BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046807
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 159 bits (403), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 121/177 (68%), Gaps = 6/177 (3%)
Query: 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDD 60
LGL Y FE++IR+ L +S K +L+AT+L FRLLRQHG+ VSQ+ F+GFKD
Sbjct: 77 LGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQ 136
Query: 61 KGGFICN---DFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAE 117
G F+ N D K I+SL+EAS+ + EGE+I++EA F HLKE +S+ K G +AE
Sbjct: 137 NGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKE--LSEEKIGKE-LAE 193
Query: 118 QAKRALELPLHWKVPMLEARWFIDVYEKREDKNHLLLELAKMEFNVLQAIYQEELKD 174
Q ALELPLH + LEA W I+ Y K+ED N +LLELA +++N++Q++YQ +L++
Sbjct: 194 QVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRE 250
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 120/182 (65%), Gaps = 7/182 (3%)
Query: 1 LGLAYHFETEIRKILHNIYNSNKDYN---WRKENLYATSLEFRLLRQHGYPVSQDVFNGF 57
LGL+ F+ EI++IL IYN +K ++ K +LY T+L FRLLRQHG+ +SQDVFN F
Sbjct: 67 LGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCF 126
Query: 58 KDDKG----GFICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDV 113
K++KG + D K ++ L+EAS+ +GE +E A +F +K L++ + + D
Sbjct: 127 KNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDE 186
Query: 114 FVAEQAKRALELPLHWKVPMLEARWFIDVYEKREDKNHLLLELAKMEFNVLQAIYQEELK 173
+ + +L+LPLHW++ +EARWFID Y +R D N L+ ELAK+ FN++QA +Q+ELK
Sbjct: 187 NLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELK 246
Query: 174 DF 175
D
Sbjct: 247 DL 248
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 142 bits (358), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 121/179 (67%), Gaps = 11/179 (6%)
Query: 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDD 60
LG++ HFE EI +IL++ Y +N + + R +LY+T+L FRLLRQ+ + VSQ+VF+ FK+
Sbjct: 96 LGISCHFEREIVEILNSKYYTNNEIDER--DLYSTALRFRLLRQYDFSVSQEVFDCFKNA 153
Query: 61 KGG----FICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHL-KEVMISKSKQGDVFV 115
KG + +D + ++ L+EAS+ S +GE + A F +K L K V++ K D+ +
Sbjct: 154 KGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDK----DINL 209
Query: 116 AEQAKRALELPLHWKVPMLEARWFIDVYEKREDKNHLLLELAKMEFNVLQAIYQEELKD 174
+RALELP HW+V M AR FID Y++R D N +LELAK++FN++QA +Q+ELK+
Sbjct: 210 LSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKE 268
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 113/178 (63%), Gaps = 10/178 (5%)
Query: 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDD 60
LG++YHF EI L NIY++N D + +LY TS+ FRLLR+HGY VS DVFN FKD+
Sbjct: 83 LGVSYHFTKEIEDELENIYHNNND---AENDLYTTSIRFRLLREHGYNVSCDVFNKFKDE 139
Query: 61 KGGF---ICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAE 117
+G F + +D + ++ L++ASY GE I++EA FT+ HL + S D ++E
Sbjct: 140 QGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASL----DHPLSE 195
Query: 118 QAKRALELPLHWKVPMLEARWFIDVYEKREDKNHLLLELAKMEFNVLQAIYQEELKDF 175
+ AL+ + +P +EAR ++ VY+ E N LLE AK++FN+LQ ++++EL +
Sbjct: 196 EVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEI 253
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 114/176 (64%), Gaps = 12/176 (6%)
Query: 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDD 60
LG++YHFE EI +IL IYN N + N +L ++L+FRLLRQHG+ +S ++F+ F+D+
Sbjct: 77 LGISYHFEKEIDEILDQIYNQNSNCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDE 132
Query: 61 KGGF---ICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAE 117
G F + +D +++L+EAS+ + I+E+A F++ HL+ S + + E
Sbjct: 133 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPLRE 188
Query: 118 QAKRALELPLHWKVPMLEARWFI-DVYEKREDKNHLLLELAKMEFNVLQAIYQEEL 172
Q ALE LH VP +E R+FI +Y+K + KN++LL AK++FN+LQ ++++EL
Sbjct: 189 QVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQEL 244
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 114/176 (64%), Gaps = 12/176 (6%)
Query: 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDD 60
LG++YHFE EI +IL IYN N + N +L ++L+FRLLRQHG+ +S ++F+ F+D+
Sbjct: 77 LGISYHFEKEIDEILDQIYNQNSNCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDE 132
Query: 61 KGGF---ICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAE 117
G F + +D +++L+EAS+ + I+E+A F++ HL+ S + + E
Sbjct: 133 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPLRE 188
Query: 118 QAKRALELPLHWKVPMLEARWFI-DVYEKREDKNHLLLELAKMEFNVLQAIYQEEL 172
Q ALE LH VP +E R+FI +Y+K + KN++LL AK++FN+LQ ++++EL
Sbjct: 189 QVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQEL 244
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 113/176 (64%), Gaps = 12/176 (6%)
Query: 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDD 60
LG++YHFE EI IL IYN N + N +L ++L+FRLLRQHG+ +S ++F+ F+D+
Sbjct: 77 LGISYHFEKEIDDILDQIYNQNSNCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDE 132
Query: 61 KGGF---ICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAE 117
G F + +D +++L+EAS+ + I+E+A F++ HL+ S + + E
Sbjct: 133 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPLRE 188
Query: 118 QAKRALELPLHWKVPMLEARWFI-DVYEKREDKNHLLLELAKMEFNVLQAIYQEEL 172
Q ALE LH VP +E R+FI +Y+K + KN++LL AK++FN+LQ ++++EL
Sbjct: 189 QVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQEL 244
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 120/181 (66%), Gaps = 9/181 (4%)
Query: 1 LGLAYHFETEIRKILHNIYNSNKDYN--WRKE--NLYATSLEFRLLRQHGYPVSQDVFNG 56
+GL+ HF+ E ++IL +IY + Y + KE +LY+TSL FRLLR+HG+ V+Q+VF+
Sbjct: 63 MGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDS 122
Query: 57 FKDDKGGF---ICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDV 113
FK+++G F + +D + ++ L+EAS+ EGE+ +E A +F +K L+E + GD+
Sbjct: 123 FKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDL 182
Query: 114 FVAEQAKRALELPLHWKVPMLEARWFIDVYEKREDKNHLLLELAKMEFNVLQAIYQEELK 173
+ +L++PLHW++ A +I+ Y KR D N ++LELA ++ N++QA +QEELK
Sbjct: 183 LT--RIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELK 240
Query: 174 D 174
+
Sbjct: 241 E 241
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 113/176 (64%), Gaps = 12/176 (6%)
Query: 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDD 60
LG++YHFE EI IL IYN N + N +L ++L+FRLLRQHG+ +S ++F+ F+D+
Sbjct: 79 LGISYHFEKEIDDILDQIYNQNSNCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDE 134
Query: 61 KGGF---ICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAE 117
G F + +D +++L+EAS+ + I+E+A F++ HL+ S + + E
Sbjct: 135 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPLRE 190
Query: 118 QAKRALELPLHWKVPMLEARWFI-DVYEKREDKNHLLLELAKMEFNVLQAIYQEEL 172
Q ALE LH VP +E R+FI +Y+K + KN++LL AK++FN+LQ ++++EL
Sbjct: 191 QVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQEL 246
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 113/176 (64%), Gaps = 12/176 (6%)
Query: 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDD 60
LG++YHFE EI IL IYN N + N +L ++L+FRLLRQHG+ +S ++F+ F+D+
Sbjct: 64 LGISYHFEKEIDDILDQIYNQNSNCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDE 119
Query: 61 KGGF---ICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAE 117
G F + +D +++L+EAS+ + I+E+A F++ HL+ S + + E
Sbjct: 120 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPLRE 175
Query: 118 QAKRALELPLHWKVPMLEARWFI-DVYEKREDKNHLLLELAKMEFNVLQAIYQEEL 172
Q ALE LH VP +E R+FI +Y+K + KN++LL AK++FN+LQ ++++EL
Sbjct: 176 QVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQEL 231
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 113/176 (64%), Gaps = 12/176 (6%)
Query: 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDD 60
LG++YHFE EI IL IYN N + N +L ++L+FRLLRQHG+ +S ++F+ F+D+
Sbjct: 79 LGISYHFEKEIDDILDQIYNQNSNCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDE 134
Query: 61 KGGF---ICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAE 117
G F + +D +++L+EAS+ + I+E+A F++ HL+ S + + E
Sbjct: 135 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPLRE 190
Query: 118 QAKRALELPLHWKVPMLEARWFI-DVYEKREDKNHLLLELAKMEFNVLQAIYQEEL 172
Q ALE LH VP +E R+FI +Y+K + KN++LL AK++FN+LQ ++++EL
Sbjct: 191 QVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQEL 246
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 113/176 (64%), Gaps = 12/176 (6%)
Query: 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDD 60
LG++YHFE EI IL IYN N + N +L ++L+FRLLRQHG+ +S ++F+ F+D+
Sbjct: 77 LGISYHFEKEIDDILDQIYNQNSNCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDE 132
Query: 61 KGGF---ICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAE 117
G F + +D +++L+EAS+ + I+E+A F++ HL+ S + + E
Sbjct: 133 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPLRE 188
Query: 118 QAKRALELPLHWKVPMLEARWFI-DVYEKREDKNHLLLELAKMEFNVLQAIYQEEL 172
Q ALE LH VP +E R+FI +Y+K + KN++LL AK++FN+LQ ++++EL
Sbjct: 189 QVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQEL 244
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 113/176 (64%), Gaps = 12/176 (6%)
Query: 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDD 60
LG++YHFE EI IL IYN N + N +L ++L+FRLLRQHG+ +S ++F+ F+D+
Sbjct: 77 LGISYHFEKEIDDILDQIYNQNSNCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDE 132
Query: 61 KGGF---ICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAE 117
G F + +D +++L+EAS+ + I+E+A F++ HL+ S + + E
Sbjct: 133 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPLRE 188
Query: 118 QAKRALELPLHWKVPMLEARWFI-DVYEKREDKNHLLLELAKMEFNVLQAIYQEEL 172
Q ALE LH VP +E R+FI +Y+K + KN++LL AK++FN+LQ ++++EL
Sbjct: 189 QVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQEL 244
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 113/176 (64%), Gaps = 12/176 (6%)
Query: 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDD 60
LG++YHFE EI IL IYN N + N +L ++L+FRLLRQHG+ +S ++F+ F+D+
Sbjct: 77 LGISYHFEKEIDDILDQIYNQNSNCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDE 132
Query: 61 KGGF---ICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAE 117
G F + +D +++L+EAS+ + I+E+A F++ HL+ S + + E
Sbjct: 133 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPLRE 188
Query: 118 QAKRALELPLHWKVPMLEARWFI-DVYEKREDKNHLLLELAKMEFNVLQAIYQEEL 172
Q ALE LH VP +E R+FI +Y+K + KN++LL AK++FN+LQ ++++EL
Sbjct: 189 QVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQEL 244
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 113/205 (55%), Gaps = 34/205 (16%)
Query: 1 LGLAYHFETEIRKILHNIYN--SNKDYNWRKEN----LYATSLEFRLLRQHGYPVSQDVF 54
LG+ HFE EI++ L +Y + + W + N L T+L FRLLR H Y VS +F
Sbjct: 311 LGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIF 370
Query: 55 NGFKDDKGGFICN------DFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKS 108
+ FKD G FIC+ D +++L+ AS +F GE+I++EA F +K+L+E + KS
Sbjct: 371 DNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREAL-EKS 429
Query: 109 KQGDVF-----VAEQAKRALELPLHWKVPMLEARWFIDVYEKRED--------------K 149
+ + ++++ K AL+ H VP +EA+ + VY R D
Sbjct: 430 ETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVY--RPDYARIAKCVYKLPYVN 487
Query: 150 NHLLLELAKMEFNVLQAIYQEELKD 174
N LEL K++FN++Q+I+QEE+K+
Sbjct: 488 NEKFLELGKLDFNIIQSIHQEEMKN 512
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 109/198 (55%), Gaps = 27/198 (13%)
Query: 1 LGLAYHFETEIRKILHNIYN--SNKDYNWRKENLY----ATSLEFRLLRQHGYPVSQDVF 54
LG+ HF+ EI+ L +Y S + W +++L T+L R LR HGY VS DV
Sbjct: 259 LGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVL 318
Query: 55 NGFKDDKGGFICN------DFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISK- 107
N FKD+ G F + + + +++L AS +F E M++A +F +L+E + +K
Sbjct: 319 NNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKI 378
Query: 108 SKQGDVFVAEQAKRALELPLHWKVPMLEARWFIDVYE-----KRED-------KNHLLLE 155
S +F ++ + +E P H +P LEAR +ID Y+ +R+ N LE
Sbjct: 379 STNTKLF--KEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLE 436
Query: 156 LAKMEFNVLQAIYQEELK 173
LAK++FN++Q+++QEELK
Sbjct: 437 LAKLDFNIVQSLHQEELK 454
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 36/207 (17%)
Query: 1 LGLAYHFETEIRKILHNIYN--SNKDYNWRKENLYA----TSLEFRLLRQHGYPVSQDVF 54
LG+ HF+ EI++ L +Y+ + W +EN T++ R+LR HGY VS DV
Sbjct: 283 LGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVL 342
Query: 55 NGFKDDKGGFIC------NDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKS 108
F+D+ G F C ++++++ S+ SF GE+IMEEA T ++L+ +
Sbjct: 343 KTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNAL---- 398
Query: 109 KQGDVF--------VAEQAKRALELPLHWKVPMLEARWFID------------VYEKRED 148
+ D F + + + AL+ P H +P LEAR +I+ VY
Sbjct: 399 ENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYI 458
Query: 149 KNHLLLELAKMEFNVLQAIYQEELKDF 175
N LELAK++FN +Q+I+Q EL+D
Sbjct: 459 SNEKYLELAKLDFNKVQSIHQTELQDL 485
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 42/206 (20%)
Query: 1 LGLAYHFETEIRKILHNI--YNSNKDYNWRK----ENLYATSLEFRLLRQHGYPVSQDVF 54
LG++ +FE EI++ L + Y ++ W + +++ T++ FRLLRQHGY VS DVF
Sbjct: 258 LGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVF 317
Query: 55 NGFKDDKGGFIC------NDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEV----- 103
F + +G F C + +L+ AS +F E I++ A +F+ +L E
Sbjct: 318 KNF-EKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREE 376
Query: 104 -----MISKSKQGDVFVAEQAKRALELPLHWKVPMLEARWFIDVYEKRED---------- 148
+I K G++ ALE+P + +P +E R++ID Y D
Sbjct: 377 LIDKWIIMKDLPGEIGF------ALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRM 430
Query: 149 ---KNHLLLELAKMEFNVLQAIYQEE 171
N+ LELAK ++N QA +Q E
Sbjct: 431 PYVNNNGYLELAKQDYNNCQAQHQLE 456
>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17
Complexed With Bovine Pancreatic Trypsin Inhibitor
(Bpti)
Length = 231
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 59 DDKGGFICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHL 100
DDKGG+ C + + S Y F G S++ + W ++ H
Sbjct: 8 DDKGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHC 49
>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic
Trypsinogen-Bpti Complex
Length = 231
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 59 DDKGGFICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHL 100
DDKGG+ C + + S Y F G S++ + W ++ H
Sbjct: 8 DDKGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHC 49
>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 231
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 59 DDKGGFICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHL 100
DDKGG+ C + + S Y F G S++ + W ++ H
Sbjct: 8 DDKGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHC 49
>pdb|2EL8|A Chain A, Solution Structure Of The Human Stap2 Sh2 Domain
Length = 118
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 106 SKSKQGDVFVAEQAKRALELP-LHWKVPMLEARWFIDVY 143
S G+V E+A+RALE P KV LEA+ ++ Y
Sbjct: 2 SSGSSGEVLAKEEARRALETPSCFLKVSRLEAQLLLERY 40
>pdb|4B0R|A Chain A, Structure Of The Deamidase-Depupylase Dop Of The
Prokaryotic Ubiquitin-Like Modification Pathway
pdb|4B0S|A Chain A, Structure Of The Deamidase-depupylase Dop Of The
Prokaryotic Ubiquitin-like Modification Pathway In
Complex With Atp
Length = 506
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 109 KQGDVFVAEQAKRALELPLHWKV 131
K G+ +AE A+RA +LP+ W +
Sbjct: 116 KAGERIMAEAARRAADLPMGWTI 138
>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTK|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTL|M Chain M, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTM|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
Length = 242
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 58 KDDK--GGFICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHL 100
+DDK GG+ C + + + S Y F G S++ E W ++ H
Sbjct: 17 EDDKIVGGYECKPYSQPHQVSLNSGYHFCGGSLVNENWVVSAAHC 61
>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A
Second Crystal Form
Length = 237
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 58 KDDK--GGFICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKHL 100
+DDK GG+ C + + + S Y F G S++ E W ++ H
Sbjct: 12 EDDKIVGGYECKAYSQAHQVSLNSGYHFCGGSLVNENWVVSAAHC 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,398,942
Number of Sequences: 62578
Number of extensions: 214839
Number of successful extensions: 660
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 46
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)