Query 046803
Match_columns 580
No_of_seqs 745 out of 4269
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:37:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2E-120 3E-125 983.3 65.4 577 3-580 118-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2E-115 4E-120 965.7 64.8 573 2-578 282-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 2.4E-72 5.3E-77 622.0 41.7 564 2-573 80-677 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.7E-61 3.6E-66 526.0 55.1 439 6-447 435-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 8.7E-61 1.9E-65 520.3 51.9 523 7-558 369-911 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4.7E-60 1E-64 512.0 41.6 489 68-574 84-582 (697)
7 PF14432 DYW_deaminase: DYW fa 100.0 1.8E-31 3.8E-36 213.9 7.9 106 447-570 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-26 4.6E-31 260.0 47.6 395 39-442 464-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 4.1E-26 8.9E-31 257.7 48.8 414 17-439 477-899 (899)
10 KOG4626 O-linked N-acetylgluco 99.9 1.5E-22 3.3E-27 196.2 33.4 359 71-441 116-486 (966)
11 KOG4626 O-linked N-acetylgluco 99.9 2.8E-22 6.1E-27 194.5 30.1 378 42-430 118-509 (966)
12 TIGR00990 3a0801s09 mitochondr 99.9 2E-19 4.3E-24 192.6 42.2 358 75-440 131-571 (615)
13 PRK11788 tetratricopeptide rep 99.9 2.1E-20 4.5E-25 189.9 31.9 292 151-448 45-355 (389)
14 PRK11447 cellulose synthase su 99.9 1.3E-18 2.9E-23 198.3 49.1 377 52-439 281-739 (1157)
15 PRK11447 cellulose synthase su 99.9 3.4E-19 7.5E-24 203.0 43.6 437 40-493 235-747 (1157)
16 PRK11788 tetratricopeptide rep 99.9 3.2E-19 6.9E-24 181.3 34.1 282 119-405 48-346 (389)
17 PRK15174 Vi polysaccharide exp 99.9 3.3E-18 7.2E-23 182.6 42.5 367 52-439 17-402 (656)
18 PRK15174 Vi polysaccharide exp 99.9 7.3E-18 1.6E-22 180.0 39.0 326 108-442 44-383 (656)
19 PRK10049 pgaA outer membrane p 99.9 1.9E-17 4E-22 180.7 42.2 396 39-441 14-457 (765)
20 TIGR00990 3a0801s09 mitochondr 99.8 2.7E-17 6E-22 176.1 41.5 352 49-410 136-575 (615)
21 PRK10049 pgaA outer membrane p 99.8 2.8E-16 6.2E-21 171.4 46.9 396 11-414 21-464 (765)
22 PRK09782 bacteriophage N4 rece 99.8 6.6E-16 1.4E-20 168.8 46.5 421 5-441 108-707 (987)
23 PRK14574 hmsH outer membrane p 99.8 2.2E-15 4.8E-20 161.5 44.1 387 49-441 43-514 (822)
24 PRK09782 bacteriophage N4 rece 99.8 5.4E-15 1.2E-19 161.7 45.8 406 22-443 164-743 (987)
25 PRK14574 hmsH outer membrane p 99.7 4.8E-14 1E-18 151.3 41.3 356 78-440 41-479 (822)
26 KOG2002 TPR-containing nuclear 99.7 5.2E-13 1.1E-17 137.5 34.8 113 39-154 269-389 (1018)
27 KOG0495 HAT repeat protein [RN 99.7 5.6E-12 1.2E-16 124.4 40.3 411 20-441 391-847 (913)
28 KOG4422 Uncharacterized conser 99.6 9E-12 1.9E-16 117.2 37.4 289 10-303 118-463 (625)
29 PF13429 TPR_15: Tetratricopep 99.6 6.9E-16 1.5E-20 148.7 10.1 258 177-439 13-276 (280)
30 KOG2003 TPR repeat-containing 99.6 1.5E-12 3.3E-17 123.0 31.3 202 221-426 504-709 (840)
31 KOG2002 TPR-containing nuclear 99.6 3.8E-12 8.3E-17 131.3 34.7 382 55-442 251-677 (1018)
32 KOG2076 RNA polymerase III tra 99.6 5.9E-12 1.3E-16 129.1 34.8 329 118-450 151-522 (895)
33 PRK10747 putative protoheme IX 99.6 2.5E-12 5.4E-17 129.8 31.2 276 154-439 97-389 (398)
34 KOG1915 Cell cycle control pro 99.6 2E-11 4.2E-16 116.3 34.4 387 55-450 88-510 (677)
35 KOG1126 DNA-binding cell divis 99.6 3.4E-13 7.4E-18 133.9 22.0 244 188-439 335-585 (638)
36 KOG1126 DNA-binding cell divis 99.6 5.7E-13 1.2E-17 132.3 23.4 276 156-441 334-621 (638)
37 PRK10747 putative protoheme IX 99.6 4.8E-12 1E-16 127.7 30.5 221 180-407 161-391 (398)
38 KOG0547 Translocase of outer m 99.6 1.5E-11 3.3E-16 117.6 30.0 356 74-439 118-565 (606)
39 TIGR00540 hemY_coli hemY prote 99.5 2.5E-11 5.4E-16 123.2 33.8 280 119-403 97-396 (409)
40 KOG0495 HAT repeat protein [RN 99.5 5.1E-10 1.1E-14 110.9 40.3 386 39-440 379-782 (913)
41 KOG1155 Anaphase-promoting com 99.5 8.1E-11 1.8E-15 112.1 33.2 254 180-439 235-494 (559)
42 TIGR00540 hemY_coli hemY prote 99.5 1.9E-11 4.2E-16 124.0 30.3 282 151-439 94-398 (409)
43 PF13429 TPR_15: Tetratricopep 99.5 1E-13 2.2E-18 133.6 12.9 256 76-335 13-275 (280)
44 KOG1155 Anaphase-promoting com 99.5 2E-10 4.4E-15 109.4 33.0 247 115-370 236-492 (559)
45 KOG1915 Cell cycle control pro 99.5 1.8E-09 3.9E-14 103.3 37.3 409 22-441 90-537 (677)
46 KOG4422 Uncharacterized conser 99.5 3.8E-10 8.2E-15 106.4 31.5 350 37-407 204-591 (625)
47 TIGR02521 type_IV_pilW type IV 99.5 2.2E-11 4.7E-16 113.9 23.6 200 239-439 28-231 (234)
48 KOG1173 Anaphase-promoting com 99.5 3.4E-10 7.5E-15 110.6 31.7 387 46-439 55-517 (611)
49 COG2956 Predicted N-acetylgluc 99.5 2.3E-10 5E-15 104.3 28.3 315 84-464 48-371 (389)
50 KOG2076 RNA polymerase III tra 99.4 5.6E-10 1.2E-14 114.8 33.3 353 85-440 153-555 (895)
51 COG2956 Predicted N-acetylgluc 99.4 4E-10 8.7E-15 102.7 27.8 211 52-268 47-275 (389)
52 KOG2003 TPR repeat-containing 99.4 1.2E-10 2.6E-15 110.4 24.2 184 254-440 502-689 (840)
53 KOG1840 Kinesin light chain [C 99.4 1.7E-10 3.6E-15 116.2 26.6 232 208-439 200-478 (508)
54 COG3071 HemY Uncharacterized e 99.4 1.5E-09 3.3E-14 102.1 30.1 287 84-405 97-389 (400)
55 COG3071 HemY Uncharacterized e 99.4 1.6E-09 3.4E-14 102.0 29.2 279 154-440 97-390 (400)
56 PRK12370 invasion protein regu 99.4 4E-10 8.8E-15 118.8 26.8 261 171-441 255-536 (553)
57 KOG0547 Translocase of outer m 99.3 2.8E-09 6E-14 102.5 29.0 220 181-407 335-567 (606)
58 KOG1173 Anaphase-promoting com 99.3 1.6E-09 3.5E-14 106.0 27.8 279 137-419 240-531 (611)
59 KOG4318 Bicoid mRNA stability 99.3 5E-11 1.1E-15 121.8 17.7 269 193-502 11-280 (1088)
60 PF13041 PPR_2: PPR repeat fam 99.3 3.3E-12 7.2E-17 86.7 5.9 50 69-118 1-50 (50)
61 KOG4162 Predicted calmodulin-b 99.3 1.3E-08 2.9E-13 103.2 32.8 399 36-441 319-784 (799)
62 TIGR02521 type_IV_pilW type IV 99.3 1.7E-09 3.7E-14 101.0 24.5 200 172-406 31-232 (234)
63 KOG1129 TPR repeat-containing 99.3 3E-10 6.5E-15 103.5 18.1 228 176-441 227-459 (478)
64 KOG1174 Anaphase-promoting com 99.3 7.9E-09 1.7E-13 97.3 27.3 302 104-411 192-505 (564)
65 PF13041 PPR_2: PPR repeat fam 99.3 1.5E-11 3.3E-16 83.5 6.6 50 271-320 1-50 (50)
66 KOG4318 Bicoid mRNA stability 99.2 2.7E-09 5.8E-14 109.4 23.3 335 69-433 23-401 (1088)
67 PRK12370 invasion protein regu 99.2 2E-09 4.3E-14 113.6 23.5 227 206-440 255-502 (553)
68 PRK11189 lipoprotein NlpI; Pro 99.2 1E-08 2.2E-13 99.1 25.7 227 186-420 40-280 (296)
69 KOG1840 Kinesin light chain [C 99.2 4.1E-09 8.9E-14 106.2 23.4 232 174-405 201-478 (508)
70 KOG1129 TPR repeat-containing 99.2 1.3E-09 2.9E-14 99.4 17.0 197 241-441 222-425 (478)
71 KOG1174 Anaphase-promoting com 99.2 6.7E-07 1.4E-11 84.7 35.0 282 170-485 230-519 (564)
72 KOG1125 TPR repeat-containing 99.2 2.5E-09 5.3E-14 105.2 19.5 220 218-440 296-527 (579)
73 KOG1156 N-terminal acetyltrans 99.2 4.3E-07 9.4E-12 90.8 34.5 384 50-442 51-470 (700)
74 KOG2376 Signal recognition par 99.1 2.9E-06 6.3E-11 84.1 38.9 395 22-436 29-516 (652)
75 PRK11189 lipoprotein NlpI; Pro 99.1 1.7E-08 3.7E-13 97.5 21.8 213 221-442 40-267 (296)
76 COG3063 PilF Tfp pilus assembl 99.1 1.4E-08 3.1E-13 88.7 18.8 163 275-442 37-204 (250)
77 PF12569 NARP1: NMDA receptor- 99.1 7.7E-08 1.7E-12 98.3 26.4 149 291-442 129-293 (517)
78 KOG0548 Molecular co-chaperone 99.1 2.5E-07 5.4E-12 90.7 27.5 375 43-441 9-456 (539)
79 KOG2047 mRNA splicing factor [ 99.0 7.8E-06 1.7E-10 81.9 37.3 214 221-437 361-612 (835)
80 PF04733 Coatomer_E: Coatomer 99.0 4.2E-08 9.2E-13 93.5 19.2 249 151-411 11-270 (290)
81 PF12569 NARP1: NMDA receptor- 99.0 1.1E-06 2.4E-11 90.0 29.8 283 150-439 13-333 (517)
82 COG3063 PilF Tfp pilus assembl 99.0 2.2E-07 4.7E-12 81.5 20.8 193 245-439 38-235 (250)
83 KOG0624 dsRNA-activated protei 99.0 1.5E-06 3.2E-11 80.4 27.0 313 70-411 37-375 (504)
84 KOG2047 mRNA splicing factor [ 99.0 1E-05 2.3E-10 81.0 34.7 160 272-435 348-535 (835)
85 cd05804 StaR_like StaR_like; a 98.9 3.9E-06 8.4E-11 84.1 30.8 257 181-441 52-337 (355)
86 KOG4162 Predicted calmodulin-b 98.9 3.2E-05 6.8E-10 79.4 36.4 305 136-441 318-750 (799)
87 KOG3785 Uncharacterized conser 98.9 1.7E-05 3.8E-10 73.8 31.1 289 146-442 156-492 (557)
88 PF04733 Coatomer_E: Coatomer 98.9 1.3E-07 2.8E-12 90.2 17.9 246 180-439 9-264 (290)
89 KOG1070 rRNA processing protei 98.9 4E-07 8.7E-12 98.1 21.9 201 239-443 1455-1666(1710)
90 cd05804 StaR_like StaR_like; a 98.8 1.9E-05 4.2E-10 79.1 33.0 197 71-269 6-213 (355)
91 KOG4340 Uncharacterized conser 98.8 3.5E-06 7.5E-11 76.5 23.7 372 52-439 22-442 (459)
92 PRK04841 transcriptional regul 98.8 2.8E-05 6E-10 88.4 37.5 15 22-36 292-306 (903)
93 PRK10370 formate-dependent nit 98.8 5.6E-07 1.2E-11 81.0 19.1 148 280-441 23-174 (198)
94 PRK04841 transcriptional regul 98.8 6.7E-06 1.5E-10 93.3 32.0 324 118-441 386-761 (903)
95 PLN02789 farnesyltranstransfer 98.8 2.8E-06 6.1E-11 82.1 24.4 213 222-438 52-300 (320)
96 KOG1156 N-terminal acetyltrans 98.8 3.7E-05 8E-10 77.4 32.0 354 81-443 51-437 (700)
97 KOG2376 Signal recognition par 98.8 1.9E-05 4.2E-10 78.5 29.7 383 78-482 19-486 (652)
98 TIGR03302 OM_YfiO outer membra 98.8 8.9E-07 1.9E-11 82.9 19.9 181 241-440 32-232 (235)
99 PRK15359 type III secretion sy 98.8 3.3E-07 7.2E-12 78.0 14.7 122 294-422 14-137 (144)
100 KOG1125 TPR repeat-containing 98.7 7.8E-07 1.7E-11 88.0 18.1 248 180-432 293-563 (579)
101 KOG0624 dsRNA-activated protei 98.7 5.7E-05 1.2E-09 70.2 28.3 309 40-376 42-373 (504)
102 KOG0548 Molecular co-chaperone 98.7 1.2E-05 2.6E-10 79.1 25.4 346 79-440 10-421 (539)
103 PRK15359 type III secretion sy 98.7 4.2E-07 9E-12 77.4 13.8 108 329-441 14-122 (144)
104 KOG3617 WD40 and TPR repeat-co 98.7 5E-05 1.1E-09 78.2 30.1 356 39-435 725-1169(1416)
105 KOG3785 Uncharacterized conser 98.7 7.6E-05 1.6E-09 69.7 28.8 370 52-437 34-454 (557)
106 KOG1128 Uncharacterized conser 98.7 9.4E-07 2E-11 89.7 17.7 191 237-442 393-584 (777)
107 KOG1127 TPR repeat-containing 98.7 8.1E-06 1.7E-10 85.6 24.6 395 25-436 476-909 (1238)
108 PRK15179 Vi polysaccharide bio 98.7 3E-06 6.6E-11 90.2 21.3 140 271-415 84-226 (694)
109 KOG0985 Vesicle coat protein c 98.6 0.00012 2.7E-09 77.0 31.7 214 155-389 1089-1325(1666)
110 PRK15363 pathogenicity island 98.6 1.1E-06 2.4E-11 73.6 13.5 119 344-485 35-154 (157)
111 PRK10370 formate-dependent nit 98.6 6.1E-06 1.3E-10 74.3 18.6 154 249-414 23-181 (198)
112 TIGR03302 OM_YfiO outer membra 98.6 5.5E-06 1.2E-10 77.6 18.9 181 206-408 32-234 (235)
113 COG5010 TadD Flp pilus assembl 98.6 9.3E-06 2E-10 73.0 18.4 156 277-435 70-226 (257)
114 KOG3616 Selective LIM binding 98.6 3.5E-05 7.6E-10 78.2 24.4 101 185-296 745-847 (1636)
115 KOG1070 rRNA processing protei 98.6 1.8E-05 3.9E-10 85.9 23.6 233 204-437 1454-1697(1710)
116 KOG4340 Uncharacterized conser 98.5 8.8E-06 1.9E-10 74.0 17.8 306 107-436 11-335 (459)
117 PF12854 PPR_1: PPR repeat 98.5 1.1E-07 2.5E-12 57.8 4.1 33 136-168 2-34 (34)
118 PF12854 PPR_1: PPR repeat 98.5 1.3E-07 2.9E-12 57.5 4.1 33 237-269 2-34 (34)
119 KOG1128 Uncharacterized conser 98.5 2.1E-05 4.5E-10 80.2 21.7 217 137-371 394-614 (777)
120 COG4783 Putative Zn-dependent 98.5 4.8E-05 1E-09 74.4 22.6 119 318-438 316-435 (484)
121 KOG0985 Vesicle coat protein c 98.5 0.00028 6.2E-09 74.4 29.1 335 73-436 840-1245(1666)
122 KOG1127 TPR repeat-containing 98.5 5.6E-05 1.2E-09 79.6 24.1 346 87-441 474-880 (1238)
123 PLN02789 farnesyltranstransfer 98.5 0.00011 2.3E-09 71.3 24.9 228 175-409 40-305 (320)
124 COG5010 TadD Flp pilus assembl 98.5 1.5E-05 3.1E-10 71.8 17.2 136 304-441 62-198 (257)
125 TIGR02552 LcrH_SycD type III s 98.4 3.4E-06 7.5E-11 71.2 12.0 101 340-440 12-114 (135)
126 KOG3616 Selective LIM binding 98.4 0.0001 2.2E-09 75.0 23.1 164 252-437 742-908 (1636)
127 KOG3081 Vesicle coat complex C 98.4 0.00036 7.7E-09 63.0 23.8 248 153-411 20-276 (299)
128 PRK15179 Vi polysaccharide bio 98.4 5.1E-05 1.1E-09 81.0 22.0 143 238-384 82-229 (694)
129 PRK14720 transcript cleavage f 98.4 0.00031 6.8E-09 75.9 27.0 234 108-388 33-268 (906)
130 PRK14720 transcript cleavage f 98.4 0.00011 2.4E-09 79.3 23.5 150 242-422 116-268 (906)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.3E-05 5.1E-10 77.3 16.6 125 309-438 170-295 (395)
132 KOG3617 WD40 and TPR repeat-co 98.3 8.3E-05 1.8E-09 76.6 20.1 259 139-438 724-994 (1416)
133 KOG3060 Uncharacterized conser 98.3 0.00031 6.8E-09 62.9 20.3 167 246-415 56-229 (289)
134 TIGR00756 PPR pentatricopeptid 98.2 1.6E-06 3.4E-11 53.6 3.9 35 72-106 1-35 (35)
135 TIGR02552 LcrH_SycD type III s 98.2 4.6E-05 1E-09 64.3 14.2 114 295-412 5-120 (135)
136 COG4783 Putative Zn-dependent 98.2 0.0009 1.9E-08 65.7 24.2 133 153-302 318-454 (484)
137 KOG1914 mRNA cleavage and poly 98.2 0.0087 1.9E-07 59.6 33.8 396 38-440 18-501 (656)
138 TIGR00756 PPR pentatricopeptid 98.2 2.9E-06 6.4E-11 52.3 4.3 35 173-207 1-35 (35)
139 PF09976 TPR_21: Tetratricopep 98.2 8.8E-05 1.9E-09 63.4 14.5 117 320-437 23-144 (145)
140 cd00189 TPR Tetratricopeptide 98.2 2.7E-05 5.8E-10 60.5 10.7 94 347-440 3-97 (100)
141 KOG2053 Mitochondrial inherita 98.2 0.017 3.7E-07 61.1 34.3 379 51-444 54-506 (932)
142 PLN03088 SGT1, suppressor of 98.1 4.3E-05 9.3E-10 75.8 13.6 98 317-416 11-109 (356)
143 PF13812 PPR_3: Pentatricopept 98.1 4.5E-06 9.7E-11 51.1 3.9 34 71-104 1-34 (34)
144 KOG3060 Uncharacterized conser 98.1 0.00044 9.4E-09 62.0 17.3 184 255-442 25-222 (289)
145 TIGR02795 tol_pal_ybgF tol-pal 98.1 7E-05 1.5E-09 61.4 11.6 91 349-439 7-104 (119)
146 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00012 2.7E-09 59.9 12.9 105 310-414 4-113 (119)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00014 3E-09 72.0 15.0 124 144-269 172-295 (395)
148 KOG3081 Vesicle coat complex C 98.0 0.002 4.4E-08 58.3 20.1 243 180-438 16-269 (299)
149 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.6E-10 49.2 4.4 33 173-205 2-34 (34)
150 KOG0553 TPR repeat-containing 98.0 5.4E-05 1.2E-09 69.6 10.0 91 318-411 91-183 (304)
151 PRK02603 photosystem I assembl 98.0 0.00011 2.3E-09 65.0 11.7 83 344-426 35-121 (172)
152 PF12895 Apc3: Anaphase-promot 98.0 7.9E-06 1.7E-10 62.4 3.7 79 357-436 2-83 (84)
153 KOG0550 Molecular chaperone (D 97.9 0.00037 8.1E-09 66.7 15.4 265 149-441 57-351 (486)
154 PF13432 TPR_16: Tetratricopep 97.9 4.8E-05 1E-09 54.7 7.0 60 351-410 4-64 (65)
155 PLN03088 SGT1, suppressor of 97.9 0.00022 4.7E-09 70.8 14.0 103 279-385 8-111 (356)
156 COG4235 Cytochrome c biogenesi 97.9 0.0002 4.4E-09 66.3 12.6 102 342-443 154-259 (287)
157 CHL00033 ycf3 photosystem I as 97.9 0.00014 3E-09 64.0 11.1 95 343-437 34-139 (168)
158 PRK02603 photosystem I assembl 97.9 0.00043 9.4E-09 61.1 14.2 128 274-426 36-166 (172)
159 PF13414 TPR_11: TPR repeat; P 97.9 3.4E-05 7.3E-10 56.3 5.9 64 376-439 2-66 (69)
160 PF09976 TPR_21: Tetratricopep 97.9 0.00086 1.9E-08 57.2 15.5 125 276-403 15-144 (145)
161 PRK10153 DNA-binding transcrip 97.9 0.00076 1.7E-08 69.9 17.6 140 271-412 335-488 (517)
162 KOG0553 TPR repeat-containing 97.9 0.00018 3.9E-09 66.2 11.2 97 280-381 88-186 (304)
163 PF01535 PPR: PPR repeat; Int 97.9 1.8E-05 3.9E-10 47.2 3.3 31 72-102 1-31 (31)
164 PRK15331 chaperone protein Sic 97.8 0.00054 1.2E-08 57.9 13.0 90 350-439 43-133 (165)
165 KOG1914 mRNA cleavage and poly 97.8 0.046 1E-06 54.7 33.9 427 7-437 19-536 (656)
166 cd00189 TPR Tetratricopeptide 97.8 0.00033 7.2E-09 54.2 11.0 92 315-408 7-99 (100)
167 COG4700 Uncharacterized protei 97.8 0.0027 5.8E-08 54.2 16.0 133 304-439 85-221 (251)
168 PF05843 Suf: Suppressor of fo 97.8 0.0011 2.4E-08 63.4 16.0 135 274-411 2-141 (280)
169 PF01535 PPR: PPR repeat; Int 97.7 3.8E-05 8.2E-10 45.7 3.4 31 173-203 1-31 (31)
170 PF13414 TPR_11: TPR repeat; P 97.7 9E-05 2E-09 54.0 6.1 66 343-408 2-69 (69)
171 KOG1130 Predicted G-alpha GTPa 97.7 0.00045 9.7E-09 66.0 12.0 130 310-439 197-343 (639)
172 PF13432 TPR_16: Tetratricopep 97.7 8.8E-05 1.9E-09 53.3 5.8 59 383-441 3-61 (65)
173 PF14559 TPR_19: Tetratricopep 97.6 6.6E-05 1.4E-09 54.6 3.8 54 357-410 4-58 (68)
174 PF14559 TPR_19: Tetratricopep 97.6 0.00017 3.7E-09 52.3 5.5 53 388-440 2-54 (68)
175 PF12895 Apc3: Anaphase-promot 97.5 0.00033 7.1E-09 53.4 6.9 78 286-367 2-81 (84)
176 CHL00033 ycf3 photosystem I as 97.5 0.0028 6E-08 55.7 12.9 96 314-409 41-152 (168)
177 PF04840 Vps16_C: Vps16, C-ter 97.5 0.12 2.6E-06 50.1 26.5 102 249-367 184-285 (319)
178 PF14938 SNAP: Soluble NSF att 97.5 0.035 7.6E-07 53.3 21.4 128 249-388 101-246 (282)
179 PF13371 TPR_9: Tetratricopept 97.4 0.00044 9.5E-09 51.0 6.3 56 385-440 3-58 (73)
180 PRK15363 pathogenicity island 97.4 0.009 2E-07 50.4 13.7 97 245-342 38-137 (157)
181 PRK10803 tol-pal system protei 97.3 0.0018 3.8E-08 60.9 10.4 96 345-440 144-246 (263)
182 PRK10153 DNA-binding transcrip 97.3 0.0082 1.8E-07 62.4 16.2 136 303-442 332-484 (517)
183 PF13371 TPR_9: Tetratricopept 97.3 0.00078 1.7E-08 49.6 6.5 64 352-415 3-67 (73)
184 KOG0550 Molecular chaperone (D 97.3 0.1 2.2E-06 50.6 21.7 166 207-376 168-353 (486)
185 PF14938 SNAP: Soluble NSF att 97.3 0.025 5.5E-07 54.3 18.2 117 279-410 100-229 (282)
186 PF12688 TPR_5: Tetratrico pep 97.3 0.0038 8.2E-08 50.7 10.5 88 350-437 7-101 (120)
187 COG3898 Uncharacterized membra 97.3 0.19 4.2E-06 48.4 27.1 251 185-450 133-400 (531)
188 PF12688 TPR_5: Tetratrico pep 97.3 0.011 2.4E-07 47.9 12.9 107 177-284 6-117 (120)
189 PF06239 ECSIT: Evolutionarily 97.2 0.011 2.3E-07 52.4 13.3 105 204-323 44-153 (228)
190 PF08579 RPM2: Mitochondrial r 97.2 0.005 1.1E-07 48.2 9.8 81 174-254 27-116 (120)
191 PF08579 RPM2: Mitochondrial r 97.2 0.0059 1.3E-07 47.8 10.2 81 73-153 27-116 (120)
192 PF05843 Suf: Suppressor of fo 97.2 0.0041 8.8E-08 59.5 11.6 130 309-440 2-136 (280)
193 KOG2041 WD40 repeat protein [G 97.2 0.38 8.1E-06 49.9 25.6 131 55-198 678-822 (1189)
194 PF13431 TPR_17: Tetratricopep 97.2 0.00027 5.8E-09 42.9 2.1 33 400-432 2-34 (34)
195 KOG2053 Mitochondrial inherita 97.2 0.46 1E-05 50.8 41.4 163 39-202 76-256 (932)
196 KOG1130 Predicted G-alpha GTPa 97.2 0.0027 5.9E-08 60.9 9.7 255 80-335 26-342 (639)
197 PRK10866 outer membrane biogen 97.2 0.083 1.8E-06 49.3 19.7 57 382-438 180-239 (243)
198 COG4700 Uncharacterized protei 97.1 0.078 1.7E-06 45.6 16.9 134 271-404 87-220 (251)
199 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0024 5.3E-08 63.0 8.7 98 343-443 74-177 (453)
200 PRK10866 outer membrane biogen 97.1 0.26 5.7E-06 45.9 21.9 63 172-236 32-98 (243)
201 PF10037 MRP-S27: Mitochondria 97.0 0.0058 1.3E-07 60.9 11.2 116 140-255 65-186 (429)
202 PF10037 MRP-S27: Mitochondria 97.0 0.012 2.6E-07 58.8 13.2 120 101-220 61-186 (429)
203 PRK10803 tol-pal system protei 97.0 0.012 2.6E-07 55.3 12.4 102 310-411 145-251 (263)
204 PF07079 DUF1347: Protein of u 96.9 0.47 1E-05 46.8 29.8 59 378-437 461-521 (549)
205 PF13428 TPR_14: Tetratricopep 96.9 0.0012 2.6E-08 42.9 3.7 42 378-419 2-43 (44)
206 KOG1538 Uncharacterized conser 96.9 0.047 1E-06 55.7 16.2 195 188-404 616-844 (1081)
207 KOG2041 WD40 repeat protein [G 96.9 0.41 8.8E-06 49.6 22.7 61 344-404 1021-1084(1189)
208 KOG2796 Uncharacterized conser 96.9 0.077 1.7E-06 48.2 15.8 135 276-410 180-319 (366)
209 COG4235 Cytochrome c biogenesi 96.9 0.048 1E-06 50.9 14.8 104 306-411 154-261 (287)
210 PF13281 DUF4071: Domain of un 96.8 0.2 4.3E-06 49.1 19.4 161 247-410 146-338 (374)
211 KOG4555 TPR repeat-containing 96.8 0.013 2.9E-07 46.9 9.0 91 352-442 51-146 (175)
212 PF04840 Vps16_C: Vps16, C-ter 96.8 0.57 1.2E-05 45.5 24.4 111 309-437 178-288 (319)
213 PF06239 ECSIT: Evolutionarily 96.8 0.011 2.3E-07 52.4 9.2 98 59-156 33-153 (228)
214 KOG2280 Vacuolar assembly/sort 96.8 0.48 1E-05 49.6 22.1 302 46-367 443-793 (829)
215 COG0457 NrfG FOG: TPR repeat [ 96.8 0.43 9.3E-06 43.6 28.0 197 242-440 59-265 (291)
216 KOG2796 Uncharacterized conser 96.7 0.11 2.3E-06 47.3 15.3 165 144-310 139-321 (366)
217 COG3898 Uncharacterized membra 96.7 0.63 1.4E-05 45.0 28.8 302 55-371 68-390 (531)
218 PF13424 TPR_12: Tetratricopep 96.7 0.0033 7.2E-08 46.9 4.9 26 346-371 7-32 (78)
219 KOG0543 FKBP-type peptidyl-pro 96.7 0.018 3.8E-07 55.8 10.7 63 378-440 258-320 (397)
220 PF13525 YfiO: Outer membrane 96.7 0.4 8.7E-06 43.4 19.3 59 178-236 11-71 (203)
221 PF13525 YfiO: Outer membrane 96.6 0.37 7.9E-06 43.7 18.7 142 278-440 10-170 (203)
222 KOG0543 FKBP-type peptidyl-pro 96.6 0.026 5.7E-07 54.6 11.4 140 279-440 214-355 (397)
223 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.015 3.2E-07 57.7 9.9 64 307-373 74-141 (453)
224 KOG2280 Vacuolar assembly/sort 96.5 1.4 3E-05 46.4 24.0 316 101-435 427-794 (829)
225 PF13424 TPR_12: Tetratricopep 96.5 0.0042 9.1E-08 46.4 4.3 63 377-439 5-74 (78)
226 PRK11906 transcriptional regul 96.5 0.068 1.5E-06 53.2 13.5 78 361-438 321-399 (458)
227 PF03704 BTAD: Bacterial trans 96.4 0.075 1.6E-06 45.2 12.2 62 378-439 63-124 (146)
228 KOG1258 mRNA processing protei 96.4 1.5 3.2E-05 45.1 32.3 379 40-426 45-490 (577)
229 PF09205 DUF1955: Domain of un 96.3 0.31 6.7E-06 39.5 13.7 140 284-443 13-152 (161)
230 KOG1538 Uncharacterized conser 96.2 0.47 1E-05 48.8 18.0 95 262-368 736-841 (1081)
231 PRK11906 transcriptional regul 96.2 0.29 6.3E-06 48.9 16.1 158 274-435 252-431 (458)
232 KOG1941 Acetylcholine receptor 96.2 0.1 2.2E-06 49.7 12.2 46 183-228 17-64 (518)
233 COG0457 NrfG FOG: TPR repeat [ 96.1 1.1 2.4E-05 40.7 27.3 198 208-409 60-268 (291)
234 PF12921 ATP13: Mitochondrial 96.0 0.13 2.9E-06 42.2 10.8 49 304-352 48-96 (126)
235 COG4785 NlpI Lipoprotein NlpI, 95.9 0.076 1.6E-06 46.8 9.6 154 282-441 74-267 (297)
236 KOG1585 Protein required for f 95.9 1.2 2.6E-05 40.4 16.9 86 349-435 155-251 (308)
237 PF13512 TPR_18: Tetratricopep 95.8 0.29 6.3E-06 40.7 12.0 58 354-411 20-81 (142)
238 PF13281 DUF4071: Domain of un 95.7 0.97 2.1E-05 44.5 17.3 73 146-218 146-228 (374)
239 PF13512 TPR_18: Tetratricopep 95.6 0.42 9E-06 39.8 12.3 92 319-410 21-132 (142)
240 PF03704 BTAD: Bacterial trans 95.6 0.32 6.9E-06 41.4 12.4 59 346-404 64-123 (146)
241 COG1729 Uncharacterized protei 95.5 0.2 4.4E-06 46.2 11.3 94 346-440 144-244 (262)
242 PF12921 ATP13: Mitochondrial 95.4 0.21 4.6E-06 41.0 10.1 51 339-389 47-100 (126)
243 COG4105 ComL DNA uptake lipopr 95.4 1.5 3.3E-05 40.2 16.3 25 416-440 172-196 (254)
244 COG5107 RNA14 Pre-mRNA 3'-end 95.4 3.2 6.9E-05 41.2 29.4 408 26-440 30-531 (660)
245 KOG2610 Uncharacterized conser 95.3 0.45 9.7E-06 45.0 12.8 148 286-436 116-272 (491)
246 KOG4234 TPR repeat-containing 95.3 0.081 1.8E-06 46.0 7.4 90 352-441 103-198 (271)
247 PF04053 Coatomer_WDAD: Coatom 95.3 1 2.2E-05 46.0 16.6 157 80-268 270-428 (443)
248 COG3118 Thioredoxin domain-con 95.3 2.4 5.2E-05 39.8 17.2 143 282-427 143-288 (304)
249 PRK11619 lytic murein transgly 95.1 5.9 0.00013 42.8 32.5 79 143-223 101-179 (644)
250 COG1729 Uncharacterized protei 95.1 0.25 5.5E-06 45.6 10.4 91 285-375 153-246 (262)
251 PF10300 DUF3808: Protein of u 95.0 1.7 3.8E-05 44.9 17.8 160 277-439 192-375 (468)
252 PF00515 TPR_1: Tetratricopept 95.0 0.04 8.6E-07 33.2 3.5 32 378-409 2-33 (34)
253 COG3118 Thioredoxin domain-con 94.9 1.8 3.9E-05 40.6 15.5 121 317-441 143-266 (304)
254 PF07719 TPR_2: Tetratricopept 94.9 0.06 1.3E-06 32.3 4.2 33 378-410 2-34 (34)
255 COG5107 RNA14 Pre-mRNA 3'-end 94.9 4.6 9.9E-05 40.1 25.0 133 274-410 398-535 (660)
256 PF13428 TPR_14: Tetratricopep 94.9 0.07 1.5E-06 34.5 4.7 39 346-384 3-42 (44)
257 PF02259 FAT: FAT domain; Int 94.9 3.1 6.7E-05 41.3 18.9 151 271-423 144-304 (352)
258 KOG1920 IkappaB kinase complex 94.8 5.6 0.00012 44.5 21.0 26 74-99 793-820 (1265)
259 KOG3941 Intermediate in Toll s 94.7 0.24 5.2E-06 45.6 9.0 100 57-156 51-173 (406)
260 KOG2610 Uncharacterized conser 94.6 0.38 8.3E-06 45.4 10.4 116 320-437 115-235 (491)
261 PRK15331 chaperone protein Sic 94.5 0.37 8.1E-06 41.0 9.2 84 183-268 48-131 (165)
262 KOG0890 Protein kinase of the 94.5 15 0.00033 44.5 25.6 310 113-443 1390-1734(2382)
263 PF04184 ST7: ST7 protein; In 94.5 2 4.4E-05 43.3 15.5 59 381-439 263-323 (539)
264 PF07079 DUF1347: Protein of u 94.4 5.9 0.00013 39.5 33.0 117 283-403 389-521 (549)
265 KOG1941 Acetylcholine receptor 94.3 2 4.4E-05 41.3 14.4 42 153-194 18-65 (518)
266 KOG4555 TPR repeat-containing 94.3 0.47 1E-05 38.4 8.8 91 317-409 52-147 (175)
267 PF10300 DUF3808: Protein of u 94.2 1.8 3.9E-05 44.8 15.6 116 288-405 248-375 (468)
268 PF04184 ST7: ST7 protein; In 94.2 4.8 0.0001 40.7 17.4 56 279-334 265-321 (539)
269 smart00299 CLH Clathrin heavy 94.1 3 6.6E-05 35.0 15.1 44 211-255 11-54 (140)
270 KOG3941 Intermediate in Toll s 94.1 0.42 9.1E-06 44.1 9.2 99 159-257 52-173 (406)
271 PF04053 Coatomer_WDAD: Coatom 93.9 1.9 4.2E-05 44.0 14.8 129 209-367 297-425 (443)
272 KOG4648 Uncharacterized conser 93.8 0.11 2.5E-06 48.9 5.3 111 314-431 103-215 (536)
273 smart00299 CLH Clathrin heavy 93.7 3.7 8E-05 34.4 14.7 43 111-154 12-54 (140)
274 KOG1585 Protein required for f 93.5 4.9 0.00011 36.6 14.6 55 276-331 193-250 (308)
275 PRK09687 putative lyase; Provi 93.3 7.8 0.00017 37.0 27.9 237 138-387 34-277 (280)
276 PF02259 FAT: FAT domain; Int 92.7 9.9 0.00021 37.7 18.0 66 376-441 145-214 (352)
277 PF08631 SPO22: Meiosis protei 92.6 9.8 0.00021 36.4 23.5 60 209-269 86-148 (278)
278 COG4105 ComL DNA uptake lipopr 92.1 9.7 0.00021 35.2 19.1 58 382-439 172-232 (254)
279 KOG2066 Vacuolar assembly/sort 91.9 20 0.00044 38.4 24.8 24 176-199 509-532 (846)
280 PF13181 TPR_8: Tetratricopept 91.8 0.26 5.7E-06 29.4 3.4 30 379-408 3-32 (34)
281 PF13431 TPR_17: Tetratricopep 91.8 0.12 2.7E-06 31.1 1.8 29 369-397 4-33 (34)
282 PF13176 TPR_7: Tetratricopept 91.6 0.38 8.2E-06 29.4 3.8 26 413-438 1-26 (36)
283 PF13176 TPR_7: Tetratricopept 91.4 0.27 5.9E-06 30.0 3.1 25 380-404 2-26 (36)
284 KOG1586 Protein required for f 91.2 11 0.00024 34.1 14.4 91 349-439 118-223 (288)
285 KOG1464 COP9 signalosome, subu 91.1 13 0.00028 34.5 19.8 211 174-390 67-317 (440)
286 COG3629 DnrI DNA-binding trans 91.1 1.1 2.4E-05 42.2 8.0 60 380-439 156-215 (280)
287 PF00515 TPR_1: Tetratricopept 91.0 0.32 7E-06 29.1 3.1 32 345-376 2-33 (34)
288 PF09205 DUF1955: Domain of un 91.0 7.7 0.00017 31.8 13.9 64 174-238 88-151 (161)
289 COG4785 NlpI Lipoprotein NlpI, 90.8 0.48 1E-05 42.0 5.1 91 318-411 75-167 (297)
290 KOG4648 Uncharacterized conser 90.8 0.92 2E-05 43.1 7.2 95 280-378 104-199 (536)
291 KOG1920 IkappaB kinase complex 90.6 35 0.00075 38.6 19.9 85 276-371 942-1026(1265)
292 PF10345 Cohesin_load: Cohesin 90.4 29 0.00063 37.5 26.6 164 70-234 58-252 (608)
293 COG3629 DnrI DNA-binding trans 90.1 1.3 2.9E-05 41.6 7.7 61 345-405 154-215 (280)
294 KOG3364 Membrane protein invol 89.6 8.2 0.00018 31.7 10.6 66 374-439 29-99 (149)
295 PF13170 DUF4003: Protein of u 89.5 8.7 0.00019 37.0 13.0 61 290-351 160-224 (297)
296 PF13170 DUF4003: Protein of u 89.4 7.3 0.00016 37.5 12.4 124 124-249 80-224 (297)
297 KOG0276 Vesicle coat complex C 89.3 8.4 0.00018 39.9 12.9 150 254-437 598-747 (794)
298 PF07719 TPR_2: Tetratricopept 89.2 0.55 1.2E-05 27.9 3.1 31 346-376 3-33 (34)
299 COG4649 Uncharacterized protei 89.2 5 0.00011 34.5 9.6 22 247-268 172-193 (221)
300 PF09613 HrpB1_HrpK: Bacterial 89.0 14 0.00029 31.6 13.5 88 318-408 20-108 (160)
301 PF02284 COX5A: Cytochrome c o 88.9 4.3 9.3E-05 31.4 8.2 61 290-352 27-87 (108)
302 KOG4234 TPR repeat-containing 88.7 5.5 0.00012 35.1 9.7 93 318-410 105-201 (271)
303 PF10602 RPN7: 26S proteasome 88.5 5.5 0.00012 35.0 10.1 61 174-234 38-100 (177)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 88.2 4.9 0.00011 30.8 8.0 63 288-352 22-84 (103)
305 PF14853 Fis1_TPR_C: Fis1 C-te 88.1 3.5 7.5E-05 27.8 6.6 51 413-489 3-53 (53)
306 PF06552 TOM20_plant: Plant sp 87.9 4.3 9.3E-05 35.2 8.6 78 360-444 51-140 (186)
307 PF07035 Mic1: Colon cancer-as 87.8 17 0.00037 31.4 13.3 132 92-235 15-148 (167)
308 PF10602 RPN7: 26S proteasome 87.5 10 0.00022 33.4 11.1 95 275-371 38-140 (177)
309 PF09613 HrpB1_HrpK: Bacterial 87.0 2.8 6.1E-05 35.7 6.9 71 355-426 21-93 (160)
310 KOG2114 Vacuolar assembly/sort 86.9 23 0.00051 38.3 14.8 178 209-403 336-516 (933)
311 TIGR02508 type_III_yscG type I 86.8 13 0.00028 28.8 9.9 87 122-212 21-107 (115)
312 KOG4570 Uncharacterized conser 86.7 5.4 0.00012 37.7 9.1 99 135-237 58-165 (418)
313 COG4649 Uncharacterized protei 86.2 21 0.00045 30.9 11.5 121 283-405 68-195 (221)
314 PF06552 TOM20_plant: Plant sp 85.9 1.9 4.1E-05 37.4 5.4 46 393-438 51-100 (186)
315 KOG0276 Vesicle coat complex C 85.8 15 0.00033 38.1 12.4 122 154-301 599-720 (794)
316 KOG4570 Uncharacterized conser 85.7 9.7 0.00021 36.1 10.2 98 236-337 58-164 (418)
317 KOG1308 Hsp70-interacting prot 85.7 0.57 1.2E-05 44.6 2.4 89 356-444 126-215 (377)
318 KOG0376 Serine-threonine phosp 85.6 1.9 4.2E-05 43.1 6.1 88 352-439 12-100 (476)
319 PF07721 TPR_4: Tetratricopept 85.2 1.2 2.7E-05 24.7 2.8 24 412-435 2-25 (26)
320 TIGR02561 HrpB1_HrpK type III 85.0 5.5 0.00012 33.4 7.5 51 390-440 23-73 (153)
321 COG2976 Uncharacterized protei 84.9 27 0.00059 30.9 14.4 114 291-409 70-191 (207)
322 PF13174 TPR_6: Tetratricopept 84.4 1.6 3.5E-05 25.5 3.3 23 386-408 9-31 (33)
323 PF13181 TPR_8: Tetratricopept 84.4 1 2.2E-05 26.7 2.4 30 346-375 3-32 (34)
324 PF13374 TPR_10: Tetratricopep 84.2 1.9 4.1E-05 26.9 3.8 28 412-439 3-30 (42)
325 PF00637 Clathrin: Region in C 83.9 0.7 1.5E-05 39.0 2.0 84 112-198 13-96 (143)
326 KOG0545 Aryl-hydrocarbon recep 83.7 7.6 0.00016 35.4 8.3 89 352-440 186-293 (329)
327 KOG2114 Vacuolar assembly/sort 83.4 75 0.0016 34.7 25.8 165 52-232 346-515 (933)
328 PF07035 Mic1: Colon cancer-as 83.2 30 0.00064 30.0 14.0 131 192-334 14-146 (167)
329 KOG4507 Uncharacterized conser 83.1 3.2 6.9E-05 42.6 6.4 99 321-422 620-721 (886)
330 smart00028 TPR Tetratricopepti 83.1 1.9 4.2E-05 24.3 3.3 27 382-408 6-32 (34)
331 PRK15180 Vi polysaccharide bio 83.0 7.8 0.00017 38.8 8.8 121 285-409 301-423 (831)
332 COG3947 Response regulator con 82.8 43 0.00094 31.6 15.8 60 380-439 282-341 (361)
333 PRK09687 putative lyase; Provi 82.6 46 0.001 31.8 27.8 82 67-154 33-118 (280)
334 COG4455 ImpE Protein of avirul 82.6 5.4 0.00012 35.7 6.9 75 310-386 3-81 (273)
335 COG1747 Uncharacterized N-term 82.5 62 0.0014 33.2 23.9 175 239-420 63-248 (711)
336 PF10345 Cohesin_load: Cohesin 82.5 78 0.0017 34.3 25.8 48 388-435 372-428 (608)
337 COG1747 Uncharacterized N-term 82.4 63 0.0014 33.2 18.6 156 174-336 68-233 (711)
338 PF00637 Clathrin: Region in C 82.3 1.8 3.9E-05 36.5 4.0 43 183-225 18-60 (143)
339 PF04097 Nic96: Nup93/Nic96; 82.3 79 0.0017 34.2 22.2 71 70-142 111-188 (613)
340 PF14853 Fis1_TPR_C: Fis1 C-te 81.8 2.9 6.3E-05 28.2 3.9 32 382-413 6-37 (53)
341 PRK10941 hypothetical protein; 81.7 6.6 0.00014 37.1 7.7 61 380-440 184-244 (269)
342 PF11207 DUF2989: Protein of u 81.6 11 0.00025 33.4 8.5 74 188-262 122-198 (203)
343 KOG4642 Chaperone-dependent E3 81.5 6 0.00013 35.9 6.8 81 358-438 24-105 (284)
344 PF13374 TPR_10: Tetratricopep 81.3 3.9 8.4E-05 25.4 4.4 27 274-300 3-29 (42)
345 PF13174 TPR_6: Tetratricopept 80.1 2.6 5.7E-05 24.6 3.1 28 413-440 2-29 (33)
346 PF02284 COX5A: Cytochrome c o 79.4 11 0.00023 29.3 6.6 46 371-416 39-84 (108)
347 cd00923 Cyt_c_Oxidase_Va Cytoc 79.4 14 0.00031 28.3 7.2 58 89-148 25-83 (103)
348 PF11207 DUF2989: Protein of u 79.3 21 0.00046 31.8 9.4 20 344-363 178-197 (203)
349 PF08631 SPO22: Meiosis protei 78.6 63 0.0014 30.8 25.5 17 184-200 5-21 (278)
350 COG2909 MalT ATP-dependent tra 78.4 1.1E+02 0.0025 33.7 21.1 190 253-446 426-653 (894)
351 KOG1550 Extracellular protein 78.1 1E+02 0.0022 32.9 24.1 273 157-440 228-538 (552)
352 TIGR02508 type_III_yscG type I 78.0 30 0.00065 26.8 9.3 86 223-312 21-106 (115)
353 KOG4279 Serine/threonine prote 77.9 62 0.0013 34.8 13.5 183 174-411 203-400 (1226)
354 PF09477 Type_III_YscG: Bacter 77.7 32 0.0007 27.0 9.6 88 119-210 19-106 (116)
355 smart00028 TPR Tetratricopepti 76.9 4.4 9.6E-05 22.7 3.5 30 346-375 3-32 (34)
356 PF09986 DUF2225: Uncharacteri 76.8 15 0.00032 33.5 8.2 65 377-441 118-195 (214)
357 PF04910 Tcf25: Transcriptiona 76.5 84 0.0018 31.3 14.0 57 383-439 109-167 (360)
358 COG4976 Predicted methyltransf 75.9 4.1 9E-05 36.7 4.2 58 353-410 4-62 (287)
359 KOG2396 HAT (Half-A-TPR) repea 75.6 1E+02 0.0022 31.7 21.2 284 57-371 268-557 (568)
360 PRK15180 Vi polysaccharide bio 75.3 44 0.00094 33.9 11.2 128 319-448 300-428 (831)
361 PRK10941 hypothetical protein; 74.8 17 0.00037 34.4 8.2 65 349-413 186-251 (269)
362 PF14561 TPR_20: Tetratricopep 74.7 7.6 0.00016 29.7 4.9 44 397-440 8-51 (90)
363 COG2976 Uncharacterized protei 73.9 64 0.0014 28.6 14.7 128 73-202 56-189 (207)
364 COG4455 ImpE Protein of avirul 73.8 11 0.00024 33.8 6.2 65 347-411 4-69 (273)
365 PRK13342 recombination factor 73.5 95 0.0021 31.7 14.1 48 174-221 229-279 (413)
366 KOG3807 Predicted membrane pro 73.3 77 0.0017 30.5 11.8 18 395-412 380-397 (556)
367 KOG3824 Huntingtin interacting 73.1 6 0.00013 37.2 4.6 59 356-414 128-187 (472)
368 PRK13800 putative oxidoreducta 72.2 1.9E+02 0.004 33.2 25.6 256 161-439 624-880 (897)
369 PF08424 NRDE-2: NRDE-2, neces 72.1 1E+02 0.0022 30.2 14.4 80 360-439 47-130 (321)
370 PF04190 DUF410: Protein of un 71.7 91 0.002 29.4 17.3 159 254-440 2-170 (260)
371 KOG4507 Uncharacterized conser 71.3 18 0.0004 37.4 7.8 135 304-441 567-706 (886)
372 TIGR02561 HrpB1_HrpK type III 71.2 63 0.0014 27.3 11.0 19 252-270 54-72 (153)
373 PF13929 mRNA_stabil: mRNA sta 70.5 1E+02 0.0022 29.4 13.0 110 86-195 143-261 (292)
374 KOG0551 Hsp90 co-chaperone CNS 70.4 26 0.00056 33.7 8.1 92 346-437 83-179 (390)
375 TIGR03504 FimV_Cterm FimV C-te 69.8 8.5 0.00018 24.8 3.5 27 415-441 3-29 (44)
376 PF10579 Rapsyn_N: Rapsyn N-te 69.7 15 0.00033 27.0 5.1 46 321-366 19-65 (80)
377 KOG4642 Chaperone-dependent E3 68.9 67 0.0015 29.5 10.0 82 321-405 23-106 (284)
378 PF14561 TPR_20: Tetratricopep 68.7 40 0.00087 25.7 7.7 65 373-437 17-85 (90)
379 PHA02875 ankyrin repeat protei 68.5 1.4E+02 0.003 30.3 16.3 198 94-308 18-230 (413)
380 PF07163 Pex26: Pex26 protein; 67.7 73 0.0016 30.0 10.2 85 280-367 90-181 (309)
381 COG3947 Response regulator con 66.1 30 0.00064 32.7 7.4 57 348-404 283-340 (361)
382 PF09477 Type_III_YscG: Bacter 65.2 67 0.0014 25.3 9.3 80 221-303 20-99 (116)
383 PF13762 MNE1: Mitochondrial s 64.8 52 0.0011 27.7 8.1 89 31-119 28-128 (145)
384 PF11846 DUF3366: Domain of un 64.8 15 0.00032 32.9 5.4 45 364-408 131-175 (193)
385 smart00386 HAT HAT (Half-A-TPR 64.7 11 0.00023 21.6 3.2 29 391-419 1-29 (33)
386 KOG0403 Neoplastic transformat 64.5 1.7E+02 0.0036 29.7 21.1 63 380-442 512-574 (645)
387 KOG1464 COP9 signalosome, subu 64.3 1.3E+02 0.0027 28.2 16.5 180 256-435 41-255 (440)
388 PF11663 Toxin_YhaV: Toxin wit 64.1 9.4 0.0002 31.3 3.5 33 82-116 106-138 (140)
389 KOG4077 Cytochrome c oxidase, 64.1 53 0.0012 26.7 7.5 60 291-352 67-126 (149)
390 KOG1258 mRNA processing protei 63.5 2E+02 0.0043 30.3 27.5 177 207-391 297-489 (577)
391 COG5191 Uncharacterized conser 63.2 16 0.00035 34.7 5.2 76 342-417 105-182 (435)
392 PHA02875 ankyrin repeat protei 62.4 1.5E+02 0.0033 30.1 13.1 132 27-167 17-158 (413)
393 PF11768 DUF3312: Protein of u 61.6 1E+02 0.0022 32.2 10.9 55 247-301 413-472 (545)
394 PF09670 Cas_Cas02710: CRISPR- 60.4 1.7E+02 0.0037 29.4 12.5 53 283-336 141-197 (379)
395 KOG2066 Vacuolar assembly/sort 59.4 2.7E+02 0.0059 30.5 24.9 128 141-274 392-537 (846)
396 KOG0292 Vesicle coat complex C 59.0 15 0.00033 39.9 4.8 95 286-405 606-700 (1202)
397 PF07163 Pex26: Pex26 protein; 58.6 1E+02 0.0022 29.2 9.4 87 179-265 90-181 (309)
398 KOG2422 Uncharacterized conser 57.9 2.5E+02 0.0054 29.6 12.8 51 353-403 351-404 (665)
399 PF10366 Vps39_1: Vacuolar sor 57.5 77 0.0017 25.2 7.7 27 275-301 41-67 (108)
400 PF10579 Rapsyn_N: Rapsyn N-te 57.4 32 0.00069 25.4 4.9 46 285-330 18-65 (80)
401 TIGR03504 FimV_Cterm FimV C-te 57.0 27 0.00059 22.4 4.0 22 280-301 6-27 (44)
402 cd08819 CARD_MDA5_2 Caspase ac 56.7 84 0.0018 23.8 7.1 39 254-293 48-86 (88)
403 KOG1550 Extracellular protein 56.7 2.8E+02 0.006 29.7 22.8 17 393-409 525-541 (552)
404 PRK11619 lytic murein transgly 56.5 3E+02 0.0065 30.0 39.4 377 49-445 108-510 (644)
405 PRK12798 chemotaxis protein; R 56.3 2.3E+02 0.0049 28.6 20.8 179 255-437 125-321 (421)
406 PF12862 Apc5: Anaphase-promot 56.3 33 0.00072 26.3 5.4 52 388-439 9-69 (94)
407 PF11846 DUF3366: Domain of un 56.1 52 0.0011 29.3 7.4 37 339-375 139-175 (193)
408 PF14863 Alkyl_sulf_dimr: Alky 55.9 46 0.001 27.9 6.4 63 361-427 58-120 (141)
409 PF04097 Nic96: Nup93/Nic96; 55.9 3E+02 0.0065 29.9 15.9 67 141-208 112-188 (613)
410 KOG0890 Protein kinase of the 55.5 5.2E+02 0.011 32.5 24.1 148 77-231 1389-1542(2382)
411 PF10366 Vps39_1: Vacuolar sor 54.6 73 0.0016 25.3 7.1 27 174-200 41-67 (108)
412 KOG3364 Membrane protein invol 54.2 1.2E+02 0.0025 25.3 8.1 72 341-412 29-106 (149)
413 PF08311 Mad3_BUB1_I: Mad3/BUB 53.3 86 0.0019 25.7 7.6 43 394-436 80-124 (126)
414 PF07720 TPR_3: Tetratricopept 52.5 41 0.00089 20.5 4.1 19 381-399 5-23 (36)
415 KOG3807 Predicted membrane pro 52.4 1.3E+02 0.0028 29.1 9.2 58 350-407 281-341 (556)
416 PF04190 DUF410: Protein of un 51.3 2.2E+02 0.0047 26.9 19.9 159 153-337 2-170 (260)
417 PF12968 DUF3856: Domain of Un 51.2 1.3E+02 0.0028 24.4 8.9 60 378-437 56-126 (144)
418 COG2909 MalT ATP-dependent tra 50.9 4E+02 0.0086 29.8 26.9 216 218-436 426-684 (894)
419 PF13762 MNE1: Mitochondrial s 50.6 1.5E+02 0.0033 24.9 10.2 47 274-320 80-127 (145)
420 PF07575 Nucleopor_Nup85: Nup8 49.5 3.6E+02 0.0078 28.9 16.5 208 219-452 309-534 (566)
421 PRK10564 maltose regulon perip 47.6 37 0.0008 32.4 5.0 41 275-315 259-299 (303)
422 KOG3824 Huntingtin interacting 47.1 34 0.00073 32.5 4.6 52 387-438 126-177 (472)
423 COG4976 Predicted methyltransf 46.9 40 0.00088 30.7 4.9 57 387-443 5-61 (287)
424 KOG4814 Uncharacterized conser 46.9 2.8E+02 0.006 29.7 11.3 86 355-440 365-457 (872)
425 KOG0292 Vesicle coat complex C 45.7 3.4E+02 0.0073 30.3 12.0 153 23-201 622-782 (1202)
426 PF11848 DUF3368: Domain of un 44.7 71 0.0015 20.9 4.7 31 83-113 14-44 (48)
427 cd00280 TRFH Telomeric Repeat 44.7 1.6E+02 0.0036 25.9 8.0 21 352-372 119-139 (200)
428 KOG2063 Vacuolar assembly/sort 44.2 5.2E+02 0.011 29.2 17.6 261 123-421 460-742 (877)
429 PRK13342 recombination factor 44.0 3.7E+02 0.008 27.4 17.0 98 204-319 173-276 (413)
430 KOG2297 Predicted translation 43.4 2.3E+02 0.0049 27.2 9.2 197 29-235 155-399 (412)
431 PF11768 DUF3312: Protein of u 42.9 2.9E+02 0.0063 29.0 10.8 23 177-199 413-435 (545)
432 KOG0376 Serine-threonine phosp 42.8 39 0.00084 34.3 4.6 104 280-388 11-116 (476)
433 COG0790 FOG: TPR repeat, SEL1 42.6 3.1E+02 0.0067 26.1 19.9 112 156-270 92-219 (292)
434 PF14689 SPOB_a: Sensor_kinase 42.5 56 0.0012 22.8 4.2 21 279-299 29-49 (62)
435 KOG4077 Cytochrome c oxidase, 42.4 1.5E+02 0.0032 24.3 6.8 47 190-236 67-113 (149)
436 cd08819 CARD_MDA5_2 Caspase ac 42.4 1.5E+02 0.0032 22.5 6.7 65 125-191 21-85 (88)
437 PF07575 Nucleopor_Nup85: Nup8 42.4 2.8E+02 0.006 29.8 11.4 60 206-267 404-463 (566)
438 KOG2471 TPR repeat-containing 41.3 4.2E+02 0.0092 27.4 13.1 319 98-424 9-382 (696)
439 PRK10564 maltose regulon perip 41.3 40 0.00087 32.1 4.3 36 74-109 260-295 (303)
440 PF11525 CopK: Copper resistan 41.3 11 0.00024 26.5 0.5 21 556-576 8-28 (73)
441 smart00777 Mad3_BUB1_I Mad3/BU 41.1 1.5E+02 0.0032 24.3 7.0 42 394-435 80-123 (125)
442 PF10255 Paf67: RNA polymerase 40.4 1.8E+02 0.0039 29.4 8.9 56 348-404 126-191 (404)
443 PF11838 ERAP1_C: ERAP1-like C 40.0 3.6E+02 0.0077 26.1 18.2 82 324-406 146-230 (324)
444 PF11838 ERAP1_C: ERAP1-like C 39.9 3.6E+02 0.0077 26.1 17.5 86 223-308 146-237 (324)
445 PF11848 DUF3368: Domain of un 39.7 1.1E+02 0.0023 20.0 5.1 31 184-214 14-44 (48)
446 cd08326 CARD_CASP9 Caspase act 38.7 86 0.0019 23.5 4.9 61 25-89 19-79 (84)
447 PF04090 RNA_pol_I_TF: RNA pol 38.1 3E+02 0.0065 24.7 10.2 29 274-302 42-70 (199)
448 PF08311 Mad3_BUB1_I: Mad3/BUB 37.9 2.3E+02 0.0049 23.2 9.5 58 309-369 66-124 (126)
449 KOG0686 COP9 signalosome, subu 37.8 4.4E+02 0.0095 26.5 14.1 59 142-200 151-215 (466)
450 PF14689 SPOB_a: Sensor_kinase 37.3 99 0.0021 21.6 4.8 30 307-336 22-51 (62)
451 cd08332 CARD_CASP2 Caspase act 36.9 79 0.0017 24.1 4.6 58 25-86 23-80 (90)
452 PF11663 Toxin_YhaV: Toxin wit 36.7 40 0.00087 27.8 3.0 34 182-217 105-138 (140)
453 COG5159 RPN6 26S proteasome re 36.6 3.8E+02 0.0083 25.5 18.0 156 178-333 9-190 (421)
454 PF06957 COPI_C: Coatomer (COP 36.3 1.3E+02 0.0028 30.5 7.2 39 372-410 293-333 (422)
455 KOG1524 WD40 repeat-containing 36.2 1.8E+02 0.0039 30.1 8.0 90 343-436 572-669 (737)
456 PF04034 DUF367: Domain of unk 35.6 2.5E+02 0.0053 23.1 7.2 51 346-397 68-119 (127)
457 TIGR02270 conserved hypothetic 35.5 5E+02 0.011 26.5 26.0 45 139-183 98-142 (410)
458 PF14669 Asp_Glu_race_2: Putat 35.1 3.3E+02 0.0071 24.3 13.3 57 211-267 136-206 (233)
459 COG0735 Fur Fe2+/Zn2+ uptake r 35.1 2E+02 0.0042 24.3 7.2 46 176-221 24-69 (145)
460 COG2912 Uncharacterized conser 34.8 1.4E+02 0.0029 28.2 6.6 58 382-439 186-243 (269)
461 PRK13800 putative oxidoreducta 34.3 7.7E+02 0.017 28.3 29.9 254 61-336 625-880 (897)
462 KOG0687 26S proteasome regulat 33.8 4.6E+02 0.0099 25.6 14.1 23 347-369 107-129 (393)
463 PF04090 RNA_pol_I_TF: RNA pol 33.6 2.2E+02 0.0048 25.5 7.4 58 380-437 44-102 (199)
464 KOG1308 Hsp70-interacting prot 33.2 40 0.00087 32.6 2.9 116 320-438 126-242 (377)
465 KOG0686 COP9 signalosome, subu 32.6 5.3E+02 0.012 26.0 13.8 90 243-334 151-255 (466)
466 PF11817 Foie-gras_1: Foie gra 32.4 2.2E+02 0.0048 26.5 7.9 17 318-334 188-204 (247)
467 PF05119 Terminase_4: Phage te 32.4 1.5E+02 0.0033 22.7 5.8 35 464-498 57-91 (100)
468 PRK11639 zinc uptake transcrip 31.7 2E+02 0.0044 25.0 6.9 47 177-223 30-76 (169)
469 COG0735 Fur Fe2+/Zn2+ uptake r 31.7 2.4E+02 0.0051 23.8 7.1 61 95-156 10-70 (145)
470 KOG2062 26S proteasome regulat 31.3 7.4E+02 0.016 27.2 23.5 119 282-405 510-634 (929)
471 PF12862 Apc5: Anaphase-promot 31.1 2.4E+02 0.0052 21.5 8.2 15 285-299 10-24 (94)
472 KOG0991 Replication factor C, 31.1 4.3E+02 0.0094 24.5 11.0 35 205-240 237-271 (333)
473 PRK11639 zinc uptake transcrip 30.3 2.2E+02 0.0047 24.8 6.9 58 99-157 19-76 (169)
474 KOG2300 Uncharacterized conser 30.0 6.5E+02 0.014 26.1 21.1 212 158-369 299-552 (629)
475 PF15015 NYD-SP12_N: Spermatog 29.8 6.1E+02 0.013 25.8 11.3 26 350-375 234-259 (569)
476 KOG0991 Replication factor C, 29.5 4.6E+02 0.01 24.3 11.3 56 261-318 227-282 (333)
477 PF15161 Neuropep_like: Neurop 29.2 29 0.00064 23.2 0.9 18 535-553 11-28 (65)
478 COG5159 RPN6 26S proteasome re 29.1 5.2E+02 0.011 24.7 14.8 161 280-440 10-194 (421)
479 PF02184 HAT: HAT (Half-A-TPR) 28.6 50 0.0011 19.6 1.7 14 394-407 4-17 (32)
480 COG5108 RPO41 Mitochondrial DN 28.3 3E+02 0.0064 29.6 8.2 47 278-324 33-81 (1117)
481 PF09670 Cas_Cas02710: CRISPR- 28.1 6.3E+02 0.014 25.4 12.3 55 181-236 140-198 (379)
482 cd08326 CARD_CASP9 Caspase act 28.1 2.2E+02 0.0048 21.3 5.6 40 152-191 41-80 (84)
483 PF11123 DNA_Packaging_2: DNA 27.9 1.1E+02 0.0024 22.1 3.7 34 52-85 9-45 (82)
484 TIGR02414 pepN_proteo aminopep 27.8 9.5E+02 0.021 27.4 14.8 58 376-433 772-836 (863)
485 COG2912 Uncharacterized conser 27.6 1.8E+02 0.0038 27.5 6.0 63 350-412 187-250 (269)
486 PF11264 ThylakoidFormat: Thyl 27.5 4.7E+02 0.01 23.8 10.5 19 1-19 59-80 (216)
487 PF15469 Sec5: Exocyst complex 27.4 4.2E+02 0.0092 23.2 11.4 24 313-336 91-114 (182)
488 cd00280 TRFH Telomeric Repeat 27.0 4.5E+02 0.0097 23.3 12.2 31 382-413 116-146 (200)
489 COG2178 Predicted RNA-binding 27.0 4.6E+02 0.0099 23.4 8.7 51 251-301 38-97 (204)
490 COG5108 RPO41 Mitochondrial DN 26.1 3.1E+02 0.0067 29.5 7.9 72 111-182 33-113 (1117)
491 PRK14015 pepN aminopeptidase N 26.0 1E+03 0.022 27.2 14.7 59 376-434 782-847 (875)
492 cd07153 Fur_like Ferric uptake 25.7 1.8E+02 0.004 23.0 5.4 46 77-122 6-51 (116)
493 PF08967 DUF1884: Domain of un 25.5 84 0.0018 23.2 2.8 28 469-496 6-33 (85)
494 KOG1498 26S proteasome regulat 25.3 7.1E+02 0.015 25.0 12.1 171 286-461 25-262 (439)
495 KOG3636 Uncharacterized conser 25.0 5.8E+02 0.013 25.9 9.1 84 201-285 177-272 (669)
496 PF14044 NETI: NETI protein 24.0 59 0.0013 22.1 1.7 17 477-493 10-26 (57)
497 PF11817 Foie-gras_1: Foie gra 23.7 2.7E+02 0.0058 26.0 6.8 19 349-367 183-201 (247)
498 cd07153 Fur_like Ferric uptake 23.3 2E+02 0.0043 22.8 5.1 48 177-224 5-52 (116)
499 KOG4521 Nuclear pore complex, 23.1 1.3E+03 0.027 27.2 15.1 108 249-360 927-1070(1480)
500 KOG0889 Histone acetyltransfer 22.8 2E+03 0.043 29.4 21.5 92 281-372 2744-2840(3550)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-120 Score=983.28 Aligned_cols=577 Identities=38% Similarity=0.688 Sum_probs=569.2
Q ss_pred CCCCCHHHHHHHHhcCCC---CchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHHH
Q 046803 3 NKQPHSPAYEAILKAGPR---LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79 (580)
Q Consensus 3 ~~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~ 79 (580)
++.||.+||+++|.+|+. .+.++++|..+.+.|+.||+.++|+|+..|++.|++++|.++|++|++||+++||++|.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 578999999999999964 47789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Q 046803 80 RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV 159 (580)
Q Consensus 80 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 159 (580)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++|..+.+.|+.+|..++|+||++|+++|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 046803 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239 (580)
Q Consensus 160 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 239 (580)
|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|..+.+.|++
T Consensus 278 A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~ 357 (697)
T PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357 (697)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046803 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319 (580)
Q Consensus 240 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 319 (580)
||..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHH
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 399 (580)
+.|++++|.++|+.|.+++|+.|+..+|++++++|++.|++++|.+++ +.++..|+..+|++|+.+|+.+|+++.|..+
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~-~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI-RRAPFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999999988899999999999999999999999999999 7789999999999999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHH
Q 046803 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479 (580)
Q Consensus 400 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 479 (580)
++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+++.||+||+++++.+|.|++|+..||+.+++++.+.+
T Consensus 517 ~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 596 (697)
T PLN03081 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596 (697)
T ss_pred HHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccCCccccccccchhhhhhhcccccHHHHHHHhhccCCCCCeEEEEeccccCCcchhhhHHHhhhcCceEE
Q 046803 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559 (580)
Q Consensus 480 l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~ 559 (580)
+..+|++.||.||+..++|++++++|+..+.+||||||++|||+++|+|.||||+||||+|+|||+|+|+||++++|+||
T Consensus 597 l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~ 676 (697)
T PLN03081 597 LMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIV 676 (697)
T ss_pred HHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccccccCccccCCCCC
Q 046803 560 VRDRLRFHHFKRGSCSCLDYW 580 (580)
Q Consensus 560 ~~d~~~~h~~~~g~csc~~~w 580 (580)
|||.+|||||+||+|||+|||
T Consensus 677 ~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 677 VRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred EecCCccccCCCCcccccccC
Confidence 999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-115 Score=965.69 Aligned_cols=573 Identities=35% Similarity=0.642 Sum_probs=562.5
Q ss_pred CCCCCCHHHHHHHHhcCC---CCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHH
Q 046803 2 KNKQPHSPAYEAILKAGP---RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78 (580)
Q Consensus 2 ~~~~p~~~~~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li 78 (580)
.|++||.+||+++|.+|+ +.+.++++|..+.+.|+.||+.++|+||..|++.|++++|.++|++|++||+++||+||
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li 361 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence 489999999999999995 45889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Q 046803 79 IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158 (580)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 158 (580)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 046803 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238 (580)
Q Consensus 159 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 238 (580)
+|.++|++|.++|+++||++|.+|+++|+.++|+++|++|.. +++||..||++++.+|++.|+++.+.++|..+.+.|+
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999986 5999999999999999999999999999999999999
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 318 (580)
.++..++|+|+++|+++|++++|.++|+.+ ++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 398 (580)
++.|++++|.++|+.|.+++|+.|+..+|++++++|++.|++++|.+++ +.|+.+||..+|++|+.+|..+|+.+.|+.
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~-~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI-NKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999978899999999999999999999999999999 778999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHH
Q 046803 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 478 (580)
+.+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++++||+|||++++++|.|..|+.+||+.++|+..|+
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~ 758 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccCCccccccccchhhhhhhcccccHHHHHHHhhccCCCCCeEEEEeccccCCcchhhhHHHhhhcCceE
Q 046803 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558 (580)
Q Consensus 479 ~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~ 558 (580)
+|..+|++.||.||+..+++ +++++|+..+++||||||++|||++||+|+||||+||||+|+|||+++|+||++.+|+|
T Consensus 759 ~l~~~~~~~g~~~~~~~~~~-~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i 837 (857)
T PLN03077 759 GFYEKMKASGLAGSESSSMD-EIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREI 837 (857)
T ss_pred HHHHHHHhCCcCCCcchhcc-ccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEE
Confidence 99999999999999998884 47889999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCccccccCccccCCC
Q 046803 559 IVRDRLRFHHFKRGSCSCLD 578 (580)
Q Consensus 559 ~~~d~~~~h~~~~g~csc~~ 578 (580)
||||.+|||||+||+|||+|
T Consensus 838 ~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 838 SVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EEecCCcceeCCCCcccCCC
Confidence 99999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-72 Score=622.01 Aligned_cols=564 Identities=25% Similarity=0.400 Sum_probs=496.5
Q ss_pred CCCCCCHHHHHHHHhcCCC---CchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHH
Q 046803 2 KNKQPHSPAYEAILKAGPR---LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78 (580)
Q Consensus 2 ~~~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li 78 (580)
.|+.|+..||.+++++|.. +..|.++|+.+.+.|..+++.++|+||..|++.|+++.|.++|++|++||+++||+||
T Consensus 80 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li 159 (857)
T PLN03077 80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV 159 (857)
T ss_pred cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHH
Confidence 3688999999999999954 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Q 046803 79 IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158 (580)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 158 (580)
.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.++|..+++.|+.||..++|+||++|+++|+++
T Consensus 160 ~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 239 (857)
T PLN03077 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 046803 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238 (580)
Q Consensus 159 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 238 (580)
+|.++|++|+++|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+
T Consensus 240 ~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 318 (580)
.||..+||+|+++|+++|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 398 (580)
++.|++++|.++++.+.+. |+.|+..+|++|+++|+++|++++|.++| +.|. +||..+|++++.+|.+.|+.++|..
T Consensus 400 ~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf-~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVF-HNIP-EKDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred hccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHH-HhCC-CCCeeeHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999864 99999999999999999999999999999 5554 4788999999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECC---------------------E-
Q 046803 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ---------------------K- 456 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~---------------------~- 456 (580)
+|++|.+.-++|..+|..++.+|++.|.++.+.+++..|.+.|+.++.......++. .
T Consensus 477 lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s 556 (857)
T PLN03077 477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS 556 (857)
T ss_pred HHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhh
Confidence 999998655556777777777777777777777777776666665443221111100 0
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccCCccccccccchhhhhhhc---ccccHHHHHHHhhccCCCCCeEEE
Q 046803 457 NYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL---RYHSEKLALAFGLMRTSPGMTIRI 533 (580)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~h~e~la~~~~~~~~~~~~~~~~ 533 (580)
...++.++..|++.+++.+ ++++|++.|+.||..++..-+..+.+.+.+ ....+.+.-.+|+.++..+.. ++
T Consensus 557 ~n~lI~~~~~~G~~~~A~~----lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~l 631 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVE----LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CV 631 (857)
T ss_pred HHHHHHHHHHcCCHHHHHH----HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HH
Confidence 0123456677888888877 677789999999999887666666554443 233444544688888776544 89
Q ss_pred EeccccCCcchhhhHHHhhhcCce------EEeeCCCccccccCcc
Q 046803 534 VKNLRMCVDCHSAIKFISVATNRE------IIVRDRLRFHHFKRGS 573 (580)
Q Consensus 534 ~~~l~~~~~~~~~~~~~s~~~~~~------~~~~d~~~~h~~~~g~ 573 (580)
++.+.++|+..+|.++|.+|+.++ .++..|+.+.+.+.|+
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 999999999999999999997432 2344555555554443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-61 Score=525.95 Aligned_cols=439 Identities=19% Similarity=0.275 Sum_probs=409.3
Q ss_pred CCHHHHHHHHhcCC---CCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCC----CCChhhHHHHH
Q 046803 6 PHSPAYEAILKAGP---RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP----SPDSFLFNTLI 78 (580)
Q Consensus 6 p~~~~~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~----~~~~~~~~~li 78 (580)
||.+||+.+|.+|. +.+.|.++|..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||.++||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999995 458899999999999999999999999999999999999999999998 58999999999
Q ss_pred HHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHhCCC
Q 046803 79 IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV--SGYDSDLHVQAALVNFYAKSNN 156 (580)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~ 156 (580)
.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|+++|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999987 6789999999999999999999
Q ss_pred HHHHHHHHccCCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHH
Q 046803 157 VDVARKVFDRMPD----KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232 (580)
Q Consensus 157 ~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 232 (580)
+++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|..
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999976 567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 046803 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS----ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308 (580)
Q Consensus 233 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 308 (580)
|.+.|+.|+..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999995 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH----HcC-------------------CHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG----RAG-------------------LLNEAYK 365 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~ 365 (580)
.||+.++.+|++.|++++|.++|..|.+. |+.||..+|++++.++. +++ ..++|..
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 99999999999999999999999999864 99999999999997643 222 2467999
Q ss_pred HHHhHc--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 366 FVKDVI--GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSV-EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 366 ~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
+|++|. ++.||..+|+.++.++...+..+.+..+++.+... .+++..+|..|++++.+. .++|..++++|.+.|+
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 997776 88899999999998888888888888888877543 356788999999988432 3689999999999999
Q ss_pred ccCCc
Q 046803 443 KKHVG 447 (580)
Q Consensus 443 ~~~~~ 447 (580)
.|+..
T Consensus 912 ~p~~~ 916 (1060)
T PLN03218 912 VPSVS 916 (1060)
T ss_pred CCCcc
Confidence 98765
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.7e-61 Score=520.35 Aligned_cols=523 Identities=17% Similarity=0.237 Sum_probs=411.6
Q ss_pred CHHHHHHHHhcC---CCCchHHHHHHHHHHhCC-CCChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHHHHHH
Q 046803 7 HSPAYEAILKAG---PRLKPLQQVHAHLIVAGY-GRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNS 82 (580)
Q Consensus 7 ~~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~ 82 (580)
+...|..++..| ++++.+.++++.|.+.|+ .++...++.++..|.+.+.+++|.++|+.|+.||..+||.+|.+|+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 444444444444 677888889998888885 4577777888888888888999999999998899999999999999
Q ss_pred cCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 046803 83 KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162 (580)
Q Consensus 83 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 162 (580)
+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999998899999999999999999999999999999999988888899999999999999999999999
Q ss_pred HHccCCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHH--CCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 046803 163 VFDRMPD----KSVVAWNSMISGYEQNGFAKEAIGLFNLMRD--FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236 (580)
Q Consensus 163 ~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 236 (580)
+|++|.+ ||..+||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9988853 7888999999999999999999999999876 578889999999999999999999999999999998
Q ss_pred CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046803 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSE----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312 (580)
Q Consensus 237 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 312 (580)
|++|+..+||++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 8889999999999999999999999999988874 788899999999999999999999999999888999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc--CCCCCHHHHHHHHHHHHhc
Q 046803 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI--GEKPAPAVWTAMLGACKMH 390 (580)
Q Consensus 313 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~ll~~~~~~ 390 (580)
.++.+|++.|++++|.++|++|.+ .|+.|+..+|+.||.+|++.|++++|.++|++|. +..||..+|++++.+|.+.
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999998875 4888999999999999999999999999996554 6788999999999999999
Q ss_pred CCchHHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCC
Q 046803 391 KNFDLGVEVAEHLLSVE-PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPN 469 (580)
Q Consensus 391 g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 469 (580)
|++++|.+++++|.+.+ .+|..+|..|+.+|. ++++++.++.+.+..-+. +.. ......
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----g~~--------------~~~n~w 827 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----GRP--------------QIENKW 827 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----ccc--------------ccccch
Confidence 99999999999988766 335677888876654 245555555444332110 000 000112
Q ss_pred hHHHHHHHHHHHHHHHHcCccCCccccccccchhhhhhhcccccHHHHHHHhhccCCCCCe--EEEEeccccCCc-chhh
Q 046803 470 TNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT--IRIVKNLRMCVD-CHSA 546 (580)
Q Consensus 470 ~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~ 546 (580)
..++. .++++|.+.|+.||..++...+ .+..........+.+--.+++.+.+++.. ..+++.+ +. -++|
T Consensus 828 ~~~Al----~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A 899 (1060)
T PLN03218 828 TSWAL----MVYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRA 899 (1060)
T ss_pred HHHHH----HHHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHH
Confidence 23344 3788899999999987765544 22211111122333444567666666532 3455543 22 2579
Q ss_pred hHHHhhhcCceE
Q 046803 547 IKFISVATNREI 558 (580)
Q Consensus 547 ~~~~s~~~~~~~ 558 (580)
..++..|..+.|
T Consensus 900 ~~l~~em~~~Gi 911 (1060)
T PLN03218 900 FSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHHHcCC
Confidence 999988886654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.7e-60 Score=512.03 Aligned_cols=489 Identities=20% Similarity=0.339 Sum_probs=427.7
Q ss_pred CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 046803 68 SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146 (580)
Q Consensus 68 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 146 (580)
.++.++|+.+|.++.+.|++++|+++|++|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHH
Q 046803 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226 (580)
Q Consensus 147 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 226 (580)
|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 046803 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306 (580)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 306 (580)
.+++..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHH
Q 046803 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386 (580)
Q Consensus 307 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~ 386 (580)
|..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|++|+++|+++|++++|.++|++ |. +||..+|++|+.+
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~-m~-~~d~~t~n~lI~~ 400 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDR-MP-RKNLISWNALIAG 400 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHh-CC-CCCeeeHHHHHHH
Confidence 9999999999999999999999999999865 9999999999999999999999999999954 43 4899999999999
Q ss_pred HHhcCCchHHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-CCCccCCceeEEEECCEEEEEeeCC
Q 046803 387 CKMHKNFDLGVEVAEHLLSVE-PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ-KGLKKHVGYSTVEVDQKNYLFSMGD 464 (580)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~~~~~~ 464 (580)
|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+...+.. ++.+.
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~--------li~~l 472 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC--------MIELL 472 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh--------HHHHH
Confidence 999999999999999999866 44688999999999999999999999999986 588876644433 33445
Q ss_pred CCCCChHHHHHHHHHHHHHHHHcCccCCccccccccchhhhhhhcccccHHHHHHHhhccCCCCCeEEEEeccccCCcch
Q 046803 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544 (580)
Q Consensus 465 ~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (580)
...+..+++++.+ ++.++.|+..++-.-+..+.+.+.+-.-.+-....+++.+...+..+.+++.+..+|+..
T Consensus 473 ~r~G~~~eA~~~~-------~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 473 GREGLLDEAYAMI-------RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HhcCCHHHHHHHH-------HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence 5678888887643 356888988664433333332222110000111124555554556777888899999999
Q ss_pred hhhHHHhhhcCceEEee-------CCCccccccCccc
Q 046803 545 SAIKFISVATNREIIVR-------DRLRFHHFKRGSC 574 (580)
Q Consensus 545 ~~~~~~s~~~~~~~~~~-------d~~~~h~~~~g~c 574 (580)
+|.+++..|..+.+-.. -.+..|.|-.|-.
T Consensus 546 ~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 546 EAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 99999999998764322 2345577765543
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=1.8e-31 Score=213.85 Aligned_cols=106 Identities=62% Similarity=1.011 Sum_probs=97.0
Q ss_pred ceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccCCccccccccchhhh--------hhhcccccHHHHH
Q 046803 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER--------EYSLRYHSEKLAL 518 (580)
Q Consensus 447 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~h~e~la~ 518 (580)
|++|+++ |.|++|+.+||+. ++..++...||.|++..+.|+++++++ +..++.||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6889776 9999999999998 356667889999999999998888766 5688999999999
Q ss_pred HHhhccCCCCCeEEEEecc-ccCCcchhhhHHHhhhcCceEEeeCCCcccccc
Q 046803 519 AFGLMRTSPGMTIRIVKNL-RMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570 (580)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~ 570 (580)
+|||+++ +|+||+ |+|+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999997
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.1e-26 Score=259.97 Aligned_cols=395 Identities=12% Similarity=0.087 Sum_probs=286.2
Q ss_pred ChhhhchHHHHHhccCChhHHHHHHccCC---CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046803 39 SRSMLTKLLSLVCDAGFITYAQRIFFCIP---SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115 (580)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 115 (580)
++.+++.+...+...+++++|.+.|+++. +.+...+..+...+...|++++|.+.|+++...+ +.+..++..+...
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 542 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGL 542 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 44555555556666666666666666543 2344455566666666666666666666665543 2244555666666
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChhHHH
Q 046803 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAI 192 (580)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 192 (580)
+...|+.++|...+.++.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|+
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 666667777777766666554 34455666677777777777777777766643 35567777777777777777777
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--
Q 046803 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-- 270 (580)
Q Consensus 193 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 270 (580)
..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.+
T Consensus 622 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 622 SSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777776642 3345566677777777777777777777777654 55567777777777788888888887777764
Q ss_pred -CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 046803 271 -LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349 (580)
Q Consensus 271 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 349 (580)
.+...|..+...+...|++++|+..|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~ 775 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTA 775 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 35566777778888888888888888888774 455567777888888888888888888888753 3446778888
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 428 (580)
+...|...|++++|.+.|++++...| ++.+++.+...+...|+ ++|+..++++++..|+++..+..++.+|...|+++
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 88888889999999999987777666 47778888888888888 78999999999888988888888999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 046803 429 RVEVVRNIMIQKGL 442 (580)
Q Consensus 429 ~a~~~~~~m~~~~~ 442 (580)
+|.++++++.+.+.
T Consensus 855 ~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 855 RALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999887654
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=4.1e-26 Score=257.69 Aligned_cols=414 Identities=9% Similarity=0.012 Sum_probs=362.4
Q ss_pred cCCCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHH
Q 046803 17 AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLF 93 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 93 (580)
..++.+.+...+..+++.. ..+...+..+...+...+++++|.+.|+.+.+ .+..+++.+...+.+.|++++|..+
T Consensus 477 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred hCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3356677888888887654 23456677777788899999999999998753 5678899999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---C
Q 046803 94 YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---K 170 (580)
Q Consensus 94 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~ 170 (580)
|+++...+ +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|...|+++.+ .
T Consensus 556 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 633 (899)
T TIGR02917 556 LEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633 (899)
T ss_pred HHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99998764 3356677888899999999999999999998764 56788999999999999999999999998754 3
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhh
Q 046803 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250 (580)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 250 (580)
+...|..+...|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 66789999999999999999999999998753 4457789999999999999999999999999886 667888999999
Q ss_pred HhhhcCCHHHHHHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046803 251 MYARCGNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328 (580)
Q Consensus 251 ~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 328 (580)
.|.+.|++++|.+.|+.+.+ |+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999998864 666788889999999999999999999998853 446778888899999999999999
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 329 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
++|+++.+. .+++...+..+...+...|+ ++|++.+++.+...|+ +.++..+...+...|++++|...++++++.+
T Consensus 791 ~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 791 KHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999863 34568889999999999999 8899999988888874 7788899999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 408 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 868 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 868 PEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999863
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-22 Score=196.25 Aligned_cols=359 Identities=15% Similarity=0.191 Sum_probs=314.5
Q ss_pred hhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchH-HHHHHH
Q 046803 71 SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP-SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH-VQAALV 148 (580)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li 148 (580)
..+|..+.+.+-..|++++|+.+++.|++. +| ....|..+..++...|+.+.|.+.|.+.++.. |+.. ..+.+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 457888999999999999999999999985 44 56679999999999999999999999998864 4433 344566
Q ss_pred HHHHhCCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhCCChH
Q 046803 149 NFYAKSNNVDVARKVFDRMPD--KS-VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS-TTCVCVLAACAQLGDID 224 (580)
Q Consensus 149 ~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~ 224 (580)
+..-..|++.+|...+.+..+ |. .+.|+.|...+..+|+...|+..|++... +.|+- ..|..+...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcch
Confidence 667778999999998887654 32 47899999999999999999999999987 46664 48999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CC-hHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--LN-VIAWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
.|...+....... +....++..+...|..+|.++-|+..+++..+ |+ ..+|+.|..++-..|+..+|...|.+.+.
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999998888764 55678888999999999999999999999875 44 56999999999999999999999999988
Q ss_pred CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HH
Q 046803 302 HGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PA 378 (580)
Q Consensus 302 ~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 378 (580)
+.|+. ...+.|..++...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|+..|++++.++|+ ..
T Consensus 349 --l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 --LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred --hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 45554 578899999999999999999999886 44565 677889999999999999999999999999998 78
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 379 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
.++.+...|...|+.+.|++.+.+++..+|.-..+...|+.+|-..|+..+|.+-++...+..
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 899999999999999999999999999999999999999999999999999999999987754
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2.8e-22 Score=194.45 Aligned_cols=378 Identities=12% Similarity=0.100 Sum_probs=324.6
Q ss_pred hhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHH-HH
Q 046803 42 MLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS-CA 117 (580)
Q Consensus 42 ~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~ 117 (580)
.|+.+-+.+-..|++++|+..++.+.+ ..+..|-.+..++...|+.+.|.++|.+.++ +.|+.....+-+.- .-
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH
Confidence 444455555577799999999998764 4677999999999999999999999999887 56766554333322 33
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCC---hhHHHHHHHHHHhCCChhHHHHH
Q 046803 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS---VVAWNSMISGYEQNGFAKEAIGL 194 (580)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 194 (580)
..|++++|..-|.++++.. +.-...|+.|...+-..|++..|+..|++...-| ..+|-.|...|-..+.+++|+..
T Consensus 196 a~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 4689999999999988764 2235678899999999999999999999987643 46899999999999999999999
Q ss_pred HHHHHHCCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C
Q 046803 195 FNLMRDFGVNPD-STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L 271 (580)
Q Consensus 195 ~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~ 271 (580)
|.+.... .|+ .+.+..+...|...|.++.|...+++.++.. +.-...|+.|..++-..|++.+|.+.+++... |
T Consensus 275 Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 275 YLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 9998864 565 5688888888999999999999999999875 45578999999999999999999999998875 3
Q ss_pred -ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHH
Q 046803 272 -NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHV 348 (580)
Q Consensus 272 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 348 (580)
-..+.+.|...|...|.+++|..+|....+ +.|.. ..++.|...|-+.|++++|...|++.. .++|+ ...|+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~ 426 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALS 426 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHH
Confidence 456889999999999999999999999887 56665 578899999999999999999999987 78887 78999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 427 (580)
.+...|-..|+.+.|.+.+.+++.+.|. ...++.|...|...|+..+|+..|+.++++.|+.|.+|-.++.+..--.+|
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 9999999999999999999999999996 788999999999999999999999999999999999999998887666666
Q ss_pred hHH
Q 046803 428 DRV 430 (580)
Q Consensus 428 ~~a 430 (580)
.+-
T Consensus 507 ~D~ 509 (966)
T KOG4626|consen 507 TDY 509 (966)
T ss_pred cch
Confidence 553
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=2e-19 Score=192.59 Aligned_cols=358 Identities=11% Similarity=0.004 Sum_probs=261.3
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Q 046803 75 NTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154 (580)
Q Consensus 75 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 154 (580)
......+.+.|++++|+..|++.+. ..|+...|..+..++...|++++|...+..+++.. +.+...+..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 3444555566666666666666554 34455555555556666666666666666665543 22344555566666666
Q ss_pred CCHHHHHHHHccCC---------------------------------CCChhHHHHHHH---------------------
Q 046803 155 NNVDVARKVFDRMP---------------------------------DKSVVAWNSMIS--------------------- 180 (580)
Q Consensus 155 g~~~~A~~~f~~~~---------------------------------~~~~~~~~~li~--------------------- 180 (580)
|++++|...|.... ..+..++..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 66666654332210 001011111100
Q ss_pred ---------HH------HhCCChhHHHHHHHHHHHCC-CCC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHH
Q 046803 181 ---------GY------EQNGFAKEAIGLFNLMRDFG-VNP-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243 (580)
Q Consensus 181 ---------~~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 243 (580)
.+ ...+++++|++.|++..+.+ ..| +...+..+...+...|++++|...+...++.. +.+..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHH
Confidence 00 12357889999999998764 234 34567778888889999999999999999875 44567
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACA 319 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~ 319 (580)
.+..+..+|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHH
Confidence 888999999999999999999998764 45788999999999999999999999999884 454 566777888899
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCH-HH-------HHHHHHHHHhcC
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP-AV-------WTAMLGACKMHK 391 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~-------~~~ll~~~~~~g 391 (580)
+.|++++|...|+...+. .+.+...++.+..++...|++++|++.|++++...|+. .+ ++..+..+...|
T Consensus 445 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 999999999999998753 23357888899999999999999999998888776641 11 222223344569
Q ss_pred CchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 392 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
++++|+.+++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.1e-20 Score=189.94 Aligned_cols=292 Identities=13% Similarity=0.119 Sum_probs=199.0
Q ss_pred HHhCCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhCCChH
Q 046803 151 YAKSNNVDVARKVFDRMPDK---SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD---STTCVCVLAACAQLGDID 224 (580)
Q Consensus 151 y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~ 224 (580)
+...|++++|...|+++.+. +..+|..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44555566666666555431 334555666666666666666666666655321111 134455566666666666
Q ss_pred HHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC--------hHHHHHHHHHHHhcCChHHHHHHH
Q 046803 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN--------VIAWTAMISGYGMHGYGTEAVELF 296 (580)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~ 296 (580)
+|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666666543 3455566666666666666666666666664311 123455667777888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC
Q 046803 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG--VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374 (580)
Q Consensus 297 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 374 (580)
+++.+.. +.+...+..+...+.+.|++++|.++|+++.+. .|+ ...++.++.+|.+.|++++|.+.++++....
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8887642 223456667777888888888888888888743 233 4567788888999999999999997777777
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHh---cCChhHHHHHHHHHHhCCCccCCce
Q 046803 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL---AGRMDRVEVVRNIMIQKGLKKHVGY 448 (580)
Q Consensus 375 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 448 (580)
|+...+..++..+.+.|++++|...++++++..|+++ .+..+...+.. .|+.+++..++++|.++++.++|.+
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 8777778888888999999999999999988888765 45555555543 5689999999999999888888863
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=1.3e-18 Score=198.25 Aligned_cols=377 Identities=10% Similarity=0.001 Sum_probs=251.1
Q ss_pred ccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCC-ChhhHH------------HHHHH
Q 046803 52 DAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP-SNYTFS------------AVIKS 115 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~------------~ll~a 115 (580)
..+++++|...|++..+ .+...+..+...|.+.|++++|+..|++..+..... +...+. .....
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 55566666666654432 244555555556666666666666666555432111 100010 11223
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhH------------------
Q 046803 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--K-SVVA------------------ 174 (580)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~------------------ 174 (580)
+.+.|++++|...++++++.. +.+...+..+..+|...|++++|++.|++..+ | +...
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence 345556666666666555543 23344455555556666666666655555432 1 1222
Q ss_pred ------------------------HHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhCCChHHHHHH
Q 046803 175 ------------------------WNSMISGYEQNGFAKEAIGLFNLMRDFGVNP-DSTTCVCVLAACAQLGDIDLGRWV 229 (580)
Q Consensus 175 ------------------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~ 229 (580)
+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++|...
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 223444556678888888888887764 34 345666777778888888888888
Q ss_pred HHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCC----Ch---------HHHHHHHHHHHhcCChHHHHHHH
Q 046803 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL----NV---------IAWTAMISGYGMHGYGTEAVELF 296 (580)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~~~ 296 (580)
++.+.+.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+.++|+.++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 88877654 345555555555667778888888888776531 11 11224456678888899998887
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 297 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
+. .+++...+..+...+.+.|+.++|...|+.+.+. -+.+...+..++.+|...|++++|++.++..+...|+
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 72 2344556677888899999999999999999853 2235788889999999999999999999877777774
Q ss_pred -HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc------hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 377 -PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG------HYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 377 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
..++..+..++...|++++|.+.++++++..|+++. .+..++.++...|++++|.+.+++...
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677888888999999999999999999988765543 566678999999999999999998754
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=3.4e-19 Score=203.05 Aligned_cols=437 Identities=10% Similarity=0.035 Sum_probs=294.1
Q ss_pred hhhhchHHHHHhccCChhHHHHHHccCC----CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046803 40 RSMLTKLLSLVCDAGFITYAQRIFFCIP----SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115 (580)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 115 (580)
...+...+..+-....++.|...++... .|+... ......+...|++++|+..|++.++... .+...+..+..+
T Consensus 235 ~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~ 312 (1157)
T PRK11447 235 VAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQA 312 (1157)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4456666644433335667777776533 233221 2345667889999999999999988532 266778888899
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCch-H------------HHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHH
Q 046803 116 CAHLSILNLGRAVHCHVFVSGYDSDL-H------------VQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMI 179 (580)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~g~~~~~-~------------~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li 179 (580)
+.+.|++++|...++++++....... . ....+...+.+.|++++|+..|++..+ .+...+..+.
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg 392 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLG 392 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999987543221 1 112346678899999999999998865 3566888899
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHH-----------------------------------------
Q 046803 180 SGYEQNGFAKEAIGLFNLMRDFGVNPD-STTCVCVLAAC----------------------------------------- 217 (580)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~----------------------------------------- 217 (580)
..+...|++++|++.|++..+. .|+ ...+..+...+
T Consensus 393 ~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~ 470 (1157)
T PRK11447 393 DVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEA 470 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999875 343 33443333333
Q ss_pred -HhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHH
Q 046803 218 -AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAV 293 (580)
Q Consensus 218 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 293 (580)
...|++++|.+.+++.++.. +.+..++..+...|.+.|++++|...|+++.+ .+...+..+...+...++.++|+
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 34456666666666665553 33455555566666666666666666665532 23334444444455566666666
Q ss_pred HHHHHHHhCCCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 046803 294 ELFHRMRAHGVRPNNV---------TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 294 ~~~~~m~~~g~~pd~~---------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 364 (580)
..++++......++.. .+..+...+...|+.++|..+++. .+++...+..+...+.+.|++++|+
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 6665543321111111 122344556677777777777651 1235566778999999999999999
Q ss_pred HHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 365 KFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 365 ~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
+.|++.+...|+ +..+..++..+...|++++|++.++++.+..|+++..+..++.++...|++++|.++++++......
T Consensus 624 ~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 624 AAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 999989988884 8889999999999999999999999999999999999999999999999999999999999875432
Q ss_pred cCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccCCc
Q 046803 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPES 493 (580)
Q Consensus 444 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 493 (580)
..+......+- .....-....++.+++...+++. |...|+.|..
T Consensus 704 ~~~~~~~a~~~---~~~a~~~~~~G~~~~A~~~y~~A---l~~~~~~~~~ 747 (1157)
T PRK11447 704 QPPSMESALVL---RDAARFEAQTGQPQQALETYKDA---MVASGITPTR 747 (1157)
T ss_pred CCcchhhHHHH---HHHHHHHHHcCCHHHHHHHHHHH---HhhcCCCCCC
Confidence 22211000000 00001123456667776666655 4455666543
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=3.2e-19 Score=181.26 Aligned_cols=282 Identities=15% Similarity=0.140 Sum_probs=187.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCC-C------hhHHHHHHHHHHhCCChhHH
Q 046803 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK-S------VVAWNSMISGYEQNGFAKEA 191 (580)
Q Consensus 119 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~------~~~~~~li~~~~~~g~~~~A 191 (580)
.|++++|...+.++++.+ +.+..++..+...|...|++++|..+++.+... + ...+..++..|.+.|++++|
T Consensus 48 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred cCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 344444444444444432 122334444444444444444444444443321 0 12345555555555555555
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc----HHHhhHHhhHhhhcCCHHHHHHHHHh
Q 046803 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN----VVLATSLINMYARCGNVSKAREIFDM 267 (580)
Q Consensus 192 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~ 267 (580)
+.+|+++.+.. +++..++..++..+...|++++|.+.+..+.+.+..+. ...+..+...|.+.|++++|.+.|++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55555555431 23344555555555566666666666655555432211 12345566777788888888888887
Q ss_pred ccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH
Q 046803 268 MSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344 (580)
Q Consensus 268 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 344 (580)
+.+ .+...+..+...|.+.|++++|.++|+++.+.+..+...++..+..+|...|++++|...++.+.+. .|+.
T Consensus 206 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~ 282 (389)
T PRK11788 206 ALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGA 282 (389)
T ss_pred HHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCc
Confidence 764 2355777888899999999999999999987533222456788889999999999999999998753 4676
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHh
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM---HKNFDLGVEVAEHLLS 405 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 405 (580)
..+..++..+.+.|++++|..++++++...|+...++.++..+.. .|+.+++...++++++
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 677889999999999999999998888889998889888877664 5689999999998885
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=3.3e-18 Score=182.64 Aligned_cols=367 Identities=9% Similarity=-0.047 Sum_probs=287.7
Q ss_pred ccCChhHHHHHHccCCC------CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHH
Q 046803 52 DAGFITYAQRIFFCIPS------PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 125 (580)
+..+++.---.|..-++ .+..-.-.++..+.+.|++++|+.+++..+.....+ ...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 66667666666766654 122334456778889999999999999998864443 34455555667779999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 046803 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202 (580)
Q Consensus 126 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 202 (580)
...++.+++.. +.+...+..+...+...|++++|...|++... | +...|..+...+...|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999999875 45677888899999999999999999998765 3 56789999999999999999999999887653
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHH
Q 046803 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAM 279 (580)
Q Consensus 203 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 279 (580)
|+.......+..+...|++++|...+..+++....++......+...+.+.|++++|...|++..+ .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 333322222345788999999999999988775334455556667889999999999999998764 456788889
Q ss_pred HHHHHhcCChHH----HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHH
Q 046803 280 ISGYGMHGYGTE----AVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDL 353 (580)
Q Consensus 280 i~~~~~~g~~~~----A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 353 (580)
...|.+.|++++ |+..|++..+. .|+ ...+..+...+...|++++|...+++..+. .| +...+..+..+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 999999999986 89999999884 454 467888888999999999999999998753 45 46677778999
Q ss_pred HHHcCCHHHHHHHHHhHcCCCCCHHH-HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 046803 354 FGRAGLLNEAYKFVKDVIGEKPAPAV-WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 432 (580)
|.+.|++++|.+.+++.+...|+... +..+..++...|+.++|+..|+++++..|++. ...+++|..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHH
Confidence 99999999999999888878886433 44467788999999999999999999998864 234455665
Q ss_pred HHHHHHh
Q 046803 433 VRNIMIQ 439 (580)
Q Consensus 433 ~~~~m~~ 439 (580)
.+.+..+
T Consensus 396 ~~~~~~~ 402 (656)
T PRK15174 396 ALDGQIS 402 (656)
T ss_pred HHHHHHH
Confidence 5555544
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=7.3e-18 Score=180.04 Aligned_cols=326 Identities=11% Similarity=0.019 Sum_probs=270.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHh
Q 046803 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQ 184 (580)
Q Consensus 108 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~ 184 (580)
....++..+.+.|+++.|..++..++.....+ ......++......|++++|...|+++.. | +...|..+...+.+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 35566778889999999999999999886544 44455555667789999999999999865 3 56789999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHH
Q 046803 185 NGFAKEAIGLFNLMRDFGVNP-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263 (580)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 263 (580)
.|++++|+..|++..+. .| +...+..+..++...|++++|...+..+.... +.+...+..+. .+...|++++|..
T Consensus 123 ~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~~-~l~~~g~~~eA~~ 198 (656)
T PRK15174 123 SKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATCL-SFLNKSRLPEDHD 198 (656)
T ss_pred cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHcCCHHHHHH
Confidence 99999999999999875 44 45678888999999999999999999887765 33344443343 4788999999999
Q ss_pred HHHhccCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhH
Q 046803 264 IFDMMSEL----NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE----GHRVFASMR 335 (580)
Q Consensus 264 ~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~----a~~~~~~~~ 335 (580)
.++.+.+. +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++ |...|+++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99987653 23344556778899999999999999999853 2245667778889999999986 899999987
Q ss_pred HhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 336 QEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 336 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
+ ..| +...+..+...+.+.|++++|...+++.+...|+ ...+..+..++...|++++|+..++++.+.+|+++..
T Consensus 278 ~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 278 Q---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred h---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 4 345 5778899999999999999999999999988885 7778889999999999999999999999999998877
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 414 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
+..++.++...|++++|.+.+++..+...
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 77788999999999999999999877643
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.9e-17 Score=180.69 Aligned_cols=396 Identities=8% Similarity=0.013 Sum_probs=296.7
Q ss_pred ChhhhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCC-ChhhHHHHHH
Q 046803 39 SRSMLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP-SNYTFSAVIK 114 (580)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 114 (580)
++....-.+....-.|+.++|++++..... .+...+..+...+...|++++|+.+|++.+.. .| +...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 334444455566678899999999987653 44556899999999999999999999998875 34 3455667777
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChhHH
Q 046803 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQNGFAKEA 191 (580)
Q Consensus 115 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A 191 (580)
.+...|++++|...++++++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 7889999999999999998874 44555 88889999999999999999998865 3 556777788888899999999
Q ss_pred HHHHHHHHHCCCCCChh------HHHHHHHHHHhC-----CCh---HHHHHHHHHHHHc-CCCCcHH-Hh-hH---HhhH
Q 046803 192 IGLFNLMRDFGVNPDST------TCVCVLAACAQL-----GDI---DLGRWVHEFIVGQ-GLDVNVV-LA-TS---LINM 251 (580)
Q Consensus 192 ~~~~~~m~~~g~~p~~~------t~~~ll~a~~~~-----~~~---~~a~~~~~~~~~~-~~~~~~~-~~-~~---li~~ 251 (580)
++.+++... .|+.. ....++...... +.+ ++|.+.++.+.+. ...|+.. .+ .. .+..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 998887653 33320 111222222111 223 6678888888754 2222221 11 11 1234
Q ss_pred hhhcCCHHHHHHHHHhccCCC---h-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCH
Q 046803 252 YARCGNVSKAREIFDMMSELN---V-IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP---NNVTFVAVLSACAHAGLV 324 (580)
Q Consensus 252 y~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~ 324 (580)
+...|++++|+..|+.+.+.+ + ..-..+...|...|++++|+..|+++.+..... .......+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 457799999999999988632 1 122225778999999999999999987643211 124456667788999999
Q ss_pred HHHHHHHHHhHHhcC----------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhc
Q 046803 325 QEGHRVFASMRQEYG----------LLPG---VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMH 390 (580)
Q Consensus 325 ~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~ 390 (580)
++|.++++.+..... -.|+ ...+..+..++...|++++|++.+++.+...| +...+..+...+...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999875311 1122 23456678889999999999999988888888 478899999999999
Q ss_pred CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 391 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
|++++|++.++++++++|+++..+..++..+...|++++|.++++.+.+..
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998753
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=2.7e-17 Score=176.13 Aligned_cols=352 Identities=10% Similarity=0.016 Sum_probs=273.5
Q ss_pred HHhccCChhHHHHHHccCC--CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCChHHH
Q 046803 49 LVCDAGFITYAQRIFFCIP--SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP-SNYTFSAVIKSCAHLSILNLG 125 (580)
Q Consensus 49 ~~~~~~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a 125 (580)
.+.+.++++.|.+.|+... .|+...|..+..+|.+.|++++|++.++..++. .| +...+..+..++...|++++|
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3347789999999998754 377788888889999999999999999998875 34 445677788888899999888
Q ss_pred HHHHHHHHHhCC-----------------------------CCchHHHHHH-----------------------------
Q 046803 126 RAVHCHVFVSGY-----------------------------DSDLHVQAAL----------------------------- 147 (580)
Q Consensus 126 ~~~~~~~~~~g~-----------------------------~~~~~~~~~l----------------------------- 147 (580)
..-+..+...+. +++...+..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (615)
T TIGR00990 214 LLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNG 293 (615)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccc
Confidence 765544322210 0000000000
Q ss_pred -HHHH------HhCCCHHHHHHHHccCCCC------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHH
Q 046803 148 -VNFY------AKSNNVDVARKVFDRMPDK------SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD-STTCVCV 213 (580)
Q Consensus 148 -i~~y------~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 213 (580)
+..+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++..+. .|+ ...|..+
T Consensus 294 ~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~l 371 (615)
T TIGR00990 294 QLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKR 371 (615)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 1111 1235788999999877542 4467888999999999999999999999875 455 5588888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChH
Q 046803 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGT 290 (580)
Q Consensus 214 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 290 (580)
...+...|++++|...+..+++.. +.+..++..+..+|...|++++|...|++..+ .+...|..+...+.+.|+++
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHH
Confidence 899999999999999999998875 66788999999999999999999999998874 35677888899999999999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--H------HHHHHHHHHHHHcCCHH
Q 046803 291 EAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG--V------EHHVCMVDLFGRAGLLN 361 (580)
Q Consensus 291 ~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~------~~~~~li~~~~~~g~~~ 361 (580)
+|+..|++..+. .|+ ...+..+..++...|++++|...|+...+. .|+ . ..++.....+...|+++
T Consensus 451 eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 451 SSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 999999999874 444 577888889999999999999999998742 332 1 11222223344579999
Q ss_pred HHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 362 EAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 362 ~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
+|.+++++.+...|+ ...+..+...+...|++++|+..|+++.++.+..
T Consensus 526 eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 526 EAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 999999888888886 5678999999999999999999999999987653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=2.8e-16 Score=171.44 Aligned_cols=396 Identities=9% Similarity=-0.021 Sum_probs=300.2
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccC---CCCChhhHHHHHHHHHcCCCc
Q 046803 11 YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI---PSPDSFLFNTLIIRNSKANFS 87 (580)
Q Consensus 11 ~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~ 87 (580)
|+.+..--++.+.+.+++....... ..+...+..+...+.+.+++++|.++|+.. .+.+...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 5556656677777777777776522 233445777777788999999999999984 344677788899999999999
Q ss_pred cHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccC
Q 046803 88 TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167 (580)
Q Consensus 88 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 167 (580)
++|+..+++..+. .|+...+..+..++...|+.++|...++++++.. +.+...+..+..++...|..+.|.+.++..
T Consensus 100 ~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 9999999999876 3433337777788889999999999999999986 345666677888999999999999999987
Q ss_pred CCCChh--------HHHHHHHHHH-----hCCCh---hHHHHHHHHHHHC-CCCCChh-HHH----HHHHHHHhCCChHH
Q 046803 168 PDKSVV--------AWNSMISGYE-----QNGFA---KEAIGLFNLMRDF-GVNPDST-TCV----CVLAACAQLGDIDL 225 (580)
Q Consensus 168 ~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~~~~~ 225 (580)
.. +.. ....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|++++
T Consensus 177 ~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 177 NL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred CC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 76 211 2222233222 22234 7789999998864 2233322 111 11345567799999
Q ss_pred HHHHHHHHHHcCCC-CcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC-------hHHHHHHHHHHHhcCChHHHHHHHH
Q 046803 226 GRWVHEFIVGQGLD-VNVVLATSLINMYARCGNVSKAREIFDMMSELN-------VIAWTAMISGYGMHGYGTEAVELFH 297 (580)
Q Consensus 226 a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~ 297 (580)
|+..|+.+.+.+.+ |+ .....+...|...|++++|+..|+++.+.+ ...+..+..++...|++++|..+++
T Consensus 256 A~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 256 VISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999999987632 22 222335778999999999999999876422 2346667778899999999999999
Q ss_pred HHHhCCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046803 298 RMRAHGV-----------RPNN---VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 298 ~m~~~g~-----------~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 363 (580)
++..... .|+. ..+..+...+...|+.++|.+.++++... .+.+...+..+..++...|++++|
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 9987421 2332 24456677888999999999999999753 334578889999999999999999
Q ss_pred HHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 364 YKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 364 ~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
++.+++++...|+ ...+..++..+...|++++|+.+++++++..|+++.+.
T Consensus 413 ~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 413 ENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999996 67788888899999999999999999999999987543
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=6.6e-16 Score=168.81 Aligned_cols=421 Identities=11% Similarity=0.029 Sum_probs=273.7
Q ss_pred CCCHHHHHHHHhcCCCCchHHHHHHHHHHhCCCCChhhhchHHHH--------HhccCChhHHHHHHccCCCC--ChhhH
Q 046803 5 QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--------VCDAGFITYAQRIFFCIPSP--DSFLF 74 (580)
Q Consensus 5 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~--------~~~~~~~~~A~~~f~~~~~~--~~~~~ 74 (580)
.|+...|..+|......+.+..++..+++.... +..++..+... |.+......|++ .+...| +....
T Consensus 108 dP~n~~~~~~La~i~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL 184 (987)
T PRK09782 108 HPGDARLERSLAAIPVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTL 184 (987)
T ss_pred CcccHHHHHHHHHhccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHH
Confidence 455555555555555556666677777665322 23333333322 333333344444 222223 33333
Q ss_pred HH-HHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 046803 75 NT-LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH-LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYA 152 (580)
Q Consensus 75 ~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 152 (580)
.. +...|.+.|++++|++++.++.+.+.. +..-...+-.++.. .++ +.+..++.. .+..++.+...+++.|.
T Consensus 185 ~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi 258 (987)
T PRK09782 185 RTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALA 258 (987)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHH
Confidence 33 377888888888888888888887533 33334555556665 355 666666442 33467888889999999
Q ss_pred hCCCHHHHHHHHccCCC-----CChhHH-------------------------------------------H--------
Q 046803 153 KSNNVDVARKVFDRMPD-----KSVVAW-------------------------------------------N-------- 176 (580)
Q Consensus 153 ~~g~~~~A~~~f~~~~~-----~~~~~~-------------------------------------------~-------- 176 (580)
+.|+.++|.+++++++. ++..+| .
T Consensus 259 ~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (987)
T PRK09782 259 YRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLAT 338 (987)
T ss_pred HCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 99999999999988752 000000 0
Q ss_pred ------------------------------------------HHHHHHHhCCChhHHHHHHHHHHHC-C-CCCChhHHHH
Q 046803 177 ------------------------------------------SMISGYEQNGFAKEAIGLFNLMRDF-G-VNPDSTTCVC 212 (580)
Q Consensus 177 ------------------------------------------~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ 212 (580)
-+....+++|+.++|.++|+..... + -.++......
T Consensus 339 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 418 (987)
T PRK09782 339 LPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMAR 418 (987)
T ss_pred CCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHH
Confidence 0000123456666666666655431 0 0111111212
Q ss_pred HHHHHHhC---------------------------------------------------------------CChHHHHHH
Q 046803 213 VLAACAQL---------------------------------------------------------------GDIDLGRWV 229 (580)
Q Consensus 213 ll~a~~~~---------------------------------------------------------------~~~~~a~~~ 229 (580)
++..+... +..++|...
T Consensus 419 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a 498 (987)
T PRK09782 419 LASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYA 498 (987)
T ss_pred HHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHH
Confidence 23333222 344445554
Q ss_pred HHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 046803 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307 (580)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 307 (580)
+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.. |+
T Consensus 499 ~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~ 574 (987)
T PRK09782 499 WLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LG 574 (987)
T ss_pred HHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Cc
Confidence 44444432 3333333344445678888888888876653 444556667777888888888888888887743 44
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHH
Q 046803 308 NV-TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLG 385 (580)
Q Consensus 308 ~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~ 385 (580)
.. .+..+.......|++++|...+++..+ ..|+...+..+..++.+.|++++|++.+++.+...|+ ...+..+..
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 32 333334445566999999999998874 4577888999999999999999999999999988995 778888889
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
++...|++++|+..++++++..|+++..+..++.+|...|++++|...+++..+..
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999997754
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=2.2e-15 Score=161.48 Aligned_cols=387 Identities=9% Similarity=-0.002 Sum_probs=260.0
Q ss_pred HHhccCChhHHHHHHccCCC--CCh-hhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhh-HH--HHHHHHHccCCh
Q 046803 49 LVCDAGFITYAQRIFFCIPS--PDS-FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYT-FS--AVIKSCAHLSIL 122 (580)
Q Consensus 49 ~~~~~~~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~--~ll~a~~~~~~~ 122 (580)
..++.|+++.|+..|++..+ |+. .....++..+...|+.++|+..+++.. .|+... +. .+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 34566677777777776654 322 112266666666777777777777765 222222 22 223355566777
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCCh--hHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046803 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV--VAWNSMISGYEQNGFAKEAIGLFNLMRD 200 (580)
Q Consensus 123 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 200 (580)
+.|.++++++++... .++.++..++..|...++.++|++.++++...+. ..+..++..+...++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 777777777776652 3355555666777777777777777777665333 2332232233334455457777777766
Q ss_pred CCCCCChhHHHHHHHHHHhCCChHHHHH------------------------------------------------HHHH
Q 046803 201 FGVNPDSTTCVCVLAACAQLGDIDLGRW------------------------------------------------VHEF 232 (580)
Q Consensus 201 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~------------------------------------------------~~~~ 232 (580)
.. +-+...+.....+..+.|-...|.+ -++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 42 2233344444444444443333322 2223
Q ss_pred HHHc-C-CCCcHHH-hhH---HhhHhhhcCCHHHHHHHHHhccCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046803 233 IVGQ-G-LDVNVVL-ATS---LINMYARCGNVSKAREIFDMMSEL----NVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302 (580)
Q Consensus 233 ~~~~-~-~~~~~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 302 (580)
+... + .|+.... ..+ -+-++.+.|+..++++.|+.+... ...+--+...+|...+++++|+.+|+++...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 2321 1 1222122 222 234567789999999999999842 2345567889999999999999999998764
Q ss_pred C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC----------CCCC---HHHHHHHHHHHHHcCCHHHHH
Q 046803 303 G-----VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG----------LLPG---VEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 303 g-----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~ 364 (580)
. ..++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 3 122334457888999999999999999999976211 0122 344556778889999999999
Q ss_pred HHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 365 KFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 365 ~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+.+++.+...| |...+..+...+...|.+.+|++.++.+..++|++..+...++..+...|+|++|.++.+.+.+..
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99988888888 789999999999999999999999999999999999999999999999999999999998887653
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=5.4e-15 Score=161.73 Aligned_cols=406 Identities=10% Similarity=-0.036 Sum_probs=296.2
Q ss_pred chHHHHHHHHHHhCCCCChhhhchH-HHHHhccCChhHHHHHHccCCCC---ChhhHHHHHHHHHcC-CCccHHHHHHHH
Q 046803 22 KPLQQVHAHLIVAGYGRSRSMLTKL-LSLVCDAGFITYAQRIFFCIPSP---DSFLFNTLIIRNSKA-NFSTDSLLFYRR 96 (580)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~~~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~-g~~~~A~~~~~~ 96 (580)
+.+..... .......|++.+...+ .+.|..++++++|.+.+.++.+. +..-+..|-..|.++ ++ +++..+++.
T Consensus 164 eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~ 241 (987)
T PRK09782 164 PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ 241 (987)
T ss_pred HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch
Confidence 44444444 3333344455555555 77888999999999999988752 334466677788873 66 788888653
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCC-CchH------------------------------HHH
Q 046803 97 MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLH------------------------------VQA 145 (580)
Q Consensus 97 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~------------------------------~~~ 145 (580)
.++-|......+...+.+.|+.++|.+++..+...-.. |... ..-
T Consensus 242 ----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (987)
T PRK09782 242 ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVG 317 (987)
T ss_pred ----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHH
Confidence 23457788889999999999999999998754322110 1100 011
Q ss_pred HHHHHHHhC---------------------------------------------------------------CCHHHHHH
Q 046803 146 ALVNFYAKS---------------------------------------------------------------NNVDVARK 162 (580)
Q Consensus 146 ~li~~y~~~---------------------------------------------------------------g~~~~A~~ 162 (580)
.++..+.+. |+.++|.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~ 397 (987)
T PRK09782 318 ATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAAD 397 (987)
T ss_pred HHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 113333333 33444444
Q ss_pred HHccCCC--------------------------------------------------------------------C--Ch
Q 046803 163 VFDRMPD--------------------------------------------------------------------K--SV 172 (580)
Q Consensus 163 ~f~~~~~--------------------------------------------------------------------~--~~ 172 (580)
+|++.-. + +.
T Consensus 398 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~ 477 (987)
T PRK09782 398 LLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDA 477 (987)
T ss_pred HHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCH
Confidence 4432211 0 12
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 252 (580)
..|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...+..+... +|+...+..+...+
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 233444444444 5666788777766653 466555555556667899999999999998665 44455566778889
Q ss_pred hhcCCHHHHHHHHHhccCCChHHHH---HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046803 253 ARCGNVSKAREIFDMMSELNVIAWT---AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 329 (580)
.+.|+.++|...|++..+.++..++ .+.......|++++|+..|++..+ ..|+...+..+..++.+.|+.++|..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999988764333333 333344456999999999999998 46778889999999999999999999
Q ss_pred HHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 330 VFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 330 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
.|++... ..| +...+..+..++...|++++|++.+++++...|+ +..+..+..++...|++++|+..+++++++.
T Consensus 631 ~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 631 DLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999974 345 5778888999999999999999999999988884 8889999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 408 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
|++..+....+....+..+++.|.+.+++....++.
T Consensus 708 P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 708 DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999988887665554
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=4.8e-14 Score=151.32 Aligned_cols=356 Identities=12% Similarity=0.048 Sum_probs=274.7
Q ss_pred HHHHHcCCCccHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Q 046803 78 IIRNSKANFSTDSLLFYRRMIVSNISPSN--YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155 (580)
Q Consensus 78 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 155 (580)
+-...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++.+.. -+.......++...|...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 34567899999999999999875 4553 233 7777888889999999999998821 1222334444467899999
Q ss_pred CHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHH
Q 046803 156 NVDVARKVFDRMPDK---SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232 (580)
Q Consensus 156 ~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 232 (580)
++++|.++|+++.+. +...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|.+.+++
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999998763 5567778889999999999999999999874 56766665554444456666669999999
Q ss_pred HHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC------------------------------------------
Q 046803 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE------------------------------------------ 270 (580)
Q Consensus 233 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------------------------------------ 270 (580)
+.+.. |.+...+..++....+.|-...|.++..+-+.
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 99886 66777777777777777776666665543320
Q ss_pred -----------CCh-HHH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 271 -----------LNV-IAW----TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 271 -----------~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
|.. ..| --.+-++...|+..++++.|+.|...+.+....+-..+..+|...+.+++|..+|+.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 110 011 1234467788999999999999998886644557889999999999999999999998
Q ss_pred HHhcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC-------------C--C-HHHHHHHHHHHHhcCCch
Q 046803 335 RQEYG----LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK-------------P--A-PAVWTAMLGACKMHKNFD 394 (580)
Q Consensus 335 ~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------p--~-~~~~~~ll~~~~~~g~~~ 394 (580)
....+ ..++......|.-+|...+++++|..++++..... | | ......++..+...|+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 76432 23345556789999999999999999997666322 2 2 234556677889999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 395 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+|++.+++++...|.|+.....+++++...|...+|.+.++.....
T Consensus 434 ~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 434 TAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999777654
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.66 E-value=5.2e-13 Score=137.53 Aligned_cols=113 Identities=11% Similarity=-0.000 Sum_probs=52.7
Q ss_pred ChhhhchHHHHHhccCChhHHHHHHccCCCCC------hhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhH--H
Q 046803 39 SRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD------SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTF--S 110 (580)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~ 110 (580)
|+.+.|.|-+.|.-.++++.+..+...+...+ ..+|-.+..+|-..|++++|...|.+..+. .||.+++ .
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~ 346 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLV 346 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccccc
Confidence 44555555555555555555555444333211 123444555555555555555555444432 2333222 2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Q 046803 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154 (580)
Q Consensus 111 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 154 (580)
-+.+.+...|+++.+...|+.+.+.. +.+..+...|...|+..
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHS 389 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhh
Confidence 33444555555555555555555442 33334444444444444
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=5.6e-12 Score=124.45 Aligned_cols=411 Identities=9% Similarity=0.065 Sum_probs=330.2
Q ss_pred CCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHH
Q 046803 20 RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRR 96 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 96 (580)
..++++-+..+.++.- ..+..+|.+|- +.-.++.|.+++....+ .+...|-+-...--.+|+.+....+..+
T Consensus 391 ~~~darilL~rAvecc-p~s~dLwlAla----rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 391 EPEDARILLERAVECC-PQSMDLWLALA----RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred ChHHHHHHHHHHHHhc-cchHHHHHHHH----HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456777777776642 33455665555 77788899999876543 5777888877777888998888888765
Q ss_pred ----HHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHccCCC-
Q 046803 97 ----MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD--LHVQAALVNFYAKSNNVDVARKVFDRMPD- 169 (580)
Q Consensus 97 ----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~- 169 (580)
+...|+..+...|..=..+|-..|..-.+..+...++..|+... ..+|+.-...|.+.+.++-|+.+|....+
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 45678999999999999999999999999999999988887543 45888888999999999999999987765
Q ss_pred --CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhH
Q 046803 170 --KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247 (580)
Q Consensus 170 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 247 (580)
.+...|...+..--..|..++-..+|++.... .+-....|.....-.-..|++..|+.++.++.+.. +.+..+|-+
T Consensus 546 fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwla 623 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLA 623 (913)
T ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 35678888888777889999999999999876 34455566666666777899999999999999886 558889999
Q ss_pred HhhHhhhcCCHHHHHHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCH
Q 046803 248 LINMYARCGNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAHAGLV 324 (580)
Q Consensus 248 li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~ 324 (580)
-+..-+....++.|+.+|.+... ++...|.--+...-..++.++|++++++.++ .-|+. ..|..+...+-+.+++
T Consensus 624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHH
Confidence 99999999999999999998764 6777888777777788999999999999887 45665 4677777888899999
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 325 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
+.|...|..-.+ ..+..+..|-.|.+.=-+.|.+-.|..++++..-..| +...|...+..-.+.|+.+.|..+..++
T Consensus 702 e~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998876553 2333577888888888889999999999988776677 5888999999999999999999999988
Q ss_pred HhcCCCC------------------------------cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 404 LSVEPEN------------------------------PGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 404 ~~~~p~~------------------------------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
++--|.+ +......+.++....+++.|.+.|.+..+.+
T Consensus 780 LQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 780 LQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8765554 3444566777888888888888888887754
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=9e-12 Score=117.17 Aligned_cols=289 Identities=13% Similarity=0.185 Sum_probs=177.9
Q ss_pred HHHHHHhc--CCCCchHHHHHHHHHHhCCCCChhhhchHHHH--HhccCC-------------------------hhHHH
Q 046803 10 AYEAILKA--GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGF-------------------------ITYAQ 60 (580)
Q Consensus 10 ~~~~ll~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~~~-------------------------~~~A~ 60 (580)
|=+.|++- .+.++++.-++.+|...|.+.+..+--.|++. |.+..+ -+-|.
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 34445443 34568888899999988888777776666532 222221 11233
Q ss_pred HHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc
Q 046803 61 RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140 (580)
Q Consensus 61 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 140 (580)
-+|+..| ++..++..||.++++-...+.|.+++++-.....+.+..+||.++.+-.- ..++++..+|+...+.||
T Consensus 198 L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCc
Confidence 3344333 45568889999999988899999999998887788888999998877443 334788888988888999
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHcc----CC----CCChhHHHHHHHHHHhCCChhH-HHHHHHHHHHC----CCC---
Q 046803 141 LHVQAALVNFYAKSNNVDVARKVFDR----MP----DKSVVAWNSMISGYEQNGFAKE-AIGLFNLMRDF----GVN--- 204 (580)
Q Consensus 141 ~~~~~~li~~y~~~g~~~~A~~~f~~----~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~~--- 204 (580)
..++|+++.+.++.|+++.|++.+-+ |. +|...+|..+|..+.+-++..+ |..++.++... .++
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 99999999999999988877655433 32 3566666666666666666543 33333443321 122
Q ss_pred C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCc---HHHhhHHhhHhhhcCCHHHHHHHHHhccC----CC
Q 046803 205 P-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG----LDVN---VVLATSLINMYARCGNVSKAREIFDMMSE----LN 272 (580)
Q Consensus 205 p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~ 272 (580)
| |..-|...+..|.+..+.+.|.+++..+.... +.|+ ..-|..+....++...++.-...|+.|.. |+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 2 33456666666666666666666665554221 1221 12333444445555555555555555542 34
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 303 (580)
..+-..++.+..-.|.++-.-++|..+...|
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 4444444555555555555555555555443
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=6.9e-16 Score=148.68 Aligned_cols=258 Identities=17% Similarity=0.182 Sum_probs=111.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH-HHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhc
Q 046803 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC-VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255 (580)
Q Consensus 177 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 255 (580)
.+...+.+.|++++|++++++......+|+...| ..+...+...++.+.|.+.++.+.+.+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 3456667778888888888654443223444433 334445566778888888888888765 3366667777777 688
Q ss_pred CCHHHHHHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046803 256 GNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFA 332 (580)
Q Consensus 256 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 332 (580)
+++++|.+++...-+ ++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888876643 566677888888999999999999999987533 34566677788888999999999999999
Q ss_pred HhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 333 SMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK-PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 333 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
+..+. .| +......++..+...|+.+++.++++...... .|+..|..+..++...|+.++|...++++.+.+|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99853 46 47788889999999999999888885444332 356678899999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 411 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+.....++.++...|+.++|.+++++..+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887643
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=1.5e-12 Score=122.98 Aligned_cols=202 Identities=13% Similarity=0.166 Sum_probs=149.0
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc---CCChHHHHHHHHHHHhcCChHHHHHHHH
Q 046803 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS---ELNVIAWTAMISGYGMHGYGTEAVELFH 297 (580)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 297 (580)
|++++|...+.+.+...-.-....|| +.-.+-+.|++++|.+.|-++. ..++...-.+.+.|-...+..+|++++.
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 56666666666666544222222333 2334566777777777776654 3555666666777777778888888876
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCH
Q 046803 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377 (580)
Q Consensus 298 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 377 (580)
+.... ++.|......|...|-+.|+-.+|.+.+-.--+ -++.+.++...|..-|....-.++|+.+|+++.-+.|+.
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 66542 344556777788888888888888887655432 344467787778888888888899999998888889999
Q ss_pred HHHHHHHHHH-HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 378 AVWTAMLGAC-KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 378 ~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
.-|..++..| ++.|+++.|..+|+...+..|.|......|..++...|.
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999888776 678999999999999999999999999999998887775
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.61 E-value=3.8e-12 Score=131.26 Aligned_cols=382 Identities=10% Similarity=0.028 Sum_probs=248.6
Q ss_pred ChhHHHHHHccCC---CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCC--CChhhHHHHHHHHHccCChHHHHHHH
Q 046803 55 FITYAQRIFFCIP---SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS--PSNYTFSAVIKSCAHLSILNLGRAVH 129 (580)
Q Consensus 55 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~ 129 (580)
.+..+...+...- ..|++..|.|.+-|.-.|++..++.+...+...... .-..+|-.+.+++-..|+++.|.+.|
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3444444444322 357777888888888888888888888887664311 12234667778888889999998888
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCC----ChhHHHHHHHHHHHCC
Q 046803 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQNG----FAKEAIGLFNLMRDFG 202 (580)
Q Consensus 130 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g 202 (580)
.+..+.....-...+--|..+|.+.|+++.|...|+.+.. | +..+...|...|+..+ ..++|..++.+..+.-
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 8877664322233445577888899999999888888754 3 4456666777777664 4566666666665542
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHHHHH----HcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-------C
Q 046803 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV----GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-------L 271 (580)
Q Consensus 203 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~ 271 (580)
+.|...|..+...+.... ...+...+..+. ..+-++.+.+.|.+...+...|++.+|...|..... +
T Consensus 411 -~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 411 -PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred -cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 345667777766665443 333355554433 445567788889999999999999999998887652 2
Q ss_pred Ch------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH
Q 046803 272 NV------IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344 (580)
Q Consensus 272 ~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 344 (580)
|. .+--.+...+-..++.+.|.+.|....+. .|.-+ .|..++......+...+|...++.... ....++
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np 564 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNP 564 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCc
Confidence 22 12223455555667788888888888773 45543 344444333345677777777777765 333444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhHc---CCCCCHHHHHHHHHHHHh------------cCCchHHHHHHHHHHhcCCC
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDVI---GEKPAPAVWTAMLGACKM------------HKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p~ 409 (580)
..++-+.+.+.+...+..|.+-|+... ...+|+.+.-+|...|.+ .+..++|+++|.++++.+|.
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk 644 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK 644 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc
Confidence 455556667777777766666442111 223566666666665532 23467778888888888888
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 410 NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 410 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
|..+-+-++-+++..|++.+|..+|...++...
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 877777788888888888888888888877543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=5.9e-12 Score=129.08 Aligned_cols=329 Identities=10% Similarity=0.103 Sum_probs=246.0
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccC---CCCChhHHHHHHHHHHhCCChhHHHHH
Q 046803 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM---PDKSVVAWNSMISGYEQNGFAKEAIGL 194 (580)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~ 194 (580)
..|++++|..++.++++.. +.....|.+|...|-..|+.+++...+--. ...|..-|..+.....+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3499999999999999886 556778888999999999999988766433 335778899999999999999999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhh----HHhhHhhhcCCHHHHHHHHHhccC
Q 046803 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT----SLINMYARCGNVSKAREIFDMMSE 270 (580)
Q Consensus 195 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~y~~~g~~~~A~~~~~~~~~ 270 (580)
|.+.++.. +++...+---...|-+.|+...|..-+.++.+...+.|..-.- ..+..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99988763 4455555566777888899999999998888875333333232 345566777777888888876653
Q ss_pred -----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---------------------------CHHHHHHHHHHH
Q 046803 271 -----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP---------------------------NNVTFVAVLSAC 318 (580)
Q Consensus 271 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------------------------d~~t~~~ll~a~ 318 (580)
-+...++.++..|.+..+++.|......+......+ +... .-+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 344577888888888888999988888776622222 2222 1222234
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC--CHHHHHHHHHHHHhcCCch
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLP--GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP--APAVWTAMLGACKMHKNFD 394 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~ 394 (580)
.+....+....+.....++ .+.| +...|.-+.++|...|++.+|+.++.......+ +..+|..+...|...|.++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 4445444444444444433 5434 578899999999999999999999955554444 4678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 046803 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450 (580)
Q Consensus 395 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 450 (580)
+|++.|++++...|++..+-..|+.+|.+.|+.++|.+++..+..-+-...+++.|
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999876333222344444
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=2.5e-12 Score=129.77 Aligned_cols=276 Identities=11% Similarity=0.084 Sum_probs=185.7
Q ss_pred CCCHHHHHHHHccCCCC--C-hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHH--HHHHHHHhCCChHHHHH
Q 046803 154 SNNVDVARKVFDRMPDK--S-VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV--CVLAACAQLGDIDLGRW 228 (580)
Q Consensus 154 ~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 228 (580)
.|+++.|++.+...++. + ...|........+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777765542 1 223333334446778888888888877653 45543332 23456677788888888
Q ss_pred HHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC---h--------HHHHHHHHHHHhcCChHHHHHHHH
Q 046803 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN---V--------IAWTAMISGYGMHGYGTEAVELFH 297 (580)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~~~~ 297 (580)
.++.+.+.. |.+..+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888877775 5567777777888888888888887777776421 1 123333333334445556666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-
Q 046803 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA- 376 (580)
Q Consensus 298 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~- 376 (580)
.+.+. .+.+......+..++...|+.++|.++++...+ ..|+.... ++.+....++.+++++.+++.....|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65442 234566777778888888888888888877764 23444222 223333558888888888777777774
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 377 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+..+..+...|...+++++|.+.|+++++..|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6667788888888888888888888888888874 5567888888888888888888876543
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2e-11 Score=116.35 Aligned_cols=387 Identities=14% Similarity=0.140 Sum_probs=295.5
Q ss_pred ChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 046803 55 FITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131 (580)
Q Consensus 55 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 131 (580)
++..|+.+|++... ++...|---+..-.++.....|..++++.+..=.+.|..-|. -+-.=-..|++..|+++|..
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHHHHH
Confidence 78889999998664 778889888999999999999999999988754444444332 22233457999999999998
Q ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCC--CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-
Q 046803 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST- 208 (580)
Q Consensus 132 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 208 (580)
-.. ..|+...|++.|++=.+-..++.|+.++++.. .|++.+|--....-.++|+...|..+|....+. -.|..
T Consensus 167 W~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~ 242 (677)
T KOG1915|consen 167 WME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEE 242 (677)
T ss_pred HHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHH
Confidence 875 48999999999999999999999999999864 589999999999999999999999999988764 22333
Q ss_pred ---HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc--HHHhhHHhhHhhhcCCHHHHHHHH--------HhccC---CC
Q 046803 209 ---TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN--VVLATSLINMYARCGNVSKAREIF--------DMMSE---LN 272 (580)
Q Consensus 209 ---t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~--------~~~~~---~~ 272 (580)
.|.+...-=.....++.|.-+|...++.= |.+ ...|..+...=-+-|+.....+.. +.+.. -|
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 34444444445678889999999988762 333 455666655555556654444332 22222 34
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHH---HhcCCHHHHHHHHHHhHHhcCCCC
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV-------TFVAVLSAC---AHAGLVQEGHRVFASMRQEYGLLP 342 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p 342 (580)
-.+|--.+..--..|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+++.+.++|+...+ -++.
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCc
Confidence 567877888888889999999999999875 666321 222222222 246889999999998874 3333
Q ss_pred CHHHHHHH----HHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHH
Q 046803 343 GVEHHVCM----VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418 (580)
Q Consensus 343 ~~~~~~~l----i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 418 (580)
...++.-+ .....|+.++..|.+++-.++|.-|...+|...|..-.+.+++|....+|++.++.+|.|-.++...+
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 44455444 34445889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 046803 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450 (580)
Q Consensus 419 ~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 450 (580)
..-...|+++.|..+|+.........-|..-|
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 99999999999999999998876554444433
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=3.4e-13 Score=133.91 Aligned_cols=244 Identities=12% Similarity=0.086 Sum_probs=129.3
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCcHHHhhHHhhHhhhcCCHHHHHHHH
Q 046803 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG--LDVNVVLATSLINMYARCGNVSKAREIF 265 (580)
Q Consensus 188 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~ 265 (580)
.++|+..|.+.... +.-.......+..+|...+++++++.+|+.+.+.. ...+..+|.+.+.-+-+.=.+.---+-+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566666553332 22222344455556666666666666666655542 1123444544443222111111101111
Q ss_pred HhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH
Q 046803 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344 (580)
Q Consensus 266 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 344 (580)
-.+....+.+|-++.+.|..+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... + .+.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~--~~~ 486 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G--VDP 486 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c--CCc
Confidence 111123445666666666666666666666666655 344 34555555555555556666666665544 2 233
Q ss_pred HHHH---HHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 345 EHHV---CMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 345 ~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
.+|+ .|...|.++++++.|+-.|++++.+.| +.+....+...+.+.|+.|+|+++++++.-++|.|+-.-+..+.+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 3333 344556666666666666666666666 344455555566666666666666666666666666666666666
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 046803 421 YALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 421 y~~~g~~~~a~~~~~~m~~ 439 (580)
+...+++++|.+.++++++
T Consensus 567 l~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHhhcchHHHHHHHHHHHH
Confidence 6666666666666666654
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=5.7e-13 Score=132.35 Aligned_cols=276 Identities=13% Similarity=0.085 Sum_probs=222.2
Q ss_pred CHHHHHHHHccCCC--CCh-hHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCChhHHHHHHHHHHhCCChHHHHHHH
Q 046803 156 NVDVARKVFDRMPD--KSV-VAWNSMISGYEQNGFAKEAIGLFNLMRDFG--VNPDSTTCVCVLAACAQLGDIDLGRWVH 230 (580)
Q Consensus 156 ~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 230 (580)
+..+|...|..+++ .|. .....+..+|...+++++|.++|+...+.. ..-+..+|.+++..+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46789999988765 233 344567889999999999999999998742 11256788888876533 2223333
Q ss_pred H-HHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 046803 231 E-FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL---NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306 (580)
Q Consensus 231 ~-~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 306 (580)
. .+++.. +..+.+|-++.++|+-+++.+.|++.|++..+. ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 3 233333 667899999999999999999999999998864 457888888889999999999999999875 344
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHH
Q 046803 307 NN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAM 383 (580)
Q Consensus 307 d~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l 383 (580)
.. ..|-.+...|.+.++++.|+-.|+++. .+.| +.....++...+-+.|+.++|+++++++.-.+| |+..----
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 43 466677889999999999999999887 5667 466777788999999999999999999998777 55554555
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 384 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+..+...+++++|.+.++++.++-|++...+..++.+|-+.|+.+.|..-|.-+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6677788999999999999999999999999999999999999999998888776543
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=4.8e-12 Score=127.71 Aligned_cols=221 Identities=8% Similarity=-0.064 Sum_probs=147.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcH-------HHhhHHhhHh
Q 046803 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV-------VLATSLINMY 252 (580)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y 252 (580)
..+...|++++|.+.++++.+.. +-+......+...+.+.|+++++..++..+.+.+..++. .+|..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554432 112334444445555555555555555555544322111 1223333333
Q ss_pred hhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046803 253 ARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 329 (580)
.+..+.+...++++.+++ .++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHH
Confidence 444556666777777653 46778888888999999999999999888873 444422 12334445588999999
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
..+...+. .+-|...+.++...+.+.|++++|.+.|+..+...|+...+..|...+...|+.++|.+++++.+.+-
T Consensus 316 ~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99888764 23356678889999999999999999998888889998888899999999999999999999987653
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.5e-11 Score=117.64 Aligned_cols=356 Identities=13% Similarity=0.074 Sum_probs=240.7
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc-hHHHHHHHHHH
Q 046803 74 FNTLIIRNSKANFSTDSLLFYRRMIVSNISPS-NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD-LHVQAALVNFY 151 (580)
Q Consensus 74 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y 151 (580)
+-...+-|.++|++++|++.|.+.+. ..|| ..-|.....+|...|+++.+.+.-...++.. |+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 34445667888999999999999887 4677 5556777777788899888877766666543 33 23444444555
Q ss_pred HhCCCHHHHHH----------------------HHcc---------CC---C---CChhHHHHHHHHHH-----------
Q 046803 152 AKSNNVDVARK----------------------VFDR---------MP---D---KSVVAWNSMISGYE----------- 183 (580)
Q Consensus 152 ~~~g~~~~A~~----------------------~f~~---------~~---~---~~~~~~~~li~~~~----------- 183 (580)
-..|++++|+. ++.. +. . |+....++....+.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 56666665532 1110 11 0 11111111111110
Q ss_pred --------------hCC---ChhHHHHHHHHHHHC-CCCC-----Chh------HHHHHHHHHHhCCChHHHHHHHHHHH
Q 046803 184 --------------QNG---FAKEAIGLFNLMRDF-GVNP-----DST------TCVCVLAACAQLGDIDLGRWVHEFIV 234 (580)
Q Consensus 184 --------------~~g---~~~~A~~~~~~m~~~-g~~p-----~~~------t~~~ll~a~~~~~~~~~a~~~~~~~~ 234 (580)
..+ .+.+|...+.+-... -..+ |.. +.......+.-.|+.-.+.+-++..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 001 122222222111100 0011 111 11111111223467788888888888
Q ss_pred HcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHH
Q 046803 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVT 310 (580)
Q Consensus 235 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t 310 (580)
+.. +.+...|--+..+|....+.++..+.|+...+ .|..+|..-.+.+.-.+++++|..-|++.+. +.|+ ...
T Consensus 354 ~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~ 430 (606)
T KOG0547|consen 354 KLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYA 430 (606)
T ss_pred hcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHH
Confidence 875 33444477777889999999999999998764 4566777777777888899999999999988 4554 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---------HHHHH
Q 046803 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA---------PAVWT 381 (580)
Q Consensus 311 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---------~~~~~ 381 (580)
|.-+.-+..+.+.++++...|++.+++ ++..++.|+-....+..++++++|.+.|+.++...|+ +.+.-
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 777777778899999999999999874 4455788998999999999999999999999977765 11222
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+++. ..-.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|.++|++...
T Consensus 509 a~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 509 ALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222 23448999999999999999999999999999999999999999999998643
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=2.5e-11 Score=123.23 Aligned_cols=280 Identities=7% Similarity=-0.052 Sum_probs=124.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHH-HHHHHHHHHhCCCHHHHHHHHccCCC--CC--hhHHHHHHHHHHhCCChhHHHH
Q 046803 119 LSILNLGRAVHCHVFVSGYDSDLHV-QAALVNFYAKSNNVDVARKVFDRMPD--KS--VVAWNSMISGYEQNGFAKEAIG 193 (580)
Q Consensus 119 ~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~ 193 (580)
.|+++.|++......+.. |++.. +-....++...|+.+.|.+.|.+..+ |+ ....-.....+.+.|++++|.+
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 455555555555444432 22221 22223444555555555555554322 11 1122223445555556666666
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhh-------HHhhHhhhcCCHHHHHHHHH
Q 046803 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT-------SLINMYARCGNVSKAREIFD 266 (580)
Q Consensus 194 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~y~~~g~~~~A~~~~~ 266 (580)
.++.+.+.. +-+...+..+..++...|+++.+.+++..+.+.+..+...... .++..-......+...+.+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 665555542 2233345555555555566666666655555554322211111 11111011112233333344
Q ss_pred hccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 046803 267 MMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF---VAVLSACAHAGLVQEGHRVFASMRQEYGL 340 (580)
Q Consensus 267 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 340 (580)
..++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++...+...-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 3332 25555666666666666666666666666653 2333210 11111112234444455555444432211
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH--hHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVK--DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 341 ~p~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
.|+.....++...+.+.|++++|.+.|+ ......|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1211333444555555555555555553 23344455444445555555555555555555544
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=5.1e-10 Score=110.91 Aligned_cols=386 Identities=10% Similarity=0.037 Sum_probs=288.4
Q ss_pred ChhhhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046803 39 SRSMLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115 (580)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 115 (580)
++.+|-+-+ ..-+.++|+.++.+..+ .+...|. +|++..-++.|..+++..++. ++-+...|.+....
T Consensus 379 sv~LWKaAV----elE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~L 449 (913)
T KOG0495|consen 379 SVRLWKAAV----ELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKL 449 (913)
T ss_pred hHHHHHHHH----hccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHH
Confidence 344444444 55555566666655433 2333343 334445566677777776653 55566666555555
Q ss_pred HHccCChHHHHHHHHHHH----HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC-----C-ChhHHHHHHHHHHhC
Q 046803 116 CAHLSILNLGRAVHCHVF----VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-----K-SVVAWNSMISGYEQN 185 (580)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~-~~~~~~~li~~~~~~ 185 (580)
=-..|+.+...++..+.+ ..|+..+..-|-.=...+-+.|..-.+..+...... . -..+|+.-...|.+.
T Consensus 450 EE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~ 529 (913)
T KOG0495|consen 450 EEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKR 529 (913)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhc
Confidence 556667666666655443 345555666665555556666666666666554432 1 235788888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHH
Q 046803 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265 (580)
Q Consensus 186 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 265 (580)
+.++-|..+|...++- ++-+...|......--..|..+.-..++..++..- +.....|-....-+-..|++..|+.++
T Consensus 530 ~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 530 PAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred chHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 8888899999888774 34455677777766667788888888888888774 556667777777888899999999999
Q ss_pred HhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC
Q 046803 266 DMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342 (580)
Q Consensus 266 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 342 (580)
...-+ .+...|-+-+.....+.+++.|..+|.+... ..|+...|.--+..-...++.++|.+++++..+.+ |
T Consensus 608 ~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f---p 682 (913)
T KOG0495|consen 608 DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF---P 682 (913)
T ss_pred HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC---C
Confidence 88765 3456888888889999999999999999887 56777777777776777899999999999998743 4
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 343 G-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 343 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
+ ...|..+...+-+.++++.|.+.|...+..-|+ +..|..|...--+.|++-.|..++++..-.+|.+...|...+.+
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ 762 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRM 762 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 4 667888999999999999999999888888886 77899999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 046803 421 YALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 421 y~~~g~~~~a~~~~~~m~~~ 440 (580)
-.+.|+.+.|..+..+..+.
T Consensus 763 ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 763 ELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999998887664
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=8.1e-11 Score=112.08 Aligned_cols=254 Identities=11% Similarity=0.121 Sum_probs=191.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCcHHHhhHHhhHhhhcCC
Q 046803 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL--DVNVVLATSLINMYARCGN 257 (580)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~ 257 (580)
.++....+.++++.-.+.....|++-+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34455556677777777777666655554444444555566788888888888877631 1145566655533322222
Q ss_pred HHH-HHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 258 VSK-AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 258 ~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
+.- |..++ .+.+--+.|...+.+-|...++.++|...|++..+. .|.. ..++.+..-|....+...|.+-++.++
T Consensus 315 Ls~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 LSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 221 22222 222333445566677788889999999999999884 4554 566667778999999999999999987
Q ss_pred HhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 336 QEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 336 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
.+.| |-..|-.|.++|.-.+...=|+-.|+++...+| |...|.+|...|.+.++.++|++.|.++...+-.+...
T Consensus 392 ---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 392 ---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred ---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 4445 788999999999999999999999999999999 69999999999999999999999999999988778899
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 414 YVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 414 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+..|+.+|.+.++.++|.+.+++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999998765
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=1.9e-11 Score=124.01 Aligned_cols=282 Identities=11% Similarity=0.070 Sum_probs=209.4
Q ss_pred HHhCCCHHHHHHHHccCCCC--C-hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh--HHHHHHHHHHhCCChHH
Q 046803 151 YAKSNNVDVARKVFDRMPDK--S-VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST--TCVCVLAACAQLGDIDL 225 (580)
Q Consensus 151 y~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~ 225 (580)
-...|+++.|.+.+.+..+. + ...+-.....+.+.|++++|.+.|.+..+. .|+.. .-......+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 34679999999999877652 2 344555567788899999999999998764 35543 33335777888999999
Q ss_pred HHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCC---ChHHHHH----HHHHHHhcCChHHHHHHHHH
Q 046803 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL---NVIAWTA----MISGYGMHGYGTEAVELFHR 298 (580)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~g~~~~A~~~~~~ 298 (580)
|.+.++.+.+.. |.+..+...+..+|.+.|++++|.+.+....+. +...+.. ...++...+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999986 667888999999999999999999999988752 3332321 11122333333334445555
Q ss_pred HHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHhHcC
Q 046803 299 MRAHGV---RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH---HVCMVDLFGRAGLLNEAYKFVKDVIG 372 (580)
Q Consensus 299 m~~~g~---~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~ 372 (580)
+.+... +.+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+++.+.+++.+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 554321 136778888889999999999999999999864 243221 11122222345788999999988887
Q ss_pred CCCC-H--HHHHHHHHHHHhcCCchHHHHHHH--HHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 373 EKPA-P--AVWTAMLGACKMHKNFDLGVEVAE--HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 373 ~~p~-~--~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
..|+ + ....++...|.+.|++++|.+.|+ ...+..|++ ..+..++.++.+.|+.++|.+++++...
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7885 5 667799999999999999999999 577777864 5577999999999999999999998643
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=1e-13 Score=133.55 Aligned_cols=256 Identities=14% Similarity=0.098 Sum_probs=86.2
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHH-HHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Q 046803 76 TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI-KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154 (580)
Q Consensus 76 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 154 (580)
.+...+.+.|++++|++++++.......|+...|-.++ ..+...++.+.|.+.++++++.+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34566677788888888886544433234444444333 3444567778888888877776533 55566666666 577
Q ss_pred CCHHHHHHHHccCCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 046803 155 NNVDVARKVFDRMPD--KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHE 231 (580)
Q Consensus 155 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 231 (580)
+++++|.++++..-+ ++...+..++..+.+.++++++.++++...... .+++...|......+.+.|+.++|...+.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777765533 355566677777777788888877777766432 23455566667777777777777777777
Q ss_pred HHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 046803 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS---ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308 (580)
Q Consensus 232 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 308 (580)
+.++.. |.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+..|++..... +.|.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 777764 4456677777777777777777666665543 2455566667777777777777777777766531 2245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
.....+..++...|+.++|.++..++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 555566666667777777766665543
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2e-10 Score=109.45 Aligned_cols=247 Identities=13% Similarity=0.127 Sum_probs=121.2
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCC------ChhHHHHHHHHHHhCCCh
Q 046803 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK------SVVAWNSMISGYEQNGFA 188 (580)
Q Consensus 115 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~ 188 (580)
++......+++.+-.......|++.+...-+-...++-...++|.|+.+|+++... |..+|..++ |+++.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 33344455555555555555555555544444444455555666666666655442 334444443 2222221
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhc
Q 046803 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268 (580)
Q Consensus 189 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 268 (580)
+- ..+.+-.-.=-+--+.|...+.+-|+-.+..++|..+|+..++.+ +....+|+.+.+-|....+...|.+.++..
T Consensus 314 kL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 11 111111100001122344445555555555555555555555554 444555555555555555555555555554
Q ss_pred cC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH
Q 046803 269 SE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344 (580)
Q Consensus 269 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 344 (580)
.+ .|-..|-.|.++|...+...-|+-.|++... ++| |...+.+|..+|.+.++.++|.+.|..... .-..+.
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~ 466 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEG 466 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccch
Confidence 43 3444555555555555555555555555554 233 334555555555555555555555555543 212233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhH
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDV 370 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~ 370 (580)
..+..|.++|-+.++.++|...|++-
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555555555555555555555433
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.8e-09 Score=103.26 Aligned_cols=409 Identities=12% Similarity=0.094 Sum_probs=308.0
Q ss_pred chHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCC--C-ChhhHHHHHHHHHcCCCccHHHHHHHHHH
Q 046803 22 KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS--P-DSFLFNTLIIRNSKANFSTDSLLFYRRMI 98 (580)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 98 (580)
..|++|+.+.+.-. ..+..+|-..+..-.+..++..|+.+|++... | --..|.--+-.--..|+...|.++|++-.
T Consensus 90 ~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 90 QRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45788888877654 44666776666555566689999999997543 2 22356666666666799999999998866
Q ss_pred HCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCC------Ch
Q 046803 99 VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK------SV 172 (580)
Q Consensus 99 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~ 172 (580)
. ..|+...|.+.+..=.+...++.|+.+++..+-. .|++..|--....=.++|....|+.+|+...+. +.
T Consensus 169 ~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 169 E--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred c--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 5 6899999999999988999999999999988754 588888888888889999999999999876541 23
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhCCChHHHHHH--------HHHHHHcCCCCcH
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD--STTCVCVLAACAQLGDIDLGRWV--------HEFIVGQGLDVNV 242 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~--------~~~~~~~~~~~~~ 242 (580)
..+++...--.++..++.|.-+|+-.++. ++-+ ...|......=-+.|+....... ++..++.+ +.|-
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nY 322 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCc
Confidence 45555555556677888899999888775 3333 33454444444455655443332 44455544 6677
Q ss_pred HHhhHHhhHhhhcCCHHHHHHHHHhccC--CCh---HHHHHHHHH--------HHhcCChHHHHHHHHHHHhCCCCCCHH
Q 046803 243 VLATSLINMYARCGNVSKAREIFDMMSE--LNV---IAWTAMISG--------YGMHGYGTEAVELFHRMRAHGVRPNNV 309 (580)
Q Consensus 243 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~pd~~ 309 (580)
.+|--.++.-...|+.+...++|++... |.. ..|...|-. =....+.+.+.++|+..++. ++-..+
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkF 401 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKF 401 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccc
Confidence 7888888888888999999999998763 221 233332221 12467889999999999883 444557
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHH
Q 046803 310 TFVAVLSACA----HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAML 384 (580)
Q Consensus 310 t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll 384 (580)
||.-+--.|+ ++.++..|.+++.... |.-|...++...|..=.+.+.++....+|++-+...| +..+|....
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 7776554444 5788999999999887 8899999999999999999999999999999999999 688899999
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 385 GACKMHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
..-...|+.+.|..+|+-+++....+ ...+-..++.-...|.++.|..+++++.++.
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 99999999999999999998765322 1345566666778999999999999998764
No 46
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=3.8e-10 Score=106.44 Aligned_cols=350 Identities=14% Similarity=0.143 Sum_probs=247.5
Q ss_pred CCChhhhchHHHHHhccCChhHHHHHHccCCC----CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHH
Q 046803 37 GRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS----PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAV 112 (580)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 112 (580)
.....++..+|..+|+..+.+.|++++++-.. -+..+||.+|.+-+-... -++..+|....++||..|||.+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 34567899999999999999999999998764 466789999876543322 6889999999999999999999
Q ss_pred HHHHHccCChHH----HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH-HHHHHccCCC------------CChhHH
Q 046803 113 IKSCAHLSILNL----GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV-ARKVFDRMPD------------KSVVAW 175 (580)
Q Consensus 113 l~a~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~-A~~~f~~~~~------------~~~~~~ 175 (580)
++..++.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ |..+...+.. .|...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998876 46788899999999999999999999999888754 3333333221 245567
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHC----CCCCCh---hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHH
Q 046803 176 NSMISGYEQNGFAKEAIGLFNLMRDF----GVNPDS---TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248 (580)
Q Consensus 176 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 248 (580)
..-++.|.+..+.+-|.++-.-.... -+.|+. .-|..+..+.++....+.-...|+.++-.-+-|+..+..-+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 77777777888888887775544321 133432 34666777888888999999999999877777888888888
Q ss_pred hhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHH
Q 046803 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV---TFVAVLSACAHAGLVQ 325 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~ 325 (580)
+.+..-.|.++-..+++..+.. |...-+.+--++++..|.+....|+.. -+.....-|+. ++.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~------------~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~ 505 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKE------------YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIK 505 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHH------------hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHH
Confidence 8888888888888888777643 222222334455666666666666533 34433333321 222
Q ss_pred HHHH-HHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc------CCCCCHHHHHHHHHHHHhcCCchHHHH
Q 046803 326 EGHR-VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI------GEKPAPAVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 326 ~a~~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~ll~~~~~~g~~~~a~~ 398 (580)
++.+ .-.++. ..+-.....++..-.+.|.|+.++|.+++.... +..|......-++....+.++.-.|..
T Consensus 506 e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 506 EAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 2222 122332 223345567788888999999999999994332 233444444566667777888888888
Q ss_pred HHHHHHhcC
Q 046803 399 VAEHLLSVE 407 (580)
Q Consensus 399 ~~~~~~~~~ 407 (580)
+++-+...+
T Consensus 583 ~lQ~a~~~n 591 (625)
T KOG4422|consen 583 VLQLASAFN 591 (625)
T ss_pred HHHHHHHcC
Confidence 888886655
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=2.2e-11 Score=113.95 Aligned_cols=200 Identities=13% Similarity=0.079 Sum_probs=167.0
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 315 (580)
......+..+...|...|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 33456777888889999999999999987764 346678888889999999999999999988753 23456677788
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCch
Q 046803 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFD 394 (580)
Q Consensus 316 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~ 394 (580)
..+...|++++|.+.++..............+..+...+...|++++|.+.+++.+...|+ ...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8899999999999999998753222234566777889999999999999999888877775 678889999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 395 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+|...++++.+..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999998888888888999999999999999999888754
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.4e-10 Score=110.60 Aligned_cols=387 Identities=12% Similarity=0.043 Sum_probs=270.1
Q ss_pred HHHHHhccCChhHHHHHHc--cCCCCChhhHHHHHHHHHcCCCccHHHHHHH----HHHHC-------C--CCCChhh--
Q 046803 46 LLSLVCDAGFITYAQRIFF--CIPSPDSFLFNTLIIRNSKANFSTDSLLFYR----RMIVS-------N--ISPSNYT-- 108 (580)
Q Consensus 46 ll~~~~~~~~~~~A~~~f~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~-------g--~~p~~~t-- 108 (580)
+.++++-.++++.|..+.. .+.++|..........+.+..++++|+.++. .+..- + +.+|..-
T Consensus 55 ~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~ 134 (611)
T KOG1173|consen 55 LAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGED 134 (611)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCccccc
Confidence 3444555556666655554 4556888888888889999999999998887 22110 0 1111111
Q ss_pred --HHHHH-------HHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-----------------hCC-CHHHHH
Q 046803 109 --FSAVI-------KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYA-----------------KSN-NVDVAR 161 (580)
Q Consensus 109 --~~~ll-------~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~-----------------~~g-~~~~A~ 161 (580)
-+.-. ..+....+.++|+..|.+++...+.-. ..+-.|+.... -.+ +.+.-+
T Consensus 135 ~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~-Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~ 213 (611)
T KOG1173|consen 135 LMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF-EAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLE 213 (611)
T ss_pred ccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH-HHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHH
Confidence 01111 123344567777777777665432211 11111111110 001 111112
Q ss_pred HHHccC----C----------------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC
Q 046803 162 KVFDRM----P----------------DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221 (580)
Q Consensus 162 ~~f~~~----~----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 221 (580)
.+|+-. . +.++...-.-..-+...+++.+..++++...+. .++....+..-|.++...|
T Consensus 214 ~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~ 292 (611)
T KOG1173|consen 214 ILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELG 292 (611)
T ss_pred HHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhc
Confidence 222211 0 013334444455677889999999999998875 3556666666677888888
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC---hHHHHHHHHHHHhcCChHHHHHHHHH
Q 046803 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN---VIAWTAMISGYGMHGYGTEAVELFHR 298 (580)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~ 298 (580)
+..+-..+-..+++.- |....+|-++.--|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..|..
T Consensus 293 ~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 293 KSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred ccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 8887777777777764 7778889999999999999999999999877544 46899999999999999999999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHc------
Q 046803 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVI------ 371 (580)
Q Consensus 299 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~------ 371 (580)
.-+. ++-....+.-+.--|.+.++.+.|.++|.... ++.| |+...+-+.-.....+.+.+|..+|+..+
T Consensus 372 Aarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 372 AARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred HHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 7663 11122334445556888999999999999886 6666 57777777777778899999999998776
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 372 -GEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 372 -~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+..+ -..+++.|..+|++.+.+++|+..+++++.+.|.++.++..++-+|...|+++.|.+.|.+..-
T Consensus 448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 1122 2456889999999999999999999999999999999999999999999999999999988754
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=2.3e-10 Score=104.27 Aligned_cols=315 Identities=14% Similarity=0.121 Sum_probs=176.0
Q ss_pred CCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhCCCHHHH
Q 046803 84 ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD---LHVQAALVNFYAKSNNVDVA 160 (580)
Q Consensus 84 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A 160 (580)
+.++++|.++|-+|.+.... +..+-.++-+-+.+.|..+.|..+|+.+.++.--+. ......|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45678888888888764211 233344556667777888888888887776531111 12334455666677777777
Q ss_pred HHHHccCCCCC---hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 046803 161 RKVFDRMPDKS---VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237 (580)
Q Consensus 161 ~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 237 (580)
+.+|..+.+.+ ..+...|+..|.+..+|++|++.-+++.+.+-++..+- +.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IA----------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IA----------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HH-----------------------
Confidence 77777666532 23455566666666777777766666665443322211 00
Q ss_pred CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 046803 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELN---VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314 (580)
Q Consensus 238 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 314 (580)
..|--|...+....+++.|..++.+..+.| +.+--.+...+...|+++.|++.++...+.+..--..+...|
T Consensus 181 -----qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 181 -----QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred -----HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 111122222223334444444444443321 122223445556666777777777766665333333455566
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCch
Q 046803 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394 (580)
Q Consensus 315 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 394 (580)
..+|.+.|+.+++...+.++.+. .++...-..+.+.-....-.+.|...+.+.+..+|+...+..|+..-..-
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d---- 328 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD---- 328 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc----
Confidence 66777777777777777766542 24444444444544455556666666666677777766665555432211
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCC
Q 046803 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464 (580)
Q Consensus 395 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~ 464 (580)
+..|++.+...+++.|....++..|.+.--..+-..|.|...+
T Consensus 329 ---------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~C 371 (389)
T COG2956 329 ---------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHC 371 (389)
T ss_pred ---------------------------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeC
Confidence 1234566777777777776676666665555555556665544
No 50
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.44 E-value=5.6e-10 Score=114.84 Aligned_cols=353 Identities=10% Similarity=0.056 Sum_probs=228.0
Q ss_pred CCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 046803 85 NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164 (580)
Q Consensus 85 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 164 (580)
|+.++|.+++.+.++.... +...|-+|...+-..|+.+++...+-.+--. .+.|...|-.+.+...+.|+++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 7777777777777665332 4556777777777777777766554333222 2445667777777777777777777777
Q ss_pred ccCCCCChh---HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhCCChHHHHHHHHHHHHc-
Q 046803 165 DRMPDKSVV---AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS----TTCVCVLAACAQLGDIDLGRWVHEFIVGQ- 236 (580)
Q Consensus 165 ~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~- 236 (580)
.+..+.+.. ..---+..|-+.|+...|++-|.++.....+.|. .+.-.++..+...++-+.|.+.+......
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 766653332 2223345667777777777777777664211111 12223344555555556676666666552
Q ss_pred CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC----CCh----------------------HHHH----HHHHHHHhc
Q 046803 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSE----LNV----------------------IAWT----AMISGYGMH 286 (580)
Q Consensus 237 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~----------------------~~~~----~li~~~~~~ 286 (580)
+-..+...++.++.+|.+...++.|......+.. +|. .+|. -+.-++...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 1233455666777777777777777666544432 111 1111 122233344
Q ss_pred CChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 046803 287 GYGTEAVELFHRMRAHGVRP--NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 287 g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 364 (580)
...+....+..-..+..+.| +...|.-+..++.+.|.+.+|..+|..+.... ..-+...|-.+..+|...|..++|.
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE-GYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-cccchhhhHHHHHHHHHHhhHHHHH
Confidence 44444444444445544333 34578888999999999999999999987542 2234778888999999999999999
Q ss_pred HHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC---------CcchHHHHHHHHHhcCChhHHHHHH
Q 046803 365 KFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE---------NPGHYVMLSNIYALAGRMDRVEVVR 434 (580)
Q Consensus 365 ~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~y~~~g~~~~a~~~~ 434 (580)
+.|+..+...|+ ..+--.|...+.+.|+.++|.+.++++..-++. +.........+|...|+.++-..+-
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999888888885 666778888899999999999999987633322 2345567788899999999877776
Q ss_pred HHHHhC
Q 046803 435 NIMIQK 440 (580)
Q Consensus 435 ~~m~~~ 440 (580)
..|...
T Consensus 550 ~~Lv~~ 555 (895)
T KOG2076|consen 550 STLVDD 555 (895)
T ss_pred HHHHHH
Confidence 666553
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=4e-10 Score=102.74 Aligned_cols=211 Identities=12% Similarity=0.082 Sum_probs=138.1
Q ss_pred ccCChhHHHHHHccCCCCChhhHH---HHHHHHHcCCCccHHHHHHHHHHHCCCCCChh------hHHHHHHHHHccCCh
Q 046803 52 DAGFITYAQRIFFCIPSPDSFLFN---TLIIRNSKANFSTDSLLFYRRMIVSNISPSNY------TFSAVIKSCAHLSIL 122 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~~~~~~~ 122 (580)
-..+.+.|..+|-+|.+-|..++. +|.+.|-+.|..+.|+++-..+.++ ||.. ..-.+..-|-..|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 466899999999999886666554 5778899999999999999998764 3321 223344556778999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChh--------HHHHHHHHHHhCCChhHHHHH
Q 046803 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV--------AWNSMISGYEQNGFAKEAIGL 194 (580)
Q Consensus 123 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~ 194 (580)
+.|+.+|..+...| ..-.....-|+..|-...+|++|+++-+++..-+.. .|--|...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998755 334556778999999999999999998876553333 344444555556666677777
Q ss_pred HHHHHHCCCCCChh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhc
Q 046803 195 FNLMRDFGVNPDST-TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268 (580)
Q Consensus 195 ~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 268 (580)
+.+..+. .|+.+ .-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++
T Consensus 203 l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 203 LKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7666654 23222 222334445555566666666665555543333444444444444444444444444433
No 52
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=1.2e-10 Score=110.40 Aligned_cols=184 Identities=13% Similarity=0.112 Sum_probs=132.8
Q ss_pred hcCCHHHHHHHHHhccCCChHHHHHHH---HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046803 254 RCGNVSKAREIFDMMSELNVIAWTAMI---SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 254 ~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
..|++++|.+.|++....|...-.+|. -.+-..|+.++|++.|-++..- +..+......+.+.|-...+..+|.++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 456777777777777666655443333 2455677788888877776542 233555666777777778888888888
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
+-.... -++.|+...+.|.+.|-+.|+-..|.+.+-+....-| +..+..-|..-|....-+++++..|+++.-+.|+
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 766642 3444688888888888888888888887766666556 5666666666777777789999999999888887
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 410 NPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 410 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
-..-...++.++.+.|++..|..+++....+
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5555556677788999999999999988654
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=1.7e-10 Score=116.17 Aligned_cols=232 Identities=15% Similarity=0.172 Sum_probs=177.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHc-----C-CCCcH-HHhhHHhhHhhhcCCHHHHHHHHHhccC-------C--
Q 046803 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQ-----G-LDVNV-VLATSLINMYARCGNVSKAREIFDMMSE-------L-- 271 (580)
Q Consensus 208 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~-- 271 (580)
.+...+...|...|+++.|..++++.++. | ..|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46777888999999999999998888765 2 12232 2344577889999999999999988763 1
Q ss_pred --ChHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--C
Q 046803 272 --NVIAWTAMISGYGMHGYGTEAVELFHRMRA-----HGV-RPNNV-TFVAVLSACAHAGLVQEGHRVFASMRQEYG--L 340 (580)
Q Consensus 272 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 340 (580)
-..+++.|..+|...|++++|...+++..+ .|. .|+.. -++.+...|...+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 235778888899999999998888877653 122 23332 456677789999999999999988776543 2
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHhHcC--------CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh--
Q 046803 341 LPG----VEHHVCMVDLFGRAGLLNEAYKFVKDVIG--------EKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLS-- 405 (580)
Q Consensus 341 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 405 (580)
.++ ..+++.|...|...|++++|.+++++++. ..+. ...++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 56789999999999999999999988771 1232 45678899999999999999999998654
Q ss_pred --cCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 406 --VEPEN---PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 406 --~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+|+. ..+|..|+.+|.+.|+++.|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44554 45788999999999999999999988753
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=1.5e-09 Score=102.09 Aligned_cols=287 Identities=11% Similarity=0.043 Sum_probs=187.0
Q ss_pred CCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 046803 84 ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163 (580)
Q Consensus 84 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 163 (580)
.|++..|..+..+-.+.+-.|- ..|.....+.-..|+.+.+-+++.++-+..-.++..+.-+........|+++.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4777777777777665554332 234445555666777777777777776664455666666666777777777777666
Q ss_pred HccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 046803 164 FDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240 (580)
Q Consensus 164 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 240 (580)
.+++.+ .+.........+|.+.|++.+...++..|.+.|+--|+..-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 655432 4566666777777777777777777777776665433321000
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 317 (580)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 012233333333333333333344555442 3455556677777788888888888888877766666 222334
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHH
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
+.+-++...-.+..+...+.++..| ..+..|...|.+.+.+.+|.+.|+.+++..|+..+|+.+..++.+.|+.++|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 5667777777777777666555555 56777888888888888888888777888888888888888888888888888
Q ss_pred HHHHHHHh
Q 046803 398 EVAEHLLS 405 (580)
Q Consensus 398 ~~~~~~~~ 405 (580)
+..++.+.
T Consensus 382 ~~r~e~L~ 389 (400)
T COG3071 382 QVRREALL 389 (400)
T ss_pred HHHHHHHH
Confidence 88888764
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=1.6e-09 Score=101.99 Aligned_cols=279 Identities=14% Similarity=0.122 Sum_probs=210.8
Q ss_pred CCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 046803 154 SNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH 230 (580)
Q Consensus 154 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 230 (580)
.|++..|++...+-.+ .....|..-+.+--+.|+.+.+-.++.+.-+..-.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5888888888876543 2344555556667778888888888888876422344445566666777888888888888
Q ss_pred HHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC-----------hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046803 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN-----------VIAWTAMISGYGMHGYGTEAVELFHRM 299 (580)
Q Consensus 231 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 299 (580)
.++.+.+ +-++.+......+|.+.|++.....+...+.+.. ..+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888876 6677888888889999999999988888887632 236777776666555555655667666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHH
Q 046803 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APA 378 (580)
Q Consensus 300 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 378 (580)
... .+-+...-.+++.-+...|+.++|.++.....++ +..|+.. ..-...+-++...-++..++.+...| ++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 543 4555666677888889999999999999888765 6666621 11223466777777777767776666 478
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 379 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.+.+|...|.+++.+.+|...++.+++..|+ ...|..++.+|.+.|+..+|.+.+++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8999999999999999999999999999987 688999999999999999999999987643
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=4e-10 Score=118.83 Aligned_cols=261 Identities=11% Similarity=0.003 Sum_probs=192.2
Q ss_pred ChhHHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHH---------hCCChHHHHHHHHHHHH
Q 046803 171 SVVAWNSMISGYEQ-----NGFAKEAIGLFNLMRDFGVNPDS-TTCVCVLAACA---------QLGDIDLGRWVHEFIVG 235 (580)
Q Consensus 171 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~---------~~~~~~~a~~~~~~~~~ 235 (580)
+...|...+.+-.. .+..++|+++|++..+. .|+. ..+..+..++. ..+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45566666665322 13467999999999874 5654 35555544443 22447899999999998
Q ss_pred cCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HH
Q 046803 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV-TF 311 (580)
Q Consensus 236 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~ 311 (580)
.+ +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 86 66788889999999999999999999998775 3 4568888999999999999999999999984 45432 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHh
Q 046803 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKM 389 (580)
Q Consensus 312 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~ 389 (580)
..++..+...|++++|...++++.+. ..| +...+..+..+|...|++++|.+.+++..+..|+ ...++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34444566789999999999988753 234 4556777888999999999999999777777776 4446666667777
Q ss_pred cCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 390 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
.| +.|...++++++..-..+.....+..+|.-.|+-+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4888888887764422222233377788888888877776 7776653
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.8e-09 Score=102.47 Aligned_cols=220 Identities=12% Similarity=0.013 Sum_probs=177.1
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHH
Q 046803 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260 (580)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 260 (580)
.+.-.|+...|...|+..+.....++ ..|.-+..+|....+.++..+.|....+.+ +.++.+|.-=..++.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 34557899999999999988643322 237778888999999999999999999987 6678888888888888899999
Q ss_pred HHHHHHhccCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 261 AREIFDMMSEL---NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 261 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
|..=|++.... ++..|-.+..+..+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+..+.
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999988763 4567777777778889999999999999875 444567888889999999999999999999873
Q ss_pred cCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 338 YGLLPG---------VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 338 ~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
+.|+ +.+--+++-.- -.+++..|.+++++++...|. ...+..|...-.+.|+.++|+++|++...+-
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333 11112222222 348999999999999999995 6779999999999999999999999987653
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.6e-09 Score=106.00 Aligned_cols=279 Identities=11% Similarity=0.036 Sum_probs=219.5
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 046803 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK---SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213 (580)
Q Consensus 137 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 213 (580)
...+..+.....+-+...+++.+..++++.+.+. +...+..-|..+...|+..+-..+=.++.+. .+-.+.+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3456666677777888899999999999988764 3456666778899999988888877888775 35567799999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C-ChHHHHHHHHHHHhcCChH
Q 046803 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L-NVIAWTAMISGYGMHGYGT 290 (580)
Q Consensus 214 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 290 (580)
.--|...|..++|+..+.+....+ +.-...|-.+...|+-.|.-++|...+....+ + .--.+--+.--|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 999999999999999999988765 44567888999999999999999988876543 1 1111222344577889999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-CC---CC-CHHHHHHHHHHHHHcCCHHHHH
Q 046803 291 EAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEY-GL---LP-GVEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 291 ~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~---~p-~~~~~~~li~~~~~~g~~~~A~ 364 (580)
.|.+.|.+... +.|+ ....+-+.-...+.+.+.+|..+|+.....- .+ .+ ...+++.|..+|.+.+++++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999998876 4554 4566666656667889999999999876311 11 11 3456888999999999999999
Q ss_pred HHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHH
Q 046803 365 KFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419 (580)
Q Consensus 365 ~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 419 (580)
..+++.+...| +..++.++.-.|...|+++.|+..|.+++.+.|+|..+-..|..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 99999998888 68999999999999999999999999999999998655554443
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=5e-11 Score=121.75 Aligned_cols=269 Identities=16% Similarity=0.177 Sum_probs=192.8
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC
Q 046803 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272 (580)
Q Consensus 193 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 272 (580)
.++..+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999998 9999998888999999999999999999887766 788
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
..+|+.|..+|.++|+... ++..++ -...+...++..|.-..-..++..+.-..+..||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999765 333332 122344455666665555566555433334445543 3555
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc-CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH-KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 431 (580)
.+.-.|.++.+++++ ..+|...-.......+.-+... ..+++-....+...+ . .++.+|..+...-..+|+.+.|.
T Consensus 148 llv~eglwaqllkll-~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~-~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLL-AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-A-PTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHH-hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-C-CChHHHHHHHHHHHhcCchhhHH
Confidence 666778888888888 5554322111111124433332 233444444444444 3 45889999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccCCccccccccch
Q 046803 432 VVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502 (580)
Q Consensus 432 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~ 502 (580)
.++..|+++|++-.+.+.|..+-| . +....++.+.+-|++.|+.|+..+...-+.+
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g--------~-------~~~q~~e~vlrgmqe~gv~p~seT~adyvip 280 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG--------I-------NAAQVFEFVLRGMQEKGVQPGSETQADYVIP 280 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc--------C-------ccchHHHHHHHHHHHhcCCCCcchhHHHHHh
Confidence 999999999999999999965432 1 2223445577889999999999876544433
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=3.3e-12 Score=86.71 Aligned_cols=50 Identities=30% Similarity=0.514 Sum_probs=47.9
Q ss_pred CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 046803 69 PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118 (580)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 118 (580)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=1.3e-08 Score=103.22 Aligned_cols=399 Identities=11% Similarity=0.051 Sum_probs=261.6
Q ss_pred CCCChhhhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhh-HHH
Q 046803 36 YGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYT-FSA 111 (580)
Q Consensus 36 ~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ 111 (580)
+.-|+.+|..|.-++...|+++.+.+.|++... .....|+.+-..|.-.|.-..|+.+.+.-......|+..+ +-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 456788899888888899999999999987543 3456799999999999999999999988655433354333 333
Q ss_pred HHHHHH-ccCChHHHHHHHHHHHHh--CC--CCchHHHHHHHHHHHhC-----------CCHHHHHHHHccCCCC---Ch
Q 046803 112 VIKSCA-HLSILNLGRAVHCHVFVS--GY--DSDLHVQAALVNFYAKS-----------NNVDVARKVFDRMPDK---SV 172 (580)
Q Consensus 112 ll~a~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~~~~~---~~ 172 (580)
.-..|. +.+..+++..+-.+++.. +. ...+..+-.+.-+|... ....++.+.+++..+. |.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 334443 457777777777777662 21 11233444444444322 1234556666655432 22
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 252 (580)
.+---+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|+.+.+.....- +.|......-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhh
Confidence 22222333466778889999999888887656677888888888888889999988887776531 11211111112222
Q ss_pred hhcCCHHHHHHHHHhccC-------------------------------CCh-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046803 253 ARCGNVSKAREIFDMMSE-------------------------------LNV-IAWTAMISGYGMHGYGTEAVELFHRMR 300 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~-------------------------------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 300 (580)
..-++.++|......+.. .+. .++..+. +.++ -+...+..-.. |.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~~~~se~~-Lp 634 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLKSAGSELK-LP 634 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhhhcccccc-cC
Confidence 224444444443322210 011 1111111 1111 00000000000 11
Q ss_pred hCCCC--CCH------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 301 AHGVR--PNN------VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 301 ~~g~~--pd~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
..-+. |+. ..+......+...+..++|...+.+..+ +.| ....|......+...|..++|.+.|..++
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 11112 221 2344455577788899999988888763 344 57777777888999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCchHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 372 GEKPA-PAVWTAMLGACKMHKNFDLGVE--VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 372 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
...|+ +.+..++...+...|+...|.. ++..+++++|.++.+|..|+.++-+.|+.++|.+.|....+..
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99996 7889999999999999998888 9999999999999999999999999999999999999887653
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=1.7e-09 Score=101.02 Aligned_cols=200 Identities=11% Similarity=0.066 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhH
Q 046803 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251 (580)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 251 (580)
...+..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+....+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456666777777777777777777766542 2234455555566666666666666666665543 3333444444445
Q ss_pred hhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046803 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 252 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
|...|++++|.+.|+ +.......| +...+..+..++...|++++|...
T Consensus 109 ~~~~g~~~~A~~~~~-------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 LCQQGKYEQAMQQFE-------------------------------QAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHcccHHHHHHHHH-------------------------------HHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555544 444321111 122334444455555666666666
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 046803 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406 (580)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 406 (580)
+++..+. .+.+...+..+...+...|++++|.+.+++.....| +...+..+...+...|+.++|....+.+.+.
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6555432 112344455555666666666666666655544333 3444555555566666666666665555443
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=3e-10 Score=103.52 Aligned_cols=228 Identities=14% Similarity=0.137 Sum_probs=160.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhc
Q 046803 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255 (580)
Q Consensus 176 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 255 (580)
+.|..+|.+.|.+.+|.+.|+.-.+. .|-+.||..+-++|.+...++.|..++.+-++. +|.|+.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788888999999998888887764 567778888888888888888888888887776 355555556666666666
Q ss_pred CCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046803 256 GNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332 (580)
Q Consensus 256 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 332 (580)
++.++|.++++...+ .|+.+..++..+|.-.++++-|+..|+++.+.|+. +...|..+.-+|...++++-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777666553 34445555555666666666666666666666654 44555555555555555555555444
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 333 SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 333 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
+.... ...|+ ..+|..|.......||+..|.+.|+-.+..+|++
T Consensus 383 RAlst----------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 383 RALST----------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHhh----------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 44321 11222 4567777777777788888888888888888888
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 411 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
..+++.|+..-.+.|+.++|..++.......
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8888888888888888888888888876653
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=7.9e-09 Score=97.31 Aligned_cols=302 Identities=9% Similarity=-0.028 Sum_probs=210.8
Q ss_pred CChhhHHHHHHHHHc--cCChHHHHHHHHHHHH-hCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHH---HH
Q 046803 104 PSNYTFSAVIKSCAH--LSILNLGRAVHCHVFV-SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW---NS 177 (580)
Q Consensus 104 p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~---~~ 177 (580)
|+..+...-+.+++. .++...+.+.+..+.. .-++.|+....++..+|...|+.++|...|++...-|..+. ..
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 333344444444433 3444444444444433 33567788889999999999999999999988765443322 22
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCC
Q 046803 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257 (580)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 257 (580)
..-.+.+.|+.+....+...+.... +-....|..-+...-..++++.|..+-++.++.+ +.++..+-.-...+...|+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence 2334567788888777777765431 1233334444444456678888888888888765 4455555555667778899
Q ss_pred HHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHH
Q 046803 258 VSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL-SACA-HAGLVQEGHRVFA 332 (580)
Q Consensus 258 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~a~~-~~g~~~~a~~~~~ 332 (580)
.++|.=.|+.... -+..+|.-|+..|...|...+|.-+-+...+. +.-+..+.+.+. ..|. ....-++|.++++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9999999987653 46789999999999999999998877765542 233445554442 2332 2233577888887
Q ss_pred HhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 333 SMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 333 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
+.. .+.|+ ....+.+...+.+.|+.++++.++++.+...||....+.|...+...+.+++|...|..+++++|++-
T Consensus 429 k~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 429 KSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 765 56676 55667788888999999999999988888889999999999999999999999999999999999863
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.5e-11 Score=83.48 Aligned_cols=50 Identities=28% Similarity=0.607 Sum_probs=46.5
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046803 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320 (580)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 320 (580)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999864
No 66
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.23 E-value=2.7e-09 Score=109.42 Aligned_cols=335 Identities=12% Similarity=0.077 Sum_probs=150.8
Q ss_pred CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 046803 69 PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148 (580)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 148 (580)
||-+||..+|.-|+..|+.+.|- +|.-|.......+...|+.++.+....++.+.+. .|-..+|+.|.
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll 90 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLL 90 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHH
Confidence 55566666666666666666555 6666655555555555666666555555555443 45555666666
Q ss_pred HHHHhCCCHHH---HHHHHccCCC-------CChh---------------HHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 046803 149 NFYAKSNNVDV---ARKVFDRMPD-------KSVV---------------AWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203 (580)
Q Consensus 149 ~~y~~~g~~~~---A~~~f~~~~~-------~~~~---------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 203 (580)
..|...||+.. .++.+..+.. .... .-...+....-.|.++.+++++..+....-
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 66666666543 1111111100 0000 001122222333444444444433322110
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC----hHHHHHH
Q 046803 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN----VIAWTAM 279 (580)
Q Consensus 204 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~l 279 (580)
. . ++..+++-+... ..-.+++.......--.++..++.++++.-...|+++.|..++.+|.+.. ..-|-.|
T Consensus 171 ~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 171 N-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred c-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 0 0 111123322221 12223333332222114566666666666666666666666666666522 2222233
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHH
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFG 355 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~ 355 (580)
+-+ .++..-+..+++-|.+.|+.|+..|+...+..+...|....+.. |.+.+ ...+..+..+..
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e---------~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE---------GSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc---------ccchhhhhhHHHHHHHhcccH
Confidence 333 55555666666666666666666666665555555433222211 11111 111222222111
Q ss_pred HcCCHHH-----HHHHHHhHc--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH----hcCCCCcchHHHHHHHHHhc
Q 046803 356 RAGLLNE-----AYKFVKDVI--GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL----SVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 356 ~~g~~~~-----A~~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~p~~~~~~~~l~~~y~~~ 424 (580)
...+++. ....+++.+ ++.-...+|.... -...+|.-++.+++...+. +..|.+...|..+..-|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 1111111 111111110 2222224443322 2334688888888877765 34466677777777777655
Q ss_pred CChhHHHHH
Q 046803 425 GRMDRVEVV 433 (580)
Q Consensus 425 g~~~~a~~~ 433 (580)
-+..-...+
T Consensus 393 ~e~~~~~~i 401 (1088)
T KOG4318|consen 393 IERHICSRI 401 (1088)
T ss_pred HHhhHHHHH
Confidence 433333333
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=2e-09 Score=113.63 Aligned_cols=227 Identities=11% Similarity=0.029 Sum_probs=173.8
Q ss_pred ChhHHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhh---------hcCCHHHHHHHHHhccC-
Q 046803 206 DSTTCVCVLAACAQ-----LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA---------RCGNVSKAREIFDMMSE- 270 (580)
Q Consensus 206 ~~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~- 270 (580)
+...|...+.+-.. .+++++|.+.+++.++.. |.+...+..+..+|. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 34455555555322 234678999999999875 445666666665554 23458999999998875
Q ss_pred --CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHH
Q 046803 271 --LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEH 346 (580)
Q Consensus 271 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 346 (580)
.+..+|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++++.+ +.|+ ...
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~ 408 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAA 408 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhh
Confidence 35678888888999999999999999999984 455 45677788899999999999999999874 3454 223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCC-CC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEK-PA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 424 (580)
+..++..+...|++++|.+.+++.+... |+ +..+..+..++...|+.++|...++++....|.+......+...|...
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 3334555777899999999998777543 54 566778888899999999999999999888888888888888888888
Q ss_pred CChhHHHHHHHHHHhC
Q 046803 425 GRMDRVEVVRNIMIQK 440 (580)
Q Consensus 425 g~~~~a~~~~~~m~~~ 440 (580)
| +.|...++.+.+.
T Consensus 489 g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 489 S--ERALPTIREFLES 502 (553)
T ss_pred H--HHHHHHHHHHHHH
Confidence 8 4888878777653
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=1e-08 Score=99.15 Aligned_cols=227 Identities=12% Similarity=-0.017 Sum_probs=148.0
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHH
Q 046803 186 GFAKEAIGLFNLMRDFG-VNPD--STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262 (580)
Q Consensus 186 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 262 (580)
+..+.++.-+.+++... ..|+ ...|......+...|+.++|...|.+.++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 2222 2346666667778888888888888887765 556778888888888888888888
Q ss_pred HHHHhccC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 046803 263 EIFDMMSE--L-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339 (580)
Q Consensus 263 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 339 (580)
+.|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88887764 3 4567888888888889999999999888873 45443222222234456788899988876543 3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHH--HHHHHHHhHcCCC----C-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-c
Q 046803 340 LLPGVEHHVCMVDLFGRAGLLN--EAYKFVKDVIGEK----P-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN-P 411 (580)
Q Consensus 340 ~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~----p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~ 411 (580)
..|+...+ .++..+ .|++. ++.+.+.+..+.. | ....|..+...+.+.|++++|+..|+++++.+|.+ .
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33433222 233333 44443 3333332222222 2 24578899999999999999999999999998753 3
Q ss_pred chHHHHHHH
Q 046803 412 GHYVMLSNI 420 (580)
Q Consensus 412 ~~~~~l~~~ 420 (580)
..-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333334433
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=4.1e-09 Score=106.24 Aligned_cols=232 Identities=14% Similarity=0.151 Sum_probs=171.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHC-----C-CCCChhHH-HHHHHHHHhCCChHHHHHHHHHHHHc-----C--CC
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDF-----G-VNPDSTTC-VCVLAACAQLGDIDLGRWVHEFIVGQ-----G--LD 239 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~-----~--~~ 239 (580)
+...+...|...|++++|..+++...+. | ..|...+. ..+...|...+.+++|..+|+.+... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444777888888888888888777653 2 12343333 33666778888888888888887753 2 12
Q ss_pred CcHHHhhHHhhHhhhcCCHHHHHHHHHhccC----------CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCC
Q 046803 240 VNVVLATSLINMYARCGNVSKAREIFDMMSE----------LNV-IAWTAMISGYGMHGYGTEAVELFHRMRA---HGVR 305 (580)
Q Consensus 240 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~ 305 (580)
.-..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..++++..+ .-+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2345567777789999999998888876542 222 2456677788899999999999987654 2233
Q ss_pred CCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhc----C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHc----
Q 046803 306 PNN----VTFVAVLSACAHAGLVQEGHRVFASMRQEY----G-LLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVI---- 371 (580)
Q Consensus 306 pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~---- 371 (580)
++. .++..|...|.+.|++++|.++|+++.+.. + ..+. -..++.|...|.+.+++.+|.++|.+..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 333 478899999999999999999999987653 1 1222 5567889999999999999999997765
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046803 372 ---GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 372 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
+..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33455 56799999999999999999999998873
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.3e-09 Score=99.39 Aligned_cols=197 Identities=11% Similarity=0.115 Sum_probs=164.9
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHH
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV-AVLSA 317 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~ll~a 317 (580)
|..--+.+..+|.+.|.+.+|++.|+...+ |-+.||-.|-.+|.+..+++.|+.+|.+-.+ ..|-.+||. .....
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHH
Confidence 334446788999999999999999987763 7788999999999999999999999999887 467777765 45567
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHH
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a 396 (580)
+-..++.++|.++|+...+. -+.+++...|+...|.-.++++-|+.+|++.+.... ++..|+.+.-.|.-.+++|.+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 88889999999999999863 334678888888999999999999999988775543 688999999999999999999
Q ss_pred HHHHHHHHhcC--CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 397 VEVAEHLLSVE--PE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 397 ~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+..|++++... |+ -...|..|+.+....|++..|.+-|+.....+
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99999998654 32 35689999999999999999999998876554
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=6.7e-07 Score=84.65 Aligned_cols=282 Identities=11% Similarity=0.029 Sum_probs=206.1
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH-HHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHH
Q 046803 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC-VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248 (580)
Q Consensus 170 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 248 (580)
.|+.....+...+...|+.++|+..|++.+. +.|+..+- -.-.-.+...|+.+....+...+.... ......|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 3777888999999999999999999998875 34544321 111222356788888887777776543 1222223233
Q ss_pred hhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 046803 249 INMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLV 324 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~ 324 (580)
.......++++.|..+-++..+ +++..+-.-...+.+.|+.++|.-.|+..+. +.| +...|..|+..|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 3344556788888888887765 4455555556778899999999999999887 444 568999999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHH
Q 046803 325 QEGHRVFASMRQEYGLLPGVEHHVCMV-DLFG-RAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAE 401 (580)
Q Consensus 325 ~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 401 (580)
.+|.-+-+...+. +..+..+.+.+. ..+. .-..-++|..++++.+.++|+ ....+.+...|...|..+.++.+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9998887776653 333444444332 2222 122347899999999999998 6677888899999999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHH
Q 046803 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481 (580)
Q Consensus 402 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 481 (580)
+.+...|+ ....+.|++.+...+.+.+|...|..... ..|+.+...+-++.|.
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHH
Confidence 99988887 47888999999999999999999887755 3466777777777766
Q ss_pred HHHH
Q 046803 482 GRCR 485 (580)
Q Consensus 482 ~~m~ 485 (580)
++|+
T Consensus 516 K~~~ 519 (564)
T KOG1174|consen 516 KSDD 519 (564)
T ss_pred hccC
Confidence 6655
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=2.5e-09 Score=105.22 Aligned_cols=220 Identities=13% Similarity=0.076 Sum_probs=180.2
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHH
Q 046803 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVE 294 (580)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 294 (580)
.+.|++.+|.-.|+..++.+ |.+...|--|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 57788999999999999886 77888999999999999999999999988875 456777788888999999999999
Q ss_pred HHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 046803 295 LFHRMRAHGVR--------PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366 (580)
Q Consensus 295 ~~~~m~~~g~~--------pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 366 (580)
.+++-+....+ ++..+-.. ....+...+....++|-.+....+..+|..++.+|.-.|.-.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99988664211 00000000 111222334556667777766667668888999999999999999999999
Q ss_pred HHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 367 VKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 367 ~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
|+.++..+| |..+||-|...++...+.++|+..|.+++++.|.-..+...|+..|...|.+++|.+.|-..+..
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999999 58889999999999999999999999999999999999999999999999999999998876653
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=4.3e-07 Score=90.76 Aligned_cols=384 Identities=9% Similarity=0.028 Sum_probs=244.3
Q ss_pred HhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChh-hHHHHHHHHHccCChHHH
Q 046803 50 VCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNY-TFSAVIKSCAHLSILNLG 125 (580)
Q Consensus 50 ~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a 125 (580)
++.+|+-++|......... ++.+.|..+.-.+....++++|+.+|+..... .||.. .+.-+.---++.++++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhH
Confidence 4567788888887765443 57788999988888889999999999998874 45544 344333333466777777
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC-----CChhHHHH------HHHHHHhCCChhHHHHH
Q 046803 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-----KSVVAWNS------MISGYEQNGFAKEAIGL 194 (580)
Q Consensus 126 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~------li~~~~~~g~~~~A~~~ 194 (580)
...-.+.++.. +.....|..+.-++.-.|+...|..+.+...+ ++...+.- ......++|..++|++.
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 66666666543 34556777788888888899988888766542 33332222 22345677888888888
Q ss_pred HHHHHHCCCCCChhHH-HHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHH-HHHHhccCC-
Q 046803 195 FNLMRDFGVNPDSTTC-VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR-EIFDMMSEL- 271 (580)
Q Consensus 195 ~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~- 271 (580)
+..-... ..|...+ ..-...+.+.+++++|..++..++... |.+...|-.+..++.+-.+.-++. .+|....+.
T Consensus 208 L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 208 LLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 7765432 2233322 334556678889999999999988875 444444555556665443434444 555554431
Q ss_pred -ChHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhHHh--c-----
Q 046803 272 -NVIAWTAMISGYGM-HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE----GHRVFASMRQE--Y----- 338 (580)
Q Consensus 272 -~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~--~----- 338 (580)
-...-..+--.... ..-.+..-.++..+.+.|++|-...+.++ |-.-...+- +..+...+... +
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccc
Confidence 00000000001111 12233445566777778877543333333 222111111 11222221100 0
Q ss_pred C--CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 339 G--LLPGV--EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 339 ~--~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
+ -+|.. .++-.++..+-+.|+++.|..+++.+++-.|. +..|..-...+...|++++|...++++.+++-.|...
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 0 13543 34556788899999999999999999998897 5567777888999999999999999999998665544
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 414 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
-..-+.-..++.+.++|.++.....+.|.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 44567777899999999999998877664
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.9e-06 Score=84.14 Aligned_cols=395 Identities=13% Similarity=0.109 Sum_probs=210.0
Q ss_pred chHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHH--HH--HHHcCCCccHHHHHHHHH
Q 046803 22 KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTL--II--RNSKANFSTDSLLFYRRM 97 (580)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~l--i~--~~~~~g~~~~A~~~~~~m 97 (580)
+.+.+.-..++..+-.+.......++ ++.+...+++|+++.+.-..- .+++.. =. +..+.+..++|+..+.
T Consensus 29 e~a~k~~~Kil~~~pdd~~a~~cKvV-alIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~-- 103 (652)
T KOG2376|consen 29 EEAVKTANKILSIVPDDEDAIRCKVV-ALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK-- 103 (652)
T ss_pred HHHHHHHHHHHhcCCCcHhhHhhhHh-hhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh--
Confidence 45555555565555333233344444 666888888888766543321 122222 22 3346778888888877
Q ss_pred HHCCCCCCh-hhHHHHHHHHHccCChHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHH
Q 046803 98 IVSNISPSN-YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS-DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175 (580)
Q Consensus 98 ~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 175 (580)
|..++. .+...-...|-+.+++++|..+|+.+.+.+.+. +...-..++.+-. .-.+. +.+..+.....+|
T Consensus 104 ---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 104 ---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPEVPEDSY 175 (652)
T ss_pred ---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccCCCcchH
Confidence 333332 244445556778888888888888887765321 1111111111111 00111 2222222222222
Q ss_pred HH---HHHHHHhCCChhHHHHHHHHHHHCCC-------------CCChh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 046803 176 NS---MISGYEQNGFAKEAIGLFNLMRDFGV-------------NPDST-TCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238 (580)
Q Consensus 176 ~~---li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 238 (580)
.. ....++..|++.+|+++++...+.+. .-+.. .-.-+.-++-..|+.++|.+++..+++...
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 22 23344556666666666665522110 00000 111122333445666666666666665542
Q ss_pred CCcH----HHhhHHhhHhhh---------------------------------------------cCCHHHHHHHHHhcc
Q 046803 239 DVNV----VLATSLINMYAR---------------------------------------------CGNVSKAREIFDMMS 269 (580)
Q Consensus 239 ~~~~----~~~~~li~~y~~---------------------------------------------~g~~~~A~~~~~~~~ 269 (580)
+|. ...|.|+.+-.. .+..+.+.++-...+
T Consensus 256 -~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 256 -ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred -CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 221 122222221111 122233333333333
Q ss_pred CCC-hHHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--------HhHH
Q 046803 270 ELN-VIAWTAMISGY--GMHGYGTEAVELFHRMRAHGVRPNN--VTFVAVLSACAHAGLVQEGHRVFA--------SMRQ 336 (580)
Q Consensus 270 ~~~-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~--------~~~~ 336 (580)
... ...+..++... .+.....+|.+++...-+. .|+. ......+......|+++.|.+++. .+.+
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 211 12233333322 2223466777777766653 3333 444555667788999999999998 4432
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc-------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 046803 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI-------GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 337 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 408 (580)
.+..|. +...++..+.+.++-+.|.+++.+++ .-.+. ..+|.-+...-.++|+-++|...++++++.+|
T Consensus 413 -~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 413 -AKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred -hccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 233444 44557888888887666666555544 33332 33455555555778999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 409 ENPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 409 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
++..+...++.+|++. +.+.|..+-+.
T Consensus 490 ~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 490 NDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred chHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999999987 56666665443
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=1.7e-08 Score=97.55 Aligned_cols=213 Identities=14% Similarity=0.053 Sum_probs=156.4
Q ss_pred CChHHHHHHHHHHHHcC-CCC--cHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHH
Q 046803 221 GDIDLGRWVHEFIVGQG-LDV--NVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVE 294 (580)
Q Consensus 221 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 294 (580)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 35566677777777542 222 245688888899999999999999998874 457899999999999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC
Q 046803 295 LFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373 (580)
Q Consensus 295 ~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 373 (580)
.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.+.+....
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 4565 467788888899999999999999998753 454322222223345678899999999665533
Q ss_pred -CCCHHHHHHHHHHHHhcCCchHHHHHHHHHH-------hcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 374 -KPAPAVWTAMLGACKMHKNFDLGVEVAEHLL-------SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 374 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
.|+. |. ........|+...+ ..++.+. ++.|..+.+|..|+.+|.+.|++++|...|++..+.++
T Consensus 195 ~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332 32 12333445666554 3444444 44566678999999999999999999999999987553
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=1.4e-08 Score=88.72 Aligned_cols=163 Identities=15% Similarity=0.130 Sum_probs=135.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVD 352 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 352 (580)
+...|.-+|.+.|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+... .+.| +-.+.|...-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 3445677888999999999999998884 4554 577788888999999999999999887 4455 4778888889
Q ss_pred HHHHcCCHHHHHHHHHhHc--CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 046803 353 LFGRAGLLNEAYKFVKDVI--GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 429 (580)
.+|..|++++|...|++++ |.-|. ..+|..+..+..+.|+.+.|...+++.++.+|+++.....+.....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999998887 33332 67788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 046803 430 VEVVRNIMIQKGL 442 (580)
Q Consensus 430 a~~~~~~m~~~~~ 442 (580)
|...++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999988876543
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.08 E-value=7.7e-08 Score=98.35 Aligned_cols=149 Identities=10% Similarity=0.119 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-------------CCCCCH--HHHHHHHHHHH
Q 046803 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY-------------GLLPGV--EHHVCMVDLFG 355 (580)
Q Consensus 291 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~--~~~~~li~~~~ 355 (580)
.+...+..+...|+++ +|+.|-..|......+-..+++....... .-.|.. .++.-+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 4455566666777654 44444444554444444444444443221 112343 34456678888
Q ss_pred HcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 046803 356 RAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 434 (580)
+.|++++|++++++++...|. +..|..-...+...|++++|.+.++.+.++++.|...-...+..+.++|+.++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999889988896 7788888999999999999999999999999998877778888889999999999999
Q ss_pred HHHHhCCC
Q 046803 435 NIMIQKGL 442 (580)
Q Consensus 435 ~~m~~~~~ 442 (580)
......+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 98876665
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.5e-07 Score=90.66 Aligned_cols=375 Identities=12% Similarity=0.095 Sum_probs=241.1
Q ss_pred hchHHHHHhccCChhHHHHHHccC---CCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHc
Q 046803 43 LTKLLSLVCDAGFITYAQRIFFCI---PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSN-YTFSAVIKSCAH 118 (580)
Q Consensus 43 ~~~ll~~~~~~~~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 118 (580)
.|+.. ..|+++.|...|-.. .++|.+-|..-..+|+..|++++|++=-.+-++ +.|+. -.|+..-.++.-
T Consensus 9 gnaa~----s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 9 GNAAF----SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFG 82 (539)
T ss_pred HHhhc----ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHh
Confidence 45555 888999999999754 347888999999999999999999887666655 45554 358888888889
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHcc------CCC-C------ChhHHHHHHHHHHhC
Q 046803 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR------MPD-K------SVVAWNSMISGYEQN 185 (580)
Q Consensus 119 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~------~~~-~------~~~~~~~li~~~~~~ 185 (580)
.|++++|...|..-++.. +.+...++-|.+++.. + ..+.+.|.. +.. | ....|..++..+-++
T Consensus 83 lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~--~-~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLE--D-YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred cccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhH--H-HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 999999999999888775 5567778888888711 1 111222211 000 0 112333333332221
Q ss_pred ----------CChhHHHHHHHHH-----HHCC-------CCC------------C----------hhHHHHHHHHHHhCC
Q 046803 186 ----------GFAKEAIGLFNLM-----RDFG-------VNP------------D----------STTCVCVLAACAQLG 221 (580)
Q Consensus 186 ----------g~~~~A~~~~~~m-----~~~g-------~~p------------~----------~~t~~~ll~a~~~~~ 221 (580)
.+...|.-.+... ...| ..| | ..-...+.++..+..
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 1111121111110 0001 111 0 011344555666666
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChH----------HHHHHHHHHHhcCChHH
Q 046803 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI----------AWTAMISGYGMHGYGTE 291 (580)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~ 291 (580)
+++.+.+-+....... .+..-++....+|...|.+.+....-....+.... +...+..+|.+.++++.
T Consensus 239 ~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 7777777777777664 55666677777787777777766665554432211 12223445666677888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhH
Q 046803 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV-EHHVCMVDLFGRAGLLNEAYKFVKDV 370 (580)
Q Consensus 292 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 370 (580)
|+..|.+....-..||.. .+....+++........ -+.|.. .-...-...+.+.|++.+|+..|.++
T Consensus 317 ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 888888766544444322 12223333333333321 233432 11122356677899999999999999
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 371 IGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 371 ~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+...| |...|..-..+|.+.|++..|+.-.+..++++|+....|..=+.++....+|+.|.+.|.+..+.+
T Consensus 385 Ikr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 385 IKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 98888 588899999999999999999999999999999999999998999999999999999998877654
No 79
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.05 E-value=7.8e-06 Score=81.86 Aligned_cols=214 Identities=14% Similarity=0.152 Sum_probs=138.2
Q ss_pred CChHHHHHHHHHHHHcCCCC------cHHHhhHHhhHhhhcCCHHHHHHHHHhccCCCh-------HHHHHHHHHHHhcC
Q 046803 221 GDIDLGRWVHEFIVGQGLDV------NVVLATSLINMYARCGNVSKAREIFDMMSELNV-------IAWTAMISGYGMHG 287 (580)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g 287 (580)
|+..+-...+.++++. +.| -...|..+.+.|-..|+++.|+.+|++..+-+- .+|..-...=.++.
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4455555666666654 122 235677889999999999999999999886332 35555556666788
Q ss_pred ChHHHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 046803 288 YGTEAVELFHRMRAHGVR----------P-------NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350 (580)
Q Consensus 288 ~~~~A~~~~~~m~~~g~~----------p-------d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 350 (580)
+++.|++++++....--. | ....|...+..--..|-++....+|+++..-.-..|. .....
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--ii~Ny 517 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--IIINY 517 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHH
Confidence 899999988876542111 1 1122333344444567788888888888743222333 22233
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCC--CC-HHHHHHHHHHHHh-c--CCchHHHHHHHHHHhcCCCCc--chHHHHHHHHH
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEK--PA-PAVWTAMLGACKM-H--KNFDLGVEVAEHLLSVEPENP--GHYVMLSNIYA 422 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~ll~~~~~-~--g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~y~ 422 (580)
...+-...-++++.++|++.++.- |+ ..+|+..+.-+.+ . ...+.|..+|+++++.-|+.. ..|...+..=.
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEE 597 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEE 597 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 444556778899999998888553 34 4678877765543 2 378999999999999776422 23333344444
Q ss_pred hcCChhHHHHHHHHH
Q 046803 423 LAGRMDRVEVVRNIM 437 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m 437 (580)
+-|.-..|..++++.
T Consensus 598 e~GLar~amsiyera 612 (835)
T KOG2047|consen 598 EHGLARHAMSIYERA 612 (835)
T ss_pred HhhHHHHHHHHHHHH
Confidence 567777788877774
No 80
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.99 E-value=4.2e-08 Score=93.46 Aligned_cols=249 Identities=8% Similarity=0.035 Sum_probs=163.9
Q ss_pred HHhCCCHHHHHHHHccCCCC----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHH
Q 046803 151 YAKSNNVDVARKVFDRMPDK----SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226 (580)
Q Consensus 151 y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 226 (580)
+.-.|++..++.-.+ .... +.....-+.++|...|+++.++ .+..... .|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777775444 2111 2234455677888888877554 3333322 56665655555555443444444
Q ss_pred HHHHHHHHHcCCC-CcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 046803 227 RWVHEFIVGQGLD-VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305 (580)
Q Consensus 227 ~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 305 (580)
..-+......... .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444333322222 33444444456778889999999988775 56667777888999999999999999999873 3
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHH
Q 046803 306 PNNVTFVAVLSACAH----AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVW 380 (580)
Q Consensus 306 pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 380 (580)
.| .+...+..++.. ...+.+|..+|+++.. ...+++.+.+.+.-+....|++++|.+++++++...|+ +.++
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 34 445555554433 3468999999999875 44578888899999999999999999999999988884 7788
Q ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHhcCCCCc
Q 046803 381 TAMLGACKMHKNF-DLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 381 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 411 (580)
..++......|+. +.+.+.+.++....|+.+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 8888888888877 677888888888888754
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.98 E-value=1.1e-06 Score=89.97 Aligned_cols=283 Identities=11% Similarity=0.029 Sum_probs=147.6
Q ss_pred HHHhCCCHHHHHHHHccCCC--CChh-HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH----h--C
Q 046803 150 FYAKSNNVDVARKVFDRMPD--KSVV-AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA----Q--L 220 (580)
Q Consensus 150 ~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~--~ 220 (580)
.+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|+.+++. .|+...|...+..+. . .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccccc
Confidence 34556666666666655433 2332 3334455566666666666666666654 244444444333333 1 1
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHH-HHHHHHHhccCCCh-HHHHHHHHHHHhcCChHHHHHHHHH
Q 046803 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS-KAREIFDMMSELNV-IAWTAMISGYGMHGYGTEAVELFHR 298 (580)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 298 (580)
.+.+...++++.+...- |.......+.-.+.....+. .+...+..+..+.+ .+++.+-..|.......-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 13444555555554432 11111111111111111111 22222233333333 3344444444433333333344443
Q ss_pred HHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHH
Q 046803 299 MRAH----G----------VRPNN--VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLN 361 (580)
Q Consensus 299 m~~~----g----------~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 361 (580)
.... + -.|.. .++..+...|.+.|++++|.++.++.+. ..|+ +..|..-...|-+.|+++
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHH
Confidence 3221 1 12222 2334455566777888888888877764 2454 677777777788888888
Q ss_pred HHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC--CCC-------cchHHHHHHHHHhcCChhHHH
Q 046803 362 EAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVE--PEN-------PGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 362 ~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~y~~~g~~~~a~ 431 (580)
+|.+.++.+-...+ |-.+-+-....+.+.|++++|.+.+....+.+ |.. ......-+.+|.+.|++..|.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88887766666655 44555555666677788888887777766544 211 011234577788888888888
Q ss_pred HHHHHHHh
Q 046803 432 VVRNIMIQ 439 (580)
Q Consensus 432 ~~~~~m~~ 439 (580)
+-|..+.+
T Consensus 326 k~~~~v~k 333 (517)
T PF12569_consen 326 KRFHAVLK 333 (517)
T ss_pred HHHHHHHH
Confidence 77666543
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=2.2e-07 Score=81.47 Aligned_cols=193 Identities=13% Similarity=0.074 Sum_probs=144.9
Q ss_pred hhHHhhHhhhcCCHHHHHHHHHhccCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh
Q 046803 245 ATSLINMYARCGNVSKAREIFDMMSEL---NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAH 320 (580)
Q Consensus 245 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~ 320 (580)
...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++.... .|+. ...|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHh
Confidence 334556788888888888888877753 3457778888888888888888888888773 4443 556666666777
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHH
Q 046803 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEV 399 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 399 (580)
.|.+++|.+.|+.........--..+|..++-+-.++|+++.|.+.|++.+...|+ +.+...+.......|++..|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 88888888888888765333223567777777778888888888888888877775 66777788888888888888888
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 400 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+++.....+.........+.+-...|+.+.+.+.=..+..
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888877776677777777778888888877776665544
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=1.5e-06 Score=80.40 Aligned_cols=313 Identities=12% Similarity=0.067 Sum_probs=175.5
Q ss_pred ChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHH---HHHHccCChHHHHHHHHHHHHhCCCCchHHH-H
Q 046803 70 DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI---KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ-A 145 (580)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~ 145 (580)
++.-.--+-..+.-+|++.+|+.-|...++. |+..|-.+. ..|...|+-..|..-+..+++. .||-..- -
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3334445566677778888888888777653 333333332 3455667777777777777664 4443221 1
Q ss_pred HHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHH
Q 046803 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225 (580)
Q Consensus 146 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 225 (580)
--...+.+.|.++.|..-|+.+.+.+.. -+....++.+.-..++-. .....+..+...|+...
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQN 173 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhh
Confidence 1234566777777777777766543221 001111111111111111 11223334455677778
Q ss_pred HHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046803 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS---ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302 (580)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 302 (580)
+......+++.. +-|...+..-..+|...|++..|+.=++... ..+..+.--+-..+...|+.+.++...++.++
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK- 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK- 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-
Confidence 888888777764 5677777777888888888888876555443 45666666777777888888888888887776
Q ss_pred CCCCCHHHHH----HH---------HHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHH
Q 046803 303 GVRPNNVTFV----AV---------LSACAHAGLVQEGHRVFASMRQEYGLLPG-----VEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 303 g~~pd~~t~~----~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~ 364 (580)
+.||....- .| +......+.|.++.+-.+...+. .|. ...+..+-..+...|++.+|+
T Consensus 252 -ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 252 -LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred -cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHH
Confidence 566653211 11 01122334444444444444321 222 122233344455556666666
Q ss_pred HHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 365 KFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 365 ~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
+...+.+.+.|| +.++.-=..+|.....++.|+.-|+.+.+.+++|.
T Consensus 328 qqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 328 QQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 666666666664 55555555666666666666666666666666553
No 84
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.96 E-value=1e-05 Score=80.95 Aligned_cols=160 Identities=12% Similarity=0.194 Sum_probs=101.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--
Q 046803 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN------VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-- 343 (580)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-- 343 (580)
++..|..-... ..|+..+-...|.+..+. +.|-. ..|..+...|-..|+++.|+.+|++..+. ..+.-
T Consensus 348 nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~v~d 423 (835)
T KOG2047|consen 348 NVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-PYKTVED 423 (835)
T ss_pred cHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHH
Confidence 34455443333 356677777777777663 44422 34667777788888888888888887642 22211
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHhHc--CCCC-----------------CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 344 -VEHHVCMVDLFGRAGLLNEAYKFVKDVI--GEKP-----------------APAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 344 -~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~p-----------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
..+|....++=.+..+++.|+++++++. |..| +..+|...+..--..|-++....+|+++
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4556666677777888888888887665 2211 1234666666666667777777777777
Q ss_pred HhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 046803 404 LSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 404 ~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 435 (580)
+++.--.|......+..+....-++++.++++
T Consensus 504 idLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 504 IDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77765556666666666666666666666665
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.91 E-value=3.9e-06 Score=84.10 Aligned_cols=257 Identities=11% Similarity=-0.065 Sum_probs=132.8
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhc
Q 046803 181 GYEQNGFAKEAIGLFNLMRDFGVNPDS-TTCVCVLAACAQ----LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255 (580)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 255 (580)
.+...|++++|.+.+++..+. .|+. ..+.. ...+.. .+..+.+.+.+.. .....+........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 445566667777766666553 2322 22221 112222 2333333333332 1111122233444555666677
Q ss_pred CCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHH
Q 046803 256 GNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV-RPNN--VTFVAVLSACAHAGLVQEGHR 329 (580)
Q Consensus 256 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~--~t~~~ll~a~~~~g~~~~a~~ 329 (580)
|++++|.+.+++..+ .+...+..+...|...|++++|...+++...... .|+. ..+..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777776653 3345566666777777777777777776665321 1222 233455566677777777777
Q ss_pred HHHHhHHhcCCCCCHHHH-H--HHHHHHHHcCCHHHHHHH---HHhHcCCCC---CHHHHHHHHHHHHhcCCchHHHHHH
Q 046803 330 VFASMRQEYGLLPGVEHH-V--CMVDLFGRAGLLNEAYKF---VKDVIGEKP---APAVWTAMLGACKMHKNFDLGVEVA 400 (580)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~ 400 (580)
+++.........+..... + .++.-+...|..+.+.+. .....+..| ..........++...|+.+.|..++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 777764211111111111 1 222222333322222221 111111101 1122234556667778888888888
Q ss_pred HHHHhcC-C--------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 401 EHLLSVE-P--------ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 401 ~~~~~~~-p--------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+.+.... . .........+.++...|++++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8776422 1 123445567778889999999999999887643
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.91 E-value=3.2e-05 Score=79.38 Aligned_cols=305 Identities=14% Similarity=0.145 Sum_probs=176.2
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHH
Q 046803 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS-TTCV 211 (580)
Q Consensus 136 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 211 (580)
.+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+...|...|....|+.+++.-....-.|+. ..+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3456778888888888888888888888887654 24457888888888888888888887766543222433 2333
Q ss_pred HHHHHHH-hCCChHHHHHHHHHHHH--------------------------------------------------cCCCC
Q 046803 212 CVLAACA-QLGDIDLGRWVHEFIVG--------------------------------------------------QGLDV 240 (580)
Q Consensus 212 ~ll~a~~-~~~~~~~a~~~~~~~~~--------------------------------------------------~~~~~ 240 (580)
..-..|. +.+..+++..+-.+++. .+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 3333332 33445555444444433 22 22
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhcc----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC---------
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMS----ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVRP--------- 306 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p--------- 306 (580)
|+.+.-.+.--|+..++++.|.+...+.. ..++..|..+.-.+...+++.+|+.+.+..... |..-
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 22222223333555566666666555443 245566666666666667777777766655432 1100
Q ss_pred -----C----HHHHHHHHHHHHh---------c--------------CCHHHHHHHHHHhH-------HhcC--------
Q 046803 307 -----N----NVTFVAVLSACAH---------A--------------GLVQEGHRVFASMR-------QEYG-------- 339 (580)
Q Consensus 307 -----d----~~t~~~ll~a~~~---------~--------------g~~~~a~~~~~~~~-------~~~~-------- 339 (580)
| ..|...++...-. . ++..++.+...++. +..+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0 0111111111110 0 00011111110000 0001
Q ss_pred -CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 340 -LLPG--------VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 340 -~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
..|+ ...|....+.+.+.+..++|...+.++-.+.| .+..|......+...|..++|.+.|..++.++|+
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 1111 12334455667777777788766667666666 4666777777778888889999999999999999
Q ss_pred CcchHHHHHHHHHhcCChhHHHH--HHHHHHhCC
Q 046803 410 NPGHYVMLSNIYALAGRMDRVEV--VRNIMIQKG 441 (580)
Q Consensus 410 ~~~~~~~l~~~y~~~g~~~~a~~--~~~~m~~~~ 441 (580)
++.....++.++.+.|+..-|.. ++..+.+.+
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 98899999999999888777777 777777654
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.7e-05 Score=73.80 Aligned_cols=289 Identities=13% Similarity=0.062 Sum_probs=171.0
Q ss_pred HHHHHHHhCCCHHHHHHHHccCCCC--ChhHHHH-HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC-
Q 046803 146 ALVNFYAKSNNVDVARKVFDRMPDK--SVVAWNS-MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG- 221 (580)
Q Consensus 146 ~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~- 221 (580)
+|.++....-.+++|++++.++... +-...|. +.-+|.+...++-+.+++.-..+. -||+ |+..=+.+|..-.
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl 232 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRL 232 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhh
Confidence 3444444445688888888887653 3344444 344677788888888887777664 3443 2222233332211
Q ss_pred -ChHHHHHH--------------HHHHHHcCC------------CC-----cHHHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 222 -DIDLGRWV--------------HEFIVGQGL------------DV-----NVVLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 222 -~~~~a~~~--------------~~~~~~~~~------------~~-----~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
+-..|.+- .+.+.+.++ -| -+..--.|+--|.+.+++++|..+.+.+.
T Consensus 233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC
Confidence 11111111 111222111 01 11223345666889999999999988886
Q ss_pred CCChHHHHHHHHHHHhcCC-------hHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 046803 270 ELNVIAWTAMISGYGMHGY-------GTEAVELFHRMRAHGVRPNNVT-FVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341 (580)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 341 (580)
..++.-|-.-.-.++..|+ ..-|.+.|+-.-+++..-|.+. --++.+++.-..++++...+++.+.. +=..
T Consensus 313 PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~N 391 (557)
T KOG3785|consen 313 PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTN 391 (557)
T ss_pred CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC
Confidence 5555444333333444443 4455555655444554444322 22344444555678888888888864 3344
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC-CCHHHHHHH-HHHHHhcCCchHHHHHHHHHHhcC-CCC-cchHHHH
Q 046803 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK-PAPAVWTAM-LGACKMHKNFDLGVEVAEHLLSVE-PEN-PGHYVML 417 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l 417 (580)
.|...+| +..+++..|.+.+|+++|-+.-+.+ .|..+|.++ ...|.+.+.++.|..++- +.+ |.+ ......+
T Consensus 392 dD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlI 467 (557)
T KOG3785|consen 392 DDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLI 467 (557)
T ss_pred cchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHH
Confidence 4555554 8899999999999999995544433 356666655 456688889988876654 333 332 2344566
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 418 SNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 418 ~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
++-+.+++.+--|.+.|+.+...+.
T Consensus 468 An~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 468 ANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHHHHHHHHHHhhhHHHccCC
Confidence 7889999999999999998876543
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=1.3e-07 Score=90.18 Aligned_cols=246 Identities=12% Similarity=0.067 Sum_probs=165.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHH
Q 046803 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259 (580)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 259 (580)
+-+.-.|++..++.-.+ .....-..+......+.+++..+|..+.+ ..++.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34555788888886655 22221122334566678888888886643 34444444 666666666665555545666
Q ss_pred HHHHHHHhcc-CC---ChHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 260 KAREIFDMMS-EL---NVIAWTA-MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 260 ~A~~~~~~~~-~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
.+..-++... ++ +-.++.. ....+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665443 22 1122222 224456679999999988653 35566677888999999999999999999
Q ss_pred HHhcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHhHcCC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 335 RQEYGLLPGVE---HHVCMVDLFGRAGLLNEAYKFVKDVIGE-KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 335 ~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
. .+..|.. ...+.+..+.-.+.+.+|..+|++.... .+++.+.+.+..+....|++++|+.+++++++.+|.+
T Consensus 158 ~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 158 Q---QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp H---CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred H---hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 6 3445532 2333444444445799999999776543 4678889999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 046803 411 PGHYVMLSNIYALAGRM-DRVEVVRNIMIQ 439 (580)
Q Consensus 411 ~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~ 439 (580)
+.+...++.+....|+. +.+.+.+..++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999998 667788888765
No 89
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=4e-07 Score=98.06 Aligned_cols=201 Identities=14% Similarity=0.160 Sum_probs=173.6
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--------CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSE--------LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 310 (580)
|-+...|-..|......+++++|++++++... .-...|.++++.-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44566788888888889999999999988763 23458999998888889889999999999874 222456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---HHHHHHHHHHH
Q 046803 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA---PAVWTAMLGAC 387 (580)
Q Consensus 311 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~ll~~~ 387 (580)
|..|...|.+.+..++|.++++.|.++++ -....|..+++.+.+.++-++|.+++.+++..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999776 56778999999999999999999999999966664 45566677777
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
.++|+.+++..+|+..+.-.|.....|..++++-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999988765
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=1.9e-05 Score=79.06 Aligned_cols=197 Identities=12% Similarity=-0.062 Sum_probs=118.4
Q ss_pred hhhHHHHHHHHHcCCCccHHHHHHHHHHHCCC-CCChhhHHH-HHHHHHccCChHHHHHHHHHHHHhCCCCchHHHH---
Q 046803 71 SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI-SPSNYTFSA-VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA--- 145 (580)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--- 145 (580)
...|..+...+...|+++++...+....+... .++...... ....+...|+++++.+.++.+++.. +.|...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 34566666677777888887776666554321 222222211 1223456788888988888888764 33444443
Q ss_pred HHHHHHHhCCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCC
Q 046803 146 ALVNFYAKSNNVDVARKVFDRMPDK---SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222 (580)
Q Consensus 146 ~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 222 (580)
.+.......+..+.+.+.++..... ....+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 1222222345566666666543222 22344455567778888888888888887753 3344566677777778888
Q ss_pred hHHHHHHHHHHHHcCC-CCcH--HHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 223 IDLGRWVHEFIVGQGL-DVNV--VLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 223 ~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
+++|...+....+... .++. ..+..+...+...|++++|.++|++..
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 8888888877776531 1222 234456677777777777777777754
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=3.5e-06 Score=76.53 Aligned_cols=372 Identities=12% Similarity=0.016 Sum_probs=233.1
Q ss_pred ccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHH-HHHHHHccCChHHHHH
Q 046803 52 DAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA-VIKSCAHLSILNLGRA 127 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~ 127 (580)
+..++++|.+++..-.+ ++....+.|...|.+..++..|-.+|+++-.. .|...-|.. -..++-+.+.+..|..
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 88899999999876554 35566778888899999999999999998663 455444432 2344556778888888
Q ss_pred HHHHHHHhCCCCchHHHHHHH----HHHHhCCCHHHHHHHHccCCC-CChhHHHHHHHHHHhCCChhHHHHHHHHHHHC-
Q 046803 128 VHCHVFVSGYDSDLHVQAALV----NFYAKSNNVDVARKVFDRMPD-KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF- 201 (580)
Q Consensus 128 ~~~~~~~~g~~~~~~~~~~li----~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 201 (580)
+...|... ....+..+ ......+++..++.+.++.+. .+..+.+.......+.|++++|++-|+...+-
T Consensus 100 V~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 100 VAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 87777432 12222111 223456889999999999984 56667777777778999999999999988765
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-------------c---------------HHHhhHHhhHhh
Q 046803 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV-------------N---------------VVLATSLINMYA 253 (580)
Q Consensus 202 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~li~~y~ 253 (580)
|.. ....|+..+.. .+.++.+.|.....+++++|+.. | +..+|.-...+.
T Consensus 175 Gyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey 252 (459)
T KOG4340|consen 175 GYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY 252 (459)
T ss_pred CCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence 444 44567665544 46789999999999999886521 1 122333344567
Q ss_pred hcCCHHHHHHHHHhccC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046803 254 RCGNVSKAREIFDMMSE-----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328 (580)
Q Consensus 254 ~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 328 (580)
+.|+.+.|.+.+..|+. .|++|...+.-.= ..+++.+..+-++-+.+... -...||..++-.|++..-++.|-
T Consensus 253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred hcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHH
Confidence 88999999999999984 4677766554322 24555555555555555433 34578999999999998888888
Q ss_pred HHHHHhHHhcCCC-CCHHHHHHHHHHHH-HcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCC---chHHHHHHHH
Q 046803 329 RVFASMRQEYGLL-PGVEHHVCMVDLFG-RAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKN---FDLGVEVAEH 402 (580)
Q Consensus 329 ~~~~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~ 402 (580)
.++.+-... ... .+...|+ |++++. ..-..++|.+-+...-+.-.+ ......-+.--+..++ ...+++-|++
T Consensus 331 DvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~ 408 (459)
T KOG4340|consen 331 DVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDE 408 (459)
T ss_pred HHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 877543210 111 1233343 344443 344566666555211110000 0011111111111221 1223333444
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 403 ~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+++- ......-+..|.+..++..++++|+.-.+
T Consensus 409 ~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 409 TLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 44432 12455667788899999999999987654
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.82 E-value=2.8e-05 Score=88.36 Aligned_cols=15 Identities=20% Similarity=-0.002 Sum_probs=9.2
Q ss_pred chHHHHHHHHHHhCC
Q 046803 22 KPLQQVHAHLIVAGY 36 (580)
Q Consensus 22 ~~~~~~~~~~~~~g~ 36 (580)
..+..+...+.+.|+
T Consensus 292 ~~~~~~L~~l~~~~l 306 (903)
T PRK04841 292 ENGQMRLEELERQGL 306 (903)
T ss_pred CcHHHHHHHHHHCCC
Confidence 345666666666665
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=5.6e-07 Score=81.01 Aligned_cols=148 Identities=7% Similarity=0.057 Sum_probs=115.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCC
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 359 (580)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3457778887776444433221 11 012235666777777777664 234468899999999999999
Q ss_pred HHHHHHHHHhHcCCCC-CHHHHHHHHHHH-HhcCC--chHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 046803 360 LNEAYKFVKDVIGEKP-APAVWTAMLGAC-KMHKN--FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 360 ~~~A~~~~~~~~~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 435 (580)
+++|.+.|++++...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..|+..+...|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998888 478888888864 67777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 046803 436 IMIQKG 441 (580)
Q Consensus 436 ~m~~~~ 441 (580)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 998754
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.81 E-value=6.7e-06 Score=93.32 Aligned_cols=324 Identities=10% Similarity=-0.023 Sum_probs=206.1
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC----C----C--h--hHHHHHHHHHHhC
Q 046803 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD----K----S--V--VAWNSMISGYEQN 185 (580)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~----~--~--~~~~~li~~~~~~ 185 (580)
..|+++.+...+..+-......++.........+...|++++|...++.... . + . .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 3456655555544431111112223334455566778999998888765421 1 1 1 1222234456689
Q ss_pred CChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhCCChHHHHHHHHHHHHc----CC-CCcHHHhhHHhhHhhhcC
Q 046803 186 GFAKEAIGLFNLMRDFGVNPDS----TTCVCVLAACAQLGDIDLGRWVHEFIVGQ----GL-DVNVVLATSLINMYARCG 256 (580)
Q Consensus 186 g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~y~~~g 256 (580)
|++++|...+++....--..+. .....+...+...|+++.|...+.+.... |- .........+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999988763111121 23445556677899999999998887743 21 112334566777888999
Q ss_pred CHHHHHHHHHhccC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhc
Q 046803 257 NVSKAREIFDMMSE-------L----NVIAWTAMISGYGMHGYGTEAVELFHRMRAH--GVRPN--NVTFVAVLSACAHA 321 (580)
Q Consensus 257 ~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd--~~t~~~ll~a~~~~ 321 (580)
++++|...+++..+ + ....+..+...+...|++++|...+++.... ...+. ...+..+.......
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 99999998876542 1 1223445566677789999999999887652 11222 23344455677889
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHhHcCCCC-CH----HHHHHHHHHHHhcC
Q 046803 322 GLVQEGHRVFASMRQEYGLLPGVEHH-----VCMVDLFGRAGLLNEAYKFVKDVIGEKP-AP----AVWTAMLGACKMHK 391 (580)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~----~~~~~ll~~~~~~g 391 (580)
|+.++|.+.+..+............+ ...+..+...|+.+.|.+.+.+.....+ .. ..+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 99999999988875421111111111 1122445668999999999855543221 11 12456777888999
Q ss_pred CchHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 392 NFDLGVEVAEHLLSVE------PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 392 ~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
++++|...++++++.. +....++..++.+|.+.|+.++|...+.+..+..
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999988643 1123467788899999999999999999988754
No 95
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=2.8e-06 Score=82.12 Aligned_cols=213 Identities=11% Similarity=0.013 Sum_probs=122.8
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcC-CHHHHHHHHHhccC---CChHHHHHHHHHHHhcCCh--HHHHHH
Q 046803 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG-NVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYG--TEAVEL 295 (580)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~ 295 (580)
..++|..+..++++.. +.+..+|+.-..++.+.| +++++...++++.+ .+..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3344444444444432 223333333333333334 34555555554442 2333444443333334432 455666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHH
Q 046803 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA---GL----LNEAYKFVK 368 (580)
Q Consensus 296 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~ 368 (580)
++++.+...+ |..+|....-++.+.|+++++.+.++++++. . ..+...|+.....+.+. |. .++++++..
T Consensus 131 ~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 131 TRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 6666653222 4455555555566666666666666666542 1 12344444444333333 22 356777777
Q ss_pred hHcCCCC-CHHHHHHHHHHHHhc----CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC------------------
Q 046803 369 DVIGEKP-APAVWTAMLGACKMH----KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG------------------ 425 (580)
Q Consensus 369 ~~~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g------------------ 425 (580)
+++...| |...|+.+...+... ++..+|...+.++.+.+|.++.++..|+++|+...
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 8888888 578899988888773 44567889999998889999999999999998642
Q ss_pred ChhHHHHHHHHHH
Q 046803 426 RMDRVEVVRNIMI 438 (580)
Q Consensus 426 ~~~~a~~~~~~m~ 438 (580)
..++|.++++.+.
T Consensus 288 ~~~~a~~~~~~l~ 300 (320)
T PLN02789 288 DSTLAQAVCSELE 300 (320)
T ss_pred cHHHHHHHHHHHH
Confidence 2367888888774
No 96
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.79 E-value=3.7e-05 Score=77.36 Aligned_cols=354 Identities=10% Similarity=0.103 Sum_probs=221.3
Q ss_pred HHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Q 046803 81 NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160 (580)
Q Consensus 81 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 160 (580)
+...|+-++|.+..+.-.+..++ +.+.|..+.-......++++|.+.|..+++.+ +.|...+.-|.-.-+..|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 34458888898888777665444 55667666666667788999999999998876 45666776666666666777666
Q ss_pred HHHHccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhHHHHHH------HHHHhCCChHHHHHHH
Q 046803 161 RKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-VNPDSTTCVCVL------AACAQLGDIDLGRWVH 230 (580)
Q Consensus 161 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll------~a~~~~~~~~~a~~~~ 230 (580)
...-.+..+ .....|..++.++.-.|++..|..+++...+.. -.|+...+.-.. ......|.++.|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 555544443 355789999999999999999999999887764 245655544332 2334567777776665
Q ss_pred HHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CChHHHHHHH-HHHHhcCChHHHH-HHHHHHHhCCCCC
Q 046803 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--LNVIAWTAMI-SGYGMHGYGTEAV-ELFHRMRAHGVRP 306 (580)
Q Consensus 231 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~~p 306 (580)
...... +......-..-.+.+.+.+++++|..++..+.. ||...|.-.. .++.+-.+.-+++ .+|....+. .|
T Consensus 209 ~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~ 285 (700)
T KOG1156|consen 209 LDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YP 285 (700)
T ss_pred HhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Cc
Confidence 544332 222333445567788899999999999998876 5555554443 4443333344444 666665542 11
Q ss_pred CHHHHH-HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhHc-C---------
Q 046803 307 NNVTFV-AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL---LNEAYKFVKDVI-G--------- 372 (580)
Q Consensus 307 d~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~-~--------- 372 (580)
-...-. .=++........+....++..+.++ |+++- +..+...|-.-.. +++-..-+...+ +
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccc
Confidence 111100 0111111122223333444444443 55443 2223333322111 111111111222 1
Q ss_pred ---CCCCHHHHH--HHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 373 ---EKPAPAVWT--AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 373 ---~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
..|....|. -+...+-..|+++.|...++.+++.-|.-+..|..-+.++...|.+++|...+++..+.+..
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 145555555 56778889999999999999999999988888989999999999999999999999876544
No 97
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.9e-05 Score=78.47 Aligned_cols=383 Identities=13% Similarity=0.093 Sum_probs=198.4
Q ss_pred HHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHH--HHH--HHh
Q 046803 78 IIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL--VNF--YAK 153 (580)
Q Consensus 78 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--i~~--y~~ 153 (580)
++.+.++|++++|+....+++..+ +-|...+..-+-+..+.+.+++|..+.+ ..+. ..+++.. =.+ ..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 455667788888888888887654 3344456666666777777777774322 2221 1111111 223 346
Q ss_pred CCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHH
Q 046803 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD-STTCVCVLAACAQLGDIDLGRWVHEF 232 (580)
Q Consensus 154 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~ 232 (580)
.+..|+|...++.....+..+...-...+-+.|++++|+++|+.+.+.+.+-- ...-..++.+-... .+. .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----H
Confidence 78888888888855555554555556677788888888888888876643211 11112222111110 010 1
Q ss_pred HHHcCCCC--cHHHhhHHhhHhhhcCCHHHHHHHHHhcc--------CC--C---hH-----HHHHHHHHHHhcCChHHH
Q 046803 233 IVGQGLDV--NVVLATSLINMYARCGNVSKAREIFDMMS--------EL--N---VI-----AWTAMISGYGMHGYGTEA 292 (580)
Q Consensus 233 ~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~--~---~~-----~~~~li~~~~~~g~~~~A 292 (580)
+......| +-..+-.....+...|++.+|++++.... +. + .. .--.|.-.+...|+..+|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 11111111 11222223345666777888877777662 11 1 11 111233455667788888
Q ss_pred HHHHHHHHhCCCCCCHHH----HHHHHHHH---------------------------------------------HhcCC
Q 046803 293 VELFHRMRAHGVRPNNVT----FVAVLSAC---------------------------------------------AHAGL 323 (580)
Q Consensus 293 ~~~~~~m~~~g~~pd~~t----~~~ll~a~---------------------------------------------~~~g~ 323 (580)
..+|...+... .+|... -|.|+..- ...+.
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88777777653 223311 11111110 00111
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCCchHHHHHH
Q 046803 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLF-GRAGLLNEAYKFVKDVIGEKPA--PAVWTAMLGACKMHKNFDLGVEVA 400 (580)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~ 400 (580)
.+.+.++.... .+..|....-+.+..++ ++.....+|.+++.+...-.|+ ..+...++..-...|+++.|.+++
T Consensus 323 ~~q~r~~~a~l---p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 323 MDQVRELSASL---PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHHHhC---CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 22222222111 12233322222222222 2223466777777555555564 345556666778889999999998
Q ss_pred H--------HHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHH
Q 046803 401 E--------HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472 (580)
Q Consensus 401 ~--------~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 472 (580)
. .+.+..- .|.+...+...|.+.++-+.|..++......-....++. +...........-+..||+.++
T Consensus 400 ~~~~~~~~ss~~~~~~-~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s--~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKH-LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS--IALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhhhhcc-ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc--hHHHhHHHHHhHHHHhcCchHH
Confidence 8 3333332 356777778888888888888888887654311111111 0000000001111345688888
Q ss_pred HHHHHHHHHH
Q 046803 473 IYQYLDELMG 482 (580)
Q Consensus 473 ~~~~l~~l~~ 482 (580)
+.+.+++|.+
T Consensus 477 a~s~leel~k 486 (652)
T KOG2376|consen 477 ASSLLEELVK 486 (652)
T ss_pred HHHHHHHHHH
Confidence 8888888765
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.78 E-value=8.9e-07 Score=82.93 Aligned_cols=181 Identities=10% Similarity=0.040 Sum_probs=109.9
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CC-h---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMSE--LN-V---IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN--VTFV 312 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~ 312 (580)
....+..+...|.+.|++++|...|+++.+ |+ . .+|..+...|.+.|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 445556666667777777777777776653 22 1 35566666777777777777777777653211111 1333
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHH
Q 046803 313 AVLSACAHA--------GLVQEGHRVFASMRQEYGLLPGV-EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383 (580)
Q Consensus 313 ~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l 383 (580)
.+..++... |+.++|.+.|+.+.+. .|+. ..+..+... +..... . ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~---~---------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNR---L---------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHH---H---------HHHHHHH
Confidence 333444433 5566666666666543 2321 111111110 000000 0 0011245
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 384 LGACKMHKNFDLGVEVAEHLLSVEPEN---PGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 384 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
...+...|++++|+..++++++..|++ +..+..++.+|...|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667888999999999999999887764 468889999999999999999999888664
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.76 E-value=3.3e-07 Score=78.04 Aligned_cols=122 Identities=13% Similarity=0.079 Sum_probs=87.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcC
Q 046803 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372 (580)
Q Consensus 294 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 372 (580)
.+|++..+ +.|+. +..+..++...|++++|...|+.+.. ..| +...|..+..++.+.|++++|...|++++.
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555554 34443 44456667778888888888887763 334 577777788888888888888888877777
Q ss_pred CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 373 EKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 373 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
..| ++..|..+..++...|++++|+..|+++++..|+++..+.....+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 777 47777888888888888888888888888888888777766655543
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=7.8e-07 Score=87.99 Aligned_cols=248 Identities=12% Similarity=0.013 Sum_probs=179.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHH
Q 046803 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259 (580)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 259 (580)
.-+.++|+..+|.-.|+...+.. +-+...|..|...-...++-..|+..+.+.++.. +.+..+.-+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34577888888888888887753 3355678777777777788888888888888876 667788888888888888888
Q ss_pred HHHHHHHhccC-CChHHHHHHH---------HHHHhcCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046803 260 KAREIFDMMSE-LNVIAWTAMI---------SGYGMHGYGTEAVELFHRMR-AHGVRPNNVTFVAVLSACAHAGLVQEGH 328 (580)
Q Consensus 260 ~A~~~~~~~~~-~~~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 328 (580)
+|.+.++.-.. .-...|...- ..+.......+..++|-++. +.+..+|......|.-.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 88888775421 0000000000 11111122344555555554 4554466666677777788899999999
Q ss_pred HHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 046803 329 RVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406 (580)
Q Consensus 329 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 406 (580)
..|+.+. .++| |...||.|.-.++...+.++|++.|++++.++|. +.++..|.-+|...|.+++|...|-.++.+
T Consensus 451 Dcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999997 4567 5889999999999999999999999999999998 778889999999999999999999998876
Q ss_pred CCCC----------cchHHHHHHHHHhcCChhHHHH
Q 046803 407 EPEN----------PGHYVMLSNIYALAGRMDRVEV 432 (580)
Q Consensus 407 ~p~~----------~~~~~~l~~~y~~~g~~~~a~~ 432 (580)
.+.+ -.+|..|=.++...++.|.+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 5441 1345555555555555554433
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.71 E-value=5.7e-05 Score=70.20 Aligned_cols=309 Identities=10% Similarity=0.021 Sum_probs=198.4
Q ss_pred hhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHH---HHHHcCCCccHHHHHHHHHHHCCCCCChhhHH-HHHHH
Q 046803 40 RSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFS-AVIKS 115 (580)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a 115 (580)
..+.+.|+ ..+++.+|+.-|....+-|+..|.++- ..|...|+...|+.=|.+.++ .+||-..-. .--..
T Consensus 42 lElGk~ll----a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELL----ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHH----HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchh
Confidence 34566677 899999999999999888888887775 568889999999999998887 588854321 11233
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHH
Q 046803 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195 (580)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 195 (580)
+.+.|.++.|.+-|+.+++....... ...++.+.--.++-+.+ ...+..+..+|+...|++..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHH
Confidence 56889999999999999987532111 11112221111211111 12233344566666666666
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChH-
Q 046803 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI- 274 (580)
Q Consensus 196 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~- 274 (580)
..+++.. +-|...+..-..+|...|.+..|..=+....+.. ..+....--+-..+...|+.+.++...++..+-|+.
T Consensus 179 ~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 179 THLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 6666531 2344455555566666666666665555555543 334444444555566666666666666655542211
Q ss_pred -----HHHHH---------HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 275 -----AWTAM---------ISGYGMHGYGTEAVELFHRMRAHGVRPNNVT---FVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 275 -----~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
.|-.+ +......++|.++++-.+...+.......++ +..+-.++...|.+.+|++.-.+..
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL-- 334 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL-- 334 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH--
Confidence 11111 2234567888889988888877543322333 3444556777899999999988886
Q ss_pred cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 338 YGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 338 ~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
.+.|+ +.++.--..+|.-...+++|+.-|+.+....++
T Consensus 335 -~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 335 -DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred -hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 56675 888888889999999999999999888877765
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.2e-05 Score=79.12 Aligned_cols=346 Identities=11% Similarity=0.014 Sum_probs=200.3
Q ss_pred HHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCH
Q 046803 79 IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD-LHVQAALVNFYAKSNNV 157 (580)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~ 157 (580)
.+....|+++.|+.+|-+...... +|..-|+.-..+++..|++++|.+=-.+.++. .|+ ..-|+-+..+..-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 345678999999999999877543 37777888888999999999887765555554 444 45788888888888999
Q ss_pred HHHHHHHccCCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHH-HCCCCCC--------hhHHHHHHHHHHhC-----
Q 046803 158 DVARKVFDRMPDK---SVVAWNSMISGYEQNGFAKEAIGLFNLMR-DFGVNPD--------STTCVCVLAACAQL----- 220 (580)
Q Consensus 158 ~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~--------~~t~~~ll~a~~~~----- 220 (580)
++|+.-|.+-.+. |...++-+..++.... ++.+.|..-. -.++.-+ ...|..++...-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999876653 4566777777662110 0111111000 0001111 11233333222111
Q ss_pred --CChHHHHHHHHHHHHcC---------------CCC------------c----------HHHhhHHhhHhhhcCCHHHH
Q 046803 221 --GDIDLGRWVHEFIVGQG---------------LDV------------N----------VVLATSLINMYARCGNVSKA 261 (580)
Q Consensus 221 --~~~~~a~~~~~~~~~~~---------------~~~------------~----------~~~~~~li~~y~~~g~~~~A 261 (580)
.+.....+.+..+...+ ..| | ..-...+.++..+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 01111111211111110 011 0 01123345555555666666
Q ss_pred HHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046803 262 REIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP--N----NVTFVAVLSACAHAGLVQEGHRVFAS 333 (580)
Q Consensus 262 ~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d----~~t~~~ll~a~~~~g~~~~a~~~~~~ 333 (580)
.+.+....+ .++.-++....+|...|.+.+....-....+.|-.. | ...+..+..++.+.++.+.|..+|.+
T Consensus 244 ~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 244 IQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 666655543 233334455556666666666555555544433210 0 11222233355556667777777776
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP-AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 334 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
....+ ..|+ .+.+....+++........-+.|+. .-...=...+.+.|++..|+..|.+++..+|+|+.
T Consensus 324 aLte~-Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 324 ALTEH-RTPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred Hhhhh-cCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 65432 1222 2223344445554443333344542 22334466788999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 413 HYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.|...+-+|.+.|.+..|.+-.+...+.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 9999999999999999999987777665
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.71 E-value=4.2e-07 Score=77.42 Aligned_cols=108 Identities=12% Similarity=0.088 Sum_probs=94.6
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 329 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
.++++.. .+.|+ .+..+...+...|++++|.+.|+..+...| +...|..+..++...|++++|+..|+++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455544 33455 355678889999999999999988888888 58889999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 408 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
|+++..+..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987754
No 104
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=5e-05 Score=78.21 Aligned_cols=356 Identities=12% Similarity=0.086 Sum_probs=221.8
Q ss_pred ChhhhchHHH--HHhccCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHC-C--------CCCChh
Q 046803 39 SRSMLTKLLS--LVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-N--------ISPSNY 107 (580)
Q Consensus 39 ~~~~~~~ll~--~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~ 107 (580)
|..+-.+++. .|..-|+++.|.+-.+.+. +-..|..|.+.+++..+.+-|.-++-.|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4455555542 3446679999988887775 4567999999999999998888777666432 1 1232 2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCC-ChhHHHHHHHHHHhCC
Q 046803 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK-SVVAWNSMISGYEQNG 186 (580)
Q Consensus 108 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g 186 (580)
+=..+.-.....|.+++|+.+|.+..+.+ .|=..|-..|.+++|.++-+.-..- =..||..-..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 22223333457899999999999887654 2445678889999999987653321 1235666666666678
Q ss_pred ChhHHHHHHHHHH----------HCC---------CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhH
Q 046803 187 FAKEAIGLFNLMR----------DFG---------VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247 (580)
Q Consensus 187 ~~~~A~~~~~~m~----------~~g---------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 247 (580)
+.+.|++.|++.. ... -.-|...|.-...-....|..+.|..+|....+ |-+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 8888888877632 111 012334444444455566777777777766543 456
Q ss_pred HhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--------
Q 046803 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA-------- 319 (580)
Q Consensus 248 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~-------- 319 (580)
++...+-.|+.++|-++-++- .|..+...+..-|-..|++.+|...|.+... |...|..|-
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHH
Confidence 777777888888888876653 4556666788888889999999998887643 222222222
Q ss_pred -------hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc------------CCCCCHHHH
Q 046803 320 -------HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI------------GEKPAPAVW 380 (580)
Q Consensus 320 -------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------~~~p~~~~~ 380 (580)
...+.-.|-++|++. |.. ....+..|-++|.+.+|+++--+.- ....|+...
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 122333444555443 211 1124556778888887777542221 222356555
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHh----------------------cCCCC---------cchHHHHHHHHHhcCChhH
Q 046803 381 TAMLGACKMHKNFDLGVEVAEHLLS----------------------VEPEN---------PGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 381 ~~ll~~~~~~g~~~~a~~~~~~~~~----------------------~~p~~---------~~~~~~l~~~y~~~g~~~~ 429 (580)
+--..-+..+.++++|..++-.+.+ +.|.. ......++..+.++|.+..
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~ 1163 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHA 1163 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHH
Confidence 5555566666677776665543321 11111 2356678899999999888
Q ss_pred HHHHHH
Q 046803 430 VEVVRN 435 (580)
Q Consensus 430 a~~~~~ 435 (580)
|.+-|.
T Consensus 1164 AtKKfT 1169 (1416)
T KOG3617|consen 1164 ATKKFT 1169 (1416)
T ss_pred HHHHHh
Confidence 876554
No 105
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=7.6e-05 Score=69.67 Aligned_cols=370 Identities=14% Similarity=0.035 Sum_probs=226.4
Q ss_pred ccCChhHHHHHHccCCC------CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHH
Q 046803 52 DAGFITYAQRIFFCIPS------PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 125 (580)
...++..|+.+++--.. .++..| +...+.+.|++++|+..|.-+... -.|+...+..+.....-.|.+.+|
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHH
Confidence 67788999888864332 122233 456778899999999999988775 345666666666555667888888
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046803 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205 (580)
Q Consensus 126 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (580)
.++-... +.++..-..|.+.-.+.++-++-..+-+.+.+.. .---+|.+..-..-.+.+|+++|.+.... .|
T Consensus 111 ~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ 182 (557)
T KOG3785|consen 111 KSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NP 182 (557)
T ss_pred HHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Ch
Confidence 8765433 3344555566677778888777666665554422 22223444433445689999999999875 35
Q ss_pred ChhHHHHHHH-HHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh--cCCHHHHH--HHHHhcc----------C
Q 046803 206 DSTTCVCVLA-ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR--CGNVSKAR--EIFDMMS----------E 270 (580)
Q Consensus 206 ~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A~--~~~~~~~----------~ 270 (580)
+-...+.-+. +|.+..-++-+.++++-.++. ++.+....|....-..+ .|+..+++ ++-+... +
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 5555555444 456777778888888777665 35555556655444333 23332222 2222111 0
Q ss_pred CC---------------------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCCH
Q 046803 271 LN---------------------VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA-----HAGLV 324 (580)
Q Consensus 271 ~~---------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~-----~~g~~ 324 (580)
.| +.+--.|+-.|.++++..+|..+.+++.- ..|-....-.+..+-. ....+
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 11 11233455567888999999988887643 3444444444433221 11224
Q ss_pred HHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcC-C-CCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 046803 325 QEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIG-E-KPAPAVWTAMLGACKMHKNFDLGVEVAE 401 (580)
Q Consensus 325 ~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 401 (580)
.-|.+.|+..-. .+..-| +.--.++...+.-..++++.+..+ ..+. . ..|...-..+..+....|++.+|+++|-
T Consensus 340 KiAqqffqlVG~-Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl-nSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 340 KIAQQFFQLVGE-SALECDTIPGRQSMASYFFLSFQFDDVLTYL-NSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHhcc-cccccccccchHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 556676665432 233322 223345556666667888888877 4442 1 2233333367889999999999999998
Q ss_pred HHHhcCCCCcchHH-HHHHHHHhcCChhHHHHHHHHH
Q 046803 402 HLLSVEPENPGHYV-MLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 402 ~~~~~~p~~~~~~~-~l~~~y~~~g~~~~a~~~~~~m 437 (580)
++...+-.|..+|- .|+.+|.+.++.+.|+.++-++
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 88776644555554 5788999999999998876554
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=9.4e-07 Score=89.65 Aligned_cols=191 Identities=16% Similarity=0.158 Sum_probs=164.4
Q ss_pred CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 237 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
+++|-...-..+...+.++|-...|..+|++. ..|.-.|..|...|+..+|..+..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34666667778899999999999999999985 6788899999999999999999988887 5789999999988
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~ 395 (580)
...+..-+++|+++++....+ .-..+.....+.++++++.+.++..+.+.| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888878889999998876532 111223333457999999999999998888 58899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
|.+.|.....++|++...|++++.+|.+.|+..+|...+++..+-+-
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999988773
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.69 E-value=8.1e-06 Score=85.63 Aligned_cols=395 Identities=12% Similarity=-0.006 Sum_probs=211.2
Q ss_pred HHHHHHHHHhCCCCChh-hhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHC
Q 046803 25 QQVHAHLIVAGYGRSRS-MLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS 100 (580)
Q Consensus 25 ~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 100 (580)
..+|..+....++++-. .+..|=.-|...++...|.+.|+..-+ .|..+|......|++..+++.|..+.-..-+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 34444444444444322 333333333333477778888876543 56677888888888888888888772221111
Q ss_pred -CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHH--
Q 046803 101 -NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS-- 177 (580)
Q Consensus 101 -g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~-- 177 (580)
....-...|..+--.+...++...+..-|+..++.. +.|...|..|..+|.++|++..|.++|++...-++.+|-.
T Consensus 556 a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 556 APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 000111123333333556677777777777777665 4567788888888888888888888887766544333222
Q ss_pred -HHHHHHhCCChhHHHHHHHHHHHC------CCCCChhHHHHHHHHHHhCCChHHHHHHH-------HHHHHcCCCCcHH
Q 046803 178 -MISGYEQNGFAKEAIGLFNLMRDF------GVNPDSTTCVCVLAACAQLGDIDLGRWVH-------EFIVGQGLDVNVV 243 (580)
Q Consensus 178 -li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~-------~~~~~~~~~~~~~ 243 (580)
....-+..|.+++|+..+...... +..--..++..+...+...|-..++..++ .-........+..
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~ 714 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL 714 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 122345678888888877766532 11111223333333333333222333332 2222222222222
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccCCChH--HHHHHHHH-HHhcCCh---H---HHHHHHHHHHhCCCCCCHHHHHHH
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSELNVI--AWTAMISG-YGMHGYG---T---EAVELFHRMRAHGVRPNNVTFVAV 314 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~pd~~t~~~l 314 (580)
.|-.+. +|..+|-... |+.+ .+..++.. +-..+.. + -+.+.+-.-+. ...+..++..|
T Consensus 715 ~Wi~as----------dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNL 781 (1238)
T KOG1127|consen 715 QWIVAS----------DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNL 781 (1238)
T ss_pred HHHHHh----------HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHH
Confidence 222222 2233333332 3211 11111111 1111111 1 01111111111 11123333333
Q ss_pred HHHHHh----cC----CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHH
Q 046803 315 LSACAH----AG----LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLG 385 (580)
Q Consensus 315 l~a~~~----~g----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~ 385 (580)
+..|.+ .| +...|...+...++. ...+...|+.|.-+ ...|.+.-|.-.|-+..-..| ...+|..+..
T Consensus 782 Ginylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nlgv 858 (1238)
T KOG1127|consen 782 GINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGV 858 (1238)
T ss_pred hHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccce
Confidence 333322 11 233566666665532 12345556655444 666788888877766665566 5778888888
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
.|.++.+++-|...|.+...++|.|...+...+.+-...|+.-++..+|..
T Consensus 859 L~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 859 LVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred eEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999888888777777788888888877766
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=3e-06 Score=90.18 Aligned_cols=140 Identities=7% Similarity=0.049 Sum_probs=111.2
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHH
Q 046803 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHV 348 (580)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 348 (580)
.++..+-.|.....+.|..++|..+++...+ +.||.. ....+..++.+.+.+++|....++... ..| +.....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3477788888888889999999999998888 567764 556677788889999999988888874 345 477777
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHH
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 415 (580)
.+..++.+.|++++|.++|++.+...|+ ..+|.++..++...|+.++|...|+++++...+-...|.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 8888888999999999999888766665 788888888899999999999999998887654344443
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.00012 Score=77.00 Aligned_cols=214 Identities=14% Similarity=0.170 Sum_probs=124.9
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 046803 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234 (580)
Q Consensus 155 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 234 (580)
+.++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+. .|+..|..+++.+.+.|.+++-..++....
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344444444444333 467999999999999999999887553 377889999999999999999999888887
Q ss_pred HcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC------------
Q 046803 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH------------ 302 (580)
Q Consensus 235 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------ 302 (580)
+..-+|. +-+.|+-+|++.+++.+-++... -||+.-......-+...|.++.|.-+|.....-
T Consensus 1161 kk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1161 KKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGE 1235 (1666)
T ss_pred HhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7765554 45678899999999988776643 234433344444444444444443333321100
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHhHcC
Q 046803 303 --------GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL--PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372 (580)
Q Consensus 303 --------g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 372 (580)
.-..+..||-.+-.+|...+.+.-|. | +|+. ....-..-|+..|-..|-++|-+.+++..++
T Consensus 1236 yQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ-----i---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1236 YQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ-----I---CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH-----h---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 00112344544545554444333221 1 1222 2233444556666666666666666655555
Q ss_pred CCC-CHHHHHHHHHHHHh
Q 046803 373 EKP-APAVWTAMLGACKM 389 (580)
Q Consensus 373 ~~p-~~~~~~~ll~~~~~ 389 (580)
.+. .-..|.-|.-.|.+
T Consensus 1308 LERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1308 LERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 443 23344444444444
No 110
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.63 E-value=1.1e-06 Score=73.57 Aligned_cols=119 Identities=6% Similarity=0.040 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
....-.+...+...|++++|..+|+-.....| +..-|..|..+|...|++++|+..|.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 44444566778899999999999966667788 47779999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 046803 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 485 (580)
..|+.+.|.+.|+..+... ..+|+..++.+..+.++..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999887631 145776666666666655543
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=6.1e-06 Score=74.30 Aligned_cols=154 Identities=7% Similarity=0.098 Sum_probs=116.5
Q ss_pred hhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046803 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 328 (580)
+-.|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345777777777655443332221 01223566778888888877742 346678888888999999999999
Q ss_pred HHHHHhHHhcCCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 329 RVFASMRQEYGLLP-GVEHHVCMVDLF-GRAGL--LNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 329 ~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
..|++..+ +.| +...+..+..++ .+.|+ .++|.+++++.+...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998874 345 577888888864 67777 5999999999998888 5788999999999999999999999999
Q ss_pred HhcCCCCcchH
Q 046803 404 LSVEPENPGHY 414 (580)
Q Consensus 404 ~~~~p~~~~~~ 414 (580)
++..|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99998766544
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=5.5e-06 Score=77.57 Aligned_cols=181 Identities=15% Similarity=0.076 Sum_probs=130.8
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc---HHHhhHHhhHhhhcCCHHHHHHHHHhccC--CC-h---HHH
Q 046803 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN---VVLATSLINMYARCGNVSKAREIFDMMSE--LN-V---IAW 276 (580)
Q Consensus 206 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~ 276 (580)
....+......+...|+++.|...+..+.+.. +.+ ...+..+..+|.+.|++++|...|+++.+ |+ . .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45677888888999999999999999998764 222 24677889999999999999999999874 32 1 245
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 046803 277 TAMISGYGMH--------GYGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347 (580)
Q Consensus 277 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 347 (580)
..+..++.+. |+.++|.+.|+++... .|+.. ....+... .. .. ... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~------~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LR------NRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HH------HHH-H--------HHH
Confidence 5666666654 7889999999999874 45543 22111111 00 00 000 0 112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 046803 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 348 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 408 (580)
..+...|.+.|++++|...+++.+...|+ ...+..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24667789999999999999887755443 56788999999999999999999888876555
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=9.3e-06 Score=73.01 Aligned_cols=156 Identities=10% Similarity=0.078 Sum_probs=110.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH
Q 046803 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356 (580)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 356 (580)
..+-..+...|+.+....+..+.... ..-|.......+....+.|++.+|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44555666677777777666664432 122333444566677777888888888777763 445567778888888888
Q ss_pred cCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 046803 357 AGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 357 ~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 435 (580)
.|++++|..-|.+.+...|+ +...+.|.-.+.-.|+.+.|..++.......+.++.+-..|+.+....|++++|..+-.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888777777777763 66777777777788888888888888777777777777778888888888887776543
No 114
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.56 E-value=3.5e-05 Score=78.24 Aligned_cols=101 Identities=20% Similarity=0.210 Sum_probs=43.9
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHH
Q 046803 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264 (580)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 264 (580)
...|.+|+.+++.+.... .-.--|..+.+.|+..|+++.|+++|.+. ..++-.|++|.+.|+|++|.++
T Consensus 745 akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHH
Confidence 334444444444443321 12223444445555555555555544322 1233344555555555555555
Q ss_pred HHhccCCC--hHHHHHHHHHHHhcCChHHHHHHH
Q 046803 265 FDMMSELN--VIAWTAMISGYGMHGYGTEAVELF 296 (580)
Q Consensus 265 ~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 296 (580)
-.+...|. ...|-+-..-+-.+|++.+|.++|
T Consensus 814 a~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 44443322 233333334444455555555444
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=1.8e-05 Score=85.88 Aligned_cols=233 Identities=12% Similarity=0.164 Sum_probs=163.1
Q ss_pred CCCh-hHHHHHHHHHHhCCChHHHHHHHHHHHHc-CC---CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-CC-hHHH
Q 046803 204 NPDS-TTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GL---DVNVVLATSLINMYARCGNVSKAREIFDMMSE-LN-VIAW 276 (580)
Q Consensus 204 ~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~-~~~~ 276 (580)
.||. ..|..-|....+.++.++|+++.+++++. ++ ..-..+|.+++++-..-|.-+...++|+++.+ -| ...|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 3443 46677777777888888888888887754 21 11245677777777777777888888888776 23 4567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH
Q 046803 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356 (580)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 356 (580)
..|...|.+.+..++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++.++.+...-.--+....-.+.+-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 78888888888889999999988874 33455678888888888888888888888887532111124455556677778
Q ss_pred cCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC--CCCcchHH-HHHHHHHhcCChhHHHH
Q 046803 357 AGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE--PENPGHYV-MLSNIYALAGRMDRVEV 432 (580)
Q Consensus 357 ~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~-~l~~~y~~~g~~~~a~~ 432 (580)
.|+.+.+..+|+..+...|. ...|+..+..-.++|+.+.+..+|++++.+. |.....++ ..+..=-..|+-..++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 89999999999777766674 7789999999999999999999999988766 43333333 33333334466555555
Q ss_pred HHHHH
Q 046803 433 VRNIM 437 (580)
Q Consensus 433 ~~~~m 437 (580)
+-.+.
T Consensus 1693 VKarA 1697 (1710)
T KOG1070|consen 1693 VKARA 1697 (1710)
T ss_pred HHHHH
Confidence 44443
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=8.8e-06 Score=73.98 Aligned_cols=306 Identities=16% Similarity=0.116 Sum_probs=174.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHHH-HHHHHH
Q 046803 107 YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--KSVVAWNS-MISGYE 183 (580)
Q Consensus 107 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~ 183 (580)
.-+.+++..+.+..+++.+.+++..-.+.. +.+....+.|..+|....++..|-..++++.+ |...-|.. -...+-
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 335555655666666777777666555443 22455566666777777777777777777654 22222211 233455
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH--HhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHH
Q 046803 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC--AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261 (580)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 261 (580)
+.+.+..|+++...|.+. |+...-..-+.+. .+.+++..++.+.++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 667778888887777542 2222222222222 34566667777766654322 344445555556778888888
Q ss_pred HHHHHhccC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 262 REIFDMMSE----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 262 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
.+-|+...+ .....||.-+. ..+.|++..|+++..++++.|++-... ++ .|...++..+ +..
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDv-rsv--- 229 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDV-RSV--- 229 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCch-hcc---
Confidence 888877665 34456665443 345677888888888888777652111 00 0100000000 000
Q ss_pred cCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHhHcC---CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 338 YGLLPGV-------EHHVCMVDLFGRAGLLNEAYKFVKDVIG---EKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 338 ~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
| .|-. ..+|.-.-.+.+.|+++.|.+.+.++-| .+.|++|...+.-. -..+++.++.+-+.-+++++
T Consensus 230 -g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 230 -G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred -c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 0 0111 1222223345677888888887744432 22456665544322 23456777777777788888
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 408 PENPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 408 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
|-.+.++..+.-.|++..-++-|..++-+
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 87778888888888888888888777653
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.1e-07 Score=57.80 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=25.4
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 046803 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168 (580)
Q Consensus 136 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 168 (580)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777888888888877777764
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.3e-07 Score=57.49 Aligned_cols=33 Identities=39% Similarity=0.641 Sum_probs=24.5
Q ss_pred CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 237 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=2.1e-05 Score=80.19 Aligned_cols=217 Identities=14% Similarity=0.137 Sum_probs=170.5
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 046803 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216 (580)
Q Consensus 137 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 216 (580)
++|-...-..+...+.++|-..+|..+|+++ ..|...|.+|...|+..+|..+..+-.+ -+||+..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3455556677888999999999999999986 5788889999999999999999888877 37899999988888
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCC---ChHHHHHHHHHHHhcCChHHHH
Q 046803 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL---NVIAWTAMISGYGMHGYGTEAV 293 (580)
Q Consensus 217 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 293 (580)
..+..-+++|.++.++.... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 87777788888887766533 1222222334478999999999876543 3568888888888999999999
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 294 ELFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 294 ~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+..+ ++ .-+...|...+......|.+++|.+.+.+..
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 99988877 56765 5799999999999999999999998875 34 3445566667777788999999999996655
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=4.8e-05 Score=74.38 Aligned_cols=119 Identities=17% Similarity=0.158 Sum_probs=87.0
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHH
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a 396 (580)
+...|..++|+..++.+.+ ..+-|+.......+.+.+.|+.++|.+.+++++...|+ ...+-.+..++.+.|++++|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 4456777777777777765 33335666666777777888888888888777777776 56677777777888888888
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 397 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
+.++...+..+|+|+..|..|+.+|...|+..++...+.+..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 888888777778888888888877777777777777666553
No 121
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.00028 Score=74.44 Aligned_cols=335 Identities=13% Similarity=0.139 Sum_probs=200.7
Q ss_pred hHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHH----------HHHHHHHHHhCC-----
Q 046803 73 LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG----------RAVHCHVFVSGY----- 137 (580)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a----------~~~~~~~~~~g~----- 137 (580)
.-+-|..-.-+.++..--+-.++.....|.+ |..|++.+...|..+++-.+- +.+=....++++
T Consensus 840 ~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~v 918 (1666)
T KOG0985|consen 840 PVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACV 918 (1666)
T ss_pred ChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEE
Confidence 3444555556666666667777777777766 788888888877765543221 111111111110
Q ss_pred -----CCc---------hHHHHHHHHHHHhCCCHHHHHHHHccC----------------CC-CChhHHHHHHHHHHhCC
Q 046803 138 -----DSD---------LHVQAALVNFYAKSNNVDVARKVFDRM----------------PD-KSVVAWNSMISGYEQNG 186 (580)
Q Consensus 138 -----~~~---------~~~~~~li~~y~~~g~~~~A~~~f~~~----------------~~-~~~~~~~~li~~~~~~g 186 (580)
.-| ...+..+..-..+..+.+-=.+++.+- ++ .|+..-..-+.++...+
T Consensus 919 aYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtad 998 (1666)
T KOG0985|consen 919 AYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTAD 998 (1666)
T ss_pred eecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcC
Confidence 001 122333333344444444444443221 11 34555566678888888
Q ss_pred ChhHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-----------------------CCCc
Q 046803 187 FAKEAIGLFNLMRDFGVNP--DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG-----------------------LDVN 241 (580)
Q Consensus 187 ~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~ 241 (580)
-+.+-++++++..-.+-.- +...-+.++-. +-..+.....++.+++-..+ +..+
T Consensus 999 Lp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n 1077 (1666)
T KOG0985|consen 999 LPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMN 1077 (1666)
T ss_pred CcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhccc
Confidence 8888888888876321110 11111111111 11112222222222222111 1122
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 321 (580)
....+.|+. ..+.++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+. -|...|..++.++.+.
T Consensus 1078 ~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~ 1146 (1666)
T KOG0985|consen 1078 VSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRT 1146 (1666)
T ss_pred HHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhc
Confidence 222222222 22344444444444333 457999999999999999999888653 2667899999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 046803 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401 (580)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 401 (580)
|.+++-.+++....++ .-.|.+.+ .|+-+|++.+++.+-++++ ..||..-......-|...|.++.|.-+|.
T Consensus 1147 ~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~fi-----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1147 GKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEFI-----AGPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred CcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHHh-----cCCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 9999999998887664 56666554 5899999999999999888 46887778888999999999999988887
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 402 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
.. +.|..|+..+...|.+..|...-++
T Consensus 1219 ~v--------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1219 NV--------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred Hh--------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 43 4566777777777777666554433
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.48 E-value=5.6e-05 Score=79.56 Aligned_cols=346 Identities=13% Similarity=0.038 Sum_probs=173.3
Q ss_pred ccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHcc
Q 046803 87 STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR 166 (580)
Q Consensus 87 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 166 (580)
...|+..|-+..+..+. =...|..+-..|...-+...|.+-|..+.+.+ +.|...+.++.+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 44555555444432111 11235555555555555556666666665544 33455566666666666666666666433
Q ss_pred CCCCCh-----hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc
Q 046803 167 MPDKSV-----VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241 (580)
Q Consensus 167 ~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 241 (580)
..+.+. ..|.-..-.|...++..+|+.-|+...+.. +-|...|..+..+|...|.+..|.++|..+.... |.+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHh
Confidence 332211 122223333445555555555555555431 1233455555555555555555555555554433 222
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---------C-ChHHHHHHHHHHHhcCChHHHHHHHHHHH-------hCC-
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---------L-NVIAWTAMISGYGMHGYGTEAVELFHRMR-------AHG- 303 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~g- 303 (580)
...---..-+-+..|++.+|...+..+.. . -..++-.+...+...|-..+|...+++-+ ...
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 22222222333445555555555444331 0 01122222222222222222222222211 111
Q ss_pred -------------------CCCCHHHHHHHHHHHH----hcCCH---H---HHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 046803 304 -------------------VRPNNVTFVAVLSACA----HAGLV---Q---EGHRVFASMRQEYGLLPGVEHHVCMVDLF 354 (580)
Q Consensus 304 -------------------~~pd~~t~~~ll~a~~----~~g~~---~---~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 354 (580)
+.||. .-..++..+. ..+.. + -|.+.+-.-. .+..+...|..|+.-|
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~-vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSI-VNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccc-hHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhccchHHHHhHHH
Confidence 11331 1111111111 11211 1 1112221111 1112233444454444
Q ss_pred HH--------cCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046803 355 GR--------AGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425 (580)
Q Consensus 355 ~~--------~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 425 (580)
.+ ..+...|...+.+.+.... +...|+.|.-. ...|++.-|.-.|-+....+|.+...|..++..+....
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 43 1233467888877776665 46778877666 77789999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 046803 426 RMDRVEVVRNIMIQKG 441 (580)
Q Consensus 426 ~~~~a~~~~~~m~~~~ 441 (580)
+++.|...|.+.....
T Consensus 865 d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLD 880 (1238)
T ss_pred cHHHhhHHHHhhhhcC
Confidence 9999999999887644
No 123
>PLN02789 farnesyltranstransferase
Probab=98.48 E-value=0.00011 Score=71.32 Aligned_cols=228 Identities=14% Similarity=0.073 Sum_probs=141.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh
Q 046803 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST-TCVCVLAACAQLG-DIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252 (580)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 252 (580)
+..+-..+...++.++|+.++.++++. .|+.. .|..--.++...+ .++++...++.+.+.. +.+..+|+.-..++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 333344455667778888888877763 44443 4444444555556 5677888887777765 45555666555555
Q ss_pred hhcCCH--HHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC-
Q 046803 253 ARCGNV--SKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA---GL- 323 (580)
Q Consensus 253 ~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~---g~- 323 (580)
.+.|+. +++..+++.+.+ .|..+|+...-.+...|+++++++.+.++++.+.. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 555542 566777766654 56678888888888888888888888888876544 444555544444443 22
Q ss_pred ---HHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcC---
Q 046803 324 ---VQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRA----GLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHK--- 391 (580)
Q Consensus 324 ---~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g--- 391 (580)
.++...+...++. ..| +...|+.+..+|... ++..+|.+++.+.+...| +......|+..|....
T Consensus 196 ~~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~ 272 (320)
T PLN02789 196 EAMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPT 272 (320)
T ss_pred cccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccc
Confidence 2455666655553 234 466777677777662 345668888877666666 4666777777776532
Q ss_pred ---------------CchHHHHHHHHHHhcCCC
Q 046803 392 ---------------NFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 392 ---------------~~~~a~~~~~~~~~~~p~ 409 (580)
..++|..+++.+.+.+|-
T Consensus 273 ~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 273 AEFRDTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhhhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 235566666666545554
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=1.5e-05 Score=71.78 Aligned_cols=136 Identities=15% Similarity=0.131 Sum_probs=114.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHH
Q 046803 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTA 382 (580)
Q Consensus 304 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 382 (580)
..|+......+-.++...|+-+....+...... .-..+......++....+.|++.+|...+++.....| |...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 345443335666678888888888888777543 3334566666799999999999999999999887776 6999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 383 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+..+|.+.|+++.|...|.+++++.|.++..++.|+-.|.-.|+.+.|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999887644
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.43 E-value=3.4e-06 Score=71.25 Aligned_cols=101 Identities=16% Similarity=0.317 Sum_probs=81.2
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 340 LLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 340 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
..| +......+...+...|++++|.+.+++.....| +...|..+...+...|++++|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 344 345566677778888888888888877766666 477788888888888888888888888888888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 046803 418 SNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 418 ~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888887764
No 126
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.41 E-value=0.0001 Score=74.99 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=92.2
Q ss_pred hhhcCCHHHHHHHHHhccCCChH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046803 252 YARCGNVSKAREIFDMMSELNVI--AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329 (580)
Q Consensus 252 y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 329 (580)
-.....|.+|..+++.+...++. -|..+...|+..|+++.|.++|.+.- .|.-.|..|.+.|+|+.|.+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 33445555666666555543332 24455556666666666666665432 13334555666666666665
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
+-.+. +|-......|-+-..-+-..|++.+|.++| -.++ .|+. -+..|-++|..+..+++.++-. |+
T Consensus 813 la~e~---~~~e~t~~~yiakaedldehgkf~eaeqly-iti~-~p~~-----aiqmydk~~~~ddmirlv~k~h---~d 879 (1636)
T KOG3616|consen 813 LAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLY-ITIG-EPDK-----AIQMYDKHGLDDDMIRLVEKHH---GD 879 (1636)
T ss_pred HHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhhee-EEcc-CchH-----HHHHHHhhCcchHHHHHHHHhC---hh
Confidence 54433 243344555555555556666666666666 3332 2332 2455666666666665555432 22
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 410 -NPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 410 -~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
-..+...++.-|...|+...|..-|-+.
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 1245667788888889998888877654
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00036 Score=62.98 Aligned_cols=248 Identities=12% Similarity=0.072 Sum_probs=152.1
Q ss_pred hCCCHHHHHHHHccCCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHH-HHHH
Q 046803 153 KSNNVDVARKVFDRMPD--KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL-GRWV 229 (580)
Q Consensus 153 ~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~-a~~~ 229 (580)
-.|.+..++..-..... .++..-.-+-++|...|.+...+.- ... |-.|....+..+.......++.+. -.++
T Consensus 20 Y~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 34556555554433322 2333333455666666765543322 211 223344444444444444444333 3344
Q ss_pred HHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 046803 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309 (580)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 309 (580)
.+.+.......+......-...|...|++++|.+.......-+....+ ...+.+..+.+-|.+.+++|.+- -+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 455555444444444444556788889999999988874433333333 34456677788899999999873 2566
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHH
Q 046803 310 TFVAVLSACAH----AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAML 384 (580)
Q Consensus 310 t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll 384 (580)
|.+-|.+++.+ .+.+.+|.-+|++|.. ...|+..+.+.+..+....|++++|..++++++...+ ++.+...++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 77767766654 4568888888988875 3567877888888888888899999998888886666 577776666
Q ss_pred HHHHhcCCc-hHHHHHHHHHHhcCCCCc
Q 046803 385 GACKMHKNF-DLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 385 ~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 411 (580)
..-...|.. +...+...++....|..+
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 666666654 445566777777777654
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=5.1e-05 Score=81.02 Aligned_cols=143 Identities=8% Similarity=0.021 Sum_probs=116.2
Q ss_pred CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHH
Q 046803 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT-FVA 313 (580)
Q Consensus 238 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ 313 (580)
.+.++..+-.|.......|.+++|+.+++...+ | +...+..++..+.+.+++++|+..+++... ..|+..+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 466788899999999999999999999998875 4 456788889999999999999999999998 4666654 455
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC-CCHHHHHHHH
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK-PAPAVWTAML 384 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ll 384 (580)
+..++.+.|+.++|..+|+++.. ..+-+...+..+..++-..|+.++|...|++++... |....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 56688899999999999999985 222347888889999999999999999998887443 4455555444
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.36 E-value=0.00031 Score=75.89 Aligned_cols=234 Identities=9% Similarity=0.049 Sum_probs=139.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCC
Q 046803 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187 (580)
Q Consensus 108 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 187 (580)
.+..|+..+...+++++|.++.+..++.. +.....|-.+...|...++.+++..+ .++.......+
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~ 98 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLK 98 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccc
Confidence 45556666666666666666666554442 22222333333355555554444333 23444444445
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHh
Q 046803 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267 (580)
Q Consensus 188 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 267 (580)
+.-+..+...|... .-+...+..+..+|.+.|+.+++.++++++++.. +.|+.+.|.+...|+.. ++++|.+++.+
T Consensus 99 ~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 99 WAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred hhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 54344444445442 2344577778888888888888888888888887 77888888888888888 88888888776
Q ss_pred ccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHH
Q 046803 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT-FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346 (580)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 346 (580)
.. ..|...+++.++.++|.++... .|+... |..++. .+....+..--+.+
T Consensus 175 AV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~~~~~~ 225 (906)
T PRK14720 175 AI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFTRLVGL 225 (906)
T ss_pred HH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccchhHHH
Confidence 52 3366677888888888888874 344332 222222 22221122222334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHH
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACK 388 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~ 388 (580)
+-.+..-|-..++++++.++++..+...| |.....-++..|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 44455666667777777777766666666 3444555555554
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.36 E-value=0.00011 Score=79.27 Aligned_cols=150 Identities=9% Similarity=0.072 Sum_probs=90.5
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 318 (580)
..++..|..+|-+.|+.++|..+++++.+ .|+.+.|.+...|+.. +.++|++++.+.... +
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 34555566666666666666666666553 3455556666666655 666666666555432 3
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 398 (580)
...+++..+.+++.++.. ...-+...+-.+..... ..++..--..++-.+-..|...+++++++.
T Consensus 180 i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~-------------~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVL-------------GHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHH-------------hhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 444455556666665542 11112222211111111 112222334556667778899999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHH
Q 046803 399 VAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
+++.+++.+|.|..+...++..|.
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHH
Confidence 999999999999999999998887
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.33 E-value=2.3e-05 Score=77.30 Aligned_cols=125 Identities=15% Similarity=0.228 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGAC 387 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~ 387 (580)
.....|+..+...++++.|..+|+++.+. .|+. ...++..+...++-.+|.+++++.+...| +...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556777778889999999999999754 3654 44578888888999999999999987777 577777778889
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
...++++.|+.+.+++.+..|++..+|..|+.+|...|++++|...++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999998774
No 132
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=8.3e-05 Score=76.63 Aligned_cols=259 Identities=15% Similarity=0.127 Sum_probs=177.5
Q ss_pred CchHHHHHHHH--HHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCCh
Q 046803 139 SDLHVQAALVN--FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-G--------VNPDS 207 (580)
Q Consensus 139 ~~~~~~~~li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~ 207 (580)
-|..+-.++++ .|...|++|.|.+-.+-+. +...|..|.+.+.+..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 35666666664 4777899999888877664 4578899999988888877776555555321 1 1222
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC-hHHHHHHHHHHHhc
Q 046803 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN-VIAWTAMISGYGMH 286 (580)
Q Consensus 208 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~ 286 (580)
.+=.-+.-....+|.+++|+.+|.+..+.+ .|=..|-..|.+++|.++-+.-.... -.||.....-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222223333457889999999999887654 45566788899999988866433211 24666667777778
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 046803 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366 (580)
Q Consensus 287 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 366 (580)
++.+.|++.|++... |-...+..|. .++....++.+++. |...|.-...-+-..|..+.|+.+
T Consensus 872 ~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~-------d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKR-------DESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred ccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhcc-------chHHHHHHHHHHhcccchHHHHHH
Confidence 889999999886432 1222222222 23444444444442 345566666777789999999999
Q ss_pred HHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 367 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
|.. ..-|-+++...+-+|+.++|-++.++- .|..+...|+..|...|++.+|...|.+..
T Consensus 935 Y~~-------A~D~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 935 YSS-------AKDYFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHH-------hhhhhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 932 345778888888999999998887754 356778899999999999999999988764
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00031 Score=62.86 Aligned_cols=167 Identities=13% Similarity=0.123 Sum_probs=115.5
Q ss_pred hHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHH---HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 046803 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAM---ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322 (580)
Q Consensus 246 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 322 (580)
.-++-+...+|+.+.|...++.+...-+.++... ..-+-..|++++|+++|+.+.+.. +.|.+++.-=+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3344444556666666666665543111111111 112345688899999999888765 445667766666666778
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcC---CchHHHH
Q 046803 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHK---NFDLGVE 398 (580)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g---~~~~a~~ 398 (580)
..-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.+++.+=..| ++..+..+...+...| +.+.+.+
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 87788888888776 4567888999999999999999999999988887777 4666666666654443 7788999
Q ss_pred HHHHHHhcCCCCcchHH
Q 046803 399 VAEHLLSVEPENPGHYV 415 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~~ 415 (580)
.|++++++.|.+...+.
T Consensus 213 yy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHhChHhHHHHH
Confidence 99999999986544433
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=1.6e-06 Score=53.61 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCCh
Q 046803 72 FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSN 106 (580)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 106 (580)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=4.6e-05 Score=64.27 Aligned_cols=114 Identities=10% Similarity=0.038 Sum_probs=89.5
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC
Q 046803 295 LFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373 (580)
Q Consensus 295 ~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 373 (580)
.|++... ..|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...+.+.|++++|...+++.+..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 34443 44556667788889999999999888752 2336778888889999999999999999888777
Q ss_pred CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 374 KPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 374 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
.|+ ...+..+...+...|++++|...++++++..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 774 777888888999999999999999999999988654
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.0009 Score=65.74 Aligned_cols=133 Identities=17% Similarity=0.079 Sum_probs=76.0
Q ss_pred hCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhCCChHHHHH
Q 046803 153 KSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD-STTCVCVLAACAQLGDIDLGRW 228 (580)
Q Consensus 153 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~ 228 (580)
..|++++|+..++.+.. | |+..+......+.+.|+..+|.+.++++... .|+ ......+..++.+.|++.+|..
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34455555555554432 2 3444445555666666666666666666553 444 3344455556666666666666
Q ss_pred HHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046803 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302 (580)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 302 (580)
++....... +.|+..|..|..+|...|+..+|.... ..+|...|++++|+..+....+.
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 666655553 556666666666666666666665543 23456667777777666666553
No 137
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.20 E-value=0.0087 Score=59.62 Aligned_cols=396 Identities=10% Similarity=0.110 Sum_probs=222.9
Q ss_pred CChhhhchHHHHHhccCChhHHHHHHccCCC--C-ChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046803 38 RSRSMLTKLLSLVCDAGFITYAQRIFFCIPS--P-DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114 (580)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 114 (580)
-|+..|+.||+-+-.. .+++++..++++.. | ....|..-|..-....+++....+|.+-+..-+ +...|..-|.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHHH
Confidence 3778899999544333 88888888888764 3 455788889988888999999999988776433 4444554444
Q ss_pred HHH-ccCChHHH----HHHHHHHH-HhCCCCc-hHHHHHHHHHH---------HhCCCHHHHHHHHccCCCC---Ch-hH
Q 046803 115 SCA-HLSILNLG----RAVHCHVF-VSGYDSD-LHVQAALVNFY---------AKSNNVDVARKVFDRMPDK---SV-VA 174 (580)
Q Consensus 115 a~~-~~~~~~~a----~~~~~~~~-~~g~~~~-~~~~~~li~~y---------~~~g~~~~A~~~f~~~~~~---~~-~~ 174 (580)
--. ..++.... .+.|+.++ +.|+.+- -..|+..++.. ....+++..+++++++... |. ..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 322 22333332 23344333 3454332 34566666543 3445677788888877642 22 12
Q ss_pred HHH------HHHHHH-------hCCChhHHHHHHHHHHH--CCCCCChhH---------------HHHHHHHHHhCCChH
Q 046803 175 WNS------MISGYE-------QNGFAKEAIGLFNLMRD--FGVNPDSTT---------------CVCVLAACAQLGDID 224 (580)
Q Consensus 175 ~~~------li~~~~-------~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll~a~~~~~~~~ 224 (580)
|+- =|+-.. +...+..|.+++++... .|..-+..+ |..+|.. .+.+-+.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL~ 253 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCcc
Confidence 322 222111 12335566666666643 344433322 2222222 1111111
Q ss_pred ---------HHHHHHHHHHH-cCCCCcHHHhh-----HHhhHhhhcCCHH-------HHHHHHHhccC----CChHHHHH
Q 046803 225 ---------LGRWVHEFIVG-QGLDVNVVLAT-----SLINMYARCGNVS-------KAREIFDMMSE----LNVIAWTA 278 (580)
Q Consensus 225 ---------~a~~~~~~~~~-~~~~~~~~~~~-----~li~~y~~~g~~~-------~A~~~~~~~~~----~~~~~~~~ 278 (580)
...-+|++.+. .+..|++.... ..-+.+...|+.. ++..++++..+ .+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222221 23333332211 1123344444433 33333333322 12222222
Q ss_pred HHHHHHhc---CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHH
Q 046803 279 MISGYGMH---GYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDL 353 (580)
Q Consensus 279 li~~~~~~---g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 353 (580)
+..---.. ...+.....++++... ...| ..+|..+++.-.+..-++.|+.+|.++.++ +..+ .+.++++++.-
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEY 411 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHH
Confidence 22111111 1245556666666652 2333 346777788777888888899999988765 4445 67778888876
Q ss_pred HHHcCCHHHHHHHHHhHcCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhc--CCC-CcchHHHHHHHHHhcCChhH
Q 046803 354 FGRAGLLNEAYKFVKDVIGEKPAP-AVWTAMLGACKMHKNFDLGVEVAEHLLSV--EPE-NPGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~y~~~g~~~~ 429 (580)
|+ .++.+-|..+|+-.+..-+|. .--...+.-+...++-.-+..+|++++.. .|+ ....|..++..=+.-|+...
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 65 678888888887667555653 33456666777788888888999988865 222 23678888888888888888
Q ss_pred HHHHHHHHHhC
Q 046803 430 VEVVRNIMIQK 440 (580)
Q Consensus 430 a~~~~~~m~~~ 440 (580)
+.++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 88887777654
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=2.9e-06 Score=52.34 Aligned_cols=35 Identities=37% Similarity=0.674 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 207 (580)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.16 E-value=8.8e-05 Score=63.36 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=73.6
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCH----HHHHHHHHHHHhcCCch
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP----AVWTAMLGACKMHKNFD 394 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~ll~~~~~~g~~~ 394 (580)
..++...+...++.+.+.++-.| .....-.+...+...|++++|...|+..+...||. .....|...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 36667777777777766533222 12333445566777777777777776666544543 23445666777777777
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 395 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
+|+..++.. .-.+..+..+..++++|.+.|++++|...|+..
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777553 222334556667788888888888888877653
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.16 E-value=2.7e-05 Score=60.55 Aligned_cols=94 Identities=16% Similarity=0.269 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 425 (580)
+..+...+...|++++|.+.+++.+...|+ ...+..+...+...+++++|...+++..+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445677778889999999999777776664 4677788888888899999999999999888888888888999999999
Q ss_pred ChhHHHHHHHHHHhC
Q 046803 426 RMDRVEVVRNIMIQK 440 (580)
Q Consensus 426 ~~~~a~~~~~~m~~~ 440 (580)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988877653
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.15 E-value=0.017 Score=61.06 Aligned_cols=379 Identities=11% Similarity=0.089 Sum_probs=179.9
Q ss_pred hccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHH
Q 046803 51 CDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127 (580)
Q Consensus 51 ~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 127 (580)
.++|+.++|..+++.... .|..|...+-..|...++.++|..+|++... .-|+..-...+..++.+.+++.+-.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777776665432 3566677777777777777777777777664 34556666666677777666665444
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCC----------CHHHHHHHHccCCCCC-----hhHHHHHHHHHHhCCChhHHH
Q 046803 128 VHCHVFVSGYDSDLHVQAALVNFYAKSN----------NVDVARKVFDRMPDKS-----VVAWNSMISGYEQNGFAKEAI 192 (580)
Q Consensus 128 ~~~~~~~~g~~~~~~~~~~li~~y~~~g----------~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~ 192 (580)
+--++-+. ++.++..+=+.++.+...- -+.-|.+.++.+.+.+ ..-...-....-..|.+++|+
T Consensus 132 aa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 132 AALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEAL 210 (932)
T ss_pred HHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHH
Confidence 43333332 3334443333444443321 1223444444444332 111111122234466677777
Q ss_pred HHHHH-HHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh----------------c
Q 046803 193 GLFNL-MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR----------------C 255 (580)
Q Consensus 193 ~~~~~-m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----------------~ 255 (580)
+++.. .-+.-...+...-+--+..+...+++.+..++-.++...|. .| |...++.+.+ .
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~-Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~ 286 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN-DD---YKIYTDSVFKLLELLNKEPAEAAHSLS 286 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC-cc---hHHHHHHHHHHHHhcccccchhhhhhh
Confidence 77632 22222222333444556666667777777777777776652 22 3322222211 1
Q ss_pred CCHHHHHHHHHhccCC-ChHHHHHHHHHH---HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046803 256 GNVSKAREIFDMMSEL-NVIAWTAMISGY---GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331 (580)
Q Consensus 256 g~~~~A~~~~~~~~~~-~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 331 (580)
+.++...+...+.... .-..|-+-+.++ -.-|+.++++..|-+-. |-+|- +..=+..|...=..++-..+.
T Consensus 287 ~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~kpc---c~~Dl~~yl~~l~~~q~~~l~ 361 (932)
T KOG2053|consen 287 KSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF--GDKPC---CAIDLNHYLGHLNIDQLKSLM 361 (932)
T ss_pred hhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh--CCCcH---hHhhHHHhhccCCHHHHHHHH
Confidence 2222222222221110 111222222222 23466666554443211 22221 111111111111111112222
Q ss_pred HHhHHhcCCCCCHH-------HHHHHHHHHHHcCCH-----HHHHHHHHh-------HcC----CCCC---------HHH
Q 046803 332 ASMRQEYGLLPGVE-------HHVCMVDLFGRAGLL-----NEAYKFVKD-------VIG----EKPA---------PAV 379 (580)
Q Consensus 332 ~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~-----~~A~~~~~~-------~~~----~~p~---------~~~ 379 (580)
.... +..++.. -+.+.+....-.|.+ +.-..++++ .+. .-|. .-+
T Consensus 362 ~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLa 438 (932)
T KOG2053|consen 362 SKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLA 438 (932)
T ss_pred HHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHH
Confidence 2211 1111110 011222222222211 111222211 111 1121 123
Q ss_pred HHHHHHHHHhcCCch---HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 046803 380 WTAMLGACKMHKNFD---LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 444 (580)
-+.|+..|.+.++.. +|+-+++..+...|.|+..-..|+.+|.-.|-...|.++++.+.-++|+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 557778888877654 66777777788888888888888999998899999999988887666654
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.12 E-value=4.3e-05 Score=75.79 Aligned_cols=98 Identities=11% Similarity=0.030 Sum_probs=51.1
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~ 395 (580)
.+...|++++|...|+++.+. -+.+...|..+..+|.+.|++++|+..+++++...|+ ...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344455555555555555431 1123444555555555555555555555555555552 4445555555555555555
Q ss_pred HHHHHHHHHhcCCCCcchHHH
Q 046803 396 GVEVAEHLLSVEPENPGHYVM 416 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~~~~~~ 416 (580)
|+..|+++++++|+++.....
T Consensus 89 A~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 555555555555555444433
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=4.5e-06 Score=51.12 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCC
Q 046803 71 SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP 104 (580)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 104 (580)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999888887
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00044 Score=61.97 Aligned_cols=184 Identities=12% Similarity=0.120 Sum_probs=135.0
Q ss_pred cCCHHHHHHHHHhccC--------CChH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCH
Q 046803 255 CGNVSKAREIFDMMSE--------LNVI-AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS-ACAHAGLV 324 (580)
Q Consensus 255 ~g~~~~A~~~~~~~~~--------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~-a~~~~g~~ 324 (580)
..+.++..+++..+.. ++.. .|..++-+....|+.+.|...++++...- |.+.-...+=. -+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4678888888887753 2332 34444556667788899999999988753 55433222221 24457889
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK-PAPAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 325 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
++|.++++.+.++ -+.|..++-.-+-+.-..|+--+|++-+.+.+..- .|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999998864 23456777766777777888888888776666433 47999999999999999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcC---ChhHHHHHHHHHHhCCC
Q 046803 404 LSVEPENPGHYVMLSNIYALAG---RMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 404 ~~~~p~~~~~~~~l~~~y~~~g---~~~~a~~~~~~m~~~~~ 442 (580)
+=..|.++..+..+++.+.-.| +..-|.+++.+..+.+.
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999876555 56677788887776543
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.05 E-value=7e-05 Score=61.45 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC---cchHHHHHHHH
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN---PGHYVMLSNIY 421 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y 421 (580)
.++..+.+.|++++|.+.|++.+...|+ ...+..+..++...|+++.|...++++....|++ +.++..++.+|
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3444444555555555555444433332 2234444555555555555555555555544443 23444555555
Q ss_pred HhcCChhHHHHHHHHHHh
Q 046803 422 ALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~ 439 (580)
.+.|++++|.+.++.+.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 555555555555555544
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=0.00012 Score=59.93 Aligned_cols=105 Identities=11% Similarity=0.132 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHH
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAML 384 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll 384 (580)
++..+...+...|++++|.+.|..+.+.+.-.+ ....+..+..++.+.|++++|.+.+++.+...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445556666777788888888877765432111 1345556778888888888888888666654444 45677777
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
.++...|+.++|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 788888888888888888888888765443
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00014 Score=71.96 Aligned_cols=124 Identities=14% Similarity=0.068 Sum_probs=82.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCCh
Q 046803 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223 (580)
Q Consensus 144 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 223 (580)
-.+|+..+...++++.|..+|+++.+.+...+..++..+...++..+|++++.+..... +-|...+......|.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34455566666777777777777776666666667777777777777777777776542 23444555555566677777
Q ss_pred HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
+.|..+..++.+.. |.+..+|..|..+|.+.|+++.|...++.++
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777664 4455567777777777777777777776665
No 148
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.002 Score=58.27 Aligned_cols=243 Identities=12% Similarity=0.076 Sum_probs=150.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHH
Q 046803 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259 (580)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 259 (580)
+-+.-.|.+..++..-...... +-+...-.-+-++|...|...... ..+.... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhH
Confidence 3444567777776655444332 234445555666777776653221 1122111 222233332322222233333
Q ss_pred HHH-HHHHhccCC---ChHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 260 KAR-EIFDMMSEL---NVIAWTA-MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 260 ~A~-~~~~~~~~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
+-. ++.+.+..+ +..+|.. -...|...|++++|++..+... +......=.....+..+.+-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 223333322 2223332 3456888999999999988722 1222222233455677889999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHhHcC-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 335 RQEYGLLPGVEHHVCMVDLF----GRAGLLNEAYKFVKDVIG-EKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 335 ~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
.+ + .+..+.+.|..++ ...+.+.+|.-+|+++-+ ..|++.+.+-...++...|++++|..+++.++..+++
T Consensus 164 q~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 74 2 3344555454444 456789999999966665 6788999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChhHHHH-HHHHHH
Q 046803 410 NPGHYVMLSNIYALAGRMDRVEV-VRNIMI 438 (580)
Q Consensus 410 ~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~ 438 (580)
+|.+...++..-...|+-.++.. .+..++
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 99999999998888888766543 444443
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1.2e-05 Score=49.15 Aligned_cols=33 Identities=27% Similarity=0.578 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (580)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888999999999999999999998888877
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=5.4e-05 Score=69.57 Aligned_cols=91 Identities=14% Similarity=0.163 Sum_probs=65.1
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchH
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~ 395 (580)
..+.+++++|...|..++ .+.| |...|..-..+|.+.|.++.|++-.+.++.+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 556677777777777776 3444 4666666677777777777777777667777775 5667777777777777777
Q ss_pred HHHHHHHHHhcCCCCc
Q 046803 396 GVEVAEHLLSVEPENP 411 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~ 411 (580)
|++.|+++++++|+|.
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 7777777777777765
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.96 E-value=0.00011 Score=64.96 Aligned_cols=83 Identities=14% Similarity=0.068 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 419 (580)
...+..+...+.+.|++++|...|++++...|+ ...+..+...+...|++++|+..++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445666777777788888888888777654443 3567777888888888888888888888888888888888888
Q ss_pred HHHhcCC
Q 046803 420 IYALAGR 426 (580)
Q Consensus 420 ~y~~~g~ 426 (580)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8877666
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.95 E-value=7.9e-06 Score=62.40 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHhHcCCCC---CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 046803 357 AGLLNEAYKFVKDVIGEKP---APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVV 433 (580)
Q Consensus 357 ~g~~~~A~~~~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 433 (580)
.|++++|+.++++.+...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3566666666655554444 233455566666666777777666666 555555555566667777777777777776
Q ss_pred HHH
Q 046803 434 RNI 436 (580)
Q Consensus 434 ~~~ 436 (580)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00037 Score=66.65 Aligned_cols=265 Identities=10% Similarity=-0.010 Sum_probs=157.5
Q ss_pred HHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhCCChH
Q 046803 149 NFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD-STTCVCVLAACAQLGDID 224 (580)
Q Consensus 149 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~ 224 (580)
+.+.+..++.+|+..+....+ .+..-|..-...+...|++++|+--.++-.+ ++|. .......-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHHH
Confidence 445555666666666654433 2444555556666666666666665555443 2222 224444445555555555
Q ss_pred HHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-----CChHHHHHH-HHHHHhcCChHHHHHHHHH
Q 046803 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-----LNVIAWTAM-ISGYGMHGYGTEAVELFHR 298 (580)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 298 (580)
+|.+.++.-. .+ ....|...++.... |...+|-.+ ...+...|++++|.+.--.
T Consensus 135 ~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 5554444100 00 01111111111111 222333333 2345566777777766655
Q ss_pred HHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHhHHhcCCCCCHHH-------------HHHHHHHHHHcCCHHHH
Q 046803 299 MRAHGVRPNNVTFVAVLS--ACAHAGLVQEGHRVFASMRQEYGLLPGVEH-------------HVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 299 m~~~g~~pd~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~~~li~~~~~~g~~~~A 363 (580)
.++. .++. .+..++. ++...++.+.|...|++.. .+.|+-.. +..=.+-..+.|++.+|
T Consensus 195 ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 195 ILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 5542 1111 1112222 3344566777777777654 33443211 11123445688999999
Q ss_pred HHHHHhHcCCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 364 YKFVKDVIGEKPA-----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 364 ~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
.+.|.+++.+.|+ +..|.....+..+.|+.++|+.-.+++++++|.-...|..-++++...++|++|.+-+++..
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988775 33466667778899999999999999999999988999999999999999999999999887
Q ss_pred hCC
Q 046803 439 QKG 441 (580)
Q Consensus 439 ~~~ 441 (580)
+..
T Consensus 349 q~~ 351 (486)
T KOG0550|consen 349 QLE 351 (486)
T ss_pred hhc
Confidence 653
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.91 E-value=4.8e-05 Score=54.70 Aligned_cols=60 Identities=18% Similarity=0.345 Sum_probs=31.9
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
...+.+.|++++|.+.|++.+...|+ ...|..+..++...|++++|...|+++++..|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34455555555555555555555553 4455555555555555555555555555555554
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.91 E-value=0.00022 Score=70.80 Aligned_cols=103 Identities=12% Similarity=-0.021 Sum_probs=83.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc
Q 046803 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRA 357 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 357 (580)
....+...|++++|+..|++.++... -+...+..+..+|...|++++|...++.+.. +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 35567788999999999999998532 2456777888899999999999999999974 345 577888899999999
Q ss_pred CCHHHHHHHHHhHcCCCCCHHHHHHHHH
Q 046803 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLG 385 (580)
Q Consensus 358 g~~~~A~~~~~~~~~~~p~~~~~~~ll~ 385 (580)
|++++|+..|++++...|+......++.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999988886444444443
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0002 Score=66.29 Aligned_cols=102 Identities=10% Similarity=0.062 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC---CchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHK---NFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
-|...|-.|...|.+.|+++.|..-|.++....|+ +..+..+..++.... ...++..++++++..+|.|..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 37999999999999999999999999999988874 778888877765443 56789999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 418 SNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 418 ~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
+..+...|++.+|...|+.|.+....
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999987544
No 157
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.90 E-value=0.00014 Score=64.02 Aligned_cols=95 Identities=11% Similarity=-0.086 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 418 (580)
....|..++..+...|++++|+..|++++...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677778888899999999999888755443 357888999999999999999999999999999888888888
Q ss_pred HHHH-------hcCChhHHHHHHHHH
Q 046803 419 NIYA-------LAGRMDRVEVVRNIM 437 (580)
Q Consensus 419 ~~y~-------~~g~~~~a~~~~~~m 437 (580)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888776666554
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.89 E-value=0.00043 Score=61.07 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHH
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN--NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCM 350 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 350 (580)
..+..+...+...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+++..+. .| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence 3455555555556666666666665554322221 134444555555555555555555555431 22 23344444
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
..+|...|+...+..-+++++ ..+++|.+.++++++.+|++ |..+...+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~-------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE-------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH-------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 445555444444333331111 11577888888888888875 5555555554443
No 159
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.89 E-value=3.4e-05 Score=56.32 Aligned_cols=64 Identities=14% Similarity=0.243 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 046803 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG-RMDRVEVVRNIMIQ 439 (580)
Q Consensus 376 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 439 (580)
++.+|..+...+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888888 68888888887765
No 160
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.88 E-value=0.00086 Score=57.23 Aligned_cols=125 Identities=9% Similarity=0.062 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHH
Q 046803 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPN--NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG--VEHHVCMV 351 (580)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li 351 (580)
|..++..+ ..++...+...++.+......-. ......+...+...|++++|...|+.+... ...|. ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 33344444 36677777777777776421111 122333445666777777777777777653 22222 22333466
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEK-PAPAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
..+...|++++|+..+ +..+.. ..+..+......+...|+.++|...|+++
T Consensus 93 ~~~~~~~~~d~Al~~L-~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATL-QQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHH-HhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777778888888777 333222 23555666777777788888887777765
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.87 E-value=0.00076 Score=69.92 Aligned_cols=140 Identities=11% Similarity=-0.003 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHHhc--C---ChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHhHH
Q 046803 271 LNVIAWTAMISGYGMH--G---YGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHA--------GLVQEGHRVFASMRQ 336 (580)
Q Consensus 271 ~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~--------g~~~~a~~~~~~~~~ 336 (580)
.|..+|...+.+.... + ...+|..+|++..+ ..||.. .+..+..++... .++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 5677788777765432 2 26688888888887 466653 333332222211 112233333333221
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 337 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
......+...|..+.-.....|++++|...+++++...|+...|..+...+...|+.++|.+.+++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1112223455666655555667777777777777777777667777777777777777777777777777777654
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00018 Score=66.18 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=79.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHc
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRA 357 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 357 (580)
..-+.+.+++.+|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHcc
Confidence 3446788999999999999998 454 55666677889999999999998877776 45665 77899999999999
Q ss_pred CCHHHHHHHHHhHcCCCCCHHHHH
Q 046803 358 GLLNEAYKFVKDVIGEKPAPAVWT 381 (580)
Q Consensus 358 g~~~~A~~~~~~~~~~~p~~~~~~ 381 (580)
|++++|++.|++++.+.|+-.+|-
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYK 186 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHH
Confidence 999999999999999999765554
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.85 E-value=1.8e-05 Score=47.18 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHcCCCccHHHHHHHHHHHCCC
Q 046803 72 FLFNTLIIRNSKANFSTDSLLFYRRMIVSNI 102 (580)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 102 (580)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988764
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=97.84 E-value=0.00054 Score=57.88 Aligned_cols=90 Identities=12% Similarity=0.146 Sum_probs=78.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 428 (580)
...-+...|++++|..+|+-..-..| +..-|..|..+|...++++.|+..|..+..++++||.++...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 44445689999999999944334455 57778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 046803 429 RVEVVRNIMIQ 439 (580)
Q Consensus 429 ~a~~~~~~m~~ 439 (580)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998866
No 165
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.82 E-value=0.046 Score=54.69 Aligned_cols=427 Identities=11% Similarity=0.112 Sum_probs=260.0
Q ss_pred CHHHHHHHHhcCCC--CchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCC--CChhhHHHHHHHHH
Q 046803 7 HSPAYEAILKAGPR--LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS--PDSFLFNTLIIRNS 82 (580)
Q Consensus 7 ~~~~~~~ll~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~--~~~~~~~~li~~~~ 82 (580)
|..+|..|++-..+ .+..+....+++. -+...+..|...|.......+++...++|.+... -++..|..-|+.-.
T Consensus 19 di~sw~~lire~qt~~~~~~R~~YEq~~~-~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR 97 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQPIDKVRETYEQLVN-VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVR 97 (656)
T ss_pred cHHHHHHHHHHHccCCHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 77889999987643 3677888888764 2445677888888888888999999999997653 57888998887544
Q ss_pred c-CCCccHH----HHHHHHH-HHCCCCCChhh-HH---HHHHH------HHccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 046803 83 K-ANFSTDS----LLFYRRM-IVSNISPSNYT-FS---AVIKS------CAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146 (580)
Q Consensus 83 ~-~g~~~~A----~~~~~~m-~~~g~~p~~~t-~~---~ll~a------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 146 (580)
+ +|+...+ ...|+-. .+.|+.+-..+ |+ ..+.. +....+++..+++|.+++...+..=...|+-
T Consensus 98 ~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~D 177 (656)
T KOG1914|consen 98 ETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKD 177 (656)
T ss_pred HHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 3 3444332 3344443 34465544332 33 33332 2233456678888888887654332333332
Q ss_pred HH------HH-------HHhCCCHHHHHHHHccCCC------CC---------------hhHHHHHHHHHHhCCCh----
Q 046803 147 LV------NF-------YAKSNNVDVARKVFDRMPD------KS---------------VVAWNSMISGYEQNGFA---- 188 (580)
Q Consensus 147 li------~~-------y~~~g~~~~A~~~f~~~~~------~~---------------~~~~~~li~~~~~~g~~---- 188 (580)
.. +. --+...+..|+++++++.. ++ +..|-.+|.--..++.-
T Consensus 178 Y~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~ 257 (656)
T KOG1914|consen 178 YEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDG 257 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 11 11 1233456677777766531 11 12365566543333221
Q ss_pred ----hHHHHHHHHH-HHCCCCCChhHHH-----HHHHHHHhCCC-------hHHHHHHHHHHHHcCCCCcHHHhhHHhhH
Q 046803 189 ----KEAIGLFNLM-RDFGVNPDSTTCV-----CVLAACAQLGD-------IDLGRWVHEFIVGQGLDVNVVLATSLINM 251 (580)
Q Consensus 189 ----~~A~~~~~~m-~~~g~~p~~~t~~-----~ll~a~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 251 (580)
....-.+++. .-.+..|+..... ..-+.+...|+ .+++..+++..+..-...+..+|..+.+-
T Consensus 258 ~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~ 337 (656)
T KOG1914|consen 258 TMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADY 337 (656)
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111222222 2224444432111 11122333444 34556666666554334455555554432
Q ss_pred hhhcC---CHHHHHHHHHhccC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 046803 252 YARCG---NVSKAREIFDMMSE----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGL 323 (580)
Q Consensus 252 y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~ 323 (580)
--..- ..+.....+++... .-..+|-..++.-.+..-...|..+|.+..+.+..+ +.....+++.-++ .++
T Consensus 338 eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD 416 (656)
T KOG1914|consen 338 EESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKD 416 (656)
T ss_pred HHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCC
Confidence 11111 24444445554442 223467777777777778899999999999988888 6667777777555 578
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC--CCC--HHHHHHHHHHHHhcCCchHHHHH
Q 046803 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE--KPA--PAVWTAMLGACKMHKNFDLGVEV 399 (580)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~--~~~~~~ll~~~~~~g~~~~a~~~ 399 (580)
.+.|.++|+.-.+++|-. ...-...++.+...++-..|..+|++.++. .|+ ..+|..++.--..-|+...+.++
T Consensus 417 ~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 417 KETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred hhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999988766543 444567788899999999999999877754 444 57899999999999999999999
Q ss_pred HHHHHhcCCCC----cchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 400 AEHLLSVEPEN----PGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 400 ~~~~~~~~p~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 495 ekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 495 EKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 98887655522 123445666676666655555444444
No 166
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.81 E-value=0.00033 Score=54.17 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCc
Q 046803 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNF 393 (580)
Q Consensus 315 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~ 393 (580)
...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++.+...|. ..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33444445555555555544321 1112233444555555555555555555444444442 33455555555555666
Q ss_pred hHHHHHHHHHHhcCC
Q 046803 394 DLGVEVAEHLLSVEP 408 (580)
Q Consensus 394 ~~a~~~~~~~~~~~p 408 (580)
+.|...+.++.+..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666655555444
No 167
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.78 E-value=0.0027 Score=54.21 Aligned_cols=133 Identities=14% Similarity=0.155 Sum_probs=109.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---HHH
Q 046803 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL-PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA---PAV 379 (580)
Q Consensus 304 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~ 379 (580)
..|+...-..|..+....|+..+|...|++... |+- .|....-.+.++....+++.+|...+++.+...|+ +..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567777777888999999999999999999875 554 46777788888999999999999999777755553 445
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
...+...+...|.++.|+..|+.++..-|. +..-......+.++|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 567788899999999999999999998886 66677778889999999988876666554
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.78 E-value=0.0011 Score=63.36 Aligned_cols=135 Identities=13% Similarity=0.184 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA-CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467888888888888999999999998542 2234444444443 333577777999999999865 456778889999
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCCCHH----HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKPAPA----VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
.+.+.|+.+.|..+|++.+..-|... +|...+.--.+.|+.+....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999987666544 899999999999999999999999999888743
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=3.8e-05 Score=45.72 Aligned_cols=31 Identities=45% Similarity=0.764 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 203 (580)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
No 170
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.73 E-value=9e-05 Score=54.02 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC-CchHHHHHHHHHHhcCC
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHK-NFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 408 (580)
+...|..+...+...|++++|+..|++++...|+ +..|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567788888999999999999999999988885 778999999999999 79999999999999887
No 171
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.73 E-value=0.00045 Score=65.99 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH---hHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHc------CCC-CCHH
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFAS---MRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVI------GEK-PAPA 378 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~-p~~~ 378 (580)
.|..|.+.|.-.|+++.|....+. +.+++|-.. ....+..+..++.-.|+++.|.+.|+..+ +.+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555556667888888876543 234455443 25567778888888999999999996654 222 2355
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc----C--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 379 VWTAMLGACKMHKNFDLGVEVAEHLLSV----E--PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 379 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+..+|..+|....+++.|+..+.+-+.+ + .....++.+|+++|...|..+.|....+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6778889999999999999888775432 2 22356889999999999999999887766543
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.72 E-value=8.8e-05 Score=53.31 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=53.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 383 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+...+...|++++|+..|+++++..|+++..+..++.++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 56678899999999999999999999999999999999999999999999999987643
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.61 E-value=6.6e-05 Score=54.56 Aligned_cols=54 Identities=22% Similarity=0.408 Sum_probs=21.8
Q ss_pred cCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 357 AGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 357 ~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
.|++++|+++|++.+...| +..++..+..+|.+.|++++|...++++....|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3444444444433333333 23333344444444444444444444444444443
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.57 E-value=0.00017 Score=52.32 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=48.6
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
...|++++|+..++++++..|+++..+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999987664
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.00033 Score=53.37 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=33.3
Q ss_pred cCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 046803 286 HGYGTEAVELFHRMRAHGV-RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 286 ~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 363 (580)
+|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++. . ...| +....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3455555555555554322 11222333344555555555555555544 1 1111 112222334455555555555
Q ss_pred HHHH
Q 046803 364 YKFV 367 (580)
Q Consensus 364 ~~~~ 367 (580)
++.+
T Consensus 78 i~~l 81 (84)
T PF12895_consen 78 IKAL 81 (84)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0028 Score=55.68 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=43.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHH---
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACK--- 388 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~--- 388 (580)
+...+...|++++|...|+.......-.+ ...++..+..+|...|++++|++.+++++...|+ ...+..+...+.
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 33334444445555444444432111001 1224444555555555555555555444444442 333444444443
Q ss_pred ----hcCCch-------HHHHHHHHHHhcCCC
Q 046803 389 ----MHKNFD-------LGVEVAEHLLSVEPE 409 (580)
Q Consensus 389 ----~~g~~~-------~a~~~~~~~~~~~p~ 409 (580)
..|+++ +|...++++++..|+
T Consensus 121 ~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 121 EQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 444544 455555566666665
No 177
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.47 E-value=0.12 Score=50.11 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=73.7
Q ss_pred hhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046803 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 328 (580)
+.-+...|....|.++-.+..-||-.-|...+.+|+..++|++-.++... .- .++.|-.++.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHHH
Confidence 44456678888888888887778888888888888888888777665432 11 2367777888888888888888
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046803 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367 (580)
Q Consensus 329 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 367 (580)
.+...+. +..-+.+|.++|++.+|.+.-
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 7766531 134667788888888887665
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.46 E-value=0.035 Score=53.31 Aligned_cols=128 Identities=16% Similarity=0.217 Sum_probs=65.1
Q ss_pred hhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhc
Q 046803 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH-GYGTEAVELFHRMRA----HGVRPN--NVTFVAVLSACAHA 321 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~pd--~~t~~~ll~a~~~~ 321 (580)
+..|.+.|++..|-+++.. +...|-.. |++++|++.|++..+ .| .+. ...+..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 3455666666666555443 34455555 667777776666543 12 111 13445556667777
Q ss_pred CCHHHHHHHHHHhHHhcCC----CCCH-HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC------HHHHHHHHHHHH
Q 046803 322 GLVQEGHRVFASMRQEYGL----LPGV-EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA------PAVWTAMLGACK 388 (580)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~----~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~ll~~~~ 388 (580)
|++++|.++|++.....-- ..+. ..+-..+-.+...|++..|.+.+++.....|. ......|+.+|.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 7777777777776543111 1112 12233344555667777777777666655442 233445555553
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.43 E-value=0.00044 Score=50.99 Aligned_cols=56 Identities=14% Similarity=0.264 Sum_probs=42.0
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..|.+.+++++|.+.++++++.+|+++..+...+.+|...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777654
No 180
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.36 E-value=0.009 Score=50.38 Aligned_cols=97 Identities=9% Similarity=0.031 Sum_probs=62.6
Q ss_pred hhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046803 245 ATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321 (580)
Q Consensus 245 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 321 (580)
.-.+..-+...|++++|.++|+.+.. .+..-|-.|...+...|++++|+..|.......+ -|...+-.+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 33444455667777777777776553 3445666777777777777777777777766432 2445666666777777
Q ss_pred CCHHHHHHHHHHhHHhcCCCC
Q 046803 322 GLVQEGHRVFASMRQEYGLLP 342 (580)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~p 342 (580)
|+.+.|++.|+..+...+-.|
T Consensus 117 G~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 117 DNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CCHHHHHHHHHHHHHHhccCh
Confidence 777777777777665444333
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.33 E-value=0.0018 Score=60.91 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC---cchHHHH
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN---PGHYVML 417 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 417 (580)
..|...+..+.+.|++++|...|++.+...|+ +..+.-+..+|...|++++|...|+.+++..|++ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34554555555667777777777666655554 2456667777777777777777777777766654 4455556
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 046803 418 SNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 418 ~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+.+|...|++++|.++++.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777778888888877777653
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.33 E-value=0.0082 Score=62.40 Aligned_cols=136 Identities=11% Similarity=0.104 Sum_probs=99.9
Q ss_pred CCCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHc--------CCHHHHHHHHH
Q 046803 303 GVRPNNVTFVAVLSACAHA--G---LVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRA--------GLLNEAYKFVK 368 (580)
Q Consensus 303 g~~pd~~t~~~ll~a~~~~--g---~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 368 (580)
+.+.|...|...+.+.... + ....|..+|+++.+ ..|+ ...|..+..++... .++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3556778888888875543 2 37789999999874 4676 44555444433221 23445555554
Q ss_pred hHcC--CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 369 DVIG--EKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 369 ~~~~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
+... ..| ++.+|..+.......|++++|...++++++++|. ...|..++.+|...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4332 233 5678888877778889999999999999999994 78999999999999999999999999877553
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.32 E-value=0.00078 Score=49.62 Aligned_cols=64 Identities=16% Similarity=0.329 Sum_probs=53.1
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHH
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 415 (580)
..|.+.+++++|.+.++.++...|+ +..|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677889999999999888888884 677888888899999999999999999999988765443
No 184
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.1 Score=50.59 Aligned_cols=166 Identities=12% Similarity=-0.049 Sum_probs=110.3
Q ss_pred hhHHHHHH-HHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChH-----------
Q 046803 207 STTCVCVL-AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI----------- 274 (580)
Q Consensus 207 ~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------- 274 (580)
-.++..+- .++...|+.++|.++-..+++.. +.+....-.=..++--.++.+.|...|++....|+.
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~ 246 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMP 246 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhH
Confidence 34444433 34467789999998888887764 222222211223344567889999999887753332
Q ss_pred ----HHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHH
Q 046803 275 ----AWTAMISGYGMHGYGTEAVELFHRMRA---HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEH 346 (580)
Q Consensus 275 ----~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 346 (580)
.|..-.+-..++|++.+|.+.|.+.+. ..++|+...|.....+..+.|+.++|..--+... .+.|. +..
T Consensus 247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syika 323 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKA 323 (486)
T ss_pred HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHH
Confidence 233334445678999999999999886 2345566677777778889999999998777765 34443 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
|..-..++.-.+++++|.+-|++.+....+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 444455666778999999999888855444
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.29 E-value=0.025 Score=54.28 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=75.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHH
Q 046803 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA-GLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDL 353 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~ 353 (580)
.+..|...|++..|-..+.++ ...|... |++++|.+.|++...-+..... ...+..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 455666777776666555544 4456666 7889999888887654332222 4456678889
Q ss_pred HHHcCCHHHHHHHHHhHcCCC---C----CHH-HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 354 FGRAGLLNEAYKFVKDVIGEK---P----APA-VWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~~~~---p----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
+.+.|++++|.++|++..... | +.. .+...+-.+...||...|...+++..+..|.-
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999996654211 1 121 23334445667799999999999999888753
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.28 E-value=0.0038 Score=50.66 Aligned_cols=88 Identities=14% Similarity=0.074 Sum_probs=55.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC---CcchHHHHHHHHH
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE---NPGHYVMLSNIYA 422 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~ 422 (580)
+..++-..|+.++|+.+|++.+...++ ...+-.+.+++...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555667777777777666533222 234556666777777777777777777766666 4455555666677
Q ss_pred hcCChhHHHHHHHHH
Q 046803 423 LAGRMDRVEVVRNIM 437 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m 437 (580)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777766543
No 187
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.28 E-value=0.19 Score=48.39 Aligned_cols=251 Identities=16% Similarity=0.168 Sum_probs=156.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCChh--HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHH
Q 046803 185 NGFAKEAIGLFNLMRDFGVNPDST--TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262 (580)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 262 (580)
.|+++.|.+-|+.|... |... -+..|.-..-+.|+.+.|+++-+..-..- +.-...+.+.+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 56777777777777641 2211 12223333345677777777766665543 333455667777777888888888
Q ss_pred HHHHhcc-----CCChH--HHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHH
Q 046803 263 EIFDMMS-----ELNVI--AWTAMISGYGM---HGYGTEAVELFHRMRAHGVRPNNVTF-VAVLSACAHAGLVQEGHRVF 331 (580)
Q Consensus 263 ~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~-~~ll~a~~~~g~~~~a~~~~ 331 (580)
++.+.-. ++++. .-..|+.+-+. ..+...|...-.+..+ +.||.+.- ..-..++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 8877544 23332 12223322221 2345555555444443 67776543 33456889999999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 046803 332 ASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE--AYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 408 (580)
+.+-+ ..|.+..+...+ +.|.|+... ....- +....+|| ..+...+..+-...|++..|..-.+.+....|
T Consensus 287 E~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa~-~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 287 ETAWK---AEPHPDIALLYV--RARSGDTALDRLKRAK-KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHHH-HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 98864 356655553333 345565322 11111 22355675 66677788888899999999999999999998
Q ss_pred CCcchHHHHHHHHHh-cCChhHHHHHHHHHHhCCCccCCceeE
Q 046803 409 ENPGHYVMLSNIYAL-AGRMDRVEVVRNIMIQKGLKKHVGYST 450 (580)
Q Consensus 409 ~~~~~~~~l~~~y~~-~g~~~~a~~~~~~m~~~~~~~~~~~s~ 450 (580)
. .+.|..|+++-.. .|+-.++...+-+..+. +.+|.|+-
T Consensus 361 r-es~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW~a 400 (531)
T COG3898 361 R-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAWTA 400 (531)
T ss_pred h-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcccc
Confidence 7 5788899988764 49999999988877654 34555543
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.26 E-value=0.011 Score=47.94 Aligned_cols=107 Identities=17% Similarity=0.085 Sum_probs=71.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---cHHHhhHHhhH
Q 046803 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPD--STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV---NVVLATSLINM 251 (580)
Q Consensus 177 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~ 251 (580)
.+..++-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..+++...... +. +..+...+..+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHH
Confidence 345667778899999999999888876654 2356667788888889999988888887652 21 22333334446
Q ss_pred hhhcCCHHHHHHHHHhccCCChHHHHHHHHHHH
Q 046803 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284 (580)
Q Consensus 252 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 284 (580)
+...|+.++|.+.+-....++...|.--|..|+
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888887776655444445544444443
No 189
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.24 E-value=0.011 Score=52.43 Aligned_cols=105 Identities=17% Similarity=0.285 Sum_probs=76.2
Q ss_pred CCChhHHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHH
Q 046803 204 NPDSTTCVCVLAACAQ-----LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278 (580)
Q Consensus 204 ~p~~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 278 (580)
..|..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~----------- 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA----------- 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH-----------
Confidence 3466677777776653 46778888888999999999999999999998876 3321 1112221
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 046803 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 323 (580)
+..-| ..+.+-|++++++|...|+.||..|+..|++.+.+.+.
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 23457899999999999999999999999999976654
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.22 E-value=0.005 Score=48.16 Aligned_cols=81 Identities=15% Similarity=0.028 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhCC--------ChHHHHHHHHHHHHcCCCCcHHH
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGV-NPDSTTCVCVLAACAQLG--------DIDLGRWVHEFIVGQGLDVNVVL 244 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 244 (580)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-+...+|..++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777778999999999999999999 899999999999987654 23456778889998899999999
Q ss_pred hhHHhhHhhh
Q 046803 245 ATSLINMYAR 254 (580)
Q Consensus 245 ~~~li~~y~~ 254 (580)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.21 E-value=0.0059 Score=47.76 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=67.5
Q ss_pred hHHHHHHHHHcCCCccHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccCC--------hHHHHHHHHHHHHhCCCCchHH
Q 046803 73 LFNTLIIRNSKANFSTDSLLFYRRMIVSNI-SPSNYTFSAVIKSCAHLSI--------LNLGRAVHCHVFVSGYDSDLHV 143 (580)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~ 143 (580)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++..- +-....+|+.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777778999999999999999999 9999999999999875432 3346788999999999999999
Q ss_pred HHHHHHHHHh
Q 046803 144 QAALVNFYAK 153 (580)
Q Consensus 144 ~~~li~~y~~ 153 (580)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 192
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.20 E-value=0.0041 Score=59.53 Aligned_cols=130 Identities=12% Similarity=0.121 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHhHcCCCC-CHHHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR-AGLLNEAYKFVKDVIGEKP-APAVWTAMLGA 386 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~ 386 (580)
.+|..++....+.+..+.|+.+|.++.+. -..+...|.....+-.+ .++.+.|..+|+..+..-| +...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888989999999999999743 22345556555555444 5666679999988885545 67889999999
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 387 CKMHKNFDLGVEVAEHLLSVEPENP---GHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+...++.+.|..+|++.+..-|.+. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766543 57888888889999999999999988764
No 193
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.19 E-value=0.38 Score=49.88 Aligned_cols=131 Identities=11% Similarity=-0.067 Sum_probs=81.4
Q ss_pred ChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHC-CCCC--------ChhhHHHHHHHHHccCChHHH
Q 046803 55 FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISP--------SNYTFSAVIKSCAHLSILNLG 125 (580)
Q Consensus 55 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p--------~~~t~~~ll~a~~~~~~~~~a 125 (580)
.+++|.+..+.- |.+..|..|.....+.-.++.|...|-+.-.- |++. +...-..-+. +--|.+++|
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHh
Confidence 567777777665 45567888887776666677777766554321 2221 0000011111 234788888
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCC-----ChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 046803 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK-----SVVAWNSMISGYEQNGFAKEAIGLFNLM 198 (580)
Q Consensus 126 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m 198 (580)
+++|-.+-++. .-|.++.+.|++-...++++.-... -..+|+.+...++....|++|.+.|..-
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88887776554 2466788888888888888754322 1247777777777777777777776553
No 194
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.18 E-value=0.00027 Score=42.89 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 046803 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432 (580)
Q Consensus 400 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 432 (580)
|+++++++|+|+.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 195
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.18 E-value=0.46 Score=50.79 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=105.8
Q ss_pred ChhhhchHHHHHhccCChhHHHHHHccCCC--CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046803 39 SRSMLTKLLSLVCDAGFITYAQRIFFCIPS--PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC 116 (580)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 116 (580)
|..+...|-..|-.++.+++|..++++... |+..-...+..+|++-+.+.+-.+.--+|.+ ..+-+.+.|-++++..
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLI 154 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHH
Confidence 677888888888889999999999999876 5544445556677877776543333333322 2333566676777665
Q ss_pred HccC-C---------hHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhCCCHHHHHHHHcc-----CCCCChhHHHHHHH
Q 046803 117 AHLS-I---------LNLGRAVHCHVFVSG-YDSDLHVQAALVNFYAKSNNVDVARKVFDR-----MPDKSVVAWNSMIS 180 (580)
Q Consensus 117 ~~~~-~---------~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-----~~~~~~~~~~~li~ 180 (580)
...- . +..|.+..+.+++.+ ...+..-.-.-.......|.+++|..++.. ...-+...-|--+.
T Consensus 155 lqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 155 LQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred HHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 4321 1 234566666666654 211221122223445678899999999832 22334555566778
Q ss_pred HHHhCCChhHHHHHHHHHHHCC
Q 046803 181 GYEQNGFAKEAIGLFNLMRDFG 202 (580)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g 202 (580)
.+...+++.+..++-.++...|
T Consensus 235 llk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhcChHHHHHHHHHHHHhC
Confidence 8889999999999999999876
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.18 E-value=0.0027 Score=60.85 Aligned_cols=255 Identities=15% Similarity=0.063 Sum_probs=159.4
Q ss_pred HHHcCCCccHHHHHHHHHHHCCCCCChh----hHHHHHHHHHccCChHHHHHHHHHHHH--h--CC-CCchHHHHHHHHH
Q 046803 80 RNSKANFSTDSLLFYRRMIVSNISPSNY----TFSAVIKSCAHLSILNLGRAVHCHVFV--S--GY-DSDLHVQAALVNF 150 (580)
Q Consensus 80 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~--~--g~-~~~~~~~~~li~~ 150 (580)
-+++.|+.+..+.+|+..++.|.. |.. .|..+-.+|.-.+++++|.++|..=+. . |- .-.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 478899999999999999988754 443 466667777788899999988754221 1 10 0112233334555
Q ss_pred HHhCCCHHHHHHHHccCC-------CC--ChhHHHHHHHHHHhCCC--------------------hhHHHHHHHHHH--
Q 046803 151 YAKSNNVDVARKVFDRMP-------DK--SVVAWNSMISGYEQNGF--------------------AKEAIGLFNLMR-- 199 (580)
Q Consensus 151 y~~~g~~~~A~~~f~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~-- 199 (580)
+--.|.+++|.-.-.+-. .+ ...++..+...|...|+ ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 555677777654432211 11 12344456666655443 123444443221
Q ss_pred --HCCCC-CChhHHHHHHHHHHhCCChHHHHHHHHHHHH----cC-CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc--
Q 046803 200 --DFGVN-PDSTTCVCVLAACAQLGDIDLGRWVHEFIVG----QG-LDVNVVLATSLINMYARCGNVSKAREIFDMMS-- 269 (580)
Q Consensus 200 --~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-- 269 (580)
+.|-. .-...|..+.+.|.-+|+++.|...|+.-+. .| -......+..|.++|.-.|+++.|.+.|+...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11100 1123455666666667889999888876543 23 12235577888999999999999999887643
Q ss_pred -----CCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 270 -----ELN--VIAWTAMISGYGMHGYGTEAVELFHRMRAH-----GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 270 -----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
.+. ..+..+|.+.|.-...+++|+.++.+-+.- ...-....+.+|..++...|..++|..+.....
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 232 345667888888888899999888764421 112234678889999999999999887766544
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.17 E-value=0.083 Score=49.26 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEPEN---PGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
.+..-|.+.|.+..|+.-++.+++.-|+. +.+...+..+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34456888999999999999999877764 4566788899999999999999887664
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.13 E-value=0.078 Score=45.57 Aligned_cols=134 Identities=9% Similarity=0.035 Sum_probs=100.8
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 046803 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350 (580)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 350 (580)
|++.---.|..++...|+..+|...|++...--..-|......+.++....++...|...++.+.+...-..+++..-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44555556888999999999999999998875556677888899999999999999999999887532111134445567
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
...|...|+..+|+.-|+..+..-|++..-......+.++|+.+++..-+..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 888999999999999998788777876554444455667777777766555544
No 199
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.08 E-value=0.0024 Score=63.01 Aligned_cols=98 Identities=11% Similarity=0.038 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP----AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 418 (580)
+...++.+..+|.+.|++++|+..|++++.+.|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 36677778888888888888888888888888863 34788888888888888888888888876321 121111
Q ss_pred H--HHHhcCChhHHHHHHHHHHhCCCc
Q 046803 419 N--IYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 419 ~--~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
. .+....+.++..++++.+.+-|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112233445666777777766653
No 200
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.07 E-value=0.26 Score=45.94 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-H---HHHHHHHHHhCCChHHHHHHHHHHHHc
Q 046803 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST-T---CVCVLAACAQLGDIDLGRWVHEFIVGQ 236 (580)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t---~~~ll~a~~~~~~~~~a~~~~~~~~~~ 236 (580)
...+-.....+.+.|++++|.+.|+++... -|+.. . ...+..++.+.++++.|...++..++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333333444556667777777777776653 23322 1 133445556666666666666666655
No 201
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.05 E-value=0.0058 Score=60.94 Aligned_cols=116 Identities=12% Similarity=0.088 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHccCCCC------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 046803 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDK------SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213 (580)
Q Consensus 140 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 213 (580)
+......+++......+++.+..++.+.... -..+..++++.|.+.|..++++.+++.=...|+-||..|++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334444455555555555555555444321 1124457777777777777777777777777777777777777
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhc
Q 046803 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255 (580)
Q Consensus 214 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 255 (580)
|+.+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777776665444544444444444333
No 202
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.03 E-value=0.012 Score=58.79 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=93.6
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC----CChhH
Q 046803 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS--GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD----KSVVA 174 (580)
Q Consensus 101 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~ 174 (580)
+...+......++..+....+++.++.++-..... ....-+.+..++|..|.+.|..+.+..+++.=.+ +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456667777888888888888888877776654 2222345566899999999999999998876554 78889
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhC
Q 046803 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220 (580)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 220 (580)
+|.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888777777888888888877765
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.01 E-value=0.012 Score=55.34 Aligned_cols=102 Identities=10% Similarity=0.083 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHH
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAML 384 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll 384 (580)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+..+...|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555777777777777776542221 1234455777777788888888888666643342 45566666
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 385 GACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
..+...|+.+.|...|+++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677778888888888888888888753
No 204
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.95 E-value=0.47 Score=46.83 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=48.7
Q ss_pred HHHHHHHHH--HHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 378 AVWTAMLGA--CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 378 ~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
..-|.|..| ...+|++.++.-.-.-+.+..| ++.+|..++-+.....++++|..++..+
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344455444 4678999999888888889999 6999999999999999999999999865
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.94 E-value=0.0012 Score=42.94 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHH
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 419 (580)
.+|..+..+|...|++++|+++++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788889999999999999999999999998888777654
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.93 E-value=0.047 Score=55.68 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHh
Q 046803 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267 (580)
Q Consensus 188 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 267 (580)
+-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|.++|.+ .|. -|..+.+|.....++.|.++...
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~------enRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGH------ENRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCc------hhhHHHHHHHHHHHHHHHHHhhc
Confidence 34455556778888877887654 3455667888888777754 332 13345566666666666665543
Q ss_pred ccC-------CChHHH-------HHHHHHHHhcCChHHHHHHHHH------HHhCCC---CCCHHHHHHHHHHHHhcCCH
Q 046803 268 MSE-------LNVIAW-------TAMISGYGMHGYGTEAVELFHR------MRAHGV---RPNNVTFVAVLSACAHAGLV 324 (580)
Q Consensus 268 ~~~-------~~~~~~-------~~li~~~~~~g~~~~A~~~~~~------m~~~g~---~pd~~t~~~ll~a~~~~g~~ 324 (580)
-.. +.-..| .+-...+...|+.++|..+.-+ +.+-+- ..+..+...+..-+.+...+
T Consensus 684 g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred CChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcccc
Confidence 221 001111 1223344455666666554321 111111 22344555555556667778
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHH-H----------HHHHHHHHhcCCc
Q 046803 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV-W----------TAMLGACKMHKNF 393 (580)
Q Consensus 325 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~----------~~ll~~~~~~g~~ 393 (580)
..|-++|.+|-. ...++++....+++++|..+-++--...||+.. | .---.+|.+.|+-
T Consensus 764 gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 764 GLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred chHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcch
Confidence 888888887732 234778888899999999888433344455321 1 1122344555555
Q ss_pred hHHHHHHHHHH
Q 046803 394 DLGVEVAEHLL 404 (580)
Q Consensus 394 ~~a~~~~~~~~ 404 (580)
.+|.++++++.
T Consensus 834 ~EA~~vLeQLt 844 (1081)
T KOG1538|consen 834 REAVQVLEQLT 844 (1081)
T ss_pred HHHHHHHHHhh
Confidence 55555555543
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.41 Score=49.64 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHc---CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVI---GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
..++..|..--...|+++.|+..--..- .+-|-..+|+.|.-+.+....+...-++|-++.
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 3344445555556677777765431111 333445556555444444444444444444433
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.077 Score=48.20 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC----CCCCHHHHHHHH
Q 046803 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG----LLPGVEHHVCMV 351 (580)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li 351 (580)
-+.++..+.-.|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|..+|+...+..+ +.-...+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3456666666777888888888888866566677777888888889999999999987655422 222233333344
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
..|.-++++.+|...+.+.+...| |+...|.-.-...-.|+...|++..+.+++..|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 556667788888888866655555 34444444444455678888888888888887763
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.048 Score=50.87 Aligned_cols=104 Identities=10% Similarity=0.092 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHhHcCCCC-CHHHHH
Q 046803 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG---LLNEAYKFVKDVIGEKP-APAVWT 381 (580)
Q Consensus 306 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~p-~~~~~~ 381 (580)
-|...|..|..+|...|+.+.|..-|....+-.| ++...+..+..++..+. ...++.++|++++..+| |+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3567888888888888888888888888764322 34556666666655432 35678889988888888 467777
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
.|...+...|++.+|...++.|++..|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 788888999999999999999998887653
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.83 E-value=0.2 Score=49.14 Aligned_cols=161 Identities=11% Similarity=0.113 Sum_probs=97.6
Q ss_pred HHhhHhhhcCCHHHHHHHHHhccCC---C----hHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 247 SLINMYARCGNVSKAREIFDMMSEL---N----VIAWTAMISGYGM---HGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 247 ~li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
.++-.|-...+++...++++.+... + ...-....-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777888888888777653 1 1111223334455 7888888888888666556677777776666
Q ss_pred HHHh---------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHH---HhHc------CCC
Q 046803 317 ACAH---------AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE----AYKFV---KDVI------GEK 374 (580)
Q Consensus 317 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~---~~~~------~~~ 374 (580)
.|-. ....++|...|.+. +.+.|+..+--.++..+...|...+ ..++- ...+ ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 22366777777654 3555654443334444444443221 11211 1111 112
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 375 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
.|--.+.+++.++.-.|+.+.|.++++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344556788999999999999999999999988763
No 211
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.80 E-value=0.013 Score=46.90 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=75.6
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc----chHHHHHHHHHhcCC
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP----GHYVMLSNIYALAGR 426 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~y~~~g~ 426 (580)
-++...|+++.|++.|.+.+..-| .+..||.=..+++-.|+.++|..-+++++++..+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456788999999999988887777 478899999999999999999999999998763322 357778888999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 046803 427 MDRVEVVRNIMIQKGL 442 (580)
Q Consensus 427 ~~~a~~~~~~m~~~~~ 442 (580)
-+.|..-|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998877663
No 212
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.79 E-value=0.57 Score=45.51 Aligned_cols=111 Identities=12% Similarity=0.138 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~ 388 (580)
.+.+..+.-|...|....|.++-. ++.+ |+...|...+.+|+..+++++-.++. .. +-.+.-|...+.+|.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa-~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFA-KS---KKSPIGYEPFVEACL 248 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHH-hC---CCCCCChHHHHHHHH
Confidence 345556667778898888877654 4444 88889999999999999999988876 32 234567889999999
Q ss_pred hcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 389 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
..|+..+|.....++ .+..-+.+|.++|+|.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888872 2256788999999999998875443
No 213
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.77 E-value=0.011 Score=52.43 Aligned_cols=98 Identities=9% Similarity=0.054 Sum_probs=76.5
Q ss_pred HHHHHccC--CCCChhhHHHHHHHHHcC-----CCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC-----------
Q 046803 59 AQRIFFCI--PSPDSFLFNTLIIRNSKA-----NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS----------- 120 (580)
Q Consensus 59 A~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----------- 120 (580)
-...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+-+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 44566665 457888888888888754 666667777888999999999999999998876421
Q ss_pred -----ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Q 046803 121 -----ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156 (580)
Q Consensus 121 -----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 156 (580)
+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345688889999999999999999999888876654
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.48 Score=49.65 Aligned_cols=302 Identities=13% Similarity=0.130 Sum_probs=145.5
Q ss_pred HHHHHhccCChhHHHHHHccCCCCC---hhhHHHHHHHHHcCCCc--cHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 046803 46 LLSLVCDAGFITYAQRIFFCIPSPD---SFLFNTLIIRNSKANFS--TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120 (580)
Q Consensus 46 ll~~~~~~~~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 120 (580)
+|+-+..++.+..|+++-..+..|- ...+.....-+.+..+. +++++...+=...-. -+..+|..+.+-.-..|
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEG 521 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcC
Confidence 3444447778888888888877665 34455555556655332 234444433332222 24456777777777778
Q ss_pred ChHHHHHHHHHHHHhCCC----CchHHHHHHHHHHHhCCCHHHHHHHHccCCCC-ChhHHH--------------HHHH-
Q 046803 121 ILNLGRAVHCHVFVSGYD----SDLHVQAALVNFYAKSNNVDVARKVFDRMPDK-SVVAWN--------------SMIS- 180 (580)
Q Consensus 121 ~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~--------------~li~- 180 (580)
+.+.|..+.+.=...+.. .+..-+..-+.-..+.|+.+-...++-.+.+. +...+. -++.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~ 601 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRH 601 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHh
Confidence 888887776532222110 01111222333344555555555554443321 111111 1110
Q ss_pred -------HHHhCCChhHHHHHHHHH--H----HCCCCCChhHHHHHHHHHHhCCChHHHHHHHH----------HHH-Hc
Q 046803 181 -------GYEQNGFAKEAIGLFNLM--R----DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE----------FIV-GQ 236 (580)
Q Consensus 181 -------~~~~~g~~~~A~~~~~~m--~----~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~----------~~~-~~ 236 (580)
.+-+.++-.+++..|..- . ..|..|+ .....++|++........+..+ .+. +.
T Consensus 602 ~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~ 678 (829)
T KOG2280|consen 602 QDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF 678 (829)
T ss_pred hchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 111122222222222110 0 0122222 2333444444433221111111 111 11
Q ss_pred CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 237 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
|......+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+. ....|.-...
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 2112222222333344556777777777777776777777777777777777766655544432 1344555667
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 367 (580)
+|.+.|+.++|.+++.+.. |.. -.+.+|.+.|++.+|.++-
T Consensus 753 ~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHH
Confidence 7777777777777665442 111 3566677777777776655
No 215
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.75 E-value=0.43 Score=43.55 Aligned_cols=197 Identities=15% Similarity=0.114 Sum_probs=115.3
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhcc-----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMS-----ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
..........+...+++..+...+.... ......+......+...+...++...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3445555555666666666666555443 12334455555555566666666666666665332221 11112222
Q ss_pred -HHHhcCCHHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcC
Q 046803 317 -ACAHAGLVQEGHRVFASMRQEYGL--LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA--PAVWTAMLGACKMHK 391 (580)
Q Consensus 317 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~ll~~~~~~g 391 (580)
++...|+++.+...+..... ... ......+......+...++.++|...+.+.+...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56667777777777776632 111 112333333444456677777777777666655554 456667777777777
Q ss_pred CchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 392 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+++.|...+.......|.....+..+...+...|.++++...+....+.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777765555666666666666677777777766553
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.11 Score=47.33 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=108.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCC--CCh--------hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 046803 144 QAALVNFYAKSNNVDVARKVFDRMPD--KSV--------VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213 (580)
Q Consensus 144 ~~~li~~y~~~g~~~~A~~~f~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 213 (580)
++.|...|.-..-+++-...|+.-.. ..+ ...+.++....-.|.+.-.+.++.+.++...+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45555555544444444444443322 122 23456677777778888888888888886556677777888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcC-----CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHh
Q 046803 214 LAACAQLGDIDLGRWVHEFIVGQG-----LDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGM 285 (580)
Q Consensus 214 l~a~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 285 (580)
.+.-.+.|+.+.|...++...+.. +.-+..+.......|.-.+++..|...|.+++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888888899999988888776543 233333444444567777888888888887765 455666665555566
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHH
Q 046803 286 HGYGTEAVELFHRMRAHGVRPNNVT 310 (580)
Q Consensus 286 ~g~~~~A~~~~~~m~~~g~~pd~~t 310 (580)
.|+..+|++.++.|.+. .|...+
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccch
Confidence 78888888888888874 444433
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.72 E-value=0.63 Score=45.04 Aligned_cols=302 Identities=15% Similarity=0.054 Sum_probs=168.6
Q ss_pred ChhHHHHHHccCCCCChhhHHHHHHHHHc--CCCccHHHHHHHHHHHCCCCCChhhHHHHHHHH--HccCChHHHHHHHH
Q 046803 55 FITYAQRIFFCIPSPDSFLFNTLIIRNSK--ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC--AHLSILNLGRAVHC 130 (580)
Q Consensus 55 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~ 130 (580)
.+..+.+.|..-.. -.-|.+|-.++.- .|+-..|.++-.+-.+. +.-|...+..+|.+- .-.|+.+.|++-|+
T Consensus 68 sP~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 68 SPYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE 144 (531)
T ss_pred CcHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 44555566644321 2356677666654 46666777666554332 455777777777664 34699999999999
Q ss_pred HHHHhCCCCchH--HHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CC
Q 046803 131 HVFVSGYDSDLH--VQAALVNFYAKSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-VN 204 (580)
Q Consensus 131 ~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 204 (580)
.|+.. |... -...|.----+.|+.+.|+..-+.... | -.-.|.+.+...+..|+|+.|+++++.-+... +.
T Consensus 145 AMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 145 AMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 88742 1111 112233333567888888877766543 2 23578888999999999999999998776542 34
Q ss_pred CChh--HHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCcHHH-hhHHhhHhhhcCCHHHHHHHHHhccC--CChHHH
Q 046803 205 PDST--TCVCVLAACAQ---LGDIDLGRWVHEFIVGQGLDVNVVL-ATSLINMYARCGNVSKAREIFDMMSE--LNVIAW 276 (580)
Q Consensus 205 p~~~--t~~~ll~a~~~---~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~ 276 (580)
+|.. .-..|+.+-+. ..+...|+..-.+..+. .|+..- .-.-...|.+.|++.++-.+++.+-+ |.+..|
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia 299 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA 299 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence 4432 22233332211 12445555555555543 333221 22234567777777777777777654 333322
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 046803 277 TAMISGYGMHGYGTEAVELFHRMRA-HGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354 (580)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 354 (580)
.+..+++.|+ .++.-+++... ..++||. .+...+..+-...|++..|..--+... ...|....|..|.+.-
T Consensus 300 --~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIe 372 (531)
T COG3898 300 --LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIE 372 (531)
T ss_pred --HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHH
Confidence 2222333343 33333333332 1244543 445555566666677666665444443 3456666666565554
Q ss_pred HH-cCCHHHHHHHHHhHc
Q 046803 355 GR-AGLLNEAYKFVKDVI 371 (580)
Q Consensus 355 ~~-~g~~~~A~~~~~~~~ 371 (580)
.. .|+-.++...+.+.+
T Consensus 373 eAetGDqg~vR~wlAqav 390 (531)
T COG3898 373 EAETGDQGKVRQWLAQAV 390 (531)
T ss_pred hhccCchHHHHHHHHHHh
Confidence 33 366666666665555
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.68 E-value=0.0033 Score=46.92 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
.|+.+...|.+.|++++|++.|++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555554443
No 219
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.018 Score=55.81 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.++..|..+|.+.+++..|++...++++++|+|..+.+.-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 457778888899999999999999999999999999999999999999999999999999874
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.66 E-value=0.4 Score=43.43 Aligned_cols=59 Identities=22% Similarity=0.069 Sum_probs=30.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 046803 178 MISGYEQNGFAKEAIGLFNLMRDFGVN--PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236 (580)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 236 (580)
....+.+.|++.+|.+.|+++...-.. --......++.++.+.|+++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666776666666653110 01123444555666666666666666665554
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.62 E-value=0.37 Score=43.69 Aligned_cols=142 Identities=12% Similarity=0.083 Sum_probs=70.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 046803 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPN--NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355 (580)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 355 (580)
.....+.+.|++.+|...|+++...-.... ......++.++.+.|+++.|...++...+.+.-.|... +...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHH
Confidence 344455566777777777776665321111 12344555566666677777666666665554444321 111111111
Q ss_pred HcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch-----------------HHHHH
Q 046803 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH-----------------YVMLS 418 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~ 418 (580)
........ +.. ....+....|...|+.+++.-|+++.. -..++
T Consensus 89 ~~~~~~~~-------~~~-------------~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 89 YYKQIPGI-------LRS-------------DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHH-------H-T-------------T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccc-------hhc-------------ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000 112223445666666666666664322 22577
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 046803 419 NIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 419 ~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..|.+.|.+..|..-++.+.+.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH
Confidence 8899999999999999998774
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.026 Score=54.65 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=101.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC
Q 046803 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 358 (580)
-.+.|.+.|++..|..-|++.... |. +...-+.++..... . .-...+..+.-.|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhh
Confidence 355677888888888888876541 00 11111112222111 1 12345666888899999
Q ss_pred CHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH-HHHHHH
Q 046803 359 LLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV-EVVRNI 436 (580)
Q Consensus 359 ~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~ 436 (580)
++.+|++...+.+..+| |+-..--=..+|...|+++.|+..|+++++++|.|-.+-..|+.+-.+..+..+. .++|..
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999989988887 5666666788999999999999999999999999988888888887776665554 778888
Q ss_pred HHhC
Q 046803 437 MIQK 440 (580)
Q Consensus 437 m~~~ 440 (580)
|..+
T Consensus 352 mF~k 355 (397)
T KOG0543|consen 352 MFAK 355 (397)
T ss_pred Hhhc
Confidence 8654
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.60 E-value=0.015 Score=57.68 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHhHcCC
Q 046803 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV----EHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373 (580)
Q Consensus 307 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 373 (580)
+...++.+..+|.+.|++++|...|++..+ +.|+. ..|..+..+|...|++++|++.+++++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446788888899999999999999988773 45653 34777889999999999999999888765
No 224
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=1.4 Score=46.42 Aligned_cols=316 Identities=13% Similarity=0.136 Sum_probs=167.5
Q ss_pred CCCCChhhHHH-----HHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC---CHHHHHHHHccCCC--C
Q 046803 101 NISPSNYTFSA-----VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN---NVDVARKVFDRMPD--K 170 (580)
Q Consensus 101 g~~p~~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~~~~--~ 170 (580)
|+..+..-|.. ++.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +.+-+.++=+++.. .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 45444444433 3444455566666666554442111111 445555555555542 22333344444444 3
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHc----------
Q 046803 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN----PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ---------- 236 (580)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------- 236 (580)
..++|.....---+.|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+...+++-.+.+.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666677777776666542222111 11222334445555666666655555444432
Q ss_pred -CCCCcHHHhhHHhh---------HhhhcCCHHHHHHHHHhcc-------CCChHHHHHHHHHHHhcCC---hHHH----
Q 046803 237 -GLDVNVVLATSLIN---------MYARCGNVSKAREIFDMMS-------ELNVIAWTAMISGYGMHGY---GTEA---- 292 (580)
Q Consensus 237 -~~~~~~~~~~~li~---------~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~---~~~A---- 292 (580)
..+....+|.-++. .|- .++..++...|..-. +.-..........+++... ..+|
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 11222222222221 122 222222222221100 1111122233344444332 1111
Q ss_pred ---HHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046803 293 ---VELFHRMRA-HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368 (580)
Q Consensus 293 ---~~~~~~m~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 368 (580)
+.+.+.+.. .|..-...|.+--+.-+...|+..+|.++-.+.+ .||...|-.-+.+++..+++++-+++-
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfA- 738 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFA- 738 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHH-
Confidence 222233322 2333344455666667778899999988766553 388888888899999999999988877
Q ss_pred hHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 046803 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 369 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 435 (580)
+... .+.-|.....+|.+.|+.++|.+.+-+.-.+ .....+|.+.|++.+|.++--
T Consensus 739 kskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 739 KSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 3322 2455777889999999999999887765322 267889999999999987644
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.49 E-value=0.0042 Score=46.38 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhc----CCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSV----EPE---NPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 377 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
..+++.+...|...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457889999999999999999999998854 222 245788999999999999999999988654
No 226
>PRK11906 transcriptional regulator; Provisional
Probab=96.46 E-value=0.068 Score=53.20 Aligned_cols=78 Identities=6% Similarity=0.012 Sum_probs=43.1
Q ss_pred HHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 361 NEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 361 ~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
.+|.++.++++...| |+.....+..+....++++.|...|+++..++|+.+.+|...+....-+|+.++|.+.+++..
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344555545555554 355555555555555556666666666666666655555555555555666666655555543
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.39 E-value=0.075 Score=45.24 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+...++..+...|++++|...+++++..+|.+...|..++.+|...|+..+|.++++++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566777888899999999999999999999999999999999999999999999988753
No 228
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.37 E-value=1.5 Score=45.15 Aligned_cols=379 Identities=12% Similarity=0.091 Sum_probs=219.9
Q ss_pred hhhhchHHHHHhccC----ChhHHHHHHccCCC--CChh-hHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHH
Q 046803 40 RSMLTKLLSLVCDAG----FITYAQRIFFCIPS--PDSF-LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAV 112 (580)
Q Consensus 40 ~~~~~~ll~~~~~~~----~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 112 (580)
-..|+.|| .-. +++.++.+++.+.. |... -|-....-=.+.|..+.+..+|++-+. |++-....|...
T Consensus 45 f~~wt~li----~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 45 FDAWTTLI----QENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred ccchHHHH----hccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 34456666 333 44555666665543 4443 355555556677888888888888775 355555556555
Q ss_pred HHHHH-ccCChHHHHHHHHHHHHh-CCC-CchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHh---C-
Q 046803 113 IKSCA-HLSILNLGRAVHCHVFVS-GYD-SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ---N- 185 (580)
Q Consensus 113 l~a~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~---~- 185 (580)
+.-+. ..|+.+..+..|+.++.. |.. .....|...|..-..++++.....+|+++.+-....++..-.-|.+ .
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~ 199 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQN 199 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcC
Confidence 54443 457777777788777654 321 2345677777777788888888888888776444444444444332 2
Q ss_pred -----CChhHHHHHHHHHHHC----CCCCChhHHHHHHHHHHh-CCChHHHHH------------------------HHH
Q 046803 186 -----GFAKEAIGLFNLMRDF----GVNPDSTTCVCVLAACAQ-LGDIDLGRW------------------------VHE 231 (580)
Q Consensus 186 -----g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~~~-~~~~~~a~~------------------------~~~ 231 (580)
-..+++.++=...... -..+.......-+.--.. .+.++.+.. .++
T Consensus 200 ~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE 279 (577)
T KOG1258|consen 200 EEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFE 279 (577)
T ss_pred ChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhh
Confidence 2234444433332210 000111111111111111 111122221 111
Q ss_pred HHHHcC-------CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 232 FIVGQG-------LDVNVVLATSLINMYARCGNVSKAREIFDMMSEL---NVIAWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 232 ~~~~~~-------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
.-++.. .+++..+|...++.-.+.|+.+.+.-+|++..-| -..-|-..+.-.-..|+.+-|-.++....+
T Consensus 280 ~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 280 EGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred hhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 111110 1234567777788788888888888888877643 223455555555555888888777776655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHH---HHHHhHcCCCCCH
Q 046803 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAY---KFVKDVIGEKPAP 377 (580)
Q Consensus 302 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~~~~~~p~~ 377 (580)
--++-...+-..-..-+-..|+...|..+++.+..++ |+ +..-..-+....+.|..+.+. +++....+..-+.
T Consensus 360 i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~ 436 (577)
T KOG1258|consen 360 IHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENN 436 (577)
T ss_pred hcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCc
Confidence 3222222222222223456789999999999998753 55 444445567778999999988 6663333333333
Q ss_pred HHHHHHHH-----HHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 378 AVWTAMLG-----ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 378 ~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
.+...+.- .+.-.++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 437 ~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 437 GILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 33333322 23446789999999999999999999999999888776653
No 229
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.29 E-value=0.31 Score=39.49 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=81.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046803 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 363 (580)
.-.|..++..++..+.... .+..-++.++--....-+=+-..++++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3467777888888877653 244455555544444444455555555554322222 23444444
Q ss_pred HHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
...+ -.++ .+..-...-+......|.-+.-.+++..+.+.+..+|.....++++|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~-~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECY-AKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHH-HHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHH-HHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4444 2222 123334455677788899999999999988766667899999999999999999999999999999875
No 230
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.24 E-value=0.47 Score=48.78 Aligned_cols=95 Identities=13% Similarity=0.037 Sum_probs=48.0
Q ss_pred HHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 046803 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341 (580)
Q Consensus 262 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 341 (580)
.++-+++...+..+...+...+.+...+.-|-++|.+|-.. .+++......++|++|..+-++.. .+.
T Consensus 736 idI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP---e~~ 803 (1081)
T KOG1538|consen 736 IDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP---EFK 803 (1081)
T ss_pred HHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc---ccc
Confidence 33333333334444444444455555566666666666431 234455556677777766655443 233
Q ss_pred CCHHH-----------HHHHHHHHHHcCCHHHHHHHHH
Q 046803 342 PGVEH-----------HVCMVDLFGRAGLLNEAYKFVK 368 (580)
Q Consensus 342 p~~~~-----------~~~li~~~~~~g~~~~A~~~~~ 368 (580)
|++.. +.-.-.+|-++|+-.||..+++
T Consensus 804 ~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred ccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 33211 1112235556677777777773
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=96.18 E-value=0.29 Score=48.88 Aligned_cols=158 Identities=9% Similarity=0.067 Sum_probs=108.1
Q ss_pred HHH--HHHHHHHHhc-----CChHHHHHHHHHHHh-CCCCCCHH-HHHHHHHHHHh---------cCCHHHHHHHHHHhH
Q 046803 274 IAW--TAMISGYGMH-----GYGTEAVELFHRMRA-HGVRPNNV-TFVAVLSACAH---------AGLVQEGHRVFASMR 335 (580)
Q Consensus 274 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~pd~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 335 (580)
..| ..++.|.... ...+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555555442 134678888998882 33667654 33333332221 223456666666665
Q ss_pred HhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 336 QEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 336 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
.+.| |......+..++.-.|+++.|..+|+++....|| +.+|......+...|+.++|.+.+++.++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3344 5667777777778888899999999999999997 7778888888899999999999999999999986543
Q ss_pred HH--HHHHHHHhcCChhHHHHHHH
Q 046803 414 YV--MLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 414 ~~--~l~~~y~~~g~~~~a~~~~~ 435 (580)
-. ..+++|... ..++|.+++-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHh
Confidence 33 334456655 4667776654
No 232
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.18 E-value=0.1 Score=49.71 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=22.4
Q ss_pred HhCCChhHHHHHHHHHHHC--CCCCChhHHHHHHHHHHhCCChHHHHH
Q 046803 183 EQNGFAKEAIGLFNLMRDF--GVNPDSTTCVCVLAACAQLGDIDLGRW 228 (580)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~ 228 (580)
.+..+.++|+..+.+-... ....-..++..+..+.+..|.++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 3455666666666555432 001112345555555555555555443
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.06 E-value=1.1 Score=40.73 Aligned_cols=198 Identities=15% Similarity=0.114 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CCh-HHHHHHHH-H
Q 046803 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--LNV-IAWTAMIS-G 282 (580)
Q Consensus 208 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~ 282 (580)
..+......+...+.+..+...+...... ........+..+...+...+++..+.+.+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444445555555555555555554432 2233444555555555666666666666665553 111 22222333 6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc
Q 046803 283 YGMHGYGTEAVELFHRMRAHGVRP----NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRA 357 (580)
Q Consensus 283 ~~~~g~~~~A~~~~~~m~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 357 (580)
+...|+.++|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 7788888888888888755 233 2334444444567788899999988888752 233 366777788888888
Q ss_pred CCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 358 GLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 358 g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
+++++|...+.......|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8999999999888777776 455566666666777799999999999988876
No 234
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.97 E-value=0.13 Score=42.17 Aligned_cols=49 Identities=10% Similarity=0.208 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 304 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
..|+..+..+++.+|+..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566666666666666666777777766666666665555666655554
No 235
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.93 E-value=0.076 Score=46.83 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=96.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcC
Q 046803 282 GYGMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG--VEHHVCMVDLFGRAG 358 (580)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g 358 (580)
.|-..|-+.-|.--|.+... +.|+. ..|+-+.--+...|+++.|.+.|+... .+.|. -.+.|.=|. +.-.|
T Consensus 74 lYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~---ELDp~y~Ya~lNRgi~-~YY~g 147 (297)
T COG4785 74 LYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL---ELDPTYNYAHLNRGIA-LYYGG 147 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh---ccCCcchHHHhcccee-eeecC
Confidence 46667777778777777776 67776 467777777889999999999999886 45564 333333333 33568
Q ss_pred CHHHHHHHHHhHcCCC---CCHHHHHHHHH--------------HHHhcCCchH-------------HHHHHHHHHhcCC
Q 046803 359 LLNEAYKFVKDVIGEK---PAPAVWTAMLG--------------ACKMHKNFDL-------------GVEVAEHLLSVEP 408 (580)
Q Consensus 359 ~~~~A~~~~~~~~~~~---p~~~~~~~ll~--------------~~~~~g~~~~-------------a~~~~~~~~~~~p 408 (580)
++.-|.+-+.+--... |-...|.-+.. -+.++.+-.- .+.+++++.+-..
T Consensus 148 R~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~ 227 (297)
T COG4785 148 RYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADAT 227 (297)
T ss_pred chHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhcc
Confidence 8888877663433333 33344544432 2222211111 1122233332222
Q ss_pred CC-------cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 409 EN-------PGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 409 ~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
++ ..+|.-|+.-|...|..++|..+|+.....+
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 22 3578889999999999999999999887654
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=1.2 Score=40.38 Aligned_cols=86 Identities=10% Similarity=0.054 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHcC------CCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhc----CCCCcchHHHH
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVIG------EKPAP-AVWTAMLGACKMHKNFDLGVEVAEHLLSV----EPENPGHYVML 417 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~~------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l 417 (580)
.....|.+..++++|-..+.+... .-|+. ..+.+.+-.+....++..|+..++.-.+. +|++..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 344555666666666555533321 11221 22444455555556777777777765443 25555666666
Q ss_pred HHHHHhcCChhHHHHHHH
Q 046803 418 SNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 418 ~~~y~~~g~~~~a~~~~~ 435 (580)
+.+| ..|+.+++.++..
T Consensus 235 L~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 235 LTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHh-ccCCHHHHHHHHc
Confidence 6666 3456666665543
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.77 E-value=0.29 Score=40.66 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=33.5
Q ss_pred HHHcCCHHHHHHHHHhHc---CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 354 FGRAGLLNEAYKFVKDVI---GEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~---~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
..+.|++++|.+.|+... +..| ....-..|+.+|.+.+++++|...+++.++++|.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 335666666666663322 2222 234445566666677777777777777777666654
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.72 E-value=0.97 Score=44.49 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=49.0
Q ss_pred HHHHHHHhCCCHHHHHHHHccCCCC---C----hhHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 046803 146 ALVNFYAKSNNVDVARKVFDRMPDK---S----VVAWNSMISGYEQ---NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215 (580)
Q Consensus 146 ~li~~y~~~g~~~~A~~~f~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 215 (580)
.|+-.|-...+++...++++.+... + ...--...-++-+ .|+.++|++++..+....-.+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444588888888888888887763 1 1112233445556 7888888888888665556777788877776
Q ss_pred HHH
Q 046803 216 ACA 218 (580)
Q Consensus 216 a~~ 218 (580)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 653
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.61 E-value=0.42 Score=39.76 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=46.4
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-H-HHHHHHHHHHHh--c---
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-P-AVWTAMLGACKM--H--- 390 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~-~~~~~ll~~~~~--~--- 390 (580)
.+.|++++|.+.|+.+..++...| .....-.|+.+|.+.|++++|...+++-+...|+ + .-|...+.++.. .
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~ 100 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG 100 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence 345666666666666655443333 2334444566666666666666666555544432 1 112222222111 1
Q ss_pred ------------CCchHHHHHHHHHHhcCCCC
Q 046803 391 ------------KNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 391 ------------g~~~~a~~~~~~~~~~~p~~ 410 (580)
+....|...|+++++.-|++
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 12456777777777777764
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.59 E-value=0.32 Score=41.35 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
....++..+...|++++|.++.+..+...| |...|..++.++...|+...|.+.|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455677888899999999999988888888 68889999999999999999999999875
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.2 Score=46.25 Aligned_cols=94 Identities=15% Similarity=0.217 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC---CcchHHHHH
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE---NPGHYVMLS 418 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~ 418 (580)
.|+.-++.| +.|++.+|.+.|.+-+..-|+ +..+-=|..++...|+++.|...|..+.+-.|. -|..+..|+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455544433 566677777777655543332 233444667777777777777777777765544 345677777
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 046803 419 NIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 419 ~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
....+.|+.++|..+|+.+.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777654
No 242
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.45 E-value=0.21 Score=40.98 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc---CCCCCHHHHHHHHHHHHh
Q 046803 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI---GEKPAPAVWTAMLGACKM 389 (580)
Q Consensus 339 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~ll~~~~~ 389 (580)
.+.|+..+..+++.+|+..|++..|+++++... ++.-+..+|..|+.-+..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 445667777777777777777777777774333 433346667777665543
No 243
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.40 E-value=1.5 Score=40.22 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=22.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 416 MLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 416 ~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.++..|.+.|.|.-|..-++.|.+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc
Confidence 5778899999999999999999875
No 244
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.40 E-value=3.2 Score=41.19 Aligned_cols=408 Identities=9% Similarity=0.067 Sum_probs=223.8
Q ss_pred HHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCCCCh---hhHHHHHHHHHcCCCccHHHHHHHHHHHCCC
Q 046803 26 QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS---FLFNTLIIRNSKANFSTDSLLFYRRMIVSNI 102 (580)
Q Consensus 26 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 102 (580)
++.+.+... ..|+..|-+||.-+...+.+++-++++++|..|-+ .+|..-|++-....+++....+|.+.+....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 455554432 34788899999888889999999999999988654 4799999988888999999999999887644
Q ss_pred CCChhhHHHHHHHHHccCChHH------HHHHHHHHHH-hCCCC-chHHHHHHHHHHH---------hCCCHHHHHHHHc
Q 046803 103 SPSNYTFSAVIKSCAHLSILNL------GRAVHCHVFV-SGYDS-DLHVQAALVNFYA---------KSNNVDVARKVFD 165 (580)
Q Consensus 103 ~p~~~t~~~ll~a~~~~~~~~~------a~~~~~~~~~-~g~~~-~~~~~~~li~~y~---------~~g~~~~A~~~f~ 165 (580)
. ...|..-+.-..+.+..-. --+.|+.++. .++.| ....|+..++..- ...++|..++.+.
T Consensus 108 ~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 N--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred c--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 4 4455555554444433222 2234444443 23443 3345666555432 2234566677777
Q ss_pred cCCCC---Ch-------hHHHHHHHHHHh---CC----ChhHHHHHHHHHHH--CCCCC----ChhHHHHH---------
Q 046803 166 RMPDK---SV-------VAWNSMISGYEQ---NG----FAKEAIGLFNLMRD--FGVNP----DSTTCVCV--------- 213 (580)
Q Consensus 166 ~~~~~---~~-------~~~~~li~~~~~---~g----~~~~A~~~~~~m~~--~g~~p----~~~t~~~l--------- 213 (580)
++... |. ..|..=+.-... -| -+-.|...+++... .|... +..|++-+
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 76541 11 122111111111 01 13445555555542 23321 22232221
Q ss_pred --HHHHHhCC-----C--hHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CChH--------
Q 046803 214 --LAACAQLG-----D--IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--LNVI-------- 274 (580)
Q Consensus 214 --l~a~~~~~-----~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~-------- 274 (580)
|..=...| + ....--+|++.+.. +.....+|----.-+...++-+.|......-.+ |...
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ye 344 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYE 344 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHh
Confidence 21111100 0 01111223333222 122233333333333455667777776655432 2210
Q ss_pred ----------HHHHHHHHHHh---cCChHHHHHH------HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 275 ----------AWTAMISGYGM---HGYGTEAVEL------FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 275 ----------~~~~li~~~~~---~g~~~~A~~~------~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
+|..++..+.+ .+..+.+... ..+..-....--...|...+++-.+..-++.|+.+|-++.
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 12222222221 1111111110 0111000001122456667777777788899999999987
Q ss_pred HhcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHH-HHHHHHHHhcCCchHHHHHHHHHHhcCCC--Cc
Q 046803 336 QEYG-LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW-TAMLGACKMHKNFDLGVEVAEHLLSVEPE--NP 411 (580)
Q Consensus 336 ~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~ 411 (580)
+. + +.+++..+++++.-++ .|+..-|..+|+-.+..-||...| .-.+.-+...++-+.|..+|+..++.-.. -.
T Consensus 425 k~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k 502 (660)
T COG5107 425 KE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLK 502 (660)
T ss_pred cc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhh
Confidence 65 5 5678888888888664 678888999997777666775543 44555666778888888888865542221 14
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 412 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..|..++.--..-|+...+..+=++|.+.
T Consensus 503 ~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 503 RIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 57777777777888887777776666553
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.45 Score=45.00 Aligned_cols=148 Identities=9% Similarity=-0.027 Sum_probs=63.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH----HHHHHHcCCHH
Q 046803 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM----VDLFGRAGLLN 361 (580)
Q Consensus 286 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~ 361 (580)
.|+..+|-..++++.+. .+.|...+...-.+|...|+...-...++++.. ...|+...|.-+ .-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444444445554442 233444444444455555555555554444442 223333222221 12223455555
Q ss_pred HHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 362 EAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE----NPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 362 ~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
+|++.-++++.++| |.-.-.++.......|+..++.+...+-...-.. -...|-..+-.|...+.++.|.++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 55555555555444 3333344444444555555555444432211000 012233444444444555555555544
No 246
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.32 E-value=0.081 Score=46.03 Aligned_cols=90 Identities=9% Similarity=0.141 Sum_probs=74.9
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCCCCH------HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEKPAP------AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 425 (580)
.-+...|++++|..-|.+++..-|.. ..|..=..+..+.+.++.|+.-..++++++|.+..+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44667899999999998888666542 335555567788999999999999999999998888888899999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 046803 426 RMDRVEVVRNIMIQKG 441 (580)
Q Consensus 426 ~~~~a~~~~~~m~~~~ 441 (580)
++++|.+-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999998754
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.31 E-value=1 Score=45.99 Aligned_cols=157 Identities=12% Similarity=0.103 Sum_probs=100.4
Q ss_pred HHHcCCCccHHHHHHH--HHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 046803 80 RNSKANFSTDSLLFYR--RMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157 (580)
Q Consensus 80 ~~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 157 (580)
...-+++++++.++.+ ++.. .+ +..-...+++-+.+.|..+.|.++ ..|+. .-.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~---------~~D~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQF---------VTDPD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHH---------SS-HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhh---------cCChH---HHhHHHHhcCCH
Confidence 3445678888776665 2221 12 233467777778888888888876 23332 234557789999
Q ss_pred HHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 046803 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237 (580)
Q Consensus 158 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 237 (580)
+.|.++-++.. +...|..|.....++|+++-|.+.|.+..+ |..++-.|.-.|+.+.-.++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99999988765 667999999999999999999999887643 4556666777888888888887777766
Q ss_pred CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhc
Q 046803 238 LDVNVVLATSLINMYARCGNVSKAREIFDMM 268 (580)
Q Consensus 238 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 268 (580)
. +|....++.-.|++++..+++.+.
T Consensus 404 -~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 444445555567777777766543
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=2.4 Score=39.82 Aligned_cols=143 Identities=13% Similarity=0.074 Sum_probs=77.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 046803 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361 (580)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 361 (580)
.....|+..+|..+|+........ +......+..++...|+++.|..++..+..+. -.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCC
Confidence 445566777777777766653211 23444556666777777777777776654321 0011111223344455555444
Q ss_pred HHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCh
Q 046803 362 EAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVE--PENPGHYVMLSNIYALAGRM 427 (580)
Q Consensus 362 ~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~ 427 (580)
+..++- +.....| |...-..|...+...|+.+.|.+.+-.+++.+ -.|...-..|+.++.-.|.-
T Consensus 221 ~~~~l~-~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 221 EIQDLQ-RRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 444444 3334455 45555566666667777777766666655443 33455556666666655533
No 249
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.14 E-value=5.9 Score=42.78 Aligned_cols=79 Identities=18% Similarity=0.067 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCC
Q 046803 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222 (580)
Q Consensus 143 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 222 (580)
.-..-+..+.+.++++...+.+..- ..+...-.....+....|+.++|.+..+.+-..| ...+.....++..+.+.|.
T Consensus 101 Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 3344455566778888888744332 3455555666777888888888877777776555 2234455556666555444
Q ss_pred h
Q 046803 223 I 223 (580)
Q Consensus 223 ~ 223 (580)
+
T Consensus 179 l 179 (644)
T PRK11619 179 Q 179 (644)
T ss_pred C
Confidence 3
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.09 E-value=0.25 Score=45.62 Aligned_cols=91 Identities=19% Similarity=0.199 Sum_probs=42.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHH
Q 046803 285 MHGYGTEAVELFHRMRAHGVRP--NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLN 361 (580)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 361 (580)
+.|++.+|...|...++....- ....+-.|..++...|++++|..+|..+.++++-.|. ++.+--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3444555555555555432110 0112334555555555555555555555554444443 244444445555555555
Q ss_pred HHHHHHHhHcCCCC
Q 046803 362 EAYKFVKDVIGEKP 375 (580)
Q Consensus 362 ~A~~~~~~~~~~~p 375 (580)
+|...|++.+..-|
T Consensus 233 ~A~atl~qv~k~YP 246 (262)
T COG1729 233 EACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHHHCC
Confidence 55555544443334
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.05 E-value=1.7 Score=44.92 Aligned_cols=160 Identities=15% Similarity=0.176 Sum_probs=102.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHH----hcCCHHHHHHHHHHhHHhcCCCCCHHH
Q 046803 277 TAMISGYGMHGYGTEAVELFHRMRAH-GVRPNN-----VTFVAVLSACA----HAGLVQEGHRVFASMRQEYGLLPGVEH 346 (580)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~ 346 (580)
..+++...-.|+-+.+++++.+..+. ++.-.. .+|..++..+. .....+.|.++++.+.+.+ |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 33444444556666666666655442 222111 12333333222 2456788999999998654 65444
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHhHcCCCC-----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH-HH
Q 046803 347 HV-CMVDLFGRAGLLNEAYKFVKDVIGEKP-----APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML-SN 419 (580)
Q Consensus 347 ~~-~li~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~~ 419 (580)
|. --...+...|++++|++.|++++..+. ....+--+...+....++++|...+.++.+.+.-....|..+ +.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 43 345667788999999999976663221 123355566778889999999999999998776555555544 55
Q ss_pred HHHhcCCh-------hHHHHHHHHHHh
Q 046803 420 IYALAGRM-------DRVEVVRNIMIQ 439 (580)
Q Consensus 420 ~y~~~g~~-------~~a~~~~~~m~~ 439 (580)
+|...|+. ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 66788888 888888887754
No 252
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.98 E-value=0.04 Score=33.20 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777777777777777777777777775
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=1.8 Score=40.60 Aligned_cols=121 Identities=11% Similarity=0.077 Sum_probs=88.7
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHH---HHHHHHhcCCc
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA---MLGACKMHKNF 393 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~ 393 (580)
.....|+..+|...|...... .+-+...--.|+..|...|+.++|..++ ..++.+-...-|.. -+....+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL-~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAIL-AALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHH-HhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 456789999999999988753 2224556667899999999999999999 88766543333333 23334444444
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 394 DLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 394 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
.+... +++-...+|+|...-..|+..|...|+.++|.+.+-.+.+++
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44333 334445789999999999999999999999999988887654
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.89 E-value=0.06 Score=32.28 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777777777777777777777777764
No 255
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.87 E-value=4.6 Score=40.14 Aligned_cols=133 Identities=13% Similarity=0.123 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHH
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV-EHHVCMV 351 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li 351 (580)
..|...++.-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+...|..+|+.-...+ ||. ..-.-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHH
Confidence 467778888778888899999999999988 6778888888887654 688999999998876543 443 3334567
Q ss_pred HHHHHcCCHHHHHHHHHhHcC-CCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 352 DLFGRAGLLNEAYKFVKDVIG-EKPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
..+.+.++-+.|..+|+..++ +..+ ..+|..++.--...|+...+..+-+++.+.-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 778899999999999976663 2222 4678888888889999999988888888887763
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.86 E-value=0.07 Score=34.48 Aligned_cols=39 Identities=21% Similarity=0.521 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHH
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAML 384 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll 384 (580)
.+..+...|.+.|++++|.++|++.+...|+ +..|..|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4566778888888888888888777777774 66666554
No 257
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.85 E-value=3.1 Score=41.30 Aligned_cols=151 Identities=7% Similarity=-0.074 Sum_probs=81.1
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh-cCCCCCHHH
Q 046803 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP---NNVTFVAVLSACAHAGLVQEGHRVFASMRQE-YGLLPGVEH 346 (580)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~ 346 (580)
....+|..++....+.|+++.|...+.++...+..+ +......-....-..|+..+|...++..... .....+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 445678888888888888888888888877643211 2233334455566678888888887777651 111111111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc------CCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH------KNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
...+...+.. ..+.....-........-..++..+..-+... ++.+++...|.++.+..|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000000000000123344444444444 788899999999999999887777777776
Q ss_pred HHh
Q 046803 421 YAL 423 (580)
Q Consensus 421 y~~ 423 (580)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 654
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.83 E-value=5.6 Score=44.48 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCC--CccHHHHHHHHHHH
Q 046803 74 FNTLIIRNSKAN--FSTDSLLFYRRMIV 99 (580)
Q Consensus 74 ~~~li~~~~~~g--~~~~A~~~~~~m~~ 99 (580)
.-.+|..|++.+ ..++|+....+...
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 345667777776 55666666666553
No 259
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.70 E-value=0.24 Score=45.61 Aligned_cols=100 Identities=12% Similarity=0.048 Sum_probs=73.8
Q ss_pred hHHHHHHccCC--CCChhhHHHHHHHHHcC-----CCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC--------
Q 046803 57 TYAQRIFFCIP--SPDSFLFNTLIIRNSKA-----NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI-------- 121 (580)
Q Consensus 57 ~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-------- 121 (580)
-..++.|...+ ++|-.+|-+++..+... +..+-....++.|.+-|+.-|..+|+.||..+-+-.-
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34566777777 68889999998887654 5566666778889999999999999999988755321
Q ss_pred --------hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Q 046803 122 --------LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156 (580)
Q Consensus 122 --------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 156 (580)
-+-+..++++|...|+.||..+-..|++++++.+-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 22366677777777777777777777777766654
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=0.38 Score=45.44 Aligned_cols=116 Identities=9% Similarity=-0.005 Sum_probs=94.4
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC-CCCHHHHH----HHHHHHHhcCCch
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE-KPAPAVWT----AMLGACKMHKNFD 394 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~----~ll~~~~~~g~~~ 394 (580)
..|+..+|-..++++.++ .+.|...+.-.-+++.-.|+.+.-...+++.++. .||...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457788888888998874 4456777777778889999999999999888876 67754433 3444556889999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 395 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
+|++..+++++++|.|.-+...++.++...|+..++.+...+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999999999999999999999999999887654
No 261
>PRK15331 chaperone protein SicA; Provisional
Probab=94.50 E-value=0.37 Score=41.04 Aligned_cols=84 Identities=12% Similarity=0.042 Sum_probs=33.7
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHH
Q 046803 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262 (580)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 262 (580)
-+.|++++|..+|+-+...+ .-|..-+..|..++-..+.+++|...|......+ ..|+...--...+|...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 34444555555444444321 1122223333333333444444444444444332 122222333344444444444444
Q ss_pred HHHHhc
Q 046803 263 EIFDMM 268 (580)
Q Consensus 263 ~~~~~~ 268 (580)
..|...
T Consensus 126 ~~f~~a 131 (165)
T PRK15331 126 QCFELV 131 (165)
T ss_pred HHHHHH
Confidence 444433
No 262
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.49 E-value=15 Score=44.47 Aligned_cols=310 Identities=11% Similarity=0.072 Sum_probs=170.9
Q ss_pred HHHHHccCChHHHHHHHHHH----HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHc-cCCCCChhHHHHHHHHHHhCCC
Q 046803 113 IKSCAHLSILNLGRAVHCHV----FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD-RMPDKSVVAWNSMISGYEQNGF 187 (580)
Q Consensus 113 l~a~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~-~~~~~~~~~~~~li~~~~~~g~ 187 (580)
..+--+.+.+..|...++.- .+. ......+-.+...|+.-+++|...-+.. ....++. ..-|......|+
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 33444566677776666652 111 1123344555668888888888777766 3433332 234555667899
Q ss_pred hhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHH-hhHhhhcCCHHHHHHHH
Q 046803 188 AKEAIGLFNLMRDFGVNPD-STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL-INMYARCGNVSKAREIF 265 (580)
Q Consensus 188 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~y~~~g~~~~A~~~~ 265 (580)
+..|..-|+++.+. .|+ ..+++.++......+.++......+-.... ..+....++++ +.+--+.++++......
T Consensus 1465 ~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999999875 344 667888887777777777766644444333 23444444333 34445667777666655
Q ss_pred HhccCCChHHHHHH--HHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------
Q 046803 266 DMMSELNVIAWTAM--ISGYGMHG--YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-------- 333 (580)
Q Consensus 266 ~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~-------- 333 (580)
. ..+..+|.+. +..+.+.. +.-.-.++.+.+.+.-+.| +.+|+..|.+..+.++.-+
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 5 4555666554 22222221 1111112333332211111 1122222222122111111
Q ss_pred --hHHhcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHhHc---CCCCC-----HHHHHHHHHHHHhcCCchHHH
Q 046803 334 --MRQEYGLLPGV------EHHVCMVDLFGRAGLLNEAYKFVKDVI---GEKPA-----PAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 334 --~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~p~-----~~~~~~ll~~~~~~g~~~~a~ 397 (580)
.....+..++. ..|..-+..=....+..+-+--+++.+ ..+|+ ..+|......++..|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 11111233321 122222221111122222222222222 22332 567999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 398 EVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 398 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
...-.+.+..+ +..+...+......|+...|..+++...+....
T Consensus 1691 nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 99888887774 578999999999999999999999998876543
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.49 E-value=2 Score=43.27 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPE--NPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 381 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
..|...+.+.|+.++|++.++++++..|. +......|++.+...+++.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555666667777777777777665543 344566677777777777777777666543
No 264
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.45 E-value=5.9 Score=39.52 Aligned_cols=117 Identities=17% Similarity=0.190 Sum_probs=76.4
Q ss_pred HHhcCC-hHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhc---CCHHHHHHHHHHhHHhcCCCC----CHHHHHH
Q 046803 283 YGMHGY-GTEAVELFHRMRAHGVRPNNV-----TFVAVLSACAHA---GLVQEGHRVFASMRQEYGLLP----GVEHHVC 349 (580)
Q Consensus 283 ~~~~g~-~~~A~~~~~~m~~~g~~pd~~-----t~~~ll~a~~~~---g~~~~a~~~~~~~~~~~~~~p----~~~~~~~ 349 (580)
+-+.|. -++|+++++...+ +.|... ++..+=.+|.+. ..+.+-..+-+- ..+-|+.| +....|.
T Consensus 389 lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~f-i~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDF-ITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHhcCCCcccccHHHHHHH
Confidence 334555 7889999998877 333322 233333344332 223333333333 34558877 3556777
Q ss_pred HHHH--HHHcCCHHHHHHHHHhHc-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 350 MVDL--FGRAGLLNEAYKFVKDVI-GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 350 li~~--~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
|.++ +...|++.++.-.- ..+ .+.|++.+|..+.-....+.++++|...+..+
T Consensus 466 LaDAEyLysqgey~kc~~ys-~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYS-SWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 7765 56789999987665 443 78899999999998889999999999887754
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.32 E-value=2 Score=41.25 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=27.2
Q ss_pred hCCCHHHHHHHHccCCCC------ChhHHHHHHHHHHhCCChhHHHHH
Q 046803 153 KSNNVDVARKVFDRMPDK------SVVAWNSMISGYEQNGFAKEAIGL 194 (580)
Q Consensus 153 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 194 (580)
...+.+.|+..+.+...+ -..++..+..+..+.|.+++++..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 456677777776655442 124566677777888888777654
No 266
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.30 E-value=0.47 Score=38.35 Aligned_cols=91 Identities=12% Similarity=-0.049 Sum_probs=62.6
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-----HHHHHHHHHHHHhcC
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-----PAVWTAMLGACKMHK 391 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g 391 (580)
+.+..|+++.|.+.|.+... -.+-....||.-..++.-+|+.++|++=+++++...-+ -..|..=...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45667888888888877763 22235777888888888888888888877777643221 122444455678888
Q ss_pred CchHHHHHHHHHHhcCCC
Q 046803 392 NFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 392 ~~~~a~~~~~~~~~~~p~ 409 (580)
+.+.|..-|+.+-+++..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888888777754
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.23 E-value=1.8 Score=44.81 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 046803 288 YGTEAVELFHRMRAHGVRPNNVTFVAVL-SACAHAGLVQEGHRVFASMRQEYGLLPG--VEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 288 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 364 (580)
..+.|.++++.+.+ .-|+...|...- ..+...|++++|.+.|+.......--+. ...+--+.-.+.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 45566666666665 245555444332 2455566666666666654321011111 222333444556667777777
Q ss_pred HHHHhHcCCCC-CHHHHHHHHHHH-HhcCCc-------hHHHHHHHHHHh
Q 046803 365 KFVKDVIGEKP-APAVWTAMLGAC-KMHKNF-------DLGVEVAEHLLS 405 (580)
Q Consensus 365 ~~~~~~~~~~p-~~~~~~~ll~~~-~~~g~~-------~~a~~~~~~~~~ 405 (580)
+.|.+...... +..+|..+..+| ...|+. ++|.++++++-.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 77755444332 233444333333 345555 666666666543
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.19 E-value=4.8 Score=40.74 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=31.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 279 MISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
+..+.-+.|+.++|++.|++|.+....- +....-.|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4445556666666666666666532111 1224445666666666666666666554
No 269
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.13 E-value=3 Score=34.96 Aligned_cols=44 Identities=20% Similarity=0.104 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhc
Q 046803 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255 (580)
Q Consensus 211 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 255 (580)
..++..+...+.......+++.+.+.+ +.+....|.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 345555555566666666666666665 35556666666666654
No 270
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.05 E-value=0.42 Score=44.07 Aligned_cols=99 Identities=13% Similarity=0.188 Sum_probs=75.7
Q ss_pred HHHHHHccCC--CCChhHHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC----------
Q 046803 159 VARKVFDRMP--DKSVVAWNSMISGYEQN-----GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG---------- 221 (580)
Q Consensus 159 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---------- 221 (580)
..++.|...+ ++|..+|-+++..+... +..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677666 57888888888877654 556667777888999999999999999998875432
Q ss_pred ------ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCC
Q 046803 222 ------DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257 (580)
Q Consensus 222 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 257 (580)
.-+-+..++++|...|+.||..+-..|++++++.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224567788888888888888888888888877664
No 271
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.92 E-value=1.9 Score=43.99 Aligned_cols=129 Identities=13% Similarity=0.077 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCC
Q 046803 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288 (580)
Q Consensus 209 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (580)
-...++.-+.+.|..+.|.++-..-. .-.+...++|+++.|.++-++.. +...|..|......+|+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence 34555555556666666655532211 12234456677777766654443 45567777777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046803 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367 (580)
Q Consensus 289 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 367 (580)
.+-|.+.|++..+ |..|+-.|.-.|+.+.-.++.+..... | -++....++.-.|++++..+++
T Consensus 363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777766542 334555555666665555555444321 1 1222333333445666555555
No 272
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.80 E-value=0.11 Score=48.90 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=80.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHK 391 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g 391 (580)
-.+-|.++|.+++|+..|.... .+.| +..++..-..+|.+..++..|..=...++..... ...|+-=+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556888999999999998766 4556 7888888888999999999888877666654321 334555566666778
Q ss_pred CchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 046803 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 392 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 431 (580)
+..+|.+-++.+++++|++.. |-..|.+.....++.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 899999999999999998543 334444444444443
No 273
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.68 E-value=3.7 Score=34.42 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=24.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Q 046803 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154 (580)
Q Consensus 111 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 154 (580)
.++..+...+.......+++.+++.+ ..+....|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44555555555666666666666555 24555666666666654
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=4.9 Score=36.64 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046803 276 WTAMISGYGMHGYGTEAVELFHRMRAHG---VRPNNVTFVAVLSACAHAGLVQEGHRVF 331 (580)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 331 (580)
|-+.|-.|....++..|...++.--+.+ -.-|..+...||.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3334444455556666666666533311 112334566666655 346666655554
No 275
>PRK09687 putative lyase; Provisional
Probab=93.30 E-value=7.8 Score=37.00 Aligned_cols=237 Identities=9% Similarity=0.013 Sum_probs=112.4
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCChhHHHHH
Q 046803 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA----KEAIGLFNLMRDFGVNPDSTTCVCV 213 (580)
Q Consensus 138 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 213 (580)
.+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+... .||...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 344444444555555555433333333323344555555555556666653 3566666655332 3455555555
Q ss_pred HHHHHhCCChHH--HHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcC-ChH
Q 046803 214 LAACAQLGDIDL--GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG-YGT 290 (580)
Q Consensus 214 l~a~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 290 (580)
+.++...+.... .......+...-..++..+-...+.++++.|+.+....+...+..+|...-..-+.++.+.+ ...
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 555544432110 11122222221123355555566666666666433333333333455444444444454432 234
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhH
Q 046803 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370 (580)
Q Consensus 291 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 370 (580)
.+...+..+.. .+|...-...+.++.+.|+. .+...+-...+. ++ .....+.+++..|.. +|...+.+.
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 55555555553 34555555566666666663 344333333321 22 123456666666664 566666555
Q ss_pred cCCCCCHHHHHHHHHHH
Q 046803 371 IGEKPAPAVWTAMLGAC 387 (580)
Q Consensus 371 ~~~~p~~~~~~~ll~~~ 387 (580)
+...||..+-...+.+|
T Consensus 261 ~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 261 LYKFDDNEIITKAIDKL 277 (280)
T ss_pred HhhCCChhHHHHHHHHH
Confidence 55555655544444444
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.71 E-value=9.9 Score=37.65 Aligned_cols=66 Identities=12% Similarity=0.255 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP----ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 376 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
...+|..+...+++.|.++.|...+.++.+.++ ..+.....-+......|+..+|...++...+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999988652 246677778899999999999999998887733
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.63 E-value=9.8 Score=36.36 Aligned_cols=60 Identities=7% Similarity=-0.055 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCChH---HHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 209 TCVCVLAACAQLGDID---LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 209 t~~~ll~a~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
++..++.++...+..+ +|..+.+.+.... +..+.++-.-+..+.+.++.+++.+++.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 3444445554444333 3334444443221 2223333333444444555555555555554
No 278
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.13 E-value=9.7 Score=35.16 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPG---HYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+..-|.+.|.+..|..-++++++.-|+.+. .+..|.++|...|-.++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 4456688999999999999999987766544 455677889999999999988776654
No 279
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=20 Score=38.42 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q 046803 176 NSMISGYEQNGFAKEAIGLFNLMR 199 (580)
Q Consensus 176 ~~li~~~~~~g~~~~A~~~~~~m~ 199 (580)
..|+..|...+++..|+.++-..+
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhcc
Confidence 347788888888888888877665
No 280
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.83 E-value=0.26 Score=29.42 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 046803 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 379 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 408 (580)
+|..+...+...|++++|...|++.++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666666655
No 281
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.80 E-value=0.12 Score=31.11 Aligned_cols=29 Identities=7% Similarity=0.240 Sum_probs=17.1
Q ss_pred hHcCCCC-CHHHHHHHHHHHHhcCCchHHH
Q 046803 369 DVIGEKP-APAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 369 ~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
+++...| ++..|..|...+...|++++|+
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4444555 3566666666666666666654
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.56 E-value=0.38 Score=29.39 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 413 HYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888888888888888744
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.45 E-value=0.27 Score=30.01 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
|..|...|...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666777777777777777644
No 284
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.24 E-value=11 Score=34.15 Aligned_cols=91 Identities=7% Similarity=0.076 Sum_probs=45.3
Q ss_pred HHHHHHHHc-CCHHHHHHHHHhHc----CCCCCHHHHHHHHH---HHHhcCCchHHHHHHHHHHhcCCCCcchH------
Q 046803 349 CMVDLFGRA-GLLNEAYKFVKDVI----GEKPAPAVWTAMLG---ACKMHKNFDLGVEVAEHLLSVEPENPGHY------ 414 (580)
Q Consensus 349 ~li~~~~~~-g~~~~A~~~~~~~~----~~~p~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~p~~~~~~------ 414 (580)
.+...|-.. .++++|+..|+++- +.+.+...-..++. --...+++.+|+.+|+++.....+|+..-
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344444433 56666666664443 11112222222222 23566889999999999876555443221
Q ss_pred HHHHH-HHHhcCChhHHHHHHHHHHh
Q 046803 415 VMLSN-IYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 415 ~~l~~-~y~~~g~~~~a~~~~~~m~~ 439 (580)
..-+. ++.-.++.-.+...+++-.+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 11122 22223555555555555544
No 285
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.08 E-value=13 Score=34.47 Aligned_cols=211 Identities=16% Similarity=0.229 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHC---CC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCcHH
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDF---GV--NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-----GLDVNVV 243 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 243 (580)
+...+|..+.+.|++++.++.|.+|..- .+ .-+..+.+++++-.+...+.+.-...++--++. +-...-.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3445566667777777777776666421 11 123345666666655555555444444332221 1111223
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccC--------CC-------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSE--------LN-------VIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPN 307 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd 307 (580)
+-+-|...|...|++.+-.++++++.+ .| ...|..=|..|..+.+-.+...+|++...-. .-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 345677778888888887777776652 11 2456667788888888888888888776422 2333
Q ss_pred HHHHHHHHHHHH-----hcCCHHHHHHHHHHhHHhcCC--CCC---HHHHHHHHHHHHHcCC--HHHHHHHHHhHcCCC-
Q 046803 308 NVTFVAVLSACA-----HAGLVQEGHRVFASMRQEYGL--LPG---VEHHVCMVDLFGRAGL--LNEAYKFVKDVIGEK- 374 (580)
Q Consensus 308 ~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~p~---~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~- 374 (580)
.. ...++.-|. +.|.+++|..-|-++-+.+.- .|. .--|-.|..++.+.|- ++. +++-|.+
T Consensus 227 Pl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDs-----QEAKPyKN 300 (440)
T KOG1464|consen 227 PL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDS-----QEAKPYKN 300 (440)
T ss_pred hH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcc-----cccCCCCC
Confidence 33 334555453 567888876555444443322 222 2335566667666552 111 0222333
Q ss_pred -CCHHHHHHHHHHHHhc
Q 046803 375 -PAPAVWTAMLGACKMH 390 (580)
Q Consensus 375 -p~~~~~~~ll~~~~~~ 390 (580)
|.......|+.+|..+
T Consensus 301 dPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQNN 317 (440)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 4455677888888654
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.06 E-value=1.1 Score=42.19 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+..++..+...|+++.+...+++++..+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555555555555555555443
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.01 E-value=0.32 Score=29.08 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
..|..+...|...|++++|++.|++++.+.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777666654
No 288
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.98 E-value=7.7 Score=31.75 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 238 (580)
..+.-+.....+|+-++-.+++..+.+. -.+++....-+..||.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445567777888888888888777653 367777888888888888888888888888887774
No 289
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.82 E-value=0.48 Score=41.98 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=48.3
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchH
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~ 395 (580)
|-..|.+.-|+--|.... .+.|+ +.+||-|.--+...|+++.|.+.|+..+...|. ..+...=.-++---|+++.
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 445555555655555443 44554 455555555566666666666666555555553 2222111222334456666
Q ss_pred HHHHHHHHHhcCCCCc
Q 046803 396 GVEVAEHLLSVEPENP 411 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~ 411 (580)
|.+-+-+.-+.+|+||
T Consensus 152 Aq~d~~~fYQ~D~~DP 167 (297)
T COG4785 152 AQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHHHHHHHHhcCCCCh
Confidence 6666666666666654
No 290
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.80 E-value=0.92 Score=43.09 Aligned_cols=95 Identities=18% Similarity=0.032 Sum_probs=69.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 358 (580)
.+-|.++|.+++|+..|..-+. +.| |.+++..-..+|.+...+..|+.-......- -..-+..|+.-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 4569999999999999998776 566 8899999999999999998887766655421 0111344444444445567
Q ss_pred CHHHHHHHHHhHcCCCCCHH
Q 046803 359 LLNEAYKFVKDVIGEKPAPA 378 (580)
Q Consensus 359 ~~~~A~~~~~~~~~~~p~~~ 378 (580)
.+.+|.+=++..+..+|+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH
Confidence 78888888877778888743
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.59 E-value=35 Score=38.65 Aligned_cols=85 Identities=18% Similarity=0.103 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 046803 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355 (580)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 355 (580)
|.+....+.+.+.+++|.-.|+..-+ ..-.+.+|-..|+|.+|..+..++.. +-.--..+...|+.-+.
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHH
Confidence 33344444455666666666654322 11245667777788887777766532 11111333356777777
Q ss_pred HcCCHHHHHHHHHhHc
Q 046803 356 RAGLLNEAYKFVKDVI 371 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~ 371 (580)
..++.-+|-++..+..
T Consensus 1011 e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HcccchhHHHHHHHHh
Confidence 7777777777774444
No 292
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.43 E-value=29 Score=37.51 Aligned_cols=164 Identities=9% Similarity=0.008 Sum_probs=79.5
Q ss_pred ChhhHHHHHHHHH-cCCCccHHHHHHHHHHHCCCCCChh----h-HHHHHHHHHccCChHHHHHHHHHHHHhCC----CC
Q 046803 70 DSFLFNTLIIRNS-KANFSTDSLLFYRRMIVSNISPSNY----T-FSAVIKSCAHLSILNLGRAVHCHVFVSGY----DS 139 (580)
Q Consensus 70 ~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~----t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~----~~ 139 (580)
+..++-.+...+. ...+++.|...+.+.....-+++-. . -..++..+.+.+... |.+..+..++.-- .+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3444555555554 5566777777777664432222221 1 112233344444333 7777766655321 12
Q ss_pred chHHHHHH-HHHHHhCCCHHHHHHHHccCCC-----CC--hhHHHHHHHHH--HhCCChhHHHHHHHHHHHCCC------
Q 046803 140 DLHVQAAL-VNFYAKSNNVDVARKVFDRMPD-----KS--VVAWNSMISGY--EQNGFAKEAIGLFNLMRDFGV------ 203 (580)
Q Consensus 140 ~~~~~~~l-i~~y~~~g~~~~A~~~f~~~~~-----~~--~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~------ 203 (580)
-...+.-+ +..+...++...|.+.++.+.. .| +...-.++.+. .+.+..+++++.++++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 22333333 3333334677777777766542 12 22222333332 234556666666666633211
Q ss_pred ---CCChhHHHHHHHHHH--hCCChHHHHHHHHHHH
Q 046803 204 ---NPDSTTCVCVLAACA--QLGDIDLGRWVHEFIV 234 (580)
Q Consensus 204 ---~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~ 234 (580)
.|-..+|..+++.++ ..|++..+.+.++++.
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233445666666554 4456556666555544
No 293
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.08 E-value=1.3 Score=41.65 Aligned_cols=61 Identities=8% Similarity=0.150 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
.++..++..+...|+++.+.+.+++.+...| +...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4566788999999999999999988888888 789999999999999999999999999876
No 294
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.62 E-value=8.2 Score=31.70 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHh-cCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 374 KPAPAVWTAMLGACKMH---KNFDLGVEVAEHLLS-VEPEN-PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 374 ~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+...+--.+..+..+. .+..+++.+++.+.+ -.|.. ......|+-++.+.++++.+.++.+.+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444445555443 356677788888876 33443 33445677788888888888888887766
No 295
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.55 E-value=8.7 Score=36.96 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 046803 290 TEAVELFHRMRAHGVRPNNV--TFVAVLSACAHAGL--VQEGHRVFASMRQEYGLLPGVEHHVCMV 351 (580)
Q Consensus 290 ~~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li 351 (580)
+.+..+|+.+.+.|+..+.. ....++..+..... ...+.++++.+.+. ++++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 45666777777766655432 33333333322222 34677777777654 8887777776554
No 296
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.40 E-value=7.3 Score=37.48 Aligned_cols=124 Identities=8% Similarity=0.084 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHh--C----CCHHHHHHHHccCCC-------CChhHHHHHHHHHHhCCC---
Q 046803 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAK--S----NNVDVARKVFDRMPD-------KSVVAWNSMISGYEQNGF--- 187 (580)
Q Consensus 124 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~----g~~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~--- 187 (580)
+...+++.+.+.|+..+..++-+..-.... . -....|..+|+.|.+ ++-.++.+|+.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 345566666666666555544432222222 1 123455666666654 233344444433 2222
Q ss_pred -hhHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhC-CC--hHHHHHHHHHHHHcCCCCcHHHhhHHh
Q 046803 188 -AKEAIGLFNLMRDFGVNPDST-TCVCVLAACAQL-GD--IDLGRWVHEFIVGQGLDVNVVLATSLI 249 (580)
Q Consensus 188 -~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~-~~--~~~a~~~~~~~~~~~~~~~~~~~~~li 249 (580)
.+.+...|+.+.+.|+..+.. -+.+-+-++... .. ..++..+++.+.+.|++.....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 245566777777766665433 233333233222 22 346667777777777776666665443
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.33 E-value=8.4 Score=39.85 Aligned_cols=150 Identities=13% Similarity=-0.006 Sum_probs=102.7
Q ss_pred hcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046803 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333 (580)
Q Consensus 254 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 333 (580)
-.|+++.|..++-.++++ .-+.++.-+-.+|..++|+++ .||..-- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 346777777766666532 334455556667777777653 3333221 1223467899999887655
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 334 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
. .+..-|..|.++....|++..|.+.|.++.. |..|+-.+...|+.+.-..+.....+.+..|.
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 4 3456788999999999999999999965543 66788888888888877777777776665542
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 046803 414 YVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 414 ~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
-..+|...|+++++.+++.+-
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHhc
Confidence 335678899999999887653
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.25 E-value=0.55 Score=27.92 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
.+..+...|...|++++|++.|++.+...|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555677777777777777777776655553
No 299
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.24 E-value=5 Score=34.51 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=8.9
Q ss_pred HHhhHhhhcCCHHHHHHHHHhc
Q 046803 247 SLINMYARCGNVSKAREIFDMM 268 (580)
Q Consensus 247 ~li~~y~~~g~~~~A~~~~~~~ 268 (580)
+|.-+-.|.|++.+|.+.|..+
T Consensus 172 ALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHhHHHHhccchHHHHHHHHHH
Confidence 3333333444444444444433
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.99 E-value=14 Score=31.63 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=46.7
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHH
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 396 (580)
-...++.+++..++..+. -+.|. ...-..-.-.+.+.|++.+|..++++.....|....-..|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 345667777777777764 34453 22222233445577778888877755444444444445555555444333333
Q ss_pred HHHHHHHHhcCC
Q 046803 397 VEVAEHLLSVEP 408 (580)
Q Consensus 397 ~~~~~~~~~~~p 408 (580)
.....++++.++
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 333444554444
No 301
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.93 E-value=4.3 Score=31.41 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 290 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
-+..+-+..+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 3566667777777889999999999999999999999999999998765533 336666654
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.69 E-value=5.5 Score=35.13 Aligned_cols=93 Identities=10% Similarity=0.049 Sum_probs=57.1
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCc
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPG---VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNF 393 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~ 393 (580)
+...|++++|..-|..+..-..-.+. ...|..-.-++.+.+.++.|++-..+++.+.|. .....-=..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 34456666666666555532111111 233444445666777778887777777777764 22233334567777888
Q ss_pred hHHHHHHHHHHhcCCCC
Q 046803 394 DLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 394 ~~a~~~~~~~~~~~p~~ 410 (580)
++|+.-|+++++.+|..
T Consensus 185 eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHHhCcch
Confidence 99999999999888874
No 303
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.47 E-value=5.5 Score=35.04 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHhCCChHHHHHHHHHHH
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS--TTCVCVLAACAQLGDIDLGRWVHEFIV 234 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~ 234 (580)
.+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...+++..+.....++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444455555555555555555555443322222 133444444455555555554444433
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.24 E-value=4.9 Score=30.76 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 288 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+..+.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44567777777777888999999999999999999999999999988754443 4446665554
No 305
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.14 E-value=3.5 Score=27.80 Aligned_cols=51 Identities=8% Similarity=0.141 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 046803 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 489 (580)
....++.++.+.|++++|.+..+.+.+. .|...++.+.-..+.+.|.+.|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3567888999999999999999999873 46667777777777778887774
No 306
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.93 E-value=4.3 Score=35.24 Aligned_cols=78 Identities=13% Similarity=0.182 Sum_probs=46.2
Q ss_pred HHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC-----------CchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 046803 360 LNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHK-----------NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427 (580)
Q Consensus 360 ~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 427 (580)
+++|+.-|++++.++|+ ..++..+..++..++ .+++|...|+++.+.+|+| ..|..-+.+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA------ 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH------
Confidence 34555555556667776 456666666665443 2567777788888899986 4555544444
Q ss_pred hHHHHHHHHHHhCCCcc
Q 046803 428 DRVEVVRNIMIQKGLKK 444 (580)
Q Consensus 428 ~~a~~~~~~m~~~~~~~ 444 (580)
+.|-++..++.+.+...
T Consensus 124 ~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 124 AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HTHHHHHHHHHHSSS--
T ss_pred HhhHHHHHHHHHHHhhh
Confidence 35777788777766543
No 307
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.85 E-value=17 Score=31.42 Aligned_cols=132 Identities=16% Similarity=0.125 Sum_probs=74.8
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHH-HHHHHHHHHhC-CCHHHHHHHHccCCC
Q 046803 92 LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV-QAALVNFYAKS-NNVDVARKVFDRMPD 169 (580)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~-g~~~~A~~~f~~~~~ 169 (580)
+..+.+.+.++.|+...+..++..+.+.|.+..-.+ ++..++-+|... ...|++.-.+. .-.+-|..++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 445555667788888888888888888877654433 344554444433 33333221111 11334445555443
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 046803 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235 (580)
Q Consensus 170 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 235 (580)
..+..++..+...|++-+|+++.++.... +...-..++.+..+.++...=-.++....+
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24566777888888888888887765321 222334456666666666555555555544
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.47 E-value=10 Score=33.35 Aligned_cols=95 Identities=14% Similarity=0.063 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC------HHH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN--VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG------VEH 346 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~ 346 (580)
.+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...+++..+.....++........+ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4445555666666666666666666554434333 23445555566666666666655555432111111 223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
|..|. +...+++.+|-+.|-+..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 33332 234678888877775544
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.98 E-value=2.8 Score=35.67 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=39.1
Q ss_pred HHcCCHHHHHHHHHhHc-CCCCCHHHH-HHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 355 GRAGLLNEAYKFVKDVI-GEKPAPAVW-TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 355 ~~~g~~~~A~~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
.+.++.+++..++ ..+ -.+|..... ..-...+...|++.+|+.+++.+.+..|..+..-..++.++...|+
T Consensus 21 l~~~~~~D~e~lL-~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALL-DALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHH-HHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 3556777777777 443 344542221 1223345566777777777777666666655544455555544444
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.94 E-value=23 Score=38.32 Aligned_cols=178 Identities=11% Similarity=0.069 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc--HHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhc
Q 046803 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN--VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286 (580)
Q Consensus 209 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 286 (580)
+....++...+...++-|..+-+ ..+.+++ ........+-+.+.|++++|...|-+...--.. ...|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 34455566666666666655432 3333332 122333444556678888888777654421111 1245555555
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHH
Q 046803 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL-PGVEHHVCMVDLFGRAGLLNEAYK 365 (580)
Q Consensus 287 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~ 365 (580)
....+-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+.-. + |.. -|. ...+..+.+.+-+++|.-
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd~---e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFDV---ETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeeeH---HHHHHHHHHhChHHHHHH
Confidence 5666667777777777765 33444567788888888877766655432 1 211 122 234566666777777766
Q ss_pred HHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 366 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
+- ...+. +......+ +-..+++++|.+.++.+
T Consensus 485 LA-~k~~~--he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LA-TKFKK--HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HH-HHhcc--CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 66 32222 23333333 34457788877776543
No 311
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.77 E-value=13 Score=28.78 Aligned_cols=87 Identities=13% Similarity=0.158 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 046803 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201 (580)
Q Consensus 122 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 201 (580)
.++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|... +.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 44555555555443311 222322334557788999999999999988999999887654 667777777777777776
Q ss_pred CCCCChhHHHH
Q 046803 202 GVNPDSTTCVC 212 (580)
Q Consensus 202 g~~p~~~t~~~ 212 (580)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 455555543
No 312
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.71 E-value=5.4 Score=37.74 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=69.1
Q ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC-C--------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046803 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-K--------SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205 (580)
Q Consensus 135 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (580)
.|.+....+...++..-....+++++...+-++.. + ...+|--++. .-++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 34444555556666666666778888777665543 1 2233333332 335778888888888889999
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 046803 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237 (580)
Q Consensus 206 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 237 (580)
|.+++..+|+.+.+.+++..|.++...++...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999988888887777654
No 313
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.22 E-value=21 Score=30.87 Aligned_cols=121 Identities=12% Similarity=0.139 Sum_probs=57.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHH-HHHHH--HHHHHHcC
Q 046803 283 YGMHGYGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE-HHVCM--VDLFGRAG 358 (580)
Q Consensus 283 ~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g 358 (580)
+++.+..++|+.-|.++.+.|...-.+ .-..........|+...|...|+++-.+ .-.|.+. -...| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 456677777777777777755442211 1112233455667777777777776543 2222211 11111 12234555
Q ss_pred CHHHHHHHHHhHcCC--CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046803 359 LLNEAYKFVKDVIGE--KPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 359 ~~~~A~~~~~~~~~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
.+++...-. +.+.. .|- ...-..|.-+-.+.|++..|...|.++..
T Consensus 147 sy~dV~srv-epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRV-EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHh-hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666555555 33311 111 12223444444455555555555555443
No 314
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.92 E-value=1.9 Score=37.36 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC----hhHHHHHHHHHH
Q 046803 393 FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR----MDRVEVVRNIMI 438 (580)
Q Consensus 393 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~----~~~a~~~~~~m~ 438 (580)
+++|+.-|++++.++|+...++..++++|...+. ..+|...|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4677788888899999999999999999987654 445555555543
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.83 E-value=15 Score=38.10 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 046803 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233 (580)
Q Consensus 154 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 233 (580)
.|+++.|..++..+++ ..-+.++..+-++|..++|+++ .+|+..-- ....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHHhh
Confidence 4556666555555542 2334445555556666655543 22222111 1123445555555544332
Q ss_pred HHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 234 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
.+..-|..|.++..+.|++..|.+.|.... -|..|+-.+...|+.+....+-....+
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 233445555555555555555555555432 234444444444544433333333333
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.71 E-value=9.7 Score=36.10 Aligned_cols=98 Identities=12% Similarity=0.227 Sum_probs=73.2
Q ss_pred cCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-C--------ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 046803 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-L--------NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306 (580)
Q Consensus 236 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 306 (580)
.|.+....+...++..-....+++++...+-++.. + ...+|-.++. .-++++++.++..=++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 35566666667777777777888888888777653 2 2233333332 346778999988888999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 307 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
|..++..++..+.+.++..+|.++...|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998887777643
No 317
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.68 E-value=0.57 Score=44.59 Aligned_cols=89 Identities=10% Similarity=0.178 Sum_probs=63.0
Q ss_pred HcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 046803 356 RAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 434 (580)
..|.+++|++.|..+++..|. ...|.-=.+++.+.+....|++-+..+++++|+...-|-.-..+....|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 356677777777677766664 4445555566777777777777777777777777777777777777777777777777
Q ss_pred HHHHhCCCcc
Q 046803 435 NIMIQKGLKK 444 (580)
Q Consensus 435 ~~m~~~~~~~ 444 (580)
....+.+...
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 7777766554
No 318
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=85.64 E-value=1.9 Score=43.10 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=69.7
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCCCCHHHHH-HHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWT-AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 430 (580)
+-+...+.++.|..++.+++..+|+-..|- .=..++.+.+++..|+.-+.++++.+|.....|+.-+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 344567788888888888888888754433 3337788888999999999999999988888888888888888888888
Q ss_pred HHHHHHHHh
Q 046803 431 EVVRNIMIQ 439 (580)
Q Consensus 431 ~~~~~~m~~ 439 (580)
...|+.-..
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 888876544
No 319
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.23 E-value=1.2 Score=24.72 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=18.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHH
Q 046803 412 GHYVMLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 412 ~~~~~l~~~y~~~g~~~~a~~~~~ 435 (580)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355677888888888888887765
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.03 E-value=5.5 Score=33.37 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=28.5
Q ss_pred cCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 390 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.++.+++..++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555555555555555555555555555555555555555443
No 321
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.90 E-value=27 Score=30.88 Aligned_cols=114 Identities=11% Similarity=0.013 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHHHcCCHHHH
Q 046803 291 EAVELFHRMRAHGVRPNNVTFV--AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH-----VCMVDLFGRAGLLNEA 363 (580)
Q Consensus 291 ~A~~~~~~m~~~g~~pd~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A 363 (580)
+......++....-.....++. .+...+...+++++|...++..... |....+ -.|.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4445555555432221222222 2334566778888888877766521 222222 2345667778888888
Q ss_pred HHHHHhHc-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 364 YKFVKDVI-GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 364 ~~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
+..+ +.. +..-.......-...+...|+-++|...|++.++.+++
T Consensus 146 L~~L-~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTL-DTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHH-hccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 8888 332 21112222333445677788888888888888877643
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.43 E-value=1.6 Score=25.54 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=10.0
Q ss_pred HHHhcCCchHHHHHHHHHHhcCC
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~p 408 (580)
++.+.|++++|...++++++..|
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHHHHCc
Confidence 33344444444444444444443
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.36 E-value=1 Score=26.72 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCC
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 375 (580)
.|..+...|...|++++|.+.|++.+...|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566677777777777777766654444
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.22 E-value=1.9 Score=26.92 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=22.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 412 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888999999999999999888764
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.86 E-value=0.7 Score=39.03 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=54.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHH
Q 046803 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191 (580)
Q Consensus 112 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 191 (580)
++..+.+.+.++....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777777777766566677888888888888777777777774332 2334455556666666666
Q ss_pred HHHHHHH
Q 046803 192 IGLFNLM 198 (580)
Q Consensus 192 ~~~~~~m 198 (580)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6665554
No 326
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.72 E-value=7.6 Score=35.43 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=67.2
Q ss_pred HHHHHcCCHHHHHHHHHhHc--------CCCCCHHHHH-----------HHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 352 DLFGRAGLLNEAYKFVKDVI--------GEKPAPAVWT-----------AMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~--------~~~p~~~~~~-----------~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
+-+.+.|++.+|..-|++++ ..+|...-|. ..-..+...|++-++++...+++...|.|..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 44556777777777776654 4455433332 2334456778999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 413 HYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+|..-+.+.+..=+.++|..-|....+.
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 9999999999888889999988888764
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.38 E-value=75 Score=34.74 Aligned_cols=165 Identities=12% Similarity=0.028 Sum_probs=93.9
Q ss_pred ccCChhHHHHHHccCCCCChhhHHHHH----HHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHH
Q 046803 52 DAGFITYAQRIFFCIPSPDSFLFNTLI----IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 127 (580)
+..-++.|..+-..-.. |...-..+. +-+.+.|++++|...|-+-... +.|. .++.-+.....+..-..
T Consensus 346 kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~ 418 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTS 418 (933)
T ss_pred HhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHH
Confidence 44455666666544322 222223333 2345678999998888776543 3332 24555555566666667
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChh-HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 046803 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV-AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206 (580)
Q Consensus 128 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 206 (580)
+++.+.+.|+.. ...-+.|+++|.|.++.+.-.+..+........ -....+..+.+.+..++|..+-.+... .
T Consensus 419 YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----h 492 (933)
T KOG2114|consen 419 YLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-----H 492 (933)
T ss_pred HHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----C
Confidence 777888888653 344467889999999988888887776621111 133445555566666666554433221 2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHH
Q 046803 207 STTCVCVLAACAQLGDIDLGRWVHEF 232 (580)
Q Consensus 207 ~~t~~~ll~a~~~~~~~~~a~~~~~~ 232 (580)
......++ -..+++++|.+++..
T Consensus 493 e~vl~ill---e~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 493 EWVLDILL---EDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHH---HHhcCHHHHHHHHhc
Confidence 22222222 345666666666544
No 328
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.17 E-value=30 Score=29.97 Aligned_cols=131 Identities=12% Similarity=0.073 Sum_probs=71.2
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcH-HHhhHHhhHhhhc-CCHHHHHHHHHhcc
Q 046803 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV-VLATSLINMYARC-GNVSKAREIFDMMS 269 (580)
Q Consensus 192 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~y~~~-g~~~~A~~~~~~~~ 269 (580)
++.++.+.+.|++|+...+..+++.+.+.|.+..-.+ +++.++-+|. .+.-.|++.-.+. .-.+-|.+.+.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh-
Confidence 3455666667788888888888888888887654433 3344433333 3333332221110 0122333333333
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
...+..++..+...|++-+|+++.++.... +......++.+..+.++...-..+|+-.
T Consensus 89 ---~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 89 ---GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234556677778888888888887765322 1222244566666666655544444444
No 329
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.15 E-value=3.2 Score=42.57 Aligned_cols=99 Identities=18% Similarity=0.134 Sum_probs=63.0
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHH
Q 046803 321 AGLVQEGHRVFASMRQEYGLLPG--VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
.|+...|...+..+. ...|. ......|...+.+.|...+|-.++.+.+.+.- .+.++..+..++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 466666666666554 33332 12233455666666777777777766665443 3566777777777777888888
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 398 EVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 398 ~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
+.+++++++.|+++..-..|..+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 8888888887777776665554433
No 330
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.06 E-value=1.9 Score=24.31 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=11.7
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCC
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p 408 (580)
.+...+...++++.|...+++.++..|
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 333444444444444444444444333
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.99 E-value=7.8 Score=38.85 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=80.7
Q ss_pred hcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046803 285 MHGYGTEAV-ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 285 ~~g~~~~A~-~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 363 (580)
..|+...|- +++..+....-.|+.+...+.| ..+.|+++.+.+.+....+ -+.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 456655554 4455555554556666555544 4678888888888777643 3344566777888888888999999
Q ss_pred HHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 364 YKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 364 ~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
..+-.-+++.+. ++.+...-.......|-++++...+++++.++|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 988844444332 4555554455556778888888888888888765
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.83 E-value=43 Score=31.64 Aligned_cols=60 Identities=10% Similarity=-0.016 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
++.....|...|.+.+|.++.++++.++|-+...+..|...|+..|+--+|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 445556889999999999999999999999999999999999999998888887777754
No 333
>PRK09687 putative lyase; Provisional
Probab=82.64 E-value=46 Score=31.80 Aligned_cols=82 Identities=11% Similarity=-0.021 Sum_probs=36.3
Q ss_pred CCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCh----HHHHHHHHHHHHhCCCCchH
Q 046803 67 PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL----NLGRAVHCHVFVSGYDSDLH 142 (580)
Q Consensus 67 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~----~~a~~~~~~~~~~g~~~~~~ 142 (580)
..+|.......+..+...|. .+++..+..+... +|...=...+.+++..|+. +++...+..+... .++..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 34555555555555555553 3444444444332 2333333444455555542 2333333333222 34445
Q ss_pred HHHHHHHHHHhC
Q 046803 143 VQAALVNFYAKS 154 (580)
Q Consensus 143 ~~~~li~~y~~~ 154 (580)
+-...+.+++..
T Consensus 107 VR~~A~~aLG~~ 118 (280)
T PRK09687 107 VRASAINATGHR 118 (280)
T ss_pred HHHHHHHHHhcc
Confidence 554444444443
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.58 E-value=5.4 Score=35.68 Aligned_cols=75 Identities=11% Similarity=0.097 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHH
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLG 385 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~ 385 (580)
|....++.+.+.+.+.+|+...+.-++. .+.+...-..+++.|+-.|++++|..-++-.-.+.|+ ...|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455667778889999999988776653 2234555566899999999999999888444455553 455666665
Q ss_pred H
Q 046803 386 A 386 (580)
Q Consensus 386 ~ 386 (580)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 335
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.49 E-value=62 Score=33.20 Aligned_cols=175 Identities=11% Similarity=0.122 Sum_probs=113.1
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
+.|....-++++.++....++-.+.+..+|.+ .+-..+..++..|.++ ..++-..+|+++.+.. -|...+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 44556667788888888888888888887774 5667788888888888 5677888888888743 34444554444
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhH---cCCCCCHHHHHHHHHHH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPG------VEHHVCMVDLFGRAGLLNEAYKFVKDV---IGEKPAPAVWTAMLGAC 387 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~p~~~~~~~ll~~~ 387 (580)
-+...++.+.+..+|.++.. .+.|. .+.|.-|+..- ..+.+.-+.+..+. .+...-...+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44555888888888888764 33442 33455554422 23455555544222 13333344555566677
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
....++++|++++..+++.+..|..+-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 788889999999988888776665554444443
No 336
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.46 E-value=78 Score=34.28 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=36.3
Q ss_pred HhcCCchHHHHHHHHHHhcC---CC------CcchHHHHHHHHHhcCChhHHHHHHH
Q 046803 388 KMHKNFDLGVEVAEHLLSVE---PE------NPGHYVMLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~---p~------~~~~~~~l~~~y~~~g~~~~a~~~~~ 435 (580)
...+++..|....+.+.+.. |. .+..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 46788999999999887643 22 24455566667778899999999998
No 337
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.38 E-value=63 Score=33.17 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhh
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 253 (580)
..-+++..+.++..+.-...+..+|...| .+...|..++..|... ..++-..+++++++..+ .|++...-|+..|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHH
Confidence 44556666666666666777777776643 4566677777777666 44556666666666653 24444455555555
Q ss_pred hcCCHHHHHHHHHhccCC------C---hHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCC
Q 046803 254 RCGNVSKAREIFDMMSEL------N---VIAWTAMISGYGMHGYGTEAVELFHRMRA-HGVRPNNVTFVAVLSACAHAGL 323 (580)
Q Consensus 254 ~~g~~~~A~~~~~~~~~~------~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll~a~~~~g~ 323 (580)
+ ++.+.+...|.++..+ + -..|.-++..- ..+.+..+.+..+... .|..--.+.+--+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 5 6666666666655421 1 12455444321 2344555555555543 3333333444445556666777
Q ss_pred HHHHHHHHHHhHH
Q 046803 324 VQEGHRVFASMRQ 336 (580)
Q Consensus 324 ~~~a~~~~~~~~~ 336 (580)
+.+|.+++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776553
No 338
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.30 E-value=1.8 Score=36.48 Aligned_cols=43 Identities=9% Similarity=0.087 Sum_probs=16.5
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHH
Q 046803 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225 (580)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 225 (580)
.+.+.++....+++.+...+...+....+.++..|++.+..+.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~ 60 (143)
T PF00637_consen 18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEK 60 (143)
T ss_dssp TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCH
T ss_pred HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchH
Confidence 3334444444444444433323333344444444444433333
No 339
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.25 E-value=79 Score=34.21 Aligned_cols=71 Identities=11% Similarity=0.004 Sum_probs=43.2
Q ss_pred ChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCh-------HHHHHHHHHHHHhCCCCchH
Q 046803 70 DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL-------NLGRAVHCHVFVSGYDSDLH 142 (580)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-------~~a~~~~~~~~~~g~~~~~~ 142 (580)
+...|- +|-.+.|.|++++|.++..+.... .......|...+.++....+- +....-|++.++.....|++
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 334564 677889999999999999666543 455566788888888765332 23444555555444333543
No 340
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.85 E-value=2.9 Score=28.18 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
.+.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45667888899999999999999999987543
No 341
>PRK10941 hypothetical protein; Provisional
Probab=81.74 E-value=6.6 Score=37.09 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.+.|-.+|.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 5677778899999999999999999999999988888999999999999999988887664
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.56 E-value=11 Score=33.41 Aligned_cols=74 Identities=14% Similarity=0.030 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCcHHHhhHHhhHhhhcCCHHHHH
Q 046803 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ---GLDVNVVLATSLINMYARCGNVSKAR 262 (580)
Q Consensus 188 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~y~~~g~~~~A~ 262 (580)
-++|.+.|-++...+..-++.....+...| ...+.+++.+++....+. +-.+|+.++.+|++.|.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345666666666655443443333333333 355666666666666543 22456666666777776666666653
No 343
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.45 E-value=6 Score=35.94 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHhHcCCCCCHHH-HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 358 GLLNEAYKFVKDVIGEKPAPAV-WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 358 g~~~~A~~~~~~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
.+++.|...|-+++-+.|.+.+ |..=+-.+.+.++++.+..--++++++.|+.......|+........+++|...+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3455555555556656665433 444444555566666666666666666666666666666666666666666666666
Q ss_pred HH
Q 046803 437 MI 438 (580)
Q Consensus 437 m~ 438 (580)
..
T Consensus 104 a~ 105 (284)
T KOG4642|consen 104 AY 105 (284)
T ss_pred HH
Confidence 53
No 344
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.25 E-value=3.9 Score=25.39 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMR 300 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 300 (580)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355566666666666666666666554
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.08 E-value=2.6 Score=24.56 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 413 HYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667899999999999999999998764
No 346
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.42 E-value=11 Score=29.30 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=29.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHH
Q 046803 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416 (580)
Q Consensus 371 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 416 (580)
+..-|++.+..+.+.+|++.+++..|.++++-+...-.+....|-.
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~ 84 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPY 84 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHH
Confidence 3556888888888899999999999998888877544333334443
No 347
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.41 E-value=14 Score=28.32 Aligned_cols=58 Identities=9% Similarity=0.152 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH-HhCCCCchHHHHHHH
Q 046803 89 DSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF-VSGYDSDLHVQAALV 148 (580)
Q Consensus 89 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li 148 (580)
++.+-++.+....+.|+.....+.|+||.+.+|+..|.++++-+. +.|. +...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 445555666666788888888888888888888888888888765 3332 333555444
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.25 E-value=21 Score=31.75 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHcCCHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A 363 (580)
+..+.+|+..|.+.|+++.|
T Consensus 178 ~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 178 PEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHHHhcchhhh
Confidence 34444444444444444433
No 349
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=78.64 E-value=63 Score=30.84 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=10.7
Q ss_pred hCCChhHHHHHHHHHHH
Q 046803 184 QNGFAKEAIGLFNLMRD 200 (580)
Q Consensus 184 ~~g~~~~A~~~~~~m~~ 200 (580)
+.|+.+.|..++.+...
T Consensus 5 ~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhCCHHHHHHHHHHhhh
Confidence 45666666666666654
No 350
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.38 E-value=1.1e+02 Score=33.69 Aligned_cols=190 Identities=17% Similarity=0.147 Sum_probs=103.0
Q ss_pred hhcCCHHHHHHHHHhcc----CCCh-------HHHHHHHHH-HHhcCChHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 046803 253 ARCGNVSKAREIFDMMS----ELNV-------IAWTAMISG-YGMHGYGTEAVELFHRMRAH----GVRPNNVTFVAVLS 316 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~pd~~t~~~ll~ 316 (580)
....++++|..+..+.. .++. ..|+.+-.. ....|++++|+.+-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678888888776654 2222 256655432 34567888888888876653 12234455666666
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH-----HHHHHcCCHHHH--HHHH---HhH-cCCCCC----HHHHH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV-----DLFGRAGLLNEA--YKFV---KDV-IGEKPA----PAVWT 381 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~~~A--~~~~---~~~-~~~~p~----~~~~~ 381 (580)
+..-.|++++|..+.....+. .-.-+..++.... ..+-.+|....| ...| +.. .+.+|- ..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777788999888877665432 1122333332222 234456632222 2222 111 122332 23344
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcC----CCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVE----PENPG---HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHV 446 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~----p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~ 446 (580)
.++.++.+ .+.+..-.....+.. |.... .+..|+.++...|+.++|...+.++........+
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 44444443 444444444444322 33211 2236788888999999999999888765544433
No 351
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.06 E-value=1e+02 Score=32.92 Aligned_cols=273 Identities=9% Similarity=0.032 Sum_probs=145.8
Q ss_pred HHHHHHHHccCCCC-ChhHHHHHHHH-----HHhCCChhHHHHHHHHHHH-------CCCCCChhHHHHHHHHHHhCC--
Q 046803 157 VDVARKVFDRMPDK-SVVAWNSMISG-----YEQNGFAKEAIGLFNLMRD-------FGVNPDSTTCVCVLAACAQLG-- 221 (580)
Q Consensus 157 ~~~A~~~f~~~~~~-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~~-- 221 (580)
...|.+.|+..... +...-..+... +....+.+.|+..|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777766553 33333333322 4455678888888888866 44 3335555666666543
Q ss_pred ---ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh-cCCHHHHHHHHHhccCC-ChHHHHHHHHHHH----hcCChHHH
Q 046803 222 ---DIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR-CGNVSKAREIFDMMSEL-NVIAWTAMISGYG----MHGYGTEA 292 (580)
Q Consensus 222 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A 292 (580)
+.+.|..++....+.| .|+....-..+..... -.+...|.++|....+. .+.+.-.+...|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5567888888888887 4454444333333333 34677888888876642 2222222222222 23467788
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH---HH----cCCHHHHHH
Q 046803 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF---GR----AGLLNEAYK 365 (580)
Q Consensus 293 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~----~g~~~~A~~ 365 (580)
..++++.-+.| .|-..--...+..+.. +.++.+.-.+..+.. .+.+.-...-..+.+.. .. ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 88888888776 3332222233334444 566655555554432 23221111111111111 01 224555555
Q ss_pred HHHhHcCCCCCHHHHHHHHHHHHhc----CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhc---CChhHHHHHHHHHH
Q 046803 366 FVKDVIGEKPAPAVWTAMLGACKMH----KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA---GRMDRVEVVRNIMI 438 (580)
Q Consensus 366 ~~~~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m~ 438 (580)
++.+.. ..-+......|...|..- .+++.|...+.++.+.. ......|+.++... ..+..|.++++...
T Consensus 461 ~~~~a~-~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~ 536 (552)
T KOG1550|consen 461 LYSRAA-AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQAS 536 (552)
T ss_pred HHHHHH-hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHH
Confidence 553332 222444444555544332 35778888888877665 56666677776532 12677777777765
Q ss_pred hC
Q 046803 439 QK 440 (580)
Q Consensus 439 ~~ 440 (580)
+.
T Consensus 537 ~~ 538 (552)
T KOG1550|consen 537 EE 538 (552)
T ss_pred hc
Confidence 53
No 352
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.03 E-value=30 Score=26.83 Aligned_cols=86 Identities=16% Similarity=0.238 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046803 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302 (580)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 302 (580)
.++|..|-+.+...+-. ...+--.=+..+...|++++|..+.+.+.-||+..|-+|-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45666666665554311 22222222344667888888888888888888888877654 3566677777777777766
Q ss_pred CCCCCHHHHH
Q 046803 303 GVRPNNVTFV 312 (580)
Q Consensus 303 g~~pd~~t~~ 312 (580)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 34444443
No 353
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.86 E-value=62 Score=34.82 Aligned_cols=183 Identities=18% Similarity=0.299 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh----------HHHHHHHHHHhCCChHHHHHHHHHHHHc-C-CCCc
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST----------TCVCVLAACAQLGDIDLGRWVHEFIVGQ-G-LDVN 241 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~-~~~~ 241 (580)
+-..++-.|....+++..+++.+.+++. ||.. .|.-.++---+.|+-++|..+.-.+++. | +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 4445566677777777777777777652 3321 2222232223345556666555555443 2 222
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT---FVAVLSAC 318 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t---~~~ll~a~ 318 (580)
++||-||++ |+.|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+-
T Consensus 279 --------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 279 --------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 345555553 22221 11234445556778888888776 5676543 33343332
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 398 (580)
.+ .++...++ +. .-..|-..++|.|.+++-.+++ |+.+| +.+-.-..++.+|++
T Consensus 334 G~--~Fens~El-q~------------IgmkLn~LlgrKG~leklq~YW--------dV~~y---~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 334 GE--HFENSLEL-QQ------------IGMKLNSLLGRKGALEKLQEYW--------DVATY---FEASVLANDYQKAIQ 387 (1226)
T ss_pred hh--hccchHHH-HH------------HHHHHHHHhhccchHHHHHHHH--------hHHHh---hhhhhhccCHHHHHH
Confidence 21 11111111 11 1122456678899998888888 33333 345556788999999
Q ss_pred HHHHHHhcCCCCc
Q 046803 399 VAEHLLSVEPENP 411 (580)
Q Consensus 399 ~~~~~~~~~p~~~ 411 (580)
+.+.|.+++|+.-
T Consensus 388 Aae~mfKLk~P~W 400 (1226)
T KOG4279|consen 388 AAEMMFKLKPPVW 400 (1226)
T ss_pred HHHHHhccCCcee
Confidence 9999999998743
No 354
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=77.72 E-value=32 Score=27.02 Aligned_cols=88 Identities=9% Similarity=0.039 Sum_probs=55.1
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 046803 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198 (580)
Q Consensus 119 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 198 (580)
....++|..+.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|.. .+.|..+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456778888887777653 333444444566788899999966666666788888877654 4778888888888877
Q ss_pred HHCCCCCChhHH
Q 046803 199 RDFGVNPDSTTC 210 (580)
Q Consensus 199 ~~~g~~p~~~t~ 210 (580)
...| .|....|
T Consensus 96 a~~g-~~~~q~F 106 (116)
T PF09477_consen 96 ASSG-SPELQAF 106 (116)
T ss_dssp CT-S-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 6655 3333333
No 355
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.93 E-value=4.4 Score=22.66 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCC
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 375 (580)
.|..+...+...|++++|...+++.+...|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345566667777777777777766665554
No 356
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.85 E-value=15 Score=33.46 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCch-------HHHHHHHHHHhcC--CC----CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 377 PAVWTAMLGACKMHKNFD-------LGVEVAEHLLSVE--PE----NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 377 ~~~~~~ll~~~~~~g~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
...+.-+...|+..|+.+ .|.+.|+++.+.+ |. .......++.++.+.|+.++|.+.|.++...+
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 345666677777777744 4455555555433 22 23566778999999999999999999987643
No 357
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.48 E-value=84 Score=31.32 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=46.3
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCC-CcchHHHHHHHHH-hcCChhHHHHHHHHHHh
Q 046803 383 MLGACKMHKNFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYA-LAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 383 ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~-~~g~~~~a~~~~~~m~~ 439 (580)
.+....+.|-+..|.+..+-++.++|. ||-.....++.|+ ++++++--.++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 345677889999999999999999998 8888888888886 77888877777776544
No 358
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=75.95 E-value=4.1 Score=36.67 Aligned_cols=58 Identities=19% Similarity=0.352 Sum_probs=42.3
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
+....|+.+.|.+++.+++...|+ ...|--+...--+.|+++.|.+.|++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344567777777777777777664 6667777777777788888888888887777765
No 359
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=75.60 E-value=1e+02 Score=31.68 Aligned_cols=284 Identities=8% Similarity=-0.050 Sum_probs=0.0
Q ss_pred hHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 046803 57 TYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136 (580)
Q Consensus 57 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 136 (580)
+-|.+.|+-..+-+......+-.++--..+-+....+|++... ..|+...+...|..|-..-....+..+...+-
T Consensus 268 ~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~--- 342 (568)
T KOG2396|consen 268 DLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMC--- 342 (568)
T ss_pred HHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 046803 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216 (580)
Q Consensus 137 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 216 (580)
..+.+.........-+......+.......++...-..+...+++.|...|..-+..
T Consensus 343 -----------------------~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~ 399 (568)
T KOG2396|consen 343 -----------------------VFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQV 399 (568)
T ss_pred -----------------------HHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHH
Q ss_pred HHhC--CChHHHHHHHHHHHHcCCCCcHHHhhHHh-hHhhhcCCHHHHHHHHHhccCCChHHH-HHHHHHHHhcCChHHH
Q 046803 217 CAQL--GDIDLGRWVHEFIVGQGLDVNVVLATSLI-NMYARCGNVSKAREIFDMMSELNVIAW-TAMISGYGMHGYGTEA 292 (580)
Q Consensus 217 ~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A 292 (580)
.... .---.-..++..+.+.-..+....|++.. ..+......+.....+..+..++..++ +..+.-+.+.|-..+|
T Consensus 400 ~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~a 479 (568)
T KOG2396|consen 400 LIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKA 479 (568)
T ss_pred HHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHH
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhH
Q 046803 293 VELFHRMRAHGVRPNNVTFVAVLS--ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370 (580)
Q Consensus 293 ~~~~~~m~~~g~~pd~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 370 (580)
...|..+... .+|....|..++. .-..+-++.-++.+|+.|...+| .++..|...+..=...|+.+.+-.++.++
T Consensus 480 rk~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 480 RKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHH
Q ss_pred c
Q 046803 371 I 371 (580)
Q Consensus 371 ~ 371 (580)
+
T Consensus 557 ~ 557 (568)
T KOG2396|consen 557 M 557 (568)
T ss_pred H
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.32 E-value=44 Score=33.86 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=89.1
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC-CCHHHHHHHHHHHHhcCCchHHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK-PAPAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
...|++-.|.+-+......+.-.|+.... ........|+++.+...+...-+.- ....+...++......|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34677776665544444444545554333 3344667899999999884443322 23566788889999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCce
Q 046803 398 EVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGY 448 (580)
Q Consensus 398 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~ 448 (580)
...+.++..+-+++.....-+..-...|-++++...|++....+.+.+.|+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 999999987777666655555555677889999999999877655444443
No 361
>PRK10941 hypothetical protein; Provisional
Probab=74.77 E-value=17 Score=34.38 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
.+-.+|.+.++++.|+...+..+...|+ +.-+.--.-.|.+.|.+..|..-++..++..|+++.+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 4566788889999999999777778885 6667777778899999999999999999988887754
No 362
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.68 E-value=7.6 Score=29.66 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 397 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
...+++.++.+|+|...-..++..+...|++++|.+.+-.+.+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34556666677777777777777777777777777777777654
No 363
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.91 E-value=64 Score=28.62 Aligned_cols=128 Identities=15% Similarity=0.082 Sum_probs=67.4
Q ss_pred hHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHH--HHHHHHccCChHHHHHHHHHHHHhCCCCc--hHHHHHHH
Q 046803 73 LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA--VIKSCAHLSILNLGRAVHCHVFVSGYDSD--LHVQAALV 148 (580)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li 148 (580)
.|..++.... .+.+ +.....+.+.....+..-.++.. +.......++++.|..-+...+...-..+ ...--.|.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 3444554443 3333 55555556655422212222222 23345667777777777776654321111 11222344
Q ss_pred HHHHhCCCHHHHHHHHccCCCCChhH--HHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 046803 149 NFYAKSNNVDVARKVFDRMPDKSVVA--WNSMISGYEQNGFAKEAIGLFNLMRDFG 202 (580)
Q Consensus 149 ~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g 202 (580)
......|.+|+|...++....++-.+ ...-.+.+...|+-++|..-|.+....+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 55666777777777777766553332 2233456677777777777777776654
No 364
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.80 E-value=11 Score=33.78 Aligned_cols=65 Identities=9% Similarity=0.135 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
.+.-++.+.+.+.+++|+...++.++.+| |...-..|+..++-.|++++|..-++-+-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456778889999999999988888888 567778889999999999999999999989888753
No 365
>PRK13342 recombination factor protein RarA; Reviewed
Probab=73.51 E-value=95 Score=31.66 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC
Q 046803 174 AWNSMISGYEQ---NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221 (580)
Q Consensus 174 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 221 (580)
.+..+++++.+ .++.+.|+..+..|.+.|..|....-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34455555554 4778888888888888887776555555555544444
No 366
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.32 E-value=77 Score=30.51 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCCCcc
Q 046803 395 LGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 395 ~a~~~~~~~~~~~p~~~~ 412 (580)
.|.+...++.+.+|.-|.
T Consensus 380 ~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHhhcCCCCcH
Confidence 466677777888877554
No 367
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=73.10 E-value=6 Score=37.23 Aligned_cols=59 Identities=19% Similarity=0.297 Sum_probs=36.9
Q ss_pred HcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 356 RAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
+.|+.++|..+|+.++...|+ +.+..-+....-.+++.-+|.++|-+++.+.|.|..+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 566777777777666666663 55555555555555666667777777766666665443
No 368
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=72.19 E-value=1.9e+02 Score=33.17 Aligned_cols=256 Identities=7% Similarity=-0.054 Sum_probs=129.0
Q ss_pred HHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 046803 161 RKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240 (580)
Q Consensus 161 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 240 (580)
..+...+.++|...-..-+..+.+.+. .++...+....+ .+|...-...+.++...+........+..+++. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 345555566777766666777766665 345555555553 234444344445554443211112233333332 4
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 320 (580)
|..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.+|...=.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 555555556665544321 12234455556776666666666666554322 12222 23455544555556666
Q ss_pred cCCHHH-HHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHH
Q 046803 321 AGLVQE-GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399 (580)
Q Consensus 321 ~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 399 (580)
.+..+. +...+..+.+ .++...-...+.++.+.|..+.+...+..++. .++..+-...+.++...+. +++...
T Consensus 769 ~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~-d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALR-ASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred hccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc-CCChHHHHHHHHHHHhccc-cchHHH
Confidence 554332 2334444433 35666666777788887776555444434443 3455555556666666654 345555
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 400 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+..+++ +| +...-..-+.++.+.+.-..+...+....+
T Consensus 843 L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 555553 22 233444445555443223345555554443
No 369
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=72.12 E-value=1e+02 Score=30.15 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=62.9
Q ss_pred HHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHh---cCChhHHHHHHH
Q 046803 360 LNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL---AGRMDRVEVVRN 435 (580)
Q Consensus 360 ~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~ 435 (580)
.+.-+.++++++...|+ ...+..++..+.+..+.+...+.+++++..+|.++..|...++.... .-.+++...+|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45667778777877785 77788889999988899999999999999999999988888776654 345777777777
Q ss_pred HHHh
Q 046803 436 IMIQ 439 (580)
Q Consensus 436 ~m~~ 439 (580)
+...
T Consensus 127 ~~l~ 130 (321)
T PF08424_consen 127 KCLR 130 (321)
T ss_pred HHHH
Confidence 6544
No 370
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.68 E-value=91 Score=29.40 Aligned_cols=159 Identities=11% Similarity=0.138 Sum_probs=77.4
Q ss_pred hcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcCCHH-HHH
Q 046803 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR----MRAHGVRPNNVTFVAVLSACAHAGLVQ-EGH 328 (580)
Q Consensus 254 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~pd~~t~~~ll~a~~~~g~~~-~a~ 328 (580)
+++++++|.+++..- ...+.++|+..-|-++-.- ..+.+.++|......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456777777765432 2234455554444333332 233455666655555555444332211 112
Q ss_pred HHHHHhHH--hcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 329 RVFASMRQ--EYGLL--PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 329 ~~~~~~~~--~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
++.+.+.+ +.+-. -++.....+...|.+.|++.+|+..| ..+..|+...+..++.-....|.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf--l~~~~~~~~~~~~ll~~~~~~~~------------ 136 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF--LLGTDPSAFAYVMLLEEWSTKGY------------ 136 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH--HTS-HHHHHHHHHHHHHHHHHTS------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH--HhcCChhHHHHHHHHHHHHHhcC------------
Confidence 22222221 11222 25677778899999999999999888 22323333333223333333333
Q ss_pred hcCCCCcchHHH-HHHHHHhcCChhHHHHHHHHHHhC
Q 046803 405 SVEPENPGHYVM-LSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 405 ~~~p~~~~~~~~-l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
|.+...|.. .+--|...|+...|...++...++
T Consensus 137 ---~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 137 ---PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ---CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333344443 334577889999999998887765
No 371
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.26 E-value=18 Score=37.37 Aligned_cols=135 Identities=12% Similarity=0.047 Sum_probs=94.8
Q ss_pred CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHhHcCCCCC--HH
Q 046803 304 VRPNNVTFVAVLSACAHA--GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR-AGLLNEAYKFVKDVIGEKPA--PA 378 (580)
Q Consensus 304 ~~pd~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~p~--~~ 378 (580)
-.|+..+...++.-.... ..-+-|-.++..|.+ .+.|--...| +...|.| .|+...|...+..++...|. .+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 346666655555433322 123445566666643 3444322222 3334444 68999999999888877773 34
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 379 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
....|.....+.|-.-.|-.++.+.+.+....|-++..++++|....+.+.|.+.|+...++.
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 456677777888888899999999999887788899999999999999999999999887754
No 372
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.19 E-value=63 Score=27.30 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=10.9
Q ss_pred hhhcCCHHHHHHHHHhccC
Q 046803 252 YARCGNVSKAREIFDMMSE 270 (580)
Q Consensus 252 y~~~g~~~~A~~~~~~~~~ 270 (580)
+...|++++|.++|+++.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 4455666666666665554
No 373
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.47 E-value=1e+02 Score=29.36 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=61.4
Q ss_pred CccHHHHHHHHHHH-CCCCCChhhHHHHHHHHHc-cCC-hHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHhCCCHHHHH
Q 046803 86 FSTDSLLFYRRMIV-SNISPSNYTFSAVIKSCAH-LSI-LNLGRAVHCHVFVS-GYDSDLHVQAALVNFYAKSNNVDVAR 161 (580)
Q Consensus 86 ~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~-~~~-~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~ 161 (580)
...+|+.+|+.... ..+--|..+...+++.... .+. +..--++.+.+... |-.++..+....+..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666653221 2234456666666665544 111 11112222333322 33556666677777777788887777
Q ss_pred HHHccCCC-----CChhHHHHHHHHHHhCCChhHHHHHH
Q 046803 162 KVFDRMPD-----KSVVAWNSMISGYEQNGFAKEAIGLF 195 (580)
Q Consensus 162 ~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~ 195 (580)
++++.... .|...|..+|..-...|+..-...+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 77765432 46677888888888888776544443
No 374
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.43 E-value=26 Score=33.69 Aligned_cols=92 Identities=11% Similarity=0.048 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCC---CC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEK---PA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
+|--=.+-|.+..++..|.+.|.+.+..+ || .+.|+.=..+-...|++..++.-..+++.++|.+...|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 44444566788899999999998888432 43 45577666677778999999999999999999999988888888
Q ss_pred HHhcCChhHHHHHHHHH
Q 046803 421 YALAGRMDRVEVVRNIM 437 (580)
Q Consensus 421 y~~~g~~~~a~~~~~~m 437 (580)
+....++++|....+..
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 88888877666655543
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.79 E-value=8.5 Score=24.75 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 415 VMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 415 ~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
..|+.+|...|+.+.|.++++.....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999887543
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.71 E-value=15 Score=27.00 Aligned_cols=46 Identities=9% Similarity=0.008 Sum_probs=18.8
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 046803 321 AGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKF 366 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 366 (580)
....++|...+....++..-.|+ -.+..+|+.+|+..|++.+++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433222222 22334444444444444444443
No 377
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.92 E-value=67 Score=29.51 Aligned_cols=82 Identities=9% Similarity=-0.025 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHH-HHHHHHHHHhcCCchHHHH
Q 046803 321 AGLVQEGHRVFASMRQEYGLLPGV-EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV-WTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~ 398 (580)
...++.|...|.+.+ -+.|+. ..|+.-+..+.+..+++.+.+=-++++.+.||..- ...+..+......+++|+.
T Consensus 23 ~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 344555665555544 445654 44555566666777777777766677777776443 4445555667777888888
Q ss_pred HHHHHHh
Q 046803 399 VAEHLLS 405 (580)
Q Consensus 399 ~~~~~~~ 405 (580)
.+.++.+
T Consensus 100 ~Lqra~s 106 (284)
T KOG4642|consen 100 VLQRAYS 106 (284)
T ss_pred HHHHHHH
Confidence 8887754
No 378
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=68.65 E-value=40 Score=25.69 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=35.4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCChh-HHHHHHHHH
Q 046803 373 EKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE--NPGHYVMLSNIYALAGRMD-RVEVVRNIM 437 (580)
Q Consensus 373 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~-~a~~~~~~m 437 (580)
..| |...-..+...+...|+++.|++.+-++++.++. +...-..|+.++.-.|.-+ .+.+..++|
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 344 3555566666777777777777777777666544 3455556666666666532 444444443
No 379
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.51 E-value=1.4e+02 Score=30.30 Aligned_cols=198 Identities=12% Similarity=0.064 Sum_probs=84.8
Q ss_pred HHHHHHCCCCCChhh--HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCCHHHHHHHHccCCC
Q 046803 94 YRRMIVSNISPSNYT--FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH--VQAALVNFYAKSNNVDVARKVFDRMPD 169 (580)
Q Consensus 94 ~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~ 169 (580)
++.+.+.|..|+... ..+.+..++..|+.+ +.+.+++.|..++.. ...+.+...++.|+.+.+..+++.-..
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~ 93 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCc
Confidence 333344455544322 123333444455554 333344555443321 112234455566777776666654332
Q ss_pred C----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhH--HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHH
Q 046803 170 K----SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTT--CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243 (580)
Q Consensus 170 ~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 243 (580)
. +..-++. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..+ .+.|..++..
T Consensus 94 ~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~ 164 (413)
T PHA02875 94 ADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIE 164 (413)
T ss_pred ccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCC
Confidence 1 1111222 2223344554 34444455565554321 11233334455665544333 3344332211
Q ss_pred --HhhHHhhHhhhcCCHHHHHHHHHhccCCChHH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 046803 244 --LATSLINMYARCGNVSKAREIFDMMSELNVIA---WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308 (580)
Q Consensus 244 --~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 308 (580)
...+.+...+..|+.+-+.-+++.-..++... ..+.+..-+..|+.+ +.+-+.+.|..|+.
T Consensus 165 d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 165 DCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 12233334455677666666555444333221 123333334455543 34444556666654
No 380
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.72 E-value=73 Score=30.02 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=54.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH--
Q 046803 280 ISGYGMHGYGTEAVELFHRMRA--HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG-- 355 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-- 355 (580)
|++++..+++.+++...-+--+ ..++|...- .-|-.|++.+....+.++-....+.. -.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIle--LCILLysKv~Ep~amlev~~~WL~~p-~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILE--LCILLYSKVQEPAAMLEVASAWLQDP-SNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHhcCHHHHHHHHHHHHhCc-ccCCchhhHHHHHHHHHH
Confidence 6788888888888876655443 224443333 23335788888888888777776532 1223444766666654
Q ss_pred ---HcCCHHHHHHHH
Q 046803 356 ---RAGLLNEAYKFV 367 (580)
Q Consensus 356 ---~~g~~~~A~~~~ 367 (580)
=.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 468999999888
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.08 E-value=30 Score=32.68 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 348 ~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
......|..+|.+.+|.++.++.+...| +...|-.|+..+...||--.+...++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3456778899999999999988888888 67888999999999999888888877764
No 382
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.18 E-value=67 Score=25.35 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=47.6
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046803 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300 (580)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 300 (580)
...++|..|.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 346778888887777663 333333344555677888888844444444578888866543 46777777777777776
Q ss_pred hCC
Q 046803 301 AHG 303 (580)
Q Consensus 301 ~~g 303 (580)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 654
No 383
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.83 E-value=52 Score=27.66 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=54.1
Q ss_pred HHHhCCCCCh--hhhchHHHHHhccCChhHHHHHHccCCC---------CChhhHHHHHHHHHcCCC-ccHHHHHHHHHH
Q 046803 31 LIVAGYGRSR--SMLTKLLSLVCDAGFITYAQRIFFCIPS---------PDSFLFNTLIIRNSKANF-STDSLLFYRRMI 98 (580)
Q Consensus 31 ~~~~g~~~~~--~~~~~ll~~~~~~~~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 98 (580)
+.+.+..+++ ...|.++..+....++....++++.+.. .+-.+|+.++.+.++..- --.+..+|..|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 4444554443 3466777666655566666666655531 345567777777755554 334667777777
Q ss_pred HCCCCCChhhHHHHHHHHHcc
Q 046803 99 VSNISPSNYTFSAVIKSCAHL 119 (580)
Q Consensus 99 ~~g~~p~~~t~~~ll~a~~~~ 119 (580)
+.+.+++..-|..++.+|.+-
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 766777777777777776553
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.79 E-value=15 Score=32.88 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=32.5
Q ss_pred HHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 046803 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 408 (580)
.+..++.+...|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 131 ~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344444556677777777777788888888888887777777777
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.74 E-value=11 Score=21.64 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=18.9
Q ss_pred CCchHHHHHHHHHHhcCCCCcchHHHHHH
Q 046803 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSN 419 (580)
Q Consensus 391 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 419 (580)
|+.+.+..+|++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45667777777777777766666655443
No 386
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=64.47 E-value=1.7e+02 Score=29.69 Aligned_cols=63 Identities=10% Similarity=0.003 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
...|+.-|...|+..+|....+++---.-+....+-.++.+..+.|+-...+.+++..-+.|+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 456778888888888888877765321122335666788888888887777777776655553
No 387
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.27 E-value=1.3e+02 Score=28.24 Aligned_cols=180 Identities=13% Similarity=0.086 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHhccC----CC---hHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCC--CCHHHHHHHHHHHHhcCC
Q 046803 256 GNVSKAREIFDMMSE----LN---VIAWTAMISGYGMHGYGTEAVELFHRMRA---HGVR--PNNVTFVAVLSACAHAGL 323 (580)
Q Consensus 256 g~~~~A~~~~~~~~~----~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--pd~~t~~~ll~a~~~~g~ 323 (580)
.++++|..-|.+..+ +. .-+.-.||..+.+.|++++.++.|++|.. ..+. -...+.++++.-.+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666655542 11 12334466667777777777777776653 1111 123456666665555555
Q ss_pred HHHHHHHHHHhHHhc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc-------CC---C-C--CHHHHHHHHHH
Q 046803 324 VQEGHRVFASMRQEY----GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI-------GE---K-P--APAVWTAMLGA 386 (580)
Q Consensus 324 ~~~a~~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~---~-p--~~~~~~~ll~~ 386 (580)
.+.-..+|+.-.... +-..-..+-+-|...|...|.+.+-..++++.- +. + - -..+|..-+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 554444444332211 111112333456677777777777666663322 00 0 0 13456777788
Q ss_pred HHhcCCchHHHHHHHHHHhcCCC--CcchHHH----HHHHHHhcCChhHHHHHHH
Q 046803 387 CKMHKNFDLGVEVAEHLLSVEPE--NPGHYVM----LSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~----l~~~y~~~g~~~~a~~~~~ 435 (580)
|..+++-..-..+|++++..... .|...-. =+.+..+.|+|++|..-|=
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFF 255 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 255 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHH
Confidence 88888888888888888765522 2222211 2345667888888765443
No 388
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.10 E-value=9.4 Score=31.29 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=26.2
Q ss_pred HcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046803 82 SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC 116 (580)
Q Consensus 82 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 116 (580)
...|.-.+|..+|+.|++.|-+||. |+.|+.++
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999998885 77777654
No 389
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.06 E-value=53 Score=26.73 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 291 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
+..+-+..+....+.|+....-.-+.||.+.+++..|.++|+-++.+.| +....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHHH
Confidence 4555666666777899999999999999999999999999998875433 33345655543
No 390
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=63.51 E-value=2e+02 Score=30.28 Aligned_cols=177 Identities=11% Similarity=0.066 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC------CChHHHHHHH
Q 046803 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE------LNVIAWTAMI 280 (580)
Q Consensus 207 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li 280 (580)
..+|..-+.--...|+.+.+.-+++...-.. ..-...|--.+......|+.+-|..++....+ |.+....+.+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3466666766777788888777777665321 12223343344444444888888877765543 3333333333
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHhHHhcCCCCCHHHHHHHH----H
Q 046803 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGH---RVFASMRQEYGLLPGVEHHVCMV----D 352 (580)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~---~~~~~~~~~~~~~p~~~~~~~li----~ 352 (580)
. -..|++..|..+++...+.- |+.. .-..-+....+.|..+.+. +++..... |. -+......+. .
T Consensus 376 ~--e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~--~~-~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 376 E--ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE--GK-ENNGILEKLYVKFAR 448 (577)
T ss_pred H--HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc--cc-cCcchhHHHHHHHHH
Confidence 2 23679999999999988763 5543 2223344556677777777 33333221 11 1111111121 1
Q ss_pred -HHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC
Q 046803 353 -LFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHK 391 (580)
Q Consensus 353 -~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g 391 (580)
.+.-.++.+.|..++.++.+..|+ ...|..++..+..++
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 123468899999999888888875 666888888776665
No 391
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=63.20 E-value=16 Score=34.66 Aligned_cols=76 Identities=8% Similarity=0.073 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHH-HHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTA-MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
.|+..|...+.-.-+.|.+.+...++.+.+...| |+..|-. ----+..+++++.+..++.+.++++|++|..|...
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3555555555444455666777777767776677 4666643 22334567888888888888888888888776543
No 392
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.40 E-value=1.5e+02 Score=30.09 Aligned_cols=132 Identities=8% Similarity=0.008 Sum_probs=57.7
Q ss_pred HHHHHHHhCCCCChhh--hchHHHHHhccCChhHHHHHHccCCCCChh--hHHHHHHHHHcCCCccHHHHHHHHHHHCCC
Q 046803 27 VHAHLIVAGYGRSRSM--LTKLLSLVCDAGFITYAQRIFFCIPSPDSF--LFNTLIIRNSKANFSTDSLLFYRRMIVSNI 102 (580)
Q Consensus 27 ~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 102 (580)
+...+++.|..++... ..+.+...+..++.+-+.-+++.-..++.. .-.+.+...+..|+.+.+..++ +.|.
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~~~ 92 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL----DLGK 92 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH----HcCC
Confidence 4455556676665432 344444445566666555555443322221 1112344445566654433333 3332
Q ss_pred CCCh----hhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCCHHHHHHHHccC
Q 046803 103 SPSN----YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH--VQAALVNFYAKSNNVDVARKVFDRM 167 (580)
Q Consensus 103 ~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~ 167 (580)
..+. .-. +.+...+..|+.+ +.+.+++.|..++.. ...+.+...+..|+.+-+..+++.-
T Consensus 93 ~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 93 FADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred cccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 1111 111 1222233344443 444445556544322 1223344455566666666555543
No 393
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=61.59 E-value=1e+02 Score=32.20 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=31.7
Q ss_pred HHhhHhhhcCCHHHHHHHHHhccCC--ChH---HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 247 SLINMYARCGNVSKAREIFDMMSEL--NVI---AWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 247 ~li~~y~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
.|+.-|.+.+++++|..++..|.=. ... +.+.+.+.+.+..-.++....++.+..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 4666788888888888888888521 122 233334444444444444445554443
No 394
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.36 E-value=1.7e+02 Score=29.43 Aligned_cols=53 Identities=4% Similarity=-0.073 Sum_probs=34.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHhHH
Q 046803 283 YGMHGYGTEAVELFHRMRAHGVRPNNV--TFVAVLSACA--HAGLVQEGHRVFASMRQ 336 (580)
Q Consensus 283 ~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 336 (580)
+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34678888888888888876 555444 3334444443 35567788888887664
No 395
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.43 E-value=2.7e+02 Score=30.46 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhC
Q 046803 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220 (580)
Q Consensus 141 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 220 (580)
..++..+|+.+.-.|++++|-...-.|...+..-|--.+.-+...++......++ ....-..+...|-.++..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~- 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA- 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH-
Confidence 4567778888888888888888888877777777777777777766655433321 111111234455555555544
Q ss_pred CChHHHHH------------------HHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChH
Q 046803 221 GDIDLGRW------------------VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274 (580)
Q Consensus 221 ~~~~~a~~------------------~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 274 (580)
.+...-.+ +..++.+. ..+...-..|+..|...+++.+|...+-...++++.
T Consensus 468 ~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 468 SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 11111100 11111111 122234445899999999999999999888776543
No 396
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.98 E-value=15 Score=39.89 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=55.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 046803 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365 (580)
Q Consensus 286 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 365 (580)
+.++++.+.+.+...--| .++|..+-+.|-.+-|+.+.+.=..++ .....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 445666655544332211 134444556666666665443322221 22346778888877
Q ss_pred HHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046803 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 366 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
.- +.++ |..+|..|+.....+|+.+-|+..|++...
T Consensus 665 ~a-kkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 665 AA-KKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HH-HhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 76 3332 567788888888888888888887777654
No 397
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.59 E-value=1e+02 Score=29.16 Aligned_cols=87 Identities=9% Similarity=0.019 Sum_probs=39.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh----
Q 046803 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR---- 254 (580)
Q Consensus 179 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~---- 254 (580)
|.+++..++|.+++...-+-.+.--+..+...-.-|-.|.+.+.+..+.++-....+..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5666777777777665544433211112223333333455556655555555544443212222234444444432
Q ss_pred -cCCHHHHHHHH
Q 046803 255 -CGNVSKAREIF 265 (580)
Q Consensus 255 -~g~~~~A~~~~ 265 (580)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 34444444443
No 398
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.90 E-value=2.5e+02 Score=29.58 Aligned_cols=51 Identities=12% Similarity=0.228 Sum_probs=23.1
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCC--CHHHHHHHHHHHH-hcCCchHHHHHHHHH
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKP--APAVWTAMLGACK-MHKNFDLGVEVAEHL 403 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~ll~~~~-~~g~~~~a~~~~~~~ 403 (580)
.+.+.|.+.-|.++.+-.+...| |+.....+|..|+ +..+++-.+++++..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34445555555555522224444 2334444444442 334455555555444
No 399
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.53 E-value=77 Score=25.15 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888888776
No 400
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=57.45 E-value=32 Score=25.36 Aligned_cols=46 Identities=9% Similarity=0.025 Sum_probs=33.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 046803 285 MHGYGTEAVELFHRMRAHGVRPNN--VTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
...+.++|+..|+...+.-..|.. .++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888775333332 4677888888888888877664
No 401
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.99 E-value=27 Score=22.44 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=10.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 046803 280 ISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~ 301 (580)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444455444444443
No 402
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.75 E-value=84 Score=23.75 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=27.1
Q ss_pred hcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHH
Q 046803 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293 (580)
Q Consensus 254 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 293 (580)
..|+.+.|.++++.++ +....|..++.++...|+..-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4567777777777777 66667777777777777655443
No 403
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.67 E-value=2.8e+02 Score=29.67 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHhcCCC
Q 046803 393 FDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 393 ~~~a~~~~~~~~~~~p~ 409 (580)
+..|.+.++++.+.+..
T Consensus 525 ~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 525 LHLAKRYYDQASEEDSR 541 (552)
T ss_pred hHHHHHHHHHHHhcCch
Confidence 56777777777765543
No 404
>PRK11619 lytic murein transglycosylase; Provisional
Probab=56.49 E-value=3e+02 Score=30.04 Aligned_cols=377 Identities=8% Similarity=-0.063 Sum_probs=177.2
Q ss_pred HHhccCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHH--
Q 046803 49 LVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR-- 126 (580)
Q Consensus 49 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-- 126 (580)
.+.+..++....+ |..-+..+...-.....+....|+.++|....+.+-..|.. .......++..+.+.|.+....
T Consensus 108 ~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w 185 (644)
T PRK11619 108 ELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYL 185 (644)
T ss_pred HHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHH
Confidence 4445556666666 33222345545555666677777777777777776655533 3445666666666555443321
Q ss_pred HHHHHHHHhCC-----------CCc-hHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHH--HhCCChhHHH
Q 046803 127 AVHCHVFVSGY-----------DSD-LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY--EQNGFAKEAI 192 (580)
Q Consensus 127 ~~~~~~~~~g~-----------~~~-~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~--~~~g~~~~A~ 192 (580)
+=+..+...|- .++ ......++.++.+ ...+...+.... ++...-..++.++ ....+.+.|.
T Consensus 186 ~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~ 261 (644)
T PRK11619 186 ERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENAR 261 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHH
Confidence 11111111110 111 1111222222221 222222222221 1111111111111 1234456777
Q ss_pred HHHHHHHHC-CCCCChh--HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 193 GLFNLMRDF-GVNPDST--TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 193 ~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
.++...... +..+... ....+.......+...++...+....... .+......-+....+.++++.+...+..|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~ 339 (644)
T PRK11619 262 LMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLP 339 (644)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcC
Confidence 777765433 2222221 22222222222222445555554433222 233334444445557777777777777775
Q ss_pred C--CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHhHHhcCCCCCHH
Q 046803 270 E--LNV-IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEG-HRVFASMRQEYGLLPGVE 345 (580)
Q Consensus 270 ~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a-~~~~~~~~~~~~~~p~~~ 345 (580)
+ .+. .-.-=+..++...|+.++|...|+++.. .. +|-.++.+ .+.|..-.- ......-.....-.|
T Consensus 340 ~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~~~~~~~~--- 409 (644)
T PRK11619 340 MEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKPDSALTQGP--- 409 (644)
T ss_pred HhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCchhhhhccCh---
Confidence 3 121 1222345565667888888888777643 11 23333321 122211000 000000000000001
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC---CCCcchHHHHHHHHH
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE---PENPGHYVMLSNIYA 422 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~y~ 422 (580)
-..-+..+...|+..+|...+...+.. .+......+.......|..+.++....+....+ -.-|..|...+..++
T Consensus 410 -~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a 487 (644)
T PRK11619 410 -EMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYT 487 (644)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHH
Confidence 112345667889999999988665543 455666677777778899888888776543321 112345666777777
Q ss_pred hcCChhHHHHHHHHHHhCCCccC
Q 046803 423 LAGRMDRVEVVRNIMIQKGLKKH 445 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m~~~~~~~~ 445 (580)
+.-.++.+.-.--...+.++.+.
T Consensus 488 ~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 488 SGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHcCCCHHHHHHHHHHhcCCCCC
Confidence 66667766643333345666554
No 405
>PRK12798 chemotaxis protein; Reviewed
Probab=56.35 E-value=2.3e+02 Score=28.61 Aligned_cols=179 Identities=13% Similarity=0.142 Sum_probs=105.3
Q ss_pred cCCHHHHHHHHHhccC----CChHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHH
Q 046803 255 CGNVSKAREIFDMMSE----LNVIAWTAMISGYG-MHGYGTEAVELFHRMRAHGVRPN----NVTFVAVLSACAHAGLVQ 325 (580)
Q Consensus 255 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~ 325 (580)
.|+..+|.+.+..+.. +....+-.|+.+-. ...++.+|+.+|+...- ..|- .....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4677777777766653 33445556655433 44567888888887664 2333 234444455667888888
Q ss_pred HHHHHHHHhHHhcCCCCCHHHH-HHHHHHHHHcC---CHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 046803 326 EGHRVFASMRQEYGLLPGVEHH-VCMVDLFGRAG---LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401 (580)
Q Consensus 326 ~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 401 (580)
++..+-.....+|...|-...| ..++..+.+.+ ..+.-.+++ ..|.-.--..+|..+...-...|+.+.|....+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~l-s~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEIL-SFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHH-HhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8877776666666655643322 23333444333 233333333 332211125678888888899999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHh-----cCChhHHHHHHHHH
Q 046803 402 HLLSVEPENPGHYVMLSNIYAL-----AGRMDRVEVVRNIM 437 (580)
Q Consensus 402 ~~~~~~p~~~~~~~~l~~~y~~-----~g~~~~a~~~~~~m 437 (580)
+++.+... ...-...+..|.. ..+.+++.+.+..+
T Consensus 282 ~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 282 RALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 99887733 3334444555542 33455555555443
No 406
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.32 E-value=33 Score=26.30 Aligned_cols=52 Identities=6% Similarity=0.077 Sum_probs=32.1
Q ss_pred HhcCCchHHHHHHHHHHhcCCC----C-----cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPE----N-----PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+.|++..|.+.+.+..+.... . ..+...++.++...|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456666665555555432211 1 12334567778888999999888888765
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.12 E-value=52 Score=29.32 Aligned_cols=37 Identities=14% Similarity=-0.013 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC
Q 046803 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375 (580)
Q Consensus 339 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 375 (580)
...|+...|..++.++...|+.++|.+..+++...-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3446666666666666666666666666644444444
No 408
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.95 E-value=46 Score=27.92 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=43.3
Q ss_pred HHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 046803 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427 (580)
Q Consensus 361 ~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 427 (580)
+.|.++. +.++ ...............|++..|.++.+.++..+|+|...-...+++|...|.-
T Consensus 58 ~~A~~~v-~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYV-ELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHH-HHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 4556666 6654 2334444555667789999999999999999999988888888887766543
No 409
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=55.88 E-value=3e+02 Score=29.86 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCC-------hhHHHHHHHHHHHCCCCCChh
Q 046803 141 LHVQAALVNFYAKSNNVDVARKVFDRMP---DKSVVAWNSMISGYEQNGF-------AKEAIGLFNLMRDFGVNPDST 208 (580)
Q Consensus 141 ~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~ 208 (580)
..+| ++|--+.|+|++++|.++..+.. ++....+-..+..|+.+.+ -++...-|++..+.....|+.
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 3445 35666789999999999883322 2334556667777766532 235555666665543322543
No 410
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=55.50 E-value=5.2e+02 Score=32.54 Aligned_cols=148 Identities=10% Similarity=0.027 Sum_probs=87.0
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHCCC-CCChhhHHHHHH-HHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Q 046803 77 LIIRNSKANFSTDSLLFYRRMIVSNI-SPSNYTFSAVIK-SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154 (580)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 154 (580)
+..+-.+.+.+.+|+..+++-..... +--...+..++. .|+..+++|...-+..... .+..+++ -|-.....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~-qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQ-QILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHH-HHHHHHhh
Confidence 33455667888888888888311100 011223444444 7888899988777655311 1222332 34456778
Q ss_pred CCHHHHHHHHccCCCCC---hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH-HHHHHhCCChHHHHHHH
Q 046803 155 NNVDVARKVFDRMPDKS---VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV-LAACAQLGDIDLGRWVH 230 (580)
Q Consensus 155 g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~~~~~~a~~~~ 230 (580)
|+++.|...|+.+.+.+ ...++-++......|.+..++...+-.... ..+....+++. ..+--+.++++.....+
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999999998743 446777777666777777777655544432 22333333322 23334666777666665
Q ss_pred H
Q 046803 231 E 231 (580)
Q Consensus 231 ~ 231 (580)
.
T Consensus 1542 ~ 1542 (2382)
T KOG0890|consen 1542 S 1542 (2382)
T ss_pred h
Confidence 5
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.60 E-value=73 Score=25.28 Aligned_cols=27 Identities=19% Similarity=0.539 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRD 200 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 200 (580)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999998876
No 412
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.22 E-value=1.2e+02 Score=25.27 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHhHcC-CCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 341 LPGVEHHVCMVDLFGRAGL---LNEAYKFVKDVIG-EKPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 341 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
.++..+--.+.-++.+..+ ..+-+.++++..+ ..|+ ......|.-++.+.++++++.+..+.+++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3444444455566666544 4455666755554 3443 334456677888999999999999999999998643
No 413
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.28 E-value=86 Score=25.69 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 394 DLGVEVAEHLLS--VEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 394 ~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
+.+..+|..|.+ ++-..+..|...+..+...|++++|.++++.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 378888888875 4455677888889999999999999998875
No 414
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=52.51 E-value=41 Score=20.49 Aligned_cols=19 Identities=5% Similarity=0.062 Sum_probs=9.2
Q ss_pred HHHHHHHHhcCCchHHHHH
Q 046803 381 TAMLGACKMHKNFDLGVEV 399 (580)
Q Consensus 381 ~~ll~~~~~~g~~~~a~~~ 399 (580)
-.+.-.+-..|++++|+.+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3344444555555555555
No 415
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=52.37 E-value=1.3e+02 Score=29.08 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=37.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCCCHH---HHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPA---VWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
|.-.-.+.|++.+|.+.+++.++..|-.. +...|+.+|....-+.....++.+.-++.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44444567888888888877776666322 34467777776666666655555554444
No 416
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.26 E-value=2.2e+02 Score=26.88 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=75.3
Q ss_pred hCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHH----HHHHCCCCCChhHHHHHHHHHHhCCChH-HHH
Q 046803 153 KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN----LMRDFGVNPDSTTCVCVLAACAQLGDID-LGR 227 (580)
Q Consensus 153 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~a~ 227 (580)
+.+++++|.+++.+- ...+.+.|+...|-++-. -..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345566666655331 223445555544443332 2233455566655555555555443221 122
Q ss_pred HHHHHHH---HcC--CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046803 228 WVHEFIV---GQG--LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302 (580)
Q Consensus 228 ~~~~~~~---~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 302 (580)
++.+.++ +.+ ..-++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 2222222 222 1236677888889999999999999888665444444332233322223332222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 303 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
|...-..++ -|...+++..|...++...+.
T Consensus 141 ----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222222333 355567888888877766653
No 417
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=51.23 E-value=1.3e+02 Score=24.35 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHH-------hcCCCCcchH----HHHHHHHHhcCChhHHHHHHHHH
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLL-------SVEPENPGHY----VMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
..+..|..++...|++++++...++.+ +++.+.-..| ..-+.++...|+.++|.+.|+..
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 345566667777777777666666554 3444433333 34456777889999999988764
No 418
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=50.85 E-value=4e+02 Score=29.78 Aligned_cols=216 Identities=12% Similarity=0.060 Sum_probs=117.2
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCcHH-------HhhHHh-hHhhhcCCHHHHHHHHHhccC--------CChHHHHHHHH
Q 046803 218 AQLGDIDLGRWVHEFIVGQGLDVNVV-------LATSLI-NMYARCGNVSKAREIFDMMSE--------LNVIAWTAMIS 281 (580)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li-~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 281 (580)
....++.+|..+..++...-..|+.. .+++|- ......|+++.|.++-+...+ ..++.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678888888888877542222211 222221 122346788888887765442 45667778888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHH---HHH--HHHHhcCCH--HHHHHHHHHhHHhcCCC-C----CHHHHHH
Q 046803 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFV---AVL--SACAHAGLV--QEGHRVFASMRQEYGLL-P----GVEHHVC 349 (580)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~---~ll--~a~~~~g~~--~~a~~~~~~~~~~~~~~-p----~~~~~~~ 349 (580)
+..-.|++++|..+.++..+..-.-|...|. .+. ..+...|.. .+....|......+... | -.-.+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999888776532222333222 221 234556633 33333444433321111 1 1233334
Q ss_pred HHHHHHHcCCHHHHHHHHHhHc----CCCCCH-HH---HHHHHHHHHhcCCchHHHHHHHHHHhcCCCC--cchHH---H
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVI----GEKPAP-AV---WTAMLGACKMHKNFDLGVEVAEHLLSVEPEN--PGHYV---M 416 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~----~~~p~~-~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~---~ 416 (580)
+..++.+ ++.+..-....+ ...|.. .. +..|.......|+.+.|.....++..+.... ...|. .
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 444433332222 222332 11 2367778889999999999999887644221 12222 1
Q ss_pred HHH--HHHhcCChhHHHHHHHH
Q 046803 417 LSN--IYALAGRMDRVEVVRNI 436 (580)
Q Consensus 417 l~~--~y~~~g~~~~a~~~~~~ 436 (580)
++. .-...|+...+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222 23467888888777665
No 419
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.58 E-value=1.5e+02 Score=24.94 Aligned_cols=47 Identities=6% Similarity=0.200 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046803 274 IAWTAMISGYGMHGY-GTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320 (580)
Q Consensus 274 ~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 320 (580)
.+|..++.+..+..- ---+..+|.-|.+.+.+++..-|..++.+|.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 344445544433333 22334445555544455555555555555443
No 420
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=49.49 E-value=3.6e+02 Score=28.90 Aligned_cols=208 Identities=13% Similarity=0.054 Sum_probs=55.7
Q ss_pred hCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHH-HHHHH--hccC-----------CChHHHHHHHHHHH
Q 046803 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA-REIFD--MMSE-----------LNVIAWTAMISGYG 284 (580)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~--~~~~-----------~~~~~~~~li~~~~ 284 (580)
-.|++..+.+...... .|..+...+.+.+..+|-++.. ..-+. .+.+ .+...|..-+..+.
T Consensus 309 ~~~d~~~vL~~~~~~~-----~~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L~s~~~lW~vai~yL~ 383 (566)
T PF07575_consen 309 FEGDIESVLKEISSLF-----DDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYASSLMSHHSLWQVAIGYLS 383 (566)
T ss_dssp HTS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHHHHHT-TTTHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHc-----cchhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 3667776666654431 2334455566666666655510 00000 0000 12233444444443
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 046803 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 364 (580)
..++.. ....+.++..-.-.+.....-++..|.+.|..+.|.++.+.+-.+. -....|..-+.-+.++|+.....
T Consensus 384 ~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~---~~~~~~g~AL~~~~ra~d~~~v~ 458 (566)
T PF07575_consen 384 SCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL---LKEGRYGEALSWFIRAGDYSLVT 458 (566)
T ss_dssp S-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---------
T ss_pred HCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHCCCHHHHH
Confidence 333222 3344444443233455667788888888888888888887765431 11122333333344444443333
Q ss_pred HHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC--CCCcchHHHHHHHH--HhcCChhHHHHHHHHHHhC
Q 046803 365 KFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE--PENPGHYVMLSNIY--ALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 365 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y--~~~g~~~~a~~~~~~m~~~ 440 (580)
.+. + .++..|...|... ...+.+.+.... ......|..+-..| .+.|++.+|.+.+-.+.+.
T Consensus 459 ~i~------------~-~ll~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~ 524 (566)
T PF07575_consen 459 RIA------------D-RLLEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKS 524 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHH------------H-HHHHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCC
Confidence 333 2 2334444444321 111111111000 01122333333333 3558888888877777665
Q ss_pred CCccCCceeEEE
Q 046803 441 GLKKHVGYSTVE 452 (580)
Q Consensus 441 ~~~~~~~~s~~~ 452 (580)
++. |...|..
T Consensus 525 ~~~--Pk~f~~~ 534 (566)
T PF07575_consen 525 PIA--PKSFWPL 534 (566)
T ss_dssp ------------
T ss_pred CCC--cHHHHHH
Confidence 544 3445543
No 421
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.60 E-value=37 Score=32.35 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 315 (580)
-|+..|..-.+.|++++|+.++++..+.|+.--..||..-+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788899999999999999999999988876666665544
No 422
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=47.08 E-value=34 Score=32.48 Aligned_cols=52 Identities=12% Similarity=0.264 Sum_probs=44.8
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
..+.|+.++|..+|+.++.+.|.++.....++.......+.-+|.+.+-+..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 4678999999999999999999999999998888888788888887776543
No 423
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.94 E-value=40 Score=30.66 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=51.6
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
....++.+.+.+++.+++++-|.....|..++..-.+.|+.+.|.+.+++..+.+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 356789999999999999999999999999999999999999999999998876544
No 424
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.86 E-value=2.8e+02 Score=29.67 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=66.8
Q ss_pred HHcCCHHHHHHHHHhHcCCCC-C------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 046803 355 GRAGLLNEAYKFVKDVIGEKP-A------PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427 (580)
Q Consensus 355 ~~~g~~~~A~~~~~~~~~~~p-~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 427 (580)
.+..++..+.+.|...+..-| | ......|--.|....+.|.|.++++++.+.+|.++-.-..+..+....|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 466788888888877774443 2 223566777778888999999999999999998888888888888888999
Q ss_pred hHHHHHHHHHHhC
Q 046803 428 DRVEVVRNIMIQK 440 (580)
Q Consensus 428 ~~a~~~~~~m~~~ 440 (580)
++|..........
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 9998887776554
No 425
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.68 E-value=3.4e+02 Score=30.30 Aligned_cols=153 Identities=13% Similarity=0.054 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHhCCCC-------Chh-hhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHH
Q 046803 23 PLQQVHAHLIVAGYGR-------SRS-MLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFY 94 (580)
Q Consensus 23 ~~~~~~~~~~~~g~~~-------~~~-~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 94 (580)
-|+.+.+++.+.|..- |+. -++.-| ..|+++.|++.-..+.+ ...|..|.....+.|+.+-|.-.|
T Consensus 622 vGqaiIaYLqKkgypeiAL~FVkD~~tRF~LaL----e~gnle~ale~akkldd--~d~w~rLge~Al~qgn~~IaEm~y 695 (1202)
T KOG0292|consen 622 VGQAIIAYLQKKGYPEIALHFVKDERTRFELAL----ECGNLEVALEAAKKLDD--KDVWERLGEEALRQGNHQIAEMCY 695 (1202)
T ss_pred ccHHHHHHHHhcCCcceeeeeecCcchheeeeh----hcCCHHHHHHHHHhcCc--HHHHHHHHHHHHHhcchHHHHHHH
Confidence 3678888888888631 211 223334 67799999988877764 457999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhH
Q 046803 95 RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174 (580)
Q Consensus 95 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~ 174 (580)
++... |..|--.|.-.|+.++-.++...+..+ .|. +......+| .|+.++=.++++.....+..-
T Consensus 696 Q~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r---~D~-~~~~qnalY--l~dv~ervkIl~n~g~~~lay 760 (1202)
T KOG0292|consen 696 QRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR---NDA-TGQFQNALY--LGDVKERVKILENGGQLPLAY 760 (1202)
T ss_pred HHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh---hhh-HHHHHHHHH--hccHHHHHHHHHhcCcccHHH
Confidence 88654 333333455568887766655544332 122 111122223 588999899988776644332
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC
Q 046803 175 WNSMISGYEQNGFAKEAIGLFNLMRDF 201 (580)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 201 (580)
..+ ..+|.-++|.++.++....
T Consensus 761 lta-----~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 761 LTA-----AAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHH-----hhcCcHHHHHHHHHhhccc
Confidence 222 3468888899888888664
No 426
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.73 E-value=71 Score=20.92 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=15.4
Q ss_pred cCCCccHHHHHHHHHHHCCCCCChhhHHHHH
Q 046803 83 KANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113 (580)
Q Consensus 83 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 113 (580)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555554444444443
No 427
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.66 E-value=1.6e+02 Score=25.88 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=11.2
Q ss_pred HHHHHcCCHHHHHHHHHhHcC
Q 046803 352 DLFGRAGLLNEAYKFVKDVIG 372 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~ 372 (580)
-.|.+.|.+++|.+++++.++
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555666666665544444
No 428
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.16 E-value=5.2e+02 Score=29.22 Aligned_cols=261 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHH--
Q 046803 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRD-- 200 (580)
Q Consensus 123 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 200 (580)
+.+..+=..+.+.-...|+..-..++..=...-.+++...++.+-.. |..|+..|...|+.++|++++.+..+
T Consensus 460 ~~~~~IDttLlk~Yl~~n~~~v~~llrlen~~c~vee~e~~L~k~~~-----y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 460 DILELIDTTLLKCYLETNPGLVGPLLRLENNHCDVEEIETVLKKSKK-----YRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhhhhhccCCCcchHHHHHHHHhccc-----HHHHHHHHHhccchHHHHHHHHHHhccc
Q ss_pred -CCCCCChhHHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCCCcHHHhhH------------HhhHhhhcCCHHHHHHHH
Q 046803 201 -FGVNPDSTTCVCVLAACAQLGDI--DLGRWVHEFIVGQGLDVNVVLATS------------LINMYARCGNVSKAREIF 265 (580)
Q Consensus 201 -~g~~p~~~t~~~ll~a~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~------------li~~y~~~g~~~~A~~~~ 265 (580)
..-.--...+--++.-+...+.. +...++-....+........+++. .+--|.+....+-+...+
T Consensus 535 ~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YL 614 (877)
T KOG2063|consen 535 SDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYL 614 (877)
T ss_pred cccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHH
Q ss_pred HhccC----CChHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 046803 266 DMMSE----LNVIAWTAMISGYGMHGY-GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340 (580)
Q Consensus 266 ~~~~~----~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 340 (580)
+.+.. .+..-.+.++..|+..=+ ......--++..+.+ |..-+..+....+.=....+++..
T Consensus 615 E~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~-------~rekl~~~l~~s~~Y~p~~~L~~~------ 681 (877)
T KOG2063|consen 615 EHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETT-------VREKLLDFLESSDLYDPQLLLERL------ 681 (877)
T ss_pred HHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhh-------HHHHHHHHhhhhcccCcchhhhhc------
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 341 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
|....|.-..-.++|.|+-++|+.++ .-..++++.|........+.++.+...|..+...
T Consensus 682 -~~~~l~ee~aill~rl~khe~aL~Iy-------------------v~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~ 741 (877)
T KOG2063|consen 682 -NGDELYEERAILLGRLGKHEEALHIY-------------------VHELDDIDAAESYCLPQYESDKTNKEIYLTLLRI 741 (877)
T ss_pred -cchhHHHHHHHHHhhhhhHHHHHHHH-------------------HHHhcchhHHHHHHHHhccCCCcccHHHHHHHHH
Q ss_pred H
Q 046803 421 Y 421 (580)
Q Consensus 421 y 421 (580)
|
T Consensus 742 ~ 742 (877)
T KOG2063|consen 742 Y 742 (877)
T ss_pred H
No 429
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.97 E-value=3.7e+02 Score=27.42 Aligned_cols=98 Identities=14% Similarity=0.030 Sum_probs=52.9
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhc---cCCChHHHHHHH
Q 046803 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM---SELNVIAWTAMI 280 (580)
Q Consensus 204 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li 280 (580)
..+......++..+ .|+...+..+++.+...+...+ .+...+++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 34444444444433 6777777777776654321111 12222222221 112223344455
Q ss_pred HHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046803 281 SGYGM---HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319 (580)
Q Consensus 281 ~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 319 (580)
.++.+ .++.+.|+.++.+|.+.|..|....-..+..++-
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 55554 4788999999999999888877555444444443
No 430
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=43.40 E-value=2.3e+02 Score=27.25 Aligned_cols=197 Identities=10% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHhCCCCChhhhchHHHHHhccC-ChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChh
Q 046803 29 AHLIVAGYGRSRSMLTKLLSLVCDAG-FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNY 107 (580)
Q Consensus 29 ~~~~~~g~~~~~~~~~~ll~~~~~~~-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 107 (580)
+.++..|..|....-..+=..+.+.| ...-|.++|.+-. +...-|.+|+++.+.+.-+.-+++| +|+..
T Consensus 155 al~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~--~Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkr 224 (412)
T KOG2297|consen 155 ALLLSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWL--VEKDINDLISSLRKGKMDDRLMEFF--------PPNKR 224 (412)
T ss_pred HHHHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHH--hhccHHHHHHHHHhcChHhHHHHhc--------CCcch
Q ss_pred hHHHHHHHHHccC--------------------------------ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Q 046803 108 TFSAVIKSCAHLS--------------------------------ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155 (580)
Q Consensus 108 t~~~ll~a~~~~~--------------------------------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 155 (580)
|-.....-+...| .+++......+-.+..--|++.+...+=+......
T Consensus 225 s~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsav 304 (412)
T KOG2297|consen 225 SVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAV 304 (412)
T ss_pred hHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHH
Q ss_pred CHHHHHHHHccCCCCChhHHHHHHHHHHhCCChh---------------HHHHHHHHHHHCCCCCChhHHHHHHHHHHhC
Q 046803 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK---------------EAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220 (580)
Q Consensus 156 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~---------------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 220 (580)
+|.+-.++..+-.-+..-.|..|+.+++.+|+.+ .-++.|.+....=.+.|.-+=-.++..|-..
T Consensus 305 eWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~g 384 (412)
T KOG2297|consen 305 EWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEG 384 (412)
T ss_pred hhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Q ss_pred CChHHHHHHHHHHHH
Q 046803 221 GDIDLGRWVHEFIVG 235 (580)
Q Consensus 221 ~~~~~a~~~~~~~~~ 235 (580)
.....-...+++|.+
T Consensus 385 h~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 385 HVAKGKSVFLEQMKK 399 (412)
T ss_pred cccccHHHHHHHHHH
No 431
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.91 E-value=2.9e+02 Score=28.95 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=13.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q 046803 177 SMISGYEQNGFAKEAIGLFNLMR 199 (580)
Q Consensus 177 ~li~~~~~~g~~~~A~~~~~~m~ 199 (580)
.++.-|.+.++.++|+.++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 45555666666666666665553
No 432
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=42.83 E-value=39 Score=34.29 Aligned_cols=104 Identities=15% Similarity=0.055 Sum_probs=69.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHc
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL-SACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRA 357 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 357 (580)
..-+...+.++.|..++.+.++ +.||...|-..= .++.+.+++..|..=+..+.+ ..|+ ...|-.=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhH
Confidence 3445566788999999999988 577766554443 678888888888877776664 2343 33333334445556
Q ss_pred CCHHHHHHHHHhHcCCCCCHHHHHHHHHHHH
Q 046803 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388 (580)
Q Consensus 358 g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~ 388 (580)
+.+.+|+..|+......|+..-....+.-|-
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 6777888888666677787665555555553
No 433
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=42.59 E-value=3.1e+02 Score=26.12 Aligned_cols=112 Identities=13% Similarity=0.014 Sum_probs=51.8
Q ss_pred CHHHHHHHHccCCCCC-hhHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC-------Ch
Q 046803 156 NVDVARKVFDRMPDKS-VVAWNSMISGYEQ----NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG-------DI 223 (580)
Q Consensus 156 ~~~~A~~~f~~~~~~~-~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-------~~ 223 (580)
+..+|.+.|+...+.+ ......|...|.. ..+..+|...|++.-+.|..+...+...+...+.... +.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 3555555555444332 2233334444433 2256667777777766664433222333333332221 22
Q ss_pred HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh----cCCHHHHHHHHHhccC
Q 046803 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYAR----CGNVSKAREIFDMMSE 270 (580)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~ 270 (580)
..|...+.++-..+ +......|..+|.. ..+.++|...|....+
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 35666666665555 22333333333322 3356666666665543
No 434
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.51 E-value=56 Score=22.82 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=9.4
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 046803 279 MISGYGMHGYGTEAVELFHRM 299 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m 299 (580)
.|.+|.+.|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444444
No 435
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.39 E-value=1.5e+02 Score=24.28 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 046803 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236 (580)
Q Consensus 190 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 236 (580)
|..+-++....-.+.|++...-..++||.+.+++..|..+++-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444555555667888888888888998888988888888887744
No 436
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.38 E-value=1.5e+02 Score=22.46 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHH
Q 046803 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191 (580)
Q Consensus 125 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 191 (580)
+.+++...+..|+- +......+-..-...|+.+.|+++++.++ +....|...++++-..|.-.-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 34555666666532 22222222222224577777777777777 6667777777777776665444
No 437
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=42.35 E-value=2.8e+02 Score=29.76 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=23.1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHh
Q 046803 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267 (580)
Q Consensus 206 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 267 (580)
+.....-++..|.+.|-.+.+..+.+.+-..-+ ...-|..-+..+.++|+......+-+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444555566666666666666666654443321 122344445556666665555444433
No 438
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.33 E-value=4.2e+02 Score=27.39 Aligned_cols=319 Identities=10% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCC---------
Q 046803 98 IVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--------- 168 (580)
Q Consensus 98 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--------- 168 (580)
+..+..............-...+.++...+....+...|.....+.+|.-+..|.+.|....-..+=+-..
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPG 88 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhcccc
Q ss_pred --------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHH-----HHHHHHhCCChHHHHHHHHHHHH
Q 046803 169 --------DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVC-----VLAACAQLGDIDLGRWVHEFIVG 235 (580)
Q Consensus 169 --------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~ 235 (580)
..+.+.+....-.|.....+.+|+++....... +.|=...+.. ....+......++|..++..+.+
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~ 167 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAE 167 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred c--CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 046803 236 Q--GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA 313 (580)
Q Consensus 236 ~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 313 (580)
. .......--+.=.+...+.+....|+.-|... .+....-.--+.+|.+..+..-+..-.+.... +.-|...+..
T Consensus 168 ~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a-~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn--~a~~s~~~l~ 244 (696)
T KOG2471|consen 168 IEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTA-DLKLELQLYKVRFLLQTRNLKLAKREVKHVMN--IAQDSSMALL 244 (696)
T ss_pred HHHhhhccccccccchhhhcccCCcchhcccchhh-ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhh--hcCCCcHHHH
Q ss_pred HHH-HHHhcCCHHHHHHHHHHhHHhcCCCCCHH---H--------HHHHHHHHHHcCCHHHHHHHHHhHc---------C
Q 046803 314 VLS-ACAHAGLVQEGHRVFASMRQEYGLLPGVE---H--------HVCMVDLFGRAGLLNEAYKFVKDVI---------G 372 (580)
Q Consensus 314 ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~--------~~~li~~~~~~g~~~~A~~~~~~~~---------~ 372 (580)
|=+ -+.-.|++..|.+++... ++.-..- + ||.|.-...+.|.+.-+..+|.+++ +
T Consensus 245 LKsq~eY~~gn~~kA~KlL~~s----ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 245 LKSQLEYAHGNHPKAMKLLLVS----NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHhcchHHHHHHHHhc----ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred CCCCH----------HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046803 373 EKPAP----------AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 373 ~~p~~----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 424 (580)
++|.. .+.....-.|...|++-.|.+.|.+.....-.+|..|..|+.+|...
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.31 E-value=40 Score=32.09 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhH
Q 046803 74 FNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTF 109 (580)
Q Consensus 74 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 109 (580)
||..|..-.+.||+++|+.++++..+.|+.--..||
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 445555566666666666666666555554333333
No 440
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=41.30 E-value=11 Score=26.51 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=16.6
Q ss_pred ceEEeeCCCccccccCccccC
Q 046803 556 REIIVRDRLRFHHFKRGSCSC 576 (580)
Q Consensus 556 ~~~~~~d~~~~h~~~~g~csc 576 (580)
+.|=+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 447788999999999998653
No 441
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.06 E-value=1.5e+02 Score=24.34 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChhHHHHHHH
Q 046803 394 DLGVEVAEHLLSVE--PENPGHYVMLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 394 ~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 435 (580)
+...++|..|.+.+ ..-+..|...+..+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566777776543 4556678888888899999999998886
No 442
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.38 E-value=1.8e+02 Score=29.39 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhHcCCC--------C--CHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 348 VCMVDLFGRAGLLNEAYKFVKDVIGEK--------P--APAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 348 ~~li~~~~~~g~~~~A~~~~~~~~~~~--------p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
-.|++..+-.|++..|++.+ +-+... | ...++.-+.-+|...+++.+|++.|..++
T Consensus 126 igLlRvh~LLGDY~~Alk~l-~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVL-ENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHh-hccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777 444221 1 23345556666666666777776666654
No 443
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.97 E-value=3.6e+02 Score=26.11 Aligned_cols=82 Identities=16% Similarity=0.041 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 046803 324 VQEGHRVFASMRQEYGL---LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400 (580)
Q Consensus 324 ~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 400 (580)
.++|.+.|+.......- ..+......+.....+.|..++-..++ +.....++...-..++.+.....+.+...+++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~-~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLW-ELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHH-HHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHH-HHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 56788888888753111 335556666777777888866655555 55555567777888899988889999889999
Q ss_pred HHHHhc
Q 046803 401 EHLLSV 406 (580)
Q Consensus 401 ~~~~~~ 406 (580)
+.++.-
T Consensus 225 ~~~l~~ 230 (324)
T PF11838_consen 225 DLLLSN 230 (324)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 998874
No 444
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.86 E-value=3.6e+02 Score=26.10 Aligned_cols=86 Identities=9% Similarity=0.051 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHcCC----CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-CChHHHHHHHHHHHhcCChHHHHHHHH
Q 046803 223 IDLGRWVHEFIVGQGL----DVNVVLATSLINMYARCGNVSKAREIFDMMSE-LNVIAWTAMISGYGMHGYGTEAVELFH 297 (580)
Q Consensus 223 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 297 (580)
.+.+.+.+......+. ..++.....+.....+.|+.+.-..+++.... ++......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 3466667777666421 33555556666666777776665555555543 455666777777777777777777777
Q ss_pred HHHhCC-CCCCH
Q 046803 298 RMRAHG-VRPNN 308 (580)
Q Consensus 298 ~m~~~g-~~pd~ 308 (580)
.....+ +++..
T Consensus 226 ~~l~~~~v~~~d 237 (324)
T PF11838_consen 226 LLLSNDKVRSQD 237 (324)
T ss_dssp HHHCTSTS-TTT
T ss_pred HHcCCcccccHH
Confidence 776643 44433
No 445
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.71 E-value=1.1e+02 Score=20.05 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=16.4
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhHHHHHH
Q 046803 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214 (580)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 214 (580)
+.|...++..++++|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555544444
No 446
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=38.72 E-value=86 Score=23.55 Aligned_cols=61 Identities=10% Similarity=0.145 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccH
Q 046803 25 QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTD 89 (580)
Q Consensus 25 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 89 (580)
..|...+++.|+-.+ .....+- +..-+.+.|.++++..|.++..+|.++..++-..|...-
T Consensus 19 ~~v~~~L~~~~Vlt~-~~~e~I~---~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 19 KYLWDHLLSRGVFTP-DMIEEIQ---AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHHHhcCCCCH-HHHHHHH---cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 446666666664322 2222222 122367778888888888888888888888777665443
No 447
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.06 E-value=3e+02 Score=24.69 Aligned_cols=29 Identities=14% Similarity=0.017 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMRAH 302 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 302 (580)
...+.++..+...|+++.|-+.|.-+...
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 34566777777777777777777777764
No 448
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.90 E-value=2.3e+02 Score=23.22 Aligned_cols=58 Identities=9% Similarity=0.112 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKD 369 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 369 (580)
.-|..+--.|+..-+ .+.++|..|..+ |+-. -...|......+...|++++|.++|+.
T Consensus 66 ~RylkiWi~ya~~~~--~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 66 ERYLKIWIKYADLSS--DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHTTBS--HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334444334444333 778888888754 5544 366777788888888888888888854
No 449
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.78 E-value=4.4e+02 Score=26.55 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCC------CChhHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046803 142 HVQAALVNFYAKSNNVDVARKVFDRMPD------KSVVAWNSMISGYEQNGFAKEAIGLFNLMRD 200 (580)
Q Consensus 142 ~~~~~li~~y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 200 (580)
....-+.+.|..||+++.|.+.|.+..+ ..+..|-.+|..-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3566788889999999999999988543 1334677777777888888888877777665
No 450
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.34 E-value=99 Score=21.57 Aligned_cols=30 Identities=10% Similarity=0.213 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 046803 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336 (580)
Q Consensus 307 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 336 (580)
|..--..++.++...|++++|.++.+.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444556666666666666666665543
No 451
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=36.94 E-value=79 Score=24.10 Aligned_cols=58 Identities=9% Similarity=0.123 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHHHHHHcCCC
Q 046803 25 QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86 (580)
Q Consensus 25 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 86 (580)
..|...+++.|+-.+. .+..+- +..-+.+.+.++++.++.+...+|..+..++-..+.
T Consensus 23 ~~v~~~L~~~gvlt~~-~~~~I~---~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 23 DELLIHLLQKDILTDS-MAESIM---AKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHcCCCCHH-HHHHHH---cCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 3456666666644322 222222 122366777777777777777777777777765443
No 452
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.75 E-value=40 Score=27.77 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=25.3
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 046803 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217 (580)
Q Consensus 182 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 217 (580)
.-..|.-..|-.+|++|++.|-+||. |..|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456677899999999999988885 55665543
No 453
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.56 E-value=3.8e+02 Score=25.51 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=86.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChh-------HHHHHHHHHHhCCChHHHHHHHHH----HHHcCCCCcHHHhh
Q 046803 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDST-------TCVCVLAACAQLGDIDLGRWVHEF----IVGQGLDVNVVLAT 246 (580)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~ 246 (580)
+.+-..+.+++++|+..+.+....|+..|.. |...+...|...|+...-.+.... |.+..-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3444556777888888888887777766543 444566667777765544333222 22222233455566
Q ss_pred HHhhHhhhc-CCHHHHHHHHHhccC---C-C-----hHHHHHHHHHHHhcCChHHHHHHHHH----HHhCCCCCCHHHHH
Q 046803 247 SLINMYARC-GNVSKAREIFDMMSE---L-N-----VIAWTAMISGYGMHGYGTEAVELFHR----MRAHGVRPNNVTFV 312 (580)
Q Consensus 247 ~li~~y~~~-g~~~~A~~~~~~~~~---~-~-----~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~pd~~t~~ 312 (580)
+|+..+... ..++.-..+.....+ + + ...-.-+|..+.+.|.+.+|+.+... +.+..-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 666665443 345555555554432 1 1 11223467888899999999876654 44445566655544
Q ss_pred HHHH-HHHhcCCHHHHHHHHHH
Q 046803 313 AVLS-ACAHAGLVQEGHRVFAS 333 (580)
Q Consensus 313 ~ll~-a~~~~g~~~~a~~~~~~ 333 (580)
.+=+ +|-...++.++..-+..
T Consensus 169 llESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHH
Confidence 3322 44444555544444433
No 454
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=36.29 E-value=1.3e+02 Score=30.53 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=27.8
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 372 GEKPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 372 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
+..|. ..+...-+..+.+++++..|..+.+++++++|..
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 44443 3456777788889999999999999999998863
No 455
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=36.22 E-value=1.8e+02 Score=30.09 Aligned_cols=90 Identities=9% Similarity=0.134 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC--------CcchH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE--------NPGHY 414 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~ 414 (580)
++..|-..+.-|...+++++|.++. +..+ +...|..|......+.+..-++.+|..+.+.+.- -+.--
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLC-rfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske 647 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLC-RFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKE 647 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHH-Hhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHH
Confidence 3445666667778888888888888 6554 4567888888878888887777777776654311 11222
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 046803 415 VMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 415 ~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
..++....-.|+..+|..++..
T Consensus 648 ~~mA~~~l~~G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 648 EQMAENSLMLGRMLEAETILLH 669 (737)
T ss_pred HHHHHHHHHhccchhhhHHHHh
Confidence 3455555566777777776653
No 456
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=35.56 E-value=2.5e+02 Score=23.06 Aligned_cols=51 Identities=10% Similarity=-0.026 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHH-HHHHHHHHhcCCchHHH
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW-TAMLGACKMHKNFDLGV 397 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~ 397 (580)
+..++.-++.=.|..++|.+++ ...+..+.-... .-++..|....+.++..
T Consensus 68 cvEAlAAaLyI~G~~~~A~~lL-~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~ 119 (127)
T PF04034_consen 68 CVEALAAALYILGFKEQAEELL-SKFKWGHTFLELNKELLEAYAKCKTSEEVI 119 (127)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3344444444555555555555 333333332222 23444444444443333
No 457
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=35.55 E-value=5e+02 Score=26.49 Aligned_cols=45 Identities=2% Similarity=-0.158 Sum_probs=21.7
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHH
Q 046803 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYE 183 (580)
Q Consensus 139 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 183 (580)
++..+....+..+.+.+..+....+...+...+...-.+.+.++.
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 344455556666665555555544444444444433333334433
No 458
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=35.12 E-value=3.3e+02 Score=24.29 Aligned_cols=57 Identities=9% Similarity=0.140 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCC--------------CCcHHHhhHHhhHhhhcCCHHHHHHHHHh
Q 046803 211 VCVLAACAQLGDIDLGRWVHEFIVGQGL--------------DVNVVLATSLINMYARCGNVSKAREIFDM 267 (580)
Q Consensus 211 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 267 (580)
.+++..|.+..++.+++.+++.+.+..+ .+.-.+.|.....+.+.|.+|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4566677777888888888887766432 23345566667777777777777777764
No 459
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.05 E-value=2e+02 Score=24.30 Aligned_cols=46 Identities=15% Similarity=0.077 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC
Q 046803 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221 (580)
Q Consensus 176 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 221 (580)
..++..+.+.+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444455555555555555555555544444445444444444444
No 460
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=34.83 E-value=1.4e+02 Score=28.19 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+=.++.+.++++.|....++.+.++|+++.-..--+-+|.+.|...-|.+-++...+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 4445677778888888888888888888887777788888888888888888777554
No 461
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=34.30 E-value=7.7e+02 Score=28.31 Aligned_cols=254 Identities=10% Similarity=-0.037 Sum_probs=142.3
Q ss_pred HHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc
Q 046803 61 RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140 (580)
Q Consensus 61 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 140 (580)
.+.+.+..+|...-...+..+.+.+. .+++..+...+.. +|...=...+.++...+........+..+++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 33444456677666666777777665 3455555555532 2333333444444443221111223333333 256
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhC
Q 046803 141 LHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220 (580)
Q Consensus 141 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 220 (580)
..+-.+.+..+...+.-+ ...+...+..+|...-...+.++.+.+..+. +.... -.+|...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 666666666666543211 2344555666777666666777766655432 22222 245666666666777776
Q ss_pred CChHH-HHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHH-HHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 046803 221 GDIDL-GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR-EIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298 (580)
Q Consensus 221 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 298 (580)
+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.++...+. +++...+..
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 65433 3344444443 456778888888888888766553 34444555666566666777777765 456666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 046803 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336 (580)
Q Consensus 299 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 336 (580)
+.+ .|+...=...+.++.+......+...+..+.+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 664 45666656666777665434456666666654
No 462
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.77 E-value=4.6e+02 Score=25.57 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHh
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKD 369 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~ 369 (580)
+.....-|++.|+.+.|++.+++
T Consensus 107 ~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHH
Confidence 33344455555555555555543
No 463
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=33.61 E-value=2.2e+02 Score=25.48 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH-HHHHHhcCChhHHHHHHHHH
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML-SNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~y~~~g~~~~a~~~~~~m 437 (580)
.+.++..|...||++.|-++|.-++...+-|....-.+ +.++.+.+.-....+.++.|
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 44555566666666666666666665554444333323 33344444443333444444
No 464
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.18 E-value=40 Score=32.64 Aligned_cols=116 Identities=13% Similarity=0.055 Sum_probs=76.2
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCCchHHHH
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA-VWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~ 398 (580)
..|.++.|.+.|...++ --++....|..-.+++.+.++...|+.=+..++.+.||.. -|-.=..+-+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 45778888888887764 2233466666667778888888888888877777777633 34444455667788999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
.++.+.+++-+ ..+-..|-...-+.+..++-...+++.+
T Consensus 204 dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 204 DLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 99988887743 2333344445555555555555555444
No 465
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.61 E-value=5.3e+02 Score=25.99 Aligned_cols=90 Identities=10% Similarity=0.069 Sum_probs=57.2
Q ss_pred HHhhHHhhHhhhcCCHHHHHHHHHhccC------CChHHHHHHHHHHHhcCChHHHHHHHHHHHhC---------CCCCC
Q 046803 243 VLATSLINMYARCGNVSKAREIFDMMSE------LNVIAWTAMISGYGMHGYGTEAVELFHRMRAH---------GVRPN 307 (580)
Q Consensus 243 ~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~pd 307 (580)
..+.-+.+-|..||+++.|.+.|.+..+ .-+..|-.+|..-...|+|........+.... .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3456677889999999999999988653 23446667777777778888777777666543 12233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 308 NVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 308 ~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
...+..+...+. +++..|.+.|-..
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 334444444333 3666666655544
No 466
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.43 E-value=2.2e+02 Score=26.51 Aligned_cols=17 Identities=6% Similarity=0.100 Sum_probs=6.8
Q ss_pred HHhcCCHHHHHHHHHHh
Q 046803 318 CAHAGLVQEGHRVFASM 334 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~ 334 (580)
|.+.|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 33334444444444333
No 467
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=32.41 E-value=1.5e+02 Score=22.74 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=28.1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCccCCcccccc
Q 046803 464 DKSHPNTNEIYQYLDELMGRCREAGYVPESESAMH 498 (580)
Q Consensus 464 ~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~ 498 (580)
...||..........++.....+.|..|....-+.
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl~ 91 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKLA 91 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcc
Confidence 56899888888888888888889999998765544
No 468
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.75 E-value=2e+02 Score=24.97 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=26.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCCh
Q 046803 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223 (580)
Q Consensus 177 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 223 (580)
.++..+...+..-.|.++++.+.+.+..++..|....|..+...|-+
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34444444445555666666666665555555655555555555543
No 469
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.66 E-value=2.4e+02 Score=23.81 Aligned_cols=61 Identities=8% Similarity=-0.044 Sum_probs=31.7
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Q 046803 95 RRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156 (580)
Q Consensus 95 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 156 (580)
..+.+.|++++.. =..++..+...++.-.|..+|..+.+.+...+..|--.-++.+...|-
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3444455554432 233455555555556667777777666655544433334455555553
No 470
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.30 E-value=7.4e+02 Score=27.23 Aligned_cols=119 Identities=15% Similarity=0.054 Sum_probs=69.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCC
Q 046803 282 GYGMHGYGTEAVELFHRMRAHGVRPNN--VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359 (580)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 359 (580)
++..-|+-++|..+.++|.... .|-. .-..++..+|+-.|+.....+++.-... ....|+.-+....-++.-..+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecC
Confidence 3445567778888888887643 2221 1233455577777777777777766553 334455555555555666667
Q ss_pred HHHHHHHHHhHcCC--CCCHH--HHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046803 360 LNEAYKFVKDVIGE--KPAPA--VWTAMLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 360 ~~~A~~~~~~~~~~--~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
++....+. +.+.. .|.+. +-.+|.-+|.-.|+ .+|+.+++-+..
T Consensus 587 p~~~~s~V-~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 587 PEQLPSTV-SLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhhchHHH-HHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 77666666 55532 23222 22344455665554 567777777665
No 471
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.12 E-value=2.4e+02 Score=21.48 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=7.7
Q ss_pred hcCChHHHHHHHHHH
Q 046803 285 MHGYGTEAVELFHRM 299 (580)
Q Consensus 285 ~~g~~~~A~~~~~~m 299 (580)
+.|++.+|.+.+.+.
T Consensus 10 ~~~dy~~A~d~L~~~ 24 (94)
T PF12862_consen 10 RSGDYSEALDALHRY 24 (94)
T ss_pred HcCCHHHHHHHHHHH
Confidence 455555555444443
No 472
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.11 E-value=4.3e+02 Score=24.47 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=16.3
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 046803 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240 (580)
Q Consensus 205 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 240 (580)
|.+.....++..|. .+++++|.+++.++-+.|+.|
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 44444444444432 234555555555555555444
No 473
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.27 E-value=2.2e+02 Score=24.76 Aligned_cols=58 Identities=7% Similarity=-0.059 Sum_probs=26.0
Q ss_pred HCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 046803 99 VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157 (580)
Q Consensus 99 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 157 (580)
..|++++..-. .++..+....+.-.|.++++.+.+.+...+..|--.-++.+.+.|-+
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34544433322 33333333344445566666666555444444333334445555443
No 474
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.96 E-value=6.5e+02 Score=26.13 Aligned_cols=212 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHccCCCCC----------hhHHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCC--------hhHHHHHHHHHH
Q 046803 158 DVARKVFDRMPDKS----------VVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVNPD--------STTCVCVLAACA 218 (580)
Q Consensus 158 ~~A~~~f~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~--------~~t~~~ll~a~~ 218 (580)
|+|+...++.++.| ......++.+-.-.|++.+|++-..+|.+- .-.|. ...-..+..-|.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred hCCChHHHHHHHHHHHHcCCCCcHHHh--hHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHH----------HHhc
Q 046803 219 QLGDIDLGRWVHEFIVGQGLDVNVVLA--TSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISG----------YGMH 286 (580)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~----------~~~~ 286 (580)
..+-++.|+.-|....+.--..|...+ ..+.-.|.+.|+.++-.++++.+..+|..++.+-..- ....
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q ss_pred CChHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHc
Q 046803 287 GYGTEAVELFHRMRAHGVRPNNV-----TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFGRA 357 (580)
Q Consensus 287 g~~~~A~~~~~~m~~~g~~pd~~-----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~ 357 (580)
+++.||...+++-.+..-.-|.. ....|-......|+..++.....-...-....|| ...-..+-+.|-.+
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~ 538 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQAL 538 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q ss_pred CC--HHHHHHHHHh
Q 046803 358 GL--LNEAYKFVKD 369 (580)
Q Consensus 358 g~--~~~A~~~~~~ 369 (580)
|. -++..+.|..
T Consensus 539 g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 539 GEKGNEMENEAFRK 552 (629)
T ss_pred CcchhhHHHHHHHH
No 475
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=29.75 E-value=6.1e+02 Score=25.76 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=13.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCC
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKP 375 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p 375 (580)
|+-.|.+.++.+-|+....+.+...|
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 44555566666666555544444444
No 476
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.50 E-value=4.6e+02 Score=24.29 Aligned_cols=56 Identities=13% Similarity=0.273 Sum_probs=39.1
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046803 261 AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318 (580)
Q Consensus 261 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 318 (580)
+..+|+-..+|.+.....|+..+. .+++++|.+++.++-+.|..|... .+.+..++
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 455666666777777777777654 567899999999998988887654 23344444
No 477
>PF15161 Neuropep_like: Neuropeptide-like
Probab=29.20 E-value=29 Score=23.19 Aligned_cols=18 Identities=44% Similarity=0.814 Sum_probs=12.6
Q ss_pred eccccCCcchhhhHHHhhh
Q 046803 535 KNLRMCVDCHSAIKFISVA 553 (580)
Q Consensus 535 ~~l~~~~~~~~~~~~~s~~ 553 (580)
-.-|-|.|||.+. |+.+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 3467899999876 55443
No 478
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.10 E-value=5.2e+02 Score=24.71 Aligned_cols=161 Identities=9% Similarity=0.050 Sum_probs=88.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHh---HHhcCCCCCHHHHHH
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNV-------TFVAVLSACAHAGLVQEGHRVFASM---RQEYGLLPGVEHHVC 349 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~~~~~~~ 349 (580)
.+-..+.+++++|+..+.+....|+..|.. |...+...|...|+...-.+..... ..++.-+........
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 344566778889999999888888776654 4555666777777655443333221 122222223444455
Q ss_pred HHHHHHH-cCCHHHHHHHHHhHcCCC--CC-----HHHHHHHHHHHHhcCCchHHHHHHHHHH----hcC--CCCcchHH
Q 046803 350 MVDLFGR-AGLLNEAYKFVKDVIGEK--PA-----PAVWTAMLGACKMHKNFDLGVEVAEHLL----SVE--PENPGHYV 415 (580)
Q Consensus 350 li~~~~~-~g~~~~A~~~~~~~~~~~--p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~--p~~~~~~~ 415 (580)
|++.+.. ...++.-+.+....+... -+ ...-.-++..+.+.|.+.+|+.+..-++ +.+ |+-...+.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 5554432 233444444443322110 00 1112245667778888888887665543 333 44445555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 416 MLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 416 ~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.=+.+|..-.+...+..-+...+..
T Consensus 170 lESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 5566777777777777666666554
No 479
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=28.59 E-value=50 Score=19.57 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHhcC
Q 046803 394 DLGVEVAEHLLSVE 407 (580)
Q Consensus 394 ~~a~~~~~~~~~~~ 407 (580)
+.|..+|++.+...
T Consensus 4 dRAR~IyeR~v~~h 17 (32)
T PF02184_consen 4 DRARSIYERFVLVH 17 (32)
T ss_pred HHHHHHHHHHHHhC
Confidence 34444444444443
No 480
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.35 E-value=3e+02 Score=29.59 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=28.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH
Q 046803 278 AMISGYGMHGYGTEAVELFHRMRAH--GVRPNNVTFVAVLSACAHAGLV 324 (580)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~ll~a~~~~g~~ 324 (580)
+|+.+|..+|++..+.++++..... |-+.=...++..+....+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5677777777777777777766642 2222223455666666666654
No 481
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.11 E-value=6.3e+02 Score=25.40 Aligned_cols=55 Identities=5% Similarity=-0.187 Sum_probs=33.7
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChh--HHHHHHHHHH--hCCChHHHHHHHHHHHHc
Q 046803 181 GYEQNGFAKEAIGLFNLMRDFGVNPDST--TCVCVLAACA--QLGDIDLGRWVHEFIVGQ 236 (580)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~~~~~~a~~~~~~~~~~ 236 (580)
.+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|...++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344678888888888888876 555444 3333444443 234566777777766554
No 482
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.06 E-value=2.2e+02 Score=21.35 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=28.2
Q ss_pred HhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHH
Q 046803 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191 (580)
Q Consensus 152 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 191 (580)
+...+.+.|.++++.++.++..+|.+...++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445677778888888777777887777777776654433
No 483
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=27.92 E-value=1.1e+02 Score=22.09 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=24.6
Q ss_pred ccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCC
Q 046803 52 DAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKAN 85 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 85 (580)
.+-+.+.|.+++..... +.+..||++..-+.+..
T Consensus 9 emlDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 9 EMLDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHcc
Confidence 55577888888877663 67788998877766653
No 484
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=27.82 E-value=9.5e+02 Score=27.39 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHhcCC------chHHHH-HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 046803 376 APAVWTAMLGACKMHKN------FDLGVE-VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVV 433 (580)
Q Consensus 376 ~~~~~~~ll~~~~~~g~------~~~a~~-~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 433 (580)
++.-..+|+.+++..+. -..+-+ +.+.++++++-||.+-..|+..+.+-.+++...+.
T Consensus 772 npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~~~r~~ 836 (863)
T TIGR02414 772 NPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLDPKRQE 836 (863)
T ss_pred CCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCCHHHHH
Confidence 45667888888864332 233444 44567789999999999999999999888887764
No 485
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=27.60 E-value=1.8e+02 Score=27.47 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=51.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
+=..|.++++++.|....++.+...| |+.-+.-=.-+|.+.|...-|+.-++...+.-|+++.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 34567888999999999877787777 4666777777889999999999999998888888654
No 486
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=27.54 E-value=4.7e+02 Score=23.79 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=9.5
Q ss_pred CCCCCCCHH---HHHHHHhcCC
Q 046803 1 MKNKQPHSP---AYEAILKAGP 19 (580)
Q Consensus 1 ~~~~~p~~~---~~~~ll~~~~ 19 (580)
|+|.+|+.. .|.+++.+++
T Consensus 59 m~GY~p~~~~~~If~Alc~a~~ 80 (216)
T PF11264_consen 59 MQGYPPEEDKDSIFNALCQALG 80 (216)
T ss_pred hcCCCChhHHHHHHHHHHHHcC
Confidence 556666432 3555555543
No 487
>PF15469 Sec5: Exocyst complex component Sec5
Probab=27.43 E-value=4.2e+02 Score=23.17 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHH
Q 046803 313 AVLSACAHAGLVQEGHRVFASMRQ 336 (580)
Q Consensus 313 ~ll~a~~~~g~~~~a~~~~~~~~~ 336 (580)
.-|.-|...|+++.+...|.++..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 344455666666666666666543
No 488
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.04 E-value=4.5e+02 Score=23.31 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
..+..|.+.|.+++|.+++++..+ +|++...
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 345679999999999999999998 7765444
No 489
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.95 E-value=4.6e+02 Score=23.42 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=29.5
Q ss_pred HhhhcCCHHHHHHHHHhccC------CChHHHHHHHH-HHHhcCC--hHHHHHHHHHHHh
Q 046803 251 MYARCGNVSKAREIFDMMSE------LNVIAWTAMIS-GYGMHGY--GTEAVELFHRMRA 301 (580)
Q Consensus 251 ~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~ 301 (580)
.....|++++|..-++.+.+ .-...|..+.. +++.++. +-+|..++.-...
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 34556777777777776653 23445555554 6666665 3456555555444
No 490
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.05 E-value=3.1e+02 Score=29.49 Aligned_cols=72 Identities=4% Similarity=0.069 Sum_probs=42.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhCCCHH------HHHHHHccCC-CCChhHHHHHHHH
Q 046803 111 AVIKSCAHLSILNLGRAVHCHVFVSG--YDSDLHVQAALVNFYAKSNNVD------VARKVFDRMP-DKSVVAWNSMISG 181 (580)
Q Consensus 111 ~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~------~A~~~f~~~~-~~~~~~~~~li~~ 181 (580)
+++.||...|++..+.++++..+... -..-...+|..|+-..+.|.++ .|.+.+++.. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 78888888888888888888776543 1222345666666677777643 2333333322 2344555555544
Q ss_pred H
Q 046803 182 Y 182 (580)
Q Consensus 182 ~ 182 (580)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 491
>PRK14015 pepN aminopeptidase N; Provisional
Probab=25.98 E-value=1e+03 Score=27.18 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCCc------hHHHHH-HHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 046803 376 APAVWTAMLGACKMHKNF------DLGVEV-AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434 (580)
Q Consensus 376 ~~~~~~~ll~~~~~~g~~------~~a~~~-~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 434 (580)
++.-..+|+.+++..+.. ..+-++ .+.++++++.||.+-..|+..+.+-.++++..+..
T Consensus 782 npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~~ 847 (875)
T PRK14015 782 NPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQAL 847 (875)
T ss_pred CCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHHH
Confidence 456678899888643322 344444 45577899999999999999999998888877643
No 492
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.70 E-value=1.8e+02 Score=23.03 Aligned_cols=46 Identities=11% Similarity=0.009 Sum_probs=28.9
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCh
Q 046803 77 LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122 (580)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 122 (580)
++..+...+.+-.|-++++++.+.+..++..|.-..|..+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555556667777777777766666666665566666555543
No 493
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=25.53 E-value=84 Score=23.22 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHHHHHHcCccCCcccc
Q 046803 469 NTNEIYQYLDELMGRCREAGYVPESESA 496 (580)
Q Consensus 469 ~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 496 (580)
...++++.+++-..+++..|+.||...+
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 3456777888888899999999997544
No 494
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=25.27 E-value=7.1e+02 Score=25.03 Aligned_cols=171 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHH-----------
Q 046803 286 HGYGTEAVELFHRMRA-----HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC----------- 349 (580)
Q Consensus 286 ~g~~~~A~~~~~~m~~-----~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----------- 349 (580)
.++.+.|++-+-...+ .....+...+..++..|...++|+.--+....+.++.|.-.-...+..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~ 104 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTP 104 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCC
Q ss_pred --------------------------------HHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHH------------HH
Q 046803 350 --------------------------------MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM------------LG 385 (580)
Q Consensus 350 --------------------------------li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l------------l~ 385 (580)
|...+-.+|++++|.+++ .+..+.||.++ +.
T Consensus 105 d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il-----~el~VETygsm~~~ekV~fiLEQmr 179 (439)
T KOG1498|consen 105 DLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADIL-----CELQVETYGSMEKSEKVAFILEQMR 179 (439)
T ss_pred CchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHH-----HhcchhhhhhhHHHHHHHHHHHHHH
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCCCcc-------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEE
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVEPENPG-------HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNY 458 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~ 458 (580)
.|...+|+-.|.-+-+++...--+++. .|..++......+.+=++-+.++....-|-.+...--|+.+-..+-
T Consensus 180 KOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv 259 (439)
T KOG1498|consen 180 LCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIV 259 (439)
T ss_pred HHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhhe
Q ss_pred EEe
Q 046803 459 LFS 461 (580)
Q Consensus 459 ~~~ 461 (580)
.|.
T Consensus 260 ~f~ 262 (439)
T KOG1498|consen 260 SFC 262 (439)
T ss_pred eEE
No 495
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=24.99 E-value=5.8e+02 Score=25.95 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=59.7
Q ss_pred CCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhH--------hhhcCCHHHHHHHHHhccC--
Q 046803 201 FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM--------YARCGNVSKAREIFDMMSE-- 270 (580)
Q Consensus 201 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------y~~~g~~~~A~~~~~~~~~-- 270 (580)
..+.||..+.+.+...++..-..+-...+++...+.+ .|-...+-+||-. -.+...-+++.++++.|+.
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 4688999999988888888888888889999888887 4444333333321 2345567889999999884
Q ss_pred --CChHHHHHHHHHHHh
Q 046803 271 --LNVIAWTAMISGYGM 285 (580)
Q Consensus 271 --~~~~~~~~li~~~~~ 285 (580)
.|+.-+-+|...|+.
T Consensus 256 ~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYSD 272 (669)
T ss_pred ccccchhHHHHHHHHhh
Confidence 466666666666653
No 496
>PF14044 NETI: NETI protein
Probab=24.03 E-value=59 Score=22.08 Aligned_cols=17 Identities=24% Similarity=0.725 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCccCCc
Q 046803 477 LDELMGRCREAGYVPES 493 (580)
Q Consensus 477 l~~l~~~m~~~g~~pd~ 493 (580)
+.+-+.+|++.||.|-.
T Consensus 10 I~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVR 26 (57)
T ss_pred HHHHHHHHHHcCCCcee
Confidence 44577789999999965
No 497
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.75 E-value=2.7e+02 Score=25.97 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=10.8
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 046803 349 CMVDLFGRAGLLNEAYKFV 367 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~ 367 (580)
.+...|.+.|++++|.++|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l 201 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLL 201 (247)
T ss_pred HHHHHHHHCCCHHHHHHHH
Confidence 3445555566666666655
No 498
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.32 E-value=2e+02 Score=22.83 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=34.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChH
Q 046803 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224 (580)
Q Consensus 177 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 224 (580)
.++..+...+..-.|.++++.+.+.+..++..|....|+.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 345555566666778888888888776777777777777777777543
No 499
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.13 E-value=1.3e+03 Score=27.18 Aligned_cols=108 Identities=13% Similarity=0.057 Sum_probs=53.1
Q ss_pred hhHhhhcCCHHHHHHHHHhccC-------------------C-----------C--hHHHHHHHHHHHhcCChHHHHHHH
Q 046803 249 INMYARCGNVSKAREIFDMMSE-------------------L-----------N--VIAWTAMISGYGMHGYGTEAVELF 296 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~-------------------~-----------~--~~~~~~li~~~~~~g~~~~A~~~~ 296 (580)
..+|..+|...+|.+.|.+... + . ..-|...++.+-+++..+.+.++-
T Consensus 927 g~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA 1006 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLA 1006 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3457788888888888876542 0 0 112334455555566666666665
Q ss_pred HHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 046803 297 HRMRAHGVRPNN----VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360 (580)
Q Consensus 297 ~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 360 (580)
...++. +.||. .+++.+.+-....|.+-+|...+-.-. ...........++-.+..+|.+
T Consensus 1007 ~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np---dserrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 1007 VKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP---DSERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred HHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhccch
Confidence 555543 22222 234444455555555555543322110 1111123344455555555554
No 500
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.83 E-value=2e+03 Score=29.37 Aligned_cols=92 Identities=12% Similarity=0.081 Sum_probs=44.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhc-CCHHHHHHHHHHhHHh-cCCCCCHHHHHHHHHHHH
Q 046803 281 SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV---LSACAHA-GLVQEGHRVFASMRQE-YGLLPGVEHHVCMVDLFG 355 (580)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l---l~a~~~~-g~~~~a~~~~~~~~~~-~~~~p~~~~~~~li~~~~ 355 (580)
....++|-++.++..+.++-..--.+=...|..+ +.+|... +....|.++.+..--. ++..-..+.++--+....
T Consensus 2744 kvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~ 2823 (3550)
T KOG0889|consen 2744 KVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLE 2823 (3550)
T ss_pred HHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHH
Confidence 3344566777777666666542111111122222 1122221 2344455544332111 111223445555566777
Q ss_pred HcCCHHHHHHHHHhHcC
Q 046803 356 RAGLLNEAYKFVKDVIG 372 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~ 372 (580)
+.|+.++|...|..+..
T Consensus 2824 kL~~~eeAn~~fs~AvQ 2840 (3550)
T KOG0889|consen 2824 KLGKFEEANKAFSAAVQ 2840 (3550)
T ss_pred HhcCcchhHHHHHHHHH
Confidence 88999999998866653
Done!