Query 046807
Match_columns 175
No_of_seqs 134 out of 725
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 07:36:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ong_A 4S-limonene synthase; m 100.0 7E-67 2.4E-71 478.8 18.2 173 1-175 63-242 (543)
2 1n1b_A (+)-bornyl diphosphate 100.0 1.6E-66 5.6E-71 477.0 15.0 174 1-175 67-248 (549)
3 3n0f_A Isoprene synthase; terp 100.0 2.5E-66 8.5E-71 476.1 14.2 172 1-175 77-251 (555)
4 2j5c_A 1,8-cineole synthase; t 100.0 3E-66 1E-70 476.9 14.3 169 1-175 96-269 (569)
5 3g4d_A (+)-delta-cadinene synt 100.0 1.5E-65 5.3E-70 470.7 17.9 168 1-175 83-253 (554)
6 3m00_A Aristolochene synthase; 100.0 1.5E-65 5.2E-70 470.4 17.2 167 1-175 79-249 (550)
7 3p5p_A Taxadiene synthase; cla 100.0 3E-61 1E-65 455.5 18.3 173 1-175 259-456 (764)
8 3s9v_A Abietadiene synthase, c 100.0 6.7E-61 2.3E-65 454.2 18.4 173 1-175 283-485 (785)
9 3sdr_A Alpha-bisabolene syntha 100.0 5.6E-61 1.9E-65 456.3 15.4 175 1-175 311-513 (817)
10 3pya_A ENT-copalyl diphosphate 100.0 1.4E-59 4.6E-64 441.8 18.2 174 1-175 258-460 (727)
11 2kng_A Protein LSR2; DNA-bindi 41.6 14 0.00047 23.7 1.9 27 42-81 22-48 (55)
12 1taf_A TFIID TBP associated fa 26.8 32 0.0011 22.6 1.8 44 35-98 4-48 (68)
13 2yfw_B Histone H4, H4; cell cy 26.3 37 0.0013 23.8 2.3 44 36-99 33-77 (103)
14 1tzy_D Histone H4-VI; histone- 25.4 39 0.0013 23.6 2.3 44 35-98 32-76 (103)
15 4h62_V Mediator of RNA polymer 21.7 52 0.0018 18.1 1.7 19 2-20 5-23 (31)
No 1
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=7e-67 Score=478.83 Aligned_cols=173 Identities=40% Similarity=0.713 Sum_probs=159.6
Q ss_pred CCCccccHHHHHHHHHHHHhcCCCcc---cc-cCChhhhHHHHHHHHhcCCCcccccccccccCCCcc---cccchHHHH
Q 046807 1 LGLAYHFETEIRKILHNIYNSNKDYN---WR-KENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGF---ICNDFKEIM 73 (175)
Q Consensus 1 LGI~~hF~~EI~~~L~~i~~~~~~~~---~~-~~dl~~~AL~FRLLRqhGy~VS~Dvf~~F~d~~G~F---~~~d~~glL 73 (175)
|||+|||++||+++|++||+.+.... .. ..||++|||+|||||||||+||||||++|||++|+| +++||+|||
T Consensus 63 LGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL 142 (543)
T 2ong_A 63 MGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLL 142 (543)
T ss_dssp TTGGGTTHHHHHHHHHHHHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHH
T ss_pred CCchhhhHHHHHHHHHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHH
Confidence 89999999999999999998653211 11 469999999999999999999999999999999999 789999999
Q ss_pred HHHHhhcCCCCCccHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHhcCCCccCCchHHHHHhhHHHhhccCcccHHH
Q 046807 74 SLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQAKRALELPLHWKVPMLEARWFIDVYEKREDKNHLL 153 (175)
Q Consensus 74 ~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~l 153 (175)
||||||||++|||+|||||+.||+++|++++.++ +. +++|+++|+|||++||||++||+||||||+.|++++++|++|
T Consensus 143 ~Ly~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~-~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~l 220 (543)
T 2ong_A 143 QLYEASFLLTEGETTLESAREFATKFLEEKVNEG-GV-DGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVV 220 (543)
T ss_dssp HHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHSS-CS-SSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhcc-CC-CCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHH
Confidence 9999999999999999999999999999998332 32 678999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHhhcC
Q 046807 154 LELAKMEFNVLQAIYQEELKDF 175 (175)
Q Consensus 154 LelAklDFn~~Q~~hq~EL~~l 175 (175)
|||||+|||+||++||+||+++
T Consensus 221 LelAkldFn~~Q~~hq~El~~l 242 (543)
T 2ong_A 221 LELAILDLNIVQAQFQEELKES 242 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999864
No 2
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.6e-66 Score=477.00 Aligned_cols=174 Identities=47% Similarity=0.782 Sum_probs=157.8
Q ss_pred CCCccccHHHHHHHHHHHHhcCCCccc---ccCChhhhHHHHHHHHhcCCCcccccccccccCCC-cc---cccchHHHH
Q 046807 1 LGLAYHFETEIRKILHNIYNSNKDYNW---RKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKG-GF---ICNDFKEIM 73 (175)
Q Consensus 1 LGI~~hF~~EI~~~L~~i~~~~~~~~~---~~~dl~~~AL~FRLLRqhGy~VS~Dvf~~F~d~~G-~F---~~~d~~glL 73 (175)
|||+|||++||+++|++||+.+...+. ...||++|||+|||||||||+||||||++|+|++| +| +++||+|||
T Consensus 67 LGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL 146 (549)
T 1n1b_A 67 LGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGML 146 (549)
T ss_dssp TTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHH
T ss_pred CCchhhhHHHHHHHHHHHHhhhccccccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHH
Confidence 899999999999999999975421111 13699999999999999999999999999999999 99 789999999
Q ss_pred HHHHhhcCCCCCccHHHHHHHHHHHHHHHHHhhcC-CCCChhHHHHHHHhcCCCccCCchHHHHHhhHHHhhccCcccHH
Q 046807 74 SLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKS-KQGDVFVAEQAKRALELPLHWKVPMLEARWFIDVYEKREDKNHL 152 (175)
Q Consensus 74 ~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~-~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~ 152 (175)
|||||||+++|||+|||+|+.||+++|++++.++. +. +++|+++|+|||++||||++||+||||||+.|++++++|++
T Consensus 147 ~LY~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~ 225 (549)
T 1n1b_A 147 QLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEI-DENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPL 225 (549)
T ss_dssp HHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcccccC-CCcHHHHHHHHhcCchhcCchHHHHHHHHHHhcccccccHH
Confidence 99999999999999999999999999999983220 22 67899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHhhcC
Q 046807 153 LLELAKMEFNVLQAIYQEELKDF 175 (175)
Q Consensus 153 lLelAklDFn~~Q~~hq~EL~~l 175 (175)
||||||+|||+||++||+||+++
T Consensus 226 lLelAkldFn~~Q~~hq~El~~l 248 (549)
T 1n1b_A 226 IFELAKLNFNIIQATHQQELKDL 248 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999864
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=2.5e-66 Score=476.13 Aligned_cols=172 Identities=48% Similarity=0.769 Sum_probs=158.2
Q ss_pred CCCccccHHHHHHHHHHHHhcCCCcccccCChhhhHHHHHHHHhcCCCcccccccccccCCCcc---cccchHHHHHHHH
Q 046807 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGF---ICNDFKEIMSLHE 77 (175)
Q Consensus 1 LGI~~hF~~EI~~~L~~i~~~~~~~~~~~~dl~~~AL~FRLLRqhGy~VS~Dvf~~F~d~~G~F---~~~d~~glL~LYe 77 (175)
|||+|||++||+++|++||+......+...||++|||+|||||||||+||||||++|+|++|+| +.+||+|||+|||
T Consensus 77 LGi~~hF~~EI~~~L~~i~~~~~~~~~~~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYe 156 (555)
T 3n0f_A 77 LGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYE 156 (555)
T ss_dssp TTCGGGSHHHHHHHHHHHHHTCHHHHHTTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHH
T ss_pred cCchhhhHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHH
Confidence 8999999999999999999731111122479999999999999999999999999999999999 8899999999999
Q ss_pred hhcCCCCCccHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHhcCCCccCCchHHHHHhhHHHhhccCcccHHHHHHH
Q 046807 78 ASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQAKRALELPLHWKVPMLEARWFIDVYEKREDKNHLLLELA 157 (175)
Q Consensus 78 AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelA 157 (175)
|||+++|||+|||+|+.||+++|++++.+ .+ +++|+++|++||++||||++||+||||||+.|++++++|++||+||
T Consensus 157 As~l~~~gE~iLdeA~~Fs~~~L~~~~~~-~~--~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelA 233 (555)
T 3n0f_A 157 ASFLALEGENILDEARVFAISHLKELSEE-KI--GKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELA 233 (555)
T ss_dssp HHTTCCTTCHHHHHHHHHHHHHHHTCCHH-HH--CHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHHH
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHHhc-cC--CchHHHHHHHHhcCCcccCchHHHHHHHHHHhcccccccHHHHHHH
Confidence 99999999999999999999999986522 34 7889999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhcC
Q 046807 158 KMEFNVLQAIYQEELKDF 175 (175)
Q Consensus 158 klDFn~~Q~~hq~EL~~l 175 (175)
|+|||+||++||+||+++
T Consensus 234 KlDFN~~Q~~hq~EL~~l 251 (555)
T 3n0f_A 234 ILDYNMIQSVYQRDLRET 251 (555)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhHHHHHHH
Confidence 999999999999999864
No 4
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=3e-66 Score=476.91 Aligned_cols=169 Identities=45% Similarity=0.760 Sum_probs=156.9
Q ss_pred CCCccccHHHHHHHHHHHH-hcCCCcccccCChhhhHHHHHHHHhcCCCcccccccccccCCC-cc---cccchHHHHHH
Q 046807 1 LGLAYHFETEIRKILHNIY-NSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKG-GF---ICNDFKEIMSL 75 (175)
Q Consensus 1 LGI~~hF~~EI~~~L~~i~-~~~~~~~~~~~dl~~~AL~FRLLRqhGy~VS~Dvf~~F~d~~G-~F---~~~d~~glL~L 75 (175)
|||+|||++||+++|++|| +.+.+ ...||++|||+|||||||||+||||||++|+|++| +| +++||+|||||
T Consensus 96 LGi~~hFe~EI~~~L~~i~~~~~~~---~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~L 172 (569)
T 2j5c_A 96 LGISCHFEREIVEILNSKYYTNNEI---DERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQL 172 (569)
T ss_dssp HTCGGGGHHHHHHHHHHHTTSSCCS---CTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHH
T ss_pred CCchhhhHHHHHHHHHHHHHhccCc---ccCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHH
Confidence 7999999999999999999 74322 24799999999999999999999999999999999 99 78999999999
Q ss_pred HHhhcCCCCCccHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHhcCCCccCCchHHHHHhhHHHhhccCcccHHHHH
Q 046807 76 HEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQAKRALELPLHWKVPMLEARWFIDVYEKREDKNHLLLE 155 (175)
Q Consensus 76 YeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLe 155 (175)
||||||++|||+|||+|+.||+++|++++ .++. +++|+++|++||++||||++||+||||||+.|++++++|++|||
T Consensus 173 Y~As~l~~~gE~iLdeA~~Ft~~~L~~~~--~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLe 249 (569)
T 2j5c_A 173 YEASFLSAQGEETLRLARDFATKFLQKRV--LVDK-DINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLE 249 (569)
T ss_dssp HHHHTTCCTTCHHHHHHHHHHHHTTSSCC-------CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTCTTCCHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHH--hhcC-CCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccCccccHHHHH
Confidence 99999999999999999999999999887 3332 67899999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhcC
Q 046807 156 LAKMEFNVLQAIYQEELKDF 175 (175)
Q Consensus 156 lAklDFn~~Q~~hq~EL~~l 175 (175)
|||+|||+||++||+||+++
T Consensus 250 lAkldFn~~Q~~hq~EL~~l 269 (569)
T 2j5c_A 250 LAKLDFNMVQAQFQQELKEA 269 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999864
No 5
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=1.5e-65 Score=470.69 Aligned_cols=168 Identities=43% Similarity=0.756 Sum_probs=158.8
Q ss_pred CCCccccHHHHHHHHHHHHhcCCCcccccCChhhhHHHHHHHHhcCCCcccccccccccCCCcc---cccchHHHHHHHH
Q 046807 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGF---ICNDFKEIMSLHE 77 (175)
Q Consensus 1 LGI~~hF~~EI~~~L~~i~~~~~~~~~~~~dl~~~AL~FRLLRqhGy~VS~Dvf~~F~d~~G~F---~~~d~~glL~LYe 77 (175)
|||+|||++||+++|++||+. ... ...||++|||+|||||||||+||||||++|+|++|+| +.+||+|||+|||
T Consensus 83 LGi~~hF~~EI~~~L~~i~~~-~~~--~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYe 159 (554)
T 3g4d_A 83 LGVSYHFTKEIEDELENIYHN-NND--AENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQ 159 (554)
T ss_dssp TTCGGGCHHHHHHHHHHHHHS-CCC--TTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHH
T ss_pred cCchhhhHHHHHHHHHHHHhc-cCC--CCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHH
Confidence 899999999999999999974 211 1379999999999999999999999999999999999 7899999999999
Q ss_pred hhcCCCCCccHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHhcCCCccCCchHHHHHhhHHHhhccCcccHHHHHHH
Q 046807 78 ASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQAKRALELPLHWKVPMLEARWFIDVYEKREDKNHLLLELA 157 (175)
Q Consensus 78 AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelA 157 (175)
|||+++|||.|||+|+.||+++|++++ +.+ +++|+++|+|||++||||++||+||||||+.|++++++|++||+||
T Consensus 160 As~l~~~gE~iLdeA~~fs~~~L~~~~--~~~--~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelA 235 (554)
T 3g4d_A 160 ASYLRVHGEDILDEAISFTTHHLSLAV--ASL--DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFA 235 (554)
T ss_dssp HHTTCCTTCHHHHHHHHHHHHHHHHHS--TTC--CTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHHHHH--hcc--CchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHH
Confidence 999999999999999999999999998 566 7889999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhcC
Q 046807 158 KMEFNVLQAIYQEELKDF 175 (175)
Q Consensus 158 klDFn~~Q~~hq~EL~~l 175 (175)
|+|||+||++||+||+++
T Consensus 236 kldFn~~Q~~hq~El~~l 253 (554)
T 3g4d_A 236 KIDFNMLQFLHRKELSEI 253 (554)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 999999999999999864
No 6
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.5e-65 Score=470.42 Aligned_cols=167 Identities=41% Similarity=0.727 Sum_probs=159.4
Q ss_pred CCCccccHHHHHHHHHHHHhcCCCcccccCChhhhHHHHHHHHhcCCCcccccccccccCCCcc---cccchHHHHHHHH
Q 046807 1 LGLAYHFETEIRKILHNIYNSNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGF---ICNDFKEIMSLHE 77 (175)
Q Consensus 1 LGI~~hF~~EI~~~L~~i~~~~~~~~~~~~dl~~~AL~FRLLRqhGy~VS~Dvf~~F~d~~G~F---~~~d~~glL~LYe 77 (175)
|||+|||++||+++|++||+.+.. ..||++|||+|||||||||+||||||++|+|++|+| +.+||+|||+|||
T Consensus 79 LGi~~hF~~EI~~~L~~i~~~~~~----~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYe 154 (550)
T 3m00_A 79 LGISYHFEKEIDDILDQIYNQNSN----CNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYE 154 (550)
T ss_dssp TTCGGGCHHHHHHHHHHHHHHCCC----CSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHH
T ss_pred cCchhhhHHHHHHHHHHHHHhccc----CCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHH
Confidence 899999999999999999986543 379999999999999999999999999999999999 8899999999999
Q ss_pred hhcCCCCCccHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHhcCCCccCCchHHHHHhhHH-HhhccCcccHHHHHH
Q 046807 78 ASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQAKRALELPLHWKVPMLEARWFID-VYEKREDKNHLLLEL 156 (175)
Q Consensus 78 AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~-~Y~~~~~~n~~lLel 156 (175)
|||+++|||.|||+|+.||+++|++++ +++ +++|+++|+|||++||||++||+||||||+ .|++++++|++||+|
T Consensus 155 As~l~~~gE~iLdeA~~fs~~~L~~~~--~~~--~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLel 230 (550)
T 3m00_A 155 ASHVRTHADDILEDALAFSTIHLESAA--PHL--KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRF 230 (550)
T ss_dssp HHTTCCTTCGGGTTHHHHHHHHHHHHG--GGC--CTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHHH--hcc--CccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHH
Confidence 999999999999999999999999988 556 788999999999999999999999999999 999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhcC
Q 046807 157 AKMEFNVLQAIYQEELKDF 175 (175)
Q Consensus 157 AklDFn~~Q~~hq~EL~~l 175 (175)
||+|||+||++||+||+++
T Consensus 231 AkldFn~~Q~~hq~EL~~l 249 (550)
T 3m00_A 231 AKLDFNLLQMLHKQELAQV 249 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999864
No 7
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=3e-61 Score=455.51 Aligned_cols=173 Identities=37% Similarity=0.603 Sum_probs=157.9
Q ss_pred CCCccccHHHHHHHHHHHHhcCCCc------ccccCChhhhHHHHHHHHhcCCCcccccccccccCCCcc------cccc
Q 046807 1 LGLAYHFETEIRKILHNIYNSNKDY------NWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGF------ICND 68 (175)
Q Consensus 1 LGI~~hF~~EI~~~L~~i~~~~~~~------~~~~~dl~~~AL~FRLLRqhGy~VS~Dvf~~F~d~~G~F------~~~d 68 (175)
|||+|||++||+++|+.||+.+... .....|+++|||+|||||||||+||||||++|+|++|+| +.+|
T Consensus 259 LGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~~~~~d 338 (764)
T 3p5p_A 259 LGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVE 338 (764)
T ss_dssp HTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCSCTTCSCCC
T ss_pred cCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhhcCCCCccccccccccc
Confidence 7999999999999999999864321 112469999999999999999999999999999999999 4689
Q ss_pred hHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHhhc-CCCCChhHHHHHHHhcCCCccCCchHHHHHhhHHHhhccC
Q 046807 69 FKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISK-SKQGDVFVAEQAKRALELPLHWKVPMLEARWFIDVYEKRE 147 (175)
Q Consensus 69 ~~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~-~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~ 147 (175)
|+||||||||||+++|||+|||||+.||+++|++++.++ .+ +++|+++|+|||++||||++||+||||||+.|++++
T Consensus 339 v~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~--~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~ 416 (764)
T 3p5p_A 339 LRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKIST--NTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNY 416 (764)
T ss_dssp HHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCS--SSHHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTC
T ss_pred cHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCC--CccHHHHHHHHhcCchhccchHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999988542 35 788999999999999999999999999999999876
Q ss_pred c------------ccHHHHHHHHhhhHHHHHHHHHHhhcC
Q 046807 148 D------------KNHLLLELAKMEFNVLQAIYQEELKDF 175 (175)
Q Consensus 148 ~------------~n~~lLelAklDFn~~Q~~hq~EL~~l 175 (175)
. +|++||||||+|||+||++||+||+++
T Consensus 417 ~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l 456 (764)
T 3p5p_A 417 VWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLL 456 (764)
T ss_dssp CEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhh
Confidence 5 499999999999999999999999864
No 8
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=6.7e-61 Score=454.17 Aligned_cols=173 Identities=35% Similarity=0.563 Sum_probs=157.2
Q ss_pred CCCccccHHHHHHHHHHHHhcCCCc--c----cccCChhhhHHHHHHHHhcCCCcccccccccccCCCcc------cccc
Q 046807 1 LGLAYHFETEIRKILHNIYNSNKDY--N----WRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGF------ICND 68 (175)
Q Consensus 1 LGI~~hF~~EI~~~L~~i~~~~~~~--~----~~~~dl~~~AL~FRLLRqhGy~VS~Dvf~~F~d~~G~F------~~~d 68 (175)
|||+|||++||+++|+.||+.+... . ....|+++|||+|||||||||+||||||++|+|++|+| ..+|
T Consensus 283 LGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~e~~~d 362 (785)
T 3s9v_A 283 LGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRG 362 (785)
T ss_dssp TTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCSSTTCCCCC
T ss_pred cCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCeeecccccccc
Confidence 8999999999999999999864321 1 12469999999999999999999999999999999999 2589
Q ss_pred hHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHhhc------CCCCChhHHHHHHHhcCCCccCCchHHHHHhhHHH
Q 046807 69 FKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISK------SKQGDVFVAEQAKRALELPLHWKVPMLEARWFIDV 142 (175)
Q Consensus 69 ~~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~------~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~ 142 (175)
|+|||+||||||+++|||+|||||+.||+++|++++.++ .+ +++|+++|+|||++||||++||+||||||++
T Consensus 363 v~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~--~~~L~~eV~~aL~~P~~~~l~RleaR~yI~~ 440 (785)
T 3s9v_A 363 VTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAF--KKNIRGEVEYALKYPWHKSMPRLEARSYIEN 440 (785)
T ss_dssp HHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCS--SSCHHHHHHHHHHSCGGGCCHHHHHHHHHHH
T ss_pred ccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhcccccccccc--CCcHHHHHHHHhCCccccCchHHHHHHHHHH
Confidence 999999999999999999999999999999999987432 24 6789999999999999999999999999999
Q ss_pred hhccCc------------ccHHHHHHHHhhhHHHHHHHHHHhhcC
Q 046807 143 YEKRED------------KNHLLLELAKMEFNVLQAIYQEELKDF 175 (175)
Q Consensus 143 Y~~~~~------------~n~~lLelAklDFn~~Q~~hq~EL~~l 175 (175)
|++++. +|++||||||+|||+||++||+||+++
T Consensus 441 Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l 485 (785)
T 3s9v_A 441 YGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDL 485 (785)
T ss_dssp CCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998875 399999999999999999999999864
No 9
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=5.6e-61 Score=456.26 Aligned_cols=175 Identities=37% Similarity=0.586 Sum_probs=154.5
Q ss_pred CCCccccHHHHHHHHHHHHhcCCCc------ccccCChhhhHHHHHHHHhcCCCcccccccccccCCCcc------cccc
Q 046807 1 LGLAYHFETEIRKILHNIYNSNKDY------NWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGF------ICND 68 (175)
Q Consensus 1 LGI~~hF~~EI~~~L~~i~~~~~~~------~~~~~dl~~~AL~FRLLRqhGy~VS~Dvf~~F~d~~G~F------~~~d 68 (175)
|||+|||++||+++|+.||+.+... .....|+++|||+|||||||||+||||||++|+|++|+| +.+|
T Consensus 311 LGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~~~~~d 390 (817)
T 3sdr_A 311 LGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKD 390 (817)
T ss_dssp TTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCC--CBCCCSSCHHHH
T ss_pred cCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHhhcCCCceechhhhchh
Confidence 8999999999999999999864321 112469999999999999999999999999999999999 2589
Q ss_pred hHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHhhcCCCC----ChhHHHHHHHhcCCCccCCchHHHHHhhHHHhh
Q 046807 69 FKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQG----DVFVAEQAKRALELPLHWKVPMLEARWFIDVYE 144 (175)
Q Consensus 69 ~~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~----~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~ 144 (175)
|+|||+||||||+++|||+|||||+.||+++|++++.++...+ +++|+++|+|||++||||++||+||||||++|+
T Consensus 391 v~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~ 470 (817)
T 3sdr_A 391 VASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYR 470 (817)
T ss_dssp HHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTTCCHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhccChHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999874322110 367999999999999999999999999999999
Q ss_pred ccCc------------ccHHHHHHHHhhhHHHHHHHHHHhhcC
Q 046807 145 KRED------------KNHLLLELAKMEFNVLQAIYQEELKDF 175 (175)
Q Consensus 145 ~~~~------------~n~~lLelAklDFn~~Q~~hq~EL~~l 175 (175)
+++. +|++||||||+|||+||++||+||+++
T Consensus 471 ~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l 513 (817)
T 3sdr_A 471 PDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNV 513 (817)
T ss_dssp TTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 8775 499999999999999999999999864
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1.4e-59 Score=441.77 Aligned_cols=174 Identities=34% Similarity=0.459 Sum_probs=155.6
Q ss_pred CCCccccHHHHHHHHHHHHhcCCCc--c----cccCChhhhHHHHHHHHhcCCCcccccccccccCCCcc------cccc
Q 046807 1 LGLAYHFETEIRKILHNIYNSNKDY--N----WRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGF------ICND 68 (175)
Q Consensus 1 LGI~~hF~~EI~~~L~~i~~~~~~~--~----~~~~dl~~~AL~FRLLRqhGy~VS~Dvf~~F~d~~G~F------~~~d 68 (175)
|||+|||++||+++|+.+|+.+... . ....|+++|||+|||||||||+||||||++|+ ++|+| ..+|
T Consensus 258 LGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~D 336 (727)
T 3pya_A 258 LGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQA 336 (727)
T ss_dssp TTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHHHHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCC
T ss_pred cCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHHHHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccc
Confidence 8999999999999999999864321 1 12469999999999999999999999999999 78999 3579
Q ss_pred hHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHhhcCCCC----ChhHHHHHHHhcCCCccCCchHHHHHhhHHHhh
Q 046807 69 FKEIMSLHEASYYSFEGESIMEEAWQFTSKHLKEVMISKSKQG----DVFVAEQAKRALELPLHWKVPMLEARWFIDVYE 144 (175)
Q Consensus 69 ~~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~----~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~ 144 (175)
++|||+||||||+++|||+|||+|+.||+++|++.+.++.+.+ +++|+++|+|||++||||++||+||||||+.|+
T Consensus 337 v~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~ 416 (727)
T 3pya_A 337 VTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYG 416 (727)
T ss_dssp HHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999875443321 478999999999999999999999999999999
Q ss_pred ccCc-------------ccHHHHHHHHhhhHHHHHHHHHHhhcC
Q 046807 145 KRED-------------KNHLLLELAKMEFNVLQAIYQEELKDF 175 (175)
Q Consensus 145 ~~~~-------------~n~~lLelAklDFn~~Q~~hq~EL~~l 175 (175)
++++ +|++||||||+|||+||++||+||+++
T Consensus 417 ~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l 460 (727)
T 3pya_A 417 GENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIF 460 (727)
T ss_dssp GGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhhh
Confidence 7654 699999999999999999999999864
No 11
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=41.58 E-value=14 Score=23.69 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=20.5
Q ss_pred HHhcCCCcccccccccccCCCcccccchHHHHHHHHhhcC
Q 046807 42 LRQHGYPVSQDVFNGFKDDKGGFICNDFKEIMSLHEASYY 81 (175)
Q Consensus 42 LRqhGy~VS~Dvf~~F~d~~G~F~~~d~~glL~LYeAS~l 81 (175)
-|.+||.||.- |.. ...+++-|+|+++
T Consensus 22 Ar~nG~~VsdR---------GRI----p~~V~eAY~aA~~ 48 (55)
T 2kng_A 22 ARRNGHNVSTR---------GRI----PADVIDAYHAATL 48 (55)
T ss_dssp HHHTTCCCCSS---------SCC----CHHHHHHHHHHHH
T ss_pred HHHcCCcCCCC---------CCC----CHHHHHHHHHcCC
Confidence 57899999864 644 5677888888875
No 12
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=26.78 E-value=32 Score=22.64 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=29.3
Q ss_pred hHHHHHHHHhcCC-CcccccccccccCCCcccccchHHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q 046807 35 TSLEFRLLRQHGY-PVSQDVFNGFKDDKGGFICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSK 98 (175)
Q Consensus 35 ~AL~FRLLRqhGy-~VS~Dvf~~F~d~~G~F~~~d~~glL~LYeAS~l~~~gE~iLdeA~~Fs~~ 98 (175)
..+-=|||+..|- .||++|-..+.+ | +|+= .++||.+|..||..
T Consensus 4 a~~i~~iLk~~G~~~~~~~v~~~L~e----~----------~~ry------~~~il~dA~~~a~H 48 (68)
T 1taf_A 4 AQVIMSILKELNVQEYEPRVVNQLLE----F----------TFRY------VTSILDDAKVYANH 48 (68)
T ss_dssp HHHHHHHHHHTTCCCBCTHHHHHHHH----H----------HHHH------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCcccCHHHHHHHHH----H----------HHHH------HHHHHHHHHHHHHH
Confidence 4455688999998 777776555443 1 2322 36788999998875
No 13
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=26.33 E-value=37 Score=23.81 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCC-cccccccccccCCCcccccchHHHHHHHHhhcCCCCCccHHHHHHHHHHHH
Q 046807 36 SLEFRLLRQHGYP-VSQDVFNGFKDDKGGFICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSKH 99 (175)
Q Consensus 36 AL~FRLLRqhGy~-VS~Dvf~~F~d~~G~F~~~d~~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~ 99 (175)
+--=||+|.-|+. ||.|+.... ...|+-| -+.|+++|..||...
T Consensus 33 ~~I~Rlar~~G~~rIs~~a~~~l------------~~vle~~--------~~~V~~dA~~~a~ha 77 (103)
T 2yfw_B 33 PAIRRLARRGGVKRISGLIYEEV------------RNVLKTF--------LESVIRDAVTYTEHA 77 (103)
T ss_dssp HHHHHHHHHTTCCEECTTHHHHH------------HHHHHHH--------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCccccCHHHHHHH------------HHHHHHH--------HHHHHHHHHHHHHHc
Confidence 3344889999984 777765443 2233222 156889999998753
No 14
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=25.43 E-value=39 Score=23.64 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=27.9
Q ss_pred hHHHHHHHHhcCCC-cccccccccccCCCcccccchHHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q 046807 35 TSLEFRLLRQHGYP-VSQDVFNGFKDDKGGFICNDFKEIMSLHEASYYSFEGESIMEEAWQFTSK 98 (175)
Q Consensus 35 ~AL~FRLLRqhGy~-VS~Dvf~~F~d~~G~F~~~d~~glL~LYeAS~l~~~gE~iLdeA~~Fs~~ 98 (175)
.+--=||+|.-|+. ||.|+..... ..++-.+ +.|+++|..||..
T Consensus 32 ~~~I~Rlar~~G~~rIs~~a~~~l~--------~vle~~~------------~~V~~dA~~~a~h 76 (103)
T 1tzy_D 32 KPAIRRLARRGGVKRISGLIYEETR--------GVLKVFL------------ENVIRDAVTYTEH 76 (103)
T ss_dssp HHHHHHHHHHTTCCEECTTHHHHHH--------HHHHHHH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccccCHHHHHHHH--------HHHHHHH------------HHHHHHHHHHHHH
Confidence 33444899999984 7777654432 2222222 5688999999875
No 15
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.70 E-value=52 Score=18.09 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=11.9
Q ss_pred CCccccHHHHHHHHHHHHh
Q 046807 2 GLAYHFETEIRKILHNIYN 20 (175)
Q Consensus 2 GI~~hF~~EI~~~L~~i~~ 20 (175)
|+.+.=++.|++.||+.-.
T Consensus 5 gvtrfdekqieelldncie 23 (31)
T 4h62_V 5 GVTRFDEKQIEELLDNCIE 23 (31)
T ss_dssp -----CHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 7788889999999998753
Done!