BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046803
(580 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FD7|A Chain A, Crystal Structure Of Insect Putative Arylalkylamine N-
Acetyltransferase 7 From The Yellow Fever Mosquito Aedes
Aegypt
pdb|4FD7|B Chain B, Crystal Structure Of Insect Putative Arylalkylamine N-
Acetyltransferase 7 From The Yellow Fever Mosquito Aedes
Aegypt
pdb|4FD7|C Chain C, Crystal Structure Of Insect Putative Arylalkylamine N-
Acetyltransferase 7 From The Yellow Fever Mosquito Aedes
Aegypt
pdb|4FD7|D Chain D, Crystal Structure Of Insect Putative Arylalkylamine N-
Acetyltransferase 7 From The Yellow Fever Mosquito Aedes
Aegypt
Length = 238
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
H+C D F R L+N+A KD++ A+W AML
Sbjct: 46 RHMC--DYFARDELMNQAKGLAKDLVAMGDVVALWKAML 82
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex
Length = 1564
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGL-KKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
Y+ L NIY A D VE ++ K L KK + S V++ +++ M K HP E
Sbjct: 1314 YLRLKNIYVSAD--DFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKE 1371
Query: 473 I 473
I
Sbjct: 1372 I 1372
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form
At 3.1 Angstrom Resolution
pdb|3ZEF|E Chain E, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form
At 3.1 Angstrom Resolution
Length = 1531
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGL-KKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
Y+ L NIY A D VE ++ K L KK + S V++ +++ M K HP E
Sbjct: 1281 YLRLKNIYVSAD--DFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKE 1338
Query: 473 I 473
I
Sbjct: 1339 I 1339
>pdb|3SBG|A Chain A, Crystal Structure Of A Prp8 C-Terminal Fragment
Length = 565
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGL-KKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
Y+ L NIY A D VE ++ K L KK + S V++ +++ M K HP E
Sbjct: 331 YLRLKNIYVSAD--DFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKE 388
Query: 473 I 473
I
Sbjct: 389 I 389
>pdb|2OG4|A Chain A, Structure Of An Expanded Jab1-mpn-like Domain Of Splicing
Factor Prp8p From Yeast
Length = 254
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGL-KKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
Y+ L NIY A D VE ++ K L KK + S V++ +++ M K HP E
Sbjct: 20 YLRLKNIYVSAD--DFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKE 77
Query: 473 I 473
I
Sbjct: 78 I 78
>pdb|1Z01|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
Length = 446
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197
DSDL+ + A+ NFY D + V D S + W + S + + G AK G+
Sbjct: 363 DSDLYAREAMQNFYYDGTGWDDEQLV---ATDISPITWRKLASRWNR-GIAKPGRGVAGA 418
Query: 198 MRD 200
++D
Sbjct: 419 VKD 421
>pdb|3NPL|A Chain A, Structure Of Ru(Bpy)2(A-Phen)(K97c) P450 Bm3 Heme Domain,
A Ruthenium Modified P450 Bm3 Mutant
pdb|3NPL|B Chain B, Structure Of Ru(Bpy)2(A-Phen)(K97c) P450 Bm3 Heme Domain,
A Ruthenium Modified P450 Bm3 Mutant
Length = 470
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 360 LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419
L++A KFV+D G+ + WT CK H L ++ + G++ M+ +
Sbjct: 72 LSQALKFVRDFAGDGLFTS-WTHEKNWCKAHNI--LLPSFSQQAMK------GYHAMMVD 122
Query: 420 I-YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS--MGDKSHPNTNEIYQY 476
I L + +R+ +I + + + + + T+ + NY F+ D+ HP + +
Sbjct: 123 IAVQLVQKWERLNADEHIEVPEDMTR-LTLDTIGLSGFNYRFNSFYRDQPHPFITSMVRA 181
Query: 477 LDELMGRCREA 487
LDE M + + A
Sbjct: 182 LDEAMNKLQRA 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,213,717
Number of Sequences: 62578
Number of extensions: 621421
Number of successful extensions: 1793
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1792
Number of HSP's gapped (non-prelim): 58
length of query: 580
length of database: 14,973,337
effective HSP length: 104
effective length of query: 476
effective length of database: 8,465,225
effective search space: 4029447100
effective search space used: 4029447100
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)