK A + WTA++
Sbjct: 369 ASEDLLGNALIDMYSKCGMLDAAKSNFSNR-SEKSAIS-WTALI 410



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 111/250 (44%), Gaps = 41/250 (16%)

Query: 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQN---------------------------- 185
           S ++  AR +FD+MP K++ + N ++S Y  +                            
Sbjct: 56  SGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAH 115

Query: 186 ---GFAKEAIGLFNLMRDFGVNPDSTTCVCV--LAACAQLGDIDLGRWVHEFIVGQGLDV 240
              G   +A+ LF  M   GV PD  T   V  L  C           +H F +  GLD 
Sbjct: 116 AAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDT 168

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +V +  +L++ Y + G ++ AR +F  M + + + + AM+ G    G  T+A++LF  MR
Sbjct: 169 HVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMR 228

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
             G+   + TF ++L+  A    +  GH+V A + +   +L  V  +  ++D + +   L
Sbjct: 229 RAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVL-NVFVNNSLLDFYSKCDCL 287

Query: 361 NEAYKFVKDV 370
           ++  +   ++
Sbjct: 288 DDMRRLFDEM 297



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 5   QPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P    + +I+KA   L  +   +Q+H++LI +GY  S    + L+ +    G +  A R
Sbjct: 435 RPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALR 494

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
            F  +P  +S  +N +I   +    + +++  +  M+    +P + TF +V+ +C+H
Sbjct: 495 TFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSH 551


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/583 (35%), Positives = 333/583 (57%), Gaps = 9/583 (1%)

Query: 3   NKQPHSPAYEAILKAGPRL---KPLQQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITY 58
           N  P      ++ KA   L   K  Q+ H   ++ G   S   + + L+ +    G    
Sbjct: 160 NVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTRE 219

Query: 59  AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
           A+ +   +   D  L   LI+  S+    T+++  ++ M+V  + P+ YT+++V+ SC +
Sbjct: 220 AKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGN 279

Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
           L  +  G+ +H  +  SG++S L  Q +L+  Y + + VD + +VF  +   + V+W S+
Sbjct: 280 LKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSL 339

Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
           ISG  QNG  + A+  F  M    + P+S T    L  C+ L   + GR +H  +   G 
Sbjct: 340 ISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGF 399

Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
           D +    + LI++Y +CG    AR +FD +SE++VI+   MI  Y  +G+G EA++LF R
Sbjct: 400 DRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFER 459

Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
           M   G++PN+VT ++VL AC ++ LV+EG  +F S R++  +L   +H+ CMVDL GRAG
Sbjct: 460 MINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFRKDKIMLTN-DHYACMVDLLGRAG 518

Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
            L EA     +VI   P   +W  +L ACK+H+  ++   +   +L +EP + G  +++S
Sbjct: 519 RLEEAEMLTTEVIN--PDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLILMS 576

Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK-SHPNTNEIYQYL 477
           N+YA  G+ +RV  +++ M    LKK+   S VE++++ + F  GD  SHPN+ +I + L
Sbjct: 577 NLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQILENL 636

Query: 478 DELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNL 537
           +EL+ + ++ GYV +      ++EE  +E SL  HSEKLA+AF + R   G +IRI+KNL
Sbjct: 637 EELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNVGG-SIRILKNL 695

Query: 538 RMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R+CVDCHS IK +S    REII RD  RFHHF+ GSCSC DYW
Sbjct: 696 RVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCGDYW 738



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 177/351 (50%), Gaps = 4/351 (1%)

Query: 24  LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           ++ + AH++ +G+    S  +KL+      G I YA+++F  +       +N+LI    K
Sbjct: 84  IKTIQAHMLKSGFPAEISG-SKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIK 142

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLH 142
              S +++  YR MI +N+ P  YT S+V K+ + LS+    +  H    + G + S++ 
Sbjct: 143 HRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVF 202

Query: 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
           V +ALV+ Y K      A+ V DR+ +K VV   ++I GY Q G   EA+  F  M    
Sbjct: 203 VGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEK 262

Query: 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262
           V P+  T   VL +C  L DI  G+ +H  +V  G +  +   TSL+ MY RC  V  + 
Sbjct: 263 VQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSL 322

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
            +F  +   N ++WT++ISG   +G    A+  F +M    ++PN+ T  + L  C++  
Sbjct: 323 RVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLA 382

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373
           + +EG ++   +  +YG          ++DL+G+ G  + A + V D + E
Sbjct: 383 MFEEGRQIHG-IVTKYGFDRDKYAGSGLIDLYGKCGCSDMA-RLVFDTLSE 431



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 148/290 (51%), Gaps = 5/290 (1%)

Query: 98  IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157
           I  +   + + FS +++ C     ++  + +  H+  SG+ +++   + LV+   K  ++
Sbjct: 57  ITCDTLTTTHNFSQLLRQCIDERSISGIKTIQAHMLKSGFPAEIS-GSKLVDASLKCGDI 115

Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
           D AR+VFD M ++ +V WNS+I+   ++  +KEA+ ++ LM    V PD  T   V  A 
Sbjct: 116 DYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAF 175

Query: 218 AQLGDIDLGRWVHEFIVGQGLDV-NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAW 276
           + L      +  H   V  GL+V NV + ++L++MY + G   +A+ + D + E +V+  
Sbjct: 176 SDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLI 235

Query: 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336
           TA+I GY   G  TEAV+ F  M    V+PN  T+ +VL +C +   +  G  +   M +
Sbjct: 236 TALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVK 295

Query: 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
             G    +     ++ ++ R  L++++ +  K +  E P    WT+++  
Sbjct: 296 S-GFESALASQTSLLTMYLRCSLVDDSLRVFKCI--EYPNQVSWTSLISG 342



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 100/215 (46%), Gaps = 15/215 (6%)

Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
           +  + L++   +CG++  AR++FD MSE +++ W ++I+    H    EAVE++  M  +
Sbjct: 100 ISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITN 159

Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH-----VCMVDLFGRA 357
            V P+  T  +V  A +   L +E  R          ++ G+E         +VD++ + 
Sbjct: 160 NVLPDEYTLSSVFKAFSDLSLEKEAQRSHG-----LAVILGLEVSNVFVGSALVDMYVKF 214

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           G   EA K V D + EK    +   ++G  +  ++ +  V+  + +L VE   P  Y   
Sbjct: 215 GKTREA-KLVLDRVEEKDVVLITALIVGYSQKGEDTE-AVKAFQSML-VEKVQPNEYTYA 271

Query: 418 SNIYALAGRMD--RVEVVRNIMIQKGLKKHVGYST 450
           S + +     D    +++  +M++ G +  +   T
Sbjct: 272 SVLISCGNLKDIGNGKLIHGLMVKSGFESALASQT 306


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/614 (33%), Positives = 333/614 (54%), Gaps = 39/614 (6%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P   A  +IL A  +LK L+    +H   +  G      + T L++L  +   +  AQ 
Sbjct: 340 KPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQT 399

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  +   +N+L        F    L  +R M+++ + P   T  +++ +C+ L  
Sbjct: 400 VFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQD 459

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +H      G   D+ V  AL++ YAK   V  A+ VFD +P + V +WN +++ 
Sbjct: 460 LKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTA 519

Query: 182 Y-----------------------------------EQNGFAKEAIGLFNLMRDFGVNPD 206
           Y                                    +N   +EA+ +F  M+  G  PD
Sbjct: 520 YFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPD 579

Query: 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFD 266
            TT   +L AC+    + +G+ +H ++     D ++    +L++MYA+CG +S +R +FD
Sbjct: 580 ETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFD 639

Query: 267 MMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
           MM   +V +W  MI   GMHG G EA+ LF +M    V+P++ TF  VLSAC+H+ LV+E
Sbjct: 640 MMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEE 699

Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386
           G ++F SM +++ + P  EH+ C+VD++ RAG L EAY F++ +  E P    W A L  
Sbjct: 700 GVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPME-PTAIAWKAFLAG 758

Query: 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446
           C+++KN +L    A+ L  ++P    +YV L NI   A        +R +M ++G+ K  
Sbjct: 759 CRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTP 818

Query: 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEERE 506
           G S   V  + + F  GDKS+  +++IY +LDEL  + + AGY P+++  +H++++EE+ 
Sbjct: 819 GCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKA 878

Query: 507 YSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRF 566
            SL  HSEKLA+AFG++  +   TIR+ KNLR+C DCH+AIK++S      I+VRD LRF
Sbjct: 879 ESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRF 938

Query: 567 HHFKRGSCSCLDYW 580
           HHFK G+CSC D+W
Sbjct: 939 HHFKNGNCSCKDFW 952



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 190/377 (50%), Gaps = 3/377 (0%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIR 80
           LK  +++H  ++  G      + +  ++       +  AQ +F  +P  D   +N+L   
Sbjct: 157 LKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSC 216

Query: 81  NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140
                F    L  +R M++  + P   T S ++ +C+ L  L  G+A+H      G   +
Sbjct: 217 YVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVEN 276

Query: 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200
           + V  ALVN Y     V  A+ VFD MP ++V+ WNS+ S Y   GF ++ + +F  M  
Sbjct: 277 VFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGL 336

Query: 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260
            GV PD      +L AC+QL D+  G+ +H F V  G+  +V + T+L+N+YA C  V +
Sbjct: 337 NGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVRE 396

Query: 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
           A+ +FD+M   NV+ W ++ S Y   G+  + + +F  M  +GV+P+ VT +++L AC+ 
Sbjct: 397 AQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSD 456

Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
              ++ G +V       +G++  V     ++ L+ +   + EA + V D+I  +   A W
Sbjct: 457 LQDLKSG-KVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREA-QVVFDLIPHREV-ASW 513

Query: 381 TAMLGACKMHKNFDLGV 397
             +L A   +K ++ G+
Sbjct: 514 NGILTAYFTNKEYEKGL 530



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 218/448 (48%), Gaps = 11/448 (2%)

Query: 5   QPHSPAYEAILKAGPRLK---PLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P  P + A+ KA    +    ++Q H      G     S+    +        +  A+R
Sbjct: 37  KPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARR 96

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  + + D   +N+L        F    L  +R+M ++ +  +  T S+++  C+ L  
Sbjct: 97  VFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQD 156

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +H  V   G   D+ V +A VNFYAK   V  A+ VFD MP + VV WNS+ S 
Sbjct: 157 LKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSC 216

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y   GF ++ + +F  M   GV PD  T  C+L+AC+ L D+  G+ +H F +  G+  N
Sbjct: 217 YVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVEN 276

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V ++ +L+N+Y  C  V +A+ +FD+M   NVI W ++ S Y   G+  + + +F  M  
Sbjct: 277 VFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGL 336

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
           +GV+P+ +   ++L AC+    ++ G +       ++G++  V     +V+L+     + 
Sbjct: 337 NGVKPDPMAMSSILPACSQLKDLKSG-KTIHGFAVKHGMVEDVFVCTALVNLYANCLCVR 395

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNF-DLGVEVAEHLLSVEPENPGHYVMLSNI 420
           EA + V D++  +     W + L +C ++  F   G+ V   ++ +    P    MLS +
Sbjct: 396 EA-QTVFDLMPHRNV-VTWNS-LSSCYVNCGFPQKGLNVFREMV-LNGVKPDLVTMLSIL 451

Query: 421 YALAGRMD--RVEVVRNIMIQKGLKKHV 446
           +A +   D    +V+    ++ G+ + V
Sbjct: 452 HACSDLQDLKSGKVIHGFAVRHGMVEDV 479



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 124/501 (24%), Positives = 213/501 (42%), Gaps = 80/501 (15%)

Query: 5   QPHSPAYEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P       IL A   L+ L+    +H   +  G   +  +   L++L      +  AQ 
Sbjct: 239 KPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQA 298

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +P  +   +N+L        F    L  +R M ++ + P     S+++ +C+ L  
Sbjct: 299 VFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKD 358

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  G+ +H      G   D+ V  ALVN YA    V  A+ VFD MP ++VV WNS+ S 
Sbjct: 359 LKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSC 418

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
           Y   GF ++ + +F  M   GV PD  T + +L AC+ L D+  G+ +H F V  G+  +
Sbjct: 419 YVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVED 478

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
           V +  +L+++YA+C  V +A+ +FD++    V +W  +++ Y  +    + + +F +M  
Sbjct: 479 VFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNR 538

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP------------------- 342
             V+ + +T+  V+  C     ++E   +F  M Q  G  P                   
Sbjct: 539 DEVKADEITWSVVIGGCVKNSRIEEAMEIFRKM-QTMGFKPDETTIYSILRACSLSECLR 597

Query: 343 -GVEHHV---------------CMVDLFGRAGLLNEAYKF-----VKDVIGE-------- 373
            G E H                 +VD++ + G L+ +        +KDV           
Sbjct: 598 MGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANG 657

Query: 374 --------------------KPAPAVWTAMLGACKMHKNFDLGVEV-----AEHLLSVEP 408
                               KP  A +T +L AC      + GV++      +HL  VEP
Sbjct: 658 MHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHL--VEP 715

Query: 409 ENPGHYVMLSNIYALAGRMDR 429
           E   HY  + +IY+ AG ++ 
Sbjct: 716 E-AEHYTCVVDIYSRAGCLEE 735



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 137/275 (49%), Gaps = 1/275 (0%)

Query: 89  DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148
           +++  Y       I P    F AV K+CA        +  H      G  SD+ +  A +
Sbjct: 23  EAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFI 82

Query: 149 NFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST 208
           + Y K   V+ AR+VFD +  + VV WNS+ + Y   GF ++ + +F  M    V  +  
Sbjct: 83  HAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPL 142

Query: 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268
           T   +L  C+ L D+  G+ +H F+V  G+  +V ++++ +N YA+C  V +A+ +FD+M
Sbjct: 143 TVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLM 202

Query: 269 SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328
              +V+ W ++ S Y   G+  + + +F  M   GV+P+ VT   +LSAC+    ++ G 
Sbjct: 203 PHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSG- 261

Query: 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
           +       ++G++  V     +V+L+     + EA
Sbjct: 262 KAIHGFALKHGMVENVFVSNALVNLYESCLCVREA 296



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 83/178 (46%), Gaps = 1/178 (0%)

Query: 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           G   EAI ++   R  G+ PD    + V  ACA   D    +  H+     G+  +V + 
Sbjct: 19  GLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIG 78

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
            + I+ Y +C  V  AR +FD +   +V+ W ++ + Y   G+  + + +F +M  + V+
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363
            N +T  ++L  C+    ++ G  +   + + +G++  V      V+ + +   + EA
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVR-HGMVEDVFVSSAFVNFYAKCLCVREA 195


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/580 (36%), Positives = 334/580 (57%), Gaps = 7/580 (1%)

Query: 6   PHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSML-TKLLSLVCDAGFITYAQR 61
           P    + ++ KA   L  +   Q+ H   +V G G S   + + L+ +    G +  A+ 
Sbjct: 174 PDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARL 233

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +   +   D  LF  LI+  S      +SL  +R M    I  + YT S+V+  C +L  
Sbjct: 234 VSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLED 293

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           L  GR +H  +  +G +S +  Q +L+  Y +   VD + KVF +  + + V W S+I G
Sbjct: 294 LTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVG 353

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
             QNG  + A+  F  M    + P+S T   VL AC+ L  ++ G+ +H  ++  GLD++
Sbjct: 354 LVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDID 413

Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
             +  +LI+ Y +CG+   AR +F+ + E++V++  +MI  Y  +G+G EA++LF  M+ 
Sbjct: 414 KYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKD 473

Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
            G+ PNNVT++ VLSAC +AGL++EG  +F+S R    +    +H+ CMVDL GRAG L 
Sbjct: 474 TGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLK 533

Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
           EA   +  V        +W  +L AC++H + ++   V   ++ + PE+ G +V+LSN+Y
Sbjct: 534 EAEMLINQV--NISDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLY 591

Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
           A  G   +V  +++ M +  LKK+   S V+V+++ + F  GD SHPN  +I + L+EL+
Sbjct: 592 ASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELI 651

Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTS-PGMTIRIVKNLRMC 540
            + +E GYVP++   + +L+EE++  SL YHSEKLA+AF L R++    TIRI+KNLR+C
Sbjct: 652 EKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVC 711

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            DCH+ +KF+S    R+II RD  RFHHF+ G CSC DYW
Sbjct: 712 GDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDYW 751



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 214/460 (46%), Gaps = 57/460 (12%)

Query: 21  LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI-- 78
           +  + ++ +H +  G+    S+  KL+      G + YA+++F  +P      +N++I  
Sbjct: 93  ITDITKIQSHALKRGF--HHSLGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIAS 150

Query: 79  -IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGY 137
            IRN ++  + D    Y+RM+   I P  +TFS+V K+ + L +++ G+  H    V G 
Sbjct: 151 YIRNGRSKEAID---IYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGV 207

Query: 138 D-SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN 196
             S++ V +ALV+ YAK   +  AR V D++  K VV + ++I GY  +G   E++ +F 
Sbjct: 208 GVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFR 267

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            M   G+  +  T   VL  C  L D+  GR +H  IV  GL+  V   TSL+ MY RCG
Sbjct: 268 NMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCG 327

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
            V  + ++F      N + WT++I G   +G    A+  F +M    + PN+ T  +VL 
Sbjct: 328 LVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLR 387

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA-----------GLLN---- 361
           AC+   ++++G ++ A +  ++GL         ++D +G+            GLL     
Sbjct: 388 ACSSLAMLEQGKQIHA-IVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVV 446

Query: 362 -------------------EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEH 402
                              + +  +KD  G +P    W  +L AC    N  L +E   H
Sbjct: 447 SVNSMIYSYAQNGFGHEALQLFSGMKDT-GLEPNNVTWLGVLSAC---NNAGL-LEEGCH 501

Query: 403 LLSVEPENPG-------HYVMLSNIYALAGRMDRVEVVRN 435
           + S    N G       HY  + ++   AGR+   E++ N
Sbjct: 502 IFS-SARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLIN 540



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 152/291 (52%), Gaps = 6/291 (2%)

Query: 95  RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154
           R++ ++    S   +S++I+ C  +  +     +  H    G+   L  +  L++ Y K 
Sbjct: 66  RKLCITETIQSTKLYSSLIQQCIGIKSITDITKIQSHALKRGFHHSLGNK--LIDAYLKC 123

Query: 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
            +V  ARKVFD +P + +VAWNSMI+ Y +NG +KEAI ++  M   G+ PD  T   V 
Sbjct: 124 GSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVF 183

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDV-NVVLATSLINMYARCGNVSKAREIFDMMSELNV 273
            A + LG +  G+  H   V  G+ V NV + ++L++MYA+ G +  AR + D +   +V
Sbjct: 184 KAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDV 243

Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333
           + +TA+I GY  HG   E++++F  M   G+  N  T  +VL  C +   +  G R+   
Sbjct: 244 VLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSG-RLIHG 302

Query: 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
           +  + GL   V     ++ ++ R GL++++ K  K  I   P    WT+++
Sbjct: 303 LIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFI--NPNQVTWTSVI 351



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 105/213 (49%), Gaps = 13/213 (6%)

Query: 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303
           L   LI+ Y +CG+V  AR++FD +   +++AW +MI+ Y  +G   EA++++ RM   G
Sbjct: 112 LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 171

Query: 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH---HVCMVDLFGRAGLL 360
           + P+  TF +V  A +  GLV EG R      Q   L  GV +      +VD++ + G +
Sbjct: 172 ILPDEFTFSSVFKAFSDLGLVHEGQRAHG---QSVVLGVGVSNVFVGSALVDMYAKFGKM 228

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
            +A      V+G+     ++TA++     H      ++V  ++     E   +   LS++
Sbjct: 229 RDARLVSDQVVGKD--VVLFTALIVGYSHHGEDGESLQVFRNMTKKGIE--ANEYTLSSV 284

Query: 421 YALAGRMDRV---EVVRNIMIQKGLKKHVGYST 450
               G ++ +    ++  ++++ GL+  V   T
Sbjct: 285 LVCCGNLEDLTSGRLIHGLIVKAGLESAVASQT 317


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/486 (39%), Positives = 299/486 (61%), Gaps = 3/486 (0%)

Query: 97  MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156
           M +  +  +  T+  V+        L  GR VH  V  +G + D+ V  ALVN Y K  +
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 157 VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF--GVNPDSTTCVCVL 214
           V+ AR  F+++   +VV+W++M++ Y QNG A+ A+ L+  M     G+ P+  T + +L
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
            AC+ LG +  GR +H  +  +G D ++V+  +L+N Y RCG++  A+ +FD M   +VI
Sbjct: 121 DACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVI 180

Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
           +W++MIS +   G   EA+EL+HRM + G  P+++ F++VL AC+++G+V+     F S+
Sbjct: 181 SWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSI 240

Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
             +  + P +EH+ CMVD+ GRAG L +A   ++ ++   P P ++  ML ACK++ + +
Sbjct: 241 VGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLR-LMPFHPGPLLYMTMLSACKLYTDVE 299

Query: 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
            G   AE +  ++PEN   Y+ L+NIY+ A R      +R +M ++G+KK  G S +EV 
Sbjct: 300 RGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVL 359

Query: 455 QKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSE 514
            + + F  GDK HP  +EIY  +  L  + +EAGY  +++  + ++EE+E+E  L YHSE
Sbjct: 360 DRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSE 419

Query: 515 KLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSC 574
           KLA+AFGL+ T PG  +RIVKNLR+C DCH+A K IS  T REI+VRD  RFHHF  G C
Sbjct: 420 KLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMC 479

Query: 575 SCLDYW 580
           SC DYW
Sbjct: 480 SCNDYW 485


>gi|15240665|ref|NP_199850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171167|sp|Q9FK33.1|PP427_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g50390, chloroplastic; Flags: Precursor
 gi|9758921|dbj|BAB09458.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008555|gb|AED95938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/580 (35%), Positives = 341/580 (58%), Gaps = 12/580 (2%)

Query: 10  AYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
            Y+A+++A  RLK +   ++V+  ++  G+   + M+ ++L +    G I  A+R+F  I
Sbjct: 125 TYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEI 184

Query: 67  PSPDSFLFNTLIIRNSKANFST--DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNL 124
           P  + + + ++I  +   NF    ++   ++ M         +TF+ ++++ A L  + +
Sbjct: 185 PERNLYSYYSII--SGFVNFGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSIYV 242

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G+ +H      G   +  V   L++ Y+K  +++ AR  F+ MP+K+ VAWN++I+GY  
Sbjct: 243 GKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYAL 302

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           +G+++EA+ L   MRD GV+ D  T   ++    +L  ++L +  H  ++  G +  +V 
Sbjct: 303 HGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVA 362

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
            T+L++ Y++ G V  AR +FD +   N+I+W A++ GY  HG GT+AV+LF +M A  V
Sbjct: 363 NTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANV 422

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
            PN+VTF+AVLSACA++GL ++G  +F SM + +G+ P   H+ CM++L GR GLL+EA 
Sbjct: 423 APNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAI 482

Query: 365 KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
            F++     K    +W A+L AC+M +N +LG  VAE L  + PE  G+YV++ N+Y   
Sbjct: 483 AFIRRA-PLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSM 541

Query: 425 GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDK--SHPNT--NEIYQYLDEL 480
           G+      V   +  KGL      + VEV  + + F  GD+  S+  T   +IYQ +DEL
Sbjct: 542 GKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDEL 601

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMC 540
           M    E GY  E +  + +++E+E E   RYHSEKLA+A+GL+ T     ++I +N R+C
Sbjct: 602 MEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRIC 661

Query: 541 VDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            +CH  ++FIS+ T RE++VRD  RFHHFK G CSC  YW
Sbjct: 662 KNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 104/232 (44%), Gaps = 19/232 (8%)

Query: 189 KEAIGLFNLMR---DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLA 245
           +EA  LF ++     F V    +T   ++ AC +L  I   + V+ F++  G +    + 
Sbjct: 104 REAFELFEILEIRCSFKVGV--STYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMM 161

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
             ++ M+ +CG +  AR +FD + E N+ ++ ++ISG+   G   EA ELF  M      
Sbjct: 162 NRILLMHVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSD 221

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
               TF  +L A A  G +  G ++     +  G++        ++D++ + G + +A +
Sbjct: 222 CETHTFAVMLRASAGLGSIYVGKQLHVCALK-LGVVDNTFVSCGLIDMYSKCGDIEDA-R 279

Query: 366 FVKDVIGEKPAPAVWTAMLGA-----------CKMHKNFDLGVEVAEHLLSV 406
              + + EK   A W  ++             C ++   D GV + +  LS+
Sbjct: 280 CAFECMPEKTTVA-WNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSI 330


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/627 (35%), Positives = 342/627 (54%), Gaps = 60/627 (9%)

Query: 9   PA-YEAILKAGPR---LKPLQQVHAHLIVAGYGRSRS---MLTKLLSLVCDAGFITYAQR 61
           PA + ++L++  R   L   +++HA ++ +G   S     +L  L  L    G  + A+ 
Sbjct: 15  PARFRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARH 74

Query: 62  IFFCIPSPD------SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
           +F+ IP         + L  +L+   +K    ++   F++ M    +   +    +V   
Sbjct: 75  LFYQIPRSHKDVTDWTTLLTSLVQHGTKP---SEGFFFFKEMRKEGVVLDDVAMISVFVL 131

Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF----------- 164
           C  +  L +GR     +   G    + V  A++N Y K   V+  R+VF           
Sbjct: 132 CTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSW 191

Query: 165 --------------------DRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM-RDFGV 203
                               D MP+++ V W  MI+GY  NGF++E   L + M   F +
Sbjct: 192 STLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRL 251

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEF-IVGQGLDVNVVLATSLINMYARCGNVSKAR 262
             +  T   +L+ACAQ GD+ +GRWVH + + G G ++++++ T+L++MYA+CG +  A 
Sbjct: 252 GLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAF 311

Query: 263 EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           ++F  + + NV+AW AM+ G  MHG G   +++F +M     +P+++TF+AVLSAC+H+G
Sbjct: 312 KVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKM-IEEAKPDDLTFMAVLSACSHSG 370

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           LV +G+  F S+  EYG  P +EH+ CMVD+ GRAG L EA   +K  +   P   V  +
Sbjct: 371 LVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKK-MPMCPNEVVLGS 429

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442
           +LG+C  H    LG  + + L+ ++  N  ++V+LSN+Y L G+ D+   +R I+  KG+
Sbjct: 430 LLGSCNAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGI 489

Query: 443 KKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAM----- 497
           +K  G S++ V    + FS GDKSHP T EIY  L+ ++ R R AGYVP + + +     
Sbjct: 490 RKVPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSD 549

Query: 498 ----HELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVA 553
                  E EE+E +L  HSEKLA+ FG + T PG  + I KNLR+C DCHSAIK +S  
Sbjct: 550 GREGSSEEMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQDCHSAIKIVSKI 609

Query: 554 TNREIIVRDRLRFHHFKRGSCSCLDYW 580
            NREI++RDR RFH FK GSCSC DYW
Sbjct: 610 YNREIVIRDRNRFHCFKHGSCSCSDYW 636


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/553 (36%), Positives = 330/553 (59%), Gaps = 1/553 (0%)

Query: 28  HAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFS 87
           HA +I  G          L+++    G +  A+++F  +P      +NT++  +++    
Sbjct: 70  HAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDC 129

Query: 88  TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL 147
             +L+ + +M     S S +T S+V+ +CA    +   + +H     +  DS++ V  AL
Sbjct: 130 EKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTAL 189

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
           ++ YAK   V  A  VF+ MP++S V W+SM++GY QN   +EA+ LF+  +  G+  + 
Sbjct: 190 LDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQ 249

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
            T    L+ACA    +  G+ V       G+  N+ + +SLI+MYA+CG + +A  +F  
Sbjct: 250 FTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSS 309

Query: 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG 327
           + E NV+ W A++SG+  H    EA+  F +M+  G+ PN++T+++VLSAC+H GLV++G
Sbjct: 310 VEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKG 369

Query: 328 HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
            + F  M + + + P V H+ CMVD+ GRAGLL+EA  F+ D +      ++W ++L +C
Sbjct: 370 RKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFI-DRMPFDATASMWGSLLASC 428

Query: 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVG 447
           ++++N +L    A+HL  +EP N G++V+LSNIYA   R + V   RN++ +   KK  G
Sbjct: 429 RIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERG 488

Query: 448 YSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREY 507
            S +E+  K + F +G+++HP   EIY  L++L+G  ++ GY  ++E  +H++EE  ++ 
Sbjct: 489 KSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQE 548

Query: 508 SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFH 567
            LR+HSEKLAL FG+M    G  IRI+KNLR+C DCHS +K  S  T REIIVRD  RFH
Sbjct: 549 LLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFH 608

Query: 568 HFKRGSCSCLDYW 580
           HFK G CSC ++W
Sbjct: 609 HFKNGYCSCGEFW 621



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 163/314 (51%), Gaps = 7/314 (2%)

Query: 77  LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
           L I N+ A   +   L +  +  +++S   +   +  ++ A +     G A H  +   G
Sbjct: 22  LAISNAMAERPSSKELVWVGIRATHVSELQHLLQSSARNRAAIE----GMACHAQIIRVG 77

Query: 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN 196
             +D      L+N Y+K   V+ ARK+FD MP +S+V+WN+M+  + QNG  ++A+ LF 
Sbjct: 78  LRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFM 137

Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
            M+  G +    T   V+ ACA    +   + +H F +   LD NV + T+L+++YA+CG
Sbjct: 138 QMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCG 197

Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316
            V  A  +F+ M E + + W++M++GY  +    EA+ LFHR +A G+  N  T  + LS
Sbjct: 198 LVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALS 257

Query: 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376
           ACA    + EG +V A +  + G+   +     ++D++ + G++ EAY     V  E+  
Sbjct: 258 ACAARAALIEGKQVQA-VSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSV--EEKN 314

Query: 377 PAVWTAMLGACKMH 390
             +W A+L     H
Sbjct: 315 VVLWNAILSGFSRH 328



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 127/245 (51%), Gaps = 1/245 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H   +      +  + T LL +    G +  A  +F C+P      +++++    + 
Sbjct: 168 KQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQN 227

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++L+ + R     +  + +T S+ + +CA  + L  G+ V      +G  S++ V 
Sbjct: 228 ELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVI 287

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ++L++ YAK   ++ A  VF  + +K+VV WN+++SG+ ++  + EA+  F  M+  G+ 
Sbjct: 288 SSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGIC 347

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVG-QGLDVNVVLATSLINMYARCGNVSKARE 263
           P+  T + VL+AC+ LG ++ GR   + ++    +  NV+  + ++++  R G + +A++
Sbjct: 348 PNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKD 407

Query: 264 IFDMM 268
             D M
Sbjct: 408 FIDRM 412


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/553 (36%), Positives = 330/553 (59%), Gaps = 1/553 (0%)

Query: 28  HAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFS 87
           HA +I  G          L+++    G +  A+++F  +P      +NT++  +++    
Sbjct: 43  HAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDC 102

Query: 88  TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL 147
             +L+ + +M     S S +T S+V+ +CA    +   + +H     +  DS++ V  AL
Sbjct: 103 EKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTAL 162

Query: 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
           ++ YAK   V  A  VF+ MP++S V W+SM++GY QN   +EA+ LF+  +  G+  + 
Sbjct: 163 LDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQ 222

Query: 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267
            T    L+ACA    +  G+ V       G+  N+ + +SLI+MYA+CG + +A  +F  
Sbjct: 223 FTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSS 282

Query: 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG 327
           + E NV+ W A++SG+  H    EA+  F +M+  G+ PN++T+++VLSAC+H GLV++G
Sbjct: 283 VEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKG 342

Query: 328 HRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGAC 387
            + F  M + + + P V H+ CMVD+ GRAGLL+EA  F+ D +      ++W ++L +C
Sbjct: 343 RKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFI-DRMPFDATASMWGSLLASC 401

Query: 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVG 447
           ++++N +L    A+HL  +EP N G++V+LSNIYA   R + V   RN++ +   KK  G
Sbjct: 402 RIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERG 461

Query: 448 YSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREY 507
            S +E+  K + F +G+++HP   EIY  L++L+G  ++ GY  ++E  +H++EE  ++ 
Sbjct: 462 KSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQE 521

Query: 508 SLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFH 567
            LR+HSEKLAL FG+M    G  IRI+KNLR+C DCHS +K  S  T REIIVRD  RFH
Sbjct: 522 LLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFH 581

Query: 568 HFKRGSCSCLDYW 580
           HFK G CSC ++W
Sbjct: 582 HFKNGYCSCGEFW 594



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 144/266 (54%), Gaps = 3/266 (1%)

Query: 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ 184
           G A H  +   G  +D      L+N Y+K   V+ ARK+FD MP +S+V+WN+M+  + Q
Sbjct: 39  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 98

Query: 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVL 244
           NG  ++A+ LF  M+  G +    T   V+ ACA    +   + +H F +   LD NV +
Sbjct: 99  NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFV 158

Query: 245 ATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
            T+L+++YA+CG V  A  +F+ M E + + W++M++GY  +    EA+ LFHR +A G+
Sbjct: 159 GTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGL 218

Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364
             N  T  + LSACA    + EG +V A +  + G+   +     ++D++ + G++ EAY
Sbjct: 219 EHNQFTISSALSACAARAALIEGKQVQA-VSCKTGIGSNIFVISSLIDMYAKCGIIEEAY 277

Query: 365 KFVKDVIGEKPAPAVWTAMLGACKMH 390
                V  E+    +W A+L     H
Sbjct: 278 TVFSSV--EEKNVVLWNAILSGFSRH 301



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 127/245 (51%), Gaps = 1/245 (0%)

Query: 25  QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
           +Q+H   +      +  + T LL +    G +  A  +F C+P      +++++    + 
Sbjct: 141 KQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQN 200

Query: 85  NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
               ++L+ + R     +  + +T S+ + +CA  + L  G+ V      +G  S++ V 
Sbjct: 201 ELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVI 260

Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
           ++L++ YAK   ++ A  VF  + +K+VV WN+++SG+ ++  + EA+  F  M+  G+ 
Sbjct: 261 SSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGIC 320

Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVG-QGLDVNVVLATSLINMYARCGNVSKARE 263
           P+  T + VL+AC+ LG ++ GR   + ++    +  NV+  + ++++  R G + +A++
Sbjct: 321 PNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKD 380

Query: 264 IFDMM 268
             D M
Sbjct: 381 FIDRM 385


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/582 (35%), Positives = 335/582 (57%), Gaps = 16/582 (2%)

Query: 5   QPHSPAYEAILKA--GPR-LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
           +P S  Y  +LK+   PR L   +Q+HAH+I AG   + S+ T ++++    G++  A+R
Sbjct: 181 KPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKR 240

Query: 62  IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
           +F  +          L++  ++A  + D+L  +  ++   +   ++ FS V+K+CA L  
Sbjct: 241 VFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEE 300

Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
           LNLG+ +H  V   G +S++ V   LV+FY K ++ + A + F  + + + V+W+++ISG
Sbjct: 301 LNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISG 360

Query: 182 YEQNGFAKEAIGLFNLMRDFGVNP-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
           Y Q    +EA+  F  +R    +  +S T   +  AC+ L D ++G  VH   + + L  
Sbjct: 361 YCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIG 420

Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
           +    ++LI MY++CG +  A E+F+ M   +++AWTA ISG+  +G  +EA+ LF +M 
Sbjct: 421 SQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMV 480

Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
           + G++PN+VTF+AVL+AC+HAGLV++G     +M ++Y + P ++H+ CM+D++ R+GLL
Sbjct: 481 SCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLL 540

Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
           +EA KF+K++  E P    W   L  C  HKN +LG    E L  ++PE+   YV+  N+
Sbjct: 541 DEALKFMKNMPFE-PDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNL 599

Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
           Y  AG+ +    +  +M ++ LKK +  S ++   K + F +GDK HP T EIY+ L E 
Sbjct: 600 YTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLKEF 659

Query: 481 MGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRT--SPGMTIRIVKNLR 538
            G           E  M +    ER   L  HSE+LA+AFGL+    +    I++ KNLR
Sbjct: 660 DGF---------MEGDMFQCNMTERREQLLDHSERLAIAFGLISVHGNAPAPIKVFKNLR 710

Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
            C DCH   K +S+ T  EI++RD  RFHHFK G CSC DYW
Sbjct: 711 ACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 752



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 167/332 (50%), Gaps = 5/332 (1%)

Query: 75  NTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134
           N  ++  SK     ++  F + M  + +S S+Y++  + ++C  L  L+ GR +H  + +
Sbjct: 52  NLHLVSLSKHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRM 111

Query: 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL 194
              +  + +Q  ++  Y +  +++ A K+FD M + + V+  +MIS Y + G   +A+GL
Sbjct: 112 GIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGL 171

Query: 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
           F+ M   G  P S+    +L +      +D GR +H  ++  GL  N  + T ++NMY +
Sbjct: 172 FSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVK 231

Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
           CG +  A+ +FD M+    +A T ++ GY   G   +A++LF  +   GV  ++  F  V
Sbjct: 232 CGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVV 291

Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
           L ACA    +  G ++ A + +  GL   V     +VD + +      A +  +++   +
Sbjct: 292 LKACASLEELNLGKQIHACVAK-LGLESEVSVGTPLVDFYIKCSSFESACRAFQEI--RE 348

Query: 375 PAPAVWTAML-GACKMHKNFDLGVEVAEHLLS 405
           P    W+A++ G C+M + F+  V+  + L S
Sbjct: 349 PNDVSWSAIISGYCQMSQ-FEEAVKTFKSLRS 379


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/578 (36%), Positives = 326/578 (56%), Gaps = 16/578 (2%)

Query: 11  YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
           Y  ++K    LK L   +Q+H+ ++  G+    +++T ++      G +  A  IF  +P
Sbjct: 305 YSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMP 364

Query: 68  SPDSFLFNTLIIRNSKANFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
              + +  T +I     N     +   + RM   N+ P+ +T+S V+ +    SI  L  
Sbjct: 365 GSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTA----SIPILLP 420

Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
            +H  +  + Y     V  AL+  Y+K  N + A  +F  +  K VVAW++M+S Y Q G
Sbjct: 421 QIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAG 480

Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ-LGDIDLGRWVHEFIVGQGLDVNVVLA 245
               A  +F  M   G+ P+  T    + ACA     ID GR  H   +       + + 
Sbjct: 481 DCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVG 540

Query: 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305
           ++L+ MYAR G++  AR +F+  ++ ++++W +MISGY  HGY  EA++ F +M   G+ 
Sbjct: 541 SALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIE 600

Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
            +  TF+AV+  C HAGLV+EG + F SM  ++ + P +EH+ CMVDL+ RAG L+E   
Sbjct: 601 MDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMN 660

Query: 366 FVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
            ++ +    P PA   VW  +LGAC++HKN +LG   A+ LL +EP++   YV+LSNIYA
Sbjct: 661 LIEGM----PFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYA 716

Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
            AGR    + VR +M  K +KK  G S +++  K + F   DKSHP + +IY  L  +  
Sbjct: 717 AAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTT 776

Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
           R ++ GY P +   +H++ EE++E  L  HSE+LALAFGL+ T P   ++IVKNLR+C D
Sbjct: 777 RLKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLIATPPRTPLQIVKNLRVCGD 836

Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           CH  +K +S+  +REII+RD  RFHHF  G+CSC D+W
Sbjct: 837 CHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 149/288 (51%), Gaps = 3/288 (1%)

Query: 110 SAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLHVQAALVNFYAKSNNVDVARKVFDRMP 168
           S V+K C  +     G  +HC     G+D +++ V  ALV+ Y K   V+  R VF+ MP
Sbjct: 103 SRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMP 162

Query: 169 DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228
            ++VV W S+++GY Q     + + LF  MR  GV P+  T   VL+A A  G +DLGR 
Sbjct: 163 KRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRR 222

Query: 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288
           VH   V  G    V +  SLINMY++CG V +A+ +F  M   ++++W  +++G  ++ +
Sbjct: 223 VHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEH 282

Query: 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV 348
             EA++LFH  RA   + +  T+  V+  CA+   +    R   S   ++G         
Sbjct: 283 QLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALA-RQLHSCVLKHGFHSDGNVMT 341

Query: 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396
            ++D + + G L++A+     + G +   + WTAM+G C  + +  L 
Sbjct: 342 AIMDAYSKCGELDDAFNIFLLMPGSQNVVS-WTAMIGGCIQNADIPLA 388



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 190/402 (47%), Gaps = 10/402 (2%)

Query: 25  QQVHAHLIVAGYGRSR-SMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSK 83
           +Q+H   +  G+ R+   + T L+ +    G +   + +F  +P  +   + +L+    +
Sbjct: 119 EQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQ 178

Query: 84  ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV 143
               +D +  + RM    + P+ +TF++V+ + A    ++LGR VH      G  S + V
Sbjct: 179 GRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFV 238

Query: 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
             +L+N Y+K   V+ A+ VF +M  + +V+WN++++G   N    EA+ LF+  R    
Sbjct: 239 CNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMA 298

Query: 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263
               +T   V+  CA L  + L R +H  ++  G   +  + T++++ Y++CG +  A  
Sbjct: 299 KLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFN 358

Query: 264 IFDMM-SELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322
           IF +M    NV++WTAMI G   +     A  LF RMR   V+PN  T+  VL+A     
Sbjct: 359 IFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPIL 418

Query: 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382
           L Q   ++   ++  Y   P V     ++  + + G   EA    K +I  K   A W+A
Sbjct: 419 LPQIHAQI---IKTNYQHAPSV--GTALLASYSKLGNTEEALSIFK-MIDHKDVVA-WSA 471

Query: 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424
           ML       + D    V    +S++   P  + + S I A A
Sbjct: 472 MLSCYSQAGDCDGATNVFIK-MSMQGMKPNEFTISSAIDACA 512


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/583 (35%), Positives = 332/583 (56%), Gaps = 12/583 (2%)

Query: 6   PHSPAYEAILKAGPRLK-PL--QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
           P+   +  + KA   L+ P+  +Q+HA  +  G      +      + C       A+++
Sbjct: 106 PNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKL 165

Query: 63  FFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHL 119
           F  IP  +   +N  I   + + +   + ++ + +RR+      P++ TF   + +C+  
Sbjct: 166 FDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRI---GGQPNSITFCGFLNACSDG 222

Query: 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMI 179
            +L+LG  +H  VF SG+D+D+ V   L++FY K   +  +  +F  M  K+ V+W S++
Sbjct: 223 LLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLV 282

Query: 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239
           + Y QN   ++A  L+   R   V         VL+ACA +  ++LGR +H   V   ++
Sbjct: 283 AAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVE 342

Query: 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299
            N+ + ++L++MY +CG +  + + FD M E N++   ++I GY   G    A+ LF  M
Sbjct: 343 RNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDM 402

Query: 300 --RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357
             R  G  PN +TFV++LSAC+ AG V+ G ++F SM+  YG+ PG EH+ C+VD+ GRA
Sbjct: 403 APRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRA 462

Query: 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417
           G++ +A++F+K  +  KP  +VW A+  AC+MH    LG+  AE+L  ++P++ G++V+L
Sbjct: 463 GMVEQAFEFIKK-MPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPKDSGNHVLL 521

Query: 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYL 477
           SN +A AGR      VR  M   G+KK  GYS + V  + + F   D+SH    EI   L
Sbjct: 522 SNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKMNKEIQTML 581

Query: 478 DELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNL 537
            +L  +   AGY P+ + ++++LEEEE+   + +HSEKLALAFGL+     + IRI KNL
Sbjct: 582 TKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLVALPLSVPIRITKNL 641

Query: 538 RMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
           R+C DCHS  KF+S +  REIIVRD  RFH FK G CSC DYW
Sbjct: 642 RICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 4/247 (1%)

Query: 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA--LVNFYAKSNNVDVARKVFDRMPD 169
           ++K+    S + LGR VH  + V   DS      A  L+N Y+K ++ + AR V    P 
Sbjct: 12  LLKNAISTSSMRLGRVVHARI-VKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPA 70

Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229
           ++VV+W S++SG  QNG    A+  F  MR  GV P+  T  CV  A A L     G+ +
Sbjct: 71  RNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQI 130

Query: 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYG 289
           H   V  G  ++V +  S  +MY +      AR++FD + E N+  W A IS     G  
Sbjct: 131 HALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRP 190

Query: 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349
            EA+E F   R  G +PN++TF   L+AC+   L+  G ++   + +  G    V  +  
Sbjct: 191 KEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRS-GFDTDVSVYNG 249

Query: 350 MVDLFGR 356
           ++D +G+
Sbjct: 250 LIDFYGK 256


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/489 (41%), Positives = 291/489 (59%), Gaps = 33/489 (6%)

Query: 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-KSVVAWNSMISGY 182
           LG  VH     +G   DL+V+ AL +FY    +V   R VFD +P  + VV WN++++GY
Sbjct: 148 LGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGY 207

Query: 183 EQ--------------------------NGFAKE-----AIGLFNLMRDFGVNPDSTTCV 211
            +                           G+ KE     A+G+F  M + GV  +    V
Sbjct: 208 VRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVV 267

Query: 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL 271
             L+A AQ+G ++ GR+VHE +   G+ V+V +  +L++M+++CG V+ ARE+FD M   
Sbjct: 268 TALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRR 327

Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331
           +V AW AMI G   HG G +AVELF R    G+ P ++TFV VL+AC+  GLV EG R F
Sbjct: 328 DVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYF 387

Query: 332 ASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHK 391
             M  +Y + P +EH+ CMVDL GRAGL++EA + ++  +   P P +W  +L ACK H 
Sbjct: 388 KLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEG-MHIAPDPVLWGTVLSACKTHN 446

Query: 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTV 451
             DLG+ V   L+ +EP + GHYV+L++IYA A + D V  VR +M  +G  K  G+S +
Sbjct: 447 LVDLGITVGNKLIELEPAHDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLM 506

Query: 452 EVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRY 511
           E     + F +GD  H ++ +IY  LD +  R  +AGYVP+  S +H++ +EE+ ++++ 
Sbjct: 507 EAQGNLHKFLVGDMDHKDSVQIYNMLDMINRRLADAGYVPDVSSVLHDIGDEEKVHAIKV 566

Query: 512 HSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKR 571
           HSE+LA+A+G + T  G  IRIVKNL++C DCH   K ++   NREIIVRD  RFHH K 
Sbjct: 567 HSERLAIAYGFIVTEVGSPIRIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKE 626

Query: 572 GSCSCLDYW 580
           G CSCLDYW
Sbjct: 627 GKCSCLDYW 635


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,829,997,333
Number of Sequences: 23463169
Number of extensions: 356397129
Number of successful extensions: 1290243
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9469
Number of HSP's successfully gapped in prelim test: 2507
Number of HSP's that attempted gapping in prelim test: 1143658
Number of HSP's gapped (non-prelim): 50603
length of query: 580
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 432
effective length of database: 8,886,646,355
effective search space: 3839031225360
effective search space used: 3839031225360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 80 (35.4 bits)