BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046808
(653 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 251/598 (41%), Positives = 379/598 (63%), Gaps = 12/598 (2%)
Query: 64 NGK-VEQAQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIEN 122
NG+ V+ + ++ + T + E L IRH+CAH++ A+++L+P K+ IGP I+N
Sbjct: 41 NGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDN 100
Query: 123 GFYYDFDME-PLTDKDLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEIL 181
GFYYD D++ LT +D++ ++K M + +N +++++VS EA+ E YK+ IL
Sbjct: 101 GFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSIL 160
Query: 182 -ESIIEDPITIYHIGEEWWDLCAGPHVETTG-----KINKKA-VELEGDEKKPMLQRIYG 234
E+I D + EE+ D+C GPHV K+ K A GD MLQRIYG
Sbjct: 161 DENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG 220
Query: 235 TAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIED 294
TAW +++ L AYL EEA +RDHR++G+ LDL+ +Q+EA G +VFWH G + +E
Sbjct: 221 TAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPG-MVFWHNDGWTIFRELEV 279
Query: 295 FWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHI 354
F + E+ Y + P + LW+ +GH D Y++ M+ + E+ Y ++PMNCP H+
Sbjct: 280 FVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS-ENREYCIKPMNCPGHV 338
Query: 355 LVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIR 414
++ + L+SYRD P+R+AE G+ +R E SGSLHGL RVRGFTQDDAHIFC E+QI+DE+
Sbjct: 339 QIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVN 398
Query: 415 AVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGG 474
+ L ++ FGF K V LST+PEK +G D++W++A + L AL++ ++ G
Sbjct: 399 GCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGE 458
Query: 475 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSL 534
GAFYGPKI+ + D L R WQC T+Q+DF+LP R YV ++E+K P+MIHRA+LGS+
Sbjct: 459 GAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSM 518
Query: 535 ERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERL 593
ERF G+L E +AG FP WL+P+Q ++ +TD+Q EY NE+ +KL GIR + E++
Sbjct: 519 ERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKI 578
Query: 594 PKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 651
IR +++P M V G KEV++ V VR+R G +LG+M V++ I +++ +R+
Sbjct: 579 GFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRS 636
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/593 (41%), Positives = 369/593 (62%), Gaps = 19/593 (3%)
Query: 64 NGKVEQAQMTSETEKVV-LPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIEN 122
NG++ ET+ + + T S E L +RH+ AH+MA A+++LY + K +GP IE
Sbjct: 43 NGQLVDLTKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEG 102
Query: 123 GFYYDFDM-EPLTDKDLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEIL 181
GFYYDFD+ + ++ D ++I+K M +I+ N+ + R+ VSRDEAK + + YK+E++
Sbjct: 103 GFYYDFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKE--LFSNDEYKLELI 160
Query: 182 ESIIEDP-ITIYHIGEEWWDLCAGPHVETTGKINK------KAVELEGDEKKPMLQRIYG 234
++I ED +T+Y G+ + DLC G HV +T KI + GD MLQRIYG
Sbjct: 161 DAIPEDENVTLYSQGD-FTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYG 219
Query: 235 TAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIED 294
TA+ ++++LKA+L EE K RDHR++G++L+LF+ G GL W P G+ +R IE
Sbjct: 220 TAFFDKKELKAHLQMLEERKERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIER 279
Query: 295 FWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNI-EDELYQLRPMNCPYH 353
+ + YD +YTP +A DL+K SGH D Y+E+M+ M + E E LRPMNCP+H
Sbjct: 280 YIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHH 339
Query: 354 ILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEI 413
+++Y K SYR+ PIR+AELGT++RYE SG++ GL RVRG T +D+HIF DQIK+E
Sbjct: 340 MMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEF 399
Query: 414 RAVLDLTEEILLQFGFNKYEVNLSTK----PEKAVGGDDIWEKATSALRDALDDKGWDYQ 469
+ V+++ ++ FGF Y LS + EK DD+W KA + L++A D+ G Y+
Sbjct: 400 KRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYE 459
Query: 470 IDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRA 529
G AFYGPK+D++++ A+G++ ST Q+DF LP+RFD+ Y+ + E RP++IHR
Sbjct: 460 EAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRG 519
Query: 530 VLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVT-DTQLEYCNEVIKKLKTNGIRAEI- 587
V+ ++ERF L E G FP WL+P Q +++PV D +Y ++ +LK+ G+R I
Sbjct: 520 VVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSID 579
Query: 588 CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFI 640
E++ IR A+ QKIP VVG KEV+ V VR + T++ D+FI
Sbjct: 580 DRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFI 632
>pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
Length = 401
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/397 (44%), Positives = 263/397 (66%), Gaps = 3/397 (0%)
Query: 256 RDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAK 315
RDHR++G+ LDL+ +Q+EA G +VFWH G + +E F + E+ Y + P +
Sbjct: 1 RDHRKIGKQLDLYHMQEEAPG-MVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMD 59
Query: 316 ADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELG 375
LW+ +GH D Y++ M+ + E+ Y ++PMNCP H+ ++ + L+SYRD P+R+AE G
Sbjct: 60 RVLWEKTGHWDNYKDAMFTTSS-ENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFG 118
Query: 376 TVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVN 435
+ +R E SGSLHGL RVRGFTQDDAHIFC E+QI+DE+ + L ++ FGF K V
Sbjct: 119 SCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVK 178
Query: 436 LSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQ 495
LST+PEK +G D++W++A + L AL++ ++ G GAFYGPKI+ + D L R WQ
Sbjct: 179 LSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQ 238
Query: 496 CSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSP 555
C T+Q+DF+LP R YV ++E+K P+MIHRA+LGS+ERF G+L E +AG FP WL+P
Sbjct: 239 CGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAP 298
Query: 556 IQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAK 614
+Q ++ +TD+Q EY NE+ +KL GIR + E++ IR +++P M V G K
Sbjct: 299 VQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDK 358
Query: 615 EVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 651
EV++ V VR+R G +LG+M V++ I +++ +R+
Sbjct: 359 EVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRS 395
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast
Mitochondrial Threonyl- Trna Synthetase Determined At
2.1 Angstrom Resolution
pdb|3UGT|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UH0|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Threonyl Sulfamoyl
Adenylate
pdb|4EO4|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
Length = 460
Score = 248 bits (632), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 223/397 (56%), Gaps = 33/397 (8%)
Query: 261 LGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWK-KSHIEHDYDLLYTPHVAKADLW 319
+ Q DLF + D G +F+ P G+ + + + +F K + + ++ + TP + K LW
Sbjct: 40 VSQRQDLF-MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLW 98
Query: 320 KISGHLDFYRENMY--DQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTV 377
+ SGH + Y ++M+ + + E E Y L+PMNCP H L++ +K +SY + P+R ++ +
Sbjct: 99 EKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPL 158
Query: 378 YRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQ-FGFNK----- 431
+R E SG+L GL R+R F QDD HIFC Q+K EI L L + + + F F K
Sbjct: 159 HRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGA 218
Query: 432 ---YEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIED 488
Y +N ST+P+ +G +W A L++ L++ G ++++ G GAFYGPK+D+ + D
Sbjct: 219 ESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLDIMVTD 278
Query: 489 ALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGD 548
L + Q +TIQ+DF LP+RFD+ + D ++ KRPIMIHRA GS+ERF +LI+ G
Sbjct: 279 HLRKTHQVATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSNEGR 338
Query: 549 FPLWLSPIQARVLPVTDT---QLEYCNEVIKKLKTNGIRAE----------------ICH 589
+P WL+P QA ++PV QL+ C + KKL+ N + A+
Sbjct: 339 WPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLR-NELEADDMEPVPLNDWHFNVDLDIR 397
Query: 590 GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSR 626
E + I++A + + +VG +EV Q +R R
Sbjct: 398 NEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRER 434
>pdb|3A32|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
Thrrs-1 From Aeropyrum Pernix
Length = 471
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/382 (37%), Positives = 210/382 (54%), Gaps = 35/382 (9%)
Query: 275 GGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYD 334
G G+ + G +R+ + + K H Y ++ TP +A +L+K+SGH++FYR NMY
Sbjct: 38 GAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMY- 96
Query: 335 QMNIEDELYQLRPMNCPYHILVYQRKLQSYRD---FPIRVAELGTVYRYELSGSLHGLFR 391
+IE + ++PMNCPYHIL++ ++ +R P +V E G V+RYE SGS++GL R
Sbjct: 97 LFDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLR 156
Query: 392 VRGFTQDDAHIFCLEDQIKDEIRAVLD---LTEEILLQFGFNK--YEVNLSTKPEKAVGG 446
VRGFTQDDAHI ++ D + V + L E L + G + ++V LS + +G
Sbjct: 157 VRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGK 216
Query: 447 DDI-----WEKATSALRDALDDKGWDYQID----EGGGAFYGPKIDLKI---EDALGRKW 494
+ + WE A ALR+A Y ID EG AFYGPK+D + E + ++W
Sbjct: 217 EFMGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIMMVEESGVSKEW 276
Query: 495 QCSTIQVDFNLPQRF---DIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPL 551
Q TIQ DFNLP+RF D+V + E+ +IHRA+LGS+ERF GV +EH G P
Sbjct: 277 QMGTIQFDFNLPRRFRLYDVVREEFGIEEV--YIIHRALLGSIERFLGVYLEHRRGRMPF 334
Query: 552 WLSPIQARVLPV-----TDTQLE-YCNEVIKKLKTNGIRAEICHGER--LPKLIRNAEKQ 603
L+PIQ V+ V D ++E + + K L G R + + L +R+ E
Sbjct: 335 TLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIEST 394
Query: 604 KIPLMAV-VGAKEVDAQTVTVR 624
P + V +GAKEV + + VR
Sbjct: 395 AKPAVNVFIGAKEVREKVLDVR 416
>pdb|3A31|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
Thrrs-1 From Aeropyrum Pernix (Selenomethionine
Derivative)
Length = 471
Score = 221 bits (564), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 207/382 (54%), Gaps = 35/382 (9%)
Query: 275 GGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYD 334
G G+ + G +R+ + + K H Y ++ TP +A +L+K+SGH++FYR N Y
Sbjct: 38 GAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNXY- 96
Query: 335 QMNIEDELYQLRPMNCPYHILVYQRKLQSYRD---FPIRVAELGTVYRYELSGSLHGLFR 391
+IE + ++P NCPYHIL++ ++ +R P +V E G V+RYE SGS++GL R
Sbjct: 97 LFDIEGHEFAVKPXNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLR 156
Query: 392 VRGFTQDDAHIFCLEDQIKDEIRAVLD---LTEEILLQFGFNK--YEVNLSTKPEKAVGG 446
VRGFTQDDAHI ++ D + V + L E L + G + ++V LS + +G
Sbjct: 157 VRGFTQDDAHIIVPGGRVIDVVYDVFEEXKLVLERLFKLGVSSETFKVRLSXSDKSLIGK 216
Query: 447 D-----DIWEKATSALRDALDDKGWDYQID----EGGGAFYGPKIDLKI---EDALGRKW 494
+ + WE A ALR+A Y ID EG AFYGPK+D E + ++W
Sbjct: 217 EFXGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIXXVEESGVSKEW 276
Query: 495 QCSTIQVDFNLPQRF---DIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPL 551
Q TIQ DFNLP+RF D+V + E+ +IHRA+LGS+ERF GV +EH G P
Sbjct: 277 QXGTIQFDFNLPRRFRLYDVVREEFGIEEV--YIIHRALLGSIERFLGVYLEHRRGRXPF 334
Query: 552 WLSPIQARVLPV-----TDTQLE-YCNEVIKKLKTNGIRAEICHGER--LPKLIRNAEKQ 603
L+PIQ V+ V D ++E + + K L G R + + L +R+ E
Sbjct: 335 TLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIEST 394
Query: 604 KIPLMAV-VGAKEVDAQTVTVR 624
P + V +GAKEV + + VR
Sbjct: 395 AKPAVNVFIGAKEVREKVLDVR 416
>pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase
pdb|1TKE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Serine
pdb|1TKG|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|1TKY|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Seryl-3'-aminoadenosine
Length = 224
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 105/183 (57%), Gaps = 9/183 (4%)
Query: 64 NGK-VEQAQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIEN 122
NG+ V+ + ++ + T + E L IRH+CAH++ A+++L+P K+ IGP I+N
Sbjct: 41 NGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDN 100
Query: 123 GFYYDFDME-PLTDKDLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEIL 181
GFYYD D++ LT +D++ ++K M + +N +++++VS EA+ E YK+ IL
Sbjct: 101 GFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSIL 160
Query: 182 -ESIIEDPITIYHIGEEWWDLCAGPHVETTG-----KINKKA-VELEGDEKKPMLQRIYG 234
E+I D + EE+ D+C GPHV K+ K A GD MLQRIYG
Sbjct: 161 DENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG 220
Query: 235 TAW 237
TAW
Sbjct: 221 TAW 223
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
Length = 572
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 293 EDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPY 352
E+F K +E + P + A+LWK SG + Y N+Y + D Y L P +
Sbjct: 59 EEFEKIDAVE-----MLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEET 113
Query: 353 HILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF-----CLED 407
+ + ++ SY+ P+ + ++ T YR E S GL R R F D + F L+
Sbjct: 114 FTELIRDEINSYKRLPLNLYQIQTKYRDE-KRSRSGLLRGREFIMKDGYSFHADEASLDQ 172
Query: 408 QIKDEIRAVLDLTEEILLQF 427
+D +A + E L+F
Sbjct: 173 SYRDYEKAYSRIFERCGLEF 192
>pdb|4HVC|A Chain A, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
pdb|4HVC|B Chain B, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
Length = 519
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 83/381 (21%), Positives = 150/381 (39%), Gaps = 61/381 (16%)
Query: 277 GLVFWHPKGSIVRHIIEDFW----KKSHIEHDYDLLYTPHVAKADLWKISGHL-DFYREN 331
G P + I+DF+ KK +E+ Y ++ V+++ L K H+ DF E
Sbjct: 52 GCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMF---VSQSALEKEKTHVADFAPEV 108
Query: 332 MYDQMNIEDELYQ---LRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHG 388
+ + + EL + +RP + Y + +QS+RD PI++ + V R+E
Sbjct: 109 AWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHP-QP 167
Query: 389 LFRVRGFTQDDAH-IFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGD 447
R R F + H F ++ +E+ +LDL ++ + T+ EK GGD
Sbjct: 168 FLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGD 227
Query: 448 DIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQ 507
T+ + + G Q GG + + LG+ N +
Sbjct: 228 -----YTTTIEAFISASGRAIQ---GGTSHH-----------LGQ-----------NFSK 257
Query: 508 RFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSP----IQARVLPV 563
F+IV+ D ++ + G R GV+ + + L L P +Q ++P
Sbjct: 258 MFEIVFEDPKIPGEKQFAYQNS-WGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPC 316
Query: 564 TDTQ----------LEYCNEVIKKLKTNGI--RAEICHGERLPKLIRNAEKQKIPLMAVV 611
T + CN+ ++L + I RA++ + E + +P+ V
Sbjct: 317 GITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEV 376
Query: 612 GAKEV-DAQTVTVRSRFGGEL 631
G +++ Q V VR G +L
Sbjct: 377 GPRDMKSCQFVAVRRDTGEKL 397
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
Length = 518
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 82/386 (21%), Positives = 149/386 (38%), Gaps = 79/386 (20%)
Query: 277 GLVFWHPKG----SIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENM 332
G V + P G + + + E+ + K I +L+ + ++ L K S H+ +
Sbjct: 46 GCVVFRPYGFFMENAIMRLCEEEYAKVGISQ---ILFPTVIPESFLKKESDHIKGFEAEC 102
Query: 333 Y----DQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHG 388
+ + +E LRP + ++ + ++SY+D P+++ + T++R+E +
Sbjct: 103 FWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNT-KP 161
Query: 389 LFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDD 448
L RVR ++AH C +D + + D
Sbjct: 162 LIRVREIHWNEAH--CCHATAEDAVSQL------------------------------SD 189
Query: 449 IWEKATSALRDALDDKGWDYQ---IDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNL 505
W+ + D L KG + D GA Y D+ + GR Q + I NL
Sbjct: 190 YWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVM--PCGRVLQTAGIH---NL 244
Query: 506 PQR----FDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGD-----FPLWLSPI 556
QR FDI+Y + +E P + G R + + GD P ++PI
Sbjct: 245 GQRFSSTFDILYANKANESVHPYL---TCAGISTRVLACALSIH-GDSGGLVLPPLIAPI 300
Query: 557 QARVLPV---------TDTQ-LEYCNEVIKKLKTN-GIRAEI--CHGERLPKLIRNAEKQ 603
++P+ +D Q L NE+ LK+ G+R I + + + E +
Sbjct: 301 HVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYYYELK 360
Query: 604 KIPLMAVVGAKEV-DAQTVTVRSRFG 628
+PL VG +++ + Q + V G
Sbjct: 361 GVPLRIEVGQRDLANGQCIVVPRDVG 386
>pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4L|B Chain B, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4L|C Chain C, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4M|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4M|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4M|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4N|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4N|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4N|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4O|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
pdb|2I4O|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
pdb|2I4O|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
Length = 458
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 1/131 (0%)
Query: 277 GLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM 336
G+ W P G V IE ++ L P + ADLW+ SG D Y M
Sbjct: 58 GIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIA 117
Query: 337 NIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFT 396
+ P N +++ ++SY+ P+ + + +R E G+ R R F
Sbjct: 118 DRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRF-GVMRGREFL 176
Query: 397 QDDAHIFCLED 407
DA+ F +++
Sbjct: 177 MKDAYSFDVDE 187
>pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4Q|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4S|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1H4S|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1HC7|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1H4T|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
Length = 477
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 115/303 (37%), Gaps = 48/303 (15%)
Query: 340 DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDD 399
+E +RP + ++ + ++S+RD P + + G V R+E+ R R F +
Sbjct: 103 EEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEM--------RTRPFLR-- 152
Query: 400 AHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRD 459
T E L Q G + E+ I+ +
Sbjct: 153 --------------------TSEFLWQEGHTAH-ATREEAEEEVRRMLSIYARLAREYAA 191
Query: 460 ALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQ-VDFNLPQRFDIVYVDSNS 518
+G + ++ GA Y I+ ++D G+ Q T + N + FDI + D +
Sbjct: 192 IPVIEGLKTEKEKFAGAVYTTTIEALMKD--GKALQAGTSHYLGENFARAFDIKFQDRDL 249
Query: 519 EKKRPIMIHRAVLGSLERFFGVLIEHYAGD----FPLWLSPIQARVLPVTDTQ-----LE 569
+ K +H G RF G +I + D P L+PIQ ++P+ + LE
Sbjct: 250 QVK---YVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLE 306
Query: 570 YCNEVIKKLKTNGIRAEI-CHGERLPKL-IRNAEKQKIPLMAVVGAKEVDAQTVTVRSRF 627
+ + L G+R + + P E + +P +G K+++ + SR
Sbjct: 307 AAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRL 366
Query: 628 GGE 630
GG+
Sbjct: 367 GGK 369
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Cysteine
Sulfamoyl Adenylate
pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Proline
Sulfamoyl Adenylate
pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Alanine
Sulfamoyl Adenylate
Length = 501
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 72/375 (19%), Positives = 145/375 (38%), Gaps = 62/375 (16%)
Query: 277 GLVFWHPKGSIVRH----IIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENM 332
G+ W P G ++R I+ + H E + LL V + +L K + H+ + + +
Sbjct: 62 GMHVWMPHGFMIRKNTLKILRRILDRDHEEVLFPLL----VPEDELAKEAIHVKGFEDEV 117
Query: 333 Y----DQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHG 388
Y ++ LRP + ++ ++S+ D P+R ++ +RYE +
Sbjct: 118 YWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHT-RP 176
Query: 389 LFRVRGFTQ-DDAH-IFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGG 446
L RVR T +AH I + ++++ +++ +E G ++ +P
Sbjct: 177 LIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYL---ITRRPP----- 228
Query: 447 DDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLP 506
W+K G+ Y D + D G+ Q T+ NL
Sbjct: 229 ---WDKFP--------------------GSEYTVAFDTLMPD--GKTLQIGTVH---NLG 260
Query: 507 QRFDIVY-VDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSP----IQARVL 561
Q F + + + + +H+ G +R +I + + L L P Q ++
Sbjct: 261 QTFARTFEIKFETPEGDHEYVHQTCYGLSDRVIASVIAIHGDESGLCLPPDVAAHQVVIV 320
Query: 562 PV-----TDTQLEYCNEVIKKLKTNGIRAEICHGE-RLPKLIRNAEKQKIPLMAVVGAKE 615
P+ + +E C E+ +L+ G R + + R + E + +PL +G ++
Sbjct: 321 PIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRD 380
Query: 616 VDAQTVTVRSRFGGE 630
++ + R GE
Sbjct: 381 LEKGAAVISRRDTGE 395
>pdb|3DSQ|A Chain A, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
pdb|3DSQ|B Chain B, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
Length = 288
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 345 LRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLH 387
LRPM P ++ R+L+ D PIR+ E+GT YR E G+ H
Sbjct: 127 LRPMLAP-NLYTLWRELERLWDKPIRIFEIGTCYRKESQGAQH 168
>pdb|2ZNI|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNI|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNJ|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|C Chain C, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
Length = 308
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 345 LRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLH 387
LRPM P ++ R+L+ D PIR+ E+GT YR E G+ H
Sbjct: 147 LRPMLAP-NLYTLWRELERLWDKPIRIFEIGTCYRKESQGAQH 188
>pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|B Chain B, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|C Chain C, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|D Chain D, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
Length = 459
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 123/298 (41%), Gaps = 57/298 (19%)
Query: 345 LRPMN-CPYHILVYQRKL--QSYRDFPIRVAELGTVYRYELSGSLHGLFRVRG-FTQDDA 400
LRP + P + Y KL + + D PI++ ++ +RYE + L R+R T +A
Sbjct: 102 LRPTSETP---IYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHT-RPLIRLREIMTFKEA 157
Query: 401 HI-FCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRD 459
H +++ +++++ + + ++ G +S +PE W+K
Sbjct: 158 HTAHSTKEEAENQVKEAISIYKKFFDTLGIPYL---ISKRPE--------WDKFP----- 201
Query: 460 ALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQ-VDFNLPQRFDIVYVDSNS 518
GA Y D D GR Q +T+ + N + F+I++
Sbjct: 202 ---------------GAEYTMAFDTIFPD--GRTMQIATVHNLGQNFSKTFEIIFETPTG 244
Query: 519 EKKRPIMIHRAVLGSLERFFGVLIEHYAGD----FPLWLSPIQARVLPVT-----DTQLE 569
+K ++ G +R +I + + P ++PIQ ++P+ D +E
Sbjct: 245 DKD---YAYQTCYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVME 301
Query: 570 YCNEVIKKLKTNGIRAEICHGERLP-KLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSR 626
E+ +KLK R I + P + + E + +PL VG K+++ + +T+ R
Sbjct: 302 KAKEIYEKLK-GKFRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRR 358
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 533 SLERFFGVLIEHY-AGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICHGE 591
+ER F ++ + A + + + Q V LE +++ +L GI+AE+ + +
Sbjct: 396 GVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLY-K 454
Query: 592 RLPKLIRN---AEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSAT 647
+ PKL+ E+ IPL+A++G +E+ + +RS E ++ +D + IK T
Sbjct: 455 KNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRT 513
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 533 SLERFFGVLIEHY-AGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICHGE 591
+ER F ++ + A + + + Q V LE +++ +L GI+AE+ + +
Sbjct: 343 GVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLY-K 401
Query: 592 RLPKLIRN---AEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSAT 647
+ PKL+ E+ IPL+A++G +E+ + +RS E ++ +D + IK T
Sbjct: 402 KNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRT 460
>pdb|2E3C|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase
pdb|2ZCE|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Pyrrolysine And An Atp
Analogue
pdb|2ZIN|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Boclys And An Atp
Analogue
pdb|2ZIO|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Aloclys-Amp And Pnp
pdb|3VQV|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Amppnp
(Re-Refined)
pdb|3VQX|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|B Chain B, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|C Chain C, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|D Chain D, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQY|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Boclys And
Amppnp (Form 2)
Length = 291
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 340 DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLH 387
D+ + LRPM P ++ Y RKL PI++ E+G YR E G H
Sbjct: 129 DKNFCLRPMLAP-NLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEH 175
>pdb|2Q7E|A Chain A, The Structure Of Pyrrolysyl-trna Synthetase Bound To An
Atp Analogue
pdb|2Q7G|A Chain A, Pyrrolysine Trna Synthetase Bound To A Pyrrolysine
Analogue (Cyc) And Atp
pdb|2Q7H|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
pdb|2ZIM|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
Length = 291
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 340 DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLH 387
D+ + LRPM P ++ Y RKL PI++ E+G YR E G H
Sbjct: 129 DKNFCLRPMLAP-NLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEH 175
>pdb|3QTC|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmomers, An
O-Methyl Tyrosyl-Trna Synthetase Evolved From
Methanosarcina Mazei Pylrs, Complexed With O-Methyl
Tyrosine And Amp-Pnp
Length = 290
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 340 DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLH 387
D+ + LRPM P ++ Y RKL PI++ E+G YR E G H
Sbjct: 128 DKNFCLRPMLTP-NLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEH 174
>pdb|1WLE|A Chain A, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna
Synthetase Complexed With Seryl-Adenylate
pdb|1WLE|B Chain B, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna
Synthetase Complexed With Seryl-Adenylate
Length = 501
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 363 SYRDFPIRVAELGTVYRYELSGSLH--GLFRVRGFTQDDAHIFCLE----DQIKDEIRAV 416
++RD PIR+ T YR E GL+RV FT+ +F + +Q + +
Sbjct: 297 AFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTK--VEMFGVTGPGLEQSSELLEEF 354
Query: 417 LDLTEEILLQFGFNKYEVNLSTK 439
L L EIL + G + +++ T+
Sbjct: 355 LSLQMEILTELGLHFRVLDMPTQ 377
>pdb|1V4P|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1V4P|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1V4P|C Chain C, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1WXO|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
pdb|1WXO|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
pdb|1WXO|C Chain C, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
Length = 157
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 95 HTCAHVMAMAVQK-LYPDAKVTIGPWIENG---FYYDFDMEPLTDKDLKRIKKEMDRIIG 150
H+ HV+ AV K L +AK T +++ FD +P +D++++ I++ + +
Sbjct: 9 HSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKP-SDEEIREIERLANEKVK 67
Query: 151 RNLPLVREEVSRDEAKSRIMAIKEPYKMEILESIIEDPITIYHIGEEWWDL--CAGPHVE 208
N P+ E+ R+EA+ M ++ Y L + ED + + E W++ C H +
Sbjct: 68 ENAPIKIYELPREEAEK--MFGEDMYD---LFPVPEDVRILKVVVIEDWNVNACNKEHTK 122
Query: 209 TTGKI 213
TTG+I
Sbjct: 123 TTGEI 127
>pdb|3VQW|A Chain A, Crystal Structure Of The Semet Substituted Catalytic
Domain Of Pyrrolysyl-Trna Synthetase
Length = 291
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 340 DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLH 387
D+ + LRP P ++ Y RKL PI++ E+G YR E G H
Sbjct: 129 DKNFCLRPXLAP-NLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEH 175
>pdb|1V7O|A Chain A, Alanyl-Trna Synthetase Editing Domain Homologue Protein
From Pyrococcus Horikoshii
pdb|1V7O|B Chain B, Alanyl-Trna Synthetase Editing Domain Homologue Protein
From Pyrococcus Horikoshii
pdb|1WNU|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With L- Serine
pdb|1WNU|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With L- Serine
Length = 165
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 95 HTCAHVMAMAVQK-LYPDAKVTIGPWIENG---FYYDFDMEPLTDKDLKRIKKEMDRIIG 150
H+ HV+ AV K L +AK T +++ FD +P +D++++ I++ + +
Sbjct: 9 HSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKP-SDEEIREIERLANEKVK 67
Query: 151 RNLPLVREEVSRDEAKSRIMAIKEPYKMEILESIIEDPITIYHIGEEWWDL--CAGPHVE 208
N P+ E+ R+EA+ ++ Y L + ED + + E W++ C H +
Sbjct: 68 ENAPIKIYELPREEAEKXFG--EDXYD---LFPVPEDVRILKVVVIEDWNVNACNKEHTK 122
Query: 209 TTGKI 213
TTG+I
Sbjct: 123 TTGEI 127
>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase
pdb|3QO7|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
Candida Albicans
pdb|3QO8|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Candida
Albicans
Length = 485
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 6/130 (4%)
Query: 305 YDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS- 363
Y L P + ++ + L + E +Y ++ EDE Y + P +S
Sbjct: 204 YVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESP 263
Query: 364 YRDFPIRVAELGTVYRYELSGS----LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDL 419
P+R A + +R E +GS G+FRV F + + + ++ +E ++
Sbjct: 264 AEQLPVRYAGYSSCFRRE-AGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGC 322
Query: 420 TEEILLQFGF 429
+EE G
Sbjct: 323 SEEFYQSLGL 332
>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
Candida Albicans
Length = 485
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 6/130 (4%)
Query: 305 YDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS- 363
Y L P + ++ + L + E +Y ++ EDE Y + P +S
Sbjct: 204 YVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESP 263
Query: 364 YRDFPIRVAELGTVYRYELSGS----LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDL 419
P+R A + +R E +GS G+FRV F + + + ++ +E ++
Sbjct: 264 AEQLPVRYAGYSSCFRRE-AGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGC 322
Query: 420 TEEILLQFGF 429
+EE G
Sbjct: 323 SEEFYQSLGL 332
>pdb|1FAO|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1PHISH IN COMPLEX WITH INOSITOL 1,3,4,5-
Tetrakisphosphate
pdb|1FB8|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1/phish
Length = 126
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 384 GSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVN 435
G L ++ R FT + +DQ+ E +LDLTE +QF +++ VN
Sbjct: 28 GGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVN 79
>pdb|3OZM|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|C Chain C, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|D Chain D, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|E Chain E, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|F Chain F, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|G Chain G, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|H Chain H, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZY|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg And
M-Xylarate
pdb|3OZY|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg And
M-Xylarate
Length = 389
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 139 KRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILESIIEDPITIYHIGEE 197
+R++ E + N ++ EV DE + + + PY + +L+ IED I IGE+
Sbjct: 19 ERMRVESGAGLKLNRQMILVEVRTDEGVTGVGSPSGPYDLAVLKRAIEDVIGPQLIGED 77
>pdb|3H12|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50
pdb|3H12|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50
Length = 397
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 139 KRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILESIIEDPITIYHIGEE 197
+R++ E + N ++ EV DE + + + PY + +L+ IED I IGE+
Sbjct: 19 ERMRVESGAGLKLNRQMILVEVRTDEGVTGVGSPSGPYDLAVLKRAIEDVIGPQLIGED 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,268,131
Number of Sequences: 62578
Number of extensions: 860018
Number of successful extensions: 2484
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2435
Number of HSP's gapped (non-prelim): 35
length of query: 653
length of database: 14,973,337
effective HSP length: 105
effective length of query: 548
effective length of database: 8,402,647
effective search space: 4604650556
effective search space used: 4604650556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)