Query 046803
Match_columns 580
No_of_seqs 745 out of 4269
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 07:33:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.5E-39 2.9E-43 342.8 38.1 427 6-440 82-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.6E-36 1.6E-40 321.5 35.4 411 4-422 113-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-27 6.4E-32 240.4 40.7 370 49-426 8-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.6E-27 1.6E-31 237.5 41.7 353 77-440 5-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.6E-28 5.3E-33 253.5 23.6 183 173-356 27-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.4E-28 8.2E-33 252.1 20.3 211 89-321 8-223 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 4.4E-23 1.5E-27 212.5 37.2 308 69-384 24-370 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.8E-23 6E-28 215.4 33.9 340 90-436 11-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 6.5E-24 2.2E-28 222.5 31.0 388 46-440 12-478 (514)
10 2gw1_A Mitochondrial precursor 99.9 2.6E-23 9E-28 217.8 31.3 394 17-417 18-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 8E-21 2.7E-25 200.2 37.2 387 42-441 27-492 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.3E-19 4.6E-24 179.9 35.7 306 106-440 3-335 (359)
13 3fp2_A TPR repeat-containing p 99.9 1.5E-20 5.1E-25 198.1 30.2 389 17-415 37-500 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 9.1E-20 3.1E-24 181.1 33.9 327 70-424 2-353 (359)
15 3hym_B Cell division cycle pro 99.9 2.2E-19 7.4E-24 176.3 28.3 287 138-427 19-321 (330)
16 1b89_A Protein (clathrin heavy 99.9 2.6E-20 8.9E-25 183.4 19.8 285 52-369 15-307 (449)
17 3hym_B Cell division cycle pro 99.8 3.9E-18 1.3E-22 167.3 29.7 265 170-439 20-298 (330)
18 1fch_A Peroxisomal targeting s 99.8 6.6E-19 2.3E-23 175.9 24.3 282 151-436 35-355 (368)
19 2ooe_A Cleavage stimulation fa 99.8 6E-17 2.1E-21 170.3 38.3 393 39-440 12-492 (530)
20 4eqf_A PEX5-related protein; a 99.8 1.1E-18 3.8E-23 174.2 23.0 262 171-436 64-352 (365)
21 2xm6_A Protein corresponding t 99.8 5.6E-16 1.9E-20 161.2 43.7 352 68-441 36-433 (490)
22 2xm6_A Protein corresponding t 99.8 1.8E-16 6.1E-21 165.0 39.3 365 39-423 38-452 (490)
23 4g1t_A Interferon-induced prot 99.8 6.9E-17 2.4E-21 167.2 31.0 368 70-450 50-469 (472)
24 3mkr_A Coatomer subunit epsilo 99.8 9.5E-17 3.2E-21 154.5 29.5 268 151-432 9-286 (291)
25 1fch_A Peroxisomal targeting s 99.8 8E-18 2.7E-22 168.0 22.7 276 155-440 15-314 (368)
26 4eqf_A PEX5-related protein; a 99.8 4.9E-18 1.7E-22 169.6 19.8 232 206-440 64-310 (365)
27 1b89_A Protein (clathrin heavy 99.8 6.6E-19 2.2E-23 173.5 13.0 282 118-433 15-304 (449)
28 3cv0_A Peroxisome targeting si 99.8 1.9E-17 6.4E-22 162.2 22.8 260 173-437 22-312 (327)
29 2ooe_A Cleavage stimulation fa 99.8 8E-16 2.8E-20 161.7 33.6 365 69-441 11-455 (530)
30 3mkr_A Coatomer subunit epsilo 99.8 8.9E-17 3E-21 154.7 22.4 248 179-441 6-265 (291)
31 4g1t_A Interferon-induced prot 99.7 3.8E-16 1.3E-20 161.6 26.1 364 40-418 51-471 (472)
32 3cv0_A Peroxisome targeting si 99.7 8.5E-17 2.9E-21 157.5 19.2 273 107-407 22-316 (327)
33 1xi4_A Clathrin heavy chain; a 99.7 3.7E-14 1.3E-18 155.2 40.9 382 7-432 952-1376(1630)
34 1xi4_A Clathrin heavy chain; a 99.7 5E-14 1.7E-18 154.2 41.0 373 15-435 931-1340(1630)
35 3uq3_A Heat shock protein STI1 99.7 2.2E-15 7.6E-20 141.9 22.6 225 173-440 6-236 (258)
36 3uq3_A Heat shock protein STI1 99.7 2.2E-15 7.7E-20 141.8 20.1 234 141-418 5-254 (258)
37 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.7E-15 2E-19 140.6 21.8 242 184-434 17-269 (275)
38 3spa_A Mtrpol, DNA-directed RN 99.7 9.9E-17 3.4E-21 170.1 10.2 125 239-364 124-256 (1134)
39 2pl2_A Hypothetical conserved 99.7 3.2E-15 1.1E-19 137.2 18.8 195 239-438 2-212 (217)
40 3spa_A Mtrpol, DNA-directed RN 99.7 7E-17 2.4E-21 171.3 8.2 161 138-298 124-306 (1134)
41 3u4t_A TPR repeat-containing p 99.6 2.3E-14 7.8E-19 136.3 21.9 245 175-424 6-268 (272)
42 2ho1_A Type 4 fimbrial biogene 99.6 2E-13 6.8E-18 128.2 25.0 169 244-414 73-246 (252)
43 1ouv_A Conserved hypothetical 99.6 8.5E-13 2.9E-17 125.7 29.4 226 171-410 5-255 (273)
44 2q7f_A YRRB protein; TPR, prot 99.6 2.9E-14 1E-18 132.9 18.1 177 242-421 57-237 (243)
45 3u4t_A TPR repeat-containing p 99.6 1.7E-13 5.7E-18 130.3 22.9 241 144-387 6-265 (272)
46 3e4b_A ALGK; tetratricopeptide 99.6 7.3E-14 2.5E-18 143.2 21.5 377 38-438 5-419 (452)
47 2ho1_A Type 4 fimbrial biogene 99.6 1.6E-13 5.5E-18 128.8 22.1 198 242-441 37-239 (252)
48 2pl2_A Hypothetical conserved 99.6 9.9E-14 3.4E-18 127.2 20.0 206 171-403 4-211 (217)
49 2vq2_A PILW, putative fimbrial 99.6 1.9E-13 6.6E-18 125.5 22.0 197 241-439 7-210 (225)
50 2h6f_A Protein farnesyltransfe 99.6 9.4E-14 3.2E-18 138.2 20.8 225 209-440 99-348 (382)
51 2h6f_A Protein farnesyltransfe 99.6 1.8E-13 6.2E-18 136.1 22.8 246 172-424 97-366 (382)
52 2vq2_A PILW, putative fimbrial 99.6 4.4E-13 1.5E-17 123.1 24.0 206 209-417 10-222 (225)
53 2q7f_A YRRB protein; TPR, prot 99.6 8.1E-14 2.8E-18 129.9 18.9 199 240-441 21-223 (243)
54 3sf4_A G-protein-signaling mod 99.6 1.1E-13 3.7E-18 139.7 21.1 267 172-439 9-335 (406)
55 4a1s_A PINS, partner of inscut 99.6 5.3E-14 1.8E-18 142.6 18.7 261 178-440 54-372 (411)
56 3ro2_A PINS homolog, G-protein 99.6 9E-14 3.1E-18 136.0 19.0 265 174-440 7-332 (338)
57 1ouv_A Conserved hypothetical 99.6 2.6E-12 9E-17 122.2 28.3 224 206-442 5-253 (273)
58 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-13 3.8E-18 131.6 18.0 219 173-400 44-269 (275)
59 3e4b_A ALGK; tetratricopeptide 99.5 3.2E-13 1.1E-17 138.4 21.3 343 77-442 9-389 (452)
60 3vtx_A MAMA; tetratricopeptide 99.5 7E-13 2.4E-17 118.0 20.7 166 272-441 4-171 (184)
61 3sf4_A G-protein-signaling mod 99.5 1.1E-13 3.6E-18 139.8 15.6 294 104-428 7-364 (406)
62 4abn_A Tetratricopeptide repea 99.5 1.3E-13 4.4E-18 142.3 16.4 208 224-436 85-317 (474)
63 4a1s_A PINS, partner of inscut 99.5 2.8E-13 9.5E-18 137.2 15.0 235 175-409 89-375 (411)
64 3vtx_A MAMA; tetratricopeptide 99.5 1.8E-12 6.2E-17 115.3 17.7 169 240-411 3-175 (184)
65 2ond_A Cleavage stimulation fa 99.5 3.7E-11 1.3E-15 116.5 27.3 220 189-412 33-276 (308)
66 3ro2_A PINS homolog, G-protein 99.5 1.8E-12 6E-17 126.8 18.0 135 275-409 185-335 (338)
67 3nf1_A KLC 1, kinesin light ch 99.4 5E-13 1.7E-17 129.4 13.2 237 172-439 27-306 (311)
68 4e6h_A MRNA 3'-END-processing 99.4 4.4E-10 1.5E-14 119.3 36.4 401 38-440 64-570 (679)
69 2ond_A Cleavage stimulation fa 99.4 1.1E-11 3.6E-16 120.3 21.8 213 224-441 33-271 (308)
70 4gyw_A UDP-N-acetylglucosamine 99.4 3.7E-12 1.3E-16 136.8 19.4 162 273-439 9-173 (723)
71 3ulq_A Response regulator aspa 99.4 7.5E-12 2.6E-16 125.5 19.8 196 243-439 144-367 (383)
72 3nf1_A KLC 1, kinesin light ch 99.4 1.3E-12 4.5E-17 126.5 12.5 245 140-409 26-310 (311)
73 3ulq_A Response regulator aspa 99.4 1.3E-11 4.4E-16 123.8 19.9 229 178-407 109-369 (383)
74 4i17_A Hypothetical protein; T 99.4 1.7E-11 5.9E-16 113.1 18.5 191 241-440 6-209 (228)
75 1hz4_A MALT regulatory protein 99.4 3.6E-10 1.2E-14 112.7 29.4 262 178-439 20-321 (373)
76 3as5_A MAMA; tetratricopeptide 99.4 2.4E-11 8.1E-16 107.5 18.3 163 275-440 10-173 (186)
77 4abn_A Tetratricopeptide repea 99.4 2.3E-11 7.8E-16 125.4 20.1 179 258-441 84-288 (474)
78 4e6h_A MRNA 3'-END-processing 99.4 7.2E-10 2.4E-14 117.7 31.2 400 7-411 65-575 (679)
79 4i17_A Hypothetical protein; T 99.4 5.8E-11 2E-15 109.5 20.2 205 205-421 5-224 (228)
80 3as5_A MAMA; tetratricopeptide 99.3 6.4E-11 2.2E-15 104.7 18.8 170 242-414 8-181 (186)
81 3q15_A PSP28, response regulat 99.3 6.2E-11 2.1E-15 118.6 19.8 222 217-439 111-364 (378)
82 3q15_A PSP28, response regulat 99.3 1.4E-09 4.8E-14 108.6 27.2 228 177-406 106-365 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.3 7.8E-11 2.7E-15 126.5 17.3 165 239-408 6-176 (723)
84 1qqe_A Vesicular transport pro 99.2 1.6E-10 5.6E-15 110.9 16.6 186 252-437 47-266 (292)
85 1qqe_A Vesicular transport pro 99.2 3.2E-10 1.1E-14 108.9 18.6 219 156-411 32-274 (292)
86 1hz4_A MALT regulatory protein 99.2 6E-09 2E-13 103.7 27.8 158 77-234 20-201 (373)
87 3edt_B KLC 2, kinesin light ch 99.2 2.3E-10 7.8E-15 108.7 16.1 222 218-439 12-280 (283)
88 3qky_A Outer membrane assembly 99.2 7.8E-10 2.7E-14 104.2 19.5 188 274-486 16-247 (261)
89 4ga2_A E3 SUMO-protein ligase 99.1 1E-10 3.5E-15 100.0 8.8 141 281-426 5-149 (150)
90 3qky_A Outer membrane assembly 99.1 1.8E-09 6.2E-14 101.7 17.8 81 348-428 152-249 (261)
91 2yhc_A BAMD, UPF0169 lipoprote 99.1 6.1E-09 2.1E-13 95.6 20.9 181 243-443 5-216 (225)
92 3edt_B KLC 2, kinesin light ch 99.1 2.2E-09 7.5E-14 101.8 17.7 198 209-406 45-281 (283)
93 3mv2_B Coatomer subunit epsilo 99.1 1.8E-08 6.1E-13 95.2 22.8 256 151-439 23-304 (310)
94 2fo7_A Synthetic consensus TPR 99.1 2.2E-09 7.5E-14 89.0 15.0 126 312-439 5-131 (136)
95 3mv2_B Coatomer subunit epsilo 99.1 1.9E-08 6.6E-13 94.9 22.4 241 179-441 20-283 (310)
96 3qou_A Protein YBBN; thioredox 99.1 3.2E-09 1.1E-13 101.6 16.8 177 257-438 101-282 (287)
97 2pzi_A Probable serine/threoni 99.1 5.4E-10 1.9E-14 120.5 12.4 168 253-426 402-583 (681)
98 4ga2_A E3 SUMO-protein ligase 99.1 4.4E-10 1.5E-14 96.0 8.8 122 315-439 4-128 (150)
99 2fo7_A Synthetic consensus TPR 99.0 7.3E-09 2.5E-13 85.7 15.8 132 275-409 3-135 (136)
100 4gco_A Protein STI-1; structur 99.0 2.2E-09 7.4E-14 88.5 11.2 100 340-439 8-109 (126)
101 3gyz_A Chaperone protein IPGC; 99.0 2.4E-09 8.1E-14 91.2 11.3 103 339-441 30-134 (151)
102 2pzi_A Probable serine/threoni 99.0 1.3E-08 4.5E-13 109.6 19.5 188 218-412 402-608 (681)
103 3rjv_A Putative SEL1 repeat pr 99.0 3.5E-08 1.2E-12 89.6 19.4 173 261-442 5-199 (212)
104 2ifu_A Gamma-SNAP; membrane fu 99.0 3.5E-09 1.2E-13 102.4 13.1 221 185-433 4-254 (307)
105 2vgx_A Chaperone SYCD; alterna 99.0 2.7E-09 9.3E-14 90.8 10.4 102 339-440 15-118 (148)
106 2vsy_A XCC0866; transferase, g 99.0 7.1E-09 2.4E-13 109.6 15.9 160 255-418 2-169 (568)
107 2r5s_A Uncharacterized protein 99.0 7.5E-09 2.6E-13 91.0 13.5 77 362-438 92-171 (176)
108 3dra_A Protein farnesyltransfe 99.0 1.7E-07 6E-12 89.3 23.4 212 224-439 50-286 (306)
109 2vsy_A XCC0866; transferase, g 98.9 1.6E-08 5.5E-13 106.8 17.3 153 220-376 2-160 (568)
110 3urz_A Uncharacterized protein 98.9 4E-08 1.4E-12 88.9 16.8 126 279-409 60-189 (208)
111 2ifu_A Gamma-SNAP; membrane fu 98.9 8.2E-09 2.8E-13 99.8 12.9 197 220-438 4-222 (307)
112 3urz_A Uncharacterized protein 98.9 3E-08 1E-12 89.7 15.5 123 314-440 60-186 (208)
113 2r5s_A Uncharacterized protein 98.9 3E-08 1E-12 87.0 15.0 156 245-405 9-172 (176)
114 4gco_A Protein STI-1; structur 98.9 2E-08 6.7E-13 82.7 12.6 115 304-420 8-124 (126)
115 3u3w_A Transcriptional activat 98.9 2.5E-07 8.7E-12 88.5 22.1 161 279-439 81-265 (293)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.9 4.5E-08 1.5E-12 88.7 15.8 126 311-441 9-151 (213)
117 2yhc_A BAMD, UPF0169 lipoprote 98.9 6.9E-08 2.3E-12 88.5 17.0 186 206-412 3-219 (225)
118 2uy1_A Cleavage stimulation fa 98.8 3.3E-06 1.1E-10 86.8 30.2 182 54-236 28-242 (493)
119 2xcb_A PCRH, regulatory protei 98.8 3.6E-08 1.2E-12 83.1 12.8 102 339-440 12-115 (142)
120 2qfc_A PLCR protein; TPR, HTH, 98.8 2E-07 6.9E-12 89.3 19.7 166 274-439 76-265 (293)
121 3dra_A Protein farnesyltransfe 98.8 1.6E-06 5.4E-11 82.7 24.3 230 183-418 44-300 (306)
122 1a17_A Serine/threonine protei 98.8 8.2E-08 2.8E-12 82.9 14.2 129 309-439 14-145 (166)
123 3qou_A Protein YBBN; thioredox 98.8 2.1E-07 7.3E-12 88.7 18.2 159 242-404 117-282 (287)
124 3rjv_A Putative SEL1 repeat pr 98.8 2.9E-07 9.9E-12 83.4 18.1 160 242-408 18-199 (212)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.9E-07 1E-11 83.2 18.1 143 247-410 11-154 (213)
126 3upv_A Heat shock protein STI1 98.8 5.8E-08 2E-12 79.8 11.6 97 344-440 4-101 (126)
127 1na0_A Designed protein CTPR3; 98.8 1.3E-07 4.5E-12 76.8 13.7 116 308-425 9-125 (125)
128 2vyi_A SGTA protein; chaperone 98.8 9.8E-08 3.4E-12 78.4 12.9 118 308-427 12-130 (131)
129 2lni_A Stress-induced-phosphop 98.8 8.6E-08 2.9E-12 79.2 12.3 116 308-426 16-133 (133)
130 1p5q_A FKBP52, FK506-binding p 98.8 9.3E-08 3.2E-12 93.5 14.4 95 344-438 196-292 (336)
131 2qfc_A PLCR protein; TPR, HTH, 98.7 4.5E-07 1.5E-11 86.8 18.5 164 243-406 76-266 (293)
132 2uy1_A Cleavage stimulation fa 98.7 9.3E-07 3.2E-11 90.9 21.9 374 56-488 11-418 (493)
133 3u3w_A Transcriptional activat 98.7 3.8E-06 1.3E-10 80.3 24.0 160 247-406 80-266 (293)
134 2e2e_A Formate-dependent nitri 98.7 6.9E-08 2.3E-12 84.7 10.6 120 320-441 22-145 (177)
135 1hxi_A PEX5, peroxisome target 98.7 6.6E-08 2.3E-12 78.9 9.0 96 346-441 19-115 (121)
136 4gcn_A Protein STI-1; structur 98.6 1.2E-07 4.1E-12 78.1 9.7 96 344-439 8-111 (127)
137 3q49_B STIP1 homology and U bo 98.6 2.5E-07 8.7E-12 76.9 11.8 99 342-440 7-106 (137)
138 3sz7_A HSC70 cochaperone (SGT) 98.6 1.7E-07 5.9E-12 81.0 11.0 96 344-439 11-107 (164)
139 2c2l_A CHIP, carboxy terminus 98.6 6.5E-08 2.2E-12 92.0 9.0 189 242-439 4-198 (281)
140 1wao_1 Serine/threonine protei 98.6 1.3E-07 4.5E-12 97.1 11.8 118 316-436 14-135 (477)
141 2vgx_A Chaperone SYCD; alterna 98.6 9.9E-08 3.4E-12 81.0 8.5 115 296-414 10-126 (148)
142 3q7a_A Farnesyltransferase alp 98.6 4.7E-06 1.6E-10 80.3 21.0 223 181-439 63-330 (349)
143 2kck_A TPR repeat; tetratricop 98.6 1.6E-07 5.4E-12 74.8 9.1 98 344-441 6-107 (112)
144 3gyz_A Chaperone protein IPGC; 98.6 2E-07 7E-12 79.1 9.9 104 304-410 31-137 (151)
145 1elw_A TPR1-domain of HOP; HOP 98.6 7.1E-07 2.4E-11 71.6 12.9 109 310-420 6-115 (118)
146 2fbn_A 70 kDa peptidylprolyl i 98.6 3.7E-07 1.3E-11 81.7 12.1 171 249-440 11-186 (198)
147 2lni_A Stress-induced-phosphop 98.6 4.5E-07 1.6E-11 74.7 11.8 98 343-440 15-113 (133)
148 3gw4_A Uncharacterized protein 98.6 9.2E-07 3.1E-11 79.1 14.6 130 310-439 28-175 (203)
149 1elw_A TPR1-domain of HOP; HOP 98.6 5.2E-07 1.8E-11 72.4 11.5 98 343-440 3-101 (118)
150 3upv_A Heat shock protein STI1 98.6 5.3E-07 1.8E-11 73.9 11.6 111 309-421 5-122 (126)
151 2xcb_A PCRH, regulatory protei 98.6 3.8E-07 1.3E-11 76.7 10.7 107 309-417 19-126 (142)
152 2e2e_A Formate-dependent nitri 98.6 4.4E-07 1.5E-11 79.4 11.5 128 284-414 21-152 (177)
153 4f3v_A ESX-1 secretion system 98.6 2.5E-07 8.7E-12 86.2 10.2 135 278-417 107-247 (282)
154 3sz7_A HSC70 cochaperone (SGT) 98.6 7.4E-07 2.5E-11 76.9 12.7 110 308-419 11-121 (164)
155 3gw4_A Uncharacterized protein 98.6 1.2E-06 3.9E-11 78.4 14.4 153 254-406 4-176 (203)
156 1na0_A Designed protein CTPR3; 98.5 7.1E-07 2.4E-11 72.4 11.4 97 344-440 9-106 (125)
157 2dba_A Smooth muscle cell asso 98.5 1.3E-06 4.6E-11 73.4 13.3 110 309-421 29-143 (148)
158 2dba_A Smooth muscle cell asso 98.5 1.1E-06 3.7E-11 73.9 12.8 98 343-440 27-128 (148)
159 4f3v_A ESX-1 secretion system 98.5 2E-06 6.8E-11 80.1 15.3 181 254-440 18-237 (282)
160 3dss_A Geranylgeranyl transfer 98.5 1.8E-05 6.3E-10 75.8 22.4 179 259-440 91-304 (331)
161 3rkv_A Putative peptidylprolyl 98.5 9E-07 3.1E-11 76.2 12.1 95 346-440 13-126 (162)
162 1a17_A Serine/threonine protei 98.5 2.7E-06 9.1E-11 73.1 15.1 130 273-405 13-145 (166)
163 2hr2_A Hypothetical protein; a 98.5 4.7E-07 1.6E-11 76.2 9.7 94 347-440 14-131 (159)
164 2c2l_A CHIP, carboxy terminus 98.5 1E-06 3.5E-11 83.7 13.4 191 207-407 4-200 (281)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.3E-06 4.5E-11 89.2 14.2 145 273-439 268-414 (457)
166 3q7a_A Farnesyltransferase alp 98.5 7.8E-05 2.7E-09 71.8 24.8 157 143-301 56-236 (349)
167 3q49_B STIP1 homology and U bo 98.5 1.4E-06 4.7E-11 72.4 11.3 101 307-409 8-109 (137)
168 2vyi_A SGTA protein; chaperone 98.4 4.5E-06 1.5E-10 68.1 14.2 118 273-393 12-130 (131)
169 3dss_A Geranylgeranyl transfer 98.4 3.9E-05 1.3E-09 73.5 22.2 193 223-421 90-319 (331)
170 1wao_1 Serine/threonine protei 98.4 1.1E-06 3.7E-11 90.2 12.3 86 248-335 12-101 (477)
171 1p5q_A FKBP52, FK506-binding p 98.4 2.1E-06 7.3E-11 83.8 13.7 130 272-405 146-293 (336)
172 2fbn_A 70 kDa peptidylprolyl i 98.4 7.7E-07 2.6E-11 79.6 8.9 163 213-397 10-176 (198)
173 3k9i_A BH0479 protein; putativ 98.4 2.9E-07 9.8E-12 74.5 5.5 84 356-439 2-89 (117)
174 2kck_A TPR repeat; tetratricop 98.4 2.6E-06 9E-11 67.5 11.1 101 309-411 7-111 (112)
175 1hxi_A PEX5, peroxisome target 98.4 1.8E-06 6.1E-11 70.2 10.0 98 311-411 20-119 (121)
176 2xev_A YBGF; tetratricopeptide 98.4 1.7E-06 5.9E-11 70.9 9.6 91 350-440 8-105 (129)
177 2hr2_A Hypothetical protein; a 98.4 1.2E-06 4.2E-11 73.7 8.4 74 346-419 59-144 (159)
178 1elr_A TPR2A-domain of HOP; HO 98.3 2E-06 7E-11 70.3 9.7 107 311-420 7-121 (131)
179 1elr_A TPR2A-domain of HOP; HO 98.3 1.6E-06 5.6E-11 70.9 9.1 97 344-440 4-108 (131)
180 4gcn_A Protein STI-1; structur 98.3 1E-05 3.5E-10 66.3 13.6 103 275-379 10-118 (127)
181 1ihg_A Cyclophilin 40; ppiase 98.3 3.3E-06 1.1E-10 83.4 12.4 138 274-433 224-363 (370)
182 3ro3_A PINS homolog, G-protein 98.3 2.8E-06 9.4E-11 72.4 10.0 94 346-439 51-157 (164)
183 3rkv_A Putative peptidylprolyl 98.3 2.2E-06 7.4E-11 73.8 9.0 77 344-420 63-141 (162)
184 2xev_A YBGF; tetratricopeptide 98.3 1.2E-05 4.1E-10 65.7 12.9 104 314-417 8-116 (129)
185 3k9i_A BH0479 protein; putativ 98.3 1.1E-06 3.9E-11 70.9 6.1 94 321-415 3-99 (117)
186 2if4_A ATFKBP42; FKBP-like, al 98.2 1.1E-06 3.7E-11 85.9 6.5 149 273-441 179-329 (338)
187 3n71_A Histone lysine methyltr 98.2 1.7E-05 5.8E-10 80.9 14.7 125 317-441 318-465 (490)
188 3ro3_A PINS homolog, G-protein 98.2 1.4E-05 4.9E-10 67.8 12.2 133 275-407 11-159 (164)
189 2l6j_A TPR repeat-containing p 98.2 2.6E-06 8.8E-11 67.6 6.9 93 343-435 3-102 (111)
190 2if4_A ATFKBP42; FKBP-like, al 98.2 4.3E-06 1.5E-10 81.6 9.7 153 242-411 179-333 (338)
191 4b4t_Q 26S proteasome regulato 98.2 0.0001 3.4E-09 74.5 20.2 156 179-334 11-201 (434)
192 1dce_A Protein (RAB geranylger 98.2 5.8E-05 2E-09 78.9 18.4 170 257-429 44-244 (567)
193 4b4t_Q 26S proteasome regulato 98.2 5.5E-05 1.9E-09 76.4 17.9 186 148-333 11-241 (434)
194 1ihg_A Cyclophilin 40; ppiase 98.2 1.2E-05 3.9E-10 79.5 12.4 68 373-440 268-336 (370)
195 1na3_A Designed protein CTPR2; 98.2 8.2E-06 2.8E-10 61.9 8.8 82 344-425 9-91 (91)
196 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.3E-05 4.5E-10 81.7 11.8 98 344-441 268-381 (457)
197 2kat_A Uncharacterized protein 98.1 1.2E-05 4.1E-10 64.4 9.1 79 362-440 3-82 (115)
198 1zu2_A Mitochondrial import re 98.1 2.6E-06 8.8E-11 71.5 5.0 87 355-441 13-121 (158)
199 3ma5_A Tetratricopeptide repea 98.0 3.1E-05 1.1E-09 60.2 8.6 67 374-440 3-70 (100)
200 1zu2_A Mitochondrial import re 97.9 1.3E-05 4.5E-10 67.2 5.3 88 321-411 15-125 (158)
201 3n71_A Histone lysine methyltr 97.8 0.0002 7E-09 72.9 13.7 124 282-405 318-463 (490)
202 3qwp_A SET and MYND domain-con 97.7 0.00014 4.7E-09 73.1 10.5 117 351-485 294-427 (429)
203 2kat_A Uncharacterized protein 97.7 0.00014 4.6E-09 58.1 8.5 81 326-409 3-85 (115)
204 1dce_A Protein (RAB geranylger 97.7 0.0013 4.5E-08 68.5 17.4 182 224-410 46-271 (567)
205 3bee_A Putative YFRE protein; 97.6 0.00031 1.1E-08 53.5 9.3 68 375-442 4-74 (93)
206 2l6j_A TPR repeat-containing p 97.6 7.1E-05 2.4E-09 59.0 6.0 92 308-401 4-102 (111)
207 3ma5_A Tetratricopeptide repea 97.5 0.00016 5.4E-09 56.1 6.0 67 343-409 6-73 (100)
208 2kc7_A BFR218_protein; tetratr 97.5 0.00046 1.6E-08 53.0 8.7 65 350-414 6-72 (99)
209 3qww_A SET and MYND domain-con 97.5 0.00072 2.5E-08 67.7 11.8 93 321-413 311-423 (433)
210 1klx_A Cysteine rich protein B 97.5 0.0019 6.5E-08 53.4 12.6 89 350-441 31-127 (138)
211 3qww_A SET and MYND domain-con 97.4 0.0002 6.7E-09 71.8 7.3 84 356-439 310-410 (433)
212 3ly7_A Transcriptional activat 97.4 0.0054 1.8E-07 59.0 16.2 139 271-411 192-344 (372)
213 1pc2_A Mitochondria fission pr 97.4 0.00094 3.2E-08 55.3 9.6 106 360-491 14-125 (152)
214 3qwp_A SET and MYND domain-con 97.4 0.0016 5.5E-08 65.2 13.2 101 315-415 294-414 (429)
215 1na3_A Designed protein CTPR2; 97.4 0.00068 2.3E-08 50.9 8.1 64 377-440 9-72 (91)
216 1klx_A Cysteine rich protein B 97.3 0.0029 1E-07 52.2 12.3 108 187-302 10-126 (138)
217 3bee_A Putative YFRE protein; 97.0 0.0036 1.2E-07 47.5 9.0 69 342-410 4-76 (93)
218 3u64_A Protein TP_0956; tetrat 97.0 0.0022 7.4E-08 59.1 8.7 88 360-447 179-276 (301)
219 2kc7_A BFR218_protein; tetratr 96.9 0.0018 6.3E-08 49.5 6.8 59 383-441 6-65 (99)
220 3mkq_A Coatomer beta'-subunit; 96.9 0.068 2.3E-06 58.4 21.7 154 80-268 608-762 (814)
221 3mkq_A Coatomer beta'-subunit; 96.9 0.037 1.3E-06 60.6 19.0 99 251-367 661-759 (814)
222 1wy6_A Hypothetical protein ST 96.7 0.081 2.8E-06 42.1 13.7 140 284-443 18-157 (172)
223 2v5f_A Prolyl 4-hydroxylase su 96.6 0.013 4.6E-07 45.4 9.7 75 343-417 4-86 (104)
224 1qsa_A Protein (soluble lytic 96.6 0.93 3.2E-05 47.2 27.5 80 142-223 73-152 (618)
225 1pc2_A Mitochondria fission pr 96.5 0.011 3.7E-07 49.0 8.5 88 324-413 14-107 (152)
226 3ly7_A Transcriptional activat 96.3 0.054 1.8E-06 52.1 13.0 74 305-381 274-347 (372)
227 1nzn_A CGI-135 protein, fissio 96.2 0.036 1.2E-06 44.1 9.7 64 376-439 34-102 (126)
228 1y8m_A FIS1; mitochondria, unk 95.9 0.17 5.6E-06 41.0 12.3 103 362-490 24-130 (144)
229 3mkq_B Coatomer subunit alpha; 95.9 0.24 8.1E-06 42.0 13.7 128 251-403 14-141 (177)
230 3mkq_B Coatomer subunit alpha; 95.8 0.52 1.8E-05 39.9 15.6 104 149-269 13-116 (177)
231 3u64_A Protein TP_0956; tetrat 95.7 0.022 7.6E-07 52.5 7.1 104 325-437 180-295 (301)
232 2v5f_A Prolyl 4-hydroxylase su 95.4 0.12 4E-06 39.8 9.6 67 310-376 7-78 (104)
233 1nzn_A CGI-135 protein, fissio 95.0 0.26 8.8E-06 39.1 10.4 90 323-414 16-111 (126)
234 3lvg_A Clathrin heavy chain 1; 94.7 0.00014 4.9E-09 71.2 -11.0 253 55-332 40-315 (624)
235 4h7y_A Dual specificity protei 94.4 0.79 2.7E-05 37.4 11.8 103 270-375 10-125 (161)
236 3o48_A Mitochondria fission 1 94.3 0.33 1.1E-05 38.7 9.4 66 374-439 37-106 (134)
237 4gns_B Protein CSD3, chitin bi 94.3 0.16 5.5E-06 54.0 9.9 55 384-438 344-398 (754)
238 2wpv_A GET4, UPF0363 protein Y 94.2 3.7 0.00013 38.5 22.0 169 143-337 35-217 (312)
239 3lvg_A Clathrin heavy chain 1; 94.1 0.0035 1.2E-07 61.6 -2.8 238 39-294 53-325 (624)
240 3lpz_A GET4 (YOR164C homolog); 94.0 4.2 0.00014 38.4 22.3 167 144-336 38-215 (336)
241 4ady_A RPN2, 26S proteasome re 93.8 9.2 0.00031 41.6 23.8 251 181-439 383-657 (963)
242 1wy6_A Hypothetical protein ST 92.8 3.1 0.00011 33.2 14.4 86 152-239 72-157 (172)
243 4h7y_A Dual specificity protei 92.0 1.2 4.2E-05 36.2 9.5 53 391-443 74-126 (161)
244 3txn_A 26S proteasome regulato 90.4 14 0.00046 36.0 17.6 163 208-370 20-207 (394)
245 3lpz_A GET4 (YOR164C homolog); 89.4 14 0.00049 34.7 23.3 167 244-439 37-215 (336)
246 2uwj_G Type III export protein 89.3 5.2 0.00018 29.8 9.8 87 120-211 20-106 (115)
247 2p58_C Putative type III secre 89.2 5.6 0.00019 29.7 10.1 87 120-211 21-107 (116)
248 1v54_E Cytochrome C oxidase po 89.1 3 0.0001 31.2 8.5 63 288-352 25-87 (109)
249 4b4t_P 26S proteasome regulato 88.5 15 0.00052 36.5 16.4 187 185-371 29-245 (445)
250 4ady_A RPN2, 26S proteasome re 88.5 32 0.0011 37.5 21.4 286 75-370 343-655 (963)
251 1y8m_A FIS1; mitochondria, unk 88.1 7.5 0.00026 31.4 11.0 72 341-412 36-112 (144)
252 4gns_B Protein CSD3, chitin bi 87.7 2.2 7.5E-05 45.4 10.0 49 354-402 347-396 (754)
253 3ffl_A Anaphase-promoting comp 87.1 4 0.00014 34.0 9.1 24 347-370 66-89 (167)
254 3ffl_A Anaphase-promoting comp 86.9 4.6 0.00016 33.5 9.4 24 349-373 127-150 (167)
255 2ff4_A Probable regulatory pro 86.1 1.8 6E-05 42.4 7.9 67 380-446 174-245 (388)
256 3o48_A Mitochondria fission 1 85.8 6.6 0.00023 31.2 9.4 71 342-412 38-113 (134)
257 4fhn_B Nucleoporin NUP120; pro 85.4 17 0.00058 41.2 16.4 142 212-361 817-988 (1139)
258 4fhn_B Nucleoporin NUP120; pro 85.0 13 0.00045 42.1 15.3 163 146-326 817-989 (1139)
259 2p58_C Putative type III secre 84.9 10 0.00035 28.3 9.2 85 222-311 22-106 (116)
260 2uwj_G Type III export protein 83.8 9.5 0.00032 28.4 8.6 86 222-312 21-106 (115)
261 2y69_E Cytochrome C oxidase su 83.6 7.3 0.00025 30.9 8.5 63 288-352 68-130 (152)
262 2ff4_A Probable regulatory pro 83.0 10 0.00034 36.9 11.7 69 277-346 175-247 (388)
263 1v54_E Cytochrome C oxidase po 82.3 6.5 0.00022 29.4 7.4 47 371-417 39-85 (109)
264 2wpv_A GET4, UPF0363 protein Y 81.5 35 0.0012 31.8 22.0 168 244-439 35-216 (312)
265 4b4t_R RPN7, 26S proteasome re 81.3 33 0.0011 33.7 15.0 93 209-301 133-236 (429)
266 1zbp_A Hypothetical protein VP 80.1 13 0.00045 33.6 10.3 52 283-335 7-58 (273)
267 4b4t_P 26S proteasome regulato 79.0 53 0.0018 32.5 23.7 195 155-367 30-261 (445)
268 3ltm_A Alpha-REP4; protein eng 75.3 39 0.0013 29.0 18.7 48 241-288 94-141 (211)
269 1zbp_A Hypothetical protein VP 74.7 6.2 0.00021 35.7 6.5 59 352-410 5-64 (273)
270 2y69_E Cytochrome C oxidase su 68.0 23 0.00079 28.1 7.4 61 188-249 69-129 (152)
271 1qsa_A Protein (soluble lytic 63.4 1.4E+02 0.0049 30.8 36.4 393 26-444 57-483 (618)
272 4b4t_R RPN7, 26S proteasome re 62.7 88 0.003 30.6 12.8 58 278-335 136-195 (429)
273 3kea_A K1L; tropism, ANK repea 62.1 86 0.0029 28.4 12.1 17 49-65 37-53 (285)
274 3esl_A Checkpoint serine/threo 61.8 77 0.0026 27.2 13.0 89 378-492 81-171 (202)
275 1wdy_A 2-5A-dependent ribonucl 60.7 50 0.0017 29.5 10.2 48 219-266 191-240 (285)
276 3ltj_A Alpharep-4; protein eng 60.0 78 0.0027 26.7 19.4 48 241-288 89-136 (201)
277 4a1g_A Mitotic checkpoint seri 58.0 73 0.0025 25.9 9.2 51 394-444 82-134 (152)
278 2qx5_A Nucleoporin NIC96; mRNA 57.7 1.8E+02 0.0062 30.3 14.4 79 113-198 301-382 (661)
279 2qx5_A Nucleoporin NIC96; mRNA 57.2 65 0.0022 33.6 10.9 16 422-437 549-564 (661)
280 2nsz_A Programmed cell death p 54.0 49 0.0017 26.1 7.5 65 144-208 10-79 (129)
281 2wvi_A Mitotic checkpoint seri 50.9 97 0.0033 25.6 8.9 51 394-444 77-129 (164)
282 3ltj_A Alpharep-4; protein eng 50.9 1.1E+02 0.0038 25.7 20.3 145 148-301 35-179 (201)
283 2l0z_A Glycoprotein G2; zinc-b 50.6 5.2 0.00018 23.9 0.8 18 562-579 11-29 (42)
284 3ltm_A Alpha-REP4; protein eng 48.8 1.2E+02 0.0042 25.6 19.2 92 205-301 93-184 (211)
285 1k1a_A B-cell lymphoma 3-encod 48.2 1E+02 0.0035 26.6 9.8 83 81-167 16-102 (241)
286 2zu6_B Programmed cell death p 48.0 1.5E+02 0.0051 27.5 10.8 194 145-342 7-235 (307)
287 3bu8_A Telomeric repeat-bindin 46.1 94 0.0032 26.9 8.1 55 324-378 88-148 (235)
288 2ion_A PDCD4, programmed cell 44.8 47 0.0016 27.1 6.1 65 144-208 12-81 (152)
289 1oyz_A Hypothetical protein YI 44.5 1.7E+02 0.0059 26.1 23.1 18 240-257 140-157 (280)
290 2k0q_A Putative uncharacterize 43.9 8.1 0.00028 26.3 1.1 22 556-577 8-29 (74)
291 2d2s_A Exocyst complex compone 43.8 78 0.0027 28.0 7.9 87 280-370 25-117 (235)
292 1wdy_A 2-5A-dependent ribonucl 41.9 83 0.0028 28.0 8.3 16 150-165 45-60 (285)
293 1k1a_A B-cell lymphoma 3-encod 40.6 1.4E+02 0.0048 25.7 9.5 55 113-167 13-69 (241)
294 2d2s_A Exocyst complex compone 40.1 1E+02 0.0036 27.2 8.1 23 178-200 24-46 (235)
295 3bqo_A Telomeric repeat-bindin 39.1 1.3E+02 0.0045 25.6 7.9 60 360-420 94-160 (211)
296 3esl_A Checkpoint serine/threo 39.1 1.8E+02 0.0063 24.8 10.5 82 158-240 61-148 (202)
297 1n11_A Ankyrin; clathrin, BAND 38.1 69 0.0024 31.2 7.5 23 46-68 17-39 (437)
298 3txn_A 26S proteasome regulato 37.9 2.8E+02 0.0096 26.7 27.5 90 341-443 253-346 (394)
299 3hra_A Ankyrin repeat family p 37.0 1.7E+02 0.006 24.1 9.2 18 151-168 12-29 (201)
300 3ygs_P Procaspase 9; apoptosis 36.5 48 0.0017 24.5 4.6 59 27-90 26-87 (97)
301 1ug3_A EIF4GI, eukaryotic prot 36.1 2.5E+02 0.0085 26.3 10.7 92 144-235 14-113 (339)
302 3jxi_A Vanilloid receptor-rela 35.7 44 0.0015 29.7 5.2 54 79-132 10-72 (260)
303 2r9g_A AAA ATPase, central reg 33.8 1.6E+02 0.0054 25.2 7.7 64 175-239 14-85 (204)
304 2hgo_A CASSIICOLIN; toxin, dis 33.5 8.2 0.00028 19.8 -0.1 14 567-580 7-22 (27)
305 2p1h_A APAF-1, apoptotic prote 33.4 87 0.003 22.8 5.6 61 24-88 24-84 (94)
306 1oyz_A Hypothetical protein YI 33.2 2.6E+02 0.0089 24.8 20.2 20 269-288 202-221 (280)
307 3eiq_C Programmed cell death p 32.9 3.2E+02 0.011 25.8 12.6 28 144-171 57-84 (358)
308 2ion_A PDCD4, programmed cell 32.6 2E+02 0.0068 23.3 8.1 62 245-306 12-78 (152)
309 3eu9_A Huntingtin-interacting 31.7 1.6E+02 0.0054 25.2 8.3 14 52-65 18-31 (240)
310 2lo3_A SAGA-associated factor 30.6 12 0.00042 22.5 0.3 11 536-546 16-26 (44)
311 2pk8_A Uncharacterized protein 29.4 22 0.00077 25.7 1.5 31 467-497 12-42 (103)
312 4gq2_M Nucleoporin NUP120; bet 28.2 5.7E+02 0.02 27.9 13.3 127 147-287 816-950 (950)
313 2r9g_A AAA ATPase, central reg 28.0 2.6E+02 0.009 23.8 8.0 66 72-138 12-85 (204)
314 2fe3_A Peroxide operon regulat 28.0 1.5E+02 0.0051 23.7 6.6 45 177-221 26-70 (145)
315 3hra_A Ankyrin repeat family p 27.5 1.7E+02 0.0057 24.3 7.4 16 51-66 13-28 (201)
316 1ya0_A SMG-7 transcript varian 27.2 1.8E+02 0.006 29.2 8.2 78 310-390 154-233 (497)
317 3bge_A Predicted ATPase; struc 27.1 2E+02 0.0068 24.5 7.1 46 176-221 8-56 (201)
318 4gq2_M Nucleoporin NUP120; bet 27.0 4.6E+02 0.016 28.7 12.3 48 310-358 899-950 (950)
319 1n11_A Ankyrin; clathrin, BAND 26.7 1.7E+02 0.0058 28.3 8.2 17 150-166 86-102 (437)
320 2fe3_A Peroxide operon regulat 26.2 2E+02 0.0069 22.9 7.1 60 97-157 13-72 (145)
321 2rfa_A Transient receptor pote 25.7 2.9E+02 0.0099 23.4 8.8 20 218-237 162-181 (232)
322 3ygs_P Procaspase 9; apoptosis 25.2 95 0.0033 22.9 4.5 38 256-293 51-88 (97)
323 2xig_A Ferric uptake regulatio 24.8 2E+02 0.0069 23.0 6.9 61 96-157 17-77 (150)
324 1ya0_A SMG-7 transcript varian 24.2 1.9E+02 0.0064 29.0 7.8 78 346-423 154-232 (497)
325 4aez_C MAD3, mitotic spindle c 24.2 3.4E+02 0.012 23.6 8.4 82 157-240 100-183 (223)
326 2xig_A Ferric uptake regulatio 24.0 2.1E+02 0.0072 23.0 6.8 46 176-221 30-75 (150)
327 1bpo_A Protein (clathrin); cla 23.9 5.3E+02 0.018 25.4 11.7 102 120-225 343-447 (494)
328 3qye_A TBC1 domain family memb 23.3 4.4E+02 0.015 24.3 10.8 130 86-222 164-309 (331)
329 2nsz_A Programmed cell death p 23.2 2.7E+02 0.0091 21.7 9.8 63 245-307 10-77 (129)
330 3ctd_A Putative ATPase, AAA fa 23.2 2.6E+02 0.0088 24.1 7.2 69 171-239 31-107 (213)
331 3ljn_A Hypothetical protein; a 23.2 1.6E+02 0.0054 27.6 7.0 215 110-333 21-266 (364)
332 3b7b_A Euchromatic histone-lys 23.2 3E+02 0.01 23.4 8.5 21 248-268 213-233 (237)
333 2wvi_A Mitotic checkpoint seri 23.0 3.2E+02 0.011 22.5 10.2 83 56-144 46-134 (164)
334 3b7b_A Euchromatic histone-lys 22.5 1.2E+02 0.0042 26.0 5.7 19 148-166 81-99 (237)
335 3eu9_A Huntingtin-interacting 22.4 1.4E+02 0.0049 25.5 6.1 19 148-166 80-98 (240)
336 2pnn_A Transient receptor pote 22.4 1.7E+02 0.0058 25.9 6.7 58 73-131 13-79 (273)
337 3kae_A CDC27, possible protein 22.0 3.5E+02 0.012 22.6 17.1 79 254-334 45-140 (242)
338 2b7e_A PRE-mRNA processing pro 21.8 69 0.0024 21.2 2.7 30 87-116 2-31 (59)
339 3aji_A 26S proteasome non-ATPa 21.8 2E+02 0.0069 24.4 6.9 13 52-64 15-27 (231)
340 4b4t_S RPN3, 26S proteasome re 21.3 3E+02 0.01 27.5 8.5 65 309-375 232-301 (523)
341 2yru_A Steroid receptor RNA ac 21.0 1.1E+02 0.0038 23.6 4.2 43 93-135 48-90 (118)
342 4ets_A Ferric uptake regulatio 20.7 1.8E+02 0.0061 23.8 5.8 69 88-157 14-85 (162)
343 1bd8_A P19INK4D CDK4/6 inhibit 20.5 1.3E+02 0.0044 23.8 5.0 7 256-262 112-118 (156)
344 4b4t_S RPN3, 26S proteasome re 20.4 2.2E+02 0.0074 28.6 7.2 61 377-439 231-298 (523)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-39 Score=342.75 Aligned_cols=427 Identities=10% Similarity=0.000 Sum_probs=377.0
Q ss_pred CCHHHHHHHHhcC---CCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccC--CCCChhhHHHHHHH
Q 046803 6 PHSPAYEAILKAG---PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI--PSPDSFLFNTLIIR 80 (580)
Q Consensus 6 p~~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~--~~~~~~~~~~li~~ 80 (580)
|+...|..++..+ ++.+.+..++..+++ ..|+...++.+...+...|++++|.++|+.+ ..++..+|+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 5667778888766 566888889988885 4567788899999999999999999999998 46899999999999
Q ss_pred HHcCCCccHHHHHHHHHHHC---------------CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHH-
Q 046803 81 NSKANFSTDSLLFYRRMIVS---------------NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ- 144 (580)
Q Consensus 81 ~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~- 144 (580)
|.+.|++++|+++|+++... |..++..+|..++.++.+.|++++|.+.|+++++.+.. +...+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHH
Confidence 99999999999999953221 22345789999999999999999999999999987632 33332
Q ss_pred -------------------------------------HHHHHHHHhCCCHHHHHHHHccCCC--CChhHHHHHHHHHHhC
Q 046803 145 -------------------------------------AALVNFYAKSNNVDVARKVFDRMPD--KSVVAWNSMISGYEQN 185 (580)
Q Consensus 145 -------------------------------------~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~ 185 (580)
+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 3335667788999999999999988 7999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHH
Q 046803 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265 (580)
Q Consensus 186 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 265 (580)
|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..++..+.+.. +.+..+++.++.+|.++|++++|.++|
T Consensus 319 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 319 SRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999765 4477899999999999999999999999999765 678999999999999999999999999
Q ss_pred HhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC
Q 046803 266 DMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342 (580)
Q Consensus 266 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 342 (580)
+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.|++++|.++|+++.+. .+.
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 473 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQY 473 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 98863 568899999999999999999999999999853 347789999999999999999999999999864 234
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcC------CCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIG------EKPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
+..+|+.++.+|.+.|++++|.++|++++. ..|+ ..+|..++.+|.+.|++++|+..++++++.+|+++.+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 688999999999999999999999977763 3777 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 415 VMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 415 ~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..++.+|.+.|++++|.+.++++.+.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-36 Score=321.51 Aligned_cols=411 Identities=8% Similarity=-0.057 Sum_probs=358.9
Q ss_pred CCCCHHHHHHHHhcC---CCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCC-CC----------
Q 046803 4 KQPHSPAYEAILKAG---PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP-SP---------- 69 (580)
Q Consensus 4 ~~p~~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~-~~---------- 69 (580)
..||..++..+..+| ++.+.+..++..+.. ..+++.+++.++..|.+.|++++|.++|+++. ..
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 457888887777665 566788888877653 36789999999999999999999999999544 33
Q ss_pred --------ChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHH------------------------------
Q 046803 70 --------DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA------------------------------ 111 (580)
Q Consensus 70 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~------------------------------ 111 (580)
++.+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 4889999999999999999999999999885422 2222222
Q ss_pred --------HHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHH
Q 046803 112 --------VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMIS 180 (580)
Q Consensus 112 --------ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 180 (580)
++..+.+.|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 347 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLA 347 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHH
Confidence 244556788999999999998776 58899999999999999999999999998853 47789999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHH
Q 046803 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260 (580)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 260 (580)
+|.+.|++++|.++|+++.+.. +.+..++..++.+|.+.|++++|.++|..+.+.. +.+..+++.++.+|.+.|++++
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998653 5578899999999999999999999999999875 5678899999999999999999
Q ss_pred HHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 261 AREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 261 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.
T Consensus 426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999998864 478899999999999999999999999999853 336789999999999999999999999999764
Q ss_pred c---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 338 Y---GLLPG--VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 338 ~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
. +..|+ ..+|..++.+|.+.|++++|.+.+++++...| +..+|..+..+|...|++++|.+.++++++++|+++
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 2 56787 78999999999999999999999988887777 689999999999999999999999999999999999
Q ss_pred chHHHHHHHHH
Q 046803 412 GHYVMLSNIYA 422 (580)
Q Consensus 412 ~~~~~l~~~y~ 422 (580)
..+..|+++|.
T Consensus 585 ~~~~~l~~~~~ 595 (597)
T 2xpi_A 585 MASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.9e-27 Score=240.39 Aligned_cols=370 Identities=11% Similarity=0.039 Sum_probs=305.3
Q ss_pred HHhccCChhHHHHHHccCC---CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHH
Q 046803 49 LVCDAGFITYAQRIFFCIP---SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125 (580)
Q Consensus 49 ~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 125 (580)
.+.+.|++++|.+.|+.+. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+...|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 3447889999998887654 2355677777788888999999999998887653 34667888888889999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 046803 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202 (580)
Q Consensus 126 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 202 (580)
...++++++.. +.+...+..+..+|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.+..
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999998875 44566788899999999999999999887754 3 45677888888888999999999999988752
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHH
Q 046803 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAM 279 (580)
Q Consensus 203 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 279 (580)
+.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++..+ .+..+|..+
T Consensus 166 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 243 (388)
T 1w3b_A 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHH
Confidence 3346788888888999999999999999998876 55677888889999999999999999887653 357788889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 358 (580)
...|...|++++|+..|+++.+. .| +..++..+..++.+.|++++|...|+++.+. .+.+...+..++..+.+.|
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcC
Confidence 99999999999999999998884 34 4567888888999999999999999998763 3456788888999999999
Q ss_pred CHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 359 LLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 359 ~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
++++|.+.+++++...|+ ..++..+...+.+.|++++|+..++++++..|+++..|..++.+|...|+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999888888775 77888999999999999999999999999999999999999888877663
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.6e-27 Score=237.52 Aligned_cols=353 Identities=12% Similarity=0.073 Sum_probs=311.5
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Q 046803 77 LIIRNSKANFSTDSLLFYRRMIVSNISPSN-YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155 (580)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 155 (580)
+...+.+.|++++|++.++++.+. .|+. ..+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345677889999999999998875 4544 455566667788999999999999998875 567889999999999999
Q ss_pred CHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhCCChHHHHHHHH
Q 046803 156 NVDVARKVFDRMPD--K-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS-TTCVCVLAACAQLGDIDLGRWVHE 231 (580)
Q Consensus 156 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~ 231 (580)
++++|...|+++.+ | +..+|..+..++.+.|++++|++.|+++.+. .|+. ..+..+...+...|++++|.+.+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998753 3 5668999999999999999999999999885 4554 467778888899999999999999
Q ss_pred HHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-C
Q 046803 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-N 307 (580)
Q Consensus 232 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d 307 (580)
.+.+.. +.+..+++.+..+|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .| +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCC
Confidence 999875 56788999999999999999999999999874 45678999999999999999999999999874 45 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHH
Q 046803 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLG 385 (580)
Q Consensus 308 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~ 385 (580)
..++..+..++...|++++|...|+++.+. .| +...|..++..|.+.|++++|.+.|++++...| +..+|..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 678889999999999999999999999852 34 578899999999999999999999988887777 5889999999
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999763
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.6e-28 Score=253.48 Aligned_cols=183 Identities=14% Similarity=0.135 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCC---------hHHHHHHHHHHHHcCCCCcHH
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD---------IDLGRWVHEFIVGQGLDVNVV 243 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 243 (580)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34667777777777777777777777777777777777777777766543 466777777777777777777
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSE----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 319 (580)
+||+||++|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 777777777777777777777777763 6777777777777777777777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 356 (580)
+.|++++|.++|++|.+ .+..|+..+|+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 77777777777777764 3777777777777777654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.4e-28 Score=252.09 Aligned_cols=211 Identities=13% Similarity=0.039 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccC
Q 046803 89 DSLLFYRRMIVSNISPSN-YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167 (580)
Q Consensus 89 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 167 (580)
.+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 455666777777665544 357888889999999999999999999999999999999998888877754322
Q ss_pred CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhH
Q 046803 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247 (580)
Q Consensus 168 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 247 (580)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+||+
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 23455788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhhhcCCHHHHHHHHHhccC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046803 248 LINMYARCGNVSKAREIFDMMSE----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321 (580)
Q Consensus 248 li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 321 (580)
||.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..+...
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999974 899999999999999999999999999999999999999999999988764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.4e-23 Score=212.49 Aligned_cols=308 Identities=10% Similarity=-0.011 Sum_probs=206.7
Q ss_pred CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 046803 69 PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148 (580)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 148 (580)
.++..|..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...+..+++.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 356678888889999999999999999888752 3367778888888888999999999999988876 44577888888
Q ss_pred HHHHhCCCHHHHHHHHccCCCC---Ch---hHHHHHHHH------------HHhCCChhHHHHHHHHHHHCCCCCChhHH
Q 046803 149 NFYAKSNNVDVARKVFDRMPDK---SV---VAWNSMISG------------YEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210 (580)
Q Consensus 149 ~~y~~~g~~~~A~~~f~~~~~~---~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 210 (580)
.+|.+.|++++|.+.|+++.+. +. ..|..++.. +.+.|++++|+..|+++.+.. +.+...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 8888888888888888887652 23 556555443 677777777777777776642 3355566
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C-ChHHHHHH--------
Q 046803 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L-NVIAWTAM-------- 279 (580)
Q Consensus 211 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------- 279 (580)
..+..++...|++++|..++..+.+.. +.+..++..+..+|.+.|++++|...|+++.+ | +...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 677777777777777777777776654 45566677777777777777777777766643 2 23333333
Q ss_pred ----HHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 046803 280 ----ISGYGMHGYGTEAVELFHRMRAHGVRPN-----NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350 (580)
Q Consensus 280 ----i~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 350 (580)
...+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...++.+.+. .+.+...|..+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 335 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 55566666666666666666652 333 234555556666666666666666665532 12245566666
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHH
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAML 384 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll 384 (580)
..+|...|++++|.+.+++++...|+ ..++..+.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 66666666666666666666666553 44444444
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.8e-23 Score=215.45 Aligned_cols=340 Identities=11% Similarity=0.022 Sum_probs=279.0
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC
Q 046803 90 SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD 169 (580)
Q Consensus 90 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 169 (580)
+...|.+..... +.+...+..+...+...|++++|..+++.+++.. +.+...+..+..+|.+.|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444444331 2355678888889999999999999999999875 55788999999999999999999999998764
Q ss_pred ---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh----hHHHHH------------HHHHHhCCChHHHHHHH
Q 046803 170 ---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS----TTCVCV------------LAACAQLGDIDLGRWVH 230 (580)
Q Consensus 170 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~a~~~~~~~~~a~~~~ 230 (580)
.+..+|..+...|.+.|++++|++.|+++.+. .|+. ..+..+ ...+...|++++|...+
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 36789999999999999999999999999875 4543 454444 44488899999999999
Q ss_pred HHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 046803 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307 (580)
Q Consensus 231 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 307 (580)
..+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++.+. .|+
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 243 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQD 243 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 9999875 66888999999999999999999999998864 57889999999999999999999999999874 555
Q ss_pred HHH-HHHH------------HHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhHcC
Q 046803 308 NVT-FVAV------------LSACAHAGLVQEGHRVFASMRQEYGLLPG--VEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372 (580)
Q Consensus 308 ~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 372 (580)
... +..+ ..+|.+.|++++|...|+.+.+...-.|. ..++..++.++.+.|++++|++.+++++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 443 3333 78899999999999999999864222111 45788999999999999999999988887
Q ss_pred CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHH------------HHHHhcC-----ChhHHHHHH
Q 046803 373 EKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS------------NIYALAG-----RMDRVEVVR 434 (580)
Q Consensus 373 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~y~~~g-----~~~~a~~~~ 434 (580)
..| +..+|..+..+|...|++++|...+++++++.|+++..+..++ +.|...| +.+++.+.+
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y 403 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAY 403 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHH
Confidence 777 5899999999999999999999999999999999999999998 4455555 556667777
Q ss_pred HH
Q 046803 435 NI 436 (580)
Q Consensus 435 ~~ 436 (580)
++
T Consensus 404 ~~ 405 (450)
T 2y4t_A 404 RK 405 (450)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.5e-24 Score=222.47 Aligned_cols=388 Identities=8% Similarity=-0.065 Sum_probs=306.4
Q ss_pred HHHHHhccCChhHHHHHHccCCC--CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChH
Q 046803 46 LLSLVCDAGFITYAQRIFFCIPS--PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123 (580)
Q Consensus 46 ll~~~~~~~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 123 (580)
+-..+...|++++|.+.|+++.. ||..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+..++...|+++
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 33455588899999999887753 788888888899999999999999999888754 225567888888888889999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH--------------------------------------c
Q 046803 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF--------------------------------------D 165 (580)
Q Consensus 124 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f--------------------------------------~ 165 (580)
+|...+..+.+.+. ++......++..+.+......+.+.+ .
T Consensus 91 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 91 DAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 99999998888763 33333333333333322222221111 1
Q ss_pred cCCC---------C-ChhHHHHHHHHHHh---CCChhHHHHHHHHHHH-----CCCCC--------ChhHHHHHHHHHHh
Q 046803 166 RMPD---------K-SVVAWNSMISGYEQ---NGFAKEAIGLFNLMRD-----FGVNP--------DSTTCVCVLAACAQ 219 (580)
Q Consensus 166 ~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll~a~~~ 219 (580)
.... + +...|......+.. .|++++|+..|+++.+ ....| +..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 1100 1 13445555555554 8999999999999987 31122 34577888889999
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHH
Q 046803 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELF 296 (580)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 296 (580)
.|++++|...+..+.+.... ..++..+..+|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999988633 88899999999999999999999998765 46778999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 297 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
++..+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.+++++...|+
T Consensus 328 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 328 DKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 99998532 256788889999999999999999999998642 235678888999999999999999999887744442
Q ss_pred -------HHHHHHHHHHHHh---cCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 377 -------PAVWTAMLGACKM---HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 377 -------~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..+|..+...+.. .|++++|...++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3489999999999 999999999999999999999999999999999999999999999999874
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.6e-23 Score=217.82 Aligned_cols=394 Identities=8% Similarity=-0.038 Sum_probs=314.6
Q ss_pred cCCCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCC---CCChhhHHHHHHHHHcCCCccHHHHH
Q 046803 17 AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP---SPDSFLFNTLIIRNSKANFSTDSLLF 93 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 93 (580)
..++.+.+...+..+++.. |++..+..+...+...|++++|.+.|+.+. +.+..+|..+...|.+.|++++|+..
T Consensus 18 ~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4467788999999998876 688899999999999999999999999764 35677999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH-----------------------------------HhCC-
Q 046803 94 YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF-----------------------------------VSGY- 137 (580)
Q Consensus 94 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-----------------------------------~~g~- 137 (580)
|+++...+. ++......++..+........+.+.+..+. ....
T Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 96 LSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 999988753 344444444443333222222221111100 0000
Q ss_pred --------CCchHHHHHHHHHHHh---CCCHHHHHHHHccCCC----------------C-ChhHHHHHHHHHHhCCChh
Q 046803 138 --------DSDLHVQAALVNFYAK---SNNVDVARKVFDRMPD----------------K-SVVAWNSMISGYEQNGFAK 189 (580)
Q Consensus 138 --------~~~~~~~~~li~~y~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~~ 189 (580)
+.+...+..+...+.. .|++++|...|+++.+ + +..+|..+...+...|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 1124444444454554 8999999999987654 1 3468889999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 190 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
+|+..|+++.+.. |+...+..+..++...|++++|...+..+.+.. +.+..++..+..+|...|++++|...|+++.
T Consensus 255 ~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 255 GAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998864 447788999999999999999999999999875 5678889999999999999999999999876
Q ss_pred C---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---
Q 046803 270 E---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG--- 343 (580)
Q Consensus 270 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--- 343 (580)
+ .+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+...-.++
T Consensus 332 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 410 (514)
T 2gw1_A 332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV 410 (514)
T ss_dssp HTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS
T ss_pred HhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH
Confidence 3 457789999999999999999999999998752 235678888999999999999999999998764333333
Q ss_pred -HHHHHHHHHHHHH---cCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 344 -VEHHVCMVDLFGR---AGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 344 -~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
...+..+...+.+ .|++++|.+.+++.+...| +..+|..+...+...|++++|...+++++++.|.++..+..+
T Consensus 411 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4488889999999 9999999999988887777 488899999999999999999999999999999987776655
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=8e-21 Score=200.18 Aligned_cols=387 Identities=9% Similarity=0.013 Sum_probs=284.8
Q ss_pred hhchHHHHHhccCChhHHHHHHccCC---CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 046803 42 MLTKLLSLVCDAGFITYAQRIFFCIP---SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118 (580)
Q Consensus 42 ~~~~ll~~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 118 (580)
.+..+-..+.+.|++++|.+.|+.+. +.++.+|..+...|.+.|++++|++.|+++...+ +.+..++..+...+..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 34444455667778888888887654 2466778888888888888888888888877653 2255667777777778
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC-----------------------------
Q 046803 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD----------------------------- 169 (580)
Q Consensus 119 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----------------------------- 169 (580)
.|++++|...++ .+.. .|+. .+..+..+...+....|...++.+..
T Consensus 106 ~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 888888888775 3322 1211 11112222333333444444443322
Q ss_pred --------CChh---HHHHHHHHHHh--------CCChhHHHHHHHHHHHCCCCCC--------hhHHHHHHHHHHhCCC
Q 046803 170 --------KSVV---AWNSMISGYEQ--------NGFAKEAIGLFNLMRDFGVNPD--------STTCVCVLAACAQLGD 222 (580)
Q Consensus 170 --------~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~a~~~~~~ 222 (580)
.+.. .+..+...+.. .|++++|+.+|+++.+. .|+ ..++..+...+...|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 1111 22233322222 24789999999999875 344 2346667778889999
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046803 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRM 299 (580)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 299 (580)
+++|...+..+.+.. |+...+..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|++.
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999875 4488899999999999999999999998764 46788999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC----
Q 046803 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP---- 375 (580)
Q Consensus 300 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---- 375 (580)
.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.+++++...|
T Consensus 337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 9853 224578888999999999999999999999864 233577888899999999999999999987763322
Q ss_pred ---CHHHHHHHHHHHHhc----------CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 376 ---APAVWTAMLGACKMH----------KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 376 ---~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
....+..+...+... |++++|+..++++++..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 123345556777777 999999999999999999999999999999999999999999999998743
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.3e-19 Score=179.91 Aligned_cols=306 Identities=10% Similarity=-0.012 Sum_probs=191.6
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHH
Q 046803 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGY 182 (580)
Q Consensus 106 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 182 (580)
...+..+...+...|++++|...+..+++.. +.+...+..+...|...|++++|...|++..+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3445556666666777777777777776654 33455666666666666777777666665542 2445666666666
Q ss_pred HhCCChhHHHHHHHHHHHCCCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCH
Q 046803 183 EQNGFAKEAIGLFNLMRDFGVNP----DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258 (580)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 258 (580)
...|++++|+..|++..+. .| +...+..+..... ...+..+...|...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 6666666666666666653 33 2222222210000 00111224556666666
Q ss_pred HHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 259 SKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 259 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666665542 345566666666666666666666666666532 2244556666666666677777777666665
Q ss_pred HhcCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHhHcCCCCC-H----HHHHHHHHHHHhcCCchHHHH
Q 046803 336 QEYGLLPGVEHHV------------CMVDLFGRAGLLNEAYKFVKDVIGEKPA-P----AVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 336 ~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~p~-~----~~~~~ll~~~~~~g~~~~a~~ 398 (580)
+... .+...+. .+...+.+.|++++|.+.+++.+...|+ . ..+..+...+...|++++|+.
T Consensus 216 ~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhCc--cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 4321 1122221 2356677888888888888777765664 2 224456778888888888888
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888888764
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.5e-20 Score=198.11 Aligned_cols=389 Identities=10% Similarity=0.002 Sum_probs=298.6
Q ss_pred cCCCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCC---CCChhhHHHHHHHHHcCCCccHHHHH
Q 046803 17 AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP---SPDSFLFNTLIIRNSKANFSTDSLLF 93 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 93 (580)
..++.+.+...+..+++... .++..+..+...+...|++++|.+.|+.+. +.+..+|..+...+.+.|++++|+..
T Consensus 37 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44677888899998888652 367788888888999999999999999764 35678899999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhC------CCCchH-------------------------
Q 046803 94 YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG------YDSDLH------------------------- 142 (580)
Q Consensus 94 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g------~~~~~~------------------------- 142 (580)
|+.+. ..|+... ..+..+...+....+...+..++... ..|+..
T Consensus 116 ~~~~~---~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 116 LSVLS---LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHh---cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 97442 2233221 11223333444566777777664421 111111
Q ss_pred -----HHHHHHHHHHhC--------CCHHHHHHHHccCCCC--C--------hhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 046803 143 -----VQAALVNFYAKS--------NNVDVARKVFDRMPDK--S--------VVAWNSMISGYEQNGFAKEAIGLFNLMR 199 (580)
Q Consensus 143 -----~~~~li~~y~~~--------g~~~~A~~~f~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 199 (580)
....+...+... |++++|..+|+++.+. + ..+|..+...+...|++++|+..|++..
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 333344443333 4789999999887652 2 2357777888999999999999999999
Q ss_pred HCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHH
Q 046803 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAW 276 (580)
Q Consensus 200 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~ 276 (580)
+. .|+...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+...|
T Consensus 271 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 271 NL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp HH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred hc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 85 5677888999999999999999999999999876 56788999999999999999999999998864 456789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC----CHHHHHHHHH
Q 046803 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP----GVEHHVCMVD 352 (580)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~ 352 (580)
..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+..
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999999999853 33456888889999999999999999999875432112 2233445667
Q ss_pred HHHHc----------CCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHH
Q 046803 353 LFGRA----------GLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415 (580)
Q Consensus 353 ~~~~~----------g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 415 (580)
.|.+. |++++|...|++.+...| +..+|..+...+...|++++|...+++++++.|.++....
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 78888 999999999988887777 4888999999999999999999999999999998766544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=9.1e-20 Score=181.12 Aligned_cols=327 Identities=11% Similarity=0.019 Sum_probs=232.2
Q ss_pred ChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 046803 70 DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149 (580)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 149 (580)
|+..|..+...+.+.|++++|+..|+++..... .+..++..+...+...|++++|...+..+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 456788899999999999999999999988632 356788888899999999999999999999885 446788999999
Q ss_pred HHHhCCCHHHHHHHHccCCCCC------hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCCh
Q 046803 150 FYAKSNNVDVARKVFDRMPDKS------VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223 (580)
Q Consensus 150 ~y~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 223 (580)
+|.+.|++++|...|++..+.+ ...|..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 9999999999999999886532 234443321100 01122233344455555
Q ss_pred HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046803 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMR 300 (580)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 300 (580)
++|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|...|++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555443 33445555555555555666666555555442 344556666666666666666666666665
Q ss_pred hCCCCCCH-HH------------HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q 046803 301 AHGVRPNN-VT------------FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG--VEHHVCMVDLFGRAGLLNEAYK 365 (580)
Q Consensus 301 ~~g~~pd~-~t------------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~ 365 (580)
+. .|+. .. ...+...+...|++++|...++.+.+...-.+. ...+..+...+...|++++|.+
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 53 2322 11 123356688899999999999988764322111 1335567889999999999999
Q ss_pred HHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046803 366 FVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 366 ~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 424 (580)
.+++.+...| ++.+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9988887777 5888999999999999999999999999999999988888887776543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.2e-19 Score=176.34 Aligned_cols=287 Identities=11% Similarity=0.039 Sum_probs=217.1
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHH
Q 046803 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214 (580)
Q Consensus 138 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 214 (580)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44455556666667777777777777766543 244566667777777788888888887777642 33556777777
Q ss_pred HHHHhCC-ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChH
Q 046803 215 AACAQLG-DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGT 290 (580)
Q Consensus 215 ~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 290 (580)
..+...| ++++|...+..+.+.. +.+...+..+..+|...|++++|.+.|+++.+ .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7888888888877765 45667777888888888888888888887663 34567777888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC-------CCCHHHHHHHHHHHHHcCCHHHH
Q 046803 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL-------LPGVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 291 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-------~p~~~~~~~li~~~~~~g~~~~A 363 (580)
+|+..|++..+.. +.+...+..+...+...|++++|...++.+.+...- +.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888742 234567778888888889999999888888754211 23467888899999999999999
Q ss_pred HHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH-hcCCh
Q 046803 364 YKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA-LAGRM 427 (580)
Q Consensus 364 ~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~-~~g~~ 427 (580)
.+.+++.+...| +..+|..+...+...|++++|...+++++++.|+++..+..++.++. ..|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 999988887666 47788899999999999999999999999999999999999988884 55554
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=2.6e-20 Score=183.42 Aligned_cols=285 Identities=10% Similarity=0.033 Sum_probs=138.3
Q ss_pred ccCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 046803 52 DAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 131 (580)
+.+++++|.+++++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5668999999999997765 8999999999999999999999763 5778999999999999999999998888
Q ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHH
Q 046803 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211 (580)
Q Consensus 132 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 211 (580)
+.+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 45678899999999999999999988864 67789999999999999999999999977 4899
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHH
Q 046803 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291 (580)
Q Consensus 212 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 291 (580)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999999988 378999999999999999999988777655 444445578999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhHHhcCCCC------CHHHHHHHHHHHHHcCCHHHH
Q 046803 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHA--GLVQEGHRVFASMRQEYGLLP------GVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 292 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A 363 (580)
|+.+++...... +-....|+.+.-+|++- +++.+..+.|. ++.+++| +...|..++-.|...++++.|
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 999999988643 33345666666566543 34444444443 3335555 467889999999999999999
Q ss_pred HHHHHh
Q 046803 364 YKFVKD 369 (580)
Q Consensus 364 ~~~~~~ 369 (580)
...+-+
T Consensus 302 ~~tm~~ 307 (449)
T 1b89_A 302 IITMMN 307 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876633
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.9e-18 Score=167.33 Aligned_cols=265 Identities=12% Similarity=0.065 Sum_probs=231.6
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHh
Q 046803 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249 (580)
Q Consensus 170 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 249 (580)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..++..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466678888999999999999999999998763 3455677778888899999999999999999875 66788899999
Q ss_pred hHhhhcC-CHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 046803 250 NMYARCG-NVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325 (580)
Q Consensus 250 ~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 325 (580)
..|...| ++++|.+.|++..+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998774 456789999999999999999999999999853 224567777889999999999
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC----------CCCHHHHHHHHHHHHhcCCchH
Q 046803 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE----------KPAPAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 326 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~p~~~~~~~ll~~~~~~g~~~~ 395 (580)
+|...++.+.+ ..+.+...+..+...|.+.|++++|.+.+++.+.. ..+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999974 22335788999999999999999999999877733 2246789999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
|+..++++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998765
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=6.6e-19 Score=175.91 Aligned_cols=282 Identities=11% Similarity=-0.051 Sum_probs=222.1
Q ss_pred HHhCCCHHHHHH-HHccCCC-----C--ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCC
Q 046803 151 YAKSNNVDVARK-VFDRMPD-----K--SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222 (580)
Q Consensus 151 y~~~g~~~~A~~-~f~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 222 (580)
|.-.|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334577888887 7775443 1 34568888888889999999999999888763 3456678888888888999
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C-ChHHHHH---------------HHHHHH
Q 046803 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L-NVIAWTA---------------MISGYG 284 (580)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 284 (580)
+++|...+..+.+.. +.+..++..+..+|...|++++|.+.|+++.+ | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999998888876 56778888888899999999999998887764 2 2222221 133334
Q ss_pred hcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046803 285 MHGYGTEAVELFHRMRAHGVR-PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 363 (580)
..|++++|+..|+++.+.... ++..++..+...+...|++++|...|+++.+. .+.+...+..+...|.+.|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999999884322 14788889999999999999999999999864 233578899999999999999999
Q ss_pred HHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCChhHHH
Q 046803 364 YKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN-----------PGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 364 ~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~~~a~ 431 (580)
.+.+++++...|+ ..+|..+..++...|++++|...+++++++.|++ +.+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999888877774 8889999999999999999999999999988877 789999999999999999999
Q ss_pred HHHHH
Q 046803 432 VVRNI 436 (580)
Q Consensus 432 ~~~~~ 436 (580)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 98764
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=6e-17 Score=170.30 Aligned_cols=393 Identities=11% Similarity=0.069 Sum_probs=294.5
Q ss_pred ChhhhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046803 39 SRSMLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115 (580)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 115 (580)
|...|..++. +...++++.|+.+|+++.+ .+...|...+..+.+.|++++|..+|++.+.. .|+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 6778888886 4678999999999998754 35668999999999999999999999999875 4677766666643
Q ss_pred H-HccCChHHHHH----HHHHHHHh-CCCC-chHHHHHHHHHHHh---------CCCHHHHHHHHccCCC-CC---hhHH
Q 046803 116 C-AHLSILNLGRA----VHCHVFVS-GYDS-DLHVQAALVNFYAK---------SNNVDVARKVFDRMPD-KS---VVAW 175 (580)
Q Consensus 116 ~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~f~~~~~-~~---~~~~ 175 (580)
. ...|+.+.|++ +|+.+++. |..| +..+|...+....+ .|+++.|+.+|++..+ |+ ...|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 34577776655 77777654 5443 56788888887765 6889999999998765 22 1344
Q ss_pred HHHHHHH-------------HhCCChhHHHHHHHHHH------HCC---CCCCh--------hHHHHHHHHHHhC----C
Q 046803 176 NSMISGY-------------EQNGFAKEAIGLFNLMR------DFG---VNPDS--------TTCVCVLAACAQL----G 221 (580)
Q Consensus 176 ~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~~--------~t~~~ll~a~~~~----~ 221 (580)
....... .+.+++.+|..++.... +.. ++|+. ..|...+...... +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 4332211 12356777877776632 211 24431 3444444333221 2
Q ss_pred Ch----HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh-------cCCHH-------HHHHHHHhccC---C-ChHHHHHH
Q 046803 222 DI----DLGRWVHEFIVGQGLDVNVVLATSLINMYAR-------CGNVS-------KAREIFDMMSE---L-NVIAWTAM 279 (580)
Q Consensus 222 ~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~l 279 (580)
+. +.+..+|+++++.. +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 32 36778899988874 6678889888888876 79987 99999998764 3 57789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHH-HH
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNN--VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDL-FG 355 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~-~~ 355 (580)
+..+.+.|++++|..+|+++.+ ..|+. ..|...+..+.+.|++++|.++|++..+. .| +...|...+.+ +.
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHH
Confidence 9999999999999999999998 45653 47888888888999999999999999753 33 33334333322 34
Q ss_pred HcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc----hHHHHHHHHHhcCChhHH
Q 046803 356 RAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG----HYVMLSNIYALAGRMDRV 430 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~~~g~~~~a 430 (580)
..|++++|..+|++++...| ++..|..++..+...|+.++|..+|+++++..|.++. .|...+......|+.+.+
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 68999999999988887777 4889999999999999999999999999998877665 777778888899999999
Q ss_pred HHHHHHHHhC
Q 046803 431 EVVRNIMIQK 440 (580)
Q Consensus 431 ~~~~~~m~~~ 440 (580)
.++.+++.+.
T Consensus 483 ~~~~~r~~~~ 492 (530)
T 2ooe_A 483 LKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1.1e-18 Score=174.24 Aligned_cols=262 Identities=9% Similarity=-0.082 Sum_probs=218.8
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhh
Q 046803 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250 (580)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 250 (580)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...+.++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45678999999999999999999999998763 4467789999999999999999999999999875 567889999999
Q ss_pred HhhhcCCHHHHHHHHHhccCCC-------------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 046803 251 MYARCGNVSKAREIFDMMSELN-------------VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR-PNNVTFVAVLS 316 (580)
Q Consensus 251 ~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~ 316 (580)
+|.+.|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999887421 223344578899999999999999999985322 25788999999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~ 395 (580)
.+...|++++|...|+++.+. .+.+...|..+..+|.+.|++++|++.|++++...|+ ..+|..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999864 2345889999999999999999999999998888885 8889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 396 GVEVAEHLLSVEPE------------NPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 396 a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
|...+++++++.|+ +...+..|+.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876 367889999999999999998887664
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=5.6e-16 Score=161.24 Aligned_cols=352 Identities=12% Similarity=0.015 Sum_probs=289.9
Q ss_pred CCChhhHHHHHHHHHc----CCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCC
Q 046803 68 SPDSFLFNTLIIRNSK----ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH----LSILNLGRAVHCHVFVSGYDS 139 (580)
Q Consensus 68 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~ 139 (580)
..|+.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|...+.++.+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3467777777777777 789999999999988764 55667777777777 889999999999988875
Q ss_pred chHHHHHHHHHHHh----CCCHHHHHHHHccCCCC-ChhHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhHH
Q 046803 140 DLHVQAALVNFYAK----SNNVDVARKVFDRMPDK-SVVAWNSMISGYEQ----NGFAKEAIGLFNLMRDFGVNPDSTTC 210 (580)
Q Consensus 140 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 210 (580)
+...+..|..+|.. .+++++|.+.|++..+. +..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677778888888 88999999999876553 66788888888887 789999999999998865 67778
Q ss_pred HHHHHHHHh----CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh----cCCHHHHHHHHHhccC-CChHHHHHHHH
Q 046803 211 VCVLAACAQ----LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR----CGNVSKAREIFDMMSE-LNVIAWTAMIS 281 (580)
Q Consensus 211 ~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 281 (580)
..+...+.. .++.++|..++....+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888877 789999999999998875 45677788888876 7899999999998765 56677888888
Q ss_pred HHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 282 GYGM----HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA-----GLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 282 ~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
.|.. .++.++|+..|++..+.| +...+..+...|... ++.++|...|++..+. .+...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 8887 899999999999988764 455666777777777 8999999999998753 34567777888
Q ss_pred HHHHcC---CHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHh--
Q 046803 353 LFGRAG---LLNEAYKFVKDVIGEKPAPAVWTAMLGACKM----HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL-- 423 (580)
Q Consensus 353 ~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-- 423 (580)
+|.+.| ++++|.+.|+++... .++..+..|...|.. .+++++|...++++.+.+ ++.++..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 888766 789999999877754 468889999999988 899999999999998865 57889999999998
Q ss_pred --cCChhHHHHHHHHHHhCC
Q 046803 424 --AGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 424 --~g~~~~a~~~~~~m~~~~ 441 (580)
.+++++|.+.+++..+.+
T Consensus 414 g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 899999999999998865
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=1.8e-16 Score=165.00 Aligned_cols=365 Identities=10% Similarity=0.007 Sum_probs=302.6
Q ss_pred ChhhhchHHHHHhc----cCChhHHHHHHccCCC-CChhhHHHHHHHHHc----CCCccHHHHHHHHHHHCCCCCChhhH
Q 046803 39 SRSMLTKLLSLVCD----AGFITYAQRIFFCIPS-PDSFLFNTLIIRNSK----ANFSTDSLLFYRRMIVSNISPSNYTF 109 (580)
Q Consensus 39 ~~~~~~~ll~~~~~----~~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 109 (580)
++.....|-..|.. .++++.|...|+...+ .+..++..|...|.. .+++++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55555555555555 6799999999986543 577889999999998 899999999999998865 55667
Q ss_pred HHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----CCCHHHHHHHHccCCC-CChhHHHHHHH
Q 046803 110 SAVIKSCAH----LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK----SNNVDVARKVFDRMPD-KSVVAWNSMIS 180 (580)
Q Consensus 110 ~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~ 180 (580)
..+-..+.. .+++++|...++++.+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..|..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777776 789999999999999876 56778888888987 8899999999987654 47788999999
Q ss_pred HHHh----CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh
Q 046803 181 GYEQ----NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ----LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252 (580)
Q Consensus 181 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 252 (580)
.|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|..++....+.| +...+..|..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 9998 899999999999998865 56677778888876 789999999999998875 456677788888
Q ss_pred hh----cCCHHHHHHHHHhccC-CChHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 046803 253 AR----CGNVSKAREIFDMMSE-LNVIAWTAMISGYGMH-----GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322 (580)
Q Consensus 253 ~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 322 (580)
.. .++.++|.+.|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 87 8999999999998875 4677888888888887 89999999999999865 4556777777777766
Q ss_pred ---CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cC
Q 046803 323 ---LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR----AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM----HK 391 (580)
Q Consensus 323 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~----~g 391 (580)
+.++|.++|++..+. .+...+..|..+|.. .+++++|.+.|+++.... ++..+..|...|.. .+
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCC
Confidence 789999999998763 467788889999998 899999999998877543 67888899999988 89
Q ss_pred CchHHHHHHHHHHhcCCC---CcchHHHHHHHHHh
Q 046803 392 NFDLGVEVAEHLLSVEPE---NPGHYVMLSNIYAL 423 (580)
Q Consensus 392 ~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~ 423 (580)
++++|...|+++.+.+|+ ++.....|+.++..
T Consensus 418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 999999999999999854 67777777776654
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=6.9e-17 Score=167.19 Aligned_cols=368 Identities=13% Similarity=0.017 Sum_probs=245.6
Q ss_pred ChhhHHHHHHHHHcCCCccHHHHHHHHHHHC-----C--CCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHhC-----
Q 046803 70 DSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-----N--ISP-SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG----- 136 (580)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----- 136 (580)
.+..||.|...+...|++++|++.|++.++. + ..| ...+|..+...+...|++++|...++++++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888989999999999999999886541 1 123 34578888888999999999999998887641
Q ss_pred -CC-CchHHHHHHHHHHHh--CCCHHHHHHHHccCCC--C-ChhHHHHHHHH---HHhCCChhHHHHHHHHHHHCCCCCC
Q 046803 137 -YD-SDLHVQAALVNFYAK--SNNVDVARKVFDRMPD--K-SVVAWNSMISG---YEQNGFAKEAIGLFNLMRDFGVNPD 206 (580)
Q Consensus 137 -~~-~~~~~~~~li~~y~~--~g~~~~A~~~f~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~ 206 (580)
.. ....+++.+..++.+ .+++++|...|++..+ | +...+..+... +...++.++|++.|++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 11 124556555555544 4578999999987653 3 45556555544 345678888999998887743 234
Q ss_pred hhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHH
Q 046803 207 STTCVCVLAACAQ----LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAM 279 (580)
Q Consensus 207 ~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 279 (580)
...+..+...+.. .++.++|.+++.+..+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 4556555555544 356788999999888875 66778888999999999999999999988764 345567666
Q ss_pred HHHHHhc-------------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 046803 280 ISGYGMH-------------------GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340 (580)
Q Consensus 280 i~~~~~~-------------------g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 340 (580)
...|... +..++|...|++..+.. +.+..++..+...+...|++++|...|++..+. ..
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~ 365 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-EL 365 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CC
Confidence 6655432 33567888888877642 223456778888999999999999999998753 22
Q ss_pred CCCH--HHHHHHHHH-HHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 341 LPGV--EHHVCMVDL-FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 341 ~p~~--~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
.+.. ..+..+... +...|++++|++.|++++.+.|+...+... .+.+..++++.++.+|+++.+|..|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2221 123333332 346899999999999999888875433322 3455677888899999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 046803 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450 (580)
Q Consensus 418 ~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 450 (580)
+.+|...|++++|.+.+++..+.+-......+|
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHCC----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 999999999999999999998876554444454
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=9.5e-17 Score=154.48 Aligned_cols=268 Identities=10% Similarity=-0.019 Sum_probs=215.4
Q ss_pred HHhCCCHHHHHHHHccCCCCCh----hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHH
Q 046803 151 YAKSNNVDVARKVFDRMPDKSV----VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226 (580)
Q Consensus 151 y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 226 (580)
....|+++.|+..++.....+. .....+..+|...|++++|+..++.. -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4567889999998887665432 34456788899999999998866542 356677888888888899999999
Q ss_pred HHHHHHHHHcCC-CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 046803 227 RWVHEFIVGQGL-DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305 (580)
Q Consensus 227 ~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 305 (580)
.+.++.+...+. |.+...+..+..+|.+.|++++|.+.|++ ..+...+..++..|.+.|+.++|...|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 999999888764 44667778888999999999999999998 567889999999999999999999999999985 4
Q ss_pred CCHHHH---HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHH
Q 046803 306 PNNVTF---VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWT 381 (580)
Q Consensus 306 pd~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 381 (580)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.+++++...| ++.+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 665322 12333444568999999999999875 345788999999999999999999999999998888 588999
Q ss_pred HHHHHHHhcCCchH-HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 046803 382 AMLGACKMHKNFDL-GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432 (580)
Q Consensus 382 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 432 (580)
.++..+...|+.++ +.++++++++++|+++.+. +...+.+.++++..
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 99999999999976 6789999999999987643 34555555555544
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=8e-18 Score=168.01 Aligned_cols=276 Identities=13% Similarity=0.049 Sum_probs=208.7
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHH-HHHHHHHCCC-CC--ChhHHHHHHHHHHhCCChHHHHHHH
Q 046803 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG-LFNLMRDFGV-NP--DSTTCVCVLAACAQLGDIDLGRWVH 230 (580)
Q Consensus 155 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~ 230 (580)
+.++.+...|+.+...+.. ++...|++++|++ .|++...... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444555555555443322 3445688999998 8887654311 11 3456888999999999999999999
Q ss_pred HHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 046803 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307 (580)
Q Consensus 231 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 307 (580)
..+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.... |+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~ 164 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PA 164 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC
Confidence 9999886 66888999999999999999999999998764 467899999999999999999999999999853 33
Q ss_pred HH-HHHH---------------HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 308 NV-TFVA---------------VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 308 ~~-t~~~---------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
.. .+.. .+..+...|++++|...|+.+.+.....++...+..+...|.+.|++++|.+.+++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 1111 2334448899999999999998653332358889999999999999999999998888
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 372 GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 372 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
...|+ ..+|..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77774 8899999999999999999999999999999999999999999999999999999999998764
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=4.9e-18 Score=169.59 Aligned_cols=232 Identities=13% Similarity=0.047 Sum_probs=199.8
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHH
Q 046803 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISG 282 (580)
Q Consensus 206 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 282 (580)
+...+..+...+.+.|++++|..++..+++.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568889999999999999999999999886 66889999999999999999999999998874 457899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 046803 283 YGMHGYGTEAVELFHRMRAHGVRPNN-----------VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351 (580)
Q Consensus 283 ~~~~g~~~~A~~~~~~m~~~g~~pd~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 351 (580)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+|+++.+.....++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3332 2233457788999999999999999987533323688999999
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 430 (580)
..|.+.|++++|++.+++++...| +..+|..+..+|...|++++|+..++++++..|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998887777 4889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 046803 431 EVVRNIMIQK 440 (580)
Q Consensus 431 ~~~~~~m~~~ 440 (580)
.+.++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=6.6e-19 Score=173.47 Aligned_cols=282 Identities=11% Similarity=0.088 Sum_probs=138.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHH
Q 046803 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197 (580)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 197 (580)
+.|++++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 557788888888877 23458899999999999999999999764 5667889999999999999999997776
Q ss_pred HHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHH
Q 046803 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277 (580)
Q Consensus 198 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 277 (580)
.++. .+++.+.+.++.+|.+.|+++++.+++. .|+..+|+.+.+.|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 6663 4567788889999999999998887774 367779999999999999999999999987 4899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHc
Q 046803 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357 (580)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 357 (580)
.++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDR 220 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHC
Confidence 9999999999999999999988 2778999999999999999999554432 223445566788999999
Q ss_pred CCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhc--CCchHHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCChhH
Q 046803 358 GLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMH--KNFDLGVEVAEHLLSVEP-----ENPGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 358 g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~ 429 (580)
|++++|..+++..++.++ ....|.-|.-+|.+. ++..+.+++|..-+.+.| .++..|..+...|...++++.
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 999999999999998876 477788887777765 355666666665555556 678899999999999999998
Q ss_pred HHHH
Q 046803 430 VEVV 433 (580)
Q Consensus 430 a~~~ 433 (580)
|...
T Consensus 301 A~~t 304 (449)
T 1b89_A 301 AIIT 304 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.9e-17 Score=162.18 Aligned_cols=260 Identities=8% Similarity=-0.071 Sum_probs=196.7
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 252 (580)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345566666666777777777776666542 2344566666666667777777777777766654 44566666677777
Q ss_pred hhcCCHHHHHHHHHhccC--C-ChHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 046803 253 ARCGNVSKAREIFDMMSE--L-NVIAWTAM--------------IS-GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 314 (580)
...|++++|.+.|+++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777777766553 1 12222222 22 3677788999999999988753 2366788888
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCc
Q 046803 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNF 393 (580)
Q Consensus 315 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~ 393 (580)
...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++.+...| +..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 89999999999999999998763 233578889999999999999999999988887777 488899999999999999
Q ss_pred hHHHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 394 DLGVEVAEHLLSVEPE------------NPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 394 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
++|...++++++..|. ++..+..++.+|...|++++|..++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999998 7889999999999999999999988754
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=8e-16 Score=161.70 Aligned_cols=365 Identities=10% Similarity=0.020 Sum_probs=270.6
Q ss_pred CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 046803 69 PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148 (580)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 148 (580)
.|..+|..++. +.+.|++++|..+|+++... .+-+...|...+..+.+.|+++.|+.+|+++++.. |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 47889999998 57899999999999999875 23355678888999999999999999999998875 5777887777
Q ss_pred H-HHHhCCCHHHHHH----HHccCC------CCChhHHHHHHHHHHh---------CCChhHHHHHHHHHHHCCCCCChh
Q 046803 149 N-FYAKSNNVDVARK----VFDRMP------DKSVVAWNSMISGYEQ---------NGFAKEAIGLFNLMRDFGVNPDST 208 (580)
Q Consensus 149 ~-~y~~~g~~~~A~~----~f~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~ 208 (580)
. .....|+.++|++ +|++.. ..+...|...+....+ .|++++|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 5 3345677777665 666542 1356788888887665 788999999999998731111123
Q ss_pred HHHHHHHHH-------------HhCCChHHHHHHHHHHH------HcC---CCCc--------HHHhhHHhhHhhhc---
Q 046803 209 TCVCVLAAC-------------AQLGDIDLGRWVHEFIV------GQG---LDVN--------VVLATSLINMYARC--- 255 (580)
Q Consensus 209 t~~~ll~a~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~y~~~--- 255 (580)
.|....... ...+.++.|..++.... +.. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 333222211 12345666777666532 221 2433 24555555433221
Q ss_pred -CCH----HHHHHHHHhccC---CChHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCC-CHHHHH
Q 046803 256 -GNV----SKAREIFDMMSE---LNVIAWTAMISGYGM-------HGYGT-------EAVELFHRMRAHGVRP-NNVTFV 312 (580)
Q Consensus 256 -g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p-d~~t~~ 312 (580)
++. +.|..+|++... .+...|..++..+.+ .|+.+ +|..+|++..+. +.| +...+.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHH
Confidence 232 467778887764 467789888888876 79987 999999999863 345 467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHH-HH
Q 046803 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPG-V-EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGA-CK 388 (580)
Q Consensus 313 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~-~~ 388 (580)
.++..+.+.|++++|..+|+++.+ +.|+ . ..|..++..+.+.|++++|.++|++++...|+ ...|...... +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 888899999999999999999985 3454 3 58999999999999999999999999877664 3333333322 34
Q ss_pred hcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 389 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
..|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..++++....+
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 68999999999999999999999999999999999999999999999998764
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=8.9e-17 Score=154.66 Aligned_cols=248 Identities=9% Similarity=0.036 Sum_probs=205.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcC
Q 046803 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDS--TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256 (580)
Q Consensus 179 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 256 (580)
|.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3455678999999999987654 34544 3556678999999999999876543 24678888999999999999
Q ss_pred CHHHHHHHHHhccC----C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046803 257 NVSKAREIFDMMSE----L-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331 (580)
Q Consensus 257 ~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 331 (580)
+.++|.+.++++.. | +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998742 4 466777888999999999999999987 456778888999999999999999999
Q ss_pred HHhHHhcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 332 ASMRQEYGLLPGVE---HHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 332 ~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
+.+.+. .|+.. ....++..+...|++++|..+|++++...| ++..|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999864 35532 123344555566999999999988887677 58899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhH-HHHHHHHHHhCC
Q 046803 408 PENPGHYVMLSNIYALAGRMDR-VEVVRNIMIQKG 441 (580)
Q Consensus 408 p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~~~~ 441 (580)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 578998887643
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=3.8e-16 Score=161.63 Aligned_cols=364 Identities=8% Similarity=-0.086 Sum_probs=244.0
Q ss_pred hhhhchHHHHHhccCChhHHHHHHccCC------------CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHC-----C-
Q 046803 40 RSMLTKLLSLVCDAGFITYAQRIFFCIP------------SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-----N- 101 (580)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 101 (580)
...+|.|-..+...|++++|++.|++.. ....++|+.+...|...|++++|...|++.... +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4578888888889999999999887531 235678999999999999999999999887542 1
Q ss_pred CCC-ChhhHHHHHHHHHc--cCChHHHHHHHHHHHHhCCCCchHHHHHHHHH---HHhCCCHHHHHHHHccCCC---CCh
Q 046803 102 ISP-SNYTFSAVIKSCAH--LSILNLGRAVHCHVFVSGYDSDLHVQAALVNF---YAKSNNVDVARKVFDRMPD---KSV 172 (580)
Q Consensus 102 ~~p-~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---y~~~g~~~~A~~~f~~~~~---~~~ 172 (580)
..+ ...++.....++.. .+++++|...|+++++.. +.++..+..+..+ +...++.++|.+.|++..+ .+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 112 23455555444444 457899999999999886 3355556555554 3456777888888776532 355
Q ss_pred hHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHH
Q 046803 173 VAWNSMISGYEQ----NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248 (580)
Q Consensus 173 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 248 (580)
..+..+...+.. .|++++|.+.|++..... +.+...+..+...+...|++++|...+..+.+.. |.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 667666655544 467889999999988753 4456688899999999999999999999999875 5567777777
Q ss_pred hhHhhhc-------------------CCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 046803 249 INMYARC-------------------GNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306 (580)
Q Consensus 249 i~~y~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 306 (580)
..+|... +..+.|...|+...+ .+..+|..+...|...|++++|+..|++..+....|
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 7776432 235667777776653 456688999999999999999999999998854433
Q ss_pred CHH--HHHHHHH-HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHH
Q 046803 307 NNV--TFVAVLS-ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTA 382 (580)
Q Consensus 307 d~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 382 (580)
... .+..+.. ...+.|+.++|...|++..+ +.|+..... +....+.+++++.+...| ++.+|..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 321 2223332 34578999999999998874 456533222 223445566666666667 5788999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHH
Q 046803 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418 (580)
Q Consensus 383 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 418 (580)
|...+...|++++|++.|+++++++|.+|.+...++
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999999999999998887766554
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=8.5e-17 Score=157.47 Aligned_cols=273 Identities=11% Similarity=-0.019 Sum_probs=174.0
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHH
Q 046803 107 YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYE 183 (580)
Q Consensus 107 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 183 (580)
..+......+...|++++|..+++.+++.. +.+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345556666777777777777777777664 33556666677777777777777777766543 24556666777777
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHH-hh-HhhhcCCHHH
Q 046803 184 QNGFAKEAIGLFNLMRDFGVNPDST-TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL-IN-MYARCGNVSK 260 (580)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~y~~~g~~~~ 260 (580)
..|++++|++.|+++.+. .|+.. .+..+...+ ++......+ .. .+...|++++
T Consensus 101 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS--QPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT--STTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 777777777777776654 22222 222110000 000011111 22 3666677777
Q ss_pred HHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 261 AREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 261 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
|.+.|+++.+ .+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+++.+.
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777776653 356677777777777788888888887777642 224566777777788888888888888877653
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-------------HHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-------------PAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 338 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
.+.+...+..+...|.+.|++++|.+.+++.+...|+ ..+|..+..++...|++++|...+++.+
T Consensus 236 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 236 --NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred --CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1234667777888888888888888888776654444 5667788888888888888888877665
Q ss_pred hcC
Q 046803 405 SVE 407 (580)
Q Consensus 405 ~~~ 407 (580)
+..
T Consensus 314 ~~~ 316 (327)
T 3cv0_A 314 EPF 316 (327)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=3.7e-14 Score=155.23 Aligned_cols=382 Identities=11% Similarity=0.100 Sum_probs=238.3
Q ss_pred CHHHHHHHHhcCCCCchHHHHHHHHHHhCC--CCChhhhchHHHHHhccCChhHHHHHHccCCC-CC-----hhhHHHHH
Q 046803 7 HSPAYEAILKAGPRLKPLQQVHAHLIVAGY--GRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS-PD-----SFLFNTLI 78 (580)
Q Consensus 7 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~-~~-----~~~~~~li 78 (580)
|...|..+|.... +.=+++..+.+...+ ..|+.--...+++|...+.+.+|.++++++.- |+ ...-|.++
T Consensus 952 d~~lW~~vl~~~n--~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi 1029 (1630)
T 1xi4_A 952 DPELWGSVLLESN--PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLI 1029 (1630)
T ss_pred CHHHHHHHhcCCc--HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHH
Confidence 4455666665433 223344444444332 22333445556666677788888887776541 21 22333344
Q ss_pred H---------------------------HHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 046803 79 I---------------------------RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131 (580)
Q Consensus 79 ~---------------------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 131 (580)
. .+...|.+++|..+|++.. . .....+.++. ..+++++|.++..+
T Consensus 1030 ~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~----~-~~~A~~VLie---~i~nldrAiE~Aer 1101 (1630)
T 1xi4_A 1030 LTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD----V-NTSAVQVLIE---HIGNLDRAYEFAER 1101 (1630)
T ss_pred HHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC----C-HHHHHHHHHH---HHhhHHHHHHHHHh
Confidence 3 3445556666666665531 1 1111122221 34555555555543
Q ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHH
Q 046803 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211 (580)
Q Consensus 132 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 211 (580)
+ .++.+|..+..++.+.|++++|...|.+. .|...|..++..+.+.|++++|++.|...++.. +++...+
T Consensus 1102 v------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt 1171 (1630)
T 1xi4_A 1102 C------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVET 1171 (1630)
T ss_pred c------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccH
Confidence 3 23566666777777777777777777553 455666667777777777777777776655542 3333333
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHH
Q 046803 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291 (580)
Q Consensus 212 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 291 (580)
.++.+|++.++++....+ ++ .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++
T Consensus 1172 ~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A 1172 ELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred HHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHH
Confidence 466666666666643322 11 334445556777777777777777777764 467777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 292 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
|++.+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+
T Consensus 1240 AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1240 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777765 2456777777777777777777665432 23456677789999999999999999998888
Q ss_pred CCCCC-HHHHHHHHHHHHhc--CCchHHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCChhHHHH
Q 046803 372 GEKPA-PAVWTAMLGACKMH--KNFDLGVEVAEHLLSVEP-----ENPGHYVMLSNIYALAGRMDRVEV 432 (580)
Q Consensus 372 ~~~p~-~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~a~~ 432 (580)
+.+|. ...|.-|...+.+. ++..++.+.|..-..+.| .+...|..+...|.+.|+|+.|..
T Consensus 1308 ~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1308 GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 88774 56676666666654 466777777776666555 567889999999999999999984
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=5e-14 Score=154.18 Aligned_cols=373 Identities=13% Similarity=0.084 Sum_probs=257.1
Q ss_pred HhcCCCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHcc-----CCC-CChhhHHHHHHHHHcCCCcc
Q 046803 15 LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC-----IPS-PDSFLFNTLIIRNSKANFST 88 (580)
Q Consensus 15 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~-----~~~-~~~~~~~~li~~~~~~g~~~ 88 (580)
++-|..-..-+..-.+++++ .|+.+|+.++ ...+ +.-+.+.+. .++ .|+.--...+..|...|.+.
T Consensus 931 i~vt~~n~l~k~~arylv~r---~d~~lW~~vl----~~~n-~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~ 1002 (1630)
T 1xi4_A 931 INVCNENSLFKSLSRYLVRR---KDPELWGSVL----LESN-PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPN 1002 (1630)
T ss_pred HHHHhcchhHHHHHHHHHHh---cCHHHHHHHh----cCCc-HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHH
Confidence 33333333445555566664 5889999888 4332 222333332 121 23333355678889999999
Q ss_pred HHHHHHHHHHHCCC--CCChhhHHHHHHH---------------------------HHccCChHHHHHHHHHHHHhCCCC
Q 046803 89 DSLLFYRRMIVSNI--SPSNYTFSAVIKS---------------------------CAHLSILNLGRAVHCHVFVSGYDS 139 (580)
Q Consensus 89 ~A~~~~~~m~~~g~--~p~~~t~~~ll~a---------------------------~~~~~~~~~a~~~~~~~~~~g~~~ 139 (580)
+|++++++....+- .-+...-+.++.+ +...|.+++|..+|++.. .
T Consensus 1003 EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~ 1077 (1630)
T 1xi4_A 1003 ELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD-----V 1077 (1630)
T ss_pred HHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC-----C
Confidence 99999999984421 0122223333333 334445555555554431 1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 046803 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219 (580)
Q Consensus 140 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 219 (580)
.....+.+ +-..+++++|.++.++. .+..+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+
T Consensus 1078 ~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~ 1146 (1630)
T 1xi4_A 1078 NTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANT 1146 (1630)
T ss_pred HHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHH
Confidence 11111112 12455666666666655 24668888899999999999999988653 467788889999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046803 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299 (580)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 299 (580)
.|+++++.+.+....+.. ++..+.+.++.+|++.+++++..... ..++...|..+...|...|++++|..+|...
T Consensus 1147 lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1147 SGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred cCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 999999999998877764 44444456888899988888644442 4566777888888888999999999999874
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHH
Q 046803 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379 (580)
Q Consensus 300 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 379 (580)
..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|++..|..... . +..++..
T Consensus 1222 ---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl-~--Iiv~~de 1282 (1630)
T 1xi4_A 1222 ---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGL-H--IVVHADE 1282 (1630)
T ss_pred ---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHH-h--hhcCHHH
Confidence 37888888999999999998888765 345788888888888899998888773 2 3335566
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhc--CChhHHHHHHH
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVEVVRN 435 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~--g~~~~a~~~~~ 435 (580)
+..++..|...|.+++|+.+++..+.++|.+...|..|+.+|++- ++..++.++|.
T Consensus 1283 Leeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1283 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 778899999999999999999999999999999998888888764 45555555554
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.2e-15 Score=141.85 Aligned_cols=225 Identities=12% Similarity=0.043 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 252 (580)
..|..+...+...|++++|+..|++..+.. ++...+..+..++...|++++|...+..+.+.. |+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~---------- 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REM---------- 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--ccc----------
Confidence 345555555555666666666665555543 444455555555555555555555555444321 000
Q ss_pred hhcCCHHHHHHHHHhccCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046803 253 ARCGNVSKAREIFDMMSELN----VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 328 (580)
.++ ..+|..+...|...|++++|+..|++..+. .|+. ..+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHH
Confidence 001 356667777777777777888777777763 3443 3455667788888
Q ss_pred HHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 046803 329 RVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406 (580)
Q Consensus 329 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 406 (580)
..++.+.. ..| +...+..+...+...|++++|.+.+++.+...| +..+|..+...+...|++++|+..++++++.
T Consensus 126 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 126 KKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88888764 234 466778888888999999999999988887666 4788888999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 407 EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 407 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999888764
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.2e-15 Score=141.83 Aligned_cols=234 Identities=12% Similarity=0.031 Sum_probs=161.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC----hhHHHH
Q 046803 141 LHVQAALVNFYAKSNNVDVARKVFDRMPD--KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG--VNPD----STTCVC 212 (580)
Q Consensus 141 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ 212 (580)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 46788899999999999999999987533 677899999999999999999999999987642 1112 356666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHH
Q 046803 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292 (580)
Q Consensus 213 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 292 (580)
+..++...|++++|...+..+.+.. |+. . .+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~-------------------------------~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------D-------------------------------ILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------H-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------H-------------------------------HHHHHhHHHHH
Confidence 7777777777777777777776643 221 1 23334455555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 293 VELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 293 ~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
+..++++... .| +...+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++.+
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5555555542 22 2344555666666677777777777666543 12345667777777777777777777777776
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC------CCCcchHHHHH
Q 046803 372 GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE------PENPGHYVMLS 418 (580)
Q Consensus 372 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 418 (580)
...|+ ..+|..+...+...|++++|...+++++++. |.+...+..+.
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 66664 6677777778888888888888888877777 66555544443
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=5.7e-15 Score=140.61 Aligned_cols=242 Identities=10% Similarity=-0.100 Sum_probs=193.5
Q ss_pred hCCChhHHHHHHHHHHHCCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHH
Q 046803 184 QNGFAKEAIGLFNLMRDFGVN--P-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260 (580)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 260 (580)
..|++++|+..|+++.+.... | +..++..+..++...|++++|...+..+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788899999888875321 1 34577888888889999999999999988875 5578888999999999999999
Q ss_pred HHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 261 AREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 261 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988764 45788999999999999999999999999884 566655555666667889999999999888764
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 338 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
.+++...+ .++..+...++.++|.+.+++.+...|+ ..+|..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 3777888899999999999888876663 577899999999999999999999999999987754
Q ss_pred hHHHHHHHHHhcCChhHHHHHH
Q 046803 413 HYVMLSNIYALAGRMDRVEVVR 434 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~ 434 (580)
. ...++...|++++|.+.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 4 466788889998887765
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=9.9e-17 Score=170.14 Aligned_cols=125 Identities=16% Similarity=0.202 Sum_probs=93.7
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc-------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMS-------ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 311 (580)
..-..+||+||++|+++|++++|.++|..|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445678888888888888888888886653 378888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 046803 312 VAVLSACAHAGL-VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 312 ~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 364 (580)
+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....+.+-++...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHH
Confidence 888888888776 46777888888765 88888888887777666654444433
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=3.2e-15 Score=137.22 Aligned_cols=195 Identities=13% Similarity=0.087 Sum_probs=148.5
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAV 314 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l 314 (580)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666777777778888888888888877654 35667777888888888888888888888774 343 4567777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHH
Q 046803 315 LSACAHA-----------GLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382 (580)
Q Consensus 315 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 382 (580)
..++... |++++|...|++..+. .| +...+..+..+|...|++++|++.|++++....++..|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 7778888 9999999999998753 45 4778888999999999999999999888754467889999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 383 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
+..++...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887653
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=7e-17 Score=171.27 Aligned_cols=161 Identities=14% Similarity=0.181 Sum_probs=129.7
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHccCC-------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH
Q 046803 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMP-------DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210 (580)
Q Consensus 138 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 210 (580)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445789999999999999999999997753 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCh-HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-----CChHHHHHHHHHHH
Q 046803 211 VCVLAACAQLGDI-DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-----LNVIAWTAMISGYG 284 (580)
Q Consensus 211 ~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~ 284 (580)
+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.- +.+.+...|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 78999999999999999999999999888776555555555433331 11333444555565
Q ss_pred hcCC---------hHHHHHHHHH
Q 046803 285 MHGY---------GTEAVELFHR 298 (580)
Q Consensus 285 ~~g~---------~~~A~~~~~~ 298 (580)
+.+. .++-.++|++
T Consensus 284 ~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 284 KDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp CCSCCCCCCCSSCHHHHHHHHHH
T ss_pred cCCCCcCccccCCHHHHHHHHHH
Confidence 5441 3455555654
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=2.3e-14 Score=136.31 Aligned_cols=245 Identities=11% Similarity=-0.049 Sum_probs=138.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc--HHHhhHHhhHh
Q 046803 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN--VVLATSLINMY 252 (580)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y 252 (580)
+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+.+.+..++ ...+..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455555555666666655555432 12233555555555555666666665555555221111 22355555666
Q ss_pred hhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 046803 253 ARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGH 328 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~ 328 (580)
.+.|++++|.+.|++..+ .+..+|..+...|...|++++|+..|++..+. .|+ ...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655542 33456666666666666666666666666553 333 334444442333445677777
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhHcCC---CCC------HHHHHHHHHHHHhcCCchHH
Q 046803 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGL---LNEAYKFVKDVIGE---KPA------PAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 329 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~---~p~------~~~~~~ll~~~~~~g~~~~a 396 (580)
..|+.+.+.. +.+...+..+...+...|+ +++|...+++++.. .|+ ..+|..+...|...|++++|
T Consensus 163 ~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7776665421 1235555556666666666 66666666555422 133 24677788888888999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046803 397 VEVAEHLLSVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 397 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 424 (580)
...++++++++|+++.+...+..+....
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 9999999999998887777666655443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=2e-13 Score=128.19 Aligned_cols=169 Identities=10% Similarity=-0.031 Sum_probs=99.9
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACA 319 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~ 319 (580)
++..+..+|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++...+..|+ ...+..+...+.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 333344444444444444444443321 2344555555555666666666666666555223343 345555666666
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHH
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 398 (580)
..|++++|...|+++.+.. +.+...+..+...|.+.|++++|.+.+++.+...| +...+..+...+...|++++|..
T Consensus 153 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 6777777777776665431 22356666677777777777777777766666555 35666677777777777777777
Q ss_pred HHHHHHhcCCCCcchH
Q 046803 399 VAEHLLSVEPENPGHY 414 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~ 414 (580)
.++++++..|+++...
T Consensus 231 ~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 231 YGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHCCCCHHHH
Confidence 7777777777765443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=8.5e-13 Score=125.65 Aligned_cols=226 Identities=9% Similarity=-0.029 Sum_probs=165.9
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCcHHHhh
Q 046803 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ----LGDIDLGRWVHEFIVGQGLDVNVVLAT 246 (580)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 246 (580)
+..++..+...|...|++++|+..|++..+. .+...+..+...+.. .+++++|...+.+..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556677777777777888888888777763 244566667777777 777888888877777765 566677
Q ss_pred HHhhHhhh----cCCHHHHHHHHHhccC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046803 247 SLINMYAR----CGNVSKAREIFDMMSE-LNVIAWTAMISGYGM----HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317 (580)
Q Consensus 247 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 317 (580)
.+..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 77777777 7788888877776654 356677777777777 788888888888887754 45566666677
Q ss_pred HHh----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh
Q 046803 318 CAH----AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR----AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389 (580)
Q Consensus 318 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~ 389 (580)
+.. .+++++|...|++..+. .+...+..+..+|.. .+++++|.+.+++.+...| ...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHc
Confidence 776 78888888888887653 245666677788888 8888888888877765554 6667777777777
Q ss_pred ----cCCchHHHHHHHHHHhcCCCC
Q 046803 390 ----HKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 390 ----~g~~~~a~~~~~~~~~~~p~~ 410 (580)
.+++++|...++++.+.+|++
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHH
Confidence 788888888888888887753
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=2.9e-14 Score=132.94 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=103.7
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 318 (580)
...+..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33334444444444444444444443331 234455555555666666666666666655532 22344555566666
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.+++.+...| +..+|..+...+...|++++|.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 6666666666666666542 122455666677777777777777777766665555 3666777777777777777777
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHH
Q 046803 398 EVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 398 ~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
..++++++..|+++..+..+..+.
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHccCcchHHHHHHHHHHH
Confidence 777777777777766665554443
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=1.7e-13 Score=130.25 Aligned_cols=241 Identities=12% Similarity=0.035 Sum_probs=185.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHH
Q 046803 144 QAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS--TTCVCVLAACA 218 (580)
Q Consensus 144 ~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 218 (580)
.......|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.+-.|+. ..+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34456667788888888888877643 34558888888999999999999999998874322222 24788888899
Q ss_pred hCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHH
Q 046803 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVEL 295 (580)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 295 (580)
..|++++|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|++..+ .+...|..+...+...+++++|+..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998875 55778899999999999999999999998875 4566787777344445699999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHhHHhcCCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 046803 296 FHRMRAHGVRPN-NVTFVAVLSACAHAGL---VQEGHRVFASMRQEYGLLPG------VEHHVCMVDLFGRAGLLNEAYK 365 (580)
Q Consensus 296 ~~~m~~~g~~pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~ 365 (580)
|++..+. .|+ ...+..+..++...|+ .++|...++++.+...-.|+ ...|..+...|.+.|++++|.+
T Consensus 165 ~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999984 444 5677777888888888 88888888888765433344 2578889999999999999999
Q ss_pred HHHhHcCCCCC-HHHHHHHHHHH
Q 046803 366 FVKDVIGEKPA-PAVWTAMLGAC 387 (580)
Q Consensus 366 ~~~~~~~~~p~-~~~~~~ll~~~ 387 (580)
.+++++...|+ ...+..+....
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHhcCccHHHHHHHhhhhh
Confidence 99999888885 55555554443
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=7.3e-14 Score=143.20 Aligned_cols=377 Identities=10% Similarity=0.005 Sum_probs=226.9
Q ss_pred CChhhhchHHHHHhccCChhHHHHHHccCCC-CChhhHHHHHHHHHcCCCc---cHHHHHHHHHHHCCCCCChhhHHHHH
Q 046803 38 RSRSMLTKLLSLVCDAGFITYAQRIFFCIPS-PDSFLFNTLIIRNSKANFS---TDSLLFYRRMIVSNISPSNYTFSAVI 113 (580)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~ll 113 (580)
|+..+....+ +.+++++|.+.|+...+ .++.++..|...|...|++ ++|+.+|++..+. +...+..+.
T Consensus 5 p~~~la~~~~----~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg 76 (452)
T 3e4b_A 5 PDQRLANEAL----KRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLG 76 (452)
T ss_dssp -CHHHHHHHH----HHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHH
T ss_pred chHHHHHHHH----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHH
Confidence 3444444445 77788888888876543 3555666666667777777 7888888877643 334444444
Q ss_pred HHHHccC-----ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH---HHHHccCCC-CChhHHHHHHHHHHh
Q 046803 114 KSCAHLS-----ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA---RKVFDRMPD-KSVVAWNSMISGYEQ 184 (580)
Q Consensus 114 ~a~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A---~~~f~~~~~-~~~~~~~~li~~~~~ 184 (580)
..+...+ +.++|...+.+..+.|.. ..+..|..+|...+..+.+ .+.+....+ .+...+..|...|..
T Consensus 77 ~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 77 RLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRT 153 (452)
T ss_dssp HHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 4333333 667888888888876632 2555666777766554333 333332221 356677778888888
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhc----CC
Q 046803 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG---DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC----GN 257 (580)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~----g~ 257 (580)
.+.++++........+.-...++..+..+...+...| +.++|...+....+.| +++...+..|..+|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 7765555544333322212233447777777887888 8888888888888887 56666556677777655 78
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHH
Q 046803 258 VSKAREIFDMMSELNVIAWTAMISG-Y--GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG-----LVQEGHR 329 (580)
Q Consensus 258 ~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g-----~~~~a~~ 329 (580)
+++|.+.|++....+...+..+... | ...++.++|+..|++..+.| +......|...|. .| ++++|..
T Consensus 233 ~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 233 EKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8899998888774456677777776 4 45788899999999888766 5566666666666 45 8899998
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHH
Q 046803 330 VFASMRQEYGLLPGVEHHVCMVDLFGR----AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM----HKNFDLGVEVAE 401 (580)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~ 401 (580)
.|++.. ..+...+..|..+|.. ..++++|...|+++.... ++.....|...|.. ..+.++|...|+
T Consensus 309 ~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 309 HFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-QNSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-CTTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-hHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 888764 3456667777777765 348899999997776432 34455566666653 458889999999
Q ss_pred HHHhcCCCCcchHHHHHHHH--HhcCChhHHHHHHHHHH
Q 046803 402 HLLSVEPENPGHYVMLSNIY--ALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 402 ~~~~~~p~~~~~~~~l~~~y--~~~g~~~~a~~~~~~m~ 438 (580)
++.+.++.. ....+..+. ...++..+|.++.++-+
T Consensus 383 ~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 383 LAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 988877543 333333332 23345556666655543
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=1.6e-13 Score=128.80 Aligned_cols=198 Identities=11% Similarity=-0.030 Sum_probs=174.2
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 318 (580)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56677888888889999999999887763 467789999999999999999999999998853 23567888889999
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a 396 (580)
...|++++|.++++++.+ .+..| +...+..+...|.+.|++++|.+.+++.+...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999875 23455 477888899999999999999999988887777 488899999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 397 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
...++++++..|.++..+..++.+|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998753
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=9.9e-14 Score=127.23 Aligned_cols=206 Identities=12% Similarity=0.024 Sum_probs=108.6
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhh
Q 046803 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250 (580)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 250 (580)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++..++.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455666666666666666666666665532 2234455555666666666666666666666554 334455555555
Q ss_pred HhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 046803 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHR 329 (580)
Q Consensus 251 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~ 329 (580)
+|.+.+. . ..+ .+...|++++|+..|++..+. .|+ ...+..+..++...|++++|..
T Consensus 82 ~~~~~~~---------~--~~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 82 AYVALYR---------Q--AED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHH---------T--CSS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhhh---------h--hhh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHH
Confidence 5544400 0 000 000116666666666666653 333 3455556666666666666666
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
.|+++.+. . .+...+..+..+|...|++++|+..|++.+...| +...+..+...+...|++++|+..+++.
T Consensus 140 ~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 140 SLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666643 2 4555666666666666777777766666665556 3566666666666667777766666654
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=1.9e-13 Score=125.51 Aligned_cols=197 Identities=12% Similarity=0.027 Sum_probs=124.0
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 317 (580)
+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|...|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344555555566666666666666655442 234556666666666666666666666666532 2244556666666
Q ss_pred HHhc-CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCch
Q 046803 318 CAHA-GLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFD 394 (580)
Q Consensus 318 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~ 394 (580)
+... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|.+.+++.+...|+ ...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 6666 777777777766654 223332 455666666777777777777777666655553 666666777777777777
Q ss_pred HHHHHHHHHHhcCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 395 LGVEVAEHLLSVEP-ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 395 ~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+|...++++++..| .++..+..++..+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777777777 6666666666677777777777777766654
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=9.4e-14 Score=138.18 Aligned_cols=225 Identities=10% Similarity=0.031 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCC-HHHHHHHHHhccC---CChHHHHHHHHHHH
Q 046803 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN-VSKAREIFDMMSE---LNVIAWTAMISGYG 284 (580)
Q Consensus 209 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~~ 284 (580)
.|..+..++...|++++|...+.++++.. +.+..+|+.+..+|.+.|+ +++|...|+++.+ .+...|+.+...+.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 44445555555666666666666666554 4456666666666666775 7777777776653 35667777777888
Q ss_pred hcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHH-cCCHH
Q 046803 285 MHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGR-AGLLN 361 (580)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~~ 361 (580)
..|++++|+..|+++++. .| +...|..+..++...|++++|...|+++.+. .| +...|+.+..+|.+ .|..+
T Consensus 178 ~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 888888888888888874 33 4567777888888888888888888888753 34 57778888888888 56657
Q ss_pred HH-----HHHHHhHcCCCCC-HHHHHHHHHHHHhcC--CchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC--------
Q 046803 362 EA-----YKFVKDVIGEKPA-PAVWTAMLGACKMHK--NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG-------- 425 (580)
Q Consensus 362 ~A-----~~~~~~~~~~~p~-~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-------- 425 (580)
+| ++.|++++...|+ ...|..+...+...| ++++|+..++++ +.+|+++..+..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 5888888888884 788999999999888 699999999998 889999999999999999875
Q ss_pred -ChhHHHHHHHHH-HhC
Q 046803 426 -RMDRVEVVRNIM-IQK 440 (580)
Q Consensus 426 -~~~~a~~~~~~m-~~~ 440 (580)
..++|.++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 358999999998 553
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=1.8e-13 Score=136.13 Aligned_cols=246 Identities=10% Similarity=0.055 Sum_probs=202.6
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCcHHHhhHHhh
Q 046803 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD-IDLGRWVHEFIVGQGLDVNVVLATSLIN 250 (580)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 250 (580)
...|+.+...+.+.|++++|++.|++.++.. +-+...|..+..++...|+ +++|...+.++++.. +.+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4578888889999999999999999998752 2345678888888999996 999999999999886 667889999999
Q ss_pred HhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 046803 251 MYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH-AGLVQE 326 (580)
Q Consensus 251 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~-~g~~~~ 326 (580)
+|.+.|++++|...|+++.+ .+..+|..+..++.+.|++++|+..|+++++.... +...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999998874 56789999999999999999999999999985322 56788888888888 566577
Q ss_pred H-----HHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC------
Q 046803 327 G-----HRVFASMRQEYGLLP-GVEHHVCMVDLFGRAG--LLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHK------ 391 (580)
Q Consensus 327 a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g------ 391 (580)
| ...|++..+ +.| +...|..+..+|...| ++++|++.+++. ...|+ ...+..++..|...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 7 477888775 345 4778888899999888 689999999666 77775 778889999998874
Q ss_pred --C-chHHHHHHHHH-HhcCCCCcchHHHHHHHHHhc
Q 046803 392 --N-FDLGVEVAEHL-LSVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 392 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~~ 424 (580)
+ .++|+.+++++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999888888887766543
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=4.4e-13 Score=123.07 Aligned_cols=206 Identities=12% Similarity=-0.059 Sum_probs=137.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHh
Q 046803 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGM 285 (580)
Q Consensus 209 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 285 (580)
.+..+...+...|++++|.+.+..+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+..+|..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33344444444444444444444444432 23344455555555555555555555555432 345566677777777
Q ss_pred c-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046803 286 H-GYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 286 ~-g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 363 (580)
. |++++|+..++++.+.+..|+ ...+..+..++...|++++|...++.+.+. .+.+...+..+...+.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 7 777888888877776333344 356677777888888888888888887753 223467788888888899999999
Q ss_pred HHHHHhHcCCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 364 YKFVKDVIGEKP--APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 364 ~~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
.+.+++.+...| +...+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999977776555 466777777788889999999999999988888877665444
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=8.1e-14 Score=129.88 Aligned_cols=199 Identities=8% Similarity=0.063 Sum_probs=158.7
Q ss_pred CcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 240 VNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 240 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677788889999999999999998864 467789999999999999999999999998853 235678888899
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~ 395 (580)
.+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|.+.+++.+...| +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999864 234677888999999999999999999988887777 58889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
|+..++++++..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999997743
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.58 E-value=1.1e-13 Score=139.70 Aligned_cols=267 Identities=13% Similarity=0.063 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCC-CcH
Q 046803 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD----STTCVCVLAACAQLGDIDLGRWVHEFIVGQ----GLD-VNV 242 (580)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 242 (580)
...+......+...|++++|+..|++..+.+ +.+ ...+..+...+...|++++|...+.++.+. +.+ ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445555666666677777777776666542 112 234555666666667777776666665432 111 124
Q ss_pred HHhhHHhhHhhhcCCHHHHHHHHHhccC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHH
Q 046803 243 VLATSLINMYARCGNVSKAREIFDMMSE-----LN----VIAWTAMISGYGMHGY--------------------GTEAV 293 (580)
Q Consensus 243 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 293 (580)
.++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 4566677777777777777777766543 22 3367777777777787 78888
Q ss_pred HHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 046803 294 ELFHRMRAH----GVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 294 ~~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 364 (580)
..+++.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 777765531 11122 235667777888888888888888887643222222 346777888888999999999
Q ss_pred HHHHhHcCCCC---C----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHH
Q 046803 365 KFVKDVIGEKP---A----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN------PGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 365 ~~~~~~~~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~ 431 (580)
+.+++.+...| + ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88877663221 2 4567788888899999999999999888765332 457778899999999999999
Q ss_pred HHHHHHHh
Q 046803 432 VVRNIMIQ 439 (580)
Q Consensus 432 ~~~~~m~~ 439 (580)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888765
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=5.3e-14 Score=142.57 Aligned_cols=261 Identities=13% Similarity=0.026 Sum_probs=160.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCC-h----hHHHHHHHHHHhCCChHHHHHHHHHHHHc----C-CCCcHHHhhH
Q 046803 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPD-S----TTCVCVLAACAQLGDIDLGRWVHEFIVGQ----G-LDVNVVLATS 247 (580)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 247 (580)
+...+...|++++|+..|++..+. .|+ . ..+..+...+...|++++|...+.+..+. + .+....++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 344445555555555555555443 122 1 23444445555555555555555544432 1 1122344555
Q ss_pred HhhHhhhcCCHHHHHHHHHhccC---------CChHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHh
Q 046803 248 LINMYARCGNVSKAREIFDMMSE---------LNVIAWTAMISGYGMHGY-----------------GTEAVELFHRMRA 301 (580)
Q Consensus 248 li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 301 (580)
+...|...|++++|.+.|++..+ ....+|..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 56666666666666666655432 113356666666666777 6777776666543
Q ss_pred C----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhHcC
Q 046803 302 H----GVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372 (580)
Q Consensus 302 ~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 372 (580)
. +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 11111 235666777777888888888888777643211112 23667788888888888888888876663
Q ss_pred CCC---C----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 373 EKP---A----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN------PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 373 ~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
..| + ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 222 1 4567788888888899999999888888764332 34778889999999999999999888765
Q ss_pred C
Q 046803 440 K 440 (580)
Q Consensus 440 ~ 440 (580)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.57 E-value=9e-14 Score=136.05 Aligned_cols=265 Identities=13% Similarity=0.053 Sum_probs=185.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CC-CCcHH
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD-----STTCVCVLAACAQLGDIDLGRWVHEFIVGQ----GL-DVNVV 243 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 243 (580)
.+......+...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...+....+. +. +....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34445556667777777777777776642 32 245566666677777777777777665532 11 12245
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHH
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSE-----LN----VIAWTAMISGYGMHGY--------------------GTEAVE 294 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 294 (580)
++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 667777777888888888877776543 22 3367777778888888 888888
Q ss_pred HHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 046803 295 LFHRMRAH----GVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFGRAGLLNEAYK 365 (580)
Q Consensus 295 ~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 365 (580)
.+++.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776531 11121 236677777888899999999998887643211122 3477788889999999999999
Q ss_pred HHHhHcCCC---CC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHH
Q 046803 366 FVKDVIGEK---PA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN------PGHYVMLSNIYALAGRMDRVEV 432 (580)
Q Consensus 366 ~~~~~~~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~ 432 (580)
.+++.+... ++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 997776322 12 5567888899999999999999999988765432 3477889999999999999999
Q ss_pred HHHHHHhC
Q 046803 433 VRNIMIQK 440 (580)
Q Consensus 433 ~~~~m~~~ 440 (580)
.+++..+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998764
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=2.6e-12 Score=122.23 Aligned_cols=224 Identities=11% Similarity=-0.015 Sum_probs=197.0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh----cCCHHHHHHHHHhccC-CChHHHHHHH
Q 046803 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR----CGNVSKAREIFDMMSE-LNVIAWTAMI 280 (580)
Q Consensus 206 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 280 (580)
+..++..+...+...|++++|...+....+. .+...+..+..+|.. .|++++|.+.|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5567788888999999999999999999984 356778889999999 9999999999998765 4678899999
Q ss_pred HHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 281 SGYGM----HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH----AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 281 ~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999865 67788888889999 99999999999999863 3 5667778889
Q ss_pred HHHH----cCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHh-
Q 046803 353 LFGR----AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM----HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL- 423 (580)
Q Consensus 353 ~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~- 423 (580)
.|.. .+++++|.+.|++.+... ++..+..+...+.. .+++++|+..++++.+.+| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 9988 999999999998877553 57788889999999 9999999999999999876 6789999999999
Q ss_pred ---cCChhHHHHHHHHHHhCCC
Q 046803 424 ---AGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 424 ---~g~~~~a~~~~~~m~~~~~ 442 (580)
.+++++|.+.+++..+.|.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999987653
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=1.1e-13 Score=131.62 Aligned_cols=219 Identities=9% Similarity=-0.093 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 252 (580)
.+|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|...+..+++.. +.+..++..+..+|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Confidence 345555555555555555555555555432 2234555555555666666666666666655543 33455666666666
Q ss_pred hhcCCHHHHHHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046803 253 ARCGNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
.+.|++++|.+.|+++.+ |+...+...+..+...|++++|+..+++..... +++...+ .++..+...++.++|...
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMER 199 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHH
Confidence 666666666666666543 333333333334455677788888887766542 2333333 355666677777778777
Q ss_pred HHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 046803 331 FASMRQEYGLLPG-----VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400 (580)
Q Consensus 331 ~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 400 (580)
+....+ ..|+ ...+..+...|.+.|++++|.+.|++++...|+. +.....++...|++++|+..+
T Consensus 200 ~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 776642 2232 4677778888888888888888888888777742 222344566677777777665
No 59
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=3.2e-13 Score=138.43 Aligned_cols=343 Identities=10% Similarity=-0.001 Sum_probs=217.0
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCh---HHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 046803 77 LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL---NLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153 (580)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 153 (580)
+...+.+.|++++|+++|++..+.|. ...+..+-..+...|+. ++|...|.++.+. ++..+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 55667778889999999988877663 23333444444556666 7888888888754 44555566664555
Q ss_pred CC-----CHHHHHHHHccCCCC-ChhHHHHHHHHHHhCCChhH---HHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChH
Q 046803 154 SN-----NVDVARKVFDRMPDK-SVVAWNSMISGYEQNGFAKE---AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224 (580)
Q Consensus 154 ~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 224 (580)
.+ ++++|...|++..++ +..++..|...|...+..++ +.+.+......| +......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 54 778888888776553 45577888888877765443 444555544444 3456666677777777555
Q ss_pred HHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcC---CHHHHHHHHHhccC---CChHHHHHHHHHHHhc----CChHHHHH
Q 046803 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCG---NVSKAREIFDMMSE---LNVIAWTAMISGYGMH----GYGTEAVE 294 (580)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~ 294 (580)
++......+.+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 55444333333222333447788888888888 88888888887654 3444446677776544 68889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHH
Q 046803 295 LFHRMRAHGVRPNNVTFVAVLSA-C--AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG-----LLNEAYKF 366 (580)
Q Consensus 295 ~~~~m~~~g~~pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~ 366 (580)
+|++.. .| +...+..+... + ...++.++|..+|++..+. | +...+..|..+|. .| ++++|.+.
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 998876 32 44555555555 3 4578899999999888642 3 5666677777776 55 88999999
Q ss_pred HHhHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHH
Q 046803 367 VKDVIGEKPAPAVWTAMLGACKM----HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL----AGRMDRVEVVRNIMI 438 (580)
Q Consensus 367 ~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~ 438 (580)
|+++. ..++..+..|...|.. ..++++|...|+++.+.+ ++.....|+.+|.. ..+.++|...++...
T Consensus 310 ~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 310 FEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 97776 4467777778777766 348888999998887744 46788888888875 458888888888888
Q ss_pred hCCC
Q 046803 439 QKGL 442 (580)
Q Consensus 439 ~~~~ 442 (580)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 7764
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=7e-13 Score=117.98 Aligned_cols=166 Identities=12% Similarity=0.057 Sum_probs=133.1
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 046803 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350 (580)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 350 (580)
+...|..+...|.+.|++++|+..|++..+. .| +..++..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567777888888888888888888888774 34 4467777778888888888888888887653 22346667777
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 429 (580)
...+...+++++|.+.+.+.+...| +...+..+...+...|++++|+..++++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 7888888888888888877777777 477888888888889999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHhCC
Q 046803 430 VEVVRNIMIQKG 441 (580)
Q Consensus 430 a~~~~~~m~~~~ 441 (580)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999988887643
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=139.78 Aligned_cols=294 Identities=12% Similarity=0.004 Sum_probs=184.0
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhCCCHHHHHHHHccCCC-----C----C
Q 046803 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD---LHVQAALVNFYAKSNNVDVARKVFDRMPD-----K----S 171 (580)
Q Consensus 104 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~----~ 171 (580)
+....+......+...|++++|...++.+++...... ..++..+...|...|++++|...|++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444455556667777888888888888877643211 24566666777777777777776665421 1 1
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhh
Q 046803 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV-NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250 (580)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 250 (580)
..+|..+...|...|++++|+..|++..+... .++. .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHH
Confidence 33555566666666666666666665543200 0010 001223444444
Q ss_pred HhhhcCC--------------------HHHHHHHHHhccC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 251 MYARCGN--------------------VSKAREIFDMMSE-----L----NVIAWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 251 ~y~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
.|...|+ +++|.+.|.+..+ . ...+|..+...|...|++++|+..+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444454 5555555444321 1 123566677777777888888877777664
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhHcC
Q 046803 302 HGV-RPN----NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372 (580)
Q Consensus 302 ~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 372 (580)
... .++ ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 112 236677777888888888888888877643211111 55677888889999999999999977763
Q ss_pred C---CCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCChh
Q 046803 373 E---KPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE------PENPGHYVMLSNIYALAGRMD 428 (580)
Q Consensus 373 ~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~ 428 (580)
. .++ ..++..+...+...|++++|...+++++++. +....++..++.+|...|+..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 2 122 5568888899999999999999999988753 223456778888888888764
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=1.3e-13 Score=142.27 Aligned_cols=208 Identities=12% Similarity=0.049 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCH-HHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046803 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV-SKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRM 299 (580)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 299 (580)
+++.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444454444332 34566667777777777777 777777776653 34667888888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 046803 300 RAHGVRPNNVTFVAVLSACAHA---------GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA--------GLLNE 362 (580)
Q Consensus 300 ~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 362 (580)
.+. .|+...+..+..++... |++++|...|+++.+. .+.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 874 57777788888888888 9999999999998753 223577888899999888 99999
Q ss_pred HHHHHHhHcCCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 363 AYKFVKDVIGEKP----APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 363 A~~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
|++.|++++...| +...|..+..+|...|++++|+..|+++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998888777 5888999999999999999999999999999999999999999999999999999876543
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=2.8e-13 Score=137.21 Aligned_cols=235 Identities=11% Similarity=0.025 Sum_probs=147.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc----C-CCCcHHH
Q 046803 175 WNSMISGYEQNGFAKEAIGLFNLMRDF----GVNP-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ----G-LDVNVVL 244 (580)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 244 (580)
|..+...|...|++++|+..|++..+. +-.| ....+..+...+...|++++|...+.++.+. + .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444444444444444444443321 1011 1224444445555555555555555544432 1 1122345
Q ss_pred hhHHhhHhhhcCC-----------------HHHHHHHHHhccC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHH
Q 046803 245 ATSLINMYARCGN-----------------VSKAREIFDMMSE-----L----NVIAWTAMISGYGMHGYGTEAVELFHR 298 (580)
Q Consensus 245 ~~~li~~y~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 298 (580)
+..+...|...|+ +++|.+.|++..+ . ...+|..+...|...|++++|+..|++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5566666666666 6666666655432 1 234677778888888888888888887
Q ss_pred HHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 046803 299 MRAHGV-RPN----NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP----GVEHHVCMVDLFGRAGLLNEAYKFVKD 369 (580)
Q Consensus 299 m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~ 369 (580)
..+... .++ ..++..+...+...|++++|...+++......-.. ....+..+...|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 765211 112 23677778888899999999998888765321111 156777888999999999999999987
Q ss_pred HcCCCC---C----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 370 VIGEKP---A----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 370 ~~~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
.+...+ + ..++..+...+...|++++|...+++++++.+.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 763321 1 456888899999999999999999999987653
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=1.8e-12 Score=115.26 Aligned_cols=169 Identities=12% Similarity=0.032 Sum_probs=140.8
Q ss_pred CcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 240 VNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 240 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
.+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3567788888888888899999888888764 456788888899999999999999999888743 224556667777
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~ 395 (580)
.+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.|++.+...| ++.+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999988753 233577888899999999999999999988888888 48889999999999999999
Q ss_pred HHHHHHHHHhcCCCCc
Q 046803 396 GVEVAEHLLSVEPENP 411 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~ 411 (580)
|+..|+++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999998753
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=3.7e-11 Score=116.49 Aligned_cols=220 Identities=11% Similarity=0.059 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHH-------hCCCh-------HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh
Q 046803 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACA-------QLGDI-------DLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254 (580)
Q Consensus 189 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 254 (580)
++|+.+|++..... +-+...|...+..+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777642 334456666665554 34665 7888888888873124466678888888888
Q ss_pred cCCHHHHHHHHHhccC--C-ChH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 046803 255 CGNVSKAREIFDMMSE--L-NVI-AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA-HAGLVQEGHR 329 (580)
Q Consensus 255 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~-~~g~~~~a~~ 329 (580)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+... ++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887764 3 233 788888888888888888888888887432 23344443333322 3688888888
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC---CC--CHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE---KP--APAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
+|+...+.. +.+...|..++..+.+.|++++|..+|++++.. .| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887643 235777888888888888888888888877753 44 36678888888888888888888888888
Q ss_pred hcCCCCcc
Q 046803 405 SVEPENPG 412 (580)
Q Consensus 405 ~~~p~~~~ 412 (580)
+..|+++.
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88887553
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=1.8e-12 Score=126.77 Aligned_cols=135 Identities=11% Similarity=0.026 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGV-RPN----NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VE 345 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 345 (580)
++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 344445555555555555555555443100 011 124555555666666666666666655432111111 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCC---C----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKP---A----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
.+..+...|...|++++|.+.+++++...| + ..++..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 566677777777777777777766552211 1 345667777788888888888888887776543
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=5e-13 Score=129.41 Aligned_cols=237 Identities=11% Similarity=0.093 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc------C-
Q 046803 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDF-------GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ------G- 237 (580)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~- 237 (580)
..+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777888888888888888888887652 11223345666666677777777777777666543 1
Q ss_pred CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCC-HHH
Q 046803 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH------GVRPN-NVT 310 (580)
Q Consensus 238 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t 310 (580)
.+....++..+...|...|++++|.+.|++ ..+. +-.|+ ...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------------------------a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKR-------------------------------ALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-------------------------------HHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHH-------------------------------HHHHHHHhcCCCChHHHHH
Confidence 112234445555555555555555555544 3321 11111 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC---------CC
Q 046803 311 FVAVLSACAHAGLVQEGHRVFASMRQEY-----GLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE---------KP 375 (580)
Q Consensus 311 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~p 375 (580)
+..+...+...|++++|..+++.+.+.. +..| ....+..+...|.+.|++++|.+.+++++.. .+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4445555555556666555555554321 1112 2344555666666666666666666554421 11
Q ss_pred C-------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 376 A-------PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 376 ~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
. ...+..+...+...+.+.++...+++.....|.++.++..++.+|.+.|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 122333344455566777777788888777777788888888888888888888888887764
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.44 E-value=4.4e-10 Score=119.28 Aligned_cols=401 Identities=9% Similarity=-0.009 Sum_probs=180.4
Q ss_pred CChhhhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCC---ccHHHHHHHHHHHCC-CCCChhhHH
Q 046803 38 RSRSMLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANF---STDSLLFYRRMIVSN-ISPSNYTFS 110 (580)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~~t~~ 110 (580)
.|...|..++..+-+.+.++.|+.+|+++.. .....|..-+..-.+.|. ++.+.++|++.+... ..|+...|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 3566666666666566666667766665542 344456666666666666 667777777666542 125555555
Q ss_pred HHHHHHHccCCh--------HHHHHHHHHHHHh-CC-CCc-hHHHHHHHHHHHh---------CCCHHHHHHHHccCCC-
Q 046803 111 AVIKSCAHLSIL--------NLGRAVHCHVFVS-GY-DSD-LHVQAALVNFYAK---------SNNVDVARKVFDRMPD- 169 (580)
Q Consensus 111 ~ll~a~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~li~~y~~---------~g~~~~A~~~f~~~~~- 169 (580)
.-+.-....++. +..+++|+.++.. |. .++ ..+|...+..... .++++.++++|++...
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 544433333332 2334566555442 44 332 3466666654432 2345666666666543
Q ss_pred C--Ch-hHHH---HHHHHH----------HhCCChhHHHHHHHHHHH--CCCC---------------C-----C---hh
Q 046803 170 K--SV-VAWN---SMISGY----------EQNGFAKEAIGLFNLMRD--FGVN---------------P-----D---ST 208 (580)
Q Consensus 170 ~--~~-~~~~---~li~~~----------~~~g~~~~A~~~~~~m~~--~g~~---------------p-----~---~~ 208 (580)
| +. ..|. .+.... -...+++.|...+.++.. .++. | + ..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence 1 11 1221 111110 000112223333333211 0110 0 0 01
Q ss_pred HHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHH-HHHHhccC---CChHHHH
Q 046803 209 TCVCVLAACAQLG-------DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR-EIFDMMSE---LNVIAWT 277 (580)
Q Consensus 209 t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~---~~~~~~~ 277 (580)
.|...+.---..+ ..+.+..+|++++... +.+..+|-..+..+...|+.++|. ++|++... .+...|-
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl 382 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAF 382 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2333222221111 0122344455555442 334555555555555555555553 55554432 2333444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 046803 278 AMISGYGMHGYGTEAVELFHRMRAHGV---------RPN------------NVTFVAVLSACAHAGLVQEGHRVFASMRQ 336 (580)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~g~---------~pd------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 336 (580)
..+...-+.|++++|.++|+++..... .|+ ...|...+....+.|..+.|+.+|..+.+
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555555555543210 021 12344444444455555555555555543
Q ss_pred hcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC---Cc
Q 046803 337 EYGLLPGVEHHVCMVDLFGRAG-LLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE---NP 411 (580)
Q Consensus 337 ~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~ 411 (580)
.. ..+....|...+.+-.+.+ +.+.|..+|+..+..-| +...|...+......|+.+.|..+|+++++..|+ ..
T Consensus 463 ~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 463 LK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp TG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred hc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 20 0011222222222222322 35555555555553333 2444445555555555555555555555554442 22
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 412 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444445555555555555555543
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=1.1e-11 Score=120.33 Aligned_cols=213 Identities=11% Similarity=0.046 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHcCCCCcHHHhhHHhhHhh-------hcCCH-------HHHHHHHHhccC---C-ChHHHHHHHHHHHh
Q 046803 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYA-------RCGNV-------SKAREIFDMMSE---L-NVIAWTAMISGYGM 285 (580)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 285 (580)
++|..+|+++++.. +.+..+|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888898888864 677888888888776 35885 999999998765 3 45689999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH-H-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH-HcCCHHH
Q 046803 286 HGYGTEAVELFHRMRAHGVRPNN-V-TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG-RAGLLNE 362 (580)
Q Consensus 286 ~g~~~~A~~~~~~m~~~g~~pd~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 362 (580)
.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 45653 3 7888999999999999999999999752 2234555654444432 3699999
Q ss_pred HHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc---CCC-CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 363 AYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSV---EPE-NPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 363 A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
|.++|++++...| ++..|..++..+...|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998887777 4888999999999999999999999999986 443 5668888999999999999999999999
Q ss_pred HhCC
Q 046803 438 IQKG 441 (580)
Q Consensus 438 ~~~~ 441 (580)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8754
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=3.7e-12 Score=136.78 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHH
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCM 350 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 350 (580)
..+|+.|...|.+.|++++|++.|++.++. .|+ ...+..+..+|.+.|++++|.+.|++..+. .| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 456777777777777777777777777763 444 456777777777888888888888777642 35 36777778
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 429 (580)
..+|.+.|++++|++.|++++...|+ ...|..+..++...|++++|+..|+++++++|+++.++..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888777777774 77788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh
Q 046803 430 VEVVRNIMIQ 439 (580)
Q Consensus 430 a~~~~~~m~~ 439 (580)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776643
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=7.5e-12 Score=125.52 Aligned_cols=196 Identities=7% Similarity=0.000 Sum_probs=114.3
Q ss_pred HHhhHHhhHhhhcCCHHHHHHHHHhccC-----C-----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH---
Q 046803 243 VLATSLINMYARCGNVSKAREIFDMMSE-----L-----NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV-RPNN--- 308 (580)
Q Consensus 243 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~--- 308 (580)
.++..+...|...|++++|...+.+..+ + ...+++.+...|...|++++|+..|++..+... .++.
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3444455555555555555555544331 1 123555666666666666666666666553210 0111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC-----CCC-H
Q 046803 309 -VTFVAVLSACAHAGLVQEGHRVFASMRQEY---GLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE-----KPA-P 377 (580)
Q Consensus 309 -~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~p~-~ 377 (580)
.++..+...|...|++++|...|++..+-. +..| ....+..+...|.+.|++++|.+.+++++.. .|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 356666667777777777777777665411 2212 3556667777777777777777777666532 121 2
Q ss_pred HHHHHHHHHHHhcCC---chHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 378 AVWTAMLGACKMHKN---FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
..+..+...+...|+ +++|+..+++. ...|.....+..|+.+|...|++++|.+.+++..+
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 224556666777777 56666666555 22233345677788888888888888888887654
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=126.47 Aligned_cols=245 Identities=12% Similarity=0.080 Sum_probs=149.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHccCCC--------C---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHC------C
Q 046803 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPD--------K---SVVAWNSMISGYEQNGFAKEAIGLFNLMRDF------G 202 (580)
Q Consensus 140 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 202 (580)
+..++..+...|...|++++|...|+++.+ . ...+|..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999988754 1 2457889999999999999999999998764 2
Q ss_pred CCC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc------CC-CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChH
Q 046803 203 VNP-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ------GL-DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274 (580)
Q Consensus 203 ~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 274 (580)
-.| ...++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|.+.|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 182 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI--- 182 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence 223 3457888899999999999999999988764 21 223344555666666666666666665544320
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc------CCCC-----
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEY------GLLP----- 342 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p----- 342 (580)
+++... +..|+ ..++..+...+...|++++|...++++.+.. ...+
T Consensus 183 ---------------------~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 183 ---------------------YQTKLG-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp ---------------------HHHTSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred ---------------------HHHHhC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 000000 01111 1233444444445555555555554444210 0011
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 343 --GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 343 --~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
....+..+...+...+.+.+|...+++.....|+ ..+|..+..+|...|++++|...+++++++.|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1112222334444556666667777555555553 677888999999999999999999999887664
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=1.3e-11 Score=123.78 Aligned_cols=229 Identities=8% Similarity=-0.071 Sum_probs=162.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCC-CCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcC--C----CCcHHHhh
Q 046803 178 MISGYEQNGFAKEAIGLFNLMRDFG-VNPD----STTCVCVLAACAQLGDIDLGRWVHEFIVGQG--L----DVNVVLAT 246 (580)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 246 (580)
....+...|++++|+..|++..+.- -.+| ..++..+...+...|+++.|...+.+..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4455666777777777777765430 0122 2456666777777777777777777666431 1 11235677
Q ss_pred HHhhHhhhcCCHHHHHHHHHhccC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHH
Q 046803 247 SLINMYARCGNVSKAREIFDMMSE-----LN----VIAWTAMISGYGMHGYGTEAVELFHRMRAH----GVRP-NNVTFV 312 (580)
Q Consensus 247 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~ 312 (580)
.+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..|++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 778888888888888888877653 22 247888888999999999999999888762 2323 346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcC---CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhHcCCCCC-HHHHHHHHH
Q 046803 313 AVLSACAHAGLVQEGHRVFASMRQEYG---LLPGVEHHVCMVDLFGRAGL---LNEAYKFVKDVIGEKPA-PAVWTAMLG 385 (580)
Q Consensus 313 ~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~ll~ 385 (580)
.+...+...|++++|...+++..+... .+.....+..+...|...|+ +++|+.++ +..+..|+ ...+..+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL-ESKMLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHCcCHHHHHHHHHHHHH
Confidence 888899999999999999988765321 11123345678888889999 89999999 44444443 556788999
Q ss_pred HHHhcCCchHHHHHHHHHHhcC
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
.|...|++++|...+++++++.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=1.7e-11 Score=113.07 Aligned_cols=191 Identities=10% Similarity=-0.064 Sum_probs=109.5
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhccC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMSE----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVL 315 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll 315 (580)
++..+..+...|.+.|++++|.+.|++..+ ++...|..+...+...|++++|+..|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 445566666666666666666666665542 45555555666666666666666666666653 333 34555566
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---HHHHHHHHHHH
Q 046803 316 SACAHAGLVQEGHRVFASMRQEYGLLPGV-----EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA---PAVWTAMLGAC 387 (580)
Q Consensus 316 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~ll~~~ 387 (580)
.++...|++++|...|++..+...-.+.. ..|..+...+...|++++|++.|++++...|+ ...|..+...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 66666666666666666665432111111 34555666666666666666666666666664 34455555555
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.. .+...++++..+.+.++..|..+ .....+.+++|...+++..+.
T Consensus 164 ~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 33 23344555555555544333322 233445568888888888764
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=3.6e-10 Score=112.67 Aligned_cols=262 Identities=11% Similarity=-0.020 Sum_probs=168.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChh----HHHHHHHHHHhCCChHHHHHHHHHHHHcC--C-CC--cHHHhhHH
Q 046803 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDST----TCVCVLAACAQLGDIDLGRWVHEFIVGQG--L-DV--NVVLATSL 248 (580)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l 248 (580)
....+...|++++|...+++.....-..+.. .+..+...+...|++++|...+.+..+.. . .+ ...+.+.+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556677777777776665542111111 34444555666677777777766665421 0 11 12234566
Q ss_pred hhHhhhcCCHHHHHHHHHhccC----------C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--C--CHHHHHH
Q 046803 249 INMYARCGNVSKAREIFDMMSE----------L-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR--P--NNVTFVA 313 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--d~~t~~~ 313 (580)
...|...|++++|.+.+++..+ + ....+..+...+...|++++|...+++....... | ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6777777888888777776542 1 1235566777788888888888888887653211 1 1245667
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHhHcCCCCC-----HHHHHHH
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV-----CMVDLFGRAGLLNEAYKFVKDVIGEKPA-----PAVWTAM 383 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l 383 (580)
+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.....|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77788888999999988888764322111111111 2334577889999999999777654442 3356677
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 384 LGACKMHKNFDLGVEVAEHLLSVEPEN------PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 384 l~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
...+...|++++|...++++++..+.. ...+..++.+|...|+.++|...+++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888889999999999999887654221 13667788899999999999999888765
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=2.4e-11 Score=107.51 Aligned_cols=163 Identities=13% Similarity=0.052 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 354 (580)
.|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34444555555555555555555554421 123445555555666666666666666665542 122455566666666
Q ss_pred HHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 046803 355 GRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVV 433 (580)
Q Consensus 355 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 433 (580)
...|++++|.+.+++.+...| +...+..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 666777777776665554444 3566666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhC
Q 046803 434 RNIMIQK 440 (580)
Q Consensus 434 ~~~m~~~ 440 (580)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7766543
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=2.3e-11 Score=125.43 Aligned_cols=179 Identities=9% Similarity=-0.005 Sum_probs=159.5
Q ss_pred HHHHHHHHHhccC---CChHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 046803 258 VSKAREIFDMMSE---LNVIAWTAMISGYGMHGYG-TEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFA 332 (580)
Q Consensus 258 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~ 332 (580)
++++...++.... .+...|..+...|...|++ ++|+..|++..+. .|+ ...+..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666665543 4678899999999999999 9999999999885 444 6788999999999999999999999
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhc--------CCch
Q 046803 333 SMRQEYGLLPGVEHHVCMVDLFGRA---------GLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMH--------KNFD 394 (580)
Q Consensus 333 ~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~--------g~~~ 394 (580)
++. .+.|+...+..+..+|... |++++|++.+++++...|+ ...|..+..+|... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 997 4568888899999999999 9999999999999988884 88999999999999 9999
Q ss_pred HHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 395 LGVEVAEHLLSVEP---ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 395 ~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+|+..|+++++++| .++..|..++.+|...|++++|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 999999999999999999999999999987743
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=7.2e-10 Score=117.66 Aligned_cols=400 Identities=10% Similarity=0.009 Sum_probs=275.4
Q ss_pred CHHHHHHHHhcC---CCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCC---hhHHHHHHccCCC-----CChhhHH
Q 046803 7 HSPAYEAILKAG---PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF---ITYAQRIFFCIPS-----PDSFLFN 75 (580)
Q Consensus 7 ~~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~---~~~A~~~f~~~~~-----~~~~~~~ 75 (580)
|..++..++..+ +....++.++..+++. +..+...|...+..-.+.++ ++.+.++|++... |++..|.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 445566666554 4567789999998876 45567788888877777778 9999999987542 7888898
Q ss_pred HHHHHHHcCCCc--------cHHHHHHHHHHH-CCC-CCCh-hhHHHHHHHHH---------ccCChHHHHHHHHHHHHh
Q 046803 76 TLIIRNSKANFS--------TDSLLFYRRMIV-SNI-SPSN-YTFSAVIKSCA---------HLSILNLGRAVHCHVFVS 135 (580)
Q Consensus 76 ~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~ 135 (580)
.-+.-..+.++. +...++|+..+. .|. .|+. ..|...+.... ..++++.++.+|..++..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 887766555543 234477877654 466 6654 45555554432 234567789999998864
Q ss_pred CCCCchHHHHHHHHHHHhC-------------CCHHHHHHHHcc-------CCC--CC--------------------hh
Q 046803 136 GYDSDLHVQAALVNFYAKS-------------NNVDVARKVFDR-------MPD--KS--------------------VV 173 (580)
Q Consensus 136 g~~~~~~~~~~li~~y~~~-------------g~~~~A~~~f~~-------~~~--~~--------------------~~ 173 (580)
....-..+|......-... .+++.|...+.+ +.. |. ..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence 3333344554443322111 123344455543 211 00 13
Q ss_pred HHHHHHHHHHhCC-------ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHH-HHHHHHHHcCCCCcHHHh
Q 046803 174 AWNSMISGYEQNG-------FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR-WVHEFIVGQGLDVNVVLA 245 (580)
Q Consensus 174 ~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~ 245 (580)
.|...+.---.++ ..+.+..+|++.... .+-+...|...+..+...|+.+.|. .+++..+... |.+...+
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lw 381 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 5666665444433 123456778888765 3446677888888888889998996 9999998753 6677788
Q ss_pred hHHhhHhhhcCCHHHHHHHHHhccC-------------CC------------hHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046803 246 TSLINMYARCGNVSKAREIFDMMSE-------------LN------------VIAWTAMISGYGMHGYGTEAVELFHRMR 300 (580)
Q Consensus 246 ~~li~~y~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 300 (580)
-.++...-+.|+++.|.++|+++.+ |+ ...|...+....+.|..+.|..+|.+..
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8889999999999999999998763 21 2368888888888899999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---
Q 046803 301 AHGVRPNNVTFVAVLSACAHA-GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA--- 376 (580)
Q Consensus 301 ~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--- 376 (580)
+.-..+....|......-.+. ++.+.|..+|+...+.++ .+...+...++.....|+.+.|..+|++++...|+
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 751112233443333222333 458999999999987643 35666778888888999999999999888876662
Q ss_pred -HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 377 -PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 377 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
...|...+..-..+|+.+.+..+.+++.+..|+++
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 46799999999999999999999999999999864
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=5.8e-11 Score=109.50 Aligned_cols=205 Identities=10% Similarity=0.047 Sum_probs=161.6
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHH
Q 046803 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMIS 281 (580)
Q Consensus 205 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 281 (580)
.|+..+......+...|++++|...+...++...+++...+..+..+|.+.|++++|.+.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466788889999999999999999999999987437777887899999999999999999998874 34668999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---HHHHHHH
Q 046803 282 GYGMHGYGTEAVELFHRMRAHGVRPN-N-------VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG---VEHHVCM 350 (580)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~g~~pd-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 350 (580)
.|...|++++|+..|++..+. .|+ . ..+..+...+...|++++|...|+++.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999984 444 3 3577777888999999999999999873 4565 5677778
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
..+|...|+. .++++....+ +...+..+. ....+.+++|+..++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888766543 3333332222 344444333 34557789999999999999999988777766554
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=6.4e-11 Score=104.67 Aligned_cols=170 Identities=12% Similarity=0.045 Sum_probs=145.7
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 318 (580)
...+..+...|...|++++|.+.|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45567788889999999999999998875 467788899999999999999999999998752 33567788888899
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
...|++++|.+.++.+.+. .+.+...+..+...+...|++++|.+.+++.+...| +..++..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998864 234677888899999999999999999988887667 4788999999999999999999
Q ss_pred HHHHHHHhcCCCCcchH
Q 046803 398 EVAEHLLSVEPENPGHY 414 (580)
Q Consensus 398 ~~~~~~~~~~p~~~~~~ 414 (580)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999988876543
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=6.2e-11 Score=118.57 Aligned_cols=222 Identities=5% Similarity=-0.043 Sum_probs=127.4
Q ss_pred HHhCCChHHHHHHHHHHHHcC--CC---CcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-----CC-----hHHHHHHHH
Q 046803 217 CAQLGDIDLGRWVHEFIVGQG--LD---VNVVLATSLINMYARCGNVSKAREIFDMMSE-----LN-----VIAWTAMIS 281 (580)
Q Consensus 217 ~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 281 (580)
+...|++++|...+.++.+.. .+ ....++..+...|...|+++.|...+.+..+ ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 344555555555555554321 00 1233445555556666666665555554431 11 235566666
Q ss_pred HHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCCHHHHHHHHHH
Q 046803 282 GYGMHGYGTEAVELFHRMRAH----GVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEY---GLLPGVEHHVCMVDL 353 (580)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~ 353 (580)
.|...|++++|++.|++..+. +-.+ ...++..+...|...|++++|...|++..+.. +.+.....+..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 677777777777776665541 1111 12355666667777777777777777765411 111225566677777
Q ss_pred HHHcCCHHHHHHHHHhHcCC-----CCC-HHHHHHHHHHHHhcCC---chHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046803 354 FGRAGLLNEAYKFVKDVIGE-----KPA-PAVWTAMLGACKMHKN---FDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 424 (580)
|.+.|++++|.+.+++++.. .|. ...+..+...+...++ +++|+..+++. ...|.....+..++..|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 77788888888777666522 222 3345555566666666 56666666552 11233345666788888888
Q ss_pred CChhHHHHHHHHHHh
Q 046803 425 GRMDRVEVVRNIMIQ 439 (580)
Q Consensus 425 g~~~~a~~~~~~m~~ 439 (580)
|++++|.+.+++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888877654
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=1.4e-09 Score=108.64 Aligned_cols=228 Identities=11% Similarity=0.024 Sum_probs=162.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcC--C---C-CcHHHh
Q 046803 177 SMISGYEQNGFAKEAIGLFNLMRDFGV-NPD----STTCVCVLAACAQLGDIDLGRWVHEFIVGQG--L---D-VNVVLA 245 (580)
Q Consensus 177 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~ 245 (580)
.....+...|++++|+..|++..+... .+| ..++..+..++...|+++.|...+.+..+.. . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344456677888888888877765311 122 2356667777778888888887777766431 1 1 124567
Q ss_pred hHHhhHhhhcCCHHHHHHHHHhccC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHH
Q 046803 246 TSLINMYARCGNVSKAREIFDMMSE-----LN----VIAWTAMISGYGMHGYGTEAVELFHRMRA-----HGVRPNNVTF 311 (580)
Q Consensus 246 ~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~ 311 (580)
+.+..+|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|+..|++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 7788888888888888888876653 12 34677888889999999999999988876 32 2235677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCC--C-CHHHHHHHHHHHHHcCC---HHHHHHHHHhHcCCCCC-HHHHHHHH
Q 046803 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLL--P-GVEHHVCMVDLFGRAGL---LNEAYKFVKDVIGEKPA-PAVWTAML 384 (580)
Q Consensus 312 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~ll 384 (580)
..+...+.+.|++++|...+++..+...-. | ....+..+...|...|+ +.+|+..+ +..+..|+ ...+..+.
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~la 343 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF-EKKNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HhCCChhHHHHHHHHHH
Confidence 888889999999999999999887643321 2 24456667777878888 88999988 44444443 45677888
Q ss_pred HHHHhcCCchHHHHHHHHHHhc
Q 046803 385 GACKMHKNFDLGVEVAEHLLSV 406 (580)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~~~~~ 406 (580)
..|...|++++|...++++++.
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988753
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=7.8e-11 Score=126.53 Aligned_cols=165 Identities=16% Similarity=0.159 Sum_probs=142.6
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAV 314 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l 314 (580)
|.+...++.|..+|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|+..|++.++. .|+ ...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34567888888889999999999999888764 45778999999999999999999999998884 555 5688899
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCC
Q 046803 315 LSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKN 392 (580)
Q Consensus 315 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~ 392 (580)
..++...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.|++++...|+ ...|..|..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999998753 45 4788999999999999999999999999988885 8889999999999999
Q ss_pred chHHHHHHHHHHhcCC
Q 046803 393 FDLGVEVAEHLLSVEP 408 (580)
Q Consensus 393 ~~~a~~~~~~~~~~~p 408 (580)
+++|.+.+++++++.|
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 9999999999887543
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=1.6e-10 Score=110.92 Aligned_cols=186 Identities=10% Similarity=-0.024 Sum_probs=114.9
Q ss_pred hhhcCCHHHHHHHHHhccC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHH
Q 046803 252 YARCGNVSKAREIFDMMSE-----LN----VIAWTAMISGYGMHGYGTEAVELFHRMRAH----GVRP-NNVTFVAVLSA 317 (580)
Q Consensus 252 y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ll~a 317 (580)
|...|++++|.+.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+. |-.+ -..++..+..+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555555555544332 01 335566666666666666666666665541 1000 02356677777
Q ss_pred HHhc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCH--------HHHHHHH
Q 046803 318 CAHA-GLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP--------AVWTAML 384 (580)
Q Consensus 318 ~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~--------~~~~~ll 384 (580)
|... |++++|...|++..+...-..+ ...+..+...|.+.|++++|++.|++.+...|+. ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8775 8888888888877653211111 3467778888889999999999998777555431 1567777
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCcch-----HHHHHHHHH--hcCChhHHHHHHHHH
Q 046803 385 GACKMHKNFDLGVEVAEHLLSVEPENPGH-----YVMLSNIYA--LAGRMDRVEVVRNIM 437 (580)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~~m 437 (580)
.++...|++++|+..+++.+++.|..... +..++..|. ..+++++|.+.++.+
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 78888899999999999998888875543 344556664 456677777777544
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=3.2e-10 Score=108.92 Aligned_cols=219 Identities=11% Similarity=-0.002 Sum_probs=132.8
Q ss_pred CHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHHhCCChHHHHHHH
Q 046803 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF----GVNPD-STTCVCVLAACAQLGDIDLGRWVH 230 (580)
Q Consensus 156 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~ 230 (580)
++++|...|++. ...|...|++++|++.|.+..+. |-.++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777766553 66677777777777777766542 21111 235555555555555666555555
Q ss_pred HHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCC-C-
Q 046803 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH-GYGTEAVELFHRMRAHGVRP-N- 307 (580)
Q Consensus 231 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-d- 307 (580)
.+.++. +.+.|+...+ ..+|+.+...|... |++++|+..|++..+..... +
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 554432 1111222111 23566677777775 88888888888776521100 1
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHH-
Q 046803 308 ---NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV-----EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA- 378 (580)
Q Consensus 308 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~- 378 (580)
..++..+...+...|++++|...|++..+...-.+.. ..|..+..++...|++++|...|++.+...|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2457777888888888888888888887532111221 2566777888888999999999988887777522
Q ss_pred -----HHHHHHHHHH--hcCCchHHHHHHHHHHhcCCCCc
Q 046803 379 -----VWTAMLGACK--MHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 379 -----~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
.+..++.++. ..+++++|+..|+++..++|.+.
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 2344555554 34668888888887777777543
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=6e-09 Score=103.74 Aligned_cols=158 Identities=8% Similarity=-0.108 Sum_probs=81.8
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHCCCCCChh----hHHHHHHHHHccCChHHHHHHHHHHHHhCCC-Cc----hHHHHHH
Q 046803 77 LIIRNSKANFSTDSLLFYRRMIVSNISPSNY----TFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SD----LHVQAAL 147 (580)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 147 (580)
....+...|++++|...+++........+.. ++..+...+...|++++|...+.+.++.... .+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445667788888888888876653222221 2344445566677787777777776653211 11 1223445
Q ss_pred HHHHHhCCCHHHHHHHHccCCC-------C----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--C--ChhHHHH
Q 046803 148 VNFYAKSNNVDVARKVFDRMPD-------K----SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN--P--DSTTCVC 212 (580)
Q Consensus 148 i~~y~~~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 212 (580)
...|...|++++|...|++... + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 5556666666666665554321 1 1123444555555556666666555555432111 0 1123444
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 046803 213 VLAACAQLGDIDLGRWVHEFIV 234 (580)
Q Consensus 213 ll~a~~~~~~~~~a~~~~~~~~ 234 (580)
+...+...|++++|...+....
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555555555544
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=2.3e-10 Score=108.69 Aligned_cols=222 Identities=11% Similarity=0.108 Sum_probs=160.5
Q ss_pred HhCCChHHHHHHHHHHHHc-------CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-----------CChHHHHHH
Q 046803 218 AQLGDIDLGRWVHEFIVGQ-------GLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-----------LNVIAWTAM 279 (580)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 279 (580)
...|++++|..++.+.++. ..+....++..+...|...|++++|...|++..+ ....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888777652 2234567888999999999999999999987652 124578889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCC-CHHH
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAH------GVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEY-----GLLP-GVEH 346 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 346 (580)
...|...|++++|+..|++.... .-.|+ ..++..+...+...|++++|..+++++.+.. +..| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998763 11233 4577888889999999999999999987531 1123 3667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCC---------CCC-HHHHHHHHHHHHhcCCchHHHH------HHHHHHhcCCCC
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGE---------KPA-PAVWTAMLGACKMHKNFDLGVE------VAEHLLSVEPEN 410 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------~p~-~~~~~~ll~~~~~~g~~~~a~~------~~~~~~~~~p~~ 410 (580)
+..+...|.+.|++++|.+.+++.+.. .+. ...|..+.......+....+.. .++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999877632 232 3345444444444443333332 222222233555
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 411 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+.++..++.+|...|++++|.+.+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67888999999999999999999998865
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=7.8e-10 Score=104.23 Aligned_cols=188 Identities=12% Similarity=0.033 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHH
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN----NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHV 348 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 348 (580)
..+-.+...+.+.|++++|+..|+++.+. .|+ ...+..+..++...|++++|...|+.+.+.+.-.|. ...+.
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 33334444444444455555555444442 121 233344444444455555555555544433221121 23333
Q ss_pred HHHHHHHH--------cCCHHHHHHHHHhHcCCCCC-HHH-----------------HHHHHHHHHhcCCchHHHHHHHH
Q 046803 349 CMVDLFGR--------AGLLNEAYKFVKDVIGEKPA-PAV-----------------WTAMLGACKMHKNFDLGVEVAEH 402 (580)
Q Consensus 349 ~li~~~~~--------~g~~~~A~~~~~~~~~~~p~-~~~-----------------~~~ll~~~~~~g~~~~a~~~~~~ 402 (580)
.+..++.. .|++++|+..|++.+...|+ ... +..+...+...|++++|+..|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44444444 55555555555444433332 111 35678889999999999999999
Q ss_pred HHhcCCCCc---chHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCC
Q 046803 403 LLSVEPENP---GHYVMLSNIYALA----------GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPN 469 (580)
Q Consensus 403 ~~~~~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 469 (580)
+++..|+++ ..+..++.+|... |++++|...++++.+... .+|.
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-----------------------~~~~ 230 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-----------------------DSPL 230 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----------------------TCTH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----------------------CChH
Confidence 999998854 5788899999877 899999999999877431 3566
Q ss_pred hHHHHHHHHHHHHHHHH
Q 046803 470 TNEIYQYLDELMGRCRE 486 (580)
Q Consensus 470 ~~~~~~~l~~l~~~m~~ 486 (580)
..++...+.++...+.+
T Consensus 231 ~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 231 LRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777777777766654
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=1e-10 Score=99.99 Aligned_cols=141 Identities=9% Similarity=0.007 Sum_probs=111.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcC
Q 046803 281 SGYGMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAG 358 (580)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 358 (580)
..+...|++++|+..+++... ..|+. ..+..+...|...|++++|.+.|++..+. .| +...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 344556677777777777655 23332 34556777888888888888888888753 34 5788888999999999
Q ss_pred CHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHH-HHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 359 LLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEV-AEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 359 ~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
++++|+..|++++...|+ +.+|..+...+...|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999888888884 88899999999999999877665 589999999999999999988888775
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=1.8e-09 Score=101.68 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhc----------CCchHHHHHHHHHHhcCCCCcc-
Q 046803 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMH----------KNFDLGVEVAEHLLSVEPENPG- 412 (580)
Q Consensus 348 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~- 412 (580)
..+...|.+.|++++|+..|++.+...|+ ...+..+..++... |++++|+..++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56788899999999999999888765554 45677888888766 8899999999999999999864
Q ss_pred --hHHHHHHHHHhcCChh
Q 046803 413 --HYVMLSNIYALAGRMD 428 (580)
Q Consensus 413 --~~~~l~~~y~~~g~~~ 428 (580)
+...+..++...++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 3344555555444443
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=6.1e-09 Score=95.63 Aligned_cols=181 Identities=10% Similarity=0.002 Sum_probs=110.8
Q ss_pred HHhhHHhhHhhhcCCHHHHHHHHHhccC--CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHH
Q 046803 243 VLATSLINMYARCGNVSKAREIFDMMSE--LN----VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN----VTFV 312 (580)
Q Consensus 243 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~ 312 (580)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444455566667777777777766653 22 235566666677777777777777776653 2222 1222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHH-----------
Q 046803 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVW----------- 380 (580)
Q Consensus 313 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~----------- 380 (580)
.+..++...|.. .+ ..|..+...+...|++++|...|++.+...|+ ...+
T Consensus 83 ~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 333333321100 00 00111122222355666666666666655554 2222
Q ss_pred ------HHHHHHHHhcCCchHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 381 ------TAMLGACKMHKNFDLGVEVAEHLLSVEPENP---GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 381 ------~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
..+...+...|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 3456678899999999999999999999876 56889999999999999999999999886544
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=2.2e-09 Score=101.80 Aligned_cols=198 Identities=9% Similarity=0.010 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHc------CC-CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-------C---
Q 046803 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQ------GL-DVNVVLATSLINMYARCGNVSKAREIFDMMSE-------L--- 271 (580)
Q Consensus 209 t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--- 271 (580)
++..+...+...|++++|...+..+.+. +- +....++..+...|...|++++|.+.|.+..+ +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 4444455555555555555555544432 11 12234455555566666666666665555432 1
Q ss_pred -ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----
Q 046803 272 -NVIAWTAMISGYGMHGYGTEAVELFHRMRAH------GVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEY----- 338 (580)
Q Consensus 272 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----- 338 (580)
...+|..+...|...|++++|+..|++..+. +-.|+ ..++..+...+...|++++|..+++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 1345666666777777777777777766653 11222 3466677777788888888888887776421
Q ss_pred -CCCCC-HHHHHHHHHHHHHc------CCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 046803 339 -GLLPG-VEHHVCMVDLFGRA------GLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406 (580)
Q Consensus 339 -~~~p~-~~~~~~li~~~~~~------g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 406 (580)
...+. ...+..+...+... ..+.++...++......|+ ..++..+...|...|++++|...++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 22333333333322 2344555555222233343 566888889999999999999999988764
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=1.8e-08 Score=95.19 Aligned_cols=256 Identities=9% Similarity=0.006 Sum_probs=164.0
Q ss_pred HHhCCCHHHHHHHHccCCCCCh-hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 046803 151 YAKSNNVDVARKVFDRMPDKSV-VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229 (580)
Q Consensus 151 y~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 229 (580)
..-.|.+..++.-...+...+. ..-.-+.++|...|++.... .-.|....+..+... ...+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~-~~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQF-LDTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHH-HTTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHH-hccc----HHHH
Confidence 3445777777765555543222 22223446777777765310 112332233333322 2222 5566
Q ss_pred HHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 046803 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304 (580)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 304 (580)
+++..+.+ +++......+..+|...|++++|.+++.+... .+...+..++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66666554 44555556778888888899999888887643 2456777788889999999999999999877 4
Q ss_pred CC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC--
Q 046803 305 RP-----NNVTFVAVLSA--CAHAG--LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE-- 373 (580)
Q Consensus 305 ~p-----d~~t~~~ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 373 (580)
.| +..+...+..+ ....| +.++|..+|+++... .|+......+..++.+.|++++|.+.++.....
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 66 35666666666 33334 889999999998643 354333334444788899999999998544432
Q ss_pred --------CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 374 --------KP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 374 --------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.| |+.+...++......|+ +|.++++++.+..|++|.+. ++.+....|+++..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~-----------d~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK-----------HHQEIDAKFDELVR 304 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH-----------HHHHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH-----------HHHHHHHHHHHHHH
Confidence 25 46777677766666776 88999999999999987543 23445555555544
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=2.2e-09 Score=88.99 Aligned_cols=126 Identities=15% Similarity=0.218 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhc
Q 046803 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMH 390 (580)
Q Consensus 312 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~ 390 (580)
..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|.+.+++.+...| +...|..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 34444555555555555555555432 112344555555566666666666666655554444 355566666666666
Q ss_pred CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 391 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
|++++|...++++++..|.++..+..++.+|...|++++|.+.++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777666666666666777777777777777777766654
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.09 E-value=1.9e-08 Score=94.94 Aligned_cols=241 Identities=10% Similarity=0.045 Sum_probs=170.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCH
Q 046803 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258 (580)
Q Consensus 179 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 258 (580)
|.-..-.|.+..++.-..++.. ..+.....-+.+++...|.++.. ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 3445567888888874333221 11223444456788888876632 11233333444444333 322
Q ss_pred HHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 259 SKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 259 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
|...|++..+ ++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777877653 556667788899999999999999999987765423 3467778888999999999999999999
Q ss_pred HHhcCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046803 335 RQEYGLLP-----GVEHHVCMVDL--FGRAG--LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 335 ~~~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
.+. .| +..+...|+.+ ....| ++.+|..+|++.....|+..+-..|+.++.+.|++++|+..++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 753 46 24444555555 33334 99999999988777777744444555589999999999999998887
Q ss_pred c----------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 406 V----------EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 406 ~----------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
. +|+|+.++..++.++...|+ +|.++++++++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6 48899999899888888897 8999999998754
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=3.2e-09 Score=101.57 Aligned_cols=177 Identities=10% Similarity=-0.011 Sum_probs=140.7
Q ss_pred CHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 257 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
..+...+.+......+...+..+...+.+.|++++|+..|++..+. .| +...+..+..++...|++++|...++.+.
T Consensus 101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3445555555555555667777888888999999999999998874 44 45677788889999999999999998886
Q ss_pred HhcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC--c
Q 046803 336 QEYGLLPGVEHHV-CMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN--P 411 (580)
Q Consensus 336 ~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~ 411 (580)
.. .|+..... .....+.+.++.++|.+.+++.+...|+ ...+..+...+...|++++|+..++++++.+|++ .
T Consensus 179 ~~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 179 LQ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp GG---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred hh---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 43 35533322 2333466778888899999888888884 8889999999999999999999999999999987 7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 412 GHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 412 ~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
..+..|+.+|...|+.++|...+++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 889999999999999999998887754
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=5.4e-10 Score=120.45 Aligned_cols=168 Identities=9% Similarity=-0.031 Sum_probs=129.9
Q ss_pred hhcCCHHHHHHHHHhcc-----------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 046803 253 ARCGNVSKAREIFDMMS-----------ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAH 320 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~ 320 (580)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 66788888888888765 245567888888888888888888888888774 34 44677777778888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHH
Q 046803 321 AGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 398 (580)
.|++++|...|+++.+. .| +...+..+..+|.+.|++++ ++.|++++...|+ ...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888753 34 46677788888888888888 8888888777774 7778888888888888888888
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 399 VAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
.|+++++++|++..++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 8888888888888888888888876555
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=4.4e-10 Score=96.00 Aligned_cols=122 Identities=11% Similarity=0.027 Sum_probs=104.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCC
Q 046803 315 LSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKN 392 (580)
Q Consensus 315 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~ 392 (580)
...+...|++++|...++... ...|+ ...+..+...|.+.|++++|++.|++.+...| ++.+|..+..++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 345556788999999888775 33453 45566789999999999999999999998888 58899999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH-HHHHHh
Q 046803 393 FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVV-RNIMIQ 439 (580)
Q Consensus 393 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m~~ 439 (580)
+++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 477765
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=7.3e-09 Score=85.73 Aligned_cols=132 Identities=16% Similarity=0.254 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 354 (580)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56777788888888888888888887643 235567777788888888999999988888753 233566777888889
Q ss_pred HHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 355 GRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 355 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
.+.|++++|.+.+++++...| +..++..+...+...|++++|...++++++..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999977776666 4778888889999999999999999999888775
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.01 E-value=2.2e-09 Score=88.55 Aligned_cols=100 Identities=7% Similarity=0.127 Sum_probs=69.8
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 340 LLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 340 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
+.|+ ...+......|.+.|++++|++.|++++...| ++.+|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3443 44555666677777777777777766666666 366677777777777777777777777777777777777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 046803 418 SNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 418 ~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777777665
No 101
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.00 E-value=2.4e-09 Score=91.18 Aligned_cols=103 Identities=8% Similarity=0.022 Sum_probs=93.8
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHH
Q 046803 339 GLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416 (580)
Q Consensus 339 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 416 (580)
.+.|+ ...+..+...+.+.|++++|++.|++.+...| ++..|..+..++...|++++|+..|+++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45564 66777888999999999999999999888888 58899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 417 LSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 417 l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
++.+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998753
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=1.3e-08 Score=109.61 Aligned_cols=188 Identities=13% Similarity=0.025 Sum_probs=151.2
Q ss_pred HhCCChHHHHHHHHHHH--------HcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhc
Q 046803 218 AQLGDIDLGRWVHEFIV--------GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMH 286 (580)
Q Consensus 218 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 286 (580)
...|++++|.+.+++.. +.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999988 443 55678888999999999999999999998874 4678999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 046803 287 GYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 287 g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 364 (580)
|++++|+..|++..+. .| +...+..+..++...|++++ .+.|+++.+. .| +...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999984 45 45778888999999999999 9999998853 35 5778899999999999999999
Q ss_pred HHHHhHcCCCCC-HHHHHHHHHHHHhcCC-----chHHHHHHHHHHhcCCCCcc
Q 046803 365 KFVKDVIGEKPA-PAVWTAMLGACKMHKN-----FDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 365 ~~~~~~~~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 412 (580)
+.|++++...|+ ...|..+..++...++ .+...++.+.+.++.+.++.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999999999997 6778888888776665 23444444445455555444
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=3.5e-08 Score=89.61 Aligned_cols=173 Identities=8% Similarity=-0.016 Sum_probs=132.4
Q ss_pred HHHHHHhccC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhH
Q 046803 261 AREIFDMMSE-LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG----LVQEGHRVFASMR 335 (580)
Q Consensus 261 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 335 (580)
|.+.|++..+ .++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444544432 456677777777777788888888888877754 45566666666666 6 7888888888876
Q ss_pred HhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhHcCCCCC---HHHHHHHHHHHHh----cCCchHHHHHHHHHH
Q 046803 336 QEYGLLPGVEHHVCMVDLFGR----AGLLNEAYKFVKDVIGEKPA---PAVWTAMLGACKM----HKNFDLGVEVAEHLL 404 (580)
Q Consensus 336 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 404 (580)
+. .+...+..|..+|.. .+++++|+++|+++....|. +..+..|...|.. .+++++|+..|+++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 42 356667778888876 78999999999888877774 7888888888888 789999999999998
Q ss_pred hcCCCCcchHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 046803 405 SVEPENPGHYVMLSNIYALA-G-----RMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 405 ~~~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~~~ 442 (580)
+. |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66678899999999764 3 89999999999887653
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.98 E-value=3.5e-09 Score=102.38 Aligned_cols=221 Identities=10% Similarity=-0.024 Sum_probs=147.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHH
Q 046803 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264 (580)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 264 (580)
.|++++|.+++++..+.. +.. + +...++++.|...|..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456777777777765431 111 0 11135666666665544 3456667777777777
Q ss_pred HHhccC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 046803 265 FDMMSE-----LN----VIAWTAMISGYGMHGYGTEAVELFHRMRAHGV---RPN--NVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 265 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd--~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 766543 11 34677788888888888888888887664211 111 2466777778877 999999999
Q ss_pred HHHhHHhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC---C----HHHHHHHHHHHHhcCCchHHHHH
Q 046803 331 FASMRQEYGLLP----GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP---A----PAVWTAMLGACKMHKNFDLGVEV 399 (580)
Q Consensus 331 ~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~ 399 (580)
|++..+...-.. ....+..+...|.+.|++++|++.|++++...| + ...+..++..+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 988765321111 146778889999999999999999988774322 2 23566777778888999999999
Q ss_pred HHHHHhcCCCCcch-----HHHHHHHHHhcCChhHHHHH
Q 046803 400 AEHLLSVEPENPGH-----YVMLSNIYALAGRMDRVEVV 433 (580)
Q Consensus 400 ~~~~~~~~p~~~~~-----~~~l~~~y~~~g~~~~a~~~ 433 (580)
+++.+ +.|..... ...++..| ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88875433 33455555 56776666553
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=2.7e-09 Score=90.79 Aligned_cols=102 Identities=8% Similarity=0.032 Sum_probs=91.3
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHH
Q 046803 339 GLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416 (580)
Q Consensus 339 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 416 (580)
.+.| +...+..+...+.+.|++++|...|++.+...| +...|..+..++...|++++|+..|+++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4445 466777788899999999999999988887778 58889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 046803 417 LSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 417 l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
++.+|...|++++|.+.+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.97 E-value=7.1e-09 Score=109.61 Aligned_cols=160 Identities=11% Similarity=0.025 Sum_probs=127.6
Q ss_pred cCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046803 255 CGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 255 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999998875 45778999999999999999999999999984 44 467888889999999999999999
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhc---CCchHHHHHHHHHHhc
Q 046803 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMH---KNFDLGVEVAEHLLSV 406 (580)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 406 (580)
|++..+. .+.+...+..+..+|.+.|++++|.+.+++.+...| +...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999864 223578889999999999999999999998888778 478899999999999 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 046803 407 EPENPGHYVMLS 418 (580)
Q Consensus 407 ~p~~~~~~~~l~ 418 (580)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888776
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.96 E-value=7.5e-09 Score=90.96 Aligned_cols=77 Identities=9% Similarity=0.042 Sum_probs=56.2
Q ss_pred HHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 362 EAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 362 ~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
+|.+.+++.+...|+ ...+..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 356666666666663 6777777777788888888888888888777764 4477778888888888888887777654
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=1.7e-07 Score=89.29 Aligned_cols=212 Identities=12% Similarity=0.104 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcC--CHHHHHHHHHhccC---CChHHHHHHHHHH----Hhc---CChHH
Q 046803 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCG--NVSKAREIFDMMSE---LNVIAWTAMISGY----GMH---GYGTE 291 (580)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~ 291 (580)
++|..+.+.++..+ |.+..+|+.--..+...| +++++.+.++.+.. .+..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 45555555555544 334444555555555555 66666666665553 3344555443333 333 56777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCC------HHHH
Q 046803 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ--EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL------LNEA 363 (580)
Q Consensus 292 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A 363 (580)
++.+++++.+...+ |...+..-.-.+.+.|.++ ++.+.++.+.+. -.-+...|+.-..++.+.|+ ++++
T Consensus 129 EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 129 EFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 77777777764322 4556655555666666666 777777777753 12345566555555556665 8889
Q ss_pred HHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchH-HHHHHHHHHhcC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 364 YKFVKDVIGEKP-APAVWTAMLGACKMHKNFDL-GVEVAEHLLSVE---PENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 364 ~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
++.+++++...| |...|+.+...+.+.|+... ...+.+++.+++ |.++.++..++.+|.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999888888788 58889888888888887544 556777777766 7788888899999999999999999999987
Q ss_pred h
Q 046803 439 Q 439 (580)
Q Consensus 439 ~ 439 (580)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.94 E-value=1.6e-08 Score=106.83 Aligned_cols=153 Identities=10% Similarity=-0.050 Sum_probs=107.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHH
Q 046803 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELF 296 (580)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 296 (580)
.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888888888887764 55678888888899999999999999988764 35678888888899999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHhHcCC
Q 046803 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA---GLLNEAYKFVKDVIGE 373 (580)
Q Consensus 297 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~ 373 (580)
++..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++.+..
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9888742 2245677888888889999999999998887531 23467788888888888 8999999999887766
Q ss_pred CCC
Q 046803 374 KPA 376 (580)
Q Consensus 374 ~p~ 376 (580)
.|+
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 664
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=4e-08 Score=88.90 Aligned_cols=126 Identities=8% Similarity=0.035 Sum_probs=52.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHH
Q 046803 279 MISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGR 356 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 356 (580)
+...|.+.|++++|+..|++..+. .| +...+..+..++...|++++|...|+++.+. .| +...+..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 344444444444444444444442 22 2334444444444455555555555444431 22 24444444444433
Q ss_pred cCC--HHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 357 AGL--LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 357 ~g~--~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
.|. .+++...++..+...|....+..+..++...|++++|+..|++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 322 22333333222221111222333344444455555555555555555554
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=8.2e-09 Score=99.78 Aligned_cols=197 Identities=7% Similarity=-0.102 Sum_probs=151.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046803 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299 (580)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 299 (580)
.|++++|.+++.+..+.. +.. .+...+++++|...|.+. ...|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 467788999988887642 111 122258899999988764 56788999999999999987
Q ss_pred HhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC--C--CHHHHHHHHHHHHHcCCHHHHHHHHHhH
Q 046803 300 RAH----GVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL--P--GVEHHVCMVDLFGRAGLLNEAYKFVKDV 370 (580)
Q Consensus 300 ~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 370 (580)
.+. +-.+. ..+|..+...|...|++++|...|++..+-+.-. + ....+..+..+|.+ |++++|++.|+++
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 652 11111 3478888889999999999999999876542111 1 14677888999988 9999999999888
Q ss_pred cCCCC---C----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 371 IGEKP---A----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP------GHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 371 ~~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
+...| + ..++..+...+...|++++|+..+++++++.|.+. ..+..++.+|...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 74332 1 46788999999999999999999999998765543 26667788889999999999999998
Q ss_pred H
Q 046803 438 I 438 (580)
Q Consensus 438 ~ 438 (580)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=3e-08 Score=89.72 Aligned_cols=123 Identities=9% Similarity=-0.025 Sum_probs=63.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHK 391 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g 391 (580)
+..++...|++++|...|++..+. .| +...+..+..+|...|++++|++.|++.+...|+ +.+|..+...+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK---APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 455556666666666666665532 23 3555555666666666666666666555555553 555555555554443
Q ss_pred C--chHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 392 N--FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 392 ~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+ .+.+...++++....|. ...+..++.++...|++++|...+++..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2 23334444444322221 123344455555566666666666665543
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=3e-08 Score=87.04 Aligned_cols=156 Identities=10% Similarity=-0.015 Sum_probs=118.0
Q ss_pred hhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHh
Q 046803 245 ATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA-CAH 320 (580)
Q Consensus 245 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a-~~~ 320 (580)
...+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+......+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 44556677888999999999988774 45678888888999999999999999887763 3443322222111 122
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---HHHHHHHHHHHHhcCCchHH
Q 046803 321 AGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA---PAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a 396 (580)
.+...+|...+++..+. .| +...+..+...+...|++++|.+.|++.+...|+ ...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22333467888887753 35 5788888999999999999999999888888875 55899999999999999999
Q ss_pred HHHHHHHHh
Q 046803 397 VEVAEHLLS 405 (580)
Q Consensus 397 ~~~~~~~~~ 405 (580)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=2e-08 Score=82.72 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=97.2
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHH
Q 046803 304 VRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWT 381 (580)
Q Consensus 304 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 381 (580)
+.|+. ..+......+.+.|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|++.+++++...|+ ...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44544 45667788889999999999999988753 2235788888999999999999999999888888884 88899
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
.+..++...|++++|+..|+++++++|+++.++..|..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999998888777654
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.88 E-value=2.5e-07 Score=88.54 Aligned_cols=161 Identities=6% Similarity=-0.063 Sum_probs=119.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHH
Q 046803 279 MISGYGMHGYGTEAVELFHRMRAHG-VRPNNV----TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVC 349 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 349 (580)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+.+.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4667788888999999988887632 223321 2334556667778899999999888753222223 346888
Q ss_pred HHHHHHHcCCHHHHHHHHHhHc-------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------cchHH
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVI-------GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN------PGHYV 415 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 415 (580)
+...|...|++++|.+.|++++ ...|. ..++..+...|...|++++|+..+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8999999999999999998877 22222 4478899999999999999999999998765332 56788
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHh
Q 046803 416 MLSNIYALAGR-MDRVEVVRNIMIQ 439 (580)
Q Consensus 416 ~l~~~y~~~g~-~~~a~~~~~~m~~ 439 (580)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999888754
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.88 E-value=4.5e-08 Score=88.67 Aligned_cols=126 Identities=11% Similarity=0.020 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHh
Q 046803 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKM 389 (580)
Q Consensus 311 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~ 389 (580)
+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|++.+++.+...| +...|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3445556667777777777776552 45666777777777778888888888777776666 46677778888888
Q ss_pred cCCchHHHHHHHHHHhcCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 390 HKNFDLGVEVAEHLLSVEPENP----------------GHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 390 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
.|++++|+..++++++..|.+. ..+..++.+|...|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888777766 778888888888888888888888887653
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=6.9e-08 Score=88.53 Aligned_cols=186 Identities=11% Similarity=0.005 Sum_probs=130.0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--cHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CCh----HHHH
Q 046803 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV--NVVLATSLINMYARCGNVSKAREIFDMMSE--LNV----IAWT 277 (580)
Q Consensus 206 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~ 277 (580)
+...+..+...+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|++..+ |+. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667778899999999999999999864221 246788889999999999999999999874 332 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhc
Q 046803 278 AMISGYGM------------------HGYGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGHRVFASMRQEY 338 (580)
Q Consensus 278 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 338 (580)
.+..++.. .|+.++|+..|+++++. .|+.. ...... .. ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RL------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HH------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HH------HHHHHHH----
Confidence 55555554 45666777777766653 34332 111100 00 0000000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 339 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
......+...|.+.|++++|+..|++.+...|+ ...+..+..++.+.|+.++|+..++++....|++..
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 011234677889999999999999888877675 256888999999999999999999999998887643
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.85 E-value=3.3e-06 Score=86.80 Aligned_cols=182 Identities=12% Similarity=-0.039 Sum_probs=97.3
Q ss_pred CChhHHHHHHccCCC--CChhhHHHHHHHHHcCCC-ccHHHHHHHHHHHC-CCCC-ChhhHHHHHHHHH----ccCChHH
Q 046803 54 GFITYAQRIFFCIPS--PDSFLFNTLIIRNSKANF-STDSLLFYRRMIVS-NISP-SNYTFSAVIKSCA----HLSILNL 124 (580)
Q Consensus 54 ~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~a~~----~~~~~~~ 124 (580)
++++.+.++|++... |++..|..-+.-..+.+. .+....+|+..+.. |..| +...|...+..+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 678899999987553 788889888877766653 45677788877654 5434 4455555555433 2356778
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHh-------------CCCHHHHHHHHccCCC----CChhHHHHHHHHHHhCCC
Q 046803 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAK-------------SNNVDVARKVFDRMPD----KSVVAWNSMISGYEQNGF 187 (580)
Q Consensus 125 a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~ 187 (580)
++.+|+.+++.....-...|......-.. .+.+..|+.+++.+.. .+...|...+.--..++.
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 89999998874322222333332221111 0112223333222211 123345444443222110
Q ss_pred -------hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 046803 188 -------AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236 (580)
Q Consensus 188 -------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 236 (580)
.+.+..+|+++... .+-+...|...+.-+...|+.+.|..+++..++.
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 23345566666553 2334455555555556666666666666666665
No 119
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.84 E-value=3.6e-08 Score=83.11 Aligned_cols=102 Identities=11% Similarity=-0.003 Sum_probs=89.3
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHH
Q 046803 339 GLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416 (580)
Q Consensus 339 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 416 (580)
.+.| +...+..+...+.+.|++++|.+.|++.+...| +...|..+..++...|++++|+..|+++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344 355666778888999999999999988887778 58889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 046803 417 LSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 417 l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
++.+|...|++++|.+.+++..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=2e-07 Score=89.25 Aligned_cols=166 Identities=5% Similarity=-0.106 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC--CCC--H
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-N----VTFVAVLSACAHAGLVQEGHRVFASMRQEYGL--LPG--V 344 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 344 (580)
..+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...++...+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778888999999998888776432211 1 12334555667788999999999887642111 111 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhHc---CCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC------C
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDVI---GEKPA-----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE------N 410 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 410 (580)
..|+.+...|...|++++|.+.+++++ ...|+ ..++..+...|...|++++|+..+++++++.+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578888999999999999999998776 22332 257888999999999999999999998875422 1
Q ss_pred cchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 046803 411 PGHYVMLSNIYALAGRMDRV-EVVRNIMIQ 439 (580)
Q Consensus 411 ~~~~~~l~~~y~~~g~~~~a-~~~~~~m~~ 439 (580)
..+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 46788899999999999999 777777653
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.81 E-value=1.6e-06 Score=82.67 Aligned_cols=230 Identities=9% Similarity=0.013 Sum_probs=169.8
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhCC--ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh----hhc
Q 046803 183 EQNGFAKEAIGLFNLMRDFGVNPDST-TCVCVLAACAQLG--DIDLGRWVHEFIVGQGLDVNVVLATSLINMY----ARC 255 (580)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~ 255 (580)
.+....++|++++.+++.. .|+.. .|+.--.++...+ +++++...++.++... +.+..+|+.-...+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 3344456888888888874 45443 5666666777777 8888888888888775 55566665544444 444
Q ss_pred ---CCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----
Q 046803 256 ---GNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGT--EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL---- 323 (580)
Q Consensus 256 ---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~---- 323 (580)
++++++.++++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...++.-.....+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 788899999888874 57778888877888888887 999999999986443 66677666666666666
Q ss_pred --HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHhHcCCC---C-CHHHHHHHHHHHHhcCCchHH
Q 046803 324 --VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE-AYKFVKDVIGEK---P-APAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 324 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~---p-~~~~~~~ll~~~~~~g~~~~a 396 (580)
++++.+.++.+... -+-|...|+.+..++.+.|+..+ +.++..+..... | ++..+..+...+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 88899999888753 23367888888888888888554 555665555433 4 678899999999999999999
Q ss_pred HHHHHHHHh-cCCCCcchHHHHH
Q 046803 397 VEVAEHLLS-VEPENPGHYVMLS 418 (580)
Q Consensus 397 ~~~~~~~~~-~~p~~~~~~~~l~ 418 (580)
+++++.+.+ .+|.+...|...+
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHH
Confidence 999999986 7998766665443
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.80 E-value=8.2e-08 Score=82.86 Aligned_cols=129 Identities=7% Similarity=-0.071 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGAC 387 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~ 387 (580)
..+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++.+...| +...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34556666777788888888888877653 223567777888888889999999999988887777 477888899999
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI--YALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~~m~~ 439 (580)
...|++++|...++++++..|.++..+..+..+ +...|++++|.+.+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999988877554444 7888999999999887643
No 123
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.80 E-value=2.1e-07 Score=88.73 Aligned_cols=159 Identities=7% Similarity=-0.109 Sum_probs=81.4
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA-VLSA 317 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~a 317 (580)
...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|...+++.... .|+...... ....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 33334444444444555555555544432 23344445555555555555555555554432 233322111 1122
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---HHHHHHHHHHHHhcCCch
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA---PAVWTAMLGACKMHKNFD 394 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~ 394 (580)
+...++.++|...+++.... -+.+...+..+...|...|++++|++.+++.+...|+ ...+..++..+...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 44445555555555555432 1223555566666666666666666666666555553 445666666666666666
Q ss_pred HHHHHHHHHH
Q 046803 395 LGVEVAEHLL 404 (580)
Q Consensus 395 ~a~~~~~~~~ 404 (580)
+|...|++.+
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666666654
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.80 E-value=2.9e-07 Score=83.44 Aligned_cols=160 Identities=9% Similarity=-0.083 Sum_probs=86.2
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC-CChHHHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE-LNVIAWTAMISGYGMHG----YGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
+..+..|..+|...+++++|.+.|++..+ .+..++..|...|.. + +.++|+.+|++..+.| +...+..|..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 33444444444444555555555444432 233444444444444 3 5555555555555433 3344445555
Q ss_pred HHHh----cCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHhHcCCCCCHHHHHHHHH
Q 046803 317 ACAH----AGLVQEGHRVFASMRQEYGLLPG---VEHHVCMVDLFGR----AGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385 (580)
Q Consensus 317 a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ll~ 385 (580)
.|.. .+++++|..+|++..+ ..|. ...+..|..+|.. .+++++|...|+++....+++..+..|..
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGM 170 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5544 5566666666666542 2231 4555566666666 66677777777666544334555666666
Q ss_pred HHHhc-C-----CchHHHHHHHHHHhcCC
Q 046803 386 ACKMH-K-----NFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 386 ~~~~~-g-----~~~~a~~~~~~~~~~~p 408 (580)
.|... | +.++|...|+++.+.+.
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 66532 2 67777777777776653
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=2.9e-07 Score=83.22 Aligned_cols=143 Identities=10% Similarity=-0.058 Sum_probs=69.5
Q ss_pred HHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 046803 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326 (580)
Q Consensus 247 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 326 (580)
.+...|...|++++|.+.|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 334444455555555555555544444555555555555555555555555544421 1123344444444444444444
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046803 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 327 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
|...|+...+...-.+... .....+...|+ ...|..+..++...|++++|...++++++
T Consensus 90 A~~~~~~al~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLID--------------------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEE--------------------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCccHHH--------------------HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444444432111000000 00000012222 35677777777777778888888887777
Q ss_pred cCCCC
Q 046803 406 VEPEN 410 (580)
Q Consensus 406 ~~p~~ 410 (580)
..|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 77764
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.77 E-value=5.8e-08 Score=79.77 Aligned_cols=97 Identities=10% Similarity=0.028 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
...+..+...+.+.|++++|++.|++.+...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44566777888889999999999988887777 47888889999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 046803 423 LAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m~~~ 440 (580)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999888764
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=1.3e-07 Score=76.83 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHH
Q 046803 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGA 386 (580)
Q Consensus 308 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~ 386 (580)
...+..+...+...|++++|.+.|+++.+. .+.+...+..+...+.+.|++++|...+++++...| +..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666667777778888888888777653 123466777788888888888888888877776555 47778888888
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046803 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425 (580)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 425 (580)
+...|++++|...++++++..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999988988888888888776654
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.76 E-value=9.8e-08 Score=78.37 Aligned_cols=118 Identities=10% Similarity=-0.018 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHH
Q 046803 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGA 386 (580)
Q Consensus 308 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~ 386 (580)
...+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++.+...|+ ...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345666677777888888888888887653 2235677778888888889999999888877766664 7788888889
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 046803 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427 (580)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 427 (580)
+...|++++|...++++++..|.++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888888999998888775
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.76 E-value=8.6e-08 Score=79.16 Aligned_cols=116 Identities=10% Similarity=0.054 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHH
Q 046803 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLG 385 (580)
Q Consensus 308 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~ 385 (580)
...+..+...+...|++++|...|+...+ ..| +...+..+...|...|++++|.+.+++.+...| +...|..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34566666677777777777777777653 233 466777777888888888888888877776666 4777888888
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
++...|++++|+..++++++..|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888877664
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=9.3e-08 Score=93.50 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
...|..+..+|.+.|++++|++.+++++...| +...|..+..++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 46788899999999999999999999988888 58889999999999999999999999999999999999999999999
Q ss_pred hcCChhHH-HHHHHHHH
Q 046803 423 LAGRMDRV-EVVRNIMI 438 (580)
Q Consensus 423 ~~g~~~~a-~~~~~~m~ 438 (580)
..|++++| .+.++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44666664
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.74 E-value=4.5e-07 Score=86.80 Aligned_cols=164 Identities=7% Similarity=-0.093 Sum_probs=121.7
Q ss_pred HHhhHHhhHhhhcCCHHHHHHHHHhccC--C-Ch------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--H
Q 046803 243 VLATSLINMYARCGNVSKAREIFDMMSE--L-NV------IAWTAMISGYGMHGYGTEAVELFHRMRAHGV---RPN--N 308 (580)
Q Consensus 243 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd--~ 308 (580)
..+...+..|...|++++|.+.+....+ + +. ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567778888999999888876542 1 11 2334456667788999999999999875321 122 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-------
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-----VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA------- 376 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------- 376 (580)
.++..+...|...|++++|..+|+++.+.....|+ ...+..+...|.+.|++++|++.+++++...++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888889999999999999999988732211222 257888999999999999999999887733222
Q ss_pred HHHHHHHHHHHHhcCCchHH-HHHHHHHHhc
Q 046803 377 PAVWTAMLGACKMHKNFDLG-VEVAEHLLSV 406 (580)
Q Consensus 377 ~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 406 (580)
..+|..+...+...|++++| ...+++++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 67789999999999999999 7778887753
No 132
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.74 E-value=9.3e-07 Score=90.95 Aligned_cols=374 Identities=9% Similarity=-0.058 Sum_probs=206.0
Q ss_pred hhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC-hHHHHHHHHHHHH
Q 046803 56 ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI-LNLGRAVHCHVFV 134 (580)
Q Consensus 56 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~ 134 (580)
++.|+.+|+.+. ..+-. |+++.+..+|++.+.. .|+...|..-+.-..+.++ .+....+|+.++.
T Consensus 11 i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~ 76 (493)
T 2uy1_A 11 LSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLG 76 (493)
T ss_dssp -CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHH
T ss_pred hHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 566666666543 22211 7888888888888763 4687777777766655543 3456777777776
Q ss_pred h-CC-CCchHHHHHHHHHHHh----CCCHHHHHHHHccCCC-C--Ch-hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 046803 135 S-GY-DSDLHVQAALVNFYAK----SNNVDVARKVFDRMPD-K--SV-VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204 (580)
Q Consensus 135 ~-g~-~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 204 (580)
. |. ..+..+|...+..+.. .++++.++++|++... | +. ..|......- +......+..++.+..
T Consensus 77 ~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~----- 150 (493)
T 2uy1_A 77 QFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTL----- 150 (493)
T ss_dssp HSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH-----
T ss_pred HcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh-----
Confidence 4 43 2356777777766542 3567778888877644 2 11 1222221111 1111112222221110
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhc--C-----CHHHHHHHHHhccC---CChH
Q 046803 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC--G-----NVSKAREIFDMMSE---LNVI 274 (580)
Q Consensus 205 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~--g-----~~~~A~~~~~~~~~---~~~~ 274 (580)
+.+..|+.++..+...--..+...|...++.-... | ..+.+..+|+++.. .+..
T Consensus 151 ----------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~ 214 (493)
T 2uy1_A 151 ----------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEE 214 (493)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHH
Confidence 12233444444333210001233444444432211 1 03345667776653 3466
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--------CCC---C
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG--------LLP---G 343 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~~p---~ 343 (580)
.|...+.-+.+.|+.++|..+|++.... |+...+.. +|......++ +++.+.+.+- ..+ .
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKEL 285 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHHHHTC----------CHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHHHHHHhhccchhhhhccccc
Confidence 7888888888889999999999998886 55433222 2222111111 1233322210 001 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcC-CchHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHK-NFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
...|...++.+.+.+.++.|..+|+++ ...+ +..+|......-...+ +.+.|..+|+.+++..|+++..+...++..
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 355777777777888899999999777 3222 3445543333333333 699999999999988888887777788888
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcC
Q 046803 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488 (580)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g 488 (580)
.+.|+.+.|..+++++.+ . ..-|. .+..-...+|+.+.+.+.+++....++..+
T Consensus 365 ~~~~~~~~aR~l~er~~k-----~-~~lw~-------~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~ 418 (493)
T 2uy1_A 365 LRIGDEENARALFKRLEK-----T-SRMWD-------SMIEYEFMVGSMELFRELVDQKMDAIKADA 418 (493)
T ss_dssp HHHTCHHHHHHHHHHSCC-----B-HHHHH-------HHHHHHHHHSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHH-----H-HHHHH-------HHHHHHHHCCCHHHHHHHHHHHHHHhcccc
Confidence 889999999999988621 0 00010 011112345666666666777666666444
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.71 E-value=3.8e-06 Score=80.26 Aligned_cols=160 Identities=6% Similarity=-0.110 Sum_probs=121.6
Q ss_pred HHhhHhhhcCCHHHHHHHHHhccCC-----C----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHH
Q 046803 247 SLINMYARCGNVSKAREIFDMMSEL-----N----VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR-PN----NVTFV 312 (580)
Q Consensus 247 ~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd----~~t~~ 312 (580)
..+..+...|++++|...+++..+. + ...+..+...+...|++++|+..|++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999887641 1 112334666677788999999999999873222 23 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCC------CCC-HHHH
Q 046803 313 AVLSACAHAGLVQEGHRVFASMRQEY----GLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGE------KPA-PAVW 380 (580)
Q Consensus 313 ~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~p~-~~~~ 380 (580)
.+..+|...|++++|..+|+++.+.. +..+. ...+..+...|.+.|++++|.+.+++++.. .+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88899999999999999999987422 11222 447888999999999999999999887732 222 6789
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHHhc
Q 046803 381 TAMLGACKMHKN-FDLGVEVAEHLLSV 406 (580)
Q Consensus 381 ~~ll~~~~~~g~-~~~a~~~~~~~~~~ 406 (580)
..+..++...|+ +++|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999995 59999999998753
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.70 E-value=6.9e-08 Score=84.69 Aligned_cols=120 Identities=3% Similarity=0.015 Sum_probs=92.9
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHH-HHhcCCc--hH
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGA-CKMHKNF--DL 395 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~-~~~~g~~--~~ 395 (580)
..|++++|...++...+. .+.+...+..+...|...|++++|.+.|++.+...| +...|..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456777788788777653 123567778888888888888888888877776666 46777778877 7788888 99
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
|+..++++++.+|.++..+..++.+|...|++++|...+++..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999999899888888889999999999999999998887753
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.68 E-value=6.6e-08 Score=78.87 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 424 (580)
.+..+...+.+.|++++|+..|++.+...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 345577788899999999999988888888 5888999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 046803 425 GRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 425 g~~~~a~~~~~~m~~~~ 441 (580)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887643
No 136
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.65 E-value=1.2e-07 Score=78.11 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc-------hHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG-------HYV 415 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~ 415 (580)
...+..+...+.+.|++++|++.|++++...|+ +..|..+..+|...|++++|+..++++++++|+++. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667889999999999999999999988884 888999999999999999999999999998887653 677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 046803 416 MLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 416 ~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.++.+|...|++++|.+.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788899999999999999998765
No 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=2.5e-07 Score=76.94 Aligned_cols=99 Identities=9% Similarity=-0.034 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
.+...+..+...+...|++++|...|++.+...|+ ...|..+...+...|++++|+..++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35777888888889999999999999888877774 78888899999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 046803 421 YALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 421 y~~~g~~~~a~~~~~~m~~~ 440 (580)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.64 E-value=1.7e-07 Score=81.00 Aligned_cols=96 Identities=11% Similarity=0.029 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
...+..+...+.+.|++++|++.|++.+...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44455555666666666666666666655555 35556666666666666666666666666666666666666666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 046803 423 LAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m~~ 439 (580)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666666654
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=6.5e-08 Score=92.04 Aligned_cols=189 Identities=7% Similarity=-0.130 Sum_probs=100.3
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSA 317 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a 317 (580)
...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34444555555556666666666655442 24555666666666666666666666666553 23 33455556666
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHH
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPGV-EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 396 (580)
+...|++++|...|+...+.. |+. ..+...+....+..........- .....++..+...+.. + ..|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNSIE--ERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHHHH--HTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 666666666666666654321 110 00001111111111111111111 1122223333333322 2 25777888
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 046803 397 VEVAEHLLSVEPENPGHYVMLSNIYALA-GRMDRVEVVRNIMIQ 439 (580)
Q Consensus 397 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~ 439 (580)
++.++++++.+|++......+...+.+. +++++|.++|..+.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888888887776666776666665 678888888887755
No 140
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.63 E-value=1.3e-07 Score=97.07 Aligned_cols=118 Identities=8% Similarity=-0.025 Sum_probs=99.3
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCc
Q 046803 316 SACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNF 393 (580)
Q Consensus 316 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~ 393 (580)
..+.+.|++++|.+.|+++.+. .| +...|..+..+|.+.|++++|++.+++++...|+ ...|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456778899999999888753 34 4788889999999999999999999999988884 88899999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCChhHHHHHHHH
Q 046803 394 DLGVEVAEHLLSVEPENPGHYVMLSNI--YALAGRMDRVEVVRNI 436 (580)
Q Consensus 394 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~~ 436 (580)
++|++.+++++++.|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999888 8899999999999874
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=9.9e-08 Score=80.98 Aligned_cols=115 Identities=7% Similarity=-0.055 Sum_probs=91.6
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC
Q 046803 296 FHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374 (580)
Q Consensus 296 ~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 374 (580)
|+++.. +.|+. ..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.|++++...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 34433 45666777888899999999999988753 22357788888999999999999999998888777
Q ss_pred C-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 375 P-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 375 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
| ++..|..+..++...|++++|+..|++++++.|+++...
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 7 478888999999999999999999999999999877653
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.61 E-value=4.7e-06 Score=80.30 Aligned_cols=223 Identities=12% Similarity=0.013 Sum_probs=120.5
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCH
Q 046803 181 GYEQNGFAKEAIGLFNLMRDFGVNPDS-TTCVCVLAACAQLG-DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258 (580)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 258 (580)
...+.+..++|++++.+++.. .|+. ..|+.--.++...+ .++++..+++.+++.. +.+..+|+.-..++.+.
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l--- 136 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRI--- 136 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH---
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHh---
Confidence 333444455666666666553 3332 23444444444444 3555555555555443 33444444433333333
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--------HHHHH
Q 046803 259 SKAREIFDMMSELNVIAWTAMISGYGMHG-YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV--------QEGHR 329 (580)
Q Consensus 259 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~--------~~a~~ 329 (580)
.+ ++++++++++++.+...+ |...+..-.-...+.|.+ .++.+
T Consensus 137 ---------------------------~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe 188 (349)
T 3q7a_A 137 ---------------------------SPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELD 188 (349)
T ss_dssp ---------------------------CCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred ---------------------------cCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 03 444555555554442211 233333222222222222 36666
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCc--------
Q 046803 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGL-------LNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNF-------- 393 (580)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~-------- 393 (580)
.++++.+. -.-+...|+....++.+.++ ++++++.+++++...| |...|+.+-..+.+.|+.
T Consensus 189 ~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 189 WCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccc
Confidence 66666643 12355666666666666665 6788888888887777 577788777777766654
Q ss_pred ------------hHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 394 ------------DLGVEVAEHLLSVE------PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 394 ------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
........++.... +..+.+...|+.+|...|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222222 45566778899999999999999999999864
No 143
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.60 E-value=1.6e-07 Score=74.75 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC--CcchHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE--NPGHYVMLSNI 420 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 420 (580)
...+..+...+.+.|++++|...+++.+...| +...|..+...+...|++++|+..++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 44555667777778888888888877766555 4667777778888888888888888888888887 77788888888
Q ss_pred HHhc-CChhHHHHHHHHHHhCC
Q 046803 421 YALA-GRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 421 y~~~-g~~~~a~~~~~~m~~~~ 441 (580)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888776654
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.60 E-value=2e-07 Score=79.10 Aligned_cols=104 Identities=8% Similarity=-0.065 Sum_probs=81.2
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHH
Q 046803 304 VRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVW 380 (580)
Q Consensus 304 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 380 (580)
+.|+. ..+..+...+.+.|++++|...|+.+.+. .| +...|..+..+|.+.|++++|++.|++++...|+ +..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 34443 35666667778888888888888887743 34 5777888888888888888888888888877774 7778
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 381 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
..+..++...|++++|+..|++++++.|++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 888888888888888888888888888874
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=7.1e-07 Score=71.58 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHH
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACK 388 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~ 388 (580)
.+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|.+.+++.+...| +...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4444555555666666666666665542 122455556666666666666666666666665555 3556666666777
Q ss_pred hcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 389 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
..|++++|...++++++.+|+++..+..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777777666555555443
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.59 E-value=3.7e-07 Score=81.70 Aligned_cols=171 Identities=8% Similarity=-0.017 Sum_probs=105.8
Q ss_pred hhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 046803 249 INMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 325 (580)
+......|++++|.+.|+...+ .....|..+...+...|++++|+..|++..+. .|+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 3344445666666666553332 23445666677777777777777777777663 2221100000 000
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 326 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
.-. .. .....+..+..+|.+.|++++|+..+++.+...| +...|..+..++...|++++|+..+++++
T Consensus 81 ~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 00 0135677788889999999999999988887777 47889999999999999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHhcCChhHHH-HHHHHHHhC
Q 046803 405 SVEPENPGHYVMLSNIYALAGRMDRVE-VVRNIMIQK 440 (580)
Q Consensus 405 ~~~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m~~~ 440 (580)
++.|.++.++..+..++...|+.+++. ..+..|...
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999888887777 555555443
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=4.5e-07 Score=74.67 Aligned_cols=98 Identities=12% Similarity=0.073 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
+...+..+...+.+.|++++|.+.+++.+...| +..+|..+...+...|++++|+..++++++..|.++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 477888899999999999999999999998888 5888999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 046803 422 ALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~~ 440 (580)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=9.2e-07 Score=79.06 Aligned_cols=130 Identities=10% Similarity=-0.037 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC---CC-C----H
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFASMRQEY---GLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE---KP-A----P 377 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p-~----~ 377 (580)
.+..+...+...|++++|...+++..... +..| ....+..+...|...|++++|.+.+++.+.. .+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 34444444444555555555444443211 1111 1334555555666666666666666554422 12 1 2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCC--CC----cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEP--EN----PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.++..+...+...|++++|...++++++..+ .+ ..++..++.+|...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455666666666777777766666664321 11 12346677777777777777777776654
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.57 E-value=5.2e-07 Score=72.40 Aligned_cols=98 Identities=10% Similarity=0.117 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
....+..+...+...|++++|.+.+++.+...| +...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345677788999999999999999988887777 5888999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 046803 422 ALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~~ 440 (580)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999998764
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=5.3e-07 Score=73.90 Aligned_cols=111 Identities=7% Similarity=-0.044 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGAC 387 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~ 387 (580)
..+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.+++.+...|+ ...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34556666777788888888888877653 1234677788888888888888888888888877774 77788888888
Q ss_pred HhcCCchHHHHHHHHHHhcC------CCCcchHHHHHHHH
Q 046803 388 KMHKNFDLGVEVAEHLLSVE------PENPGHYVMLSNIY 421 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y 421 (580)
...|++++|+..++++++++ |.++.....+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888999999888888888 77666666555544
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=3.8e-07 Score=76.67 Aligned_cols=107 Identities=10% Similarity=-0.030 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGAC 387 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~ 387 (580)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|+..|++++...| ++..|..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34556667788889999999999888753 223577788888999999999999999988887777 477888899999
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
...|++++|+..+++++++.|+++......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 999999999999999999999877655443
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=4.4e-07 Score=79.44 Aligned_cols=128 Identities=5% Similarity=0.038 Sum_probs=95.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-HHHcCCH--
Q 046803 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL-FGRAGLL-- 360 (580)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 360 (580)
...|++++|+..+++..+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34567777888887777642 2355677777788888888888888888877532 2356677777877 7788888
Q ss_pred HHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 361 NEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 361 ~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
++|...+++.+...|+ ...|..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999888877774 77888888999999999999999999999999876543
No 153
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=2.5e-07 Score=86.15 Aligned_cols=135 Identities=15% Similarity=0.011 Sum_probs=86.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHH
Q 046803 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG--VEHHVCMVDLFG 355 (580)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~ 355 (580)
.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 3455666777777777777766653 344434444445677777888887777655321 1 121 234556777788
Q ss_pred HcCCHHHHHHHHHhHcCCC--CC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 356 RAGLLNEAYKFVKDVIGEK--PA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~~~--p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
+.|++++|++.|++...-. |. ...+.....++...|+.++|...|+++...+|+ +.....|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 8888888888886665222 43 345667777778888888888888888888876 5444433
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=7.4e-07 Score=76.93 Aligned_cols=110 Identities=8% Similarity=-0.045 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHH
Q 046803 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGA 386 (580)
Q Consensus 308 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~ 386 (580)
...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.|++.+...|+ ...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4566777778888899999999998887532 235778888999999999999999999888888885 8889999999
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCcchHHHHHH
Q 046803 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419 (580)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 419 (580)
+...|++++|+..|+++++++|+++..+.....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999999886655443
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=1.2e-06 Score=78.40 Aligned_cols=153 Identities=12% Similarity=0.003 Sum_probs=95.0
Q ss_pred hcCCHHHHHH---HHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHH
Q 046803 254 RCGNVSKARE---IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA----HGVRP-NNVTFVAVLSACAHAGLVQ 325 (580)
Q Consensus 254 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-d~~t~~~ll~a~~~~g~~~ 325 (580)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223445666667777777777777777776654 11122 2245666666777788888
Q ss_pred HHHHHHHHhHHhc---CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC---CCC----HHHHHHHHHHHHhcCCc
Q 046803 326 EGHRVFASMRQEY---GLLP--GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE---KPA----PAVWTAMLGACKMHKNF 393 (580)
Q Consensus 326 ~a~~~~~~~~~~~---~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~ll~~~~~~g~~ 393 (580)
+|...+++..+.. +..| ....+..+...+...|++++|.+.+++.+.. .++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 8887777765431 2111 1345667777788888888888888766521 112 23456777788888888
Q ss_pred hHHHHHHHHHHhc
Q 046803 394 DLGVEVAEHLLSV 406 (580)
Q Consensus 394 ~~a~~~~~~~~~~ 406 (580)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887754
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=7.1e-07 Score=72.38 Aligned_cols=97 Identities=18% Similarity=0.300 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
...+..+...+.+.|++++|.+.+++++...| +..+|..+...+...|++++|+..++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56778889999999999999999988886666 57889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 046803 423 LAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m~~~ 440 (580)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=1.3e-06 Score=73.39 Aligned_cols=110 Identities=14% Similarity=-0.018 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAM 383 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l 383 (580)
..+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|++.+++.+...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 4444555555555555555555555542 2333 45555666666677777777777766665555 35666677
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046803 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 384 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
..++...|++++|...++++++..|+++..+..+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 77777777777777777777777777666555554443
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=1.1e-06 Score=73.94 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 418 (580)
+...+..+...+...|++++|.+.|++.+...|+ ...|..+...+...|++++|+..++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5778888999999999999999999999998897 678899999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 046803 419 NIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 419 ~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999998764
No 159
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=2e-06 Score=80.13 Aligned_cols=181 Identities=9% Similarity=-0.041 Sum_probs=134.1
Q ss_pred hcCCHHHHHHHHHhccC---CChHHHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCCH---------------
Q 046803 254 RCGNVSKAREIFDMMSE---LNVIAWTAM-------ISGYGMHGYGTEAVELFHRMRAHGVRPNN--------------- 308 (580)
Q Consensus 254 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--------------- 308 (580)
..++.+.|.+.|.+..+ .....|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888888764 335677777 4555555555666665555443 22221
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----H
Q 046803 309 -------VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----P 377 (580)
Q Consensus 309 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~ 377 (580)
.....+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|++.... |+ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-PDKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-SCHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-CCcccHH
Confidence 2233456678889999999999998863 3464336666777899999999999999655443 33 2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVE--PE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.++..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 468889999999999999999999998543 44 4457788999999999999999999999874
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=1.8e-05 Score=75.78 Aligned_cols=179 Identities=12% Similarity=0.023 Sum_probs=99.7
Q ss_pred HHHHHHHHhccC---CChHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 046803 259 SKAREIFDMMSE---LNVIAWTAMISGYGMHG--YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL-VQEGHRVFA 332 (580)
Q Consensus 259 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~~ 332 (580)
+++..+++.+.. .+..+|+.-.-.+...| .+++++.++.++.+...+ |...|+.-.-.+...|. ++++.+.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 344444444432 34445554444444444 245555555555553222 33444444444444454 355555555
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhc-------
Q 046803 333 SMRQEYGLLPGVEHHVCMVDLFGRA--------------GLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMH------- 390 (580)
Q Consensus 333 ~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~------- 390 (580)
.+.+.. +.+...|+....++.+. +.++++++.+.+++...| |...|+.+-..+...
T Consensus 170 ~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 555421 12344444444443333 457788888878877777 577777665555544
Q ss_pred ----CCchHHHHHHHHHHhcCCCCcchHHHHHHHHH---hcCChhHHHHHHHHHHhC
Q 046803 391 ----KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA---LAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 391 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~---~~g~~~~a~~~~~~m~~~ 440 (580)
+.++++++.++++++.+|++.-.+..++.... ..|..+++...+.++++.
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45678888888888888887554444433222 356677777788777763
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.52 E-value=9e-07 Score=76.20 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCC------------------CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGE------------------KPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 406 (580)
.+......+.+.|++++|++.|++++.. .|. ...|..+..++.+.|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555566666666666666555543 332 456788888888888888888888888888
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 407 EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 407 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+|.++.+|..++.+|...|++++|...+++..+.
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 8888888888888888888888888888887663
No 162
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=2.7e-06 Score=73.13 Aligned_cols=130 Identities=11% Similarity=-0.035 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 3456677778888888888888888887742 225667777888888889999999988888753 2335777888888
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCC-CHHHHHH--HHHHHHhcCCchHHHHHHHHHHh
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKP-APAVWTA--MLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
.+.+.|++++|.+.+++.+...| +...+.. ++..+...|++++|+..+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 89999999999999988876666 3555533 33447778889999888887654
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.51 E-value=4.7e-07 Score=76.19 Aligned_cols=94 Identities=12% Similarity=0.026 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-------------HHHHHHHHHHHHhcCCchHHHHHHHHHHhc-------
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-------------PAVWTAMLGACKMHKNFDLGVEVAEHLLSV------- 406 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------- 406 (580)
+......+...|++++|++.|++++...|+ ...|..+..++...|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344556666777777777777777655544 237888888888888888888888888888
Q ss_pred CCCCcchH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 407 EPENPGHY----VMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 407 ~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+|+++..| ...+.++...|++++|...|++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888 88888888888888888888887653
No 164
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=1e-06 Score=83.71 Aligned_cols=191 Identities=10% Similarity=-0.060 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHH
Q 046803 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGY 283 (580)
Q Consensus 207 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 283 (580)
...+..+...+...|++++|...+..+++.. +.+...+..+..+|.+.|++++|...|++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555556666666666666666666553 44566677777777777777777777776654 3456777778888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 046803 284 GMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362 (580)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 362 (580)
...|++++|+..|++..+. .|+. ..+...+..... ..++... ..... .....+......+... ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~-~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRW-NSIEE-RRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHH-HHHHH-TCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHH-HHHHH-HHHhhhHHHHHHHHHH--HHHHHHH
Confidence 8888888888888877653 2221 011111111111 1111111 11222 2344454444444443 3689999
Q ss_pred HHHHHHhHcCCCCCHH-HHHHHHHHHHhc-CCchHHHHHHHHHHhcC
Q 046803 363 AYKFVKDVIGEKPAPA-VWTAMLGACKMH-KNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 363 A~~~~~~~~~~~p~~~-~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~ 407 (580)
|++.+++++...|+.. ....+...+... +.+++|.++|+++.+..
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999988888888643 344444445554 67888999999887643
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.48 E-value=1.3e-06 Score=89.20 Aligned_cols=145 Identities=12% Similarity=0.033 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
...|..+...|.+.|++++|+..|++.++. .|+...+ .-+...+ ... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHHH-HHH--------HHHHHHHHHHH
Confidence 345666666677777777777777766652 1221100 0000000 000 11467888999
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 431 (580)
+|.+.|++++|+..+++++...| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.+.|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888 48889999999999999999999999999999999999999999999999998887
Q ss_pred H-HHHHHHh
Q 046803 432 V-VRNIMIQ 439 (580)
Q Consensus 432 ~-~~~~m~~ 439 (580)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 5 4555543
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.45 E-value=7.8e-05 Score=71.80 Aligned_cols=157 Identities=10% Similarity=-0.059 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 046803 143 VQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNG-FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218 (580)
Q Consensus 143 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 218 (580)
+++.+-....+.+..++|+++++.+.. .+..+|+.--..+...| .+++++++++.+.... +-+...|+.-...+.
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 344444445556666789999998865 35678888888888888 5999999999999863 335567777666666
Q ss_pred hC-C-ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHH--------HHHHHHHhccC---CChHHHHHHHHHHHh
Q 046803 219 QL-G-DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS--------KAREIFDMMSE---LNVIAWTAMISGYGM 285 (580)
Q Consensus 219 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~--------~A~~~~~~~~~---~~~~~~~~li~~~~~ 285 (580)
.. + +++++.++++.+++.. +.+..+|+--..++.+.|.++ ++.+.++++.+ .|..+|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 65 6 7788888888888765 556666665554444444444 55555555543 345566655555555
Q ss_pred cCC-------hHHHHHHHHHHHh
Q 046803 286 HGY-------GTEAVELFHRMRA 301 (580)
Q Consensus 286 ~g~-------~~~A~~~~~~m~~ 301 (580)
.+. ++++++.+++++.
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~ 236 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIH 236 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHH
Confidence 544 3455555555554
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.45 E-value=1.4e-06 Score=72.37 Aligned_cols=101 Identities=5% Similarity=-0.123 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHH
Q 046803 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLG 385 (580)
Q Consensus 307 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~ 385 (580)
+...+..+...+...|++++|...|+..... .+.+...+..+..+|...|++++|...+++.+...|+ ...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4567777777888888888888888887653 1234677888888888889999998888888777774 778888888
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCC
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
++...|++++|+..+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 899999999999999999888776
No 168
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.45 E-value=4.5e-06 Score=68.14 Aligned_cols=118 Identities=11% Similarity=-0.095 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+. .+.+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHH
Confidence 4566677777888888888888888877642 225567777777888888888888888888753 2234677778888
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCc
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNF 393 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~ 393 (580)
.+.+.|++++|.+.+++.+...| +...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888999999988887777666 467777777777777765
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.44 E-value=3.9e-05 Score=73.52 Aligned_cols=193 Identities=10% Similarity=0.023 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcC--CHHHHHHHHHhccC---CChHHHHHHHHHHHhcCC-hHHHHHHH
Q 046803 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG--NVSKAREIFDMMSE---LNVIAWTAMISGYGMHGY-GTEAVELF 296 (580)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 296 (580)
++++..+++.+.... |.+..+|+.-..++.+.| .++++.++++.+.+ +|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456667777777654 556667766666666666 47778887777764 566777777666677777 47888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc----
Q 046803 297 HRMRAHGVRPNNVTFVAVLSACAHA--------------GLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRA---- 357 (580)
Q Consensus 297 ~~m~~~g~~pd~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---- 357 (580)
.++++..+. |...|+.....+.+. +.++++.+.+...... .| |...|+-+--.+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 888775433 555565555544443 3467788888777643 34 466665454444444
Q ss_pred -------CCHHHHHHHHHhHcCCCCCHHHHHHHHHH-----HHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046803 358 -------GLLNEAYKFVKDVIGEKPAPAVWTAMLGA-----CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 358 -------g~~~~A~~~~~~~~~~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
+.++++++.+++.+...||. .|..+..+ ....+..++....+.++.+++|...+-|..|..-+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 46889999998888888874 44432222 22457778999999999999999777776665443
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.44 E-value=1.1e-06 Score=90.24 Aligned_cols=86 Identities=13% Similarity=0.036 Sum_probs=40.8
Q ss_pred HhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 046803 248 LINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGL 323 (580)
Q Consensus 248 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~ 323 (580)
+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|+..+++..+. .| +...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 34445555555555555554432 23444555555555555555555555555442 22 22344444444444445
Q ss_pred HHHHHHHHHHhH
Q 046803 324 VQEGHRVFASMR 335 (580)
Q Consensus 324 ~~~a~~~~~~~~ 335 (580)
+++|.+.|+++.
T Consensus 90 ~~eA~~~~~~al 101 (477)
T 1wao_1 90 FRAALRDYETVV 101 (477)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555544444444
No 171
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=2.1e-06 Score=83.76 Aligned_cols=130 Identities=6% Similarity=-0.105 Sum_probs=106.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN----------------NVTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
+...|..+...|.+.|++++|+..|++..+. .|+ ...+..+..++.+.|++++|...|+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3457777888888888888888888888874 333 3788888889999999999999999988
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHH-HHHHHHHHh
Q 046803 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLG-VEVAEHLLS 405 (580)
Q Consensus 336 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 405 (580)
+. .+.+...|..+..+|...|++++|++.|++++...| +..++..+..++...|+.++| ...++++++
T Consensus 224 ~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 224 EL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 223578888999999999999999999998888888 478899999999999999988 456776654
No 172
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=7.7e-07 Score=79.57 Aligned_cols=163 Identities=7% Similarity=-0.067 Sum_probs=81.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C-ChHHHHHHHHHHHhcCCh
Q 046803 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L-NVIAWTAMISGYGMHGYG 289 (580)
Q Consensus 213 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 289 (580)
........|.++.+.+.+....+.. ......+..+...|.+.|++++|...|++..+ | +. .|... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-EWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-TCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc-ccchh--------hH
Confidence 3344455677777776665433221 22455677888899999999999999998763 1 21 00000 00
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 046803 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369 (580)
Q Consensus 290 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 369 (580)
..- -..+ ....+..+..+|...|++++|...++...+. .+.+...+..+..+|...|++++|.+.|++
T Consensus 80 ~~~---~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 80 LDK---KKNI-------EISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHH---HHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHH---HHHH-------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 000 0000 1233444555555566666666666555532 122355555666666666666666666666
Q ss_pred HcCCCC-CHHHHHHHHHHHHhcCCchHHH
Q 046803 370 VIGEKP-APAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 370 ~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
.+...| +..++..+...+...++.+++.
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 655555 3555555555555555554444
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.40 E-value=2.9e-07 Score=74.49 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=57.7
Q ss_pred HcCCHHHHHHHHHhHcCC---CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 046803 356 RAGLLNEAYKFVKDVIGE---KPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 431 (580)
..|++++|++.|++.+.. .|+ ...|..+..++...|++++|+..++++++.+|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356677777777776666 343 5567777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHh
Q 046803 432 VVRNIMIQ 439 (580)
Q Consensus 432 ~~~~~m~~ 439 (580)
+.+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777655
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.39 E-value=2.6e-06 Score=67.45 Aligned_cols=101 Identities=13% Similarity=-0.055 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---HHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA---PAVWTAMLG 385 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~ll~ 385 (580)
..+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|.+.+++.+...|+ ...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34555666677778888888887777653 1234667777888888888888888888777766664 677888888
Q ss_pred HHHhc-CCchHHHHHHHHHHhcCCCCc
Q 046803 386 ACKMH-KNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 386 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 411 (580)
.+... |++++|++.++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88899 999999999999998888754
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.38 E-value=1.8e-06 Score=70.24 Aligned_cols=98 Identities=13% Similarity=-0.005 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHH
Q 046803 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACK 388 (580)
Q Consensus 311 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~ 388 (580)
+..+...+.+.|++++|...|+.+.+. .| +...|..+..++.+.|++++|+..|++++...| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444556777888888888888888753 34 577777888888888999999998888887777 4778888888888
Q ss_pred hcCCchHHHHHHHHHHhcCCCCc
Q 046803 389 MHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 389 ~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
..|++++|+..++++++.+|.++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 89999999999999988888753
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.36 E-value=1.7e-06 Score=70.91 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=63.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCCC-H---HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC---cchHHHHHHHHH
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKPA-P---AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN---PGHYVMLSNIYA 422 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~ 422 (580)
+...+.+.|++++|.+.|++.+...|+ . ..+..+..++...|++++|+..++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 455566777777777777666654443 2 466667777777777777777777777777776 556777777777
Q ss_pred hcCChhHHHHHHHHHHhC
Q 046803 423 LAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m~~~ 440 (580)
..|++++|.+.++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777777653
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.35 E-value=1.2e-06 Score=73.68 Aligned_cols=74 Identities=9% Similarity=0.040 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCC-------CCC-HHHH----HHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGE-------KPA-PAVW----TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
.|..+..++.+.|++++|+..+++++.. .|+ ...| .....++...|++++|+..|++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777788888888888888888777766 996 6778 999999999999999999999999999998876
Q ss_pred HHHHHH
Q 046803 414 YVMLSN 419 (580)
Q Consensus 414 ~~~l~~ 419 (580)
+..+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 655433
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.35 E-value=2e-06 Score=70.31 Aligned_cols=107 Identities=5% Similarity=0.003 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC----C----HHHHHH
Q 046803 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP----A----PAVWTA 382 (580)
Q Consensus 311 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p----~----~~~~~~ 382 (580)
+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...+++.+...| + ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 334444444555555555555554432 112344444555555555555555555544443222 1 445556
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 383 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
+..++...|++++|...++++++..| ++.....+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 66666666666666666666666655 34444444443
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=1.6e-06 Score=70.90 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-------cchHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN-------PGHYV 415 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 415 (580)
...+..+...+...|++++|...+++.+...| +...+..+...+...|++++|...++++++..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45677788999999999999999988887777 58889999999999999999999999999988776 77899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 416 MLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 416 ~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998763
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.33 E-value=1e-05 Score=66.32 Aligned_cols=103 Identities=9% Similarity=-0.035 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC-CCCC----HHHHH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYG-LLPG----VEHHV 348 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~----~~~~~ 348 (580)
++..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|.+.++...+... ..++ ...|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4445555555566666666666655552 232 34455555555555666665555555543210 0011 12344
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHcCCCCCHHH
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 379 (580)
.+...+...|++++|++.|++.+...||+.+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence 4455555555555555555555444444433
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.33 E-value=3.3e-06 Score=83.44 Aligned_cols=138 Identities=9% Similarity=0.014 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVD 352 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 352 (580)
..|..+...+.+.|++++|+..|++.++. .|+.. .....+++ . ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~-------~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG-------A---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH-------G---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH-------H---HHHHHHHHHHHHHHH
Confidence 45666777777777777777777776652 11100 00011111 0 1223 3677888999
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 431 (580)
+|.+.|++++|++.+++++...|+ ...|..+..++...|++++|+..+++++++.|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998884 8889999999999999999999999999999999999999999999988888776
Q ss_pred HH
Q 046803 432 VV 433 (580)
Q Consensus 432 ~~ 433 (580)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.31 E-value=2.8e-06 Score=72.40 Aligned_cols=94 Identities=10% Similarity=0.112 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCC---CC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC------CCcc
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEK---PA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP------ENPG 412 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 412 (580)
.+..+...+...|++++|.+.+++.+... ++ ..++..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44445555555666666666555444111 11 33455666666777777777777777665421 1234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 413 HYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566788888888888888888877654
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.29 E-value=2.2e-06 Score=73.76 Aligned_cols=77 Identities=16% Similarity=0.048 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc-chHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP-GHYVMLSNI 420 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 420 (580)
...|..+..+|.+.|++++|+..+++++...|+ +..|..+..++...|++++|+..++++++++|+++ .....|..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 567888899999999999999999888888884 88899999999999999999999999999999987 444444443
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.28 E-value=1.2e-05 Score=65.69 Aligned_cols=104 Identities=10% Similarity=-0.002 Sum_probs=71.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHH
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACK 388 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~ 388 (580)
+...+...|++++|...|+.+.+...-.+. ...+..+...+.+.|++++|.+.|++.+...|+ +..+..+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444566777777777777777653221111 145666777788888888888888777655553 566777788888
Q ss_pred hcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 389 MHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 389 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
..|++++|...++++++..|+++......
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 88888888888888888888765544333
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.26 E-value=1.1e-06 Score=70.89 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=69.6
Q ss_pred cCCHHHHHHHHHHhHHhcCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHH
Q 046803 321 AGLVQEGHRVFASMRQEYGL-LP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~ 397 (580)
.|++++|...|++..+. +. .| +...+..+..+|.+.|++++|++.|++.+...|+ ..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 56777788888777632 10 23 3667778888888888888888888888877774 777888888888899999999
Q ss_pred HHHHHHHhcCCCCcchHH
Q 046803 398 EVAEHLLSVEPENPGHYV 415 (580)
Q Consensus 398 ~~~~~~~~~~p~~~~~~~ 415 (580)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999888888765543
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.24 E-value=1.1e-06 Score=85.93 Aligned_cols=149 Identities=10% Similarity=-0.028 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 456778888888999999999999998873 455432 22233334433222 1 136777889
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHH-HhcCChhHH
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY-ALAGRMDRV 430 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~~a 430 (580)
+|.+.|++++|+..+++++...| +...|..+..++...|++++|+..|+++++++|+++.++..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888778 5888999999999999999999999999999999999998888884 456677888
Q ss_pred HHHHHHHHhCC
Q 046803 431 EVVRNIMIQKG 441 (580)
Q Consensus 431 ~~~~~~m~~~~ 441 (580)
.+.+++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888876543
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.21 E-value=1.7e-05 Score=80.92 Aligned_cols=125 Identities=9% Similarity=0.017 Sum_probs=99.3
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcC--C---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHc--------CCCCC-HHHHH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYG--L---LPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVI--------GEKPA-PAVWT 381 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~--~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~p~-~~~~~ 381 (580)
.+...|++++|..++++..+... + .|+ ..+++.|..+|...|++++|+.++++++ +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578899999888887765421 1 122 5678889999999999999999987776 34455 56699
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh-----cCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLS-----VEPENPGH---YVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
.|...|...|++++|+.+++++++ ++|+.|.+ ...|..++...|++++|+.++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 56776654 4578888999999999999999998754
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.20 E-value=1.4e-05 Score=67.79 Aligned_cols=133 Identities=11% Similarity=0.036 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVR-PN----NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VE 345 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 345 (580)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555554431100 11 124455555666666666666666665432111111 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCC---CCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGE---KPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
.+..+...+...|++++|.+.+++.+.. .++ ..++..+...+...|++++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5556667777777777777777665521 111 3456677777888888888888888877643
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=2.6e-06 Score=67.65 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------cchHH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN------PGHYV 415 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 415 (580)
+...+..+...+.+.|++++|++.|++.+...| +...|..+..++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 456677788889999999999999988887777 57889999999999999999999999999999988 66777
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 046803 416 MLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 416 ~l~~~y~~~g~~~~a~~~~~ 435 (580)
.++.++...|+.++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888877766655443
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.19 E-value=4.3e-06 Score=81.61 Aligned_cols=153 Identities=8% Similarity=-0.025 Sum_probs=84.8
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 321 (580)
...+..+...|.+.|++++|...|++..+.+.... .+...|+.+++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888999999999999999998764221111 1223344444433221 13677888889999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHH-HHhcCCchHHHHH
Q 046803 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGA-CKMHKNFDLGVEV 399 (580)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~-~~~~g~~~~a~~~ 399 (580)
|++++|...++...+. .+.+...|..+..+|...|++++|.+.|++++...|+ ...+..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998753 2235788889999999999999999999888888885 5566666655 3455678888999
Q ss_pred HHHHHhcCCCCc
Q 046803 400 AEHLLSVEPENP 411 (580)
Q Consensus 400 ~~~~~~~~p~~~ 411 (580)
|.++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888764
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=0.0001 Score=74.45 Aligned_cols=156 Identities=9% Similarity=-0.022 Sum_probs=74.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCh----------------hHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCC
Q 046803 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDS----------------TTCVCVLAACAQLGDIDLGRWVHEFIVGQ--GLDV 240 (580)
Q Consensus 179 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~ 240 (580)
...+.+.|++++|++.|.+..+....... ..+..+...|...|++++|.+.+..+.+. .+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567788899999988888775322111 12445555566666666666655554432 1110
Q ss_pred c---HHHhhHHhhHhhhcCCHHHHHHHHHhccC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CC--
Q 046803 241 N---VVLATSLINMYARCGNVSKAREIFDMMSE-----L----NVIAWTAMISGYGMHGYGTEAVELFHRMRAH--GV-- 304 (580)
Q Consensus 241 ~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 304 (580)
. ..+.+.+...+...|+++.|..++..... . -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 0 11223333344444555555555544321 0 0223444455555555555555555544321 11
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 305 RPN-NVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 305 ~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
.|. ..++..++..|...|++++|..+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 111 123444444455555555555555444
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.18 E-value=5.8e-05 Score=78.86 Aligned_cols=170 Identities=8% Similarity=-0.042 Sum_probs=133.2
Q ss_pred CHHHHHHHHHhccC---CChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 046803 257 NVSKAREIFDMMSE---LNVIAWTAMISGYGMHGY----------GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG- 322 (580)
Q Consensus 257 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g- 322 (580)
.-++|.+.++.+.+ .+..+|+.--..+...|+ ++++++.++++.+...+ +..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34566777776664 345567766666666666 88999999999885333 5567777777778888
Q ss_pred -CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhc---------
Q 046803 323 -LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG-LLNEAYKFVKDVIGEKP-APAVWTAMLGACKMH--------- 390 (580)
Q Consensus 323 -~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~--------- 390 (580)
+++++.+.++++.+. -+-+...|+.-.-++.+.| .++++++.+++++...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999864 2236777877777788888 89999999989999888 588898888777663
Q ss_pred -----CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 046803 391 -----KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 391 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 429 (580)
+.++++++.+.+++..+|++..+|..+..++.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999888554
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=5.5e-05 Score=76.42 Aligned_cols=186 Identities=10% Similarity=-0.024 Sum_probs=125.3
Q ss_pred HHHHHhCCCHHHHHHHHccCCCC-----C---------------hhHHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCC
Q 046803 148 VNFYAKSNNVDVARKVFDRMPDK-----S---------------VVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVNPD 206 (580)
Q Consensus 148 i~~y~~~g~~~~A~~~f~~~~~~-----~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~ 206 (580)
...+.+.|++++|.+.|.++.+. + ..++..+...|...|++++|.+.+.++... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567889999999999876431 1 124778899999999999999999888653 11222
Q ss_pred hhH----HHHHHHHHHhCCChHHHHHHHHHHHHc----CCC-CcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-------
Q 046803 207 STT----CVCVLAACAQLGDIDLGRWVHEFIVGQ----GLD-VNVVLATSLINMYARCGNVSKAREIFDMMSE------- 270 (580)
Q Consensus 207 ~~t----~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------- 270 (580)
..+ .+.+-..+...|+.+.+..++...... +.. .-..++..|...|...|++++|..++.+...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 222 222333344568899999998877643 222 2356778899999999999999999887642
Q ss_pred -C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046803 271 -L-NVIAWTAMISGYGMHGYGTEAVELFHRMRAH--GVR-P-N--NVTFVAVLSACAHAGLVQEGHRVFAS 333 (580)
Q Consensus 271 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-d--~~t~~~ll~a~~~~g~~~~a~~~~~~ 333 (580)
+ .+..|..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...|..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1 2457888899999999999999999887641 111 1 1 12333334444555566655555544
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.17 E-value=1.2e-05 Score=79.54 Aligned_cols=68 Identities=10% Similarity=0.019 Sum_probs=62.7
Q ss_pred CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 373 EKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 373 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..| +..+|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 444 36789999999999999999999999999999999999999999999999999999999998764
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.16 E-value=8.2e-06 Score=61.94 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
...+..+...+.+.|++++|.+.+++.+...| +..+|..+...+...|++++|+..++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 56677788889999999999999988887777 47788999999999999999999999999999999999999988887
Q ss_pred hcC
Q 046803 423 LAG 425 (580)
Q Consensus 423 ~~g 425 (580)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.12 E-value=1.3e-05 Score=81.72 Aligned_cols=98 Identities=8% Similarity=0.027 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----------------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----------------PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
...+..+...|.+.|++++|+..|++++...|+ ...|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 344555666666777777777777666644443 5789999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 408 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
|+++.+|..++.+|...|++++|...+++..+..
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998753
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.11 E-value=1.2e-05 Score=64.42 Aligned_cols=79 Identities=9% Similarity=0.079 Sum_probs=68.6
Q ss_pred HHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 362 EAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 362 ~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+|++.|++.+...| +...|..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777777777777 47888889999999999999999999999999999999999999999999999999999988663
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.10 E-value=2.6e-06 Score=71.52 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=75.0
Q ss_pred HHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCc----------hHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046803 355 GRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNF----------DLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423 (580)
Q Consensus 355 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 423 (580)
.|.+++++|.+.+++++...| ++..|..+..++...+++ ++|+..|+++++++|+++.+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 356778889988888888888 578888888888877765 599999999999999999999999999998
Q ss_pred cC-----------ChhHHHHHHHHHHhCC
Q 046803 424 AG-----------RMDRVEVVRNIMIQKG 441 (580)
Q Consensus 424 ~g-----------~~~~a~~~~~~m~~~~ 441 (580)
.| ++++|.+.|++..+.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999998754
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.96 E-value=3.1e-05 Score=60.24 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=58.8
Q ss_pred CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 374 KP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 374 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.| ++..|..+...+...|++++|+..|+++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35 57788899999999999999999999999999999999999999999999999999999987653
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.88 E-value=1.3e-05 Score=67.23 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=67.0
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHhHcCCCCC-HHHHHHHHHHHH
Q 046803 321 AGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGL----------LNEAYKFVKDVIGEKPA-PAVWTAMLGACK 388 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~ 388 (580)
.+.+++|.+.++...+. .| +...|..+..++...++ +++|+..|++++.+.|+ ..+|..+..+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34556666666666542 23 46666666666666655 46999999999988885 788999999998
Q ss_pred hcC-----------CchHHHHHHHHHHhcCCCCc
Q 046803 389 MHK-----------NFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 389 ~~g-----------~~~~a~~~~~~~~~~~p~~~ 411 (580)
..| ++++|+..|+++++++|++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 774 89999999999999999974
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.80 E-value=0.0002 Score=72.94 Aligned_cols=124 Identities=9% Similarity=-0.070 Sum_probs=93.7
Q ss_pred HHHhcCChHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHh----cCC-CCC-HHHHH
Q 046803 282 GYGMHGYGTEAVELFHRMRAH---GVRPN----NVTFVAVLSACAHAGLVQEGHRVFASMRQE----YGL-LPG-VEHHV 348 (580)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~---g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~-~p~-~~~~~ 348 (580)
.+..+|++++|+.++++.++. -+-|+ ..+++.|..+|...|++++|..++++..+- +|- .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999887642 12233 247888888999999999999988887642 222 233 66788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHc--------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVI--------GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
.|..+|...|++++|+.++++++ +..|+ ..+...|..++...+.+++|+..|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877 23344 34456677778889999999999998865
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.71 E-value=0.00014 Score=73.06 Aligned_cols=117 Identities=9% Similarity=0.087 Sum_probs=88.1
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCC--------CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh-----cCCCCc---ch
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGE--------KPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLS-----VEPENP---GH 413 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 413 (580)
+.-+.+.|++++|++++++.+.. .|+ ..+++.|..+|...|++++|+.+++++++ ++|++| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466788999999998777622 232 45688999999999999999999999875 445554 46
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 046803 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485 (580)
Q Consensus 414 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 485 (580)
++.|+.+|..+|++++|..++++..+--.. .-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999987652110 112369999999888888777665
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.69 E-value=0.00014 Score=58.07 Aligned_cols=81 Identities=7% Similarity=0.046 Sum_probs=60.3
Q ss_pred HHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 326 EGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 326 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
+|...|+...+ ..| +...+..+...|.+.|++++|+..|++.+...|+ ...|..+..++...|++++|...++++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556666653 234 4667777888888888888888888777766664 677888888888888888888888888
Q ss_pred HhcCCC
Q 046803 404 LSVEPE 409 (580)
Q Consensus 404 ~~~~p~ 409 (580)
+++.|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 877664
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.65 E-value=0.0013 Score=68.55 Aligned_cols=182 Identities=12% Similarity=-0.009 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCC----------HHHHHHHHHhccC---CChHHHHHHHHHHHhcC--C
Q 046803 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN----------VSKAREIFDMMSE---LNVIAWTAMISGYGMHG--Y 288 (580)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~ 288 (580)
++|.+.++.+++.+ +.+..+|+.--.++.+.|+ ++++.+.++.+.+ ++..+|+.-.-.+.+.| +
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 34455555555543 3344444444444444444 6666666666653 45566666666666667 5
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc---------
Q 046803 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG-LVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRA--------- 357 (580)
Q Consensus 289 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------- 357 (580)
++++++.++++.+...+ |...|..-..++.+.| .++++.+.++++.+ ..| +...|+....++.+.
T Consensus 125 ~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 125 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred HHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHHHHhhccccccccc
Confidence 57777777777775333 5556666666666667 67777777777763 233 456666655555542
Q ss_pred -----CCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchH------------HHHHHHHHHhcCCCC
Q 046803 358 -----GLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDL------------GVEVAEHLLSVEPEN 410 (580)
Q Consensus 358 -----g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~------------a~~~~~~~~~~~p~~ 410 (580)
+.+++|++.+++++...| |...|..+...+.+.+..++ |+..|.+.++++|..
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 568999999999998888 58889999888888887655 444455666666653
No 205
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.64 E-value=0.00031 Score=53.48 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHhcCC---chHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 375 PAPAVWTAMLGACKMHKN---FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 375 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
+|+..+..+..++...++ .++|..+++++++.+|+++.+...++..+...|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 367788888888765555 79999999999999999999999999999999999999999999987643
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=7.1e-05 Score=59.03 Aligned_cols=92 Identities=8% Similarity=-0.051 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-------HHHH
Q 046803 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-------PAVW 380 (580)
Q Consensus 308 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~ 380 (580)
...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|++.+++.+...|+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 345555666666777777777777766642 1224566666777777777777777777777766664 4455
Q ss_pred HHHHHHHHhcCCchHHHHHHH
Q 046803 381 TAMLGACKMHKNFDLGVEVAE 401 (580)
Q Consensus 381 ~~ll~~~~~~g~~~~a~~~~~ 401 (580)
..+..++...|+.+.|...++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 556666666666665544433
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.50 E-value=0.00016 Score=56.11 Aligned_cols=67 Identities=7% Similarity=0.063 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
+...+..+...|.+.|++++|++.|++.+...|+ ...|..+..+|...|++++|+..+++++++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4667777888888888888888888878777774 677888888888888888888888888876553
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.49 E-value=0.00046 Score=53.04 Aligned_cols=65 Identities=11% Similarity=0.252 Sum_probs=53.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCCC-HH-HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKPA-PA-VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
....+.+.|++++|.+.+++.+...|+ .. .|..+..++...|++++|+..|+++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 456677888999999999888777774 66 888888888899999999999999999999887766
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.46 E-value=0.00072 Score=67.69 Aligned_cols=93 Identities=9% Similarity=-0.005 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCC---C-HHHHHHHHHHHHHcCCHHHHHHHHHhHc--------CCCCC-HHHHHHHHH
Q 046803 321 AGLVQEGHRVFASMRQEYG--LLP---G-VEHHVCMVDLFGRAGLLNEAYKFVKDVI--------GEKPA-PAVWTAMLG 385 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~--~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~p~-~~~~~~ll~ 385 (580)
.|++++|..++++..+... +.| + ..+++.|..+|...|++++|+.++++++ +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4667777777766654311 112 2 4567777777777788877777776665 33454 455778888
Q ss_pred HHHhcCCchHHHHHHHHHHh-----cCCCCcch
Q 046803 386 ACKMHKNFDLGVEVAEHLLS-----VEPENPGH 413 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 413 (580)
.|...|++++|+.+++++++ ++|++|.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 88888888888888888764 45665543
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.46 E-value=0.0019 Score=53.37 Aligned_cols=89 Identities=3% Similarity=-0.052 Sum_probs=45.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHh--
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM----HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL-- 423 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-- 423 (580)
|..+|...+.+++|.+.|+++... -++..+..|...|.. .+++++|...|+++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGK 107 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCC
Confidence 444444444444455555443322 234444444444444 45555555555555544 234555566666665
Q ss_pred --cCChhHHHHHHHHHHhCC
Q 046803 424 --AGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 424 --~g~~~~a~~~~~~m~~~~ 441 (580)
.+++++|.+.+++..+.|
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 566666666666655544
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.43 E-value=0.0002 Score=71.81 Aligned_cols=84 Identities=8% Similarity=0.078 Sum_probs=69.9
Q ss_pred HcCCHHHHHHHHHhHc--------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh-----cCCCCc---chHHHHH
Q 046803 356 RAGLLNEAYKFVKDVI--------GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLS-----VEPENP---GHYVMLS 418 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 418 (580)
..|++++|+.++++.+ +..|+ ..+++.|..+|...|++++|+.+++++++ ++|++| .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578999999997766 23344 56799999999999999999999999885 455554 5688899
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 046803 419 NIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 419 ~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.39 E-value=0.0054 Score=58.99 Aligned_cols=139 Identities=10% Similarity=-0.061 Sum_probs=83.5
Q ss_pred CChHHHHHHHHHHH--hcCC---hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cC--C---HHHHHHHHHHhHH
Q 046803 271 LNVIAWTAMISGYG--MHGY---GTEAVELFHRMRAHGVRPNN-VTFVAVLSACAH---AG--L---VQEGHRVFASMRQ 336 (580)
Q Consensus 271 ~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~---~g--~---~~~a~~~~~~~~~ 336 (580)
.+..+|...+.+.. ..+. ..+|..+|++.++ ..|+. ..+..+.-+|.. .+ . .......+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46667777666543 2333 4688888888887 46664 333333333321 01 1 1111111111111
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 337 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
....+.+...|..+...+...|++++|...+++++...|+...|..+...+...|++++|.+.+++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 112234566777776666667888888888877776677777777777777888888888888888888887643
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.39 E-value=0.00094 Score=55.29 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=73.3
Q ss_pred HHHHHHHHHhHcCC-CCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCChhHHHHH
Q 046803 360 LNEAYKFVKDVIGE-KPAPAVWTAMLGACKMHK---NFDLGVEVAEHLLSVE-P-ENPGHYVMLSNIYALAGRMDRVEVV 433 (580)
Q Consensus 360 ~~~A~~~~~~~~~~-~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~ 433 (580)
+..+.+.|.+.... .++..+...+..++.+.+ +.++++.+++++++.+ | .+...+..|+.+|.+.|++++|.+.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34455555444432 246777777777777777 6668888888888877 6 4567788888888888888888888
Q ss_pred HHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccC
Q 046803 434 RNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVP 491 (580)
Q Consensus 434 ~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 491 (580)
++.+.+. .|+..++......+.+.+++.|++-
T Consensus 94 ~~~lL~i--------------------------eP~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 94 VRGLLQT--------------------------EPQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp HHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhc--------------------------CCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 8888763 3555556665566666777777654
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.38 E-value=0.0016 Score=65.25 Aligned_cols=101 Identities=12% Similarity=0.014 Sum_probs=74.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcC--CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhHc--------CCCCC-HHH
Q 046803 315 LSACAHAGLVQEGHRVFASMRQEYG--LLPG----VEHHVCMVDLFGRAGLLNEAYKFVKDVI--------GEKPA-PAV 379 (580)
Q Consensus 315 l~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~p~-~~~ 379 (580)
+..+.+.|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++++ +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4445667888888888887764311 2222 5677888888888899988888887666 34454 556
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh-----cCCCCcchHH
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLS-----VEPENPGHYV 415 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 415 (580)
++.|...|...|++++|+.+++++++ ++|++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88999999999999999999999875 5687765544
No 215
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.36 E-value=0.00068 Score=50.89 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 377 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
...|..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5678889999999999999999999999999999999999999999999999999999998764
No 216
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.34 E-value=0.0029 Score=52.19 Aligned_cols=108 Identities=9% Similarity=-0.093 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh----cCCHHHHH
Q 046803 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR----CGNVSKAR 262 (580)
Q Consensus 187 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~ 262 (580)
++++|++.|++..+.| .|+.. +...+...+.+++|.+++....+.| +...+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555544 22222 3333444444555555555555443 33344444444444 44444444
Q ss_pred HHHHhccC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHhC
Q 046803 263 EIFDMMSE-LNVIAWTAMISGYGM----HGYGTEAVELFHRMRAH 302 (580)
Q Consensus 263 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 302 (580)
+.|++..+ .+..++..|...|.. .++.++|+.+|++..+.
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 44444332 233344444444444 34444444444444443
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.04 E-value=0.0036 Score=47.47 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 342 PGVEHHVCMVDLFGRAGL---LNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
.+...+..+..++...++ .++|..++++++...|+ +..+..+...+...|++++|+..|+++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 467777788888865555 79999999999988885 7888888999999999999999999999999884
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.00 E-value=0.0022 Score=59.11 Aligned_cols=88 Identities=11% Similarity=0.154 Sum_probs=74.2
Q ss_pred HHHHHHHHHhHcCCCCC---HHHHHHHHHHHHh-----cCCchHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CChhH
Q 046803 360 LNEAYKFVKDVIGEKPA---PAVWTAMLGACKM-----HKNFDLGVEVAEHLLSVEPEN-PGHYVMLSNIYALA-GRMDR 429 (580)
Q Consensus 360 ~~~A~~~~~~~~~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~ 429 (580)
..+|...+++++.+.|+ ...|..|...|.+ -|+.++|.+.|+++++++|+. ..+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 56788888888888887 5678889988888 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 046803 430 VEVVRNIMIQKGLKKHVG 447 (580)
Q Consensus 430 a~~~~~~m~~~~~~~~~~ 447 (580)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876553343
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.94 E-value=0.0018 Score=49.54 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=54.4
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPG-HYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 383 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
....+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456778899999999999999999999999 99999999999999999999999998753
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.92 E-value=0.068 Score=58.42 Aligned_cols=154 Identities=10% Similarity=0.068 Sum_probs=102.0
Q ss_pred HHHcCCCccHHHH-HHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Q 046803 80 RNSKANFSTDSLL-FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158 (580)
Q Consensus 80 ~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 158 (580)
.....+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+ +.. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHH
Confidence 3445778888766 44221 112233666777778888888776542 211 1134467789999
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 046803 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238 (580)
Q Consensus 159 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 238 (580)
+|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...++.+....+-+.....|.
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 9999988774 568999999999999999999999998753 33455555567777776666666655541
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhc
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMM 268 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 268 (580)
++....+|.++|++++|.+++.++
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 233444566677777777765543
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.87 E-value=0.037 Score=60.55 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=56.3
Q ss_pred HhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046803 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 251 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
....+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 345567777777776555 3456777777777777777777777776643 22333444445555554444
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046803 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367 (580)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 367 (580)
-+..... | .++....+|.+.|++++|++++
T Consensus 730 ~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 730 AKDAETT-G------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHc-C------chHHHHHHHHHcCCHHHHHHHH
Confidence 3333221 1 1222333455566666666666
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.66 E-value=0.081 Score=42.07 Aligned_cols=140 Identities=12% Similarity=0.089 Sum_probs=97.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046803 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 363 (580)
.-.|..++..++..+.... .+..-++.++--....-+=+-..++++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 4467777888888777653 24455666665555555556666666666443222 235555555
Q ss_pred HHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
...+ -.++ .+..-...-+......|.-|.-.+++..++..+|.+|.....++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~-~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECG-VINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHH-HHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHH-HHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 5555 2222 233445566777788899999999999987777878999999999999999999999999999999976
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.65 E-value=0.013 Score=45.35 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC-------C-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE-------K-PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
+..-+-.|...+.+.|+++.|...|++++.. . +...++..|..++.+.|+++.|...+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344556777788888888888888766621 1 2367788899999999999999999999999999987665
Q ss_pred HHH
Q 046803 415 VML 417 (580)
Q Consensus 415 ~~l 417 (580)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 544
No 224
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.56 E-value=0.93 Score=47.22 Aligned_cols=80 Identities=14% Similarity=0.051 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC
Q 046803 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221 (580)
Q Consensus 142 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 221 (580)
..-+.-+..+.+.+++......+.. +..+...-.....+....|+..+|....+.+-..| ...+.....++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3445556677788899998887776 43455555556677788898888888777776655 334455666666666555
Q ss_pred Ch
Q 046803 222 DI 223 (580)
Q Consensus 222 ~~ 223 (580)
.+
T Consensus 151 ~l 152 (618)
T 1qsa_A 151 KQ 152 (618)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.52 E-value=0.011 Score=48.96 Aligned_cols=88 Identities=11% Similarity=0.105 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHhHcCCC-C--CHHHHHHHHHHHHhcCCchHHH
Q 046803 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG---LLNEAYKFVKDVIGEK-P--APAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~-p--~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
...+++-|.+..+. + .++..+...+.-++++.+ ++++++.++++.+... | +...+..|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34455556555432 2 356667667777788877 6668888887666555 5 2556777888899999999999
Q ss_pred HHHHHHHhcCCCCcch
Q 046803 398 EVAEHLLSVEPENPGH 413 (580)
Q Consensus 398 ~~~~~~~~~~p~~~~~ 413 (580)
+.++++++.+|+|..+
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999987543
No 226
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.26 E-value=0.054 Score=52.09 Aligned_cols=74 Identities=9% Similarity=0.034 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHH
Q 046803 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381 (580)
Q Consensus 305 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 381 (580)
+.+..++..+...+...|++++|...++++... .|+...|..+...+.-.|++++|.+.|++++...|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 345566666655566668888888888877753 26666677777777778888888888877777777766543
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.22 E-value=0.036 Score=44.05 Aligned_cols=64 Identities=13% Similarity=-0.019 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHhcCCchH---HHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 376 APAVWTAMLGACKMHKNFDL---GVEVAEHLLSVE-P-ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 376 ~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+..+-..+..++.+..+... ++.+++.+.+.+ | ........|+.++.+.|++++|.+..+.+.+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333334444444333322 444444444433 2 2233444455555555555555555555544
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.93 E-value=0.17 Score=40.97 Aligned_cols=103 Identities=8% Similarity=-0.014 Sum_probs=66.5
Q ss_pred HHHHHHHhHcCCCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHK---NFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 362 ~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
...+-|.+.....|+..+--.+..++.+.. +..+++.+++.+...+|. .......|+.+|.+.|++++|.+..+.+
T Consensus 24 ~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 24 ILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp HHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334444333233456666555555665554 445778888888877774 3456667888888888888888888888
Q ss_pred HhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcc
Q 046803 438 IQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490 (580)
Q Consensus 438 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 490 (580)
.+. .|...++.+.-..+.++|.+.|++
T Consensus 104 L~~--------------------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 104 FEH--------------------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp HHT--------------------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred Hhc--------------------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 763 355556666556666777777765
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.24 Score=42.02 Aligned_cols=128 Identities=13% Similarity=0.085 Sum_probs=75.8
Q ss_pred HhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046803 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 251 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
...++|+++.|.++.+.+ .+...|..+......+|+.+-|.+.|++... |..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888877665 4567788888888888888888888887653 33444455566776665554
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
-+....+ | -++.....+.-.|+++++.+++ ...+.-|... .....+|-.+.|.++.+++
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL-~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIF-AEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHH-HHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHH-HHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 4443321 1 1233344455678888888888 4333222111 1123355566666665544
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.52 Score=39.91 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=67.4
Q ss_pred HHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHH
Q 046803 149 NFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228 (580)
Q Consensus 149 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 228 (580)
+....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456678888888877665 3567888888888888888888888877642 3334444555677666665
Q ss_pred HHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
+-+.....| . +|.....+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555555554 1 3333444555677777777776554
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.67 E-value=0.022 Score=52.48 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=62.9
Q ss_pred HHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHh-cCCc
Q 046803 325 QEGHRVFASMRQEYGLLPG---VEHHVCMVDLFGRA-----GLLNEAYKFVKDVIGEKPA--PAVWTAMLGACKM-HKNF 393 (580)
Q Consensus 325 ~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~p~--~~~~~~ll~~~~~-~g~~ 393 (580)
..|...+++.. .+.|+ -..|..|...|.+. |+.++|.+.|++++.+.|+ ..++......++. .|+.
T Consensus 180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34444455444 33454 44566677777763 7777777777777777773 6666666776666 3777
Q ss_pred hHHHHHHHHHHhcCCCC-cchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 394 DLGVEVAEHLLSVEPEN-PGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 394 ~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
+++.+.++++++..|.. |. ..+.+. ++-.+|..+++++
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~--~~lan~----~~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPH--NKLLVI----LSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSS--CHHHHH----HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCC--hhHHHH----HHHHHHHHHHHHh
Confidence 88888888887766652 32 223332 2334555555544
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.40 E-value=0.12 Score=39.83 Aligned_cols=67 Identities=9% Similarity=0.012 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYG-----LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
-...+...+.+.|+++.|...|+.+.+... -.+....+..|..+|.+.|++++|..++++++...|+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 344555666666666666666666654321 1234566777778888888888888888777767774
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.01 E-value=0.26 Score=39.11 Aligned_cols=90 Identities=11% Similarity=0.085 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHhHcCCC-C--CHHHHHHHHHHHHhcCCchHH
Q 046803 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE---AYKFVKDVIGEK-P--APAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~-p--~~~~~~~ll~~~~~~g~~~~a 396 (580)
.+..+.+-|...... +. |+..+-..+.-++.+.....+ ++.++++..... | .......|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344555556555432 33 666666667777888776665 888886666655 4 234455677789999999999
Q ss_pred HHHHHHHHhcCCCCcchH
Q 046803 397 VEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 397 ~~~~~~~~~~~p~~~~~~ 414 (580)
.+.++.+++.+|+|..+.
T Consensus 94 ~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 999999999999886543
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.67 E-value=0.00014 Score=71.17 Aligned_cols=253 Identities=15% Similarity=0.114 Sum_probs=155.0
Q ss_pred ChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 046803 55 FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134 (580)
Q Consensus 55 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 134 (580)
+++.|.+.-++..+|. .|..|..+..+.++..+|++.|-+. -|...|..++.++.+.|.+++-...+..+.+
T Consensus 40 ~ldRa~eyA~~~n~p~--VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCCCC--CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCCcc--HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5666666666665554 4888888888888888887766332 1555677888888888888887777766655
Q ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC------------
Q 046803 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG------------ 202 (580)
Q Consensus 135 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------------ 202 (580)
. ..++.+-+.|+-+|+|.+++.+-.+++. .+|+.-...+.+-|...|.++.|.-+|..+....
T Consensus 112 ~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 112 K--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp T--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred H--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 4 3445566678888888888766444332 2455455556666666666666655554432110
Q ss_pred --------CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc---CC
Q 046803 203 --------VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS---EL 271 (580)
Q Consensus 203 --------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~ 271 (580)
-.-+..||-.+-.+|...+.+..|...--.++-. +.-...++..|-+.|.+++-+.+++.-. ..
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglErA 261 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLERA 261 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTC
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCch
Confidence 1235678888888998888887665443333321 1123356777888888888777777544 35
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046803 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332 (580)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 332 (580)
..-.|+-|.-.|++- ++++..+.++..-. +.| .--++.+|.+...|.++.-+|.
T Consensus 262 HmGmFTELaILYsKY-~PeKlmEHlklf~s---riN---ipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 262 HMGMFTELAILYSKF-KPQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp CHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSC---CTTTHHHHTTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hcc---HHHHHHHHHHHhhHHHHHHHHh
Confidence 566777777777765 34444444333221 111 1135666666666666555444
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.40 E-value=0.79 Score=37.39 Aligned_cols=103 Identities=8% Similarity=0.133 Sum_probs=64.8
Q ss_pred CCChHHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHhHH
Q 046803 270 ELNVIAWTAMISGYGMHGYG------TEAVELFHRMRAHGVRPNNV----TFVAVLS---ACAHAGLVQEGHRVFASMRQ 336 (580)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~pd~~----t~~~ll~---a~~~~g~~~~a~~~~~~~~~ 336 (580)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|.-+.- .+...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45677888888877777888 7888888877764 555431 1211111 11233677777777777765
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC
Q 046803 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375 (580)
Q Consensus 337 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 375 (580)
. .-.- ...|......-.|+|++..|.+++.++++..|
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 3 2222 66666666666677777777777766666555
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.35 E-value=0.33 Score=38.69 Aligned_cols=66 Identities=8% Similarity=-0.016 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 374 KPAPAVWTAMLGACKMHK---NFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 374 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.|++.+--.+..++.+.. +..+++.+++.+.+.+|. ....+..|+.++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345554444444444443 344667777777766663 345566677777777777777777777655
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.16 Score=53.96 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=48.9
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 384 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
..-|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|.-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456678999999999999999999999999999999999999999999988873
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.20 E-value=3.7 Score=38.45 Aligned_cols=169 Identities=10% Similarity=0.052 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhHHHHHHHHHH
Q 046803 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL----FNLMRDFGVNPDSTTCVCVLAACA 218 (580)
Q Consensus 143 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~ 218 (580)
.+.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+...+.++++|......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3444555588999999999886542 3445667887666654 455556688888888888887776
Q ss_pred hCCCh-----HHHHHHHHHHHHcCC--CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhc---CC
Q 046803 219 QLGDI-----DLGRWVHEFIVGQGL--DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH---GY 288 (580)
Q Consensus 219 ~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 288 (580)
....- .-.........+.|- .-++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 54321 222233333333332 236788888999999999999999988744333555565555544443 43
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 289 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
..++ |...-..++ -|.-.|++..|..+|+...+.
T Consensus 184 ~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 3332 112222233 344678888898888877654
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.08 E-value=0.0035 Score=61.63 Aligned_cols=238 Identities=11% Similarity=0.066 Sum_probs=171.3
Q ss_pred ChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 046803 39 SRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118 (580)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 118 (580)
.+.+|+.|-++..+.+.+.+|..-|-+. .|+..|..+|....+.|.+++-+..+...++..-.|.. =+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHHHh
Confidence 4568888887777888888888777544 56677999999999999999988887766655444433 4568889999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC------------------------CChhH
Q 046803 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD------------------------KSVVA 174 (580)
Q Consensus 119 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------------------~~~~~ 174 (580)
.+++.+-+++. -.|+..-.....+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 99887654432 145555566677888888999999888887652 36779
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh
Q 046803 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254 (580)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 254 (580)
|..+-.+|...+.+.-|.-.--.+. +.|| ....++.-|...|.+++-.++++...... .....+++-|.-.|+|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 9999999999999887765444443 2232 23345666788899999888888877433 4567888888888887
Q ss_pred cCCHHHHHHHHHhccC-----------CChHHHHHHHHHHHhcCChHHHHH
Q 046803 255 CGNVSKAREIFDMMSE-----------LNVIAWTAMISGYGMHGYGTEAVE 294 (580)
Q Consensus 255 ~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~ 294 (580)
- +.++-.+.++.... .....|.-++-.|.+-.+++.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5 44444444443221 244578888888888888887753
No 240
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.00 E-value=4.2 Score=38.36 Aligned_cols=167 Identities=12% Similarity=0.058 Sum_probs=102.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCChhHHHHHHHHHHh
Q 046803 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF----NLMRDFGVNPDSTTCVCVLAACAQ 219 (580)
Q Consensus 144 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~ 219 (580)
+.++..=|.+.+++++|.+++..- ...+.+.|+...|-++- +...+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 344555588999999999876432 34456677776665554 444566788888888888887776
Q ss_pred CCChHH-HHHHHHHH----HHcC--CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHH
Q 046803 220 LGDIDL-GRWVHEFI----VGQG--LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292 (580)
Q Consensus 220 ~~~~~~-a~~~~~~~----~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 292 (580)
...-+- =..+.+.+ .+.| ..-|+.....+...|.+.+++.+|+..|-.-.++.+..+..|+.-+...+...
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~-- 184 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH-- 184 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--
Confidence 654221 12233333 3333 23366777888999999999999999985333333456655554444433211
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 046803 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336 (580)
Q Consensus 293 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 336 (580)
.+|.+.-..++ -|.-.+++..|..+++...+
T Consensus 185 ------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 12333333444 35567888888887776654
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.79 E-value=9.2 Score=41.60 Aligned_cols=251 Identities=10% Similarity=-0.064 Sum_probs=116.7
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhHHHH--HHHHHHhCCChHHHHHHHHHHHHcCC-------CCcHHHhh--HHh
Q 046803 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVC--VLAACAQLGDIDLGRWVHEFIVGQGL-------DVNVVLAT--SLI 249 (580)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~--~li 249 (580)
|....|+.++++.++......+-..+...-.. +.-+....|..+.+..++...+...- .+...... .|.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45567777777777766543211122222222 22233445555566666666554321 01122222 333
Q ss_pred hHhhhcCCHHHHHHHHHhccCCChHH--HHH--HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCC
Q 046803 250 NMYARCGNVSKAREIFDMMSELNVIA--WTA--MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV--AVLSACAHAGL 323 (580)
Q Consensus 250 ~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~a~~~~g~ 323 (580)
-+|.-.++-+-...+...+...+..+ ..+ |...|.-.|+.+-...++..+.+.. +..... .+.-++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 34444455333333333333333221 122 2223344566666666666655421 222222 23334446777
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHhHcCCCCCHHH--HHHHHHHHHhcCCchHHHHH
Q 046803 324 VQEGHRVFASMRQEYGLLPGVEHHV--CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEV 399 (580)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~ 399 (580)
.+.+..+.+.+.. ...|....-. ++.-+|+..|+.....+++ +.+...++..+ ...+.-+....|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTGn~~aIq~LL-~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLA--SDESLLRYGGAFTIALAYAGTGNNSAVKRLL-HVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHH-HHhccCCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7777777777754 2223322222 3344566777876666677 44322333332 22333344456676666666
Q ss_pred HHHHHhcCCCCcchHH--HHHHHHHhcCCh-hHHHHHHHHHHh
Q 046803 400 AEHLLSVEPENPGHYV--MLSNIYALAGRM-DRVEVVRNIMIQ 439 (580)
Q Consensus 400 ~~~~~~~~p~~~~~~~--~l~~~y~~~g~~-~~a~~~~~~m~~ 439 (580)
++.+.+.. |+.+-. .++-+....|+. .++..++..+..
T Consensus 617 v~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 65554432 222222 222223333332 566777777753
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.76 E-value=3.1 Score=33.22 Aligned_cols=86 Identities=10% Similarity=-0.055 Sum_probs=63.9
Q ss_pred HhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 046803 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231 (580)
Q Consensus 152 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 231 (580)
.+||++......+-.+.. +....+.-++....+|.-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.
T Consensus 72 s~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GGCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 356666666666655433 344556667788888998888888888644 357888888889999999999999999999
Q ss_pred HHHHcCCC
Q 046803 232 FIVGQGLD 239 (580)
Q Consensus 232 ~~~~~~~~ 239 (580)
++-+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 98888853
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.02 E-value=1.2 Score=36.25 Aligned_cols=53 Identities=6% Similarity=-0.011 Sum_probs=38.5
Q ss_pred CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 391 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
+|.++|.++|+.++++...-+..+...+..-.++|+.+.|.+++.+....+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 78888888888887765444556666666667888888888888887765533
No 244
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.42 E-value=14 Score=35.96 Aligned_cols=163 Identities=10% Similarity=0.013 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHc-C-C--CCcHHHhhHHhhHhhhc-CCHHHHHHHHHhccC---CChHHH---
Q 046803 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQ-G-L--DVNVVLATSLINMYARC-GNVSKAREIFDMMSE---LNVIAW--- 276 (580)
Q Consensus 208 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~-~--~~~~~~~~~li~~y~~~-g~~~~A~~~~~~~~~---~~~~~~--- 276 (580)
.....+...|.+.|+.++..+++...... + + .-.......|++.+... +..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777776666654321 0 0 11233455666666553 333333344333321 111222
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-CCCCCHHH-
Q 046803 277 ---TAMISGYGMHGYGTEAVELFHRMRAHGVRPNN-----VTFVAVLSACAHAGLVQEGHRVFASMRQEY-GLLPGVEH- 346 (580)
Q Consensus 277 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~- 346 (580)
..++..|...|++.+|..++.++.+.=-..|. ..+..-+..|...+++.++...+....... .+.+++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 14566777777777777777777653111121 234444456667777777777776664322 11122211
Q ss_pred ---HHHHHHHHH-HcCCHHHHHHHHHhH
Q 046803 347 ---HVCMVDLFG-RAGLLNEAYKFVKDV 370 (580)
Q Consensus 347 ---~~~li~~~~-~~g~~~~A~~~~~~~ 370 (580)
..+-..++. ..+++.+|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 112223344 567777777666444
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.37 E-value=14 Score=34.71 Aligned_cols=167 Identities=19% Similarity=0.203 Sum_probs=100.4
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHH----HHHHhCCCCCCHHHHHHHHHHHH
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF----HRMRAHGVRPNNVTFVAVLSACA 319 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~pd~~t~~~ll~a~~ 319 (580)
.|.++..=|.+.+++++|.+++..- ...+.++|+...|-++- +-..+.++++|......|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445556678888888888876432 23455566655554443 44455677888877777777665
Q ss_pred hcCC--HHHHHHHHHHhH---HhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCC
Q 046803 320 HAGL--VQEGHRVFASMR---QEYGL--LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKN 392 (580)
Q Consensus 320 ~~g~--~~~a~~~~~~~~---~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 392 (580)
.... .+. ..+.+.+. .++|- .-++.....+...|.+.+++.+|...| ..+.++.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--VLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--TTSCTTHHHHHHHHHHHHHHTSC
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--HhcCCchHHHHHHHHHHHHHhcC
Confidence 5442 111 12222222 12232 235677778899999999999999988 24544445666555554444333
Q ss_pred chHHHHHHHHHHhcCCCCcchHHH-HHHHHHhcCChhHHHHHHHHHHh
Q 046803 393 FDLGVEVAEHLLSVEPENPGHYVM-LSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 393 ~~~a~~~~~~~~~~~p~~~~~~~~-l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
|.....|.. .+--|...++...|..+++...+
T Consensus 183 ---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222333332 23357788899999998877654
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.28 E-value=5.2 Score=29.76 Aligned_cols=87 Identities=9% Similarity=0.016 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 046803 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199 (580)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 199 (580)
...++|..+-+.+...+- ...+--.-+..+...|++++|..+.+.+.-||...|-+|... +.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 456677777776666553 333333334567789999999999999999999999887654 7788888888887887
Q ss_pred HCCCCCChhHHH
Q 046803 200 DFGVNPDSTTCV 211 (580)
Q Consensus 200 ~~g~~p~~~t~~ 211 (580)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 44444444
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.15 E-value=5.6 Score=29.67 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 046803 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199 (580)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 199 (580)
...++|..+-+.+...+- ...+--.-+..+...|++++|..+.+.+.-||...|-+|... +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 456677777777666553 333333334567789999999999999999999999888654 6777888887777777
Q ss_pred HCCCCCChhHHH
Q 046803 200 DFGVNPDSTTCV 211 (580)
Q Consensus 200 ~~g~~p~~~t~~ 211 (580)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 44444444
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.13 E-value=3 Score=31.24 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 288 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
+.-+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 455777778888888899999999999999999999999999999998765443 456766654
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.49 E-value=15 Score=36.46 Aligned_cols=187 Identities=6% Similarity=0.023 Sum_probs=119.2
Q ss_pred CCChhHHHHHHHHHHHC-----CCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCcHH--HhhHHhhHhhhcC
Q 046803 185 NGFAKEAIGLFNLMRDF-----GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVV--LATSLINMYARCG 256 (580)
Q Consensus 185 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~li~~y~~~g 256 (580)
.|++++|++.+..+.+. ...........++..|...++++...+.+..+.+. |..+... ..+.++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37789999888776642 22334556788899999999999888777666543 3222211 1122333333333
Q ss_pred CHH--HHHHHHHhccC---C--C-----hHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCH---HHHHHHHHHHH
Q 046803 257 NVS--KAREIFDMMSE---L--N-----VIAWTAMISGYGMHGYGTEAVELFHRMRA--HGVRPNN---VTFVAVLSACA 319 (580)
Q Consensus 257 ~~~--~A~~~~~~~~~---~--~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~---~t~~~ll~a~~ 319 (580)
..+ .-..+.+.... . - ......|...|...|++.+|..++.++.. .|..+.. ..+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222 22333333321 1 0 12335677888999999999999999875 3333221 35666777899
Q ss_pred hcCCHHHHHHHHHHhHHhc-CC--CCC--HHHHHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 320 HAGLVQEGHRVFASMRQEY-GL--LPG--VEHHVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~-~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
..+++..|..+++++.... .. .|+ ...|.+++..+...+++.+|...|.+..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999875321 12 222 4567888888899999999988885554
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.46 E-value=32 Score=37.50 Aligned_cols=286 Identities=10% Similarity=-0.014 Sum_probs=125.1
Q ss_pred HHHHHHHHcCCCccHH-HHH-HHHHHHCCCCCChhhHHHH-HHHHHccCChHHHHHHHHHHHHhC--CCCchHHHHHHHH
Q 046803 75 NTLIIRNSKANFSTDS-LLF-YRRMIVSNISPSNYTFSAV-IKSCAHLSILNLGRAVHCHVFVSG--YDSDLHVQAALVN 149 (580)
Q Consensus 75 ~~li~~~~~~g~~~~A-~~~-~~~m~~~g~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~ 149 (580)
.++.+++...|-..+. +.. ..++-+. + +..-+.++ --+....|+.+++..++...+..+ -.+.......+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 3456677777765443 211 1233322 1 22222222 223556677777766655443311 0112223333444
Q ss_pred HHHhCCCHHHHHHHHccCCC-CC----------hhHHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCChhH--HH--HH
Q 046803 150 FYAKSNNVDVARKVFDRMPD-KS----------VVAWNSMISGYEQNGF-AKEAIGLFNLMRDFGVNPDSTT--CV--CV 213 (580)
Q Consensus 150 ~y~~~g~~~~A~~~f~~~~~-~~----------~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t--~~--~l 213 (580)
+...+|.-+++..++..... .+ +..-.++.-|.+-.|. -+++.+.+..+.... +... .. ++
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalAL 496 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGM 496 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 45555655556555443221 11 1112223333333332 235556555555421 2111 12 22
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-CCh-HHHH---HHHHHHHhcCC
Q 046803 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-LNV-IAWT---AMISGYGMHGY 288 (580)
Q Consensus 214 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~ 288 (580)
...+...|+.+....++..+.+.. ..+..-..++.-++.-.|+.+.+..+.+.+.. .|. .-|. ++.-+|+-.|+
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 223345566666666666655432 22222222233333345666666666655542 222 2232 23345666677
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHH
Q 046803 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL-NEAYKFV 367 (580)
Q Consensus 289 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~ 367 (580)
.....++++.+... ...+......+.-+....|+.+.+.++++.+.+ ...|.+..-.++.-+....|.. .+|.+++
T Consensus 576 ~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 576 NSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 65555577766653 111222222222233345555555666655543 2234444444444444444443 4566666
Q ss_pred HhH
Q 046803 368 KDV 370 (580)
Q Consensus 368 ~~~ 370 (580)
...
T Consensus 653 ~~L 655 (963)
T 4ady_A 653 DPL 655 (963)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.09 E-value=7.5 Score=31.35 Aligned_cols=72 Identities=10% Similarity=0.091 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 341 LPGVEHHVCMVDLFGRAGLL---NEAYKFVKDVIGEKPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 341 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
.|+..+--.+.-++.+.... .+++.++++.....|+ ......|.-++.+.|++++|.+..+.+++.+|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 35555555555666666544 3566666555544452 344556777889999999999999999999998754
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.73 E-value=2.2 Score=45.37 Aligned_cols=49 Identities=6% Similarity=0.011 Sum_probs=23.1
Q ss_pred HHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHH
Q 046803 354 FGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEH 402 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 402 (580)
+...|+++-|+++-+++....|+ ..+|..|..+|...|+++.|+-.+.-
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 33444455555554444444442 44455555555555555554444433
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.08 E-value=4 Score=33.96 Aligned_cols=24 Identities=13% Similarity=-0.122 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhH
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDV 370 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~ 370 (580)
+..+.+++...|.+..|...|+++
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 344555555566666665555444
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.85 E-value=4.6 Score=33.55 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=15.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHcCC
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVIGE 373 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~~~ 373 (580)
-+..+|.+.+++++|+.++ +.++.
T Consensus 127 kia~C~~~l~~~~~Ai~~L-e~Ip~ 150 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAIL-DGIPS 150 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHH-HTSCG
T ss_pred HHHHHHHHHCCHHHHHHHH-hcCCc
Confidence 3566667777777777777 55543
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.14 E-value=1.8 Score=42.43 Aligned_cols=67 Identities=16% Similarity=0.026 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCC
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ-----KGLKKHV 446 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-----~~~~~~~ 446 (580)
...++.++...|+++++...++.++..+|-+...+..|+.+|.+.|+..+|.+.|+...+ .|+.|.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 344566667778888888888888888888777888888888888888888887777543 4666544
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.81 E-value=6.6 Score=31.23 Aligned_cols=71 Identities=10% Similarity=0.098 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 342 PGVEHHVCMVDLFGRAGLL---NEAYKFVKDVIGEKPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
|+..+--.+.-++.+.... .+++.++++.....|. ...+-.|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3333333344444444433 3455555444433442 344555666777777777777777777777777643
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.37 E-value=17 Score=41.19 Aligned_cols=142 Identities=11% Similarity=0.045 Sum_probs=92.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC----C----------------
Q 046803 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE----L---------------- 271 (580)
Q Consensus 212 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~---------------- 271 (580)
.++..+...+..+.+.++... .+.+....-.+..+|..+|++++|.+.|.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 344555556666665554432 234444445667889999999999999987642 0
Q ss_pred ------ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--H--HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 046803 272 ------NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN--V--TFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341 (580)
Q Consensus 272 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 341 (580)
-..-|..++..|-+.+.++.++++-+..++....-+. . .|..+..++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 0123566777888888888888887776653221121 1 4677888888999999998888776421 2
Q ss_pred CCHHHHHHHHHHHHHcCCHH
Q 046803 342 PGVEHHVCMVDLFGRAGLLN 361 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g~~~ 361 (580)
-.......||..++..|.++
T Consensus 969 ~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHhCCChh
Confidence 23556666777777666544
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.96 E-value=13 Score=42.07 Aligned_cols=163 Identities=9% Similarity=-0.007 Sum_probs=89.5
Q ss_pred HHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHH
Q 046803 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225 (580)
Q Consensus 146 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 225 (580)
.++..+.+.+..+.|.++..-.++ +..+--.+..+|...|++++|.+.|++.-. |+..+..... ....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~----------~~~~ 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA----------VLRE 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCS----------SHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhh----------hhcc
Confidence 345555666677666665554443 333334566677788888888888876532 2222111000 0000
Q ss_pred HHHHHHHHHHcC--CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc----CCC----hHHHHHHHHHHHhcCChHHHHHH
Q 046803 226 GRWVHEFIVGQG--LDVNVVLATSLINMYARCGNVSKAREIFDMMS----ELN----VIAWTAMISGYGMHGYGTEAVEL 295 (580)
Q Consensus 226 a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~~ 295 (580)
...+.... ...-..-|.-++..+.+.|.++.+.++-.... ..+ ...|..+..++...|++++|...
T Consensus 885 ----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 885 ----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 00011100 01112345556666666776666665544322 122 12588888999999999999998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 046803 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326 (580)
Q Consensus 296 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 326 (580)
+-.+.....+ ...+..|+...+..|..+.
T Consensus 961 L~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 961 LMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 8887764433 3456667776666665443
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.90 E-value=10 Score=28.29 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=58.0
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
..++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||+..|-+|-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 55777777777776653 22222233445667899999999999888899999977754 356777788777777776
Q ss_pred CCCCCCHHHH
Q 046803 302 HGVRPNNVTF 311 (580)
Q Consensus 302 ~g~~pd~~t~ 311 (580)
+| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 3444444
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.79 E-value=9.5 Score=28.42 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
..++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||+..|-++-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 55777777777776653 22222233445677899999999988888899999977654 467888888888877777
Q ss_pred CCCCCCHHHHH
Q 046803 302 HGVRPNNVTFV 312 (580)
Q Consensus 302 ~g~~pd~~t~~ 312 (580)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 34444443
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.61 E-value=7.3 Score=30.93 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 288 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
+.-+..+-++.+....+.|+.......+.+|.+.+++..|.++|+.++.+.+. ....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHHH
Confidence 34466777777778889999999999999999999999999999999875543 3556766654
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.99 E-value=10 Score=36.95 Aligned_cols=69 Identities=10% Similarity=0.140 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH----hcCCCCCHHH
Q 046803 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ----EYGLLPGVEH 346 (580)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 346 (580)
..++..+...|++++|+..++.+... -+-+...+..++.++...|+..+|.+.|+...+ +.|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34566667777777777777777653 233566777777788888888888777776543 3466666543
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.32 E-value=6.5 Score=29.45 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=35.0
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 371 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
+..-|++.+..+.+.+|++.+++..|.++++-+...-.+...+|-.+
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 35668899999999999999999999999988875443333445443
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.47 E-value=35 Score=31.84 Aligned_cols=168 Identities=11% Similarity=0.150 Sum_probs=99.3
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHH
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL----FHRMRAHGVRPNNVTFVAVLSACA 319 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~ll~a~~ 319 (580)
.|.++..=|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.++++|......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455666688888888888876542 3345566776655554 444455678888877777777665
Q ss_pred hcCCHH-HHHHHHHHhHH---hcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc---
Q 046803 320 HAGLVQ-EGHRVFASMRQ---EYGL--LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH--- 390 (580)
Q Consensus 320 ~~g~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~--- 390 (580)
....-+ .=.++.+.+.+ +.|- ..++.....+...|.+.|++.+|...|- .+..-|+..+..++.-+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i--~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM--LGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH--hCCCccHHHHHHHHHHHHHhcCC
Confidence 432111 11222233221 1222 2367778889999999999999999882 22211355555555444433
Q ss_pred CCchHHHHHHHHHHhcCCCCcchHHH-HHHHHHhcCChhHHHHHHHHHHh
Q 046803 391 KNFDLGVEVAEHLLSVEPENPGHYVM-LSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 391 g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
|...++ ..|.. .+--|...|+...|..+++...+
T Consensus 182 ~~~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333322 22222 23346678899999999887654
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.29 E-value=33 Score=33.75 Aligned_cols=93 Identities=11% Similarity=-0.035 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-----CChHHHHHH--
Q 046803 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQG--LDVNVVLATSLINMYARCGNVSKAREIFDMMSE-----LNVIAWTAM-- 279 (580)
Q Consensus 209 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-- 279 (580)
+...+...+.+.|+++.|.+++.++.... ...-...+-.++.++...+++..+...+.+... +|....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55566677777777777777777766532 223345556666666667777766666665531 222222211
Q ss_pred --HHHHHhcCChHHHHHHHHHHHh
Q 046803 280 --ISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 280 --i~~~~~~g~~~~A~~~~~~m~~ 301 (580)
+..+...+++.+|-..|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122334566666666655543
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.13 E-value=13 Score=33.61 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=28.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 283 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
..+.|..++|++....-++.. +-|...=..++..++-.|+++.|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445566666666666555532 1233333445556666666666666555554
No 267
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.95 E-value=53 Score=32.46 Aligned_cols=195 Identities=10% Similarity=0.002 Sum_probs=114.5
Q ss_pred CCHHHHHHHHccCCC-----C----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCChhH--HHHHHHHHHhCCC
Q 046803 155 NNVDVARKVFDRMPD-----K----SVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVNPDSTT--CVCVLAACAQLGD 222 (580)
Q Consensus 155 g~~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t--~~~ll~a~~~~~~ 222 (580)
|+++.|.+.+-.+.+ . .......++..|...|+++...+.+..+... |..+...+ ...++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 678888777644431 1 3445777888999999999988877666543 43333322 1222232233333
Q ss_pred hHHHHHHHHHHHHc------C-CCC---cHHHhhHHhhHhhhcCCHHHHHHHHHhccC----C-C----hHHHHHHHHHH
Q 046803 223 IDLGRWVHEFIVGQ------G-LDV---NVVLATSLINMYARCGNVSKAREIFDMMSE----L-N----VIAWTAMISGY 283 (580)
Q Consensus 223 ~~~a~~~~~~~~~~------~-~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~-~----~~~~~~li~~~ 283 (580)
.+.-.. ...... | +-. .......|...|...|++.+|.+++..+.. . + +..+...+..|
T Consensus 110 ~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 332111 111111 1 111 233456788999999999999999988762 1 1 34667778889
Q ss_pred HhcCChHHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHc
Q 046803 284 GMHGYGTEAVELFHRMRA----HGVRPNN--VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357 (580)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~----~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 357 (580)
...+++.+|..++++... ....|+. ..+...+..+.+.+++.+|.+. |..+...+...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~----------------y~e~~~~~~~~ 251 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY----------------LQEIYQTDAIK 251 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH----------------HHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHhccccc
Confidence 999999999999988642 2222222 2344455555666666665442 33455556666
Q ss_pred CCHHHHHHHH
Q 046803 358 GLLNEAYKFV 367 (580)
Q Consensus 358 g~~~~A~~~~ 367 (580)
++.......+
T Consensus 252 ~d~~~~~~~L 261 (445)
T 4b4t_P 252 SDEAKWKPVL 261 (445)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6665554444
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.28 E-value=39 Score=28.98 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=17.9
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCC
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (580)
+..+-...+.++.+.|+.+....+...+..++...-...+.++...|.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 333333344444444433222222222333444333333444444443
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.74 E-value=6.2 Score=35.74 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=51.0
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
..+.+.|.+++|++.....++.+| |...-..|+..++-.|++++|..-++...+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 446688999999999988888888 67777788899999999999999999999999873
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=68.04 E-value=23 Score=28.15 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHh
Q 046803 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249 (580)
Q Consensus 188 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 249 (580)
.-+..+-++.+....+.|++......+.+|.+.+++..|..+++-++..- .+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 33455666666667788999999999999999999999999998887543 22344555444
No 271
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=63.43 E-value=1.4e+02 Score=30.83 Aligned_cols=393 Identities=8% Similarity=-0.040 Sum_probs=204.6
Q ss_pred HHHHHHHHhCCCC-ChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCC
Q 046803 26 QVHAHLIVAGYGR-SRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP 104 (580)
Q Consensus 26 ~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 104 (580)
+|-+.+.+..-.| ...+-+..+..+.+..++....++|.. +..+...-.....+....|+..+|....+.+-..|..
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~- 134 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS- 134 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-
Confidence 5555555542111 122333445566677788888887776 4445555555667777888888888888887766533
Q ss_pred ChhhHHHHHHHHHccCChHHH--HHHHHHHHHhC-----------CCCch-HHHHHHHHHHHhCCCHHHHHHHHccCCCC
Q 046803 105 SNYTFSAVIKSCAHLSILNLG--RAVHCHVFVSG-----------YDSDL-HVQAALVNFYAKSNNVDVARKVFDRMPDK 170 (580)
Q Consensus 105 ~~~t~~~ll~a~~~~~~~~~a--~~~~~~~~~~g-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 170 (580)
.......++..+.+.|.+... .+=...+...| ++++. .....++.++.+-.. +........ +
T Consensus 135 ~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~---~~~~~~~~~-~ 210 (618)
T 1qsa_A 135 QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFARTTG-A 210 (618)
T ss_dssp CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHHHHSC-C
T ss_pred CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHh---HHHHHhccC-C
Confidence 344567777777766655332 22222222222 11111 122333333322222 222222211 1
Q ss_pred Chh---HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH----HhCCChHHHHHHHHHHHHcCCCCcHH
Q 046803 171 SVV---AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC----AQLGDIDLGRWVHEFIVGQGLDVNVV 243 (580)
Q Consensus 171 ~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----~~~~~~~~a~~~~~~~~~~~~~~~~~ 243 (580)
+.. ....-+.-+.+ .+.+.|...|....+.+ ..+......+-... ...+...++...+....... .+..
T Consensus 211 ~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 286 (618)
T 1qsa_A 211 TDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTS 286 (618)
T ss_dssp CHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHH
T ss_pred ChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChH
Confidence 111 11112233333 37789999998886543 22333322222222 23342455666666654433 3333
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSELN---VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 320 (580)
...-.+....+.|+++.|...|..|.... ....-=+..++...|+.++|..+|+++... . +|-.++. ..+
T Consensus 287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~ 359 (618)
T 1qsa_A 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQR 359 (618)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHH
Confidence 33344445557799999999999997532 222223556777889999999999998752 2 3333332 223
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC---H-H--HHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCch
Q 046803 321 AGLVQEGHRVFASMRQEYGLLPG---V-E--HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~p~---~-~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 394 (580)
.|..-. . ......+. . . ....-+..+...|...+|...+...... .+......+.......|..+
T Consensus 360 Lg~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~a~~~~~~~ 430 (618)
T 1qsa_A 360 IGEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-KSKTEQAQLARYAFNNQWWD 430 (618)
T ss_dssp TTCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTTCHH
T ss_pred cCCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCChH
Confidence 332100 0 00001110 0 0 1122355677899999999888555543 34444445555667788888
Q ss_pred HHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 046803 395 LGVEVAEHLLSVEP---ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444 (580)
Q Consensus 395 ~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 444 (580)
.++....+....+. .-|..|..++.-+++.-.++...-.---..+.+..+
T Consensus 431 ~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 431 LSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp HHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 88776654433220 123456667777776666665543322334445544
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.69 E-value=88 Score=30.65 Aligned_cols=58 Identities=5% Similarity=-0.041 Sum_probs=26.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPN--NVTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
.+..-|.+.|+.++|.+.|.++...-..+. ...+..++..+...+++..+...++++.
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344444444555555555544443211111 1234444455555555555555555543
No 273
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=62.12 E-value=86 Score=28.41 Aligned_cols=17 Identities=0% Similarity=-0.031 Sum_probs=9.3
Q ss_pred HHhccCChhHHHHHHcc
Q 046803 49 LVCDAGFITYAQRIFFC 65 (580)
Q Consensus 49 ~~~~~~~~~~A~~~f~~ 65 (580)
..+..|+.+-+..+++.
T Consensus 37 ~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 37 YAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHhC
Confidence 44455566655555554
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.84 E-value=77 Score=27.21 Aligned_cols=89 Identities=15% Similarity=0.220 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECC
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLS--VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ 455 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~ 455 (580)
..|-..+..| ..++...+..+|..+.. ++-.-+..|...+..+...|++.+|.++++.=++++-.|
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P----------- 148 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP----------- 148 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS-----------
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-----------
Confidence 3455555544 23446688888888875 445667788889999999999999999999877765443
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccCC
Q 046803 456 KNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPE 492 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd 492 (580)
.+...+...+...+|.+.+++.|
T Consensus 149 --------------~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 149 --------------YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred --------------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 33445555666677777777333
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.68 E-value=50 Score=29.54 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=22.5
Q ss_pred hCCChHHHHHHHHHHHHcCCCCcHH--HhhHHhhHhhhcCCHHHHHHHHH
Q 046803 219 QLGDIDLGRWVHEFIVGQGLDVNVV--LATSLINMYARCGNVSKAREIFD 266 (580)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~y~~~g~~~~A~~~~~ 266 (580)
..++......+.+.+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3444444455666666666544321 11223333444555555544444
No 276
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=60.03 E-value=78 Score=26.68 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=19.1
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCC
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (580)
+..+-...+.++.+.|+.+....+...+..++...-...+.++.+.+.
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 344444444444444443322233333333444333344444444443
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.97 E-value=73 Score=25.94 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 046803 394 DLGVEVAEHLLSVE--PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444 (580)
Q Consensus 394 ~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 444 (580)
+.+..+|..+...+ -.-+..|...+..+...|++.+|.++++.=++++-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44788888887544 5566778888889999999999999998877765443
No 278
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=57.70 E-value=1.8e+02 Score=30.31 Aligned_cols=79 Identities=10% Similarity=0.077 Sum_probs=35.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHh---CCChh
Q 046803 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ---NGFAK 189 (580)
Q Consensus 113 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~---~g~~~ 189 (580)
..++.-.|+++.|.+.+... ...|....... +...|-+.....++..-......-+..||..|.+ ..++.
T Consensus 301 f~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIa---L~~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~ 373 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIG---LASLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPR 373 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHH---HHHTTC-----------------CHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHhhHHHHHHHHHhc----CchhHHHHHHH---HHHcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHH
Confidence 33444568888888866533 12222222222 2223333321111111001112346677777765 47788
Q ss_pred HHHHHHHHH
Q 046803 190 EAIGLFNLM 198 (580)
Q Consensus 190 ~A~~~~~~m 198 (580)
+|++.|--+
T Consensus 374 ~Al~Y~~li 382 (661)
T 2qx5_A 374 VAVEYLVLI 382 (661)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHHH
Confidence 888887766
No 279
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=57.15 E-value=65 Score=33.62 Aligned_cols=16 Identities=0% Similarity=-0.004 Sum_probs=13.6
Q ss_pred HhcCChhHHHHHHHHH
Q 046803 422 ALAGRMDRVEVVRNIM 437 (580)
Q Consensus 422 ~~~g~~~~a~~~~~~m 437 (580)
...|+|++|.+.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 6899999999887764
No 280
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.96 E-value=49 Score=26.09 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCCCC---hhHHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCChh
Q 046803 144 QAALVNFYAKSNNVDVARKVFDRMPDKS---VVAWNSMISGYEQNGF--AKEAIGLFNLMRDFGVNPDST 208 (580)
Q Consensus 144 ~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 208 (580)
.+.++.=|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3456777888888888888888886552 2344444555555432 356677777777766554443
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.90 E-value=97 Score=25.60 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 046803 394 DLGVEVAEHLLS--VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444 (580)
Q Consensus 394 ~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 444 (580)
+....+|..|.. ++-.-+..|...+..+...|++.+|.++++.=++++-.|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 346677888775 445567788888999999999999999999887766443
No 282
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=50.87 E-value=1.1e+02 Score=25.66 Aligned_cols=145 Identities=10% Similarity=0.065 Sum_probs=68.6
Q ss_pred HHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHH
Q 046803 148 VNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227 (580)
Q Consensus 148 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 227 (580)
+..+.+.+..+....+.+.+..++...-...+.++.+.|.. ++...+..+.. .++...-...+.++...++.+...
T Consensus 35 ~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~ 110 (201)
T 3ltj_A 35 AYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDERAVE 110 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHH
T ss_pred HHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHH
Confidence 33333333333333333334444444444444555555543 23333333332 355555556666666666543333
Q ss_pred HHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
.+.. +.+ .++..+-...+.++.+.|+.+....+...+..++...-...+.++...|. .++...+..+.+
T Consensus 111 ~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 111 PLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHH-HTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHH-HHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3322 222 44555666666666666654333333333444555555555555555554 345555555543
No 283
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=50.57 E-value=5.2 Score=23.87 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=12.7
Q ss_pred CCCccccc-cCccccCCCC
Q 046803 562 DRLRFHHF-KRGSCSCLDY 579 (580)
Q Consensus 562 d~~~~h~~-~~g~csc~~~ 579 (580)
.|-.-|.. ++|.|||+-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 34445555 7899999976
No 284
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.79 E-value=1.2e+02 Score=25.60 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=41.4
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHH
Q 046803 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284 (580)
Q Consensus 205 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 284 (580)
+|...-...+.++...++.+....+ ..+.+ .++..+-...+.++.+.|..+....+...+..++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHH-HHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4444444445555555543322222 22221 3444555555555555555333333333333455554455555555
Q ss_pred hcCChHHHHHHHHHHHh
Q 046803 285 MHGYGTEAVELFHRMRA 301 (580)
Q Consensus 285 ~~g~~~~A~~~~~~m~~ 301 (580)
+.+. .++...+.++.+
T Consensus 169 ~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHCS-HHHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHHh
Confidence 5554 344455555444
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.19 E-value=1e+02 Score=26.63 Aligned_cols=83 Identities=6% Similarity=-0.031 Sum_probs=34.6
Q ss_pred HHcCCCccHHHHHHHHHHHCCCCCChhh--HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCC
Q 046803 81 NSKANFSTDSLLFYRRMIVSNISPSNYT--FSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH--VQAALVNFYAKSNN 156 (580)
Q Consensus 81 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~ 156 (580)
.++.|+.+-...+++.+...|..++... -.+.+...+..|+.+ +.+.+++.|..++.. ...+.+...+..|+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 3445665555555554444444333211 111222233344443 333344455433221 11122333445566
Q ss_pred HHHHHHHHccC
Q 046803 157 VDVARKVFDRM 167 (580)
Q Consensus 157 ~~~A~~~f~~~ 167 (580)
.+-...+++..
T Consensus 92 ~~~~~~Ll~~~ 102 (241)
T 1k1a_A 92 PTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 66555555543
No 286
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=47.97 E-value=1.5e+02 Score=27.46 Aligned_cols=194 Identities=12% Similarity=0.104 Sum_probs=88.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHccCCCCCh--hHHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCChh---HHHHHHHHH
Q 046803 145 AALVNFYAKSNNVDVARKVFDRMPDKSV--VAWNSMISGYEQNGF--AKEAIGLFNLMRDFGVNPDST---TCVCVLAAC 217 (580)
Q Consensus 145 ~~li~~y~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~ 217 (580)
..++.=|...|+.++|...++++..|.- ..-..+|..-...++ -+.+-.++..+.. ++-+... .|..++..+
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Confidence 4567778888888888888888876531 112223333333332 2234445566653 3332222 234444433
Q ss_pred HhCC-ChHHHHHHHHH----HHHcCCCCcHHHhhHHhhHhhhcCC--HHHHHHHHHhccC-----------C----Ch--
Q 046803 218 AQLG-DIDLGRWVHEF----IVGQGLDVNVVLATSLINMYARCGN--VSKAREIFDMMSE-----------L----NV-- 273 (580)
Q Consensus 218 ~~~~-~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~y~~~g~--~~~A~~~~~~~~~-----------~----~~-- 273 (580)
-... +...|..++.. ++..++-|-..+....-..-...|. +..|..++. ++. + +.
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~-~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLS-MSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHH-TCC----CCCSSCCCSTTSCHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhc-ccccHhHHhhhcCCCCCCCCHHH
Confidence 3222 22333333333 3333332222222211111011111 233333331 110 1 11
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhHHhcCCCC
Q 046803 274 --IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL--VQEGHRVFASMRQEYGLLP 342 (580)
Q Consensus 274 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p 342 (580)
...+.++.-|...|+.++|.+.++++..-...| ......+..+.-+.++ .+...+++..+.+. ++-+
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls 235 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STIT 235 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCC
Confidence 134567778888888888888888875311111 2233344444444333 34455666666544 4433
No 287
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=46.15 E-value=94 Score=26.87 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhHHhcCCCCCH-HHH-----HHHHHHHHHcCCHHHHHHHHHhHcCCCCCHH
Q 046803 324 VQEGHRVFASMRQEYGLLPGV-EHH-----VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA 378 (580)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~p~~-~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 378 (580)
++.|..+|+.+.++..+.... ... -..+-.|.+.|.+++|.+++++.++..|+..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~ 148 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQ 148 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCch
Confidence 566777777776654332221 111 1234456778888888888877776655443
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.83 E-value=47 Score=27.12 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCCCC---hhHHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCChh
Q 046803 144 QAALVNFYAKSNNVDVARKVFDRMPDKS---VVAWNSMISGYEQNGF--AKEAIGLFNLMRDFGVNPDST 208 (580)
Q Consensus 144 ~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 208 (580)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3556777878888888888888886552 2344444455554322 345667777777766554443
No 289
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=44.49 E-value=1.7e+02 Score=26.06 Aligned_cols=18 Identities=0% Similarity=-0.125 Sum_probs=7.1
Q ss_pred CcHHHhhHHhhHhhhcCC
Q 046803 240 VNVVLATSLINMYARCGN 257 (580)
Q Consensus 240 ~~~~~~~~li~~y~~~g~ 257 (580)
++..+-...+.+..+.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444443
No 290
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=43.89 E-value=8.1 Score=26.32 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.0
Q ss_pred ceEEeeCCCccccccCccccCC
Q 046803 556 REIIVRDRLRFHHFKRGSCSCL 577 (580)
Q Consensus 556 ~~~~~~d~~~~h~~~~g~csc~ 577 (580)
+.|=+.|.+..|+|+||+-+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4577899999999999996543
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.79 E-value=78 Score=28.01 Aligned_cols=87 Identities=11% Similarity=0.031 Sum_probs=44.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHh--CCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 046803 280 ISGYGMHGYGTEAVELFHRMRA--HGVRP----NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~--~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 353 (580)
+..+..+.++++|..++++..+ .+.++ +.......+..-.....-.-+..+.+.+. . .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~---~-~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL---S-SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH---T-CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---h-cCCHHHHHHHHHH
Confidence 4556666777777777665543 12221 11122222222222222223333444442 1 4455556667788
Q ss_pred HHHcCCHHHHHHHHHhH
Q 046803 354 FGRAGLLNEAYKFVKDV 370 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~ 370 (580)
+.+.|+-++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88889999888888543
No 292
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=41.87 E-value=83 Score=28.00 Aligned_cols=16 Identities=6% Similarity=0.084 Sum_probs=7.0
Q ss_pred HHHhCCCHHHHHHHHc
Q 046803 150 FYAKSNNVDVARKVFD 165 (580)
Q Consensus 150 ~y~~~g~~~~A~~~f~ 165 (580)
..+..|+.+-+..+++
T Consensus 45 ~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 45 NAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3344444444444443
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.64 E-value=1.4e+02 Score=25.68 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=31.5
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCCHHHHHHHHccC
Q 046803 113 IKSCAHLSILNLGRAVHCHVFVSGYDSDLH--VQAALVNFYAKSNNVDVARKVFDRM 167 (580)
Q Consensus 113 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~ 167 (580)
|...+..|+.+..+.+++...+.|..++.. ...+.+...+..|+.+-+..+++.-
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 334455678877777777666666544321 1223344455667777666666543
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.10 E-value=1e+02 Score=27.20 Aligned_cols=23 Identities=9% Similarity=-0.201 Sum_probs=15.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 046803 178 MISGYEQNGFAKEAIGLFNLMRD 200 (580)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~ 200 (580)
-++.+....++++|++++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45666777777777777776643
No 295
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=39.10 E-value=1.3e+02 Score=25.60 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=34.2
Q ss_pred HHHHHHHHHhHcCCCCCH--HHH-----HHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 360 LNEAYKFVKDVIGEKPAP--AVW-----TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 360 ~~~A~~~~~~~~~~~p~~--~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
++.|+.++ +.+...-+. ... -..+..|.+.|.+++|.+++++..+..+.+...-..|..+
T Consensus 94 LESAl~v~-~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIW-GSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHH-TTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 56777777 666433331 111 2344578899999999999999887776655444444333
No 296
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=39.08 E-value=1.8e+02 Score=24.85 Aligned_cols=82 Identities=10% Similarity=-0.011 Sum_probs=45.2
Q ss_pred HHHHHHHccCCC--CCh---hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhCCChHHHHHHHH
Q 046803 158 DVARKVFDRMPD--KSV---VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS-TTCVCVLAACAQLGDIDLGRWVHE 231 (580)
Q Consensus 158 ~~A~~~f~~~~~--~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~ 231 (580)
+.+.+.|...+. .|. ..|-..+..+ ..+...++.++|..|...|+--.. .-|......+...|++.+|.++|.
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555554432 233 2444444433 133355777777777766654433 245555556666677777777777
Q ss_pred HHHHcCCCC
Q 046803 232 FIVGQGLDV 240 (580)
Q Consensus 232 ~~~~~~~~~ 240 (580)
.-++.+-.|
T Consensus 140 ~GI~~~A~P 148 (202)
T 3esl_A 140 LGAENNCRP 148 (202)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCcc
Confidence 666665444
No 297
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=38.11 E-value=69 Score=31.18 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=13.2
Q ss_pred HHHHHhccCChhHHHHHHccCCC
Q 046803 46 LLSLVCDAGFITYAQRIFFCIPS 68 (580)
Q Consensus 46 ll~~~~~~~~~~~A~~~f~~~~~ 68 (580)
.+...+..|+++-...+++.-..
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~ 39 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGAS 39 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCC
Confidence 33345566677766666665433
No 298
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=37.94 E-value=2.8e+02 Score=26.65 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc-CCCCCHHH---HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHH
Q 046803 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI-GEKPAPAV---WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416 (580)
Q Consensus 341 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 416 (580)
.|....+..++.+| +.+++.+..+++++.- .+..|+.. +..|..... ...+.++ ..|-..-.+..
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~ 321 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAH 321 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHH
Confidence 45666666666665 5667776666663221 22334432 111111111 1112222 23544455556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 417 LSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 417 l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
++..+.- ..++++..+.+|...|.-
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 6655543 678999999999887654
No 299
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.95 E-value=1.7e+02 Score=24.14 Aligned_cols=18 Identities=6% Similarity=0.218 Sum_probs=10.7
Q ss_pred HHhCCCHHHHHHHHccCC
Q 046803 151 YAKSNNVDVARKVFDRMP 168 (580)
Q Consensus 151 y~~~g~~~~A~~~f~~~~ 168 (580)
.+..|+.+....++..-.
T Consensus 12 A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHTTCHHHHHHHHTCTT
T ss_pred HHHhccHHHHHHHHHcCC
Confidence 345666666666665443
No 300
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=36.49 E-value=48 Score=24.54 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=37.1
Q ss_pred HHHHHHHhCCCCChhhhchHHHHHhcc---CChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHH
Q 046803 27 VHAHLIVAGYGRSRSMLTKLLSLVCDA---GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDS 90 (580)
Q Consensus 27 ~~~~~~~~g~~~~~~~~~~ll~~~~~~---~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 90 (580)
|...+++.|+-. ..-...+- .. .+.+.|+++++.++.+...+|..++.++...|+..-|
T Consensus 26 vld~L~~~~vlt-~~~~e~I~----~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 26 LWDVLLSRELFR-PHMIEDIQ----RAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp THHHHHHTTSSC-HHHHHHHH----TSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHcCCCC-HHHHHHHH----hccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 555566655432 22223332 22 3577888888888888888888888888776665444
No 301
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.10 E-value=2.5e+02 Score=26.29 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCCCC---hhHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCChhH---HHHHHHH
Q 046803 144 QAALVNFYAKSNNVDVARKVFDRMPDKS---VVAWNSMISGYEQNG-FAKEAIGLFNLMRDFGVNPDSTT---CVCVLAA 216 (580)
Q Consensus 144 ~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a 216 (580)
...++.=|...|+.++|.+.++++..|. ......+..++-+.. .-+.+..++..+.+.|+-+.... |..++..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~ 93 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILEL 93 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 3457777888899999999999987653 122333333332222 23455667777776665443332 3333333
Q ss_pred HHhCC-ChHHHHHHHHHHHH
Q 046803 217 CAQLG-DIDLGRWVHEFIVG 235 (580)
Q Consensus 217 ~~~~~-~~~~a~~~~~~~~~ 235 (580)
+-... +...|...+..+..
T Consensus 94 l~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 94 AEDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHHTTTCTTHHHHHHHHHG
T ss_pred ChHhhcCccchHHHHHHHHH
Confidence 33332 55566666666554
No 302
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.69 E-value=44 Score=29.71 Aligned_cols=54 Identities=2% Similarity=-0.190 Sum_probs=30.1
Q ss_pred HHHHcCCCccHHHHHHHHHHHCCCCCChhh-------HHHHHHHHH--ccCChHHHHHHHHHH
Q 046803 79 IRNSKANFSTDSLLFYRRMIVSNISPSNYT-------FSAVIKSCA--HLSILNLGRAVHCHV 132 (580)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~a~~--~~~~~~~a~~~~~~~ 132 (580)
...++.|+.+....+++.+...|..++... .+.+..|.. +.|+.+-++.+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344556777777777776666665555332 233443332 456666666555543
No 303
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.84 E-value=1.6e+02 Score=25.20 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=42.4
Q ss_pred HHHHHHHHH---hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCC-----hHHHHHHHHHHHHcCCC
Q 046803 175 WNSMISGYE---QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD-----IDLGRWVHEFIVGQGLD 239 (580)
Q Consensus 175 ~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~~~~~~~ 239 (580)
.-.+|+++. +..+++.|+-.+.+|++.| .|....-..++-+....|. +..|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 334556654 5689999999999999999 7766666666667666663 23444455555555643
No 304
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=33.49 E-value=8.2 Score=19.84 Aligned_cols=14 Identities=36% Similarity=1.028 Sum_probs=10.0
Q ss_pred ccccCccc--cCCCCC
Q 046803 567 HHFKRGSC--SCLDYW 580 (580)
Q Consensus 567 h~~~~g~c--sc~~~w 580 (580)
-+|.+|.| .|++-|
T Consensus 7 v~fgngfcgdncgnsw 22 (27)
T 2hgo_A 7 VNFGNGFCGDNCGNSW 22 (27)
T ss_dssp EEETTTEEECSSSCEE
T ss_pred EeecCccccCCcCCcc
Confidence 36788888 577766
No 305
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=33.44 E-value=87 Score=22.81 Aligned_cols=61 Identities=11% Similarity=0.061 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcc
Q 046803 24 LQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFST 88 (580)
Q Consensus 24 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 88 (580)
...|...+.+.|+-... -...+. +.....+.|.++++.++.++..+|..++.++.+.+...
T Consensus 24 v~~lld~L~~~~vlt~~-~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTIS-EEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSSCHH-HHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCCCHH-HHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 44566666666654322 222222 12346778888888888888888888888888776543
No 306
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=33.18 E-value=2.6e+02 Score=24.82 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=10.0
Q ss_pred cCCChHHHHHHHHHHHhcCC
Q 046803 269 SELNVIAWTAMISGYGMHGY 288 (580)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~ 288 (580)
..++...-...+.++.+.|+
T Consensus 202 ~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 202 QDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp TCSCHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHHhCC
Confidence 34444444445555555554
No 307
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=32.93 E-value=3.2e+02 Score=25.83 Aligned_cols=28 Identities=4% Similarity=0.146 Sum_probs=21.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCCCC
Q 046803 144 QAALVNFYAKSNNVDVARKVFDRMPDKS 171 (580)
Q Consensus 144 ~~~li~~y~~~g~~~~A~~~f~~~~~~~ 171 (580)
..++|.=|...++.++|...++++..+.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 4567777888888888888888887653
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.58 E-value=2e+02 Score=23.30 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=37.6
Q ss_pred hhHHhhHhhhcCCHHHHHHHHHhccCCC---hHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCC
Q 046803 245 ATSLINMYARCGNVSKAREIFDMMSELN---VIAWTAMISGYGMHGY--GTEAVELFHRMRAHGVRP 306 (580)
Q Consensus 245 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 306 (580)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567777888888888888888876542 2233344444444322 345666677776655443
No 309
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.75 E-value=1.6e+02 Score=25.18 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=6.9
Q ss_pred ccCChhHHHHHHcc
Q 046803 52 DAGFITYAQRIFFC 65 (580)
Q Consensus 52 ~~~~~~~A~~~f~~ 65 (580)
..|+++....+++.
T Consensus 18 ~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 18 QYGIYERCRELVEA 31 (240)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred HcCChHHHHHHHHc
Confidence 44555555555543
No 310
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=30.63 E-value=12 Score=22.49 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=9.2
Q ss_pred ccccCCcchhh
Q 046803 536 NLRMCVDCHSA 546 (580)
Q Consensus 536 ~l~~~~~~~~~ 546 (580)
++|+|.+|+.-
T Consensus 16 ~YRvC~~CgkP 26 (44)
T 2lo3_A 16 QYRVCEKCGKP 26 (44)
T ss_dssp CEEECTTTCCE
T ss_pred cchhhcccCCc
Confidence 69999999853
No 311
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=29.37 E-value=22 Score=25.74 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=24.8
Q ss_pred CCChHHHHHHHHHHHHHHHHcCccCCccccc
Q 046803 467 HPNTNEIYQYLDELMGRCREAGYVPESESAM 497 (580)
Q Consensus 467 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~ 497 (580)
.++..+++..+++-..+++..|+.||...+-
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDIiL~G 42 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDIILFG 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEEc
Confidence 3456678888888899999999999986543
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.21 E-value=5.7e+02 Score=27.94 Aligned_cols=127 Identities=9% Similarity=-0.037 Sum_probs=70.0
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHH
Q 046803 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226 (580)
Q Consensus 147 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 226 (580)
++..+...|..+-|.++..-.+. +...--.+..+|...|++++|...|++.- .|+.++...... .+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 66667778888888887776665 44433457788899999999999998764 234322111000 0000
Q ss_pred HHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc----CCCh----HHHHHHHHHHHhcC
Q 046803 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS----ELNV----IAWTAMISGYGMHG 287 (580)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g 287 (580)
..++... +. -.....-|.-++..+-+.+.++.+.++-+... ..|. ..|+.++.+.+..|
T Consensus 884 ~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0011000 00 01122356667777777777776665544332 2222 35666666665443
No 313
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.02 E-value=2.6e+02 Score=23.84 Aligned_cols=66 Identities=6% Similarity=-0.009 Sum_probs=38.3
Q ss_pred hhHHHHHHHH---HcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC-----hHHHHHHHHHHHHhCCC
Q 046803 72 FLFNTLIIRN---SKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI-----LNLGRAVHCHVFVSGYD 138 (580)
Q Consensus 72 ~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~~~~g~~ 138 (580)
...-.+|+++ .+..+++.|+-.+.+|++.| .|....=..++.+.-..|. +..|...++.....|.+
T Consensus 12 d~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 12 DAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3444456665 45688999999999999998 5544433344444433332 22344445555555643
No 314
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.97 E-value=1.5e+02 Score=23.68 Aligned_cols=45 Identities=11% Similarity=0.013 Sum_probs=22.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC
Q 046803 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221 (580)
Q Consensus 177 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 221 (580)
.++..+...+..-.|.++++.+.+.+...+..|....|+.+...|
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 344444444444455555555555444444455555555554444
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.55 E-value=1.7e+02 Score=24.26 Aligned_cols=16 Identities=6% Similarity=-0.081 Sum_probs=8.8
Q ss_pred hccCChhHHHHHHccC
Q 046803 51 CDAGFITYAQRIFFCI 66 (580)
Q Consensus 51 ~~~~~~~~A~~~f~~~ 66 (580)
+..++.+....+++.-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 3455666666665543
No 316
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=27.18 E-value=1.8e+02 Score=29.16 Aligned_cols=78 Identities=14% Similarity=0.038 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHc-CCCCCHHHHHHHHHHH
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVI-GEKPAPAVWTAMLGAC 387 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~ll~~~ 387 (580)
++..|.........++.|..+|..+... .| +-..|+.|.-.....|+.-+|.-.|.+.+ -..|-+.+..+|...+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~---~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHh---CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 3344445555667788999999988743 45 47788888888888898888888776776 4457788888888777
Q ss_pred Hhc
Q 046803 388 KMH 390 (580)
Q Consensus 388 ~~~ 390 (580)
.+.
T Consensus 231 ~~~ 233 (497)
T 1ya0_A 231 SKA 233 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 317
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.11 E-value=2e+02 Score=24.51 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=33.9
Q ss_pred HHHHHHHH---hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC
Q 046803 176 NSMISGYE---QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221 (580)
Q Consensus 176 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 221 (580)
-.+|+++. +..+++.|+-.+.+|++.|-.|....-..++-+....|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34566654 46899999999999999987777666666666665555
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.97 E-value=4.6e+02 Score=28.75 Aligned_cols=48 Identities=4% Similarity=-0.092 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcC
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFGRAG 358 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g 358 (580)
-|..++..+-+.+.++.+.++-+.+.+... ..| ...|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 677888888889999988888877775322 112 345666777666554
No 319
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=26.71 E-value=1.7e+02 Score=28.28 Aligned_cols=17 Identities=6% Similarity=0.260 Sum_probs=8.6
Q ss_pred HHHhCCCHHHHHHHHcc
Q 046803 150 FYAKSNNVDVARKVFDR 166 (580)
Q Consensus 150 ~y~~~g~~~~A~~~f~~ 166 (580)
..++.|+.+-+..+++.
T Consensus 86 ~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 86 CAARIGHTNMVKLLLEN 102 (437)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhC
Confidence 34445555555555544
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.17 E-value=2e+02 Score=22.88 Aligned_cols=60 Identities=5% Similarity=-0.062 Sum_probs=29.5
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 046803 97 MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157 (580)
Q Consensus 97 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 157 (580)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 445565554432 233344434444445666666666555444444444444555555543
No 321
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.67 E-value=2.9e+02 Score=23.43 Aligned_cols=20 Identities=0% Similarity=-0.034 Sum_probs=10.4
Q ss_pred HhCCChHHHHHHHHHHHHcC
Q 046803 218 AQLGDIDLGRWVHEFIVGQG 237 (580)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~ 237 (580)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 44455555555555555544
No 322
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.21 E-value=95 Score=22.88 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHH
Q 046803 256 GNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAV 293 (580)
Q Consensus 256 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 293 (580)
...+.|.++++.++++...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887767665543
No 323
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.84 E-value=2e+02 Score=23.05 Aligned_cols=61 Identities=10% Similarity=0.079 Sum_probs=33.1
Q ss_pred HHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 046803 96 RMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157 (580)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 157 (580)
.+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345566664433 2234445544555566777777777766555555444455666666644
No 324
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=24.25 E-value=1.9e+02 Score=28.98 Aligned_cols=78 Identities=9% Similarity=0.001 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 423 (580)
...+|.+...-...++.|...|.++....|+ ...|+.|.-.....|+.-+|.-.|-+.+....+.+.+..+|...+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 3445666666667778888888777777775 66788777777777777777777777776655556777777666654
No 325
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.16 E-value=3.4e+02 Score=23.58 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCC-CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhCCChHHHHHHHHHHH
Q 046803 157 VDVARKVFDRMPD-KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST-TCVCVLAACAQLGDIDLGRWVHEFIV 234 (580)
Q Consensus 157 ~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~ 234 (580)
++.+.+.|..... +|-.=|--+=--|+. ..+++.++|..|...|+--... -|......+...|++.+|.++|..-+
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~Ya~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQYVN--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHT--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHH--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q ss_pred HcCCCC
Q 046803 235 GQGLDV 240 (580)
Q Consensus 235 ~~~~~~ 240 (580)
+.+-.|
T Consensus 178 ~~~A~P 183 (223)
T 4aez_C 178 RMKAKP 183 (223)
T ss_dssp HHTCBS
T ss_pred HcCCcc
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.97 E-value=2.1e+02 Score=22.95 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC
Q 046803 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221 (580)
Q Consensus 176 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 221 (580)
..++..+...+..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344444444445555555555555444445555555555555444
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.90 E-value=5.3e+02 Score=25.41 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChhHHHHHHH
Q 046803 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFN 196 (580)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 196 (580)
.+.+.|.++ +.+.|++--...|..-.+.+...|++++|.++--..+. ++..+.+.+-..-..-|+..--+.+|.
T Consensus 343 ~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 455544443 45566666666666667778888888888888766654 344554444433334455555666666
Q ss_pred HHHHCCCCCChhHHHHHHHHHHhCCChHH
Q 046803 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDL 225 (580)
Q Consensus 197 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 225 (580)
.+.+.| +.+..--.-+.+.-...|+.+.
T Consensus 420 ~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~l 447 (494)
T 1bpo_A 420 ILLDQG-QLNKYESLELCRPVLQQGRKQL 447 (494)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhccC-ccchHHhhHHhHHHHhccHHHH
Confidence 666555 3343322333333344444443
No 328
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.33 E-value=4.4e+02 Score=24.30 Aligned_cols=130 Identities=8% Similarity=0.054 Sum_probs=76.5
Q ss_pred CccHHHHHHHHHHHC-C----CCCChhhHHH---HHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 046803 86 FSTDSLLFYRRMIVS-N----ISPSNYTFSA---VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157 (580)
Q Consensus 86 ~~~~A~~~~~~m~~~-g----~~p~~~t~~~---ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 157 (580)
+-++|..+|..+... + ..|+...... .+..+.+.-+ -+++..+.+.|+.|......-++..+++.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456899999887653 2 2344322221 1222222222 35778888889999888889999999988889
Q ss_pred HHHHHHHccCCC--CChhHHHH--HHH----HHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCC
Q 046803 158 DVARKVFDRMPD--KSVVAWNS--MIS----GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222 (580)
Q Consensus 158 ~~A~~~f~~~~~--~~~~~~~~--li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 222 (580)
+.+.++++.+.. .....+-+ ++. ...+..++++.+.+++..... .+......++.-......
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~---~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN---LGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhCCc
Confidence 999999987643 22222222 111 123345788888887764321 234455555544444444
No 329
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.20 E-value=2.7e+02 Score=21.70 Aligned_cols=63 Identities=13% Similarity=0.195 Sum_probs=38.6
Q ss_pred hhHHhhHhhhcCCHHHHHHHHHhccCCCh---HHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCC
Q 046803 245 ATSLINMYARCGNVSKAREIFDMMSELNV---IAWTAMISGYGMHGY--GTEAVELFHRMRAHGVRPN 307 (580)
Q Consensus 245 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd 307 (580)
.+.++.-|...|+.++|.+.++++..|.- .....+..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45677778888888888888888765422 233344444444432 3456667777766655433
No 330
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.18 E-value=2.6e+02 Score=24.11 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHH---hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCC-----hHHHHHHHHHHHHcCCC
Q 046803 171 SVVAWNSMISGYE---QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD-----IDLGRWVHEFIVGQGLD 239 (580)
Q Consensus 171 ~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~~~~~~~ 239 (580)
+...+-.+|+++. +..+++.|+-.+.+|++.|-.|....-..++-+....|. +..|...+......|.|
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3344445666664 468999999999999999987777776777777666553 23445555555555643
No 331
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.17 E-value=1.6e+02 Score=27.61 Aligned_cols=215 Identities=11% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChh
Q 046803 110 SAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189 (580)
Q Consensus 110 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 189 (580)
.+.|...+..|+.+..+.+++. ...+........+.+...+..|+.+-+..+++.-...+...-.+.+..-+..|+.+
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~ 98 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTD 98 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHH
Q ss_pred HHHHHHHHHHHCCCCCCh--------------------hHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCcHHHhhHH
Q 046803 190 EAIGLFNLMRDFGVNPDS--------------------TTCVCVLAACAQLG-DIDLGRWVHEFIVGQGLDVNVVLATSL 248 (580)
Q Consensus 190 ~A~~~~~~m~~~g~~p~~--------------------~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 248 (580)
-+..+++.....|..|+. ...+.+..++.... +.+-++.+++. ...+........+.
T Consensus 99 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~--ga~~~~~d~~g~t~ 176 (364)
T 3ljn_A 99 LVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL--GASPTAKDKADETP 176 (364)
T ss_dssp HHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH--TCCTTCCCTTSCCH
T ss_pred HHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCCcccCCCCCCH
Q ss_pred hhHhhhcCCHHHHHHHHHh--------ccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHH
Q 046803 249 INMYARCGNVSKAREIFDM--------MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV--AVLSAC 318 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~a~ 318 (580)
+...+..|+.+-+..+++. +...|..-++.|..+..... .++.+.+.+.|..++..... +-+...
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW-----EDVAMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC-----HHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q ss_pred HhcCCHHHHHHHHHH
Q 046803 319 AHAGLVQEGHRVFAS 333 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~ 333 (580)
+..|..+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
No 332
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=23.16 E-value=3e+02 Score=23.35 Aligned_cols=21 Identities=10% Similarity=0.013 Sum_probs=10.6
Q ss_pred HhhHhhhcCCHHHHHHHHHhc
Q 046803 248 LINMYARCGNVSKAREIFDMM 268 (580)
Q Consensus 248 li~~y~~~g~~~~A~~~~~~~ 268 (580)
-+......|+...+.++.+.+
T Consensus 213 ~l~~A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 213 PLQCASLNSQVWSALQMSKAL 233 (237)
T ss_dssp HHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555443
No 333
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.03 E-value=3.2e+02 Score=22.48 Aligned_cols=83 Identities=12% Similarity=0.009 Sum_probs=54.2
Q ss_pred hhHHHHHHccCCC--CChh---hHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhh-HHHHHHHHHccCChHHHHHHH
Q 046803 56 ITYAQRIFFCIPS--PDSF---LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYT-FSAVIKSCAHLSILNLGRAVH 129 (580)
Q Consensus 56 ~~~A~~~f~~~~~--~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~ 129 (580)
++.+.+.|...+. .|+. .|-..+.. .+++.++|..|...|+--.... |..-...+...|++..|..+|
T Consensus 46 LErc~~~f~~~~~YknD~RyLklWl~ya~~------~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy 119 (164)
T 2wvi_A 46 LERAVEALQGEKRYYSDPRFLNLWLKLGRL------CNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIF 119 (164)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHHH------CSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhhhhhccCHHHHHHHHHHHHh------cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4566667765553 3433 34433333 2457788999988877655443 455555566788999999999
Q ss_pred HHHHHhCCCCchHHH
Q 046803 130 CHVFVSGYDSDLHVQ 144 (580)
Q Consensus 130 ~~~~~~g~~~~~~~~ 144 (580)
..-++.+..|-...-
T Consensus 120 ~~Gi~~~A~P~~~L~ 134 (164)
T 2wvi_A 120 QEGIQQKAEPLERLQ 134 (164)
T ss_dssp HHHHHTTCBSHHHHH
T ss_pred HHHHHcCCCcHHHHH
Confidence 998888877765443
No 334
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.50 E-value=1.2e+02 Score=26.01 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=10.4
Q ss_pred HHHHHhCCCHHHHHHHHcc
Q 046803 148 VNFYAKSNNVDVARKVFDR 166 (580)
Q Consensus 148 i~~y~~~g~~~~A~~~f~~ 166 (580)
+...+..|+.+-+..+++.
T Consensus 81 L~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334455666666666554
No 335
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.38 E-value=1.4e+02 Score=25.45 Aligned_cols=19 Identities=0% Similarity=0.266 Sum_probs=9.7
Q ss_pred HHHHHhCCCHHHHHHHHcc
Q 046803 148 VNFYAKSNNVDVARKVFDR 166 (580)
Q Consensus 148 i~~y~~~g~~~~A~~~f~~ 166 (580)
+...+..|+.+-+..+++.
T Consensus 80 L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 80 LHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred hHHHHHcCCHHHHHHHHHc
Confidence 3334445566555555543
No 336
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.38 E-value=1.7e+02 Score=25.94 Aligned_cols=58 Identities=5% Similarity=-0.152 Sum_probs=31.5
Q ss_pred hHHHHHHHHHcCCCccHHHHHHHHHHHCCCCC-------ChhhHHHHHHHHH--ccCChHHHHHHHHH
Q 046803 73 LFNTLIIRNSKANFSTDSLLFYRRMIVSNISP-------SNYTFSAVIKSCA--HLSILNLGRAVHCH 131 (580)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------~~~t~~~ll~a~~--~~~~~~~a~~~~~~ 131 (580)
-++.|.. .++.|+.+....+++.....+... |..-.+.|..|+. +.|+.+-++.+++.
T Consensus 13 g~t~L~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 13 DRRSIFD-AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp CHHHHHH-HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred cchHHHH-HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 3444433 455677777777777666555332 2233444555543 34666666555554
No 337
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=22.01 E-value=3.5e+02 Score=22.58 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=46.8
Q ss_pred hcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--C--------------CH-HHHHHHHH
Q 046803 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR--P--------------NN-VTFVAVLS 316 (580)
Q Consensus 254 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--------------d~-~t~~~ll~ 316 (580)
-.|.+..+.-++.....-...-|.. -+|-+..++..|+..++.+....+. | |. .-++.+..
T Consensus 45 yngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp HTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 3567776666665543222222322 2455677788888888777754443 1 22 23455556
Q ss_pred HHHhcCCHHHHHHHHHHh
Q 046803 317 ACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~ 334 (580)
.|...|+.++|...+..-
T Consensus 123 lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhhh
Confidence 777888888888877653
No 338
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.80 E-value=69 Score=21.19 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046803 87 STDSLLFYRRMIVSNISPSNYTFSAVIKSC 116 (580)
Q Consensus 87 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 116 (580)
.++|.+.|.+|++..-.+..-||..+++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 468889998887764444557888888887
No 339
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.77 E-value=2e+02 Score=24.45 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=6.0
Q ss_pred ccCChhHHHHHHc
Q 046803 52 DAGFITYAQRIFF 64 (580)
Q Consensus 52 ~~~~~~~A~~~f~ 64 (580)
..|+++....+++
T Consensus 15 ~~g~~~~v~~ll~ 27 (231)
T 3aji_A 15 YSGKLDELKERIL 27 (231)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 4444444444443
No 340
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.31 E-value=3e+02 Score=27.55 Aligned_cols=65 Identities=11% Similarity=0.175 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC--CCC---HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGL--LPG---VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 375 (580)
..++.++..|.+.+.+++|..+..+.. +.. .++ ...+-.+...+.-.+++.+|.+.+..++...|
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 567788889999999999999988763 111 122 11222356677788999999999978876555
No 341
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.01 E-value=1.1e+02 Score=23.63 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=28.2
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHh
Q 046803 93 FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS 135 (580)
Q Consensus 93 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 135 (580)
+|+.+....+.|+...-..-+..+...++++.|.++|..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555555556555544444455566778999999999888753
No 342
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.73 E-value=1.8e+02 Score=23.82 Aligned_cols=69 Identities=7% Similarity=0.068 Sum_probs=43.5
Q ss_pred cHHHHHHHH-HHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHhCCCH
Q 046803 88 TDSLLFYRR-MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS--GYDSDLHVQAALVNFYAKSNNV 157 (580)
Q Consensus 88 ~~A~~~~~~-m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~ 157 (580)
+.+++-+.+ +.+.|++++.. =..++..+...+..-.|.++++.+.+. +...+..|--.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 445555544 34557776543 345566666666777788888888877 6555555444455677777754
No 343
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.46 E-value=1.3e+02 Score=23.76 Aligned_cols=7 Identities=14% Similarity=0.340 Sum_probs=2.6
Q ss_pred CCHHHHH
Q 046803 256 GNVSKAR 262 (580)
Q Consensus 256 g~~~~A~ 262 (580)
|+.+-+.
T Consensus 112 ~~~~~v~ 118 (156)
T 1bd8_A 112 GHTAVVS 118 (156)
T ss_dssp TCHHHHH
T ss_pred ChHHHHH
Confidence 3333333
No 344
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.38 E-value=2.2e+02 Score=28.60 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN-------PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 377 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
...++.++..|...+.++.|..+..+.. .|.+ ...+..++.++.-.+++.+|.+.+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4456677777777777777777776663 2321 12233456777777777777777666544
Done!