Query 046808
Match_columns 653
No_of_seqs 376 out of 3075
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:40:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12444 threonyl-tRNA synthet 100.0 3E-112 6E-117 970.9 63.9 593 53-651 35-639 (639)
2 PLN02837 threonine-tRNA ligase 100.0 8E-112 2E-116 955.5 63.0 578 75-653 28-614 (614)
3 PLN02908 threonyl-tRNA synthet 100.0 6E-112 1E-116 968.3 61.5 593 49-650 78-685 (686)
4 PRK00413 thrS threonyl-tRNA sy 100.0 5E-107 1E-111 931.9 62.1 595 53-651 31-636 (638)
5 PRK12305 thrS threonyl-tRNA sy 100.0 2E-106 4E-111 916.0 60.6 562 85-651 1-573 (575)
6 COG0441 ThrS Threonyl-tRNA syn 100.0 2E-102 4E-107 851.2 50.3 572 58-651 3-584 (589)
7 TIGR00418 thrS threonyl-tRNA s 100.0 3E-101 6E-106 871.7 58.1 548 94-645 1-561 (563)
8 PRK14799 thrS threonyl-tRNA sy 100.0 6.9E-93 1.5E-97 782.1 45.6 481 160-651 46-535 (545)
9 KOG1637 Threonyl-tRNA syntheta 100.0 2.5E-91 5.5E-96 712.2 26.5 527 50-649 27-557 (560)
10 PRK03991 threonyl-tRNA synthet 100.0 4.8E-67 1E-71 585.4 40.9 414 227-650 163-595 (613)
11 PRK12325 prolyl-tRNA synthetas 100.0 1.8E-62 3.9E-67 535.0 36.5 382 249-644 14-438 (439)
12 cd00771 ThrRS_core Threonyl-tR 100.0 9.4E-61 2E-65 497.2 29.5 298 257-555 1-298 (298)
13 PRK08661 prolyl-tRNA synthetas 100.0 2E-56 4.4E-61 491.4 34.0 357 253-649 13-389 (477)
14 TIGR00408 proS_fam_I prolyl-tR 100.0 2.8E-56 6E-61 489.1 31.1 354 258-650 12-384 (472)
15 PRK09194 prolyl-tRNA synthetas 100.0 2.3E-55 4.9E-60 494.1 36.3 387 250-644 15-561 (565)
16 COG0124 HisS Histidyl-tRNA syn 100.0 8.3E-55 1.8E-59 462.6 33.2 352 274-647 6-428 (429)
17 TIGR00409 proS_fam_II prolyl-t 100.0 3E-53 6.4E-58 472.6 37.5 390 249-645 14-567 (568)
18 PRK04173 glycyl-tRNA synthetas 100.0 1.6E-53 3.4E-58 464.3 33.6 350 260-646 9-455 (456)
19 CHL00201 syh histidine-tRNA sy 100.0 4E-51 8.6E-56 445.6 35.2 353 274-648 6-419 (430)
20 PLN02530 histidine-tRNA ligase 100.0 2.6E-46 5.7E-51 413.2 31.8 345 273-639 71-486 (487)
21 KOG2324 Prolyl-tRNA synthetase 100.0 1.6E-45 3.5E-50 365.6 26.7 369 256-644 25-427 (457)
22 PRK00037 hisS histidyl-tRNA sy 100.0 2.7E-43 5.7E-48 384.9 33.5 346 273-647 5-411 (412)
23 PLN02972 Histidyl-tRNA synthet 100.0 3.8E-43 8.3E-48 392.3 35.1 349 273-648 328-761 (763)
24 COG0442 ProS Prolyl-tRNA synth 100.0 1.1E-43 2.4E-48 382.2 27.2 382 249-643 14-498 (500)
25 PRK14894 glycyl-tRNA synthetas 100.0 3.2E-43 6.9E-48 371.2 27.4 367 261-648 12-538 (539)
26 TIGR00389 glyS_dimeric glycyl- 100.0 5.4E-43 1.2E-47 381.6 27.6 377 260-646 8-550 (551)
27 COG0423 GRS1 Glycyl-tRNA synth 100.0 1.6E-41 3.5E-46 356.1 24.7 380 260-649 11-553 (558)
28 PRK12420 histidyl-tRNA synthet 100.0 7.7E-41 1.7E-45 365.3 30.6 338 274-639 6-422 (423)
29 TIGR00442 hisS histidyl-tRNA s 100.0 1.9E-40 4.1E-45 360.5 32.4 335 274-629 2-397 (397)
30 KOG1936 Histidyl-tRNA syntheta 100.0 7.7E-41 1.7E-45 339.8 25.6 362 273-649 61-517 (518)
31 PLN02734 glycyl-tRNA synthetas 100.0 6.8E-41 1.5E-45 369.6 26.0 370 268-650 87-664 (684)
32 cd00770 SerRS_core Seryl-tRNA 100.0 6.5E-41 1.4E-45 347.7 18.5 265 252-556 15-296 (297)
33 PRK05431 seryl-tRNA synthetase 100.0 1.5E-39 3.2E-44 351.6 19.0 262 253-557 134-416 (425)
34 cd00778 ProRS_core_arch_euk Pr 100.0 3.3E-39 7.2E-44 329.3 18.9 247 258-543 6-260 (261)
35 TIGR00414 serS seryl-tRNA synt 100.0 4.3E-39 9.4E-44 347.4 18.4 267 252-556 136-417 (418)
36 cd00779 ProRS_core_prok Prolyl 100.0 6.9E-39 1.5E-43 325.9 17.8 245 260-544 8-255 (255)
37 PLN02678 seryl-tRNA synthetase 100.0 1.5E-37 3.2E-42 333.6 17.4 285 222-556 120-423 (448)
38 cd00772 ProRS_core Prolyl-tRNA 100.0 1.1E-36 2.4E-41 310.5 22.7 247 259-544 7-264 (264)
39 PLN02320 seryl-tRNA synthetase 100.0 1.2E-35 2.5E-40 319.8 18.1 265 253-556 197-490 (502)
40 PRK12292 hisZ ATP phosphoribos 100.0 9.4E-34 2E-38 306.0 28.0 302 274-605 5-378 (391)
41 cd00670 Gly_His_Pro_Ser_Thr_tR 100.0 8.6E-34 1.9E-38 286.5 20.7 230 285-542 1-235 (235)
42 KOG4163 Prolyl-tRNA synthetase 100.0 3.6E-34 7.8E-39 290.5 13.5 339 275-649 87-450 (551)
43 PRK00960 seryl-tRNA synthetase 100.0 4.3E-33 9.3E-38 302.0 16.3 267 256-555 195-502 (517)
44 PRK12421 ATP phosphoribosyltra 100.0 4.5E-31 9.7E-36 284.0 27.3 300 274-613 9-383 (392)
45 COG0172 SerS Seryl-tRNA synthe 100.0 6.3E-32 1.4E-36 284.1 17.6 276 223-547 118-404 (429)
46 TIGR00415 serS_MJ seryl-tRNA s 100.0 1.2E-29 2.7E-34 270.5 22.0 262 256-550 195-497 (520)
47 KOG2298 Glycyl-tRNA synthetase 100.0 2.3E-30 5.1E-35 265.8 14.8 368 276-652 36-597 (599)
48 KOG2509 Seryl-tRNA synthetase 100.0 1.6E-30 3.5E-35 266.9 10.2 289 222-556 131-432 (455)
49 PF00587 tRNA-synt_2b: tRNA sy 100.0 3.5E-29 7.5E-34 240.6 14.1 152 288-440 1-154 (173)
50 cd00773 HisRS-like_core Class 99.9 1.3E-26 2.9E-31 237.5 21.7 236 286-541 2-260 (261)
51 TIGR00443 hisZ_biosyn_reg ATP 99.9 2.3E-26 4.9E-31 241.7 19.2 153 279-440 1-153 (314)
52 cd00774 GlyRS-like_core Glycyl 99.9 9.2E-27 2E-31 236.8 12.6 153 275-439 21-177 (254)
53 PRK12293 hisZ ATP phosphoribos 99.9 1.6E-25 3.4E-30 230.0 20.8 147 273-441 6-152 (281)
54 PF13393 tRNA-synt_His: Histid 99.9 1.2E-23 2.6E-28 221.5 19.5 154 277-440 1-155 (311)
55 PRK12295 hisZ ATP phosphoribos 99.9 9.6E-23 2.1E-27 217.3 20.5 140 288-440 6-146 (373)
56 COG3705 HisZ ATP phosphoribosy 99.9 1.6E-21 3.5E-26 204.1 18.3 157 274-440 5-161 (390)
57 COG0013 AlaS Alanyl-tRNA synth 99.8 3.3E-20 7.2E-25 209.5 18.1 154 72-237 544-703 (879)
58 TIGR00344 alaS alanine--tRNA l 99.8 3.6E-20 7.8E-25 215.0 18.7 163 63-237 524-696 (851)
59 PLN02900 alanyl-tRNA synthetas 99.8 2.9E-20 6.3E-25 216.2 17.6 163 63-237 562-736 (936)
60 PRK00252 alaS alanyl-tRNA synt 99.8 3.9E-20 8.4E-25 215.7 16.4 165 63-237 517-689 (865)
61 PLN02961 alanine-tRNA ligase 99.8 5.4E-20 1.2E-24 183.1 13.5 154 71-234 62-221 (223)
62 PRK13902 alaS alanyl-tRNA synt 99.8 1.4E-19 3E-24 210.5 18.4 165 63-237 559-731 (900)
63 TIGR03683 A-tRNA_syn_arch alan 99.8 1.5E-19 3.3E-24 210.2 18.6 165 63-237 563-735 (902)
64 PRK01584 alanyl-tRNA synthetas 99.8 1.1E-19 2.4E-24 200.4 15.3 141 85-235 447-591 (594)
65 COG2872 Predicted metal-depend 99.8 2.6E-18 5.7E-23 169.2 13.5 155 71-236 75-234 (241)
66 cd00768 class_II_aaRS-like_cor 99.8 1.7E-17 3.6E-22 164.3 17.2 208 289-537 2-211 (211)
67 cd00862 ProRS_anticodon_zinc P 99.7 1.1E-17 2.4E-22 163.9 13.7 105 546-650 1-113 (202)
68 cd02426 Pol_gamma_b_Cterm C-te 99.7 4.1E-17 9E-22 147.5 14.1 101 548-648 20-127 (128)
69 cd00858 GlyRS_anticodon GlyRS 99.7 5.5E-17 1.2E-21 146.2 13.7 100 548-647 19-120 (121)
70 PF03129 HGTP_anticodon: Antic 99.7 1.4E-16 3.1E-21 136.9 11.0 90 557-646 1-94 (94)
71 KOG0188 Alanyl-tRNA synthetase 99.7 8.8E-17 1.9E-21 174.0 10.8 161 69-241 545-714 (895)
72 PRK14938 Ser-tRNA(Thr) hydrola 99.7 5.5E-16 1.2E-20 160.7 14.9 112 534-645 249-365 (387)
73 PRK07080 hypothetical protein; 99.7 3.1E-15 6.7E-20 151.0 17.8 241 274-548 35-302 (317)
74 cd00861 ProRS_anticodon_short 99.7 7.2E-16 1.6E-20 132.5 11.0 89 555-643 1-93 (94)
75 KOG2105 Predicted metal-depend 99.6 3.2E-15 7E-20 145.7 8.7 146 68-225 85-233 (415)
76 cd00860 ThrRS_anticodon ThrRS 99.6 1.6E-14 3.4E-19 123.2 11.8 89 555-643 1-90 (91)
77 PRK12294 hisZ ATP phosphoribos 99.6 1.8E-14 3.9E-19 146.7 12.9 135 286-440 7-143 (272)
78 TIGR02367 PylS pyrrolysyl-tRNA 99.5 5.8E-14 1.3E-18 148.3 14.1 138 283-434 236-375 (453)
79 cd00738 HGTP_anticodon HGTP an 99.5 1.4E-13 3E-18 118.1 12.2 89 555-643 1-93 (94)
80 PRK09537 pylS pyrolysyl-tRNA s 99.5 3.1E-13 6.7E-18 143.5 13.6 134 288-435 205-340 (417)
81 PRK04172 pheS phenylalanyl-tRN 99.4 2.7E-12 5.8E-17 142.7 12.5 147 275-434 222-408 (489)
82 cd00859 HisRS_anticodon HisRS 99.3 4.9E-11 1.1E-15 101.0 11.1 87 557-643 3-90 (91)
83 PF07973 tRNA_SAD: Threonyl an 99.0 4.9E-10 1.1E-14 81.2 4.5 42 189-233 1-44 (44)
84 PTZ00326 phenylalanyl-tRNA syn 99.0 1.5E-08 3.3E-13 110.1 17.9 148 279-435 221-416 (494)
85 KOG1035 eIF-2alpha kinase GCN2 98.8 8.8E-08 1.9E-12 111.1 18.3 331 279-647 925-1350(1351)
86 PRK09350 poxB regulator PoxA; 98.7 3.2E-08 6.8E-13 103.5 7.7 110 286-411 5-118 (306)
87 cd00669 Asp_Lys_Asn_RS_core As 98.5 6.1E-07 1.3E-11 92.0 11.4 111 287-416 2-114 (269)
88 COG0442 ProS Prolyl-tRNA synth 98.5 5E-07 1.1E-11 98.9 10.7 233 414-650 115-392 (500)
89 smart00863 tRNA_SAD Threonyl a 98.4 2.7E-07 5.9E-12 67.1 3.6 42 189-233 1-44 (44)
90 COG0173 AspS Aspartyl-tRNA syn 98.3 5.4E-07 1.2E-11 97.2 5.4 116 284-418 139-256 (585)
91 PF01409 tRNA-synt_2d: tRNA sy 98.3 1.7E-05 3.7E-10 80.1 14.6 136 283-430 13-157 (247)
92 cd00777 AspRS_core Asp tRNA sy 98.3 6.5E-06 1.4E-10 85.0 11.3 114 287-418 2-116 (280)
93 cd00776 AsxRS_core Asx tRNA sy 98.2 1E-05 2.2E-10 85.4 11.8 115 284-418 22-138 (322)
94 PF12745 HGTP_anticodon2: Anti 98.2 1.6E-05 3.4E-10 81.3 11.8 97 555-651 5-110 (273)
95 PRK00488 pheS phenylalanyl-tRN 98.1 0.0001 2.2E-09 77.1 16.0 144 274-436 96-245 (339)
96 COG0016 PheS Phenylalanyl-tRNA 98.0 0.0004 8.7E-09 72.2 19.1 143 273-429 98-245 (335)
97 cd00496 PheRS_alpha_core Pheny 98.0 0.00011 2.3E-09 73.3 14.3 125 289-428 3-132 (218)
98 TIGR00459 aspS_bact aspartyl-t 98.0 3.3E-05 7.2E-10 86.8 11.4 115 284-418 136-253 (583)
99 TIGR00468 pheS phenylalanyl-tR 98.0 0.00015 3.3E-09 75.5 15.1 131 284-430 69-204 (294)
100 TIGR00462 genX lysyl-tRNA synt 97.9 2.2E-05 4.8E-10 82.1 8.2 108 287-412 2-114 (304)
101 PRK06462 asparagine synthetase 97.9 5.9E-05 1.3E-09 80.0 10.8 124 284-418 28-152 (335)
102 PF00152 tRNA-synt_2: tRNA syn 97.9 0.00023 5E-09 75.8 15.1 122 285-424 21-147 (335)
103 COG2269 Truncated, possibly in 97.9 2.2E-05 4.9E-10 78.1 6.7 118 286-418 16-136 (322)
104 PLN02853 Probable phenylalanyl 97.9 0.00048 1E-08 75.1 17.3 141 285-434 219-400 (492)
105 cd00775 LysRS_core Lys_tRNA sy 97.8 0.00012 2.6E-09 77.5 11.7 114 286-418 8-123 (329)
106 PRK00476 aspS aspartyl-tRNA sy 97.8 8.6E-05 1.9E-09 84.1 10.9 115 284-418 139-256 (588)
107 KOG2411 Aspartyl-tRNA syntheta 97.8 5.6E-06 1.2E-10 87.5 1.2 114 284-418 176-294 (628)
108 PLN02903 aminoacyl-tRNA ligase 97.8 0.00011 2.4E-09 83.1 11.1 116 284-418 201-319 (652)
109 PRK00484 lysS lysyl-tRNA synth 97.8 0.00018 3.9E-09 80.1 12.5 116 284-418 170-287 (491)
110 PRK05159 aspC aspartyl-tRNA sy 97.8 0.00015 3.3E-09 79.8 11.3 115 284-418 134-251 (437)
111 PRK12820 bifunctional aspartyl 97.8 0.00012 2.6E-09 83.6 10.7 117 284-418 154-271 (706)
112 TIGR00458 aspS_arch aspartyl-t 97.8 0.00017 3.6E-09 79.2 11.2 116 284-418 131-247 (428)
113 PTZ00417 lysine-tRNA ligase; P 97.7 0.00018 3.9E-09 81.1 11.5 115 285-418 252-368 (585)
114 PRK12445 lysyl-tRNA synthetase 97.7 0.00019 4.2E-09 79.9 11.3 115 285-418 183-299 (505)
115 PLN02502 lysyl-tRNA synthetase 97.7 0.00022 4.7E-09 80.1 11.1 116 284-418 227-344 (553)
116 PRK03932 asnC asparaginyl-tRNA 97.7 0.00022 4.7E-09 78.7 11.1 116 284-418 131-255 (450)
117 TIGR00499 lysS_bact lysyl-tRNA 97.7 0.00018 3.9E-09 80.2 10.0 117 284-419 170-288 (496)
118 PTZ00385 lysyl-tRNA synthetase 97.6 0.00034 7.3E-09 79.2 11.6 115 285-418 232-348 (659)
119 PLN02850 aspartate-tRNA ligase 97.6 0.00032 7E-09 78.5 10.6 116 284-418 223-340 (530)
120 PTZ00401 aspartyl-tRNA synthet 97.4 0.00073 1.6E-08 75.8 10.3 116 284-418 211-328 (550)
121 TIGR00457 asnS asparaginyl-tRN 97.4 0.0009 1.9E-08 73.9 10.6 115 285-418 135-258 (453)
122 PRK02983 lysS lysyl-tRNA synth 97.3 0.00071 1.5E-08 82.0 9.0 115 285-418 769-885 (1094)
123 PTZ00425 asparagine-tRNA ligas 97.2 0.0025 5.5E-08 71.6 12.1 36 282-317 211-246 (586)
124 PLN02221 asparaginyl-tRNA synt 97.2 0.0023 5E-08 71.9 11.7 34 284-317 169-202 (572)
125 PLN02532 asparagine-tRNA synth 97.2 0.0025 5.3E-08 72.1 11.3 33 284-316 233-265 (633)
126 PLN02603 asparaginyl-tRNA synt 97.2 0.0029 6.2E-08 71.2 11.8 115 284-417 224-368 (565)
127 COG1190 LysU Lysyl-tRNA synthe 97.2 0.0034 7.3E-08 68.0 11.6 98 286-402 180-278 (502)
128 COG0017 AsnS Aspartyl/asparagi 97.1 0.0032 6.9E-08 67.7 10.8 115 284-418 132-247 (435)
129 KOG1885 Lysyl-tRNA synthetase 96.5 0.0028 6.1E-08 67.3 4.5 116 286-426 225-341 (560)
130 TIGR00470 sepS O-phosphoseryl- 96.3 0.017 3.6E-07 62.4 9.2 88 340-435 180-267 (533)
131 PRK09616 pheT phenylalanyl-tRN 96.1 0.05 1.1E-06 61.9 12.1 134 285-430 357-492 (552)
132 KOG0556 Aspartyl-tRNA syntheta 94.9 0.047 1E-06 57.3 5.8 98 286-402 228-325 (533)
133 cd00769 PheRS_beta_core Phenyl 94.8 0.11 2.3E-06 50.9 7.9 128 290-429 3-139 (198)
134 PLN02788 phenylalanine-tRNA sy 94.5 0.51 1.1E-05 50.9 12.7 134 282-430 63-214 (402)
135 PF02824 TGS: TGS domain; Int 93.5 0.014 3.1E-07 45.3 -0.9 36 48-83 25-60 (60)
136 KOG2784 Phenylalanyl-tRNA synt 93.5 0.072 1.6E-06 55.2 3.9 133 289-431 214-388 (483)
137 KOG0554 Asparaginyl-tRNA synth 92.1 0.34 7.4E-06 51.1 6.5 105 280-403 126-237 (446)
138 PLN02265 probable phenylalanyl 90.8 1.4 3.1E-05 50.7 10.5 134 286-430 396-531 (597)
139 COG2024 Phenylalanyl-tRNA synt 90.7 0.39 8.4E-06 50.2 5.2 66 363-435 202-267 (536)
140 TIGR00471 pheT_arch phenylalan 90.1 1.6 3.5E-05 49.8 10.1 133 285-430 360-494 (551)
141 PRK06253 O-phosphoseryl-tRNA s 85.2 2.6 5.6E-05 46.7 7.5 87 340-434 181-267 (529)
142 KOG0555 Asparaginyl-tRNA synth 81.8 2.1 4.6E-05 45.2 4.9 104 286-411 243-349 (545)
143 cd01667 TGS_ThrRS_N TGS _ThrRS 80.9 1 2.2E-05 33.9 1.8 28 57-84 34-61 (61)
144 TIGR00469 pheS_mito phenylalan 80.1 11 0.00024 41.4 9.8 109 287-405 46-166 (460)
145 COG1854 LuxS LuxS protein invo 72.8 18 0.00039 33.4 7.6 72 79-150 38-112 (161)
146 cd01616 TGS The TGS domain, na 68.7 3 6.4E-05 31.1 1.5 28 56-83 33-60 (60)
147 COG0072 PheT Phenylalanyl-tRNA 67.6 15 0.00033 42.8 7.6 94 285-383 349-444 (650)
148 PF10752 DUF2533: Protein of u 63.8 14 0.0003 30.1 4.4 40 131-170 43-82 (84)
149 TIGR00559 pdxJ pyridoxine 5'-p 63.0 24 0.00051 35.3 6.8 66 534-609 72-149 (237)
150 CHL00192 syfB phenylalanyl-tRN 62.9 13 0.00029 43.7 6.1 128 285-430 396-533 (704)
151 PRK00629 pheT phenylalanyl-tRN 62.7 14 0.00031 44.1 6.4 133 285-430 485-625 (791)
152 PF03740 PdxJ: Pyridoxal phosp 62.3 46 0.001 33.4 8.8 65 534-608 73-149 (239)
153 cd01668 TGS_RelA_SpoT TGS_RelA 61.7 4.9 0.00011 30.4 1.5 28 56-83 33-60 (60)
154 cd00003 PNPsynthase Pyridoxine 61.3 27 0.00058 34.9 6.8 66 534-609 72-149 (234)
155 PF02664 LuxS: S-Ribosylhomocy 56.8 58 0.0013 30.4 7.8 68 85-152 43-114 (157)
156 PRK05265 pyridoxine 5'-phospha 56.5 36 0.00079 34.0 6.9 66 534-609 75-152 (239)
157 TIGR00472 pheT_bact phenylalan 54.7 30 0.00065 41.5 7.2 131 289-430 493-632 (798)
158 PRK02260 S-ribosylhomocysteina 49.8 65 0.0014 30.2 7.0 62 88-149 47-111 (158)
159 COG0854 PdxJ Pyridoxal phospha 45.3 67 0.0015 31.7 6.6 56 553-609 83-150 (243)
160 PF11513 TA0956: Thermoplasma 42.5 1.7E+02 0.0036 24.6 7.5 25 565-589 86-110 (110)
161 PLN03194 putative disease resi 36.8 1.4E+02 0.0029 28.9 7.2 63 553-615 24-92 (187)
162 smart00255 TIR Toll - interleu 34.4 1.9E+02 0.0041 25.7 7.7 63 556-618 2-69 (140)
163 PF02091 tRNA-synt_2e: Glycyl- 34.1 1.3E+02 0.0027 30.6 6.7 62 362-430 39-100 (284)
164 PF03853 YjeF_N: YjeF-related 32.5 1.6E+02 0.0035 27.8 7.1 59 554-612 24-89 (169)
165 PF00731 AIRC: AIR carboxylase 29.8 3.2E+02 0.007 25.4 8.3 55 557-611 2-62 (150)
166 PRK14908 glycyl-tRNA synthetas 29.5 80 0.0017 38.4 5.3 59 363-430 46-106 (1000)
167 PF01520 Amidase_3: N-acetylmu 28.6 1.8E+02 0.0039 27.2 6.8 49 566-614 25-77 (175)
168 PF08357 SEFIR: SEFIR domain; 27.4 1.9E+02 0.0041 26.3 6.6 56 557-613 2-67 (150)
169 PRK06437 hypothetical protein; 27.2 51 0.0011 26.0 2.3 30 55-84 34-63 (67)
170 TIGR03683 A-tRNA_syn_arch alan 25.5 34 0.00073 41.5 1.3 117 289-434 58-180 (902)
171 PRK11092 bifunctional (p)ppGpp 25.3 42 0.00091 39.4 2.0 37 51-87 415-451 (702)
172 PF06183 DinI: DinI-like famil 25.2 2.9E+02 0.0062 21.8 6.1 44 101-148 13-56 (65)
173 cd05569 PTS_IIB_fructose PTS_I 25.1 4.2E+02 0.0091 22.3 8.6 75 568-648 15-92 (96)
174 PRK06488 sulfur carrier protei 24.8 56 0.0012 25.4 2.1 29 56-84 29-61 (65)
175 KOG1547 Septin CDC10 and relat 23.3 2.3E+02 0.005 28.6 6.3 64 565-628 200-266 (336)
176 PRK10597 DNA damage-inducible 23.0 4.4E+02 0.0095 21.8 7.4 67 78-148 2-70 (81)
177 cd02696 MurNAc-LAA N-acetylmur 22.4 3E+02 0.0065 25.6 7.0 51 565-615 25-79 (172)
178 PF07315 DUF1462: Protein of u 22.0 2.7E+02 0.0058 23.5 5.5 43 100-153 24-66 (93)
179 CHL00200 trpA tryptophan synth 21.8 8.2E+02 0.018 25.0 10.4 69 533-613 107-176 (263)
180 PF09886 DUF2113: Uncharacteri 21.2 4.5E+02 0.0098 25.4 7.7 84 65-148 91-185 (188)
181 PF09837 DUF2064: Uncharacteri 21.1 3.1E+02 0.0068 24.3 6.4 57 555-614 10-69 (122)
182 cd02549 Peptidase_C39A A sub-f 21.1 4.8E+02 0.01 22.9 7.9 36 607-644 96-131 (141)
183 PRK00103 rRNA large subunit me 20.8 5.5E+02 0.012 24.0 8.2 78 535-613 13-106 (157)
184 COG0317 SpoT Guanosine polypho 20.6 61 0.0013 37.8 2.1 32 55-86 420-451 (701)
No 1
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.7e-112 Score=970.90 Aligned_cols=593 Identities=44% Similarity=0.835 Sum_probs=571.0
Q ss_pred cCCCCCcccccCcccccccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCeeEEEecC-C
Q 046808 53 TEPAETPSVTQNGKVEQAQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIENGFYYDFDM-E 131 (653)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~~g~~~d~~~-~ 131 (653)
...+.+++.+||.+||+++++..+|+|++++.++.+|.++||||++|||++|++++||+..+.++|++++|+||||+. .
T Consensus 35 ~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~~~~~~g~~iy~hS~~hlL~~A~~~~~~~~~~~i~~~~~~g~y~d~~~~~ 114 (639)
T PRK12444 35 LKKKAVAGKVNDKLYDLRRNLEEDAEVEIITIDSNEGVEIARHSAAHILAQAVKRLYGDVNLGVGPVIENGFYYDMDLPS 114 (639)
T ss_pred cchheEEEEECCEEEEcCcccCCCCeEEEecCCChHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcCCCeEEEEEeCCC
Confidence 456678999999999999999999999999999999999999999999999999999999999999999999999997 6
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCChhhHHHhhhcCC-CCEEEEEECCceeeeecccccccc
Q 046808 132 PLTDKDLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILESIIE-DPITIYHIGEEWWDLCAGPHVETT 210 (653)
Q Consensus 132 ~lt~~~l~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~~~~~-~~v~i~~ig~~~~d~c~G~hv~~T 210 (653)
++|++++.+||++|+++|++|+||++..++++||.++|+..++++|.+|++..+. +.|++|+|| +++|+|+|||||||
T Consensus 115 ~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~~K~~ll~~~~~~~~v~iy~~~-~~~D~c~G~hv~sT 193 (639)
T PRK12444 115 SVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPSGESITLYKQG-EFVDLCRGPHLPST 193 (639)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHhhcCCchHHHHHhcCCCCCeEEEEEEC-CEEEEcCCcCCCCC
Confidence 8999999999999999999999999999999999999999999999999998775 669999999 89999999999999
Q ss_pred ccccccceEEe--------ecCCccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCcccccccccCcceecC
Q 046808 211 GKINKKAVELE--------GDEKKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWH 282 (653)
Q Consensus 211 g~i~~~~f~l~--------~~~k~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~~~~~~G~~~~l 282 (653)
|+| +.|+|. |++++++++|++|++|++.+++++|++..++++++||++||++++||++++ .++|+++|+
T Consensus 194 g~i--k~f~l~~~~~g~~~g~~~~~~l~Ri~g~a~~~~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~-~~~G~~~~~ 270 (639)
T PRK12444 194 GYL--KAFQLTHVSGAYWRGDSNNQVLQRIYGVAFSSQKELEEYLHFVEEAAKRNHRKLGKELELFMFSE-EAPGMPFYL 270 (639)
T ss_pred CCC--ceeEEEEEcceEEcCCCCCcceEEEEEEecCCHHHHHHHHHHHHHhccCCHHHHHHHcCCccccc-ccCcceEEe
Confidence 999 999988 788899999999999999999999999999999999999999999999954 689999999
Q ss_pred ccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhc
Q 046808 283 PKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQ 362 (653)
Q Consensus 283 P~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~ 362 (653)
|.|+.+++.|++++++.+.++||++|.||+|++.++|+++||++.|.++|| +.|.+++.++||||+|+++++++++++.
T Consensus 271 p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy-~~d~~~~~~~LrP~~~~~~~~~~~~~~~ 349 (639)
T PRK12444 271 PKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKLH 349 (639)
T ss_pred eCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcC-eecCCCcEEEEccCCCHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999999999999999 7889999999999999999999999999
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCccc
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEK 442 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~ 442 (653)
||++||+|+||+|+|||+|++|.++||+|+|||+|.|+|+||+++++.+++.++++++.++|+.||+ ++.+.++++|.+
T Consensus 350 sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~~~~~~~i~~~lgl-~~~~~~~~r~~~ 428 (639)
T PRK12444 350 SYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGF-EYEVELSTRPED 428 (639)
T ss_pred ChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEECCccc
Confidence 9999999999999999999998678999999999999999999999888888999999999999999 588999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCccc
Q 046808 443 AVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKR 522 (653)
Q Consensus 443 ~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~ 522 (653)
++|.++.|+.+...+.++|+..|++|.+++++|+||||++|+.+.|..|+.|+|+++++|++++.|||++|.+.+|+...
T Consensus 429 ~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~~~~~~~t~~~d~~~~~~f~l~~~~~~g~~~~ 508 (639)
T PRK12444 429 SMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRSHQCGTIQLDFQMPEKFDLNYIDEKNEKRR 508 (639)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecCCCChhcccceeeecccccccceEEECCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecCh-hhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHH
Q 046808 523 PIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTD-TQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNA 600 (653)
Q Consensus 523 p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~-~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A 600 (653)
|+++|.+++||+||++++|+|++++.||.|++|.||+|+|+++ +..++|.++++.||++|++|++|. +.++++|+++|
T Consensus 509 P~i~~~~~~g~ieRli~~L~e~~~~~~p~~~ap~qV~Ii~~~~~~~~~~a~~la~~LR~~Gi~veid~~~~sl~kq~k~A 588 (639)
T PRK12444 509 PVVIHRAVLGSLDRFLAILIEHFGGAFPAWLAPVQVKVIPVSNAVHVQYADEVADKLAQAGIRVERDERDEKLGYKIREA 588 (639)
T ss_pred cEEEEECCCCCHHHHHHHHHHhcCCCCCCccCCceEEEEEcccHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Confidence 9999999889999999999999888999999999999999998 688999999999999999999999 89999999999
Q ss_pred HHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHhhhc
Q 046808 601 EKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 651 (653)
Q Consensus 601 ~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~~~ 651 (653)
++.|+|+++|||++|+++|+|+||+|++++|.+++++++.+.+++.+++++
T Consensus 589 ~k~g~~~~iiiG~~E~~~~~v~vr~~~t~~q~~i~l~el~~~l~~~~~~~~ 639 (639)
T PRK12444 589 QMQKIPYVLVIGDKEMENGAVNVRKYGEEKSEVIELDMFVESIKEEIKNRK 639 (639)
T ss_pred HHcCCCEEEEEcchhhhcCeEEEEECCCCceeeeeHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999988764
No 2
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=7.6e-112 Score=955.47 Aligned_cols=578 Identities=88% Similarity=1.435 Sum_probs=559.1
Q ss_pred CCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCeeEEEecCCCCCHHHHHHHHHHHHHHHhcCCC
Q 046808 75 ETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRIIGRNLP 154 (653)
Q Consensus 75 ~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~~g~~~d~~~~~lt~~~l~~Ie~~m~~iI~~~~p 154 (653)
+.++|+++++.+.++..+++||++|||++|++++||+..+.+++++++|+||||+..++|++|+++||++||++|++|+|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~~~g~y~D~~~~~lt~edl~~IEk~m~~iI~~n~p 107 (614)
T PLN02837 28 EPERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRIISRNLP 107 (614)
T ss_pred CCceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 55789999999999999999999999999999999999999999999999999987789999999999999999999999
Q ss_pred EEEEEecHHHHHHHHHhcCChhhHHHhhhcCCCCEEEEEECCc-eeeeeccccccccccccccceEEe--------ecCC
Q 046808 155 LVREEVSRDEAKSRIMAIKEPYKMEILESIIEDPITIYHIGEE-WWDLCAGPHVETTGKINKKAVELE--------GDEK 225 (653)
Q Consensus 155 I~~~~~~~~eA~~~~~~~~~~~k~~ll~~~~~~~v~i~~ig~~-~~d~c~G~hv~~Tg~i~~~~f~l~--------~~~k 225 (653)
|++..++++||.++|...++++|.+|++..+.+.|+||+|| + ++|+|+||||+|||+|.++.|+|. ++++
T Consensus 108 I~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig-~~~~D~c~GpHv~sTg~I~~~~~kl~~~~g~ywrg~~~ 186 (614)
T PLN02837 108 LVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIG-EEWWDLCAGPHVERTGKINKKAVELESVAGAYWRGDEK 186 (614)
T ss_pred EEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEEC-CeEEEecCCCCcccccccccceEEEEEeehhhhccccc
Confidence 99999999999999998889999999988777889999999 6 899999999999999988889988 7889
Q ss_pred ccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCC
Q 046808 226 KPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDY 305 (653)
Q Consensus 226 ~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~ 305 (653)
+.+++|+||++|+++++|++|++..+|++++||++||++||||+|++.+|+|+++|+|.|++++++|++++++...++||
T Consensus 187 ~~~l~ri~g~~~~~~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~ 266 (614)
T PLN02837 187 NQMLQRIYGTAWESEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGY 266 (614)
T ss_pred CcceEEEEEEecCCHHHHHHHHHHHHHhhhCCHHHHHHHcCCcccCcCcCCcceEEechHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999977789999999999999999999999999999999
Q ss_pred eEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCC
Q 046808 306 DLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGS 385 (653)
Q Consensus 306 ~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~ 385 (653)
++|.||.|.+.++|+.||||+.|.++||.+.|.+++.|+||||+||.++.+|+++++||++||+|++++|+|||+|.+++
T Consensus 267 ~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~ 346 (614)
T PLN02837 267 DLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGS 346 (614)
T ss_pred EEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCCCC
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999876
Q ss_pred CCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcC
Q 046808 386 LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKG 465 (653)
Q Consensus 386 ~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g 465 (653)
++||+|+|||+|.|+|+||.++++.+++.++++++.++++.||++.+.+.+++++.+++|.++.|++++..|+++|+..|
T Consensus 347 ~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~~~ 426 (614)
T PLN02837 347 LHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSKYEINLSTRPEKSVGSDDIWEKATTALRDALDDKG 426 (614)
T ss_pred CcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCchhccCCHHHHHHHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CceEEcCCCcccccceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhh
Q 046808 466 WDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHY 545 (653)
Q Consensus 466 ~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~ 545 (653)
+.|..++++++||||++|+.+.|.+|+.|+|+|+|+||+++.|||++|.+++|+...|.|+|.+++|++||++++|+|++
T Consensus 427 ~~~~~~~g~~afygpkid~~~~d~~gr~~q~~tiqldf~~~~~f~l~y~~~d~~~~~pv~ih~~~~G~~eRlia~Lie~~ 506 (614)
T PLN02837 427 WEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPERFDITYVDSNSEKKRPIMIHRAILGSLERFFGVLIEHY 506 (614)
T ss_pred CCceeCCCcccccCcceeeEeeccCCceeeecceeEeecchhhcCcEEECCCCCccCCEEEEcCCccCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred cCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeCCCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEE
Q 046808 546 AGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRS 625 (653)
Q Consensus 546 ~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~ 625 (653)
++.||+|++|.||+|+|++++..++|.+|+++||++|++|+++.+.++++|+++|++.|+|++||||++|+++|+|+||+
T Consensus 507 ~g~~P~~laP~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev~~~~slgkkir~A~~~gip~~IiIG~~E~e~~~VtVr~ 586 (614)
T PLN02837 507 AGDFPLWLAPVQARVLPVTDNELEYCKEVVAKLKAKGIRAEVCHGERLPKLIRNAETQKIPLMAVVGPKEVETRTLTVRS 586 (614)
T ss_pred CCCCCCCCCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHcCCCEEEEEcchhhhcCEEEEEE
Confidence 99999999999999999999899999999999999999999955889999999999999999999999999999999999
Q ss_pred CCCCceeeeeHHHHHHHHHHHHhhhcCC
Q 046808 626 RFGGELGTMKVDDFISRIKSATENRTTM 653 (653)
Q Consensus 626 ~~~~~q~~v~~~el~~~i~~~~~~~~~~ 653 (653)
|+++++..++++++++.+++.++++++|
T Consensus 587 r~~geq~~v~~~el~~~l~~~~~~~~~~ 614 (614)
T PLN02837 587 RHGGELGTMPVDDFINRIQLAVENRTSL 614 (614)
T ss_pred CCCCceeEeeHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999875
No 3
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=6.5e-112 Score=968.34 Aligned_cols=593 Identities=39% Similarity=0.706 Sum_probs=566.7
Q ss_pred cccccCCCCCcccccCcccccccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccccc--CeeEE
Q 046808 49 TSVATEPAETPSVTQNGKVEQAQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIE--NGFYY 126 (653)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~--~g~~~ 126 (653)
++...+..+++|.|||++||+++|++.+|+|++++.++.+|.++||||++|||++|++++| +++++++|+++ +||||
T Consensus 78 i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~~eg~~~y~hS~ahlL~~A~~~~~-~~~l~ig~~i~~~~Gfy~ 156 (686)
T PLN02908 78 ISKGLANSALIAQVDGVLWDMTRPLEGDCKLKLFKFDDDEGRDTFWHSSAHILGEALELEY-GCKLCIGPCTTRGEGFYY 156 (686)
T ss_pred hCccchhhcEEEEECCEEeecCccccCCCeeEEeccccHHHHHHHHHHHHHHHHHHHHHHh-CCeEEecCccccCCcEEE
Confidence 3445677888999999999999999999999999999999999999999999999999999 78999999998 99999
Q ss_pred EecC--CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCChhhHHHhhhcC-CCCEEEEEECCceeeeec
Q 046808 127 DFDM--EPLTDKDLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILESII-EDPITIYHIGEEWWDLCA 203 (653)
Q Consensus 127 d~~~--~~lt~~~l~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~~~~-~~~v~i~~ig~~~~d~c~ 203 (653)
|+.. .++|++|+++|+++|+++|++|+||++..++++||+++|+. .++|++|+++.+ .+.|+||+|| +++|+|+
T Consensus 157 d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~--~~~K~~ll~~~~~~~~v~vY~~g-~~~D~c~ 233 (686)
T PLN02908 157 DAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSE--NKFKVEIINDLPEDATITVYRCG-PLVDLCR 233 (686)
T ss_pred EeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhh--CCcHHHHHhhCCCCCeeEEEEEC-CEEEecC
Confidence 9984 57999999999999999999999999999999999999995 566999999887 5579999999 9999999
Q ss_pred cccccccccccccceEEe--------ecCCccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCccccccccc
Q 046808 204 GPHVETTGKINKKAVELE--------GDEKKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDEAG 275 (653)
Q Consensus 204 G~hv~~Tg~i~~~~f~l~--------~~~k~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~~~~~ 275 (653)
||||||||+| +.|+|. |+.++..++|+||++||++++|++|+++.++++++||++||++++||+|. ..+
T Consensus 234 Gphv~sTg~i--k~f~l~~~~~~~~lg~~~~~~lqRi~G~sfp~~~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~-~~~ 310 (686)
T PLN02908 234 GPHIPNTSFV--KAFACLKASSAYWRGDVDRESLQRVYGISFPDKKLLKEYKHRIEEAKKRDHRLLGQKQELFFFH-ELS 310 (686)
T ss_pred CCCCCCCCcc--ceeEEEEecceEEcCCCcchhhEEEeeeccCChHHHHHHHhhhhhccccCHHHHHHhcCCeeec-CCC
Confidence 9999999999 999997 67888899999999999999999999999999999999999999999995 568
Q ss_pred CcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHH
Q 046808 276 GGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHIL 355 (653)
Q Consensus 276 ~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~ 355 (653)
+|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|+.||||+.|.++||.+ |.++++++||||+||+++.
T Consensus 311 ~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~-~~~~~~~~Lrp~~~~~~~~ 389 (686)
T PLN02908 311 PGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVF-EIEKQEFGLKPMNCPGHCL 389 (686)
T ss_pred CcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEE-ecCCeeEEEcCCCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 7788999999999999999
Q ss_pred HHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEE
Q 046808 356 VYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVN 435 (653)
Q Consensus 356 ~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~ 435 (653)
+|+++.+||++||+|+|++|+|||+|.+++++||+|+|||+|.|+|+||+++++.+++.++++++.++++.||+ +|.+.
T Consensus 390 ~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~-~~~~~ 468 (686)
T PLN02908 390 MFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGF-TYELK 468 (686)
T ss_pred HHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCC-cEEEE
Confidence 99999999999999999999999999998778999999999999999999999999989999999999999999 69999
Q ss_pred ecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccccceEEEecCCcccccEEEC
Q 046808 436 LSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVD 515 (653)
Q Consensus 436 l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~ 515 (653)
+++++.+++|..+.|+.++..|.++|++.|.++.+++++++||||++|+.+.|++++.|+|+|+|+||+++.|||+.|.+
T Consensus 469 ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~~~~~~~~g~~afygpkid~~~~d~l~r~~~~~t~q~df~lp~~f~L~Y~~ 548 (686)
T PLN02908 469 LSTRPEKYLGDLETWDKAEAALTEALNAFGKPWQLNEGDGAFYGPKIDITVSDALKRKFQCATVQLDFQLPIRFKLSYSA 548 (686)
T ss_pred EeCCccccCCCHHHHHHHHHHHHHHHHHcCCCcEECCCceeecccceEEEEEeccCCEeeccceeecccCHhhcCCEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC-cccCEEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCH
Q 046808 516 SNSE-KKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERL 593 (653)
Q Consensus 516 ~~g~-~~~p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~ 593 (653)
+++. ...|.++|.+++||+||++++|.|++++.||.|++|.||+|+|++++..++|.++++.||++|++|++|. +.++
T Consensus 549 e~~~~~~~pv~ihrai~GsiERli~iL~e~~~g~~p~wlsp~qv~Vipv~~~~~~~A~~va~~LR~~Gi~vevd~~~~~l 628 (686)
T PLN02908 549 EDEAKIERPVMIHRAILGSVERMFAILLEHYAGKWPFWLSPRQAIVVPISEKSQDYAEEVRAQLHAAGFYVDVDVTDRKI 628 (686)
T ss_pred CCCCcCCCCEEEEeCceEhHHHHHHHHHHHcCCCCCCCCCCceEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Confidence 8776 5789999999999999999999999889999999999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHhhh
Q 046808 594 PKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 650 (653)
Q Consensus 594 ~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~~ 650 (653)
+||+++|++.|+|+++|||++|+++|+|+||+|++++|.+++++++++.++++.+++
T Consensus 629 ~kkir~A~~~g~~~viivG~~E~~~~~V~vr~~~~~~q~~i~l~el~~~l~~~~~~~ 685 (686)
T PLN02908 629 QKKVREAQLAQYNYILVVGEAEAATGTVNVRTRDNVVHGEKKIEELLTEFKEERAEF 685 (686)
T ss_pred HHHHHHHHHcCCCEEEEECchHHhCCEEEEEECCCCceeeeeHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999887765
No 4
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.4e-107 Score=931.94 Aligned_cols=595 Identities=54% Similarity=0.946 Sum_probs=568.8
Q ss_pred cCCCCCcccccCcccccccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCeeEEEecC-C
Q 046808 53 TEPAETPSVTQNGKVEQAQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIENGFYYDFDM-E 131 (653)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~~g~~~d~~~-~ 131 (653)
.....++|.+||.++|+++++..|++|++++..+.+|.++|+||++|||.+|++++||+..+.++|++++|+||||+. .
T Consensus 31 ~~~~~v~a~vng~l~dL~~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~~~~~~~~~~~~~g~y~d~~~~~ 110 (638)
T PRK00413 31 LAKAAVAGKVNGELVDLSTPIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIGPVIENGFYYDFDRER 110 (638)
T ss_pred chhheEEEEECCEEeeCCccccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcCCceEEECCccCCeEEEEEeCCC
Confidence 345667899999999999999999999999999999999999999999999999999999999999999999999987 6
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCChhhHHHhhhcCCC-CEEEEEECCceeeeecccccccc
Q 046808 132 PLTDKDLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILESIIED-PITIYHIGEEWWDLCAGPHVETT 210 (653)
Q Consensus 132 ~lt~~~l~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~~~~~~-~v~i~~ig~~~~d~c~G~hv~~T 210 (653)
++|++++++||++||++|++|+||++..++++||.++|+..++++|++|++..+.+ .|++|+|| +++|+|+|||||||
T Consensus 111 ~lt~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~-~~~d~c~G~hv~~T 189 (638)
T PRK00413 111 PFTPEDLEAIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQG-EFVDLCRGPHVPST 189 (638)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEEC-CEEEECCCCCCCcc
Confidence 79999999999999999999999999999999999999999999999999987765 89999999 89999999999999
Q ss_pred ccccccceEEe--------ecCCccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCcccccccccCcceecC
Q 046808 211 GKINKKAVELE--------GDEKKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWH 282 (653)
Q Consensus 211 g~i~~~~f~l~--------~~~k~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~~~~~~G~~~~l 282 (653)
|+| +.|+|. ++++++.++|++|++|++.+++++|.+..++++.++|+.+++++++|+| +..++|++||+
T Consensus 190 g~i--~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~~l~~~~~~~~e~~~~~h~~l~~~~~~~~~-~~~~~G~~~~l 266 (638)
T PRK00413 190 GKI--KAFKLLKVAGAYWRGDSKNKMLQRIYGTAFADKKELDAYLHRLEEAKKRDHRKLGKELDLFHF-QEEAPGLPFWH 266 (638)
T ss_pred cCC--ceeEEEEEcceEEcCCCcchheEEEEeeecCCHHHHHHHHHHHHHhccccHHHHHHhcCEEEe-cCCCCcceEEc
Confidence 999 999998 5788899999999999999999999999999999999999999999999 45679999999
Q ss_pred ccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhc
Q 046808 283 PKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQ 362 (653)
Q Consensus 283 P~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~ 362 (653)
|.++.++++|++++++.+.++||++|.||+|++.++|.++||++.+.++||.|.|++|+.++||||+||++++++.++.+
T Consensus 267 p~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~r~~~~~~~ 346 (638)
T PRK00413 267 PKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESDGEEYALKPMNCPGHVQIYKQGLR 346 (638)
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCCCcEEEEecCCcHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCccc
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEK 442 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~ 442 (653)
+|+++|+|+||+|+|||+|+++.++||+|+|||+|.|+|+||.++++.++++|++.++.++|+.||++++.+.+++++.+
T Consensus 347 s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~lg~~~~~i~l~~r~~~ 426 (638)
T PRK00413 347 SYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFEDYEVKLSTRPEK 426 (638)
T ss_pred ChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCcc
Confidence 88899999999999999999986789999999999999999999998877789999999999999999999999999878
Q ss_pred ccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCccc
Q 046808 443 AVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKR 522 (653)
Q Consensus 443 ~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~ 522 (653)
.+|.++.|+.+.+.+++.|++.|+++..+++.++||||+++..+.+++|+.++++++++||+++++||+.|.+.+|+...
T Consensus 427 ~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~dl~Yt~~~~~~~~ 506 (638)
T PRK00413 427 RIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQLKDALGREWQCGTIQLDFNLPERFDLTYVGEDGEKHR 506 (638)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEeecCCCCeEEeccEeecccChhhcCCEEECCCCCccC
Confidence 89998899999889999999999999999988899999999999999999999999999999999999999999888888
Q ss_pred CEEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHH
Q 046808 523 PIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAE 601 (653)
Q Consensus 523 p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~ 601 (653)
|.|+|.|++||+||++++|.|++++.||.|++|.||+|+|++++..++|.+++++||++|++|++|+ ++++++|+++|+
T Consensus 507 p~~i~~~~~g~~eRli~~l~e~~~~~~p~~~~p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kki~~A~ 586 (638)
T PRK00413 507 PVMIHRAILGSMERFIGILIEHYAGAFPTWLAPVQVVVLPITDKHADYAKEVAKKLKAAGIRVEVDLRNEKIGYKIREAQ 586 (638)
T ss_pred cEEEEecceehHHHHHHHHHHHcCCCCCcccCcceEEEEEeChhHHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHhh
Confidence 9999988888999999999999888999999999999999999889999999999999999999999 899999999999
Q ss_pred HcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHhhhc
Q 046808 602 KQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 651 (653)
Q Consensus 602 ~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~~~ 651 (653)
+.|+|+++|||++|+++|+|+||+|++++|.+++++++++.|++++++++
T Consensus 587 ~~g~~~~iiiG~~E~~~~~v~vr~~~~~~q~~i~~~~l~~~i~~~~~~~~ 636 (638)
T PRK00413 587 LQKVPYMLVVGDKEVEAGTVSVRRRGGKDLGTMSLDEFIERLLEEIASRS 636 (638)
T ss_pred ccCCCEEEEEcchhhhcCeEEEEECCCCccceeeHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999998875
No 5
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-106 Score=915.98 Aligned_cols=562 Identities=60% Similarity=1.047 Sum_probs=540.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCeeEEEecC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHH
Q 046808 85 ESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIENGFYYDFDM-EPLTDKDLKRIKKEMDRIIGRNLPLVREEVSRD 163 (653)
Q Consensus 85 ~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~~g~~~d~~~-~~lt~~~l~~Ie~~m~~iI~~~~pI~~~~~~~~ 163 (653)
++.+|.++|+||++|||++|++++||+..+.+++++++|+||||+. .++|++++.+||++||++|++|+||++..++++
T Consensus 1 ~~~~g~~~~~hS~~hlL~~A~~~~~~~~~~~~~~~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~e 80 (575)
T PRK12305 1 DSPDGLEVIRHSAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSRE 80 (575)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCceEEeCCCcCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHH
Confidence 3678999999999999999999999999999999999999999998 789999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHhhhcCCCCEEEEEECCceeeeeccccccccccccccceEEe--------ecCCccceeeeccc
Q 046808 164 EAKSRIMAIKEPYKMEILESIIEDPITIYHIGEEWWDLCAGPHVETTGKINKKAVELE--------GDEKKPMLQRIYGT 235 (653)
Q Consensus 164 eA~~~~~~~~~~~k~~ll~~~~~~~v~i~~ig~~~~d~c~G~hv~~Tg~i~~~~f~l~--------~~~k~~~l~Ri~g~ 235 (653)
||.++|+. +++|.+|++..+++.|+||+|| +++|+|+||||+|||+| +.|+|. |+++++.++|++|+
T Consensus 81 eA~~~f~~--~~~k~~l~~~~~~~~vri~~ig-~~~d~c~Gthv~~T~~i--~~f~i~~~~~~~~~~~~~~~~l~Ri~g~ 155 (575)
T PRK12305 81 EAREEFAN--EPYKLELIDDIPEEGITIYDNG-DFEDLCRGPHVPNTKFI--KAFKLTSVAGAYWRGDEKNPQLQRIYGT 155 (575)
T ss_pred HHHHhCCc--ChhHHHhhhhcCCCeEEEEEEC-CEEEECCCCCCCCccCC--ceeEEEEEcceEECCCCCCcceEEEEEE
Confidence 99999984 8899999998887789999999 89999999999999999 999998 67888999999999
Q ss_pred ccccHHHHHHhhhhhHHhhhchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCc
Q 046808 236 AWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAK 315 (653)
Q Consensus 236 ~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~ 315 (653)
+|++.+++++|++..++++++||++|+++++||++++.+++|+++|+|.++.++++|++++++.+.++||++|.||+|++
T Consensus 156 ~~~~~~~l~~~~~~~~e~~~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~ 235 (575)
T PRK12305 156 AWETKEELKEYLKRLEEAKKRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGK 235 (575)
T ss_pred ecCCHHHHHHHHHHHHHhhhccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCC
Confidence 99999999999999999999999999999999999777799999999999999999999999999999999999999999
Q ss_pred hhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceecee
Q 046808 316 ADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGF 395 (653)
Q Consensus 316 ~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF 395 (653)
.++|.++||++.+.++||.+.|.+|+.++||||+||+++++++++..+|++||+|+||+|+|||+|.+++++||+|+|||
T Consensus 236 ~~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF 315 (575)
T PRK12305 236 SDLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGF 315 (575)
T ss_pred HHHHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCe
Confidence 99999999999999999999999999999999999999999999988999999999999999999999767899999999
Q ss_pred EEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCc-ccccCCchhHHHHHHHHHHHHHhcCCceEEcCCC
Q 046808 396 TQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKP-EKAVGGDDIWEKATSALRDALDDKGWDYQIDEGG 474 (653)
Q Consensus 396 ~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~-~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~ 474 (653)
+|.|+|+||.++++.+++++++.++.++|+.||++++.+.+++++ .+++|+++.|+++.+.+++.|+..|++|..++++
T Consensus 316 ~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~~~~i~l~~r~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~ 395 (575)
T PRK12305 316 TQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFKDYYLELSTREPEKYVGDDEVWEKATEALREALEELGLEYVEDPGG 395 (575)
T ss_pred EEcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCC
Confidence 999999999999999988999999999999999988999999998 6778998899999999999999999999999999
Q ss_pred cccccceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhcCCCCCCCC
Q 046808 475 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLS 554 (653)
Q Consensus 475 ~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~~~P~~la 554 (653)
++||||++|+.+.|++|+.|+|+|+++||++++|||++|.+.+|+...|+|+|.|++||+||++++|.|++++.||.|++
T Consensus 396 ~~~y~~~~~~~~~d~~g~~~~~~t~~~~~~~~~~fdl~y~~~~~~~~~p~~ih~~~~G~~eRl~~~l~e~~~~~~p~~~~ 475 (575)
T PRK12305 396 AAFYGPKIDVQIKDALGREWQMSTIQLDFNLPERFDLEYTAEDGKRQRPVMIHRALFGSIERFIGILTEHYAGAFPFWLA 475 (575)
T ss_pred cccccccEEEEeeccCCCceeccceeeecccHhhCCCEEECCCCCccCceEEEccccccHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999998899999999
Q ss_pred CceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceee
Q 046808 555 PIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGT 633 (653)
Q Consensus 555 p~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~ 633 (653)
|.||+|+|++++..++|.+|+++||++|++|++|+ +.++++||++|++.|+|++||||++|+++|+|+||+|++++|.+
T Consensus 476 p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kk~~~A~~~g~p~~iivG~~E~~~~~v~vr~~~~~~q~~ 555 (575)
T PRK12305 476 PVQVVIIPVADAHNEYAEEVAKKLRAAGIRVEVDTSNERLNKKIRNAQKQKIPYMLVVGDKEVEAGTVSVRTRDGEQLNG 555 (575)
T ss_pred CccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEechhhhCCEEEEEEcCCCceee
Confidence 99999999999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred eeHHHHHHHHHHHHhhhc
Q 046808 634 MKVDDFISRIKSATENRT 651 (653)
Q Consensus 634 v~~~el~~~i~~~~~~~~ 651 (653)
++++++++.|++.+++++
T Consensus 556 v~~~~l~~~l~~~~~~~~ 573 (575)
T PRK12305 556 MPLDEFIELIKEKIAERE 573 (575)
T ss_pred eeHHHHHHHHHHHHhccc
Confidence 999999999999998875
No 6
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-102 Score=851.24 Aligned_cols=572 Identities=53% Similarity=0.962 Sum_probs=546.6
Q ss_pred CcccccCcccccccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCeeEEEecC-CCCCHH
Q 046808 58 TPSVTQNGKVEQAQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIENGFYYDFDM-EPLTDK 136 (653)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~~g~~~d~~~-~~lt~~ 136 (653)
.+..+|| .+|+.. +.++..+.++....|||++|||+.|+.++||+ +.+|+.+++||||||+. .++|++
T Consensus 3 ~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~rhs~ah~l~~av~~l~p~--~~~gp~ie~gfyyd~~~~~~~~~~ 71 (589)
T COG0441 3 LAIHVDG-ELDLKD--------EIITAEDEEGLEIIRHSCAHVLAQAVKRLYPD--VTIGPVIEEGFYYDFDVKEPITPE 71 (589)
T ss_pred eEEEccc-ceeccc--------cccCccCccchhhhhhHHHHHHHHHHHHhCCC--ccccCcccceeEEeeccCCCCCHH
Confidence 3455677 677666 33333444999999999999999999999998 88999999999999998 679999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCChhhHHHhhhcCCCCEEEEEECCceeeeecccccccccccccc
Q 046808 137 DLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILESIIEDPITIYHIGEEWWDLCAGPHVETTGKINKK 216 (653)
Q Consensus 137 ~l~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~~~~~~~v~i~~ig~~~~d~c~G~hv~~Tg~i~~~ 216 (653)
|+.+||++|++++++++||++..+++++|++.|. +||+++++..+ .++++|+.| +|.|+|.||||||||.|
T Consensus 72 dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~f~----~yK~~~i~~~~-~~~s~y~~~-~~~dlc~gph~~~t~~i--- 142 (589)
T COG0441 72 DLLKIEKEMKEIAKENLPIEREVVSREEARAPFG----PYKAELIDCKG-HPLSEYSQG-EFVDLCRGPHVPSTGKI--- 142 (589)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEecHHHHHHHhh----hhHHHHHhcCC-CCceeEecC-ccccccCCCCCCccceE---
Confidence 9999999999999999999999999999999998 89999999998 899999999 89999999999999999
Q ss_pred ceEEe--------ecCCccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCcccccccccCcceecCccccHH
Q 046808 217 AVELE--------GDEKKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIV 288 (653)
Q Consensus 217 ~f~l~--------~~~k~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l 288 (653)
.|++. |++++.+++|+||++|.+.++++.|+...++++++||++||++++||+++...++|+..|+|.|+.+
T Consensus 143 ~fkl~~~~~ayw~g~~~~~~l~riygta~~~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~i 222 (589)
T COG0441 143 AFKLLKLAGAYWRGDENNEMLQRIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATI 222 (589)
T ss_pred EEEEEEecchhhccCCCCcceeEEeccccCCHHHHHHHHhhhhhccCCchHhHHHhhcceeeccccCCcceEECCCcccH
Confidence 78887 7899999999999999999999999999999999999999999999999767899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCC
Q 046808 289 RHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFP 368 (653)
Q Consensus 289 ~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP 368 (653)
++.|+++++.....+||++|.||.+...++|+.||||++|.++||.+. .++++|+||||+||+++.+|++..+||++||
T Consensus 223 r~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~-~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP 301 (589)
T COG0441 223 RNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTE-SDDREYALKPMNCPGHILIFKSGLRSYRELP 301 (589)
T ss_pred HHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeec-cCChhheeeeccCHhHHHHHhcCCcceeccc
Confidence 999999999999999999999999999999999999999999999874 4559999999999999999999999999999
Q ss_pred cEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCch
Q 046808 369 IRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDD 448 (653)
Q Consensus 369 ~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~ 448 (653)
+|+++.|.|||+|.+++..||+|+|.|+|.|+|+||.++|..+++..++++...+++.||+.+|.+.++++| +++|+++
T Consensus 302 ~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls~r~-k~ig~d~ 380 (589)
T COG0441 302 LRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTRP-KFIGSDE 380 (589)
T ss_pred hhhhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCC-cccCChh
Confidence 999999999999999999999999999999999999999999999999999999999999988999999999 8999999
Q ss_pred hHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEe
Q 046808 449 IWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHR 528 (653)
Q Consensus 449 ~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~ 528 (653)
.|+.++..|.++|+..|++|..++|+++|||||+|+.+.|++|+.|+|+|||+||.++.||++.|.+.+|+.+.|.|+|+
T Consensus 381 ~W~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQlDf~lpeRF~l~Yv~~d~~~~~PvmiHr 460 (589)
T COG0441 381 MWDKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDEDGEKKRPVIIHR 460 (589)
T ss_pred hhHHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEEEecCChhhceEEEEcCCCCccCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCE
Q 046808 529 AVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPL 607 (653)
Q Consensus 529 ~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~ 607 (653)
|++|+++|++++|+|++.|.+|.|++|.||+|+|++++..++|.+++++|+++|+||++|+ +.++++|++.|...++||
T Consensus 461 ai~GSiERfi~iLiE~~~G~~P~WLaPvQv~VipV~~~~~~ya~~v~~~L~~~giRvdvD~~~e~l~kKIR~a~~~kipy 540 (589)
T COG0441 461 AILGSIERFIGILLEHYAGALPTWLAPVQVRVIPVADEHLDYAKEVAEKLRKAGIRVDIDDRNEKLGKKIREAGTQKIPY 540 (589)
T ss_pred ccchhHHHHHHHHHHhccCCCcccCCccEEEEEEeChHHHHHHHHHHHHHHHcCCeeeecccccchHHHHHHHHhcCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred EEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHhhhc
Q 046808 608 MAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 651 (653)
Q Consensus 608 ~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~~~ 651 (653)
++|||++|++++.|++|.+.++++..++++++++.+++.++++.
T Consensus 541 iiVvG~kE~e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~~~~~ 584 (589)
T COG0441 541 VIVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEIEGRP 584 (589)
T ss_pred EEEEchhhhccCceEEEEccCCccccccHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999988774
No 7
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=2.9e-101 Score=871.68 Aligned_cols=548 Identities=51% Similarity=0.955 Sum_probs=524.1
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEecccccCeeEEEecC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhc
Q 046808 94 RHTCAHVMAMAVQKLYPDAKVTIGPWIENGFYYDFDM-EPLTDKDLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAI 172 (653)
Q Consensus 94 ~hS~~hlL~~A~~~l~~~~~~~~~~~~~~g~~~d~~~-~~lt~~~l~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~~~~~ 172 (653)
|||++|||.+|++++||+..+.+++++++|+||||+. .++|++++.+||++|+++|++|+||++..++++||.++|+ .
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i~~g~~~df~~~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~-~ 79 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVVEDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFK-V 79 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCcCCCceecccCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHh-c
Confidence 6999999999999999999999999999999999987 7899999999999999999999999999999999999999 9
Q ss_pred CChhhHHHhhhc-CCCCEEEEEECCc-eeeeeccccccccccccccceEEe--------ecCCccceeeecccccccHHH
Q 046808 173 KEPYKMEILESI-IEDPITIYHIGEE-WWDLCAGPHVETTGKINKKAVELE--------GDEKKPMLQRIYGTAWENEEQ 242 (653)
Q Consensus 173 ~~~~k~~ll~~~-~~~~v~i~~ig~~-~~d~c~G~hv~~Tg~i~~~~f~l~--------~~~k~~~l~Ri~g~~~~~~~~ 242 (653)
+++||.+|+++. +.+.|++|+|| + ++|+|+||||||||+| +.|+|. +.+++.+++|++|++|++.++
T Consensus 80 ~~~~k~~Ll~~~~~~~~v~vy~~g-~~~~d~~~G~~v~~Tg~i--~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~~ 156 (563)
T TIGR00418 80 LEPYKLELLDEIPNGVKRTPYGWG-KAFVDLCKGPHLPNTSFI--KAFKLEKVAGAYWRGDSKNKMLQRIYGTAWADKKQ 156 (563)
T ss_pred cChhHHHHHhcCCCCCeEEEEEeC-CEEEEEcCCCcCCCCCCC--ceeEEEEeccceEeEcCCCCceEeeeeccCCCHHH
Confidence 999999999997 67889999999 8 9999999999999999 999999 577788999999999999999
Q ss_pred HHHhhhhhHHhhhchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhc
Q 046808 243 LKAYLHFKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKIS 322 (653)
Q Consensus 243 L~~~~e~~eeakk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~s 322 (653)
|++|++..++++.+||++||+++|||++++.+++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.++
T Consensus 157 l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s 236 (563)
T TIGR00418 157 LAAYLLRLEEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEIS 236 (563)
T ss_pred HHHHHHhhhhhhcCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhc
Confidence 99999999999999999999999999996567999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee
Q 046808 323 GHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI 402 (653)
Q Consensus 323 g~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i 402 (653)
||++.|.++||.|.|++|+.++||||+|+++++++.++..++++||+|+||+|+|||+|.++.++||+|+|||+|.|+|+
T Consensus 237 g~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~ 316 (563)
T TIGR00418 237 GHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHI 316 (563)
T ss_pred CCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEE
Confidence 99999999999999999999999999999999999999989999999999999999999887679999999999999999
Q ss_pred eeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCC-cccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccce
Q 046808 403 FCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTK-PEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPK 481 (653)
Q Consensus 403 fg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~-~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~ 481 (653)
||.++++..++.+++.++.++|+.||++.+.+.++++ +.+++|.+..|..+...+.+.|+..|++|.+++++|++|+++
T Consensus 317 ~~~~~~~~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~ 396 (563)
T TIGR00418 317 FCTEDQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPK 396 (563)
T ss_pred EcCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecce
Confidence 9998888888889999999999999998889999987 446788888899999999999999999999999999999999
Q ss_pred eeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEEE
Q 046808 482 IDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVL 561 (653)
Q Consensus 482 ~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi 561 (653)
+++++.|.+|+.|+|+|+|+|+.+|+|||+.|.+.+|+...|+|+|+|+.||+||++++|++++++.||.|++|.||+|+
T Consensus 397 ~~f~~~~~lg~~~~~~t~q~~~~~g~ryd~~~~~~~g~~~~p~ii~~Gfa~gieRli~~l~e~~~~~~p~~~~p~~v~vi 476 (563)
T TIGR00418 397 IDFAFKDALGREWQCATVQLDFELPERFDLTYVDEDNEEKRPVMIHRAILGSIERFIAILLEKYAGNFPLWLAPVQVVVI 476 (563)
T ss_pred EEEEeecCCCCceeeceeeeccCCHhhcCCEEECCCCCEEeeEEEEeeccCcHHHHHHHHHHhccCCCCCcCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999988889999999999888889999999999999
Q ss_pred ecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHH
Q 046808 562 PVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFI 640 (653)
Q Consensus 562 ~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~ 640 (653)
|++++..++|.++++.||++|++|++|+ ++++++|+++|++.|+|++||||++|+++|+|+||+|++++|.++++++++
T Consensus 477 ~~~~~~~~~a~~ia~~LR~~Gi~v~~d~~~~sl~~q~k~A~~~g~~~~iiiG~~E~~~~~v~vk~~~~g~q~~v~~~el~ 556 (563)
T TIGR00418 477 PVNERHLDYAKKVAQKLKKAGIRVDVDDRNERLGKKIREAQKQKIPYMLVVGDKEMESLAVNVRTRKGQKLEKMSLDEFL 556 (563)
T ss_pred EccchHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEchhhhhCCeEEEEECCCCccceeeHHHHH
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q 046808 641 SRIKS 645 (653)
Q Consensus 641 ~~i~~ 645 (653)
+.+++
T Consensus 557 ~~i~~ 561 (563)
T TIGR00418 557 EKLRK 561 (563)
T ss_pred HHHHh
Confidence 88764
No 8
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.9e-93 Score=782.13 Aligned_cols=481 Identities=45% Similarity=0.791 Sum_probs=457.0
Q ss_pred ecHHHHHHHHHhcCChhhHHHhhhcCCCCEEEEEECCceeeeecc-ccccccccccccceEEe-----ecCCccceeeec
Q 046808 160 VSRDEAKSRIMAIKEPYKMEILESIIEDPITIYHIGEEWWDLCAG-PHVETTGKINKKAVELE-----GDEKKPMLQRIY 233 (653)
Q Consensus 160 ~~~~eA~~~~~~~~~~~k~~ll~~~~~~~v~i~~ig~~~~d~c~G-~hv~~Tg~i~~~~f~l~-----~~~k~~~l~Ri~ 233 (653)
++++||+++|. .+++|..+++ ++.|. .|| .++|+|.| |||||||.| ++|+|. |++++.+++|+|
T Consensus 46 ~~~~~~~~~~~--~~~~~~~~~~---~~~~~--~~~-~~~~~~~~~ph~~~t~~~--~~fkl~~~~~~g~~~~~~l~Riy 115 (545)
T PRK14799 46 ITLDEVKKAIN--ENVLANVSIE---NNQIV--YKG-NKVSIIEDKVSISTNLNP--KYFEILNISTHHPNPNEQYVRIR 115 (545)
T ss_pred ccHHHHHHHHh--cCcceeeEee---cCcEE--Ecc-CceeecCCCCCCCCCCCc--ceEEEEEeccCCCccCceeEEEE
Confidence 46677888777 5677777765 45555 499 89999999 999999999 999999 788999999999
Q ss_pred ccccccHHHHHHhhhhhHHhhhchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCcc
Q 046808 234 GTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHV 313 (653)
Q Consensus 234 g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~l 313 (653)
|++|+++++|++|++..+|++++||++||++|+||+|++.+++|+++|+|.|+.+++.|++++++.+.++||++|.||+|
T Consensus 116 g~~f~~~~~l~~~~~~~eea~~rdHr~lg~~l~lf~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i 195 (545)
T PRK14799 116 GVAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHV 195 (545)
T ss_pred EeecCCHHHHHHHHHHHHhcccCCHHHHHHHcCCcccccccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCcc
Confidence 99999999999999999999999999999999999997778999999999999999999999999999999999999999
Q ss_pred CchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceec
Q 046808 314 AKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVR 393 (653)
Q Consensus 314 e~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~R 393 (653)
++.++|+.|||++.|.++||.+ |.++++++||||+||+++.+|+++.+||++||+|++++|+|||+|.++..+||+|+|
T Consensus 196 ~~~eL~k~SGh~~~y~~~mf~~-~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvR 274 (545)
T PRK14799 196 FKTDIWKISGHYTLYRDKLIVF-NMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVR 274 (545)
T ss_pred chHHHHhhccccccchhhccee-eccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccce
Confidence 9999999999999999999998 788999999999999999999999999999999999999999999999789999999
Q ss_pred eeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC--eEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEc
Q 046808 394 GFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN--KYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQID 471 (653)
Q Consensus 394 EF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~--~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~ 471 (653)
||+|+|+|+||+++++.+++.++++++.++++.||++ ++.+.++++|.+++|.++.|+++...++++|++.|++|.+.
T Consensus 275 eF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~ 354 (545)
T PRK14799 275 GFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIK 354 (545)
T ss_pred eEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEe
Confidence 9999999999999999888889999999999999995 59999999999899999999999999999999999999999
Q ss_pred CCCcccccceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhcCCCCC
Q 046808 472 EGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPL 551 (653)
Q Consensus 472 ~~~~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~~~P~ 551 (653)
++.++||||++|+.+.|++|+.|+|+|+|+||++++||++.|.+.+|+...|.|+|.|++||+||++++|++++++.||.
T Consensus 355 ~g~gafygpkiD~~v~dalgr~~q~~Tiqldf~lp~rf~Ley~~~~~~~~~pv~ihr~~~GgiERli~iL~e~~~G~~P~ 434 (545)
T PRK14799 355 EKEGAFYGPKIDFEIRDSLGRWWQLSTIQVDFNLPERFKLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPT 434 (545)
T ss_pred cceeccccCccceEehhhcCchhhhhhhhhhcCcccccceEEEcCCCCCcccEEEEccCCCCHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999998888899999999999999999999987889999
Q ss_pred CCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCc
Q 046808 552 WLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGE 630 (653)
Q Consensus 552 ~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~ 630 (653)
|++|.||+|+|++++..++|.++++.||++|++|++|+ ++++++|+++|++.|+|+++|||++|+++|+|+||+|++++
T Consensus 435 wlaP~qV~Iipi~e~~~~~A~~Ia~~LR~~GirVelD~~~~~lgkkir~A~k~gip~viIIG~~E~e~~~VtVR~r~~~e 514 (545)
T PRK14799 435 WLSSVQVRVLPITDEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARGNIE 514 (545)
T ss_pred CCCCceEEEEEcCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEChhHhhcCeEEEEECCCCc
Confidence 99999999999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred eeeeeHHHHHHHHHHHHhhhc
Q 046808 631 LGTMKVDDFISRIKSATENRT 651 (653)
Q Consensus 631 q~~v~~~el~~~i~~~~~~~~ 651 (653)
|.+++++++++.+.+.+.+++
T Consensus 515 q~~v~l~eli~~l~~~i~~~~ 535 (545)
T PRK14799 515 VRNVKFEKFLELLITEIAQRD 535 (545)
T ss_pred eEEEcHHHHHHHHHHHHhhcc
Confidence 999999999999999988763
No 9
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-91 Score=712.23 Aligned_cols=527 Identities=39% Similarity=0.702 Sum_probs=496.6
Q ss_pred ccccCCCCCcccccCcccccccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCeeEEEec
Q 046808 50 SVATEPAETPSVTQNGKVEQAQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIENGFYYDFD 129 (653)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~~g~~~d~~ 129 (653)
|-++|..++.+.|||++||+++|++.+| +++++.++.++..++|||++|+|+.|+.+.| ++++++|+.+++|||||+
T Consensus 27 s~~la~~~~~~~vn~~~~Dl~rp~e~~~-lell~f~~~~~k~vfwhssahvlg~a~e~~~-g~~lc~Gpp~~~gf~yd~- 103 (560)
T KOG1637|consen 27 SKGLADDAVIAKVNGVLWDLDRPLEGDC-LELLKFDDDEGKDVFWHSSAHVLGEALEQEY-GAHLCIGPPIEEGFYYDM- 103 (560)
T ss_pred ccchhhhhHHHhhcCceeccCCcchhhH-HHHccCCCcccceeeeehhhhHhhHHHHHhc-CeeEeeCCCCcCceehhh-
Confidence 7789999999999999999999999999 9999999999999999999999999999999 589999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCChhhHHHhhhcCCCCEEEEEECCceeeeeccccccc
Q 046808 130 MEPLTDKDLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILESIIEDPITIYHIGEEWWDLCAGPHVET 209 (653)
Q Consensus 130 ~~~lt~~~l~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~~~~~~~v~i~~ig~~~~d~c~G~hv~~ 209 (653)
...++.+|+..||. |||++
T Consensus 104 ~~~i~~~d~~~~e~-------------------------------------------------------------phi~~ 122 (560)
T KOG1637|consen 104 LDEISSNDFPSIEA-------------------------------------------------------------PHIRH 122 (560)
T ss_pred hccccccccccccc-------------------------------------------------------------ccccc
Confidence 34456555555542 99999
Q ss_pred cccccccceEEeecCCccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCcccccccccCcceecCccccHHH
Q 046808 210 TGKINKKAVELEGDEKKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVR 289 (653)
Q Consensus 210 Tg~i~~~~f~l~~~~k~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~ 289 (653)
||.| ++|++..+++.... |.++|+++++++|.++.+|++.+|||+||++++||.| ...+||.++|+|.|+++.
T Consensus 123 tg~i--ka~k~~~nss~yw~----~~sfp~~k~~k~~~~~~~Ea~~rdHRkig~~qeLfff-~~lSPGS~FflP~G~~iy 195 (560)
T KOG1637|consen 123 TGKI--KAFKILKNSSAYWE----GDSFPDPKQLKEWEKFQEEAKKRDHRKIGKEQELFFF-HELSPGSCFFLPHGTRIY 195 (560)
T ss_pred ccee--eeeeeeccchhhhc----cccCCCHHHHHHHHhhchhhhhhhhhhhhhhhhheee-ccCCCcceeeccCcchHH
Confidence 9999 99999955443333 3388999999999999999999999999999999999 678999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCc
Q 046808 290 HIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPI 369 (653)
Q Consensus 290 ~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~ 369 (653)
+.+.++++..+.+.||+||.||.+-+.+||++||||++|.++||+|. .+.++++|.||+||+++.++++.-+||+.||+
T Consensus 196 N~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e-~eke~~~LKPMNCPgHcLmf~~r~rS~reLPl 274 (560)
T KOG1637|consen 196 NTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFE-VEKEEFALKPMNCPGHCLMFAHRDRSYRELPL 274 (560)
T ss_pred HHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeee-echhhhccCccCCCccccccccCCccHhhCCc
Confidence 99999999999999999999999999999999999999999999984 46678999999999999999999999999999
Q ss_pred EEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchh
Q 046808 370 RVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDI 449 (653)
Q Consensus 370 rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~ 449 (653)
|++.+|..+|+|.++++.||.|+|.|.|.|+||||+++|..+++.-+++....++.-+|+ .+.+.+|++|.+++|+.+.
T Consensus 275 R~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~fl~~vY~~fgf-~f~l~lSTRPe~~lG~l~~ 353 (560)
T KOG1637|consen 275 RFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDFLDYVYGVFGF-TFKLNLSTRPEKFLGDLET 353 (560)
T ss_pred cccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHHHHHHHHhccc-cceeEeccChHHhccCHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 7999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEec
Q 046808 450 WEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRA 529 (653)
Q Consensus 450 ~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~ 529 (653)
|++|+..|+++|++.|-++++++|+|||||||+|+.+.|++|+..+|.|||+||+++-|||+.|.+.+|..+.|+|+|.+
T Consensus 354 Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l~Dal~r~hQcaTIQLDFqLP~rFdL~y~~~~g~~erPVmIHRA 433 (560)
T KOG1637|consen 354 WDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITLDDALGRKHQCATIQLDFQLPIRFDLEYETEDGDLERPVMIHRA 433 (560)
T ss_pred HHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEhhhhcCcccceeeeeecccChhhcCceeecccccccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEE
Q 046808 530 VLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLM 608 (653)
Q Consensus 530 i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~ 608 (653)
|+|+++|+++.|+|+++++||.|++|.|+.|||+++....+|.+|..+|+.+|+-+.+|. +.+++|+++.|...+..++
T Consensus 434 IlGSvERmiaiL~E~~~gkwPFWlSPRq~~vIpVse~~~~ya~~V~~ql~~a~f~~Dld~t~~tl~kkir~Aqla~yn~i 513 (560)
T KOG1637|consen 434 ILGSVERMIAILLESYGGKWPFWLSPRQAVVIPVSEGPLDYATSVQKQLEEAGFYVDLDPTDSTLRKKIRNAQLAHYNFI 513 (560)
T ss_pred HhhhHHHHHHHHHHHhCCCCCeeeccceEEEEECCCcchhHHHHHHHHHHhhhceeecCCccchHHHHHhhhhhcceeEE
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEECcccccCCeEEEEECC---CCceeeeeHHHHHHHHHHHHhh
Q 046808 609 AVVGAKEVDAQTVTVRSRF---GGELGTMKVDDFISRIKSATEN 649 (653)
Q Consensus 609 iiiG~~e~~~~~V~vk~~~---~~~q~~v~~~el~~~i~~~~~~ 649 (653)
+|||++|.+.++|.||.|+ +..+.+++++++.+.++++-..
T Consensus 514 ~VVGdkE~~~~~vnVr~Rd~~~~~~~~~~tie~~~~~~~~l~~~ 557 (560)
T KOG1637|consen 514 FVVGDKEVETGRVNVRTRDNRDNKTESEMTIEELSDEFKELKSE 557 (560)
T ss_pred EEEchhhhhcCceeeeccccccccccceeeHHHHHHHHHHhHhh
Confidence 9999999999999999984 4456688999998888776544
No 10
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.8e-67 Score=585.35 Aligned_cols=414 Identities=30% Similarity=0.480 Sum_probs=375.6
Q ss_pred cceeeecccccccHHHHHHhhhhhHH------hhhchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHH
Q 046808 227 PMLQRIYGTAWENEEQLKAYLHFKEE------AKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSH 300 (653)
Q Consensus 227 ~~l~Ri~g~~~~~~~~L~~~~e~~ee------akk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~ 300 (653)
+.+.+.....+...+.|+.+.+ .|- ...+||++||+++|||+|++.+++|+..|+|.|+.++++|++++++.+
T Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~-~e~~~~~~~~~~~dH~~Lg~~~~L~d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~ 241 (613)
T PRK03991 163 GELHDPEEFDFSGYEDLKALVD-YEVGKKELVGGEPPHVKLMREKELADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLV 241 (613)
T ss_pred CCeecccccccCCcHHHHHHHH-HHhhccccCCCCCCHHHHHHHCCCcccccccCeeeEEEEcHHHHHHHHHHHHHHHHH
Confidence 3455666655555555666554 222 224599999999999999766789999999999999999999999999
Q ss_pred HhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeee-eee
Q 046808 301 IEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGT-VYR 379 (653)
Q Consensus 301 ~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~-~fR 379 (653)
.++||++|.||.+.+.++|..+||++.|.++||.+ +.++++++||||+|++++.+|+++.+||++||+|++++|+ |||
T Consensus 242 ~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v-~~~~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR 320 (613)
T PRK03991 242 VELGAMPVETPIMYDLSHPAIREHADKFGERQYRV-KSDKKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFR 320 (613)
T ss_pred HHCCCEEEECCeecChhHHhhcccccccchhceEe-cCCCceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchhee
Confidence 99999999999999999999999999999999997 4557899999999999999999999999999999999999 999
Q ss_pred cCCCCCCCCcceeceeEEcceeeeeCc-hhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHH
Q 046808 380 YELSGSLHGLFRVRGFTQDDAHIFCLE-DQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALR 458 (653)
Q Consensus 380 ~E~~~~~~GL~R~REF~q~d~~ifg~~-~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~ 458 (653)
+|.++..+||+|+|||+|.|+|+||.+ +++.+++.++++++.++++.||++ +.+.++.. .+.|+.....|+
T Consensus 321 ~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~-~~~~~~~t-------~df~~~~~~~l~ 392 (613)
T PRK03991 321 LEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRD-YEVAIRFT-------EDFYEENKDWIV 392 (613)
T ss_pred CCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEecCH-------HHHhhhHHHHHH
Confidence 999987799999999999999999996 999999999999999999999995 66655532 245777777789
Q ss_pred HHHHhcCCceEE--cCCCcccccceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecccCchHH
Q 046808 459 DALDDKGWDYQI--DEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLER 536 (653)
Q Consensus 459 ~~l~~~g~~~~~--~~~~~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieR 536 (653)
++++..|.++.+ .++.++||||++|+.+.|.+|+.|+|+|+|+|++.+.+||++|.+.+|+.+.|.++|++++||++|
T Consensus 393 ~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d~~gr~~q~~T~qld~~~~~~f~l~y~d~~g~~~~Pviih~~~~GsieR 472 (613)
T PRK03991 393 ELVKREGKPVLLEILPERKHYWVLKVEFAFIDSLGRPIENPTVQIDVENAERFGIKYVDENGEEKYPIILHCSPTGSIER 472 (613)
T ss_pred HHHHHcCCCEEecccCCccccCcCcEEEEEeCCCCCEEEEeeeecCcccchhCCCEEECCCCCEeeCEEEEECCEeHHHH
Confidence 999999999877 577889999999999999999999999999999999999999999999888888877666888999
Q ss_pred HHHHHHHhhcCC--------CCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCE
Q 046808 537 FFGVLIEHYAGD--------FPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPL 607 (653)
Q Consensus 537 li~~L~e~~~~~--------~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~ 607 (653)
++++|+|++++. ||.|++|+||+|+|++++..++|.++++.||++|++|++|+ +.++|+|+++|++.|+|+
T Consensus 473 ~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~e~~~~~A~eIa~~Lr~~GirV~lDdr~~slgkKir~A~~~GiP~ 552 (613)
T PRK03991 473 VIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVSERHLDYAEEVADKLEAAGIRVDVDDRDESLGKKIRDAGKEWIPY 552 (613)
T ss_pred HHHHHHHHhCCccccCceeEcCccccCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCE
Confidence 999999998876 99999999999999999999999999999999999999999 899999999999999999
Q ss_pred EEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHhhh
Q 046808 608 MAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 650 (653)
Q Consensus 608 ~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~~ 650 (653)
+||||++|+++|+|+||+|+++++..++++++++.|++.++.+
T Consensus 553 iIVIG~kEle~g~VtVr~R~t~eq~~v~l~eli~~l~~~~~~~ 595 (613)
T PRK03991 553 VVVIGDKEMESGKLTVTIREESEKVEMTLEELIERIKEETKGY 595 (613)
T ss_pred EEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999988765
No 11
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.8e-62 Score=535.03 Aligned_cols=382 Identities=19% Similarity=0.289 Sum_probs=336.7
Q ss_pred hhHHhhhchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccc
Q 046808 249 FKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFY 328 (653)
Q Consensus 249 ~~eeakk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~ 328 (653)
...++...+|+.|.+. |+|. ..++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|+.+|||+.|
T Consensus 14 ~~~~~~~~~~~ll~r~-g~~~---~~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~ 89 (439)
T PRK12325 14 NPKEAEIVSHRLMLRA-GMIR---QQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAY 89 (439)
T ss_pred CccccchHHHHHHHHc-CCcc---ccCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCcccc
Confidence 4456778899999998 8763 36999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCc-h
Q 046808 329 RENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE-D 407 (653)
Q Consensus 329 ~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~-~ 407 (653)
.++||.+.|.++++++||||+|+.++.++++++.||++||+|+||+|+|||+|.++ +.||+|+|||+|.|+|+||.+ +
T Consensus 90 ~~emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~-~~GL~R~reF~~~D~h~f~~~~~ 168 (439)
T PRK12325 90 GKEMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRP-RFGVMRGREFLMKDAYSFDLDEE 168 (439)
T ss_pred chhheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCC-CCCccccceEeEeccEEEeCCHH
Confidence 99999999999999999999999999999999999999999999999999999777 699999999999999999876 6
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCccc-----------ccCCc-----------------hhHHHHHHHHHH
Q 046808 408 QIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEK-----------AVGGD-----------------DIWEKATSALRD 459 (653)
Q Consensus 408 ~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~-----------~~g~~-----------------~~~~~~~~~l~~ 459 (653)
++.+++.++++++.++|+.|||+.+.+.+++++.. ..|.+ ..|+. ..+++
T Consensus 169 ~a~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~--~~l~~ 246 (439)
T PRK12325 169 GARHSYNRMFVAYLRTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDV--ADLQP 246 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCH--HHHHH
Confidence 68888999999999999999998888888777621 12222 23554 66777
Q ss_pred HHHhcCCceEE---cCCCcccc-cceeeEEEec--ccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecccCc
Q 046808 460 ALDDKGWDYQI---DEGGGAFY-GPKIDLKIED--ALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGS 533 (653)
Q Consensus 460 ~l~~~g~~~~~---~~~~~~~~-g~~~d~~~~d--~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~Gg 533 (653)
+|+..+..|.. ..+.+++| +|+.++...+ ..|+.|++++. ++.+||++|.+++|+....+|+|+|+ |
T Consensus 247 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ievg~~~~lg~~-----ys~~f~~~y~d~~g~~~~i~~~~~Gi--G 319 (439)
T PRK12325 247 IVDEWTSLYAATEEMHDEAAFAAVPEERRLSARGIEVGHIFYFGTK-----YSEPMNAKVQGPDGKEVPVHMGSYGI--G 319 (439)
T ss_pred HHhhhcccccchhhhhccCCCCcCCCcceeecceEEEEeeecCccc-----ccHhcCCEEECCCCCEEeEEEeeeEC--C
Confidence 88776655422 23456888 9987776554 45666666652 36789999999999999999999997 7
Q ss_pred hHHHHHHHHHhh----cCCCCCCCCCceEEEEec---ChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCC
Q 046808 534 LERFFGVLIEHY----AGDFPLWLSPIQARVLPV---TDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKI 605 (653)
Q Consensus 534 ieRli~~L~e~~----~~~~P~~lap~~v~Vi~~---~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gi 605 (653)
++|++++|+|++ ++.||.|++|+||+|+|+ +++..++|.+|++.||++|++|++|+ +.++|+|+++|++.|+
T Consensus 320 ieRli~~l~e~~~d~~g~~~P~~iaP~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~~~~lg~ki~~a~~~gi 399 (439)
T PRK12325 320 VSRLVAAIIEASHDDKGIIWPESVAPFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDTDERPGAKFATMDLIGL 399 (439)
T ss_pred HHHHHHHHHHHhCccCCCcCCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHhHHHHHHHHcCC
Confidence 999999999997 569999999999999999 57788999999999999999999999 8999999999999999
Q ss_pred CEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHH
Q 046808 606 PLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 644 (653)
Q Consensus 606 p~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~ 644 (653)
|++||||++|+++|+|+||+|+++++..++++++++.|+
T Consensus 400 P~~iiVG~~e~~~~~V~vr~r~~~~~~~v~~~el~~~i~ 438 (439)
T PRK12325 400 PWQIIVGPKGLAEGKVELKDRKTGEREELSVEAAINRLT 438 (439)
T ss_pred CEEEEECCcccccCeEEEEEcCCCceEEEEHHHHHHHHh
Confidence 999999999999999999999999999999999988764
No 12
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=9.4e-61 Score=497.17 Aligned_cols=298 Identities=62% Similarity=1.140 Sum_probs=287.5
Q ss_pred hhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceec
Q 046808 257 DHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM 336 (653)
Q Consensus 257 ~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~ 336 (653)
||++||+++++|+|++.+++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.++||++.|.++||.+
T Consensus 1 dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~- 79 (298)
T cd00771 1 DHRRLGGELELFFFFDEAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPF- 79 (298)
T ss_pred ChhHHHHHcCCcccCCCCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEe-
Confidence 6999999999999987789999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHH
Q 046808 337 NIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAV 416 (653)
Q Consensus 337 d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~ 416 (653)
+.+++.++||||+|+++++++++++.++++||+|++|+|+|||+|.++.++||+|+|||+|.|+|+||.++++.+++.++
T Consensus 80 ~~~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~ 159 (298)
T cd00771 80 EEEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGV 159 (298)
T ss_pred ccCCceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHH
Confidence 45668999999999999999999999999999999999999999998767999999999999999999999988887899
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccc
Q 046808 417 LDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQC 496 (653)
Q Consensus 417 l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~ 496 (653)
++++.++++.||++.+.+.+++++.++.|+.+.|+.+++.+++++...|++|++++|+++|||||+|+.+.|++|+.|||
T Consensus 160 l~~~~~~l~~lgl~~~~i~l~~~~~~~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~ 239 (298)
T cd00771 160 LDLIKEVYSDFGFFDYKVELSTRPEKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDALGREWQC 239 (298)
T ss_pred HHHHHHHHHHcCCCcEEEEEEcChhHhcCCHHHHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEEEEeCCCCeeec
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhcCCCCCCCCC
Q 046808 497 STIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSP 555 (653)
Q Consensus 497 ~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap 555 (653)
+|+|+||+++.|||++|.+++|+.+.|.|+|.+++|++||+|++|+|+++|.||.|++|
T Consensus 240 ~t~qld~~~~~~f~l~y~~~~~~~~~pv~ih~~~~Gs~eR~i~~l~e~~~g~~P~wlaP 298 (298)
T cd00771 240 STIQLDFNLPERFDLTYIGEDGEKKRPVMIHRAILGSIERFIGILIEHYAGKFPLWLAP 298 (298)
T ss_pred ceeEeeccChhhcCCEEEccCCCccCCEEEEeCCCCcHHHHHHHHHHhhCCCCCCccCc
Confidence 99999999999999999999999999999999999999999999999999999999998
No 13
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2e-56 Score=491.36 Aligned_cols=357 Identities=22% Similarity=0.333 Sum_probs=315.3
Q ss_pred hhhchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhh-cCcccccccc
Q 046808 253 AKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKI-SGHLDFYREN 331 (653)
Q Consensus 253 akk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~-sg~~~~~~~~ 331 (653)
.-..-|.+++++.+|+++.. .+|+++|+|.|+.++++|++++++.+.++||++|.||.|.+.++|.+ +||++.|.++
T Consensus 13 ~f~~w~~~~~~~~~l~d~~~--v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e 90 (477)
T PRK08661 13 DFSEWYNDVVKKAELADYSP--VKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPE 90 (477)
T ss_pred chHHHHHHHHHHccCcccCC--CCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccc
Confidence 33456999999999988743 68999999999999999999999999999999999999999999965 7999999999
Q ss_pred cceecccC----CceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCc
Q 046808 332 MYDQMNIE----DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLE 406 (653)
Q Consensus 332 ~y~~~d~~----~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~ 406 (653)
||.+.+.+ +++++||||+|+.++.+++++++||++||+|+||+++|||+|.++ +||+|+|||+|.|+|+ ++++
T Consensus 91 ~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~~--rgl~R~rEF~~~E~h~~~~~~ 168 (477)
T PRK08661 91 VAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETKT--RPFLRTREFLWQEGHTAHATE 168 (477)
T ss_pred cEEEEccCCCccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCCC--CCcceeeeEEEcceeeeeCCH
Confidence 99998776 578999999999999999999999999999999999999999995 7999999999999997 5788
Q ss_pred hhHHHHHHHHHHHHHHHH-HHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEE
Q 046808 407 DQIKDEIRAVLDLTEEIL-LQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLK 485 (653)
Q Consensus 407 ~~~~d~~~e~l~~~~~il-~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~ 485 (653)
+++.+++.++++++.+++ +.||||...+ .++ .|++. .++.++..++..
T Consensus 169 eea~~e~~~~l~~y~~i~~~~Lglp~~~~---~~~--------~~ekf--------------------~ga~~~~~ie~~ 217 (477)
T PRK08661 169 EEAEEETLEMLEIYKEFFEDYLAIPVIIG---KKT--------EWEKF--------------------AGADYTYTIEAM 217 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEE---ecC--------hHHhh--------------------CCCcceeEEEEE
Confidence 889999999999999999 9999963322 222 12211 123344455555
Q ss_pred EecccCCcccccceE-EEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhcC----CCCCCCCCceEEE
Q 046808 486 IEDALGRKWQCSTIQ-VDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAG----DFPLWLSPIQARV 560 (653)
Q Consensus 486 ~~d~~g~~~~~~~i~-~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~----~~P~~lap~~v~V 560 (653)
+.| |+.+++++++ ++..++++||++|.+++|+.+.|+++++|+ .+|+|++|+|+|++ .||++++|+||+|
T Consensus 218 ~~d--gr~~q~gt~~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~G~---~~R~i~alie~~~D~~Gl~lP~~iAP~qV~I 292 (477)
T PRK08661 218 MPD--GKALQAGTSHYLGQNFAKAFDIKFQDKDGKLEYVHQTSWGV---STRLIGALIMTHGDDKGLVLPPKIAPIQVVI 292 (477)
T ss_pred eCC--CCEEEEEEecccccchhHhcCCEEECCCCCEeeeEEecccH---HHHHHHHHHHHhCccCCCccCcccCCCeEEE
Confidence 555 8889999985 888889999999999999988888876553 49999999998874 7999999999999
Q ss_pred Eec------ChhhHHHHHHHHHHHHhCCCeEEEeC--CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCcee
Q 046808 561 LPV------TDTQLEYCNEVIKKLKTNGIRAEICH--GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELG 632 (653)
Q Consensus 561 i~~------~~~~~~~a~~la~~Lr~~Gi~v~~d~--~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~ 632 (653)
+|+ +++..++|.+|++.||++|++|++|+ +.++|+|+++|++.|+|++|+||++|+++|+|+|++|+++++.
T Consensus 293 ipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~gkK~~~ae~~GvP~~IiIG~~ele~~~V~ik~rdtgek~ 372 (477)
T PRK08661 293 VPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKFNEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEKE 372 (477)
T ss_pred EEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECcchhhcCeEEEEECCCCceE
Confidence 999 67788999999999999999999998 5899999999999999999999999999999999999999999
Q ss_pred eeeHHHHHHHHHHHHhh
Q 046808 633 TMKVDDFISRIKSATEN 649 (653)
Q Consensus 633 ~v~~~el~~~i~~~~~~ 649 (653)
.++++++.+.+++.+++
T Consensus 373 ~v~~~el~~~l~~~l~~ 389 (477)
T PRK08661 373 TVPLDELVEKVPELLEE 389 (477)
T ss_pred EEEHHHHHHHHHHHHHH
Confidence 99999999998887764
No 14
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=2.8e-56 Score=489.09 Aligned_cols=354 Identities=21% Similarity=0.349 Sum_probs=308.1
Q ss_pred hHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhc-Ccccccccccceec
Q 046808 258 HRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKIS-GHLDFYRENMYDQM 336 (653)
Q Consensus 258 h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~s-g~~~~~~~~~y~~~ 336 (653)
+.+++.+.||+++ ...+|+++|+|.|+.+++.|++++++.+.++||++|.||.|++.++|.++ +|++.|.++||.+.
T Consensus 12 y~~l~~~~~li~~--~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~ 89 (472)
T TIGR00408 12 YHQILEKAEIIDY--YPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWIT 89 (472)
T ss_pred HHHHHHHcCCccc--cCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEe
Confidence 5567777788765 34699999999999999999999999999999999999999999999975 58999999999998
Q ss_pred ccC----CceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEccee-eeeCchhHHH
Q 046808 337 NIE----DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAH-IFCLEDQIKD 411 (653)
Q Consensus 337 d~~----~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~-ifg~~~~~~d 411 (653)
|.+ +++++||||+|++++.+|+++++||++||+|+||+++|||+|.++ ++||+|+|||+|.|+| +|++++++.+
T Consensus 90 ~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~-~~gl~R~rEF~~~e~h~~~~~~e~a~~ 168 (472)
T TIGR00408 90 HGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKH-TRPFLRTREFTWQEAHTAHATAEEAEE 168 (472)
T ss_pred cCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCC-CCCcceeeeeehhhhhhhhCCHHHHHH
Confidence 876 489999999999999999999999999999999999999999998 5999999999999999 5889999999
Q ss_pred HHHHHHHHHHHHHH-HcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEeccc
Q 046808 412 EIRAVLDLTEEILL-QFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDAL 490 (653)
Q Consensus 412 ~~~e~l~~~~~il~-~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~ 490 (653)
++..+++++.++++ .||||...+ ..+...++.|.. +...++..+.|
T Consensus 169 e~~~~l~~y~~i~~~~lglp~~~~-~~~~~ek~~ga~------------------------------~~~~~e~~~~d-- 215 (472)
T TIGR00408 169 QVLRALDIYKEFIENSLAIPYFVG-RKPEWEKFAGAE------------------------------YTWAFETIMPD-- 215 (472)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEE-ecCchhhcCCcc------------------------------ceEEEeEEEcC--
Confidence 99999999999998 999964332 222112222221 11223333444
Q ss_pred CCcccccceE-EEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhcC----CCCCCCCCceEEEEec--
Q 046808 491 GRKWQCSTIQ-VDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAG----DFPLWLSPIQARVLPV-- 563 (653)
Q Consensus 491 g~~~~~~~i~-~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~----~~P~~lap~~v~Vi~~-- 563 (653)
|+.++++|++ +++.++++||++|.+++|+...|++.+ +|-.+|+|++|+|+|++ .||++++|+||+|+|+
T Consensus 216 gr~~q~~t~~~Lg~~~sk~f~i~y~~~~g~~~~~h~~s---~Gi~eRli~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~ 292 (472)
T TIGR00408 216 GRTLQIATSHNLGQNFAKTFEIKFETPTGDKEYAYQTS---YGISTRVIGALIAIHSDEKGLVLPPRVAPIQVVIIPIIF 292 (472)
T ss_pred CCEEEEeeeecccccccHhcCCEEECCCCCEEeeEEcc---ccHHHHHHHHHHHHhCCCCceeeChhhCcceEEEEEccC
Confidence 6888999987 888889999999999999887788754 43139999999998763 7999999999999997
Q ss_pred C----hhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHH
Q 046808 564 T----DTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDD 638 (653)
Q Consensus 564 ~----~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~e 638 (653)
+ ++..++|.+|++.||++|++|++|+ +.++|+|+++|++.|+|++|+||++|+++|+|+||+|++++|..+++++
T Consensus 293 ~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r~~s~gkk~k~Ae~~GvP~~IiIG~~Ele~~~V~ik~rdt~eq~~v~l~e 372 (472)
T TIGR00408 293 KKKENEKVMEAAREVRSRLKKAGFRVHIDDRDNRPGRKFYQWEIKGIPLRIEVGPNDIEKNIAVISRRDTGEKYQVSLDQ 372 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECcchhhCCeEEEEECCCCceEEEEHHH
Confidence 3 4678899999999999999999999 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 046808 639 FISRIKSATENR 650 (653)
Q Consensus 639 l~~~i~~~~~~~ 650 (653)
+.+.|.+++++.
T Consensus 373 l~~~l~~~l~~~ 384 (472)
T TIGR00408 373 LEERVVELLNNI 384 (472)
T ss_pred HHHHHHHHHHHH
Confidence 999998887764
No 15
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-55 Score=494.12 Aligned_cols=387 Identities=21% Similarity=0.334 Sum_probs=306.2
Q ss_pred hHHhhhchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccc
Q 046808 250 KEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYR 329 (653)
Q Consensus 250 ~eeakk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~ 329 (653)
..++...+|+.|.+. |++ +..++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|+++|||+.|.
T Consensus 15 p~~~~~~s~~ll~~a-g~i---~~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~ 90 (565)
T PRK09194 15 PADAEVISHQLLLRA-GYI---RKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYG 90 (565)
T ss_pred ccccchhhHHHHHhC-CCc---cccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccc
Confidence 345667789988888 875 3578999999999999999999999999999999999999999999999999999999
Q ss_pred cccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhH
Q 046808 330 ENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQI 409 (653)
Q Consensus 330 ~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~ 409 (653)
++||++.|+++++++||||+|+.++.++++++.||++||+|+||+++|||+|.++ ++||+|+|||+|.|+|+||.+++.
T Consensus 91 ~emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp-~~Gl~R~reF~q~d~~~f~~~~~~ 169 (565)
T PRK09194 91 PELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRP-RFGLMRGREFIMKDAYSFHADEES 169 (565)
T ss_pred hhceEEecCCCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCC-CCcccccccEEEeeEEEEcCChHH
Confidence 9999999999999999999999999999999999999999999999999999555 599999999999999999998765
Q ss_pred HH-HHHHHHHHHHHHHHHcCCCeEEEEecCCcc------------cccCCch-----------hHHHHH-----------
Q 046808 410 KD-EIRAVLDLTEEILLQFGFNKYEVNLSTKPE------------KAVGGDD-----------IWEKAT----------- 454 (653)
Q Consensus 410 ~d-~~~e~l~~~~~il~~lGl~~~~v~l~~~~~------------~~~g~~~-----------~~~~~~----------- 454 (653)
++ ++.++++++.++|++||| +|.+..++++. ...|.++ .-+.+.
T Consensus 170 a~~~~~~~~~~~~~i~~~lgl-~~~~~~~~~g~~gg~~s~e~~~~~~~g~~~~~~c~~c~~~~n~e~a~~~~~~~~~~~~ 248 (565)
T PRK09194 170 LDETYDAMYQAYSRIFDRLGL-DFRAVEADSGAIGGSASHEFMVLADSGEDTIVYSDESDYAANIEKAEALPPPRAAAEE 248 (565)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-ccEEEEcccccCCCceeEEEEEecCCCceEEEEeCCCCcchhhhhhcccCCCCccccc
Confidence 55 788999999999999999 56665444221 0011110 000000
Q ss_pred ----------HHHHHHHHhcCCc---------------e---------EEcC-------C---------------Cc---
Q 046808 455 ----------SALRDALDDKGWD---------------Y---------QIDE-------G---------------GG--- 475 (653)
Q Consensus 455 ----------~~l~~~l~~~g~~---------------~---------~~~~-------~---------------~~--- 475 (653)
....+.....|++ + ++|. + .+
T Consensus 249 ~~~~v~~p~~~t~~e~a~~lg~~~~~~~KtLi~~~~~~~~lvvvp~d~~vn~~kl~~~lg~~~l~~a~~eel~~~~g~~~ 328 (565)
T PRK09194 249 ALEKVDTPNAKTIEELAEFLNVPAEKTVKTLLVKADGELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIRAALGAVP 328 (565)
T ss_pred cceeecCCCCCcHHHHHHHhCCCHHHeeEEEEEEeCCeEEEEEeecchhhhHHHHHhhcCCcccccCCHHHHHHhhCCCC
Confidence 0000000000100 0 0000 0 00
Q ss_pred ccccc---e------eeE-----------------EEec-ccCCcc------------------cc-------cceE--E
Q 046808 476 AFYGP---K------IDL-----------------KIED-ALGRKW------------------QC-------STIQ--V 501 (653)
Q Consensus 476 ~~~g~---~------~d~-----------------~~~d-~~g~~~------------------~~-------~~i~--~ 501 (653)
.+.+| . +|. ++.. .+|++| .| ..|+ +
T Consensus 329 G~v~P~Gl~~~v~viiD~sl~~~~~~~~gan~~g~h~~~~~~~~d~~~~~~~d~~~~~~g~~c~~c~~~l~~~~~iEvGh 408 (565)
T PRK09194 329 GFLGPVGLPKDVPIIADRSVADMSNFVVGANEDDYHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIEVGH 408 (565)
T ss_pred CccCcccCCCCceEEEeccccccccccccCCCCCceeeCCccCcCCCcccccchhhhhcCCCCCCCCceeEEeeeEEEEE
Confidence 00001 0 010 0000 122222 12 1133 7
Q ss_pred EecCCc----ccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhc----CCCCCCCCCceEEEEecC---hhhHHH
Q 046808 502 DFNLPQ----RFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYA----GDFPLWLSPIQARVLPVT---DTQLEY 570 (653)
Q Consensus 502 d~~~~~----r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~----~~~P~~lap~~v~Vi~~~---~~~~~~ 570 (653)
.|++|. .|+++|.+++|+.+.++|||+|| |++|++++|+|+++ ..||.+++|+||+|+|++ ++..++
T Consensus 409 ~f~lG~~ys~~~~~~~~~~~g~~~~~~m~~~gI--Gv~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~~~~~~~ 486 (565)
T PRK09194 409 IFQLGTKYSEAMNATVLDENGKAQPLIMGCYGI--GVSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKDEEVKEL 486 (565)
T ss_pred EecCCcchhhccCCEEECCCCCEEeEEEeeEec--hHHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCcHHHHHH
Confidence 788875 46789999999999999999997 79999999999874 389999999999999997 678889
Q ss_pred HHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHH
Q 046808 571 CNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 644 (653)
Q Consensus 571 a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~ 644 (653)
|.+|++.||++|++|.+|+ +.++|+|+++|+++|||++|+||++|+++|+|+||+|++++|..|+++++++.|.
T Consensus 487 a~~i~~~L~~~gi~v~~Ddr~~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~ge~~~v~~~~l~~~i~ 561 (565)
T PRK09194 487 AEKLYAELQAAGIEVLLDDRKERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDELVEFLK 561 (565)
T ss_pred HHHHHHHHhccCCeEEEECCCCCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 9999999999999999999 8999999999999999999999999999999999999999999999999998876
No 16
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-55 Score=462.59 Aligned_cols=352 Identities=23% Similarity=0.339 Sum_probs=289.7
Q ss_pred ccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcc--cccccccceecccCCceEEeccCChH
Q 046808 274 AGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHL--DFYRENMYDQMNIEDELYQLRPMNCP 351 (653)
Q Consensus 274 ~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~--~~~~~~~y~~~d~~~~~l~LrP~~~~ 351 (653)
.++||+||+|.++..+++|++.+++++++|||.+|.||+||++++|.++.+. +.+.++||.|.|++|+.++|||+.|+
T Consensus 6 ~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Ta 85 (429)
T COG0124 6 RPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTA 85 (429)
T ss_pred CCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcH
Confidence 4799999999999999999999999999999999999999999999987443 44689999999999999999999888
Q ss_pred HHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCe
Q 046808 352 YHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNK 431 (653)
Q Consensus 352 ~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~ 431 (653)
++.+++..+... .++|+|+||+|+|||||+|| +| |+|||+|+|+++||.+++..| +|++.++.++|++|||.+
T Consensus 86 pv~R~~~en~~~-~~~p~k~yy~g~vfRyErPQ--~G--R~RqF~Q~g~E~iG~~~~~~D--AEvi~l~~~~l~~lGi~~ 158 (429)
T COG0124 86 PVARAVAENKLD-LPKPLKLYYFGPVFRYERPQ--KG--RYRQFYQFGVEVIGSDSPDAD--AEVIALAVEILEALGIGG 158 (429)
T ss_pred HHHHHHHhcccc-ccCCeeEEEecceecCCCCC--CC--CceeeEEcCeEEeCCCCcccC--HHHHHHHHHHHHHcCCCc
Confidence 888888766433 34899999999999999999 99 999999999999999999999 699999999999999999
Q ss_pred EEEEecCCcc-----cccCCch---------hHH------------------------------H-----H---------
Q 046808 432 YEVNLSTKPE-----KAVGGDD---------IWE------------------------------K-----A--------- 453 (653)
Q Consensus 432 ~~v~l~~~~~-----~~~g~~~---------~~~------------------------------~-----~--------- 453 (653)
+++++||+.. .++|.+. ..+ + +
T Consensus 159 ~~l~iN~~g~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~i~~~~~~ 238 (429)
T COG0124 159 FTLEINSRGILEGRLEYLGIDQREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPELLDYLDE 238 (429)
T ss_pred EEEEEcCcccHHHHHHhhcchhHHHHHHHHhhhhhHHHHHhhhhhhhhhhhchHHHHHhccchHHHHHhccHHhhhhccH
Confidence 9999999753 2222110 000 0 0
Q ss_pred -----HHHHHHHHHhcCCceEEcCC--Cc-ccc-cceeeEEEecccCCcccccceEEEecCCcccc-cEEECCCCCcccC
Q 046808 454 -----TSALRDALDDKGWDYQIDEG--GG-AFY-GPKIDLKIEDALGRKWQCSTIQVDFNLPQRFD-IVYVDSNSEKKRP 523 (653)
Q Consensus 454 -----~~~l~~~l~~~g~~~~~~~~--~~-~~~-g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d-~~~~~~~g~~~~p 523 (653)
...+.+.|+..|++|.+|++ +| +|| |..+++.. +..|. .++| ..||||| +. ...|+..+|
T Consensus 239 e~~~~~~~v~~~L~~~g~~~~id~~lvRGLDYYtg~VFE~~~-~~~~~---~~sI----~gGGRYD~Lv--~~~gG~~~p 308 (429)
T COG0124 239 ESLEHLEELLALLDALGISYEIDPSLVRGLDYYTGTVFEAVT-DGLGA---QGSV----CGGGRYDGLV--EEFGGKPTP 308 (429)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEccceecchhhccceEEEEEE-cCCcc---ccce----ecCccchHHH--HHhCCCCCC
Confidence 02244556677888888886 33 677 44444432 22221 1233 4579999 42 445678899
Q ss_pred EEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHH
Q 046808 524 IMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEK 602 (653)
Q Consensus 524 ~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~ 602 (653)
++|+ |+ |+||++.+|.+. +...+.-.+.+|+|+++++....+|.+++++||++|++|+++. .+++++|+++|++
T Consensus 309 avGF-ai--GveRl~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~~k~q~k~A~~ 383 (429)
T COG0124 309 AVGF-AI--GVERLILALEEE--GKEDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRKLKKQFKYADK 383 (429)
T ss_pred ceeE-eh--HHHHHHHHHHHc--CCCCCcCCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEeccccHHHHHHHHHH
Confidence 9996 76 799999998765 2212224577999999998888899999999999999999999 7889999999999
Q ss_pred cCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHH
Q 046808 603 QKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSAT 647 (653)
Q Consensus 603 ~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~ 647 (653)
.|+++++|+|++|+++|+|+|||+.|++|..++++++++.++..+
T Consensus 384 ~g~~~~viiGe~E~~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~~ 428 (429)
T COG0124 384 LGARFAVILGEDELANGVVTVKDLATGEQEEVPLDELVEELKELL 428 (429)
T ss_pred CCCCEEEEEcchHHhcCCEEEeeCCCCccceecHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999987654
No 17
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=3e-53 Score=472.62 Aligned_cols=390 Identities=21% Similarity=0.329 Sum_probs=305.5
Q ss_pred hhHHhhhchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccc
Q 046808 249 FKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFY 328 (653)
Q Consensus 249 ~~eeakk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~ 328 (653)
...++...+|+.|.+. |++ +..++|+|+|+|.|++++++|++++++++.++||++|.||.|++.++|+++|+|+.+
T Consensus 14 ~p~~~~~~s~~ll~ra-g~i---~~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~ 89 (568)
T TIGR00409 14 TPADAEVKSHQLLLRA-GFI---RRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTY 89 (568)
T ss_pred CCcccchhhHHHHHhC-CCc---cccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCcc
Confidence 3445667789988887 875 457899999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchh
Q 046808 329 RENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQ 408 (653)
Q Consensus 329 ~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~ 408 (653)
.++||++.|+.+++++||||+|+.++.++++++.||++||+|+||+++|||+|.++ ++||+|+|||+|.|+|+||.+++
T Consensus 90 ~~emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rp-r~Gl~R~REF~~~d~~~f~~~~~ 168 (568)
T TIGR00409 90 GPELLRLKDRKGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRP-RFGLMRGREFIMKDAYSFHSDEE 168 (568)
T ss_pred chhcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCC-CCCccccccEEEEEEEEEeCChH
Confidence 99999999999999999999999999999999999999999999999999999555 59999999999999999999876
Q ss_pred HHH-HHHHHHHHHHHHHHHcCCCeEEEEecCCcc-----------cccCCchh-----------HHHHH-----------
Q 046808 409 IKD-EIRAVLDLTEEILLQFGFNKYEVNLSTKPE-----------KAVGGDDI-----------WEKAT----------- 454 (653)
Q Consensus 409 ~~d-~~~e~l~~~~~il~~lGl~~~~v~l~~~~~-----------~~~g~~~~-----------~~~~~----------- 454 (653)
.++ ++..+++++.++|++|||+...+..+++.+ ...|.++. .+.+.
T Consensus 169 ~a~~e~~~~~~~y~~if~~LgL~~~~v~~~~g~~gg~~s~ef~~~~~~ge~~i~~c~~~~y~an~e~a~~~~~~~~~~~~ 248 (568)
T TIGR00409 169 SLDATYQKMYQAYSNIFSRLGLDFRPVQADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANIELAEALAPGERNAPT 248 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcceEEEeccccCCCccceEEeEecCCCceEEEEecCcccchhhhhhcccCcccccccc
Confidence 554 778888999999999999544443333211 01111100 00000
Q ss_pred -----------HHHHHHHHhcCCc---------eEEcC------------------------------------------
Q 046808 455 -----------SALRDALDDKGWD---------YQIDE------------------------------------------ 472 (653)
Q Consensus 455 -----------~~l~~~l~~~g~~---------~~~~~------------------------------------------ 472 (653)
..+.+.....+++ |..+.
T Consensus 249 ~~~~~~~tp~~~ti~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~~~~~~a~~~~~~~~ 328 (568)
T TIGR00409 249 AELDKVDTPNTKTIAELVECFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVAQVLELATEEEIFQK 328 (568)
T ss_pred ccceeecCCCCCcHHHHHHHhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccCcccccCCHHHHHHh
Confidence 0000011111100 00000
Q ss_pred -C-Ccccccce-----e---------------------eEEEec-ccCCccc------------------cc-------c
Q 046808 473 -G-GGAFYGPK-----I---------------------DLKIED-ALGRKWQ------------------CS-------T 498 (653)
Q Consensus 473 -~-~~~~~g~~-----~---------------------d~~~~d-~~g~~~~------------------~~-------~ 498 (653)
+ ...|.||. + +++... ++|++|. |+ .
T Consensus 329 ~g~~~g~~gpv~~~~~~~i~~D~~~~~~~~~~~gan~~~~h~~~~~~~rd~~~~~~~d~~~~~eGd~cp~c~~~l~~~rg 408 (568)
T TIGR00409 329 IASGPGSLGPVNINGGIPVLIDQTVALMSDFAAGANADDKHYFNVNWDRDVAIPEVADIRKVKEGDPSPDGQGTLKIARG 408 (568)
T ss_pred hCCCCCccCccccccCceEEechhhhcccccccccCCCCceeecccccccCCccccchhhhhhccCCCCCCCCcccccce
Confidence 0 00122220 0 001100 1222221 11 1
Q ss_pred eE--EEecCCcc----cccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhc----CCCCCCCCCceEEEEecC---h
Q 046808 499 IQ--VDFNLPQR----FDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYA----GDFPLWLSPIQARVLPVT---D 565 (653)
Q Consensus 499 i~--~d~~~~~r----~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~----~~~P~~lap~~v~Vi~~~---~ 565 (653)
|+ +.|++|.+ |+++|.+++|+.+.+.|||+|| |++|++++++|+++ ..||+++||+||+|+|+. +
T Consensus 409 IEvGhiF~LG~kYS~~~~~~~~d~~g~~~~~~mgcyGI--GvsRli~aiie~~~D~~Gl~wP~~iAP~qV~Iip~~~~~~ 486 (568)
T TIGR00409 409 IEVGHIFQLGTKYSEALKATFLDENGKNQFMTMGCYGI--GVSRLVSAIAEQHHDERGIIWPKAIAPYDVVIVVMNMKDE 486 (568)
T ss_pred EEEEEeccchhhhHHhcCCEEECCCCCEEEEEEeCCcc--hHHHHHHHHHHHhCccCCCcCChhhCCeEEEEEEcCCChH
Confidence 23 78888765 4789999999999999999997 79999999999885 389999999999999985 2
Q ss_pred hhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHH
Q 046808 566 TQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 644 (653)
Q Consensus 566 ~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~ 644 (653)
+..+.|.+|++.|+++|++|.+|+ +.++|+|+++|+.+|+|++|+||++++++|+|+|++|+++++..++++++++.|.
T Consensus 487 ~~~~~a~~l~~~L~~~gi~v~~DDr~~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~R~~~~~~~v~~~~l~~~i~ 566 (568)
T TIGR00409 487 EQQQLAEELYSELLAQGVDVLLDDRNERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNGEKQLIKKDELVECLE 566 (568)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEEcCCCceEEEEHHHHHHHHh
Confidence 577889999999999999999999 8899999999999999999999999999999999999999999999999988875
Q ss_pred H
Q 046808 645 S 645 (653)
Q Consensus 645 ~ 645 (653)
.
T Consensus 567 ~ 567 (568)
T TIGR00409 567 E 567 (568)
T ss_pred h
Confidence 4
No 18
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-53 Score=464.29 Aligned_cols=350 Identities=21% Similarity=0.366 Sum_probs=293.7
Q ss_pred hhhcccCccccc--ccc--cCcceecCccccHHHHHHHHHHHHHHHh--cCCeEEecCccCchhhhhhcCcccccccccc
Q 046808 260 RLGQDLDLFSIQ--DEA--GGGLVFWHPKGSIVRHIIEDFWKKSHIE--HDYDLLYTPHVAKADLWKISGHLDFYRENMY 333 (653)
Q Consensus 260 ~l~~~l~l~~~~--~~~--~~G~~~~lP~g~~l~~~I~~~~~~~~~~--~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y 333 (653)
.++++-+ |.|+ +.+ .+|+|||+|.|+.++++|+++|++.+.. .||.+|.||++.+.+||++||||+.|.+.||
T Consensus 9 ~~~~~~~-~~~~s~~iy~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~f~d~m~ 87 (456)
T PRK04173 9 SLAKRRG-FVFPSSEIYGGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDNFSDPLV 87 (456)
T ss_pred HHHHhcC-CeeeccccccchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccccCCcee
Confidence 3444444 4454 333 4699999999999999999999999987 8999999999999999999999999999999
Q ss_pred eecc--------c-------------------------------------------------------CCceEEeccCCh
Q 046808 334 DQMN--------I-------------------------------------------------------EDELYQLRPMNC 350 (653)
Q Consensus 334 ~~~d--------~-------------------------------------------------------~~~~l~LrP~~~ 350 (653)
.+.. . ++...+|||+|+
T Consensus 88 ~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpeta 167 (456)
T PRK04173 88 ECKKCKKRYRADHLIEELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETA 167 (456)
T ss_pred EeCCCCCEeechhhhHHHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccc
Confidence 8741 0 012467888888
Q ss_pred HHHHHHHHhhhcccC-CCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCC
Q 046808 351 PYHILVYQRKLQSYR-DFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGF 429 (653)
Q Consensus 351 ~~~~~~~~~~~~s~~-~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl 429 (653)
+++...|+++++||+ +||++++|+|+|||+|.++ +.||+|+|||+|.|+|+||+++++.+++..+++++.+++..||+
T Consensus 168 qg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~-~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~ 246 (456)
T PRK04173 168 QGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITP-RNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGI 246 (456)
T ss_pred hhHHHHHHHHHHhccccCCeeeeEEchhHhCccCC-CCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCC
Confidence 888888999999999 9999999999999999998 79999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCcc--cccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccc-c--ceEEEec
Q 046808 430 NKYEVNLSTKPE--KAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQC-S--TIQVDFN 504 (653)
Q Consensus 430 ~~~~v~l~~~~~--~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~-~--~i~~d~~ 504 (653)
+.+.+++++++. .+.|..+.|+.. ++... |+.|.+ + +...||.
T Consensus 247 ~~~~~~~s~~~~~e~~~ys~~~wd~e------~~~~~--------------------------g~~~~e~~g~~~~~dyd 294 (456)
T PRK04173 247 DPENLRFREHLPEELAHYSKATWDIE------YKFPF--------------------------GRFWGELEGIANRTDYD 294 (456)
T ss_pred CccceEEEecCcchhhccHHHHHhHH------HhCCC--------------------------CCcEEEEeeeeccchhh
Confidence 888888888742 456777778742 11111 222211 0 1124555
Q ss_pred CC-----cccccEEE--CCCCCcccCEEEEecccCchHHHHHHH-HHhhcC------------CCCCCCCCceEEEEecC
Q 046808 505 LP-----QRFDIVYV--DSNSEKKRPIMIHRAVLGSLERFFGVL-IEHYAG------------DFPLWLSPIQARVLPVT 564 (653)
Q Consensus 505 ~~-----~r~d~~~~--~~~g~~~~p~~g~~~i~GgieRli~~L-~e~~~~------------~~P~~lap~~v~Vi~~~ 564 (653)
++ .++|+.|. +.+|++..|+|+++|+ |++|++.++ .+++.+ .||+|++|+||+|+|++
T Consensus 295 L~~~~~~s~~dl~y~~~~~~~~~~~P~vi~~si--GieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~ 372 (456)
T PRK04173 295 LSRHSKHSGEDLSYFDDETTGEKYIPYVIEPSA--GLDRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVKVAVLPLV 372 (456)
T ss_pred cccchhhcCCCeEEEecCCCCceeeeEEEEecc--cHHHHHHHHHHHHcccccccCCcceeEEECCCcCCCCEEEEEEec
Confidence 54 47899998 5677888999999995 599965555 555555 69999999999999998
Q ss_pred h--hhHHHHHHHHHHHHhCCCeEEEeCCCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHH
Q 046808 565 D--TQLEYCNEVIKKLKTNGIRAEICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISR 642 (653)
Q Consensus 565 ~--~~~~~a~~la~~Lr~~Gi~v~~d~~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~ 642 (653)
+ +..++|.++++.||++ ++|++|+..++++|+++|++.|+|++||||++|+++|+|+||+|++++|..++++++++.
T Consensus 373 ~~~e~~~~A~~la~~LR~~-irVelD~~~slgkkir~A~~~Gip~~IIIG~~El~~g~VtvR~r~t~eq~~v~l~el~~~ 451 (456)
T PRK04173 373 KKEKLSEKAREIYAELRKD-FNVDYDDSGSIGKRYRRQDEIGTPFCITVDFDTLEDNTVTIRDRDTMEQVRVKIDELKDY 451 (456)
T ss_pred CcHHHHHHHHHHHHHHHhc-CEEEEeCCCCHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEEeHHHHHHH
Confidence 7 4788999999999999 999999866999999999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 046808 643 IKSA 646 (653)
Q Consensus 643 i~~~ 646 (653)
++++
T Consensus 452 l~~~ 455 (456)
T PRK04173 452 LAEK 455 (456)
T ss_pred HHhh
Confidence 8764
No 19
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=4e-51 Score=445.65 Aligned_cols=353 Identities=18% Similarity=0.212 Sum_probs=293.8
Q ss_pred ccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhc-C-cccccccccceecccCCceEEeccCChH
Q 046808 274 AGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKIS-G-HLDFYRENMYDQMNIEDELYQLRPMNCP 351 (653)
Q Consensus 274 ~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~s-g-~~~~~~~~~y~~~d~~~~~l~LrP~~~~ 351 (653)
.++|++||+|.++..++.|++.+++++.+|||++|.||+||+.++|.++ | +++.+.++||+|.|.+|+.++|||+.|+
T Consensus 6 ~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~T~ 85 (430)
T CHL00201 6 AIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEGTA 85 (430)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCCcH
Confidence 5799999999999999999999999999999999999999999999987 4 6777789999999999999999999999
Q ss_pred HHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCe
Q 046808 352 YHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNK 431 (653)
Q Consensus 352 ~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~ 431 (653)
++++++..+..++.++|+|+||+|+|||+|+|| +| |+|||+|+|+|+||.+++.+| +|++.++.++|+.||+++
T Consensus 86 ~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q--~G--R~Ref~Q~g~EiiG~~~~~aD--~Evi~l~~~~l~~lGl~~ 159 (430)
T CHL00201 86 GIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQ--SG--RQRQFHQLGIEFIGSIDARAD--TEVIHLAMQIFNELQVKN 159 (430)
T ss_pred HHHHHHHHccccccCCCeEEEEEcceecCCCCc--CC--ccceeEEeceEEECCCChhhH--HHHHHHHHHHHHHcCCCc
Confidence 999987665556678999999999999999999 89 999999999999999999999 699999999999999999
Q ss_pred EEEEecCCccc----------------c---cCC---------c------------hhHHH-----------HH---HHH
Q 046808 432 YEVNLSTKPEK----------------A---VGG---------D------------DIWEK-----------AT---SAL 457 (653)
Q Consensus 432 ~~v~l~~~~~~----------------~---~g~---------~------------~~~~~-----------~~---~~l 457 (653)
+.+.+++.... . +.. + +.+.. +. ..+
T Consensus 160 ~~i~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l~~~~~~~~~~~l~~~ 239 (430)
T CHL00201 160 LILDINSIGKLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSLESTEHFYDV 239 (430)
T ss_pred eEEEECCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHHHhhhhHHHHHHHHHH
Confidence 99999984420 0 000 0 00100 01 122
Q ss_pred HHHHHhcCCceEEcCC---Cccccc-ceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecccCc
Q 046808 458 RDALDDKGWDYQIDEG---GGAFYG-PKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGS 533 (653)
Q Consensus 458 ~~~l~~~g~~~~~~~~---~~~~~g-~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~Gg 533 (653)
.+.|+..|+++.+|.+ ..+||+ +++++...+..+..+. ..|||||- +.+..|+...|++|+ ++ |
T Consensus 240 ~~~l~~~g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i--------~gGGRYD~-L~~~fg~~~~PavGf-a~--g 307 (430)
T CHL00201 240 CTYLNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTI--------CGGGRYDS-LIHQLGGPKTPAVGC-AI--G 307 (430)
T ss_pred HHHHHHcCCcEEECcccccCCccccccEEEEEECCCCCccee--------eeccchHH-HHHHhCCCCCCeeEE-Ee--c
Confidence 3445667888888886 347885 5777765443333333 33699993 445566678899996 55 7
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEEC
Q 046808 534 LERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVG 612 (653)
Q Consensus 534 ieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG 612 (653)
+||++.+|.+. ...| ..|.+|+|++++++...+|.+++++||++|++|++|. ..++++++++|++.|+|+++|+|
T Consensus 308 ~erl~~~l~~~--~~~~--~~~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~~~~l~k~~k~A~~~~~~~viiiG 383 (430)
T CHL00201 308 LERLLLIAKDN--IILP--KQSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLSSSNFHKQIKQAGKKRAKACIILG 383 (430)
T ss_pred HHHHHHHHhcc--ccCC--CCCCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 99999987653 2223 3567899999998889999999999999999999999 88999999999999999999999
Q ss_pred cccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHh
Q 046808 613 AKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATE 648 (653)
Q Consensus 613 ~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~ 648 (653)
++|+++|+|+||++.+++|.+++++++++.+.++..
T Consensus 384 ~~E~~~~~vtvk~l~~~~q~~i~~~~~~~~~~~~~~ 419 (430)
T CHL00201 384 DNEIMDNCITIKWLDEQVQENAQYSNFKQEISYLKK 419 (430)
T ss_pred chHHhCCcEEEEECCCCCcEEEcHHHHHHHHHHHHH
Confidence 999999999999999999999999999988776544
No 20
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=2.6e-46 Score=413.18 Aligned_cols=345 Identities=19% Similarity=0.277 Sum_probs=273.7
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHH
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPY 352 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~ 352 (653)
..++|++||+|.++.+++.|++.+++++++|||++|.||+||+.++|.++.+.+ ..++||+|.|++|+.++|||+.|++
T Consensus 71 ~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~-~~~~~y~f~D~~g~~l~LRpD~T~~ 149 (487)
T PLN02530 71 NPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEE-ITDQLYNFEDKGGRRVALRPELTPS 149 (487)
T ss_pred CCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcc-cccceEEEECCCCCEEecCCCCcHH
Confidence 357999999999999999999999999999999999999999999999875544 4789999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC--
Q 046808 353 HILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN-- 430 (653)
Q Consensus 353 ~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~-- 430 (653)
+++++..+..+ .++|+|+||+|+|||+|+++ +| |+|||+|+|+|+||.+++.+| +|++.++.++|+.||++
T Consensus 150 iaR~~~~~~~~-~~~P~r~~y~g~vfR~e~~q--~g--r~REf~Q~giEiiG~~~~~aD--aEvi~l~~~~l~~lgl~~~ 222 (487)
T PLN02530 150 LARLVLQKGKS-LSLPLKWFAIGQCWRYERMT--RG--RRREHYQWNMDIIGVPGVEAE--AELLAAIVTFFKRVGITSS 222 (487)
T ss_pred HHHHHHhcccc-cCCCeEEEEEcCEEcCcCCC--CC--CccceEEcCeeEeCCCCcchh--HHHHHHHHHHHHHcCCCCC
Confidence 99988876543 36899999999999999998 89 999999999999999999888 59999999999999997
Q ss_pred eEEEEecCCcc-----cccCCch-hH----------HH------------------------------------------
Q 046808 431 KYEVNLSTKPE-----KAVGGDD-IW----------EK------------------------------------------ 452 (653)
Q Consensus 431 ~~~v~l~~~~~-----~~~g~~~-~~----------~~------------------------------------------ 452 (653)
++.+.+|++.+ ..++.++ .+ ++
T Consensus 223 ~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~~~~~~~~l~~l~~~~~~~~l~~~~~~~ 302 (487)
T PLN02530 223 DVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVSEEAIEGILDVLSLKSLDDLEALLGAD 302 (487)
T ss_pred ceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCCCHHHHHHHHHHHhccCHHHHHHHhhhh
Confidence 69999999743 1122110 00 00
Q ss_pred --HH---HHHHHHHHhcCCc--eEEcCC--Cc-ccccceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCccc
Q 046808 453 --AT---SALRDALDDKGWD--YQIDEG--GG-AFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKR 522 (653)
Q Consensus 453 --~~---~~l~~~l~~~g~~--~~~~~~--~~-~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~ 522 (653)
+. +.+.+.|+..|++ +.+|++ .+ +||+. +.|+..+..|.. ++| ..|||||-. ....|+...
T Consensus 303 ~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTG-ivFe~~~~~~~~---~~I----~gGGRYD~L-i~~fgg~~~ 373 (487)
T PLN02530 303 SEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTG-IVFEGFDRAGKL---RAI----CGGGRYDRL-LSTFGGEDT 373 (487)
T ss_pred HHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCc-eEEEEEecCCCc---cee----eecccHHHH-HHHhCCCCC
Confidence 00 0011122334443 444543 12 45531 222222211211 112 457899921 133455678
Q ss_pred CEEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHH
Q 046808 523 PIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAE 601 (653)
Q Consensus 523 p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~ 601 (653)
|++|+ |+ |++|++.++.+. +.+|.|.+|.+|+|++++++...+|.+++++||++|++|++|. +.++++++++|+
T Consensus 374 pAvGF-a~--g~~~l~~~l~~~--g~~p~~~~~~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~~~~l~k~ik~A~ 448 (487)
T PLN02530 374 PACGF-GF--GDAVIVELLKEK--GLLPELPHQVDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLEPKKLKWVFKHAE 448 (487)
T ss_pred CeeEE-EE--hHHHHHHHHHhc--CCCCCCCCCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHH
Confidence 99997 65 599988776543 5688888999999999999889999999999999999999999 889999999999
Q ss_pred HcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHH
Q 046808 602 KQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDF 639 (653)
Q Consensus 602 ~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el 639 (653)
+.|+|++++||++|.++|+|+||++.+++|..++++++
T Consensus 449 k~g~~~iviiG~~E~~~~~V~vK~l~sgeq~~v~~~el 486 (487)
T PLN02530 449 RIGAKRLVLVGASEWERGMVRVKDLSSGEQTEVKLDEL 486 (487)
T ss_pred HCCCCEEEEEchhHHhCCeEEEEECCCCcceEechHHc
Confidence 99999999999999999999999999999999998775
No 21
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-45 Score=365.64 Aligned_cols=369 Identities=20% Similarity=0.284 Sum_probs=284.0
Q ss_pred chhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccccccccee
Q 046808 256 RDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQ 335 (653)
Q Consensus 256 ~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~ 335 (653)
....+|+.++|++ ..+.+|+|-|+|.|.+..+++.+.+...|...|.+.|.+|++.+.++|+++|+|+....+||++
T Consensus 25 ~~aq~LL~e~GfI---~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl 101 (457)
T KOG2324|consen 25 ETAQELLQEVGFI---RPSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRL 101 (457)
T ss_pred hHHHHHHHHhCcc---ccCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEe
Confidence 3455677888875 3578999999999999999999999999999999999999999999999999999989999999
Q ss_pred cccCCceEEeccCChHHHHHHHHhhhc-ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchh-HHHHH
Q 046808 336 MNIEDELYQLRPMNCPYHILVYQRKLQ-SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQ-IKDEI 413 (653)
Q Consensus 336 ~d~~~~~l~LrP~~~~~~~~~~~~~~~-s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~-~~d~~ 413 (653)
.|+.|+.+||.||++..++.+.+.... ||++||+++||+|++||+|.++ |.||+|.|||+|.|+|.|.++++ +.+.|
T Consensus 102 ~Dr~gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrp-RfGLlRgREFlMKDmYsFd~~~etA~qTy 180 (457)
T KOG2324|consen 102 HDRKGKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRP-RFGLLRGREFLMKDMYSFDSDEETAQQTY 180 (457)
T ss_pred eccCCCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCc-cccchhhHHHHHhhhhcccCCHHHHHHHH
Confidence 999999999999999999998887765 9999999999999999999999 79999999999999999988855 77789
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEecCCcc-----------cccCCchhHHHHHHHHHHHHHhcCCceEEcCCCccccccee
Q 046808 414 RAVLDLTEEILLQFGFNKYEVNLSTKPE-----------KAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKI 482 (653)
Q Consensus 414 ~e~l~~~~~il~~lGl~~~~v~l~~~~~-----------~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~ 482 (653)
..+.+.|..+|++||+|-+.|...++.+ ..+|.+. ...+..+|. ..|.. .+-.+++
T Consensus 181 ~~v~~aY~~iFkqL~~pfVkv~AdsG~iGG~vShEfhl~~~vgED~---------l~~C~~C~~--s~n~e--~~~~sk~ 247 (457)
T KOG2324|consen 181 QLVDQAYDRIFKQLGLPFVKVWADSGDIGGEVSHEFHLIHPVGEDT---------LMSCPSCGY--SKNSE--DLDLSKI 247 (457)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeecccccCceeeeeEeccCccCccc---------eeecCcCCc--cCchh--hhcCCcc
Confidence 9999999999999999877777666432 1112110 001112221 11100 0000100
Q ss_pred eEEEecc-cCCcccccce--EEEecCCcc----cccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhc----CCCCC
Q 046808 483 DLKIEDA-LGRKWQCSTI--QVDFNLPQR----FDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYA----GDFPL 551 (653)
Q Consensus 483 d~~~~d~-~g~~~~~~~i--~~d~~~~~r----~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~----~~~P~ 551 (653)
. ..... -|+.-....| -+.|.+|.. ||.+|.+..|+....+|||+|| |++|+++|.+|... .+||.
T Consensus 248 ~-~Cp~C~~~~L~~~~~IEVgHtF~LG~kYS~~lna~f~~~~gKpe~l~MgCyGI--GVtRllaAa~evls~~~~lrwP~ 324 (457)
T KOG2324|consen 248 A-SCPKCNEGRLTKTKSIEVGHTFLLGTKYSKPLNAKFVNVEGKPEFLHMGCYGI--GVTRLLAAAAEVLSDDKGLRWPS 324 (457)
T ss_pred c-cCCcccCCCcccccceEEEEEEEeccccccccCceeeeecCCcceEEecceec--cHHHHHHHHHHHhcccccccccc
Confidence 0 00000 0011111112 267777655 4568888889988999999997 79999999998643 48999
Q ss_pred CCCCceEEEE-ecChhhHHHHHHHHHHHHhC------CCeEEEeC--CCCHHHHHHHHHHcCCCEEEEEC-cccccCCeE
Q 046808 552 WLSPIQARVL-PVTDTQLEYCNEVIKKLKTN------GIRAEICH--GERLPKLIRNAEKQKIPLMAVVG-AKEVDAQTV 621 (653)
Q Consensus 552 ~lap~~v~Vi-~~~~~~~~~a~~la~~Lr~~------Gi~v~~d~--~~~~~kk~~~A~~~gip~~iiiG-~~e~~~~~V 621 (653)
.+||++|.++ |-.....+.+.+++.+|-.. --.+.+|+ ..++|+++++|++.|+|++|||| .....+..+
T Consensus 325 ~iAPy~vcli~pk~~~~~q~~~ev~~el~~~~~~~~l~~~iLlddr~~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~~~ 404 (457)
T KOG2324|consen 325 LIAPYKVCLIGPKKGSKSQRAQEVISELLNDEAVGNLHGEILLDDREELTIGKRIKDANRLGIPFVIVVGNSASWDNPEI 404 (457)
T ss_pred ccCcceeEEeccCCcchhhhHHHHHHHhhcchhhhhhccceeccchhhhhhHHhhhhHHhcCCCEEEEEcccccCCCceE
Confidence 9999999544 44455555677777766432 22566777 58899999999999999999999 666778899
Q ss_pred EEEECCCCceeeeeHHHHHHHHH
Q 046808 622 TVRSRFGGELGTMKVDDFISRIK 644 (653)
Q Consensus 622 ~vk~~~~~~q~~v~~~el~~~i~ 644 (653)
+|+....|+......+.+.+.+.
T Consensus 405 EV~~~~~ge~~~l~~~~~~~l~~ 427 (457)
T KOG2324|consen 405 EVRTIRWGESAELDKDGFMKLLS 427 (457)
T ss_pred EEEEeecCceeccchhhHHHHhh
Confidence 99999999988887777765544
No 22
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.7e-43 Score=384.88 Aligned_cols=346 Identities=24% Similarity=0.360 Sum_probs=280.4
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhc-Ccc-cccccccceecccCCceEEeccCCh
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKIS-GHL-DFYRENMYDQMNIEDELYQLRPMNC 350 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~s-g~~-~~~~~~~y~~~d~~~~~l~LrP~~~ 350 (653)
..++|++||+|.++.+++.|++.+++++.++||++|.||.|++.++|..+ |++ +.+.++||+|.|.+|+.++|||+.|
T Consensus 5 ~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T 84 (412)
T PRK00037 5 QAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGT 84 (412)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCc
Confidence 35799999999999999999999999999999999999999999999876 444 2346899999999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 351 PYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 351 ~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
++++++++.+. .+|+|+||+|+|||+|.++ .| |.|||+|+|+|+||.+++.+| +|++.++.++|+.||++
T Consensus 85 ~~~ar~~~~~~----~~p~r~~~~g~vfR~e~~~--~g--r~ref~Q~g~ei~g~~~~~~d--~E~i~~~~~~l~~lg~~ 154 (412)
T PRK00037 85 APVVRAVIEHK----LQPFKLYYIGPMFRYERPQ--KG--RYRQFHQFGVEVIGSDSPLAD--AEVIALAADILKALGLK 154 (412)
T ss_pred HHHHHHHHhCC----CCCeEEEEEcCccccCCCC--CC--cccceEEcCeeeeCCCCcchh--HHHHHHHHHHHHHcCCC
Confidence 98888887642 2899999999999999988 78 999999999999999988777 59999999999999998
Q ss_pred eEEEEecCCcc------------ccc--CCc--------------------------hhHHH--------------HHHH
Q 046808 431 KYEVNLSTKPE------------KAV--GGD--------------------------DIWEK--------------ATSA 456 (653)
Q Consensus 431 ~~~v~l~~~~~------------~~~--g~~--------------------------~~~~~--------------~~~~ 456 (653)
++.+.+++... ..+ +.+ +.+.. ..+.
T Consensus 155 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (412)
T PRK00037 155 GLKLLINSLGDFEIRANYRKALVGFLEKGLDELDEDSKRRLETNPLRILDKKDKEDQELLKDAPKLLDYLDEESKEHFEE 234 (412)
T ss_pred ceeeeeccCCCHHHhHHHHHHHHHHHHhCchhhchHHHHHHhhCchhhhcccchhhHHHHhcchHHHHHhhHHHHHHHHH
Confidence 88886554321 000 111 11110 1123
Q ss_pred HHHHHHhcCCceEEcCCC---cccc-cceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecccC
Q 046808 457 LRDALDDKGWDYQIDEGG---GAFY-GPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLG 532 (653)
Q Consensus 457 l~~~l~~~g~~~~~~~~~---~~~~-g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~G 532 (653)
+.+.|+..|+.+.++++. -+|| |+.++... +..|.. ++| ..|||||-. ....|+...|++|+ ++
T Consensus 235 l~~~l~~~~~~i~~Dl~~~r~l~YYtG~vFe~~~-~~~g~~---~~i----~~GGRYD~L-~~~f~~~~~pavGf-s~-- 302 (412)
T PRK00037 235 LKELLDALGIPYVIDPRLVRGLDYYTGTVFEFVT-DDLGAQ---GTV----CGGGRYDGL-VEQFGGPPTPAVGF-AI-- 302 (412)
T ss_pred HHHHHHHcCCCEEECCCcccChhhccceEEEEEE-CCCCcc---cee----eeccchhHH-HHHhCCCCCceEEE-EE--
Confidence 445566678777888763 2677 67766543 333432 122 457999932 22334457899986 54
Q ss_pred chHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEE
Q 046808 533 SLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVV 611 (653)
Q Consensus 533 gieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iii 611 (653)
|++|++.+|.++.. +|.+|+|+|++++...+|.++++.||++|++|++|. +.++++++++|++.|+|++++|
T Consensus 303 ~le~l~~~l~~~~~-------~~~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i~~~~~~~~~~~~~a~~~gi~~~vii 375 (412)
T PRK00037 303 GVERLLLLLEELGE-------EPVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDYGGRKLKKQFKYADKSGARFVLIL 375 (412)
T ss_pred cHHHHHHHHHhcCC-------CCCCEEEEEeChHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 79999998887621 688999999988788889999999999999999998 7899999999999999999999
Q ss_pred CcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHH
Q 046808 612 GAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSAT 647 (653)
Q Consensus 612 G~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~ 647 (653)
|++|.++|+|+||+++++++..++++++++.|++..
T Consensus 376 g~~e~~~~~v~vr~~~~~~~~~v~~~el~~~i~~~~ 411 (412)
T PRK00037 376 GEDELANGTVTVKDLRTGEQQTVPLDELVEALKELL 411 (412)
T ss_pred ChhHHhCCeEEEEECCCCceEEeeHHHHHHHHHHhh
Confidence 999999999999999999999999999999998764
No 23
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=3.8e-43 Score=392.26 Aligned_cols=349 Identities=20% Similarity=0.223 Sum_probs=267.5
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHH
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPY 352 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~ 352 (653)
..++|++||+|..+.++++|++.++++|++|||.+|.||+||+.++|..+.+.+ .++||+|.|++|+.++|||+.|++
T Consensus 328 k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged--~k~mY~f~D~gGr~LaLRPDlTvP 405 (763)
T PLN02972 328 KIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGED--SKLIYDLADQGGELCSLRYDLTVP 405 (763)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcc--hhheEEEECCCCCEEEeCCCChHH
Confidence 578999999999999999999999999999999999999999999998765544 368999999999999999998888
Q ss_pred HHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchh-HHHHHHHHHHHHHHHHHHcCCCe
Q 046808 353 HILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQ-IKDEIRAVLDLTEEILLQFGFNK 431 (653)
Q Consensus 353 ~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~-~~d~~~e~l~~~~~il~~lGl~~ 431 (653)
+.+++..+. ..|+|+||+|+|||+|+|+ +| |+|||+|+|+|+||..++ ..| +|++.++.++|+.||+++
T Consensus 406 iAR~vA~n~----~~p~KrYyiG~VFR~e~pq--kG--R~REF~Q~G~EIIG~~~~~~aD--AEVI~La~E~L~~LGi~d 475 (763)
T PLN02972 406 FARYVAMNG----ITSFKRYQIAKVYRRDNPS--KG--RYREFYQCDFDIAGVYEPMGPD--FEIIKVLTELLDELDIGT 475 (763)
T ss_pred HHHHHHhCC----CCcceEEEeccEEecCCCC--CC--CCccceEEeEEEEcCCCcchhh--HHHHHHHHHHHHhCCCCc
Confidence 888877642 2489999999999999998 89 999999999999998554 567 699999999999999999
Q ss_pred EEEEecCCcc-----cccCCch-hHHHHH---------------HH--------------HH------------------
Q 046808 432 YEVNLSTKPE-----KAVGGDD-IWEKAT---------------SA--------------LR------------------ 458 (653)
Q Consensus 432 ~~v~l~~~~~-----~~~g~~~-~~~~~~---------------~~--------------l~------------------ 458 (653)
+.|++||+.+ ..+|.++ .+.... +. +.
T Consensus 476 f~I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~evLd~L~~ 555 (763)
T PLN02972 476 YEVKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLELLSKLRQ 555 (763)
T ss_pred eEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999763 2233221 111000 00 00
Q ss_pred ----------------------HHHHhcCC--ceEEcCCC--c-ccc-cceeeEEEecccCCcccccceEEEecCCcccc
Q 046808 459 ----------------------DALDDKGW--DYQIDEGG--G-AFY-GPKIDLKIEDALGRKWQCSTIQVDFNLPQRFD 510 (653)
Q Consensus 459 ----------------------~~l~~~g~--~~~~~~~~--~-~~~-g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d 510 (653)
+.|+..|+ .+.+|.+. + +|| |..|+....+ .+ .++| ..|||||
T Consensus 556 ~~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~~~~g-~~----~gsI----agGGRYD 626 (763)
T PLN02972 556 EGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVFKG-AQ----VGSI----AAGGRYD 626 (763)
T ss_pred hhHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEEEEcC-Cc----ccee----eecCCch
Confidence 00111121 12222221 1 233 2222221110 00 0111 3578998
Q ss_pred cEEECCCCCcccCEEEEecccCchHHHHHHHHHhhcCCCCC---CCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEE
Q 046808 511 IVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPL---WLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI 587 (653)
Q Consensus 511 ~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~~~P~---~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~ 587 (653)
-. ....|+...|++|+ ++ |+||++.+|.+.. ..+. ...+.+|+|++.+++....+.++++.||++||++++
T Consensus 627 ~L-v~~FgG~~vPAVGF-Si--GIERL~~~L~~~~--~~~~~~~~~~~~dVlV~s~g~~~l~~alkia~~LR~aGI~aE~ 700 (763)
T PLN02972 627 NL-VGMFSGKQVPAVGV-SL--GIERVFAIMEQQE--EEKSQVIRPTETEVLVSIIGDDKLALAAELVSELWNAGIKAEY 700 (763)
T ss_pred hH-HHhcCCCCCCEEEE-Ee--cHHHHHHHHHHcc--cCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 31 13344568899997 65 6999998886542 1111 124468999999888888999999999999999998
Q ss_pred eCCCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHh
Q 046808 588 CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATE 648 (653)
Q Consensus 588 d~~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~ 648 (653)
+...++++++++|++.|+|+++|+|++|+++|+|+||++.+++|..++++++++.|++.+.
T Consensus 701 ~~~~kl~kq~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tgeq~~V~~delv~~l~~~l~ 761 (763)
T PLN02972 701 KVSTRKAKHLKRAKESGIPWMVLVGEKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAELL 761 (763)
T ss_pred eCCCCHHHHHHHHHHCCCCEEEEECchHHhCCeEEEEECCCCcceEeeHHHHHHHHHHHhc
Confidence 6677899999999999999999999999999999999999999999999999999988775
No 24
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-43 Score=382.22 Aligned_cols=382 Identities=22% Similarity=0.374 Sum_probs=296.7
Q ss_pred hhHHhhhchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccc
Q 046808 249 FKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFY 328 (653)
Q Consensus 249 ~~eeakk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~ 328 (653)
..+++..-.|..|.++ |+++ ...+|+|.|+|.|.+++++|++++++.+.+.|.+++.+|+|.+.++|+.||||+.|
T Consensus 14 ~p~da~~~sh~ll~rA-g~i~---~~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f 89 (500)
T COG0442 14 KPADASEWSHQLLLRA-GMIR---KPVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGF 89 (500)
T ss_pred CcchhHHHHHHHHHhc-Ccee---cccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhc
Confidence 4466777788877777 8754 37899999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchh
Q 046808 329 RENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQ 408 (653)
Q Consensus 329 ~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~ 408 (653)
.++||+++|+++++++||||+|..++.+++++++||++||+++|||+++||+|.++ ++||+|.|||+|.|+|+|+.+..
T Consensus 90 ~~El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rp-r~gllR~REF~mkdaySfh~~~e 168 (500)
T COG0442 90 GPELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRP-RFGLLRGREFLMKDAYSFHADEE 168 (500)
T ss_pred chhhEEEEccCCceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccC-CCCccchheeeecccccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999998 79999999999999999988754
Q ss_pred -HHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHH-----------------HHHHHHHHHHHhcCCceEE
Q 046808 409 -IKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWE-----------------KATSALRDALDDKGWDYQI 470 (653)
Q Consensus 409 -~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~-----------------~~~~~l~~~l~~~g~~~~~ 470 (653)
+...+.+++++|.++|.++|+. +.....+. +++|...++. ..-+.+..+. . .+++.-
T Consensus 169 ~a~~~y~~~~~~Y~~if~~i~l~-~~~~~ad~--g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~-~-~~~~~~ 243 (500)
T COG0442 169 DAEETYEKMLDAYSRIFLRLPLI-FGPVPADE--GFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAF-I-DIKFED 243 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhCCce-EEeecccC--CCCCCccceEEEEEccCCCccEEEEecchHHhHHHhc-c-CCCccc
Confidence 6677899999999999999984 33322221 1222211000 0001111111 0 111110
Q ss_pred cC--------------------------CC-ccccccee--eEEE-----------------------------------
Q 046808 471 DE--------------------------GG-GAFYGPKI--DLKI----------------------------------- 486 (653)
Q Consensus 471 ~~--------------------------~~-~~~~g~~~--d~~~----------------------------------- 486 (653)
.+ |+ .-+.+|+. +.++
T Consensus 244 ~~~~~~~~v~t~s~~~s~r~~~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~ 323 (500)
T COG0442 244 EEEGELEYVHTTSYGISTRIIGAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVE 323 (500)
T ss_pred cccccceEecccceEEEeeeeeEEEEEecCCCCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEe
Confidence 00 00 00112210 0000
Q ss_pred ec-----ccCCc---ccccceEEEecCCcccc----cEEECCCCCcccCEEEEecccCchHHHHHHHHHhhcC----CCC
Q 046808 487 ED-----ALGRK---WQCSTIQVDFNLPQRFD----IVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAG----DFP 550 (653)
Q Consensus 487 ~d-----~~g~~---~~~~~i~~d~~~~~r~d----~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~----~~P 550 (653)
.| .-|.. |..--|-+.|.+|.||- .++.+.+|+.++..|||+|+ |++|++++++|++++ .||
T Consensus 324 ~D~~~~~~~G~kl~~~e~ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygi--gvsr~v~a~ieq~~d~~gi~w~ 401 (500)
T COG0442 324 GDDRSPDGPGFKLNIWEGIEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGI--GVSRLVAALLEQIHDENGIIWP 401 (500)
T ss_pred ccccCCCCCCceeeeeeccccCEEEEECchhhhhCeeEEEecCCCccceEEEehhh--hhhhHHHHHHHHhcccccCccc
Confidence 01 01110 11111226777776664 46889999998899999997 799999999998763 799
Q ss_pred CCCCCceEEEEecCh---hhHHHHHHHHHHHHhCC-CeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEE
Q 046808 551 LWLSPIQARVLPVTD---TQLEYCNEVIKKLKTNG-IRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRS 625 (653)
Q Consensus 551 ~~lap~~v~Vi~~~~---~~~~~a~~la~~Lr~~G-i~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~ 625 (653)
...+|+++.|++++. +....+.+++..|...| ..|.+|+ +++.|.++.+|+.+|+|+.+++|++ .++|.|++|+
T Consensus 402 ~a~apf~~~iv~~n~~~~~~~~~~~~~~~~l~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~-~~~g~~e~k~ 480 (500)
T COG0442 402 KAIAPFDVHIVPVNTKDFKQAEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKR-LAEGEVEVKC 480 (500)
T ss_pred cccCcceeEEEEcCchhHHHHHHhhhHHHHHHhCCchhhhhhhhccccCccccCCeEecccceeeeccc-ccCCceeEEe
Confidence 899999999999874 34455677888999999 9999999 9999999999999999999999988 7889999999
Q ss_pred CCCCceeeeeHHHHHHHH
Q 046808 626 RFGGELGTMKVDDFISRI 643 (653)
Q Consensus 626 ~~~~~q~~v~~~el~~~i 643 (653)
+.+|+...++..++++.+
T Consensus 481 r~~ge~~~~~~~~l~~~~ 498 (500)
T COG0442 481 RKCGEKEAVTIEALFARL 498 (500)
T ss_pred cCCCchhhccHHHHHHHh
Confidence 999999999888887664
No 25
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.2e-43 Score=371.24 Aligned_cols=367 Identities=20% Similarity=0.321 Sum_probs=273.6
Q ss_pred hhcccCccccc--cccc--CcceecCccccHHHHHHHHHHHHHHH--hcCCeEEecCccCchhhhhhcCcccccccccce
Q 046808 261 LGQDLDLFSIQ--DEAG--GGLVFWHPKGSIVRHIIEDFWKKSHI--EHDYDLLYTPHVAKADLWKISGHLDFYRENMYD 334 (653)
Q Consensus 261 l~~~l~l~~~~--~~~~--~G~~~~lP~g~~l~~~I~~~~~~~~~--~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~ 334 (653)
|+++-| |.|+ +.+| +|+|||.|.|+.++++|++.|++.+. +-+..+|++|+|.+..||++|||.+.|.+-|-.
T Consensus 12 l~krrg-f~~~s~eiYgg~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV~ 90 (539)
T PRK14894 12 LAKRRG-FIFPSSEIYGGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLVD 90 (539)
T ss_pred HHHhCC-CCccCccccCCcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCceeE
Confidence 334434 4454 4454 59999999999999999999999993 567889999999999999999999998654432
Q ss_pred ecc--------------------------------------cCC--ceEEeccCChHHHHHHHHhhhcccC-CCCcEEEE
Q 046808 335 QMN--------------------------------------IED--ELYQLRPMNCPYHILVYQRKLQSYR-DFPIRVAE 373 (653)
Q Consensus 335 ~~d--------------------------------------~~~--~~l~LrP~~~~~~~~~~~~~~~s~~-~lP~rl~~ 373 (653)
++. .++ ...+|||+|+++++..|++.+...+ .||+-++|
T Consensus 91 CkkCk~ryRaD~LiikCP~CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQ 170 (539)
T PRK14894 91 CRDCKMRWRADHIQGVCPNCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQ 170 (539)
T ss_pred CCCCCccccCccceeeCCCCCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEe
Confidence 211 012 3589999999999999998876554 89999999
Q ss_pred eeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHH
Q 046808 374 LGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKA 453 (653)
Q Consensus 374 ~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~ 453 (653)
+|++||+|.++ +.||+|+|||+|+|++.|+.|+...+++..++.....++.++|++.-.+++...+...+ ..|
T Consensus 171 IGk~FRNEIsP-r~~l~R~REF~q~EiE~Fv~P~~~~~~~~y~~~~~~~fl~~iGi~~~~lrfr~h~~~El---AHY--- 243 (539)
T PRK14894 171 VGKAFRNEINP-RNFLFRVREFEQMEIEYFVMPGTDEEWHQRWLEARLAWWEQIGIPRSRITIYDVPPDEL---AHY--- 243 (539)
T ss_pred eeccccCccCC-CCceeecccchhheEEEEeCCCchHHHHHHHHHHHHHHHHHhCCCHHHeeeeecCcHHh---hhh---
Confidence 99999999998 79999999999999999999998888889999999999999999866666554321100 000
Q ss_pred HHHHHHHHHhcCCceEEcC---CCcccccc----eeeEEEecc-cCC-cccccceEEEecCCcccccEEEC-CCCCcccC
Q 046808 454 TSALRDALDDKGWDYQIDE---GGGAFYGP----KIDLKIEDA-LGR-KWQCSTIQVDFNLPQRFDIVYVD-SNSEKKRP 523 (653)
Q Consensus 454 ~~~l~~~l~~~g~~~~~~~---~~~~~~g~----~~d~~~~d~-~g~-~~~~~~i~~d~~~~~r~d~~~~~-~~g~~~~p 523 (653)
.+..+|.++.. |.....|. .+|+..-.. .+. .. ++.+.+.-....++.|.+ ..|++-+|
T Consensus 244 --------a~~~~D~e~~~p~~Gw~E~~Gia~RtdyDL~~H~~~s~~~~l---~~~~~~~~~s~~~l~~~~~~~~~~~iP 312 (539)
T PRK14894 244 --------SKRTFDLMYDYPNIGVQEIEGIANRTDYDLGSHSKDQEQLNL---TARVNPNEDSTARLTYFDQASGRHVVP 312 (539)
T ss_pred --------hhccEEEEEECCCCCeEEEEEeecccccCHHHHhhhcccCCc---eeeeccccCCCceEEEEeccCCcccCC
Confidence 01112222221 11111110 001100000 000 00 001111112233445543 46777889
Q ss_pred EEEEecccCchHHHHHHHHHh-h---------------------------------------------------------
Q 046808 524 IMIHRAVLGSLERFFGVLIEH-Y--------------------------------------------------------- 545 (653)
Q Consensus 524 ~~g~~~i~GgieRli~~L~e~-~--------------------------------------------------------- 545 (653)
+++..+. |++|++.+++++ |
T Consensus 313 ~ViEpS~--G~dR~~~a~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 390 (539)
T PRK14894 313 YVIEPSA--GVGRCMLAVMCEGYAEELTKAIPGEKLAAVGDALEAFLKSVGRSEKLAGEARDAILARGEALLQALPERLP 390 (539)
T ss_pred ceeecCc--chhHHHHHHHHHHHhhhhhcccccccccccccchhhhcccccccccccccccccccccccccccccccccc
Confidence 9999984 699988887643 1
Q ss_pred --------------------------------cC--CCCCCCCCceEEEEecCh---hhHHHHHHHHHHHHhCCC-eEEE
Q 046808 546 --------------------------------AG--DFPLWLSPIQARVLPVTD---TQLEYCNEVIKKLKTNGI-RAEI 587 (653)
Q Consensus 546 --------------------------------~~--~~P~~lap~~v~Vi~~~~---~~~~~a~~la~~Lr~~Gi-~v~~ 587 (653)
.+ .||+|+||+||.|+|+.+ +..++|.+|++.|+++|+ +|.+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~rgvLplp~wLAPvQVaVLPLs~~~~~l~eyAkeI~~~L~~~Gi~rv~~ 470 (539)
T PRK14894 391 EVEQLLAMPGADQIELGKKLRGQAQPLIDEHYRTVLRLKPRLAPIKVAVFPLKRNHEGLVATAKAVRRQLQVGGRMRTVY 470 (539)
T ss_pred ccccccccccccccccccccccccccCCCcccceecCCCcCCCCceEEEEeccccccchHHHHHHHHHHHHHCCCceEEE
Confidence 12 466999999999999996 345999999999999998 9999
Q ss_pred eCCCCHHHHHHHHHHcCCCEEEEE-------CcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHh
Q 046808 588 CHGERLPKLIRNAEKQKIPLMAVV-------GAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATE 648 (653)
Q Consensus 588 d~~~~~~kk~~~A~~~gip~~iii-------G~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~ 648 (653)
|++.++|+|+++|+.+|+||+|+| |++|.++|+||||+|++++|..++++++++.|++.++
T Consensus 471 DdsesIGKKyRraDeiGiPy~ITVD~~Tl~dGdkE~e~gTVTVR~RDs~eQ~rV~ideli~~L~~~~~ 538 (539)
T PRK14894 471 DDTGAIGKLYRRQDEIGTPFCITVDFDTIGQGKDPALAGTVTVRDRDTMAQERVPISELEAYLRDRVS 538 (539)
T ss_pred cCCCCHhHHHHhhhccCCCEEEEEeccccccccchhhcCeEEEEEeCCCeEEEEEHHHHHHHHHHHhc
Confidence 997799999999999999999999 8899999999999999999999999999999988764
No 26
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=100.00 E-value=5.4e-43 Score=381.61 Aligned_cols=377 Identities=25% Similarity=0.408 Sum_probs=261.2
Q ss_pred hhhcccCccccc--ccc--cCcceecCccccHHHHHHHHHHHHHHH-hcCCeEEecCccCchhhhhhcCcccccccccce
Q 046808 260 RLGQDLDLFSIQ--DEA--GGGLVFWHPKGSIVRHIIEDFWKKSHI-EHDYDLLYTPHVAKADLWKISGHLDFYRENMYD 334 (653)
Q Consensus 260 ~l~~~l~l~~~~--~~~--~~G~~~~lP~g~~l~~~I~~~~~~~~~-~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~ 334 (653)
.|+++-|++ |+ +.+ .+|+|||+|.|+.++++|++.|++.|. ..|+.+|++|+|.+.+||++|||++.|.+-|.+
T Consensus 8 ~l~~rrgf~-~~s~eIYgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~aSGh~~~F~D~mv~ 86 (551)
T TIGR00389 8 SLLKRRGFV-FQSFEIYGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNFTDWMVD 86 (551)
T ss_pred HHHHhcCCc-cccchhccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHhcCCccccCCceee
Confidence 455554543 43 333 369999999999999999999999994 778999999999999999999999999765543
Q ss_pred ecc--------------------------------------------------------------cCCceEEeccCChHH
Q 046808 335 QMN--------------------------------------------------------------IEDELYQLRPMNCPY 352 (653)
Q Consensus 335 ~~d--------------------------------------------------------------~~~~~l~LrP~~~~~ 352 (653)
+.. .++...+|||+|+++
T Consensus 87 ~~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQG 166 (551)
T TIGR00389 87 CKSCKERFRADHLIEEKLGKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQG 166 (551)
T ss_pred cCCCCCEecchHHHHHHhhhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchh
Confidence 210 113468899999999
Q ss_pred HHHHHHhhhcccC-CCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchh-HHH-------------------
Q 046808 353 HILVYQRKLQSYR-DFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQ-IKD------------------- 411 (653)
Q Consensus 353 ~~~~~~~~~~s~~-~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~-~~d------------------- 411 (653)
++..|++.+...+ .||+..+|+|++||+|.+| +.||+|+|||+|+|++.|+.|+. ...
T Consensus 167 iFvnFk~l~~~~~~klPfgiaQiGk~fRNEIsP-r~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~~~l~~~~~~~ 245 (551)
T TIGR00389 167 IFINFKRLLQFFRRKLPFGVAQIGKSFRNEISP-RNGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDILPLLPRQMQE 245 (551)
T ss_pred hHHhHHHHHHhcCCCCCeeehhhhHhhhcccCc-ccceEEeehhhhchhheecCcccccchhhHHHHHHHHhhccchhhh
Confidence 9999999877655 8999999999999999998 79999999999999999999952 212
Q ss_pred ---------------HHHHHHHHHHHHHHHcCCCeEEEEecCCcc--cccCCchhHHHHHHHHHHHHHhcCCc-------
Q 046808 412 ---------------EIRAVLDLTEEILLQFGFNKYEVNLSTKPE--KAVGGDDIWEKATSALRDALDDKGWD------- 467 (653)
Q Consensus 412 ---------------~~~e~l~~~~~il~~lGl~~~~v~l~~~~~--~~~g~~~~~~~~~~~l~~~l~~~g~~------- 467 (653)
+++-.+.....+|.++|++.-.+++-.... .+.-..++||. +++...||.
T Consensus 246 ~~~~eav~~g~i~n~~~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~~~~D~------e~~~~~Gw~E~~G~a~ 319 (551)
T TIGR00389 246 SGIGEAVESGMIENETLGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAKDCWDF------EFLTPYGWIECVGIAD 319 (551)
T ss_pred ccHHHHHHhcccchHHHHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhccccEeE------EEecCCCcEEEEEecc
Confidence 222233344555666666544444332211 00011122321 001111110
Q ss_pred ---eEEcC----CCcc------cccceeeE--EEe---cccCCcccc--------------cceE-----EEecCC-ccc
Q 046808 468 ---YQIDE----GGGA------FYGPKIDL--KIE---DALGRKWQC--------------STIQ-----VDFNLP-QRF 509 (653)
Q Consensus 468 ---~~~~~----~~~~------~~g~~~d~--~~~---d~~g~~~~~--------------~~i~-----~d~~~~-~r~ 509 (653)
|++.. ++.. +-.|+... .+. ..+|..+.- ..++ ..|.+. ..+
T Consensus 320 R~~yDL~~H~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (551)
T TIGR00389 320 RGDYDLTQHSKFSGKSLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEELDKNEVELDKDLV 399 (551)
T ss_pred ccccChHHHHHhhCCCeEEEeecCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhccceecchhhh
Confidence 11100 0000 00111100 000 011111100 0000 011110 111
Q ss_pred ccE--EECCCCCcccCEEEEecccCchHHHHHHHHHhhcC------------CCCCCCCCceEEEEecCh--hhHHHHHH
Q 046808 510 DIV--YVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAG------------DFPLWLSPIQARVLPVTD--TQLEYCNE 573 (653)
Q Consensus 510 d~~--~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~------------~~P~~lap~~v~Vi~~~~--~~~~~a~~ 573 (653)
.+. -....|++.+|+|++.++ |++|++++|+++..+ .||++++|++|+|+|+++ +....|.+
T Consensus 400 ~~~~~~~~~~~~~~~P~VIepS~--GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~~el~~~A~e 477 (551)
T TIGR00389 400 EIEMVTEVVHGEKYIPHVIEPSF--GIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNKEELKEIAKE 477 (551)
T ss_pred hheeeeeccCCcEecceEEEccc--CHHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCcHHHHHHHHH
Confidence 111 123357888999999984 699999999985432 689999999999999984 48889999
Q ss_pred HHHHHHhCCCeEEEeCCCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHH
Q 046808 574 VIKKLKTNGIRAEICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSA 646 (653)
Q Consensus 574 la~~Lr~~Gi~v~~d~~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~ 646 (653)
+++.||++|++|++|+..++++|+++|++.|+|++|+||++++++|+|+||+|++++|..++++++.+.+.++
T Consensus 478 Ia~~LR~~GI~VeiD~s~sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~eQ~~I~ldeL~~~L~e~ 550 (551)
T TIGR00389 478 IFQALRKTGIRIKYDDSGTIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSMKQVRVKIKELPSYIKKL 550 (551)
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEeeHHHHHHHHHhh
Confidence 9999999999999999335999999999999999999999999999999999999999999999998888754
No 27
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-41 Score=356.08 Aligned_cols=380 Identities=23% Similarity=0.418 Sum_probs=265.0
Q ss_pred hhhcccCccccc--cccc--CcceecCccccHHHHHHHHHHHHHHHh--cCCeEEecCccCchhhhhhcCcccccccccc
Q 046808 260 RLGQDLDLFSIQ--DEAG--GGLVFWHPKGSIVRHIIEDFWKKSHIE--HDYDLLYTPHVAKADLWKISGHLDFYRENMY 333 (653)
Q Consensus 260 ~l~~~l~l~~~~--~~~~--~G~~~~lP~g~~l~~~I~~~~~~~~~~--~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y 333 (653)
.|+++-| |.|+ +.+| +|+|||.|.|+.|+++|++.|++.|.. -|+.+|+||++.+.+||++|||.+.|.+-|-
T Consensus 11 ~l~KrRG-F~~~s~EIYGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv 89 (558)
T COG0423 11 ELAKRRG-FVFPSSEIYGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLV 89 (558)
T ss_pred HHHHhcc-cccccceeecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhcCccccccccee
Confidence 3444434 4565 4554 599999999999999999999999954 6899999999999999999999999975443
Q ss_pred eecc--------------------------------------------------------------cCCceEEeccCChH
Q 046808 334 DQMN--------------------------------------------------------------IEDELYQLRPMNCP 351 (653)
Q Consensus 334 ~~~d--------------------------------------------------------------~~~~~l~LrP~~~~ 351 (653)
.+++ .++...+|||+|.+
T Consensus 90 ~c~~c~~~yRADHLiEe~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQ 169 (558)
T COG0423 90 ECKKCGERYRADHLIEEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQ 169 (558)
T ss_pred eccccchhhhhhHHHHHHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccc
Confidence 2211 23568899999999
Q ss_pred HHHHHHHhhhcccC-CCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchh-------------------HHH
Q 046808 352 YHILVYQRKLQSYR-DFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQ-------------------IKD 411 (653)
Q Consensus 352 ~~~~~~~~~~~s~~-~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~-------------------~~d 411 (653)
+++..|++.....+ .||+.++|+|+.||||.+| ++||+|+|||+|+|++.|+.|+. ...
T Consensus 170 GiFvnFk~l~~~~r~klPFgiaQIGKsfRNEISP-r~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q 248 (558)
T COG0423 170 GIFVNFKNLLEFARNKLPFGIAQIGKSFRNEISP-RNGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQ 248 (558)
T ss_pred hhhhhhHHHHHHhccCCCeEEEeechhhccccCc-ccceeehhhhhhhheeeEECCCcccCcchhhhhhhhcccccHHHh
Confidence 99999998876654 7999999999999999999 79999999999999999999866 211
Q ss_pred H-----------------HHHHHHHHHHHHHHcCCCeEEEEecCCcccc--cCCchhHHHHHHHHHHHHHh-cCC-----
Q 046808 412 E-----------------IRAVLDLTEEILLQFGFNKYEVNLSTKPEKA--VGGDDIWEKATSALRDALDD-KGW----- 466 (653)
Q Consensus 412 ~-----------------~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~--~g~~~~~~~~~~~l~~~l~~-~g~----- 466 (653)
. ++-.+..+..++..+|++.-.+++-..+... .-..++|+.. ..-. .||
T Consensus 249 ~~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E------~~~~~~gWiE~~G 322 (558)
T COG0423 249 EEGTEEEAVEEGIVENETLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAE------YKFPFGGWIELVG 322 (558)
T ss_pred hhhhhhhhhhcceeechhHHHHHHHHHHHHHHcCCCHHHhhhhhcChHHHhhhhhcceeEE------EecCCCceEEEEE
Confidence 0 1233445566666777754334332221100 0011222210 0000 111
Q ss_pred -----ceEEcC----CCc------ccccceeeEE--E---ecccCCccc---------ccc-----eEEE-ecCC-cccc
Q 046808 467 -----DYQIDE----GGG------AFYGPKIDLK--I---EDALGRKWQ---------CST-----IQVD-FNLP-QRFD 510 (653)
Q Consensus 467 -----~~~~~~----~~~------~~~g~~~d~~--~---~d~~g~~~~---------~~~-----i~~d-~~~~-~r~d 510 (653)
+|++.. +.. .|-.|+..-+ + ...+|..+. .+. ..++ +.+. ....
T Consensus 323 iAdRtdYDL~~H~k~s~~~l~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~~~~~ 402 (558)
T COG0423 323 IADRTDYDLSRHSKFSGEDLTVFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSKDLVI 402 (558)
T ss_pred eecccccchhhhhhhccccceeeeccCCcceeeeeecccchhhcChhhhhhHHHHhhhhhhhhhhhhccCccccccchhh
Confidence 011000 000 0111211100 0 001111110 000 0000 0000 0000
Q ss_pred cE-EECCCCCcccCEEEEecccCchHHHHHHHHHhhc-----------CCCCCCCCCceEEEEecCh--hhHHHHHHHHH
Q 046808 511 IV-YVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYA-----------GDFPLWLSPIQARVLPVTD--TQLEYCNEVIK 576 (653)
Q Consensus 511 ~~-~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~-----------~~~P~~lap~~v~Vi~~~~--~~~~~a~~la~ 576 (653)
+. -....|++-+|+++..+. |++|++.+++++.- ..+|+++||++|+|+|+.. +..+.|.++.+
T Consensus 403 i~~~~~~~~e~~iP~VIEPSf--GidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k~~l~~~a~~i~~ 480 (558)
T COG0423 403 IEEVEKVTGEKYIPHVIEPSF--GIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKKDELVEIAKEIFE 480 (558)
T ss_pred eeeeeeccCceecCceeccCC--CchHHHHHHHHHhhcccccccceeEEecCcccCceEEEEEeeecccchhHHHHHHHH
Confidence 00 013346778999999984 59999998887631 1689999999999999975 48999999999
Q ss_pred HHHhCCCeEEEeCCCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHhh
Q 046808 577 KLKTNGIRAEICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATEN 649 (653)
Q Consensus 577 ~Lr~~Gi~v~~d~~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~ 649 (653)
.|++.|+.|.+|++.++|++++.+|.+|+||+|.|..+.+++++||||+|+|.+|+.|+++|+...|++.+.+
T Consensus 481 ~L~~~~~~v~yDdsGsIGrRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el~~~l~~~~~~ 553 (558)
T COG0423 481 KLRELGFNVDYDDSGSIGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEELADYLRELIKG 553 (558)
T ss_pred HHHhcCceEEecCCCcHhhhhhhccccCCceEEEecCCcccCCcEEEeecCchheeeeeHHHHHHHHHHHhcc
Confidence 9999999999999779999999999999999999999999999999999999999999999999999988764
No 28
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.7e-41 Score=365.27 Aligned_cols=338 Identities=18% Similarity=0.269 Sum_probs=258.9
Q ss_pred ccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhc-CcccccccccceecccCCceEEeccCChHH
Q 046808 274 AGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKIS-GHLDFYRENMYDQMNIEDELYQLRPMNCPY 352 (653)
Q Consensus 274 ~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~s-g~~~~~~~~~y~~~d~~~~~l~LrP~~~~~ 352 (653)
.++|++||+|.++.+++.|++.++++|++|||++|.||+||+.++|..+ +..+...++||+|.|++|+.++|||+.|++
T Consensus 6 ~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~~ 85 (423)
T PRK12420 6 NVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLTIP 85 (423)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccccHH
Confidence 5799999999999999999999999999999999999999999999865 444555689999999999999999999988
Q ss_pred HHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeE
Q 046808 353 HILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKY 432 (653)
Q Consensus 353 ~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~ 432 (653)
++++++.+. ..++|+|+||+|+|||+|.++ +| |.|||+|+|+|+||.+++.+| +|++.++.++++.||+ ++
T Consensus 86 iaR~va~~~--~~~~p~r~~y~g~vfR~~~~~--~g--r~rE~~Q~g~EiiG~~~~~ad--aEvi~la~~~l~~lg~-~~ 156 (423)
T PRK12420 86 FAKVVAMNP--NIRLPFKRYEIGKVFRDGPIK--QG--RFREFIQCDVDIVGVESVMAE--AELMSMAFELFRRLNL-EV 156 (423)
T ss_pred HHHHHHhCc--CCCCCeeEEEEcceECCCCCC--CC--ccceeEECCeeeECCCCCccc--HHHHHHHHHHHHHCCC-CE
Confidence 888877642 246899999999999999988 88 999999999999999999888 6999999999999999 79
Q ss_pred EEEecCCcc-----cccCCchhH----------------HHH-------------H------------------------
Q 046808 433 EVNLSTKPE-----KAVGGDDIW----------------EKA-------------T------------------------ 454 (653)
Q Consensus 433 ~v~l~~~~~-----~~~g~~~~~----------------~~~-------------~------------------------ 454 (653)
.|.+||..+ ..+|.++.+ ... .
T Consensus 157 ~i~l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 236 (423)
T PRK12420 157 TIQYNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSIADFKEAFNN 236 (423)
T ss_pred EEEEcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHHHHhccChhhHHHHHHhccC
Confidence 999999542 112211100 000 0
Q ss_pred ----------HHHHHHHHhcCCc--eEEcCCC---cccc-cceeeEEEecccCCcccccceEEEecCCcccccEEECCC-
Q 046808 455 ----------SALRDALDDKGWD--YQIDEGG---GAFY-GPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSN- 517 (653)
Q Consensus 455 ----------~~l~~~l~~~g~~--~~~~~~~---~~~~-g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~- 517 (653)
..+.+.|+..|++ ..+|.+. -.|| |..|+.-..+ .+.. +. ...|||||-.. ...
T Consensus 237 ~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~-~~~~---~~----i~~GGRYD~L~-~~f~ 307 (423)
T PRK12420 237 PLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKD-GSIT---SS----IGSGGRYDNII-GAFR 307 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecC-CCcc---cc----ccCCccHHHHH-HHhC
Confidence 0011122233332 2334331 1345 3333221111 0000 11 14579998211 222
Q ss_pred CC-cccCEEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHh-CCCeEEEeC-CCCHH
Q 046808 518 SE-KKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKT-NGIRAEICH-GERLP 594 (653)
Q Consensus 518 g~-~~~p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~-~Gi~v~~d~-~~~~~ 594 (653)
|. ...|++|+ ++ +++|++.++... +..+ .|.||+|+++++. ..|.+++++||+ +|++|++|. ..+++
T Consensus 308 ~~~~~~pAvGf-a~--~~~~l~~~l~~~--~~~~---~~~dvlI~~~~~~--~~a~~ia~~Lr~~~Gi~ve~~~~~~~l~ 377 (423)
T PRK12420 308 GDDMNYPTVGI-SF--GLDVIYTALSQK--ETIS---STADVFIIPLGTE--LQCLQIAQQLRSTTGLKVELELAGRKLK 377 (423)
T ss_pred CCCCCCCceeE-EE--cHHHHHHHHHhc--CCCC---CCceEEEEEcCCH--HHHHHHHHHHHhhcCCeEEEecCCcCHH
Confidence 21 45799997 65 699999888654 2222 5789999998654 369999999999 999999999 88999
Q ss_pred HHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHH
Q 046808 595 KLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDF 639 (653)
Q Consensus 595 kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el 639 (653)
+++++|++.|+|++++||++|.++|+|+||++.++++..++++++
T Consensus 378 ~~i~~A~~~g~~~iviig~~e~~~~~v~vr~~~~~~~~~v~~~~~ 422 (423)
T PRK12420 378 KALNYANKENIPYVLIIGEEEVSTGTVMLRNMKEGSEVKVPLSSL 422 (423)
T ss_pred HHHHHHHHcCCCEEEEEChhHHhcCeEEEEECCCCceeeeeHHHc
Confidence 999999999999999999999999999999999999999998875
No 29
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=1.9e-40 Score=360.53 Aligned_cols=335 Identities=24% Similarity=0.339 Sum_probs=265.7
Q ss_pred ccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCc--ccccccccceecccCCceEEeccCChH
Q 046808 274 AGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGH--LDFYRENMYDQMNIEDELYQLRPMNCP 351 (653)
Q Consensus 274 ~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~--~~~~~~~~y~~~d~~~~~l~LrP~~~~ 351 (653)
.++|++||+|.++.+++.|++.+++++.++||++|.||+|++.++|..+++ .+.+.++||+|.|.+|+.++|||+.|+
T Consensus 2 ~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~ 81 (397)
T TIGR00442 2 APRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGTA 81 (397)
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCcH
Confidence 578999999999999999999999999999999999999999999988743 333568999999999999999999999
Q ss_pred HHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCe
Q 046808 352 YHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNK 431 (653)
Q Consensus 352 ~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~ 431 (653)
++++++.... ++.++|+|+||+|+|||+|.++ .| |.|||+|+|+|+||.++..+| +|++.++.++|+.||+++
T Consensus 82 ~iaR~~~~~~-~~~~~p~r~~y~g~vfR~e~~~--~g--r~ref~Q~g~eiig~~~~~~d--~E~i~l~~e~l~~lg~~~ 154 (397)
T TIGR00442 82 PVARAVIENK-LLLPKPFKLYYIGPMFRYERPQ--KG--RYRQFHQFGVEVIGSDSPLAD--AEIIALAAEILKELGIKD 154 (397)
T ss_pred HHHHHHHhcc-cccCCCeEEEEEcCeecCCCCC--CC--cccceEEcCeeeeCCCCHHHH--HHHHHHHHHHHHHcCCCc
Confidence 9998887653 3467899999999999999987 78 999999999999999988887 599999999999999988
Q ss_pred EEEEecCCcc----------------c---ccCCch--hHH------------------------------HHH---HHH
Q 046808 432 YEVNLSTKPE----------------K---AVGGDD--IWE------------------------------KAT---SAL 457 (653)
Q Consensus 432 ~~v~l~~~~~----------------~---~~g~~~--~~~------------------------------~~~---~~l 457 (653)
+.+.+||..+ + .++... .+. .+. +.+
T Consensus 155 ~~i~i~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 234 (397)
T TIGR00442 155 FTLEINSLGILEGRLEYREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLKEAPKILDFLDEESRAHFEEL 234 (397)
T ss_pred eEEEecCcccHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHhcCHHHHHHhhHHHHHHHHHH
Confidence 9999999753 0 011000 000 000 112
Q ss_pred HHHHHhcCCceEEcCCC---cccc-cceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecccCc
Q 046808 458 RDALDDKGWDYQIDEGG---GAFY-GPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGS 533 (653)
Q Consensus 458 ~~~l~~~g~~~~~~~~~---~~~~-g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~Gg 533 (653)
.+.|...|+.+.+|++. -.|| |..++... +..|.. ..+ ..|||||-. ....|+...|++|+ ++ +
T Consensus 235 ~~~l~~~~~~i~~dl~~~r~~~YYtG~vFe~~~-~~~~~~---~~i----~~GGRYD~L-~~~f~~~~~~avGf-s~--~ 302 (397)
T TIGR00442 235 KELLDALGIPYKIDPSLVRGLDYYTGTVFEFVT-DELGAQ---GTI----CGGGRYDGL-VEELGGPPTPAVGF-AI--G 302 (397)
T ss_pred HHHHHHcCCCEEECCccccCchhhcceEEEEEE-CCCCcc---cee----eeccchHHH-HHHhCCCCCceEEe-ee--c
Confidence 23344556666666652 2566 44443322 222211 112 457899931 12233456799996 65 7
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEEC
Q 046808 534 LERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVG 612 (653)
Q Consensus 534 ieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG 612 (653)
++|++.+|.+. +.+|.+.+|.+|+|++.+++....+.+++++||++|++|+++. ..++++++++|++.|+|++++||
T Consensus 303 ~~~l~~~l~~~--~~~~~~~~~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~~~~l~k~~~~a~~~g~~~~i~ig 380 (397)
T TIGR00442 303 IERLLLLLEEL--GLEPPEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLGGRKLKKQLKYADKLGARFAVILG 380 (397)
T ss_pred HHHHHHHHHhc--CCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999998775 4566667889999999998888899999999999999999998 88999999999999999999999
Q ss_pred cccccCCeEEEEECCCC
Q 046808 613 AKEVDAQTVTVRSRFGG 629 (653)
Q Consensus 613 ~~e~~~~~V~vk~~~~~ 629 (653)
++|.++++|+||++.+|
T Consensus 381 ~~e~~~~~v~vrnl~~~ 397 (397)
T TIGR00442 381 EDELANGTVTLKDLETG 397 (397)
T ss_pred hhHHhCCeEEEEeCCCC
Confidence 99999999999999875
No 30
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-41 Score=339.80 Aligned_cols=362 Identities=23% Similarity=0.284 Sum_probs=271.3
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCC-hH
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMN-CP 351 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~-~~ 351 (653)
++++|++||-|..+.++++|.+.+.++|.+||+..|+||+||-.+++..+.+.|. +.+|.++|++|+.++|||.- .|
T Consensus 61 KtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEds--kLiYdlkDQGGEl~SLRYDLTVP 138 (518)
T KOG1936|consen 61 KTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDS--KLIYDLKDQGGELCSLRYDLTVP 138 (518)
T ss_pred cCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccccc--ceeEehhhcCCcEEEeecccccH
Confidence 6899999999999999999999999999999999999999999999999988885 89999999999999999965 55
Q ss_pred HHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchh-HHHHHHHHHHHHHHHHHHcCCC
Q 046808 352 YHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQ-IKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 352 ~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~-~~d~~~e~l~~~~~il~~lGl~ 430 (653)
.++.+++|++. -++.|+++++||.+.|...+| |+|||+|+|++|.|.-++ ..| +|++....++|..|||.
T Consensus 139 fARylAmNki~-----sikRy~iAkVyRRd~P~mtrG--R~REFYQcDFDIAG~~d~M~pd--aE~lkiv~e~L~~l~Ig 209 (518)
T KOG1936|consen 139 FARYLAMNKIT-----SIKRYHIAKVYRRDQPAMTRG--RYREFYQCDFDIAGQFDPMIPD--AECLKIVVEILSRLGIG 209 (518)
T ss_pred HHHHHHHcccc-----cceeeeEEEEEeccCchhhch--hhhhhhccCccccccCCCCCch--HHHHHHHHHHHhhcCcc
Confidence 55555666553 479999999999999976799 999999999999998877 455 69999999999999999
Q ss_pred eEEEEecCCcc-----cccCCch----------------hHHHHH--------------HH-------------------
Q 046808 431 KYEVNLSTKPE-----KAVGGDD----------------IWEKAT--------------SA------------------- 456 (653)
Q Consensus 431 ~~~v~l~~~~~-----~~~g~~~----------------~~~~~~--------------~~------------------- 456 (653)
+|.|++|||.+ ...|.++ .|+... ..
T Consensus 210 d~~iKvNhRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL~e~l~~ 289 (518)
T KOG1936|consen 210 DYGIKVNHRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDELLEKLIA 289 (518)
T ss_pred ceEEEecHHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHHHHHHHHhc
Confidence 99999999864 2233321 243211 01
Q ss_pred -------------------HHHHHHhcCCc--eEEcCC--Cc-ccccce-eeEEEe-----cccCCcccccc---eE-EE
Q 046808 457 -------------------LRDALDDKGWD--YQIDEG--GG-AFYGPK-IDLKIE-----DALGRKWQCST---IQ-VD 502 (653)
Q Consensus 457 -------------------l~~~l~~~g~~--~~~~~~--~~-~~~g~~-~d~~~~-----d~~g~~~~~~~---i~-~d 502 (653)
|.+.|+..|++ ...+.+ +| +||+.. ++-... ...++.-+.+. .. -.
T Consensus 290 d~~l~~n~~a~eal~dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~~e~~~vGS 369 (518)
T KOG1936|consen 290 DPKLSQNEAAKEALADLKQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGSTEPGGVGS 369 (518)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhccccccCCCccc
Confidence 11112222322 111111 12 455322 221110 00000000000 00 00
Q ss_pred ecCCcccccE--EECCCCCcccCEEEEecccCchHHHHHHHHHhhcCC-CCCCCCCceEEEEecChhhHHHHHHHHHHHH
Q 046808 503 FNLPQRFDIV--YVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGD-FPLWLSPIQARVLPVTDTQLEYCNEVIKKLK 579 (653)
Q Consensus 503 ~~~~~r~d~~--~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~~-~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr 579 (653)
-..|+|||-. ..++.+ .++|++|. ++ |++|++..|.+..... .-....-.+|+|............++.+.||
T Consensus 370 vaaGGRYDnLv~mf~~k~-~~vPcvG~-S~--GVeRiFsile~r~~~~~~~iR~t~t~V~V~~~~k~~l~eR~k~v~~Lw 445 (518)
T KOG1936|consen 370 VAAGGRYDNLVGMFDKKG-DKVPCVGQ-SV--GVERIFSILEQRAATVATKIRTTETQVYVAAAGKNLLFERLKVVNALW 445 (518)
T ss_pred cccCcchhhHHHHhcccc-CcCCccce-ee--hHhHHHHHHHHHHHhhhhccccCceEEEEEecCCchHHHHHHHHHHHH
Confidence 1336899832 223222 36899986 55 6999998887654321 1111244689999888888999999999999
Q ss_pred hCCCeEEEeC--CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHhh
Q 046808 580 TNGIRAEICH--GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATEN 649 (653)
Q Consensus 580 ~~Gi~v~~d~--~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~ 649 (653)
.+||.+++-+ +.++-+|+++|++.|||+++|+|++|+++|.|+||+..+++.+.++.++++..|++++.+
T Consensus 446 ~agI~aE~~yk~~~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~re~~~v~~e~~v~~l~~~l~~ 517 (518)
T KOG1936|consen 446 DAGIKAEYLYKANPKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNVGTREEVLVKREQFVSELKDLLSQ 517 (518)
T ss_pred hcCcchhhhhhcCccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEecccccceeccHHHHHHHHHHHhcC
Confidence 9999999888 678999999999999999999999999999999999999999999999999999988754
No 31
>PLN02734 glycyl-tRNA synthetase
Probab=100.00 E-value=6.8e-41 Score=369.60 Aligned_cols=370 Identities=22% Similarity=0.362 Sum_probs=267.2
Q ss_pred cccc--cccc--CcceecCccccHHHHHHHHHHHHHHH-hcCCeEEecCccCchhhhhhcCcccccccccceec------
Q 046808 268 FSIQ--DEAG--GGLVFWHPKGSIVRHIIEDFWKKSHI-EHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM------ 336 (653)
Q Consensus 268 ~~~~--~~~~--~G~~~~lP~g~~l~~~I~~~~~~~~~-~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~------ 336 (653)
|.|+ +.+| +|+|||.|.|+.++++|++.||+.|. ..+.-+|++|+|.+..||++|||.+.|.+-|-+..
T Consensus 87 F~~pSfeIYGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D~mv~~~~~~~~~ 166 (684)
T PLN02734 87 FYIPSFKIYGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCF 166 (684)
T ss_pred CccccccccCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeecCCcccccceeeEcCCCCcEe
Confidence 5555 4554 59999999999999999999999995 45677999999999999999999999864332110
Q ss_pred -----------------------------------c-----------------------------------------cCC
Q 046808 337 -----------------------------------N-----------------------------------------IED 340 (653)
Q Consensus 337 -----------------------------------d-----------------------------------------~~~ 340 (653)
| .++
T Consensus 167 RADhlie~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF~T~IGp~~~ 246 (684)
T PLN02734 167 RADHLLKDFCEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTSIGPSGL 246 (684)
T ss_pred cchHHHHHHHHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccceeecccCcCC
Confidence 0 123
Q ss_pred ceEEeccCChHHHHHHHHhhhcccC-CCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhH----------
Q 046808 341 ELYQLRPMNCPYHILVYQRKLQSYR-DFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQI---------- 409 (653)
Q Consensus 341 ~~l~LrP~~~~~~~~~~~~~~~s~~-~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~---------- 409 (653)
..-+|||+|+++++..|++.+..++ .||+-.+|+|+.||+|.+| +.||+|+|||+|+|++.|+.|+..
T Consensus 247 ~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsP-R~gl~R~REF~qaEiE~Fv~P~~k~h~~f~~v~~ 325 (684)
T PLN02734 247 SVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISP-RQGLLRVREFTLAEIEHFVDPEDKSHPKFSEVAD 325 (684)
T ss_pred ccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCc-ccceeeechhhhhhhheecCcccccccchhhhhh
Confidence 4788999999999999998876655 7999999999999999998 799999999999999999998732
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHcCCCeEEEEecCCcc--cccCCchhHHHHHH
Q 046808 410 --------------------------------KDEIRAVLDLTEEILLQFGFNKYEVNLSTKPE--KAVGGDDIWEKATS 455 (653)
Q Consensus 410 --------------------------------~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~--~~~g~~~~~~~~~~ 455 (653)
.+++...+.....+|.++||+.-.+++-.... .+.-..++||.
T Consensus 326 ~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~--- 402 (684)
T PLN02734 326 LEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDA--- 402 (684)
T ss_pred hhhhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhccEeE---
Confidence 23455666667777777888655555543321 01111233431
Q ss_pred HHHHHHHhcCCc----------eEEcC----CCcc------cccceee--EEEe---cccCCccc---------------
Q 046808 456 ALRDALDDKGWD----------YQIDE----GGGA------FYGPKID--LKIE---DALGRKWQ--------------- 495 (653)
Q Consensus 456 ~l~~~l~~~g~~----------~~~~~----~~~~------~~g~~~d--~~~~---d~~g~~~~--------------- 495 (653)
+++...||. |++.. ++.. |-.|+.. +.+. ..+|..+.
T Consensus 403 ---E~~~~~GWiE~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g~~fk~~~~~v~~~l~~~~~ 479 (684)
T PLN02734 403 ---EIECSYGWIECVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVVVEALEAMNE 479 (684)
T ss_pred ---EEecCCCcEEEEEeccccccchHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhhHHHHHHHHHHHHHHHhcch
Confidence 111122321 11110 0000 1122211 1100 01121110
Q ss_pred ------------ccceEEEec-CCccccc-----EE----ECCCCCcccCEEEEecccCchHHHHHHHHHhhc-----C-
Q 046808 496 ------------CSTIQVDFN-LPQRFDI-----VY----VDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYA-----G- 547 (653)
Q Consensus 496 ------------~~~i~~d~~-~~~r~d~-----~~----~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~-----~- 547 (653)
-+.+.++.. .|+.|.+ .+ ....|++-+|+|+..+ + ||+|++++++|++. +
T Consensus 480 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~iP~VIEPS-~-GIgRIl~AilE~s~~~~~~De 557 (684)
T PLN02734 480 KEAMEMKAKLESKGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPS-F-GIGRIIYCLFEHSFYTRPGDE 557 (684)
T ss_pred hHHHHHHHhhhhcCceeeeecccCcceeechhheeeeeeeeeecCceecCceEecC-c-cHHHHHHHHHHHHhccccCCC
Confidence 001111111 1222222 11 2345778899999997 4 59999999999754 2
Q ss_pred -----CCCCCCCCceEEEEecCh--hhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCC
Q 046808 548 -----DFPLWLSPIQARVLPVTD--TQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQ 619 (653)
Q Consensus 548 -----~~P~~lap~~v~Vi~~~~--~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~ 619 (653)
.||+|+||++|.|+|+.. +..+.|.+|++.||++|++|.+|+ +.++|+|+++|+++|+|++|+||. +|
T Consensus 558 ~R~~L~~Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelDd~~~SIGKRyrrADeiGIPf~ItIG~----dg 633 (684)
T PLN02734 558 QLNVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDITGTSIGKRYARTDELGVPFAVTVDS----DG 633 (684)
T ss_pred cceEEecCcccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHHHHcCCCEEEEECC----CC
Confidence 699999999999999863 468899999999999999999999 889999999999999999999996 89
Q ss_pred eEEEEECCCCceeeeeHHHHHHHHHHHHhhh
Q 046808 620 TVTVRSRFGGELGTMKVDDFISRIKSATENR 650 (653)
Q Consensus 620 ~V~vk~~~~~~q~~v~~~el~~~i~~~~~~~ 650 (653)
+|+||+|++++|..++++++++.|+++++..
T Consensus 634 tVTIRdRdsgeQ~rV~ldeLv~~I~~li~~~ 664 (684)
T PLN02734 634 SVTIRERDSKDQVRVPVEEVASVVKDLTDGR 664 (684)
T ss_pred eEEEEECCCCceEEeeHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999988765
No 32
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=6.5e-41 Score=347.74 Aligned_cols=265 Identities=21% Similarity=0.339 Sum_probs=221.6
Q ss_pred HhhhchhHhhhcccCccccc---ccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccc
Q 046808 252 EAKRRDHRRLGQDLDLFSIQ---DEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFY 328 (653)
Q Consensus 252 eakk~~h~~l~~~l~l~~~~---~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~ 328 (653)
.++++||++||+++|||+++ +.+|+|++.|+|.|++++++|++++++.+.+.||++|.||.|.+.++|+++||++.|
T Consensus 15 ~~~~~~H~~i~~~~~l~d~~~~~~~~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~ 94 (297)
T cd00770 15 DFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKF 94 (297)
T ss_pred CCCCCCHHHHHHHCCCccchhhcccCCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccC
Confidence 46789999999999999885 457889999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCC---CCCCcceeceeEEcceeeeeC
Q 046808 329 RENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSG---SLHGLFRVRGFTQDDAHIFCL 405 (653)
Q Consensus 329 ~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~---~~~GL~R~REF~q~d~~ifg~ 405 (653)
.++||++.| ++++|+||+|++++.+++++..||++||+|++|+|+|||+|.++ .++||+|+|||+|.|+++||.
T Consensus 95 ~~~~f~v~~---~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~ 171 (297)
T cd00770 95 DEQLYKVEG---EDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTK 171 (297)
T ss_pred hhcccEecC---CCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEEC
Confidence 999999855 78999999999999999999999999999999999999999985 258999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEE
Q 046808 406 EDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLK 485 (653)
Q Consensus 406 ~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~ 485 (653)
++++.+++.++++++.++++.|||+...+..+++. +|..... ++|++
T Consensus 172 ~e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~~~d---l~~~~~~------------------------------~~d~e 218 (297)
T cd00770 172 PEESWEELEELISNAEEILQELGLPYRVVNICTGD---LGFAAAK------------------------------KYDIE 218 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcEEEEEccCcc---ccCchhh------------------------------heeeh
Confidence 99999999999999999999999987777766654 3222100 11111
Q ss_pred Eec----ccCCcccccceEEEecCCcccccEEECCC-CCcccCEE-EEecccCchHHHHHHHHHhhcC----CCC-CCCC
Q 046808 486 IED----ALGRKWQCSTIQVDFNLPQRFDIVYVDSN-SEKKRPIM-IHRAVLGSLERFFGVLIEHYAG----DFP-LWLS 554 (653)
Q Consensus 486 ~~d----~~g~~~~~~~i~~d~~~~~r~d~~~~~~~-g~~~~p~~-g~~~i~GgieRli~~L~e~~~~----~~P-~~la 554 (653)
++. .++...+|+++ .||++ +|++++|.+.+ |+.+.+++ +++|+ |++|++++|+|++++ .|| ..++
T Consensus 219 ~~~p~~~~~~e~~s~s~~-~d~~s-~r~~i~y~~~~~~~~~~~~~~~~~~~--~~~R~l~alle~~~~~~g~v~~P~~l~ 294 (297)
T cd00770 219 AWMPGQGKYREISSCSNC-TDFQA-RRLNIRYRDKKDGKKQYVHTLNGTAL--ATPRTIVAILENYQTEDGSVVIPEVLR 294 (297)
T ss_pred eecCCCCCeEEEEEccCc-cChhh-hhcCcEEecCCCCCeeeeeEecccch--HHHHHHHHHHHhCcCCCCcEeCchhhc
Confidence 111 12223445555 78887 99999999884 77777777 65564 699999999999864 344 5566
Q ss_pred Cc
Q 046808 555 PI 556 (653)
Q Consensus 555 p~ 556 (653)
|+
T Consensus 295 py 296 (297)
T cd00770 295 PY 296 (297)
T ss_pred cc
Confidence 64
No 33
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-39 Score=351.65 Aligned_cols=262 Identities=20% Similarity=0.338 Sum_probs=225.8
Q ss_pred hhhchhHhhhcccCccccc---ccccCcceecCccccHHHHHHHHHHHHHHH-hcCCeEEecCccCchhhhhhcCccccc
Q 046808 253 AKRRDHRRLGQDLDLFSIQ---DEAGGGLVFWHPKGSIVRHIIEDFWKKSHI-EHDYDLLYTPHVAKADLWKISGHLDFY 328 (653)
Q Consensus 253 akk~~h~~l~~~l~l~~~~---~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~-~~G~~~I~tP~le~~~l~~~sg~~~~~ 328 (653)
+.+++|++||+++|||+|+ +.+|+|+|.|+|.|++++++|++++.+.+. +.||++|.||.|.+.++|.++||++.|
T Consensus 134 f~~~dH~ei~~~l~l~d~~~~~~~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f 213 (425)
T PRK05431 134 FEPKDHWELGEKLGILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKF 213 (425)
T ss_pred CCCCCHHHHHhhcCceecccccccCCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccc
Confidence 3468999999999999986 467899999999999999999999999998 999999999999999999999999999
Q ss_pred ccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCC---CCCCcceeceeEEcceeeeeC
Q 046808 329 RENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSG---SLHGLFRVRGFTQDDAHIFCL 405 (653)
Q Consensus 329 ~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~---~~~GL~R~REF~q~d~~ifg~ 405 (653)
.++||++. +++++|+||+|++++.++++++.||++||+|++++++|||+|.++ .++||+|+|||+|.|+++||.
T Consensus 214 ~~~ly~i~---~~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~ 290 (425)
T PRK05431 214 EEDLYKIE---DDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTK 290 (425)
T ss_pred hhhceEec---CCCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEEC
Confidence 99999984 468999999999999999999999999999999999999999965 269999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCc-------hhHHHHHHHHHHHHHhcCCceEEcCCCcccc
Q 046808 406 EDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGD-------DIWEKATSALRDALDDKGWDYQIDEGGGAFY 478 (653)
Q Consensus 406 ~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~-------~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~ 478 (653)
++++.+++.++++++.++|+.|||+...+.++++. +|.. +.|..+ .
T Consensus 291 ~e~s~~~~~~~l~~~~~i~~~Lglpyr~v~~~s~d---lg~~a~~~~DiE~w~p~--------------------~---- 343 (425)
T PRK05431 291 PEDSYAELEELTANAEEILQKLELPYRVVLLCTGD---LGFSAAKTYDLEVWLPS--------------------Q---- 343 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcc---cCCchHheecHHHhCcc--------------------c----
Confidence 99999999999999999999999987677887765 3322 222211 0
Q ss_pred cceeeEEEecccCCcccccceEEEecCCcccccEEECC-CCCcccCEE-EEecccCchHHHHHHHHHhhcC-----CCCC
Q 046808 479 GPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDS-NSEKKRPIM-IHRAVLGSLERFFGVLIEHYAG-----DFPL 551 (653)
Q Consensus 479 g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~-~g~~~~p~~-g~~~i~GgieRli~~L~e~~~~-----~~P~ 551 (653)
..++...+|++| .||+. +|++++|.+. +|+...+++ .++|+ +++|+++||+|+|++ .||+
T Consensus 344 ---------~~~~ev~s~snc-~d~qs-rr~~i~~~~~~~~~~~~~htln~t~~--a~~R~l~ailE~~q~~~g~i~iP~ 410 (425)
T PRK05431 344 ---------NTYREISSCSNC-TDFQA-RRANIRYRDEGDGKPELVHTLNGSGL--AVGRTLVAILENYQQADGSVTIPE 410 (425)
T ss_pred ---------CCeeEEEEecCc-cchhh-hhcCcEEecCCCCceeEEEEeCCchh--hHHHHHHHHHHHCCCCCCcEECCh
Confidence 122334467776 89987 9999999987 777778885 55555 699999999999864 6899
Q ss_pred CCCCce
Q 046808 552 WLSPIQ 557 (653)
Q Consensus 552 ~lap~~ 557 (653)
.++|+-
T Consensus 411 ~l~py~ 416 (425)
T PRK05431 411 VLRPYM 416 (425)
T ss_pred hhhccc
Confidence 999873
No 34
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=100.00 E-value=3.3e-39 Score=329.30 Aligned_cols=247 Identities=21% Similarity=0.320 Sum_probs=211.0
Q ss_pred hHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhh-hcCcccccccccceec
Q 046808 258 HRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWK-ISGHLDFYRENMYDQM 336 (653)
Q Consensus 258 h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~-~sg~~~~~~~~~y~~~ 336 (653)
+.+|++++|+++++ .++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|. .+||++.|.++||++.
T Consensus 6 ~~~l~~~~~~~d~~--~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~ 83 (261)
T cd00778 6 YTEVITKAELIDYG--PVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVT 83 (261)
T ss_pred HHHHHHHhCCcccC--CCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEE
Confidence 46789999998773 46799999999999999999999999999999999999999999984 6899999999999998
Q ss_pred ccCC----ceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCchhHHH
Q 046808 337 NIED----ELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKD 411 (653)
Q Consensus 337 d~~~----~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~~~~~d 411 (653)
|.++ ++++||||+|+.++.++++++.||++||+|+||+|+|||+|.++ ++||+|+|||+|.|+|+ |++++++.+
T Consensus 84 ~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~-~~Gl~R~reF~~~d~h~~~~~~e~~~~ 162 (261)
T cd00778 84 HGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKT-TRPFLRTREFLWQEGHTAHATEEEAEE 162 (261)
T ss_pred ecCCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCC-CCceeEeeeeeeeceeeccCCHHHHHH
Confidence 8764 48999999999999999999999999999999999999999998 59999999999999985 899999999
Q ss_pred HHHHHHHHHHHHHHHc-CCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEeccc
Q 046808 412 EIRAVLDLTEEILLQF-GFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDAL 490 (653)
Q Consensus 412 ~~~e~l~~~~~il~~l-Gl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~ 490 (653)
++.++++++.++|+.| ||+...+..++ ..++.|.. +..+++..+. .
T Consensus 163 ~~~~~~~~~~~i~~~llgl~~~~~~~~~-~d~~~~a~------------------------------~~~~ie~~~p--~ 209 (261)
T cd00778 163 EVLQILDLYKEFYEDLLAIPVVKGRKTE-WEKFAGAD------------------------------YTYTIEAMMP--D 209 (261)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEecCCc-cccCCCCc------------------------------cceEEEEEee--C
Confidence 9999999999999999 99633332221 12222222 2223444444 5
Q ss_pred CCcccccce-EEEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHH
Q 046808 491 GRKWQCSTI-QVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIE 543 (653)
Q Consensus 491 g~~~~~~~i-~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e 543 (653)
|+.++++++ ++|+..++|||++|.+++|+.+.|++.++ |.++|++++|+.
T Consensus 210 ~~~~ev~s~~~l~~~~s~r~~i~y~~~~g~~~~~h~~~~---g~~~R~i~ali~ 260 (261)
T cd00778 210 GRALQSGTSHNLGQNFSKAFDIKYQDKDGQKEYVHQTSW---GISTRLIGAIIM 260 (261)
T ss_pred CCEEEEEeccccccccchhcCCEEECCCCCCcCcEEecc---cHHHHHHHHHHh
Confidence 888999998 68999999999999999998888988654 456999999874
No 35
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=4.3e-39 Score=347.35 Aligned_cols=267 Identities=20% Similarity=0.338 Sum_probs=221.8
Q ss_pred HhhhchhHhhhcccCcccccc---cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccc
Q 046808 252 EAKRRDHRRLGQDLDLFSIQD---EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFY 328 (653)
Q Consensus 252 eakk~~h~~l~~~l~l~~~~~---~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~ 328 (653)
+..+++|++||+++|+|+|++ .+|+|+|.|+|.|++++++|++++++.+.+.||++|.+|.|.+.++|.++|+++.|
T Consensus 136 ~~~~~~H~~l~~~l~l~d~~~~~~~~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f 215 (418)
T TIGR00414 136 DFKPKPHWELGEKLGGLDFDRAVKVTGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKF 215 (418)
T ss_pred CCCCCCHHHHHHhCCCccccccccCCCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccc
Confidence 345779999999999998863 57889999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCC---CCCCcceeceeEEcceeeeeC
Q 046808 329 RENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSG---SLHGLFRVRGFTQDDAHIFCL 405 (653)
Q Consensus 329 ~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~---~~~GL~R~REF~q~d~~ifg~ 405 (653)
.++||.+. +++++|+||+|++++.++++++.||++||+|++++|+|||+|.++ .++||+|+|||+|.|+++||.
T Consensus 216 ~~~~y~i~---~~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~ 292 (418)
T TIGR00414 216 EEDIFKLE---DTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCK 292 (418)
T ss_pred cccceEec---CCCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcC
Confidence 99999984 467999999999999999999999999999999999999999964 257999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCch--hHHHHHHHHHHHHHhcCCceEEcCCCcccccceee
Q 046808 406 EDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDD--IWEKATSALRDALDDKGWDYQIDEGGGAFYGPKID 483 (653)
Q Consensus 406 ~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~--~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d 483 (653)
++++.+++.++++++.++|+.||||...+.++++. +|... .|+ +.- +-++.
T Consensus 293 ~e~s~~~~~~~~~~~~~i~~~Lglp~r~v~~~t~d---lg~~a~~~yd-----iE~----------w~p~~--------- 345 (418)
T TIGR00414 293 PEESAEELEEMTSDAEQILQELELPYRVVNLCSGD---LGFSAAKKYD-----LEV----------WMPGQ--------- 345 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceEEEecCccc---cccCHhhhhh-----HHH----------hCCCc---------
Confidence 99999999999999999999999987777887764 33221 110 000 00000
Q ss_pred EEEecccCCcccccceEEEecCCcccccEEECCCC-CcccCEE-EEecccCchHHHHHHHHHhhcC-----CCCCCCCCc
Q 046808 484 LKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNS-EKKRPIM-IHRAVLGSLERFFGVLIEHYAG-----DFPLWLSPI 556 (653)
Q Consensus 484 ~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g-~~~~p~~-g~~~i~GgieRli~~L~e~~~~-----~~P~~lap~ 556 (653)
..++...+|+++ .||+. +|++++|.+.++ +...+++ .++|+ |++|+|+||+|++++ .||..|+|+
T Consensus 346 ----~~~~ev~s~sn~-~d~qs-rr~~i~y~~~~~~~~~~vh~ln~~~~--ai~R~i~Aile~~~~~~G~i~iP~~l~py 417 (418)
T TIGR00414 346 ----NTYREISSCSNC-TDFQA-RRLNIRYKDKNKGKNKYVHTLNGTAL--AIGRTIVAILENYQTEDGSVEIPEVLRKY 417 (418)
T ss_pred ----CceEEEEEEcCc-chHhH-HhCCcEEECCCCCceEEEEeecCcch--HHHHHHHHHHHHccCCCCCEeCChhcccc
Confidence 112333456766 88887 999999998754 4466666 45564 799999999999864 489988886
No 36
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=6.9e-39 Score=325.88 Aligned_cols=245 Identities=20% Similarity=0.325 Sum_probs=199.7
Q ss_pred hhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccC
Q 046808 260 RLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIE 339 (653)
Q Consensus 260 ~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~ 339 (653)
+|+.+.|++ ..+++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|+++||++.|.++||.+.|.+
T Consensus 8 ~l~~~ag~~---~~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~ 84 (255)
T cd00779 8 KLLLRAGFI---RQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRH 84 (255)
T ss_pred HHHHHcCCc---ccCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCC
Confidence 345555875 24789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCch-hHHHHHHHHHH
Q 046808 340 DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLED-QIKDEIRAVLD 418 (653)
Q Consensus 340 ~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~-~~~d~~~e~l~ 418 (653)
+++++||||+|+.++.++++++.++++||+|+||+|+|||+|.++ ++||+|+|||+|.|+|+||.++ ++.+++.+++.
T Consensus 85 ~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~-~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~ 163 (255)
T cd00779 85 GKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRP-RFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQ 163 (255)
T ss_pred CCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCC-CCceeeeeeEeHhhheeccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999544 4999999999999999999975 56667789999
Q ss_pred HHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccccc
Q 046808 419 LTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCST 498 (653)
Q Consensus 419 ~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~ 498 (653)
++.++|+.|||+...+..+.+ .+|... ..+++++.+-.-+...++++
T Consensus 164 ~~~~il~~Lgl~~~~~~~~~~---~~gg~~------------------------------s~~~~~e~~~~~~~~~e~~s 210 (255)
T cd00779 164 AYSRIFKRLGLPFVKVEADSG---AIGGSL------------------------------SHEFHVLSPLKITKGIEVGH 210 (255)
T ss_pred HHHHHHHHcCCcEEEEEecCC---CCCCcc------------------------------cEEEEEEEecCCCCeEEEEe
Confidence 999999999996444443222 233221 11223332211122223333
Q ss_pred eE--EEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHh
Q 046808 499 IQ--VDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEH 544 (653)
Q Consensus 499 i~--~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~ 544 (653)
+. -|++. ++||++|.+++|+.+.++|+++|+ |++|+++|++|+
T Consensus 211 ~~~lg~~~s-r~~~i~~~~~~~~~~~~~~~~~gi--~~~R~l~ai~e~ 255 (255)
T cd00779 211 IFQLGTKYS-KALGATFLDENGKPKPLEMGCYGI--GVSRLLAAIIEQ 255 (255)
T ss_pred eeecchhHH-HhcCcEEECCCCCEEeeEecCccc--hHHHHHHHHHcC
Confidence 21 34444 899999999999999999999887 799999999984
No 37
>PLN02678 seryl-tRNA synthetase
Probab=100.00 E-value=1.5e-37 Score=333.60 Aligned_cols=285 Identities=20% Similarity=0.298 Sum_probs=234.3
Q ss_pred ecCCccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCccccc---ccccCcceecCccccHHHHHHHHHHHH
Q 046808 222 GDEKKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQ---DEAGGGLVFWHPKGSIVRHIIEDFWKK 298 (653)
Q Consensus 222 ~~~k~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~---~~~~~G~~~~lP~g~~l~~~I~~~~~~ 298 (653)
++++++.++|.+|.++... ++++|++||++||+|+|+ +.+|+++|+|.|.|+++.++|++++++
T Consensus 120 ~de~~n~~vr~~g~~~~~~-------------~~~dH~~Lg~~l~l~d~~~~~~vsG~~~y~l~g~ga~L~~AL~~y~ld 186 (448)
T PLN02678 120 NDEANNAVVRTWGEKRQEP-------------KLKNHVDLVELLGIVDTERGADVAGGRGYYLKGAGVLLNQALINFGLA 186 (448)
T ss_pred CCcCCCEEEEEEcCCCCCC-------------CCCCHHHHHhhccCccchhhhhhcCceeEEECCHHHHHHHHHHHHHHH
Confidence 3556778889999865321 568999999999999996 445666777777999999999999999
Q ss_pred HHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeee
Q 046808 299 SHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVY 378 (653)
Q Consensus 299 ~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~f 378 (653)
.+.++||++|.||.|.+.++|.+|||++.|.++||.+.+. +++++|.||+|++.+.++.+...++++||+|++.+++||
T Consensus 187 ~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~-~~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cf 265 (448)
T PLN02678 187 FLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGE-GDDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCF 265 (448)
T ss_pred HHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCC-CCceeeecccccccChHHhcccCCHHhCCceeEEecccc
Confidence 9999999999999999999999999999999999998543 457889999999999999999999999999999999999
Q ss_pred ecCCCC---CCCCcceeceeEEcceeeeeCchh--HHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHH
Q 046808 379 RYELSG---SLHGLFRVRGFTQDDAHIFCLEDQ--IKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKA 453 (653)
Q Consensus 379 R~E~~~---~~~GL~R~REF~q~d~~ifg~~~~--~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~ 453 (653)
|+|.+. .++||+|+|||+|.|++.|+.|++ +.+++++++..+.++|+.||||...+.+++.. +|....
T Consensus 266 R~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpyrvv~~~sgd---lg~~a~---- 338 (448)
T PLN02678 266 RKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIVSGA---LNDAAA---- 338 (448)
T ss_pred ccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCCeEEEeecccc---cCCchh----
Confidence 999973 479999999999999999999998 99999999999999999999988888888875 333210
Q ss_pred HHHHHHHHHhcCCceEEcCCCcccccceeeEEEe----cccCCcccccceEEEecCCcccccEEECC---CCCcccCEEE
Q 046808 454 TSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIE----DALGRKWQCSTIQVDFNLPQRFDIVYVDS---NSEKKRPIMI 526 (653)
Q Consensus 454 ~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~----d~~g~~~~~~~i~~d~~~~~r~d~~~~~~---~g~~~~p~~g 526 (653)
.++|+++| ..++...+|++| .|||. +|++++|.+. +|+...+|+.
T Consensus 339 --------------------------~~yDiE~W~P~~~~y~EvsS~Snc-~D~Qa-RRl~iryr~~~~~~~~~~~vHTL 390 (448)
T PLN02678 339 --------------------------KKYDLEAWFPASKTYRELVSCSNC-TDYQS-RRLEIRYGQKKSNEQTKQYVHLL 390 (448)
T ss_pred --------------------------hceeeEeeccccCCceEEeeeccc-ccHhh-hcccceecccccCCCCceeEEec
Confidence 01233332 245666789998 99998 9999999865 4455666666
Q ss_pred EecccCchHHHHHHHHHhhcC----CCCCCCCCc
Q 046808 527 HRAVLGSLERFFGVLIEHYAG----DFPLWLSPI 556 (653)
Q Consensus 527 ~~~i~GgieRli~~L~e~~~~----~~P~~lap~ 556 (653)
..+ ...++|+|.||+|+|+. .+|..|.|+
T Consensus 391 Ngt-~lA~~R~l~AiLEn~Q~~dgi~iP~vL~py 423 (448)
T PLN02678 391 NST-LTATERTLCCILENYQTEDGVRVPEVLQPF 423 (448)
T ss_pred CCc-hhHHHHHHHHHHHhCcCCCCeECChhhhhh
Confidence 532 12599999999999864 356555554
No 38
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=1.1e-36 Score=310.50 Aligned_cols=247 Identities=19% Similarity=0.264 Sum_probs=201.7
Q ss_pred HhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccc-cccccceecc
Q 046808 259 RRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDF-YRENMYDQMN 337 (653)
Q Consensus 259 ~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~-~~~~~y~~~d 337 (653)
.+++.+.|+++. ..++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.++|+++. +.++||.+.|
T Consensus 7 ~~~l~~ag~~~~--~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~ 84 (264)
T cd00772 7 LEHIGKAELADQ--GPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKD 84 (264)
T ss_pred HHHHHhcCCccc--cCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEe
Confidence 345555588654 3489999999999999999999999999999999999999999999999999876 4489999988
Q ss_pred cCC----ceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee-eCchhHHHH
Q 046808 338 IED----ELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF-CLEDQIKDE 412 (653)
Q Consensus 338 ~~~----~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if-g~~~~~~d~ 412 (653)
.++ ++++||||+|++++.++++++.+|++||+|+||+++|||+|.++ ++||+|+|||+|.|+|+| ++++++.++
T Consensus 85 ~~~~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~-~~Gl~R~reF~~~e~~~~~~~~e~a~~e 163 (264)
T cd00772 85 AGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRP-RFGFLRAREFIMKDGHSAHADAEEADEE 163 (264)
T ss_pred CCCCccCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCC-CCCcceeeEEEEeeeEEecCCHHHHHHH
Confidence 876 89999999999999999999999999999999999999999766 599999999999999999 677888889
Q ss_pred HHHHHHHHHHHHHHcC-CCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccC
Q 046808 413 IRAVLDLTEEILLQFG-FNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALG 491 (653)
Q Consensus 413 ~~e~l~~~~~il~~lG-l~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g 491 (653)
+.++++++.++++.|| +| +.+...+.+.+++|... +.|++++...|
T Consensus 164 ~~~~~~~~~~i~~~l~~lp-~~~~~~~~~d~~~g~~~--------------------------------~~d~e~~~p~~ 210 (264)
T cd00772 164 FLNMLSAYAEIARDLAAID-FIEGEADEGAKFAGASK--------------------------------SREFEALMEDG 210 (264)
T ss_pred HHHHHHHHHHHHHhcCCcc-EEEEEcCCCccccCCcC--------------------------------CEEEEEECCCC
Confidence 9999999999999999 75 55554544544455432 13444443334
Q ss_pred CcccccceE--EEecCCcccc--cEEECCCCCcccCEEEEecccCchHHHHHHHHHh
Q 046808 492 RKWQCSTIQ--VDFNLPQRFD--IVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEH 544 (653)
Q Consensus 492 ~~~~~~~i~--~d~~~~~r~d--~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~ 544 (653)
+..++.+.+ .|++. ++++ ++|.+.+|+...+++.++|+ +++|+|+|++|.
T Consensus 211 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~n~~gi--~~~R~l~aile~ 264 (264)
T cd00772 211 KAKQAETGHIFGEGFA-RAFDLKAKFLDKDGKEKFFEMGCWGI--GISRFIGAIIEQ 264 (264)
T ss_pred CEeEEEeeeeccCCch-hhcCCccEEECCCCCEEEEEeccccc--hHHHHHHHhhcC
Confidence 433332221 34443 6555 89999888888999998887 799999999873
No 39
>PLN02320 seryl-tRNA synthetase
Probab=100.00 E-value=1.2e-35 Score=319.75 Aligned_cols=265 Identities=18% Similarity=0.311 Sum_probs=215.6
Q ss_pred hhhchhHhhhcccCccccccc-ccCccee-cCcc-ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccc
Q 046808 253 AKRRDHRRLGQDLDLFSIQDE-AGGGLVF-WHPK-GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYR 329 (653)
Q Consensus 253 akk~~h~~l~~~l~l~~~~~~-~~~G~~~-~lP~-g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~ 329 (653)
..+++|++||++||||+|++. ..+|.++ |+|. ++.+.++|++++++.+.+.||++|.||.|.+.++|.++||++.+.
T Consensus 197 f~~rdH~eLg~~L~Lfdf~~aakvsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e 276 (502)
T PLN02320 197 FPIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGD 276 (502)
T ss_pred CCCcCHHHHHHHcCCccccchhhcCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccc
Confidence 457899999999999999631 1236665 3665 445779999999999999999999999999999999999988765
Q ss_pred c-ccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCC--C-CCCCcceeceeEEcceeeeeC
Q 046808 330 E-NMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELS--G-SLHGLFRVRGFTQDDAHIFCL 405 (653)
Q Consensus 330 ~-~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~--~-~~~GL~R~REF~q~d~~ifg~ 405 (653)
+ ++|++ ++++++|.||++.++..++.+.+.++++||+|++.+|+|||+|.+ + ..+||+|+|||+|.|+++||.
T Consensus 277 ~~~~y~i---e~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~ 353 (502)
T PLN02320 277 NTQVYSI---DGSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICR 353 (502)
T ss_pred cCceeEE---CCCceEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEEC
Confidence 5 67765 467899999988776667888888999999999999999999998 4 479999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEE
Q 046808 406 EDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLK 485 (653)
Q Consensus 406 ~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~ 485 (653)
++++.+++.++++++.++|+.|||+++.+.++++. +|.... .++|++
T Consensus 354 peqs~~e~e~ll~~~e~i~~~LgLpyrvv~l~tgD---Lg~~a~------------------------------kkyDiE 400 (502)
T PLN02320 354 PEESESFHEELIQIEEDLFTSLGLHFKTLDMATAD---LGAPAY------------------------------RKFDIE 400 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCc---cchhhh------------------------------heEEEE
Confidence 99999999999999999999999998999999876 443210 134444
Q ss_pred Ee----cccCCcccccceEEEecCCcccccEEECC--------CCC-----cccCEEEEecccCchHHHHHHHHHhhcC-
Q 046808 486 IE----DALGRKWQCSTIQVDFNLPQRFDIVYVDS--------NSE-----KKRPIMIHRAVLGSLERFFGVLIEHYAG- 547 (653)
Q Consensus 486 ~~----d~~g~~~~~~~i~~d~~~~~r~d~~~~~~--------~g~-----~~~p~~g~~~i~GgieRli~~L~e~~~~- 547 (653)
+| +.++...+|++| .|||. +|++++|.+. .|+ ...+|+...+ ...++|+|.||+|+|+.
T Consensus 401 vW~P~~~~y~EvsS~SNc-~DfQa-RRl~iryr~~~~~~~~~~~~k~~~~~~~~vHTLNgT-alAv~R~l~AILENyQ~~ 477 (502)
T PLN02320 401 AWMPGLGRYGEISSASNC-TDYQS-RRLGIRYRPSEPPQTNPKKGKGSLGPTKFVHTLNAT-ACAVPRMIVCLLENYQQE 477 (502)
T ss_pred EEecCCCcEEEEeeecch-hhHhh-hcccceeccccccccccccccccCCCcceeEecccc-hhHHHHHHHHHHHhCcCC
Confidence 43 356667789998 99998 9999999853 232 4566666532 12599999999999874
Q ss_pred ----CCCCCCCCc
Q 046808 548 ----DFPLWLSPI 556 (653)
Q Consensus 548 ----~~P~~lap~ 556 (653)
.+|..|.|+
T Consensus 478 dGsi~IP~vLrpy 490 (502)
T PLN02320 478 DGSVVIPEPLRPF 490 (502)
T ss_pred CCcEECChhhhhh
Confidence 577777775
No 40
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=9.4e-34 Score=306.00 Aligned_cols=302 Identities=20% Similarity=0.248 Sum_probs=225.1
Q ss_pred ccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceeccc-CCceEEeccCChHH
Q 046808 274 AGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNI-EDELYQLRPMNCPY 352 (653)
Q Consensus 274 ~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~-~~~~l~LrP~~~~~ 352 (653)
.++|++||+|..+..++.+++.++++|++|||.+|.||+||+.+++..+++.+ ..++||+|.|+ +|+.++|||+.|++
T Consensus 5 ~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~-~~~~~~~f~d~~~g~~l~LRpD~T~~ 83 (391)
T PRK12292 5 LPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAI-LDLRTFKLVDQLSGRTLGLRPDMTAQ 83 (391)
T ss_pred CCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCcc-chhhhEEEeecCCCCEEEECCCCcHH
Confidence 57999999999999999999999999999999999999999999998765433 36889999999 89999999999998
Q ss_pred HHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeE
Q 046808 353 HILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKY 432 (653)
Q Consensus 353 ~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~ 432 (653)
+.+++..... ..+.|+|+||+|+|||+|.++ +| |+|||+|+|+|+||.++..+| +|++.++.++++.||++++
T Consensus 84 iaR~~a~~~~-~~~~p~r~~y~g~vfR~~~~~--~g--r~ref~Q~g~EiiG~~~~~aD--aEvi~l~~~~l~~lgl~~~ 156 (391)
T PRK12292 84 IARIAATRLA-NRPGPLRLCYAGNVFRAQERG--LG--RSREFLQSGVELIGDAGLEAD--AEVILLLLEALKALGLPNF 156 (391)
T ss_pred HHHHHHHhcc-CCCCCeEEEeeceeeecCCCc--CC--CccchhccceEEeCCCCchHH--HHHHHHHHHHHHHcCCCCe
Confidence 8888876542 346899999999999999998 89 999999999999999999888 5999999999999999989
Q ss_pred EEEecCCcc-----cccCCchhHHH-HH-----------------------HHH--------------------------
Q 046808 433 EVNLSTKPE-----KAVGGDDIWEK-AT-----------------------SAL-------------------------- 457 (653)
Q Consensus 433 ~v~l~~~~~-----~~~g~~~~~~~-~~-----------------------~~l-------------------------- 457 (653)
.|++||..+ ..+|.++.+.. .. ..+
T Consensus 157 ~i~i~~~~i~~~il~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~~~~~~~~~ 236 (391)
T PRK12292 157 TLDLGHVGLFRALLEAAGLSEELEEVLRRALANKDYVALEELVLDLSEELRDALLALPRLRGGREVLEEARKLLPSLPIK 236 (391)
T ss_pred EEEeccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHhccChHHH
Confidence 999999653 22332211100 00 000
Q ss_pred ---------HHHHHhcCCc--eEEcCCC---cccc-cceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCccc
Q 046808 458 ---------RDALDDKGWD--YQIDEGG---GAFY-GPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKR 522 (653)
Q Consensus 458 ---------~~~l~~~g~~--~~~~~~~---~~~~-g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~ 522 (653)
.+.|...|++ +.++++. -.|| |..++... +..|.. ...|||||-.. ...| ...
T Consensus 237 ~~l~~L~~l~~~l~~~~~~~~i~~D~~lvrgl~YYtG~vFe~~~-~~~~~~---------i~~GGRYD~L~-~~fg-~~~ 304 (391)
T PRK12292 237 RALDELEALAEALEKYGYGIPLSLDLGLLRHLDYYTGIVFEGYV-DGVGNP---------IASGGRYDDLL-GRFG-RAR 304 (391)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEehhhccCCcCccceEEEEEE-CCCCCc---------ccCCcchhhHH-HHcC-CCC
Confidence 0111112211 2333321 1344 22222211 111110 14478999421 2223 467
Q ss_pred CEEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHH
Q 046808 523 PIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAE 601 (653)
Q Consensus 523 p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~ 601 (653)
|++|+ |+ |+||++.+ . . +....+.+++|++.+++....|.+++++||+.|++|+++. ..++++++++|+
T Consensus 305 pAvGf-ai--~ldrl~~~---~--~--~~~~~~~~~~v~~~~~~~~~~a~~~~~~Lr~~G~~~~~~~~~~~~~~~~~~a~ 374 (391)
T PRK12292 305 PATGF-SL--DLDRLLEL---Q--L--ELPVEARKDLVIAPDSEALAAALAAAQELRKKGEIVVLALPGRNFEDAREYAR 374 (391)
T ss_pred CCceE-Ee--eHHHHHhh---c--c--ccccccCCcEEEEeCcccHHHHHHHHHHHHHcCCEEEEecCCCChHHHHHHHh
Confidence 99997 66 69998863 1 1 1122345788888888888889999999999999999999 888999999999
Q ss_pred HcCC
Q 046808 602 KQKI 605 (653)
Q Consensus 602 ~~gi 605 (653)
+.|+
T Consensus 375 ~~~~ 378 (391)
T PRK12292 375 DRQI 378 (391)
T ss_pred hcCe
Confidence 9998
No 41
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=8.6e-34 Score=286.53 Aligned_cols=230 Identities=27% Similarity=0.411 Sum_probs=199.6
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccC----CceEEeccCChHHHHHHHHhh
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIE----DELYQLRPMNCPYHILVYQRK 360 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~----~~~l~LrP~~~~~~~~~~~~~ 360 (653)
|+.++++|++++++.+.++||++|.||+|++.++|..++|++.+.++||.+.|.+ ++.++|||++|++++++++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~ 80 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhcc
Confidence 5789999999999999999999999999999999999999999999999999887 899999999999999999999
Q ss_pred hcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCc
Q 046808 361 LQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKP 440 (653)
Q Consensus 361 ~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~ 440 (653)
..+++++|+|++|+|+|||+|.++ ++|+.|+|||+|.|+|+||.++++.++..++++++.++|+.||+ ++.+.+++.+
T Consensus 81 ~~~~~~lP~r~~~~g~~fR~E~~~-~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl-~~~i~~~~~~ 158 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPSG-RRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGL-PVRVVVADDP 158 (235)
T ss_pred CccchhcCeeeeeecccccCCCCC-CCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEccCh
Confidence 888889999999999999999998 47999999999999999999987777778999999999999999 6888888765
Q ss_pred ccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEeccc-CCcccccceEEEecCCcccccEEECCCCC
Q 046808 441 EKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDAL-GRKWQCSTIQVDFNLPQRFDIVYVDSNSE 519 (653)
Q Consensus 441 ~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~-g~~~~~~~i~~d~~~~~r~d~~~~~~~g~ 519 (653)
....+.. .+.++++++++|+++.+.. |+.+++++++.++....+....+.+.+|+
T Consensus 159 ~~~~~~~------------------------~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 214 (235)
T cd00670 159 FFGRGGK------------------------RGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDEDGG 214 (235)
T ss_pred hhccCCc------------------------cccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccEEEccCCC
Confidence 3222221 2344677889999999887 88888888888887766655555666677
Q ss_pred cccCEEEEecccCchHHHHHHHH
Q 046808 520 KKRPIMIHRAVLGSLERFFGVLI 542 (653)
Q Consensus 520 ~~~p~~g~~~i~GgieRli~~L~ 542 (653)
...|++++.+ ||+||++++|+
T Consensus 215 ~~~~~~~~~~--~~~eR~l~all 235 (235)
T cd00670 215 GRAHTGCGGA--GGEERLVLALL 235 (235)
T ss_pred ceeeEEEeCc--cHHHHHHHHHC
Confidence 7789998865 47999998874
No 42
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-34 Score=290.45 Aligned_cols=339 Identities=22% Similarity=0.339 Sum_probs=274.7
Q ss_pred cCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhh-cCcccccccccceecccC----CceEEeccCC
Q 046808 275 GGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKI-SGHLDFYRENMYDQMNIE----DELYQLRPMN 349 (653)
Q Consensus 275 ~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~-sg~~~~~~~~~y~~~d~~----~~~l~LrP~~ 349 (653)
.+|.|.+.|.++.++.+|.+++...+.+.|.+.+++|.|.+..++++ +.|.+.|..++=.+.-.+ .+.+++|||+
T Consensus 87 vsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAwVTr~G~seLeepiaiRPTS 166 (551)
T KOG4163|consen 87 VSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAWVTRAGNSELEEPIAIRPTS 166 (551)
T ss_pred ccceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCCcceEEEEecCCcccccceeeccCc
Confidence 48999999999999999999999999999999999999999998874 589888877765544333 4689999999
Q ss_pred hHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCchhHHHHHHHHHHHHHHHHHHc-
Q 046808 350 CPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRAVLDLTEEILLQF- 427 (653)
Q Consensus 350 ~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~~~~~d~~~e~l~~~~~il~~l- 427 (653)
+..+..+|+.|++|||+||+|+.|+.+|-|+|-.+ ...++|.|||...+.|. |.+++.+.++...++++|..++..|
T Consensus 167 ETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~-p~PFlRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~vy~ell 245 (551)
T KOG4163|consen 167 ETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKH-PQPFLRTREFLWQEGHTAFATPEEAEEEVLQILDLYARVYEELL 245 (551)
T ss_pred cceecHHHHHHHHhhccCchhhhhhhhheeeeccC-CCcchhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999986 38899999999888885 6777888888888999999999875
Q ss_pred CCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccccceE-EEecCC
Q 046808 428 GFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQ-VDFNLP 506 (653)
Q Consensus 428 Gl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~i~-~d~~~~ 506 (653)
-+|...= -.+..+++.|. +|.. .++ ..+...|+..|.+|-+ +.-+++
T Consensus 246 AiPVvkG-rKse~EkFaGg--------------------d~Tt----------tvE-a~i~~~GrgiQgaTSH~LGQNFS 293 (551)
T KOG4163|consen 246 AIPVVKG-RKSEKEKFAGG--------------------DYTT----------TVE-AFIPCSGRGIQGATSHHLGQNFS 293 (551)
T ss_pred ccccccC-ccchhhhccCC--------------------cceE----------EEe-eeeccccccccccchhhhhHHHH
Confidence 3321110 00111122221 1111 111 1234567777776643 455566
Q ss_pred cccccEEECC-CCCcccCEEEEecccCchHHHHHHHHHhhcC----CCCCCCCCceEEEEecC----------hhhHHHH
Q 046808 507 QRFDIVYVDS-NSEKKRPIMIHRAVLGSLERFFGVLIEHYAG----DFPLWLSPIQARVLPVT----------DTQLEYC 571 (653)
Q Consensus 507 ~r~d~~~~~~-~g~~~~p~~g~~~i~GgieRli~~L~e~~~~----~~P~~lap~~v~Vi~~~----------~~~~~~a 571 (653)
+.|++.|.++ +|.+....- ..+|-..|.|++++..|++ .+|+.++|.||+|+|++ +...++|
T Consensus 294 kmF~i~~ed~~~g~~~fv~Q---nSWg~sTRtiGvmiM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~ 370 (551)
T KOG4163|consen 294 KMFEIVFEDPGEGEKEFVWQ---NSWGLSTRTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDAC 370 (551)
T ss_pred HhhceeecCCCccchhheee---cccccccceeeEEEEEecCCcccccCCcccceEEEEEeccccccCchHHHHHHHHHH
Confidence 7889999887 455544333 3365578999999888865 79999999999999986 2457889
Q ss_pred HHHHHHHHhCCCeEEEeC--CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHhh
Q 046808 572 NEVIKKLKTNGIRAEICH--GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATEN 649 (653)
Q Consensus 572 ~~la~~Lr~~Gi~v~~d~--~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~ 649 (653)
..+...|..+|||++.|+ +.+.|.||..++..|+|+.+-||+++++++.|.+-.|+++++..|+++++...++++|+.
T Consensus 371 ~~v~~~L~~~giR~~~D~rDnytpGwKfnhwElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~~v~~~~l~~~v~elLe~ 450 (551)
T KOG4163|consen 371 SAVESRLLGAGIRAEADLRDNYTPGWKFNHWELKGVPLRIEIGPRDLASNQVVAVRRDTGEKKDVSLGDLEKTVKELLEK 450 (551)
T ss_pred HHHHHHHhccCceEeecccccCCCCccccceeecCceeEEEeccchhhhCeEEEEEccCCcccccCHHHHHHHHHHHHHH
Confidence 999999999999999999 689999999999999999999999999999999999999999999999999999998875
No 43
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.3e-33 Score=302.03 Aligned_cols=267 Identities=17% Similarity=0.202 Sum_probs=206.3
Q ss_pred chhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHH-HHhcCCeEEecCccCchhhhhhcCcccccccccce
Q 046808 256 RDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKS-HIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYD 334 (653)
Q Consensus 256 ~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~-~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~ 334 (653)
.+|.++++++|+++ +.+++|++.|+|.|+.++++|++++++. ..++||+++.+|.|.+.++|.++||++.|.++||.
T Consensus 195 ~~h~el~~~~glld--k~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~ 272 (517)
T PRK00960 195 GDPTEEAEKLGWVK--RFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYY 272 (517)
T ss_pred CCHHHHHHHCCCcc--ccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceE
Confidence 78999999999976 5779999999999999999999999986 67889999999999999999999999999999998
Q ss_pred eccc-----------------------------CCceEEeccCChHHHHHHHHhhhcccCCCCcEEEE-eeeeeecCCCC
Q 046808 335 QMNI-----------------------------EDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAE-LGTVYRYELSG 384 (653)
Q Consensus 335 ~~d~-----------------------------~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~-~g~~fR~E~~~ 384 (653)
+... .++.++|+||+||+++.+++++++++++||+|+++ +|+|||+|..
T Consensus 273 V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsG- 351 (517)
T PRK00960 273 VCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGG- 351 (517)
T ss_pred eeccccccccccchhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCC-
Confidence 7421 14578999999999999999999999999999999 7799999964
Q ss_pred CCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhc
Q 046808 385 SLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDK 464 (653)
Q Consensus 385 ~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~ 464 (653)
+.+||+|+|||+|.|+++||+++++.+++.+++..+..+++.|||+.+.+ +.+.|.-.-|..-+|
T Consensus 352 s~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~~e~i~~~LgLp~~r~-v~~DPFf~~~~k~~~-------------- 416 (517)
T PRK00960 352 GAHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDLEYWRE-VGDDPFYLEGRGLED-------------- 416 (517)
T ss_pred CCCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCceEE-ecccccccccCcccc--------------
Confidence 47999999999999999999999999999999999999999999963444 333331000000000
Q ss_pred CCceEEcCCCcccc-cceeeEEEecc----cCC--cccccceEEEecCCcccccEEECCCCCcccCEEEEecccCchHHH
Q 046808 465 GWDYQIDEGGGAFY-GPKIDLKIEDA----LGR--KWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERF 537 (653)
Q Consensus 465 g~~~~~~~~~~~~~-g~~~d~~~~d~----~g~--~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRl 537 (653)
+.-.|- ..++|++++-. -|. ..+..+.+.|++. +||++++. +| ...+++|+|+ |++|+
T Consensus 417 --------~d~~f~~~~tydiE~wmP~~~~~gk~~ev~S~S~hgd~fa-rrfnIk~~--~g--~~~hTnctG~--g~eR~ 481 (517)
T PRK00960 417 --------RGIEFPDVPKYEMELWLPYRGDERKWVAVTSANVHGTHFV-EGFNIKDY--KG--RKLWTGCTGY--GLERW 481 (517)
T ss_pred --------ccccCccccceeEEEEecCccCCCCEEEEEeeeeccchhh-HhhCcccC--CC--CeEeecceee--HHHHH
Confidence 000000 01344444321 122 2222223366665 99999752 33 3477888886 79999
Q ss_pred HHHHHHhhcC---CCCCCCCC
Q 046808 538 FGVLIEHYAG---DFPLWLSP 555 (653)
Q Consensus 538 i~~L~e~~~~---~~P~~lap 555 (653)
+.||+++||. .||..+.+
T Consensus 482 l~AlLe~hG~d~~~wPe~~r~ 502 (517)
T PRK00960 482 VIGFLAQKGFDPENWPEEIRK 502 (517)
T ss_pred HHHHHHhcCCCCCcCCHHHHH
Confidence 9999999984 67765544
No 44
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=4.5e-31 Score=284.02 Aligned_cols=300 Identities=15% Similarity=0.135 Sum_probs=213.7
Q ss_pred ccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceeccc-CCceEEeccCChHH
Q 046808 274 AGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNI-EDELYQLRPMNCPY 352 (653)
Q Consensus 274 ~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~-~~~~l~LrP~~~~~ 352 (653)
.++|++|++|..+..++.|++.+++++++|||++|.||+||+.++|.++.+.+. ++.||+|.|+ +|+.++|||+.|++
T Consensus 9 ~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~-~~~~y~f~D~~~g~~l~LRpD~T~~ 87 (392)
T PRK12421 9 LPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDL-KLQTFKLIDQLSGRLMGVRADITPQ 87 (392)
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccc-hhceEEEEcCCCCcEEEECCcCCHH
Confidence 578999999999999999999999999999999999999999999987644333 5789999998 69999999999998
Q ss_pred HHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeE
Q 046808 353 HILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKY 432 (653)
Q Consensus 353 ~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~ 432 (653)
+.+++.+... .+.|+|+||+|+|||++.++ +| |+|||+|+|+|+||.++..+| +|++.++.++++.||++++
T Consensus 88 iaR~~a~~~~--~~~p~R~~Y~g~VfR~~~~~--~g--r~rEf~Q~GvEiiG~~~~~aD--aEvi~l~~e~l~~lgi~~~ 159 (392)
T PRK12421 88 VARIDAHLLN--REGVARLCYAGSVLHTLPQG--LF--GSRTPLQLGAELYGHAGIEAD--LEIIRLMLGLLRNAGVPAL 159 (392)
T ss_pred HHHHHHhhcC--CCCceEEEEeeeEEEcCCCc--CC--CcCccceeceEEeCCCCchhH--HHHHHHHHHHHHHcCCCCe
Confidence 8888776532 26799999999999999987 89 999999999999999999999 6999999999999999989
Q ss_pred EEEecCCcc-----cccCCchhHHHHH---------HHHH----------------------------------------
Q 046808 433 EVNLSTKPE-----KAVGGDDIWEKAT---------SALR---------------------------------------- 458 (653)
Q Consensus 433 ~v~l~~~~~-----~~~g~~~~~~~~~---------~~l~---------------------------------------- 458 (653)
.+.+||... +.+|.++.+.... ..+.
T Consensus 160 ~l~ig~~~i~~~il~~l~l~~~~~~~l~~~l~kk~~~~l~~~~~~~~~~~~~~~~l~~L~~~~g~~~~l~~~~~~~~~~~ 239 (392)
T PRK12421 160 HLDLGHVGIFRRLAELAGLSPEEEEELFDLLQRKALPELAEVCQNLGVGSDLRRMFYALARLNGGLEALDRALSVLALQD 239 (392)
T ss_pred EEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHhhcccCC
Confidence 999999653 2233332111000 0000
Q ss_pred --------------HHHHhc--CCceEEcCCC--c-ccc-cceeeEEEecccCCcccccceEEEecCCcccccEEECCCC
Q 046808 459 --------------DALDDK--GWDYQIDEGG--G-AFY-GPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNS 518 (653)
Q Consensus 459 --------------~~l~~~--g~~~~~~~~~--~-~~~-g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g 518 (653)
+.|... +..+.+|.+. + +|| |..++.... ..+. + ...|||||-.. ...|
T Consensus 240 ~~~~~~l~~L~~l~~~l~~~~~~~~~~~DlslvrgldYYTG~vFe~~~~-~~~~-----~----i~~GGRYD~L~-~~fg 308 (392)
T PRK12421 240 AAIRQALDELKTLAAHLKNRWPELPVSIDLAELRGYHYHTGLVFAAYIP-GRGQ-----A----LARGGRYDGIG-EAFG 308 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEEEeeccccCCCCcCCCEEEEEEC-CCCC-----c----ccCCCCccchh-HhhC
Confidence 001111 2223333221 1 233 222222111 1110 1 13478998421 2233
Q ss_pred CcccCEEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeCCCCHHHHHH
Q 046808 519 EKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICHGERLPKLIR 598 (653)
Q Consensus 519 ~~~~p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~~~~~~kk~~ 598 (653)
...|++|+ |+ |+|||+.++.+. + .+ +++|++.++. ..+.+++++||+.|++|+++.... -.
T Consensus 309 -~~~pAvGf-ai--~lerL~~~l~~~-----~---~~-~~~~~~~~~~--~~~~~~a~~LR~~G~~~~~~~~~~----~~ 369 (392)
T PRK12421 309 -RARPATGF-SM--DLKELLALQFLE-----E---EA-GAILAPWGDD--PDLLAAIAELRQQGERVVQLLPGD----DG 369 (392)
T ss_pred -CCCCCceE-Ee--eHHHHHhhcccc-----c---CC-ceEEeecCCc--HHHHHHHHHHHhCCCEEEEeCCCc----ch
Confidence 35799997 66 799998766321 1 12 6777776644 347899999999999999987221 12
Q ss_pred HHHHcCCCEEEEECc
Q 046808 599 NAEKQKIPLMAVVGA 613 (653)
Q Consensus 599 ~A~~~gip~~iiiG~ 613 (653)
++ +.++...+++|.
T Consensus 370 ~~-~~~~~~~~~~~~ 383 (392)
T PRK12421 370 SS-EPGCDHRLVLQD 383 (392)
T ss_pred hH-HhCCCeEEEEEC
Confidence 24 557888888773
No 45
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=6.3e-32 Score=284.14 Aligned_cols=276 Identities=21% Similarity=0.337 Sum_probs=230.7
Q ss_pred cCCccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCccccc---ccccCcceecCccccHHHHHHHHHHHHH
Q 046808 223 DEKKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQ---DEAGGGLVFWHPKGSIVRHIIEDFWKKS 299 (653)
Q Consensus 223 ~~k~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~---~~~~~G~~~~lP~g~~l~~~I~~~~~~~ 299 (653)
++..+...|.+|..-.. ..+..+++|.+||+++|+.+|+ +.+|+|+++|.+.++++.++|.++..+.
T Consensus 118 de~~n~~vr~~g~~~~~----------~~~f~pk~H~~lge~l~~~Df~~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~ 187 (429)
T COG0172 118 DEDDNVEVRRWGEPPVF----------VFDFEPKDHVELGEKLGLLDFERAAKVSGSRFYFYKGKGARLERALIQFMLDL 187 (429)
T ss_pred CcccceEEEEEecCccc----------cccCCcchHHHHhhhcCcchhhhhcccCCCceEEEcCHHHHHHHHHHHHHHHH
Confidence 44556667777763110 1245678999999999999997 7889999999999999999999999999
Q ss_pred HHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeee
Q 046808 300 HIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYR 379 (653)
Q Consensus 300 ~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR 379 (653)
..++||+++.+|.|.+.+.+.++|.++.|.++||++.+ .+++|.||+|.+++.++.+.+....+||++++.+++|||
T Consensus 188 ~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~---~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR 264 (429)
T COG0172 188 HTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVED---PDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFR 264 (429)
T ss_pred HHHcCceEeeCceeecHHHhhccCCCCCCcccceEecC---CCEEEEecchhhhHHhhcccccccccCCeeeEEEChhhh
Confidence 99999999999999999999999999999999999843 389999999999999999999887889999999999999
Q ss_pred cCCCCC---CCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHH
Q 046808 380 YELSGS---LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSA 456 (653)
Q Consensus 380 ~E~~~~---~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~ 456 (653)
.|.... .+||+|+|||.+.++..|+.|+++.+++++++..++++++.|+||+..+.++++. +|..+
T Consensus 265 ~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLPyRvv~lctGD---lgf~a-------- 333 (429)
T COG0172 265 SEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELPYRVVNLCTGD---LGFSA-------- 333 (429)
T ss_pred cccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCCceEeeeccCC---cCCcc--------
Confidence 999752 7999999999999999999999999999999999999999999999999999875 33221
Q ss_pred HHHHHHhcCCceEEcCCCcccccceeeEEEe----cccCCcccccceEEEecCCcccccEEEC-CCCCcccCEEEEeccc
Q 046808 457 LRDALDDKGWDYQIDEGGGAFYGPKIDLKIE----DALGRKWQCSTIQVDFNLPQRFDIVYVD-SNSEKKRPIMIHRAVL 531 (653)
Q Consensus 457 l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~----d~~g~~~~~~~i~~d~~~~~r~d~~~~~-~~g~~~~p~~g~~~i~ 531 (653)
.+++|++++ +.+....+|++| .|||. +|++++|.. ..|+....|+.. |..
T Consensus 334 ----------------------~kkYDlEvWlP~q~~yrEisScSnc-~DfQa-RR~~~Ryr~~~~~k~~~vhTLN-Gsg 388 (429)
T COG0172 334 ----------------------AKKYDLEVWLPGQNKYREISSCSNC-TDFQA-RRLNIRYRDKEEGKREFVHTLN-GSG 388 (429)
T ss_pred ----------------------cCceeEEEEecCCCCceeeeeeecc-ccHHH-HHHhcccccccCCCcEEEEecc-chH
Confidence 123444443 346667889998 99998 999999965 456655544443 210
Q ss_pred CchHHHHHHHHHhhcC
Q 046808 532 GSLERFFGVLIEHYAG 547 (653)
Q Consensus 532 GgieRli~~L~e~~~~ 547 (653)
-.+.|++.|++|+|+.
T Consensus 389 lA~~R~l~AilENyq~ 404 (429)
T COG0172 389 LAVGRTLVAILENYQQ 404 (429)
T ss_pred HHHHHHHHHHHHcccC
Confidence 1489999999999863
No 46
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=99.97 E-value=1.2e-29 Score=270.48 Aligned_cols=262 Identities=18% Similarity=0.258 Sum_probs=208.9
Q ss_pred chhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHH-HHHhcCCeEEecCccCchhhhhhcCcccccccccce
Q 046808 256 RDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKK-SHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYD 334 (653)
Q Consensus 256 ~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~-~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~ 334 (653)
++|.++++++|+++ +.+++|++.|.|.|+.|+++|++++.+ .+.+.||+++.+|.|.+.+++.++||++.|.++||.
T Consensus 195 ~~h~el~~k~glid--k~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~ 272 (520)
T TIGR00415 195 GDPTDEAEKLGWVK--KFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYY 272 (520)
T ss_pred CCHHHHHHHCCCee--EEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheE
Confidence 78999999999875 678999999999999999999999975 557789999999999999999999999999999997
Q ss_pred eccc-----------------------------CCceEEeccCChHHHHHHHHhhhcccCCCCcEEEE-eeeeeecCCCC
Q 046808 335 QMNI-----------------------------EDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAE-LGTVYRYELSG 384 (653)
Q Consensus 335 ~~d~-----------------------------~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~-~g~~fR~E~~~ 384 (653)
+... ++..++|+||+|.+++.++++++.++++||+++++ +++|||+|...
T Consensus 273 Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGs 352 (520)
T TIGR00415 273 CCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGG 352 (520)
T ss_pred EecCCCCcchhhccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCC
Confidence 7311 23479999999999999999999999999999999 56899999986
Q ss_pred CCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhc
Q 046808 385 SLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDK 464 (653)
Q Consensus 385 ~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~ 464 (653)
.+||+|+|||.|.|++.+|+++++.+.+.++++.+.++++.||| +|.+..++.|.-..|....|.
T Consensus 353 -trGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~~~l~~L~L-pyrv~~adDPFf~~g~k~~~~------------- 417 (520)
T TIGR00415 353 -AKGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDL-EWWTEVGDDPFYLEGRKKEDR------------- 417 (520)
T ss_pred -CCCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCC-CeEEeecCCcccccccCcccc-------------
Confidence 49999999999999999999999999999999999999999999 466655555521011110010
Q ss_pred CCceEEcCCCccccc-ceeeEEEec------ccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecccCchHHH
Q 046808 465 GWDYQIDEGGGAFYG-PKIDLKIED------ALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERF 537 (653)
Q Consensus 465 g~~~~~~~~~~~~~g-~~~d~~~~d------~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRl 537 (653)
.-.|.+ .|+|+.++- .-|+..+.+|+ |.-+++.+||++ +|+...++.+|+|+ |++|+
T Consensus 418 ---------dl~F~~a~KyDlevwiP~~~~~~~g~AlqS~n~-Hg~hF~k~F~I~----~~~~~~a~ttC~G~--gleR~ 481 (520)
T TIGR00415 418 ---------GIEFPDVPKYEMRLSLPGIEDERKGVAVTSANV-HGTHFIEGFRIK----DAKGLNIWTGCTGI--GISRW 481 (520)
T ss_pred ---------cccCcccceEEEEEEEccccCCCCCcEEEEeec-hhcccccccCcc----cCCCCeEEEeeeec--cHHHH
Confidence 001111 244444321 12444455555 455677888886 56677899999996 69999
Q ss_pred HHHHHHhhcC---CCC
Q 046808 538 FGVLIEHYAG---DFP 550 (653)
Q Consensus 538 i~~L~e~~~~---~~P 550 (653)
+++|+.+||. .||
T Consensus 482 i~Ali~~HG~d~~~Wp 497 (520)
T TIGR00415 482 IVGFLAQKGFEFDDWH 497 (520)
T ss_pred HHHHHHHhCCChhhCC
Confidence 9999999986 466
No 47
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.3e-30 Score=265.77 Aligned_cols=368 Identities=22% Similarity=0.302 Sum_probs=248.2
Q ss_pred CcceecCccccHHHHHHHHHHHHHHH-hcCCeEEecCccCchhhhhhcCccccccccccee-------------------
Q 046808 276 GGLVFWHPKGSIVRHIIEDFWKKSHI-EHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQ------------------- 335 (653)
Q Consensus 276 ~G~~~~lP~g~~l~~~I~~~~~~~~~-~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~------------------- 335 (653)
+|+|||.|.|..+..+|.+.||+.|. .-+.-+|+.|.|.|.+|+++|||.|.|.+-|-+-
T Consensus 36 sGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~VlkaSGHVdkF~D~mvkD~ktGecfRADHLvk~~~~r 115 (599)
T KOG2298|consen 36 SGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKASGHVDKFADWMVKDEKTGECFRADHLVKDAEER 115 (599)
T ss_pred ccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhcccchhhhhHHHhcCccccceehhhHHHHHHHHh
Confidence 69999999999999999999999994 6789999999999999999999999886555310
Q ss_pred -------------------------------------c-----------------------ccCCceEEeccCChHHHHH
Q 046808 336 -------------------------------------M-----------------------NIEDELYQLRPMNCPYHIL 355 (653)
Q Consensus 336 -------------------------------------~-----------------------d~~~~~l~LrP~~~~~~~~ 355 (653)
. -.++-.-+|||+|.++++.
T Consensus 116 l~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETAQG~Fl 195 (599)
T KOG2298|consen 116 LKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETAQGQFL 195 (599)
T ss_pred hhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCccccccccc
Confidence 0 0234467899999999988
Q ss_pred HHHhhhc-ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhH-HHHHHHHHHHH-------------
Q 046808 356 VYQRKLQ-SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQI-KDEIRAVLDLT------------- 420 (653)
Q Consensus 356 ~~~~~~~-s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~-~d~~~e~l~~~------------- 420 (653)
.|++.+. ....+|+--+|+|+.||+|.++ +.||+|+|||+|+++|=|..|... -.-+.++...-
T Consensus 196 NFkrlle~N~~KlPFA~AqiG~~fRNEISp-RsGLlRvrEF~maEIEHFvdP~~K~h~kF~~V~~~~l~l~~~~~q~~g~ 274 (599)
T KOG2298|consen 196 NFKRLLEFNQGKLPFASAQIGKSFRNEISP-RSGLLRVREFTMAEIEHFVDPLLKSHPKFSLVAAEKLRLFPRDKQLSGQ 274 (599)
T ss_pred cHHHHHHhcCCCCcchHHHhchHhhhccCc-ccCceeEEEeehHHhhccCCCCCCCChhhhhhhhhhhhhcchhhhhccc
Confidence 8877643 3458999999999999999999 799999999999999999888431 11112222111
Q ss_pred ----------------------------HHHHHHcCCCeEEEEecCCccc--ccCCchhHHHHHHHHHHHHHhcCCc---
Q 046808 421 ----------------------------EEILLQFGFNKYEVNLSTKPEK--AVGGDDIWEKATSALRDALDDKGWD--- 467 (653)
Q Consensus 421 ----------------------------~~il~~lGl~~~~v~l~~~~~~--~~g~~~~~~~~~~~l~~~l~~~g~~--- 467 (653)
..++.++||..-.+++...-.+ +.-.-++|+.. ....+||-
T Consensus 275 ~a~~~~lgEaV~kg~V~netlGyfi~Ri~~fL~~lGid~~rlRFRqH~~nEMAHYA~DCWDaE------i~tSYGWIEcV 348 (599)
T KOG2298|consen 275 SAQKVALGEAVAKGTVNNETLGYFIGRIYLFLNKLGIDKERLRFRQHMANEMAHYAFDCWDAE------IKTSYGWIECV 348 (599)
T ss_pred hhhHhHHHHHHHhhccccchhHHHHHHHHHHHHHhCcchhhcchHHHhhhhhhhhhccccchh------hhhccCcEEEe
Confidence 1122222222111211110000 00011344421 22233331
Q ss_pred -------eEEcC-CC---------cccccceee--EEE---ecccCCccc---------------ccceEEEecCC--cc
Q 046808 468 -------YQIDE-GG---------GAFYGPKID--LKI---EDALGRKWQ---------------CSTIQVDFNLP--QR 508 (653)
Q Consensus 468 -------~~~~~-~~---------~~~~g~~~d--~~~---~d~~g~~~~---------------~~~i~~d~~~~--~r 508 (653)
|++.. .+ ..+-.|+.. ..+ ...+|..+. ..-++.-.+++ +.
T Consensus 349 G~ADRs~yDL~~Hs~~t~~~Lv~~~kl~ePkeve~~~i~~~kk~~g~~fk~~ak~v~~~l~~~s~~e~~~~~~~L~~~g~ 428 (599)
T KOG2298|consen 349 GCADRAAYDLSTHSRASKVWLVAELRLREPKEVEFAVIPPNKKELGCAFKKDAKGVNETLIFPSGKELIETLENLGDHGL 428 (599)
T ss_pred eccchhheeeecCccccCCceeehhhcCCcceEEEEEeccchhhcchhhhhcccchhHHhhcCCHHHHHHHHHHhhcCCc
Confidence 11110 00 001112110 000 001111110 00000000000 11
Q ss_pred cccEEE---------C-----CCCCcccCEEEEecccCchHHHHHHHHHhh-c---------CCCCCCCCCceEEEEecC
Q 046808 509 FDIVYV---------D-----SNSEKKRPIMIHRAVLGSLERFFGVLIEHY-A---------GDFPLWLSPIQARVLPVT 564 (653)
Q Consensus 509 ~d~~~~---------~-----~~g~~~~p~~g~~~i~GgieRli~~L~e~~-~---------~~~P~~lap~~v~Vi~~~ 564 (653)
|.+... . ..-..-+|.++..+ + |+.|++.+|.|+. . ..+|+.+||+++.|.|++
T Consensus 429 ~~~~v~~l~k~~v~i~~~~k~~hV~e~~P~VIEPS-f-GiGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls 506 (599)
T KOG2298|consen 429 LHMYVVNLSKLHVRIKRKTKVPHVREVNPDVIEPS-F-GIGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLS 506 (599)
T ss_pred EEEEEEecccceeeeeeeeeeeeEEeecCCccccc-c-hhhHHHHHHHhhhhccCcccccceeccCccccceEEEEEecc
Confidence 110000 0 00113457777776 4 5999999999974 1 169999999999999987
Q ss_pred --hhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHH
Q 046808 565 --DTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFIS 641 (653)
Q Consensus 565 --~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~ 641 (653)
++..+.+..|.++|++.||.+.+|+ +.++|+++...|++||||-|.|..+.+++++||+|+|++..|..+++++++.
T Consensus 507 ~n~ef~pv~~~ls~~L~~~gis~kvdds~~SIGrrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS~~QvR~~i~e~~s 586 (599)
T KOG2298|consen 507 PNLEFRPVCQGLSNELTENGISVKVDDSSSSIGRRYARTDELGIPFGVTVDFDTLKNGTVTLRERDSTMQVRMHISKLKS 586 (599)
T ss_pred CchhHHHHHHHHHHHHHhCCCeEEecCCCCcHhhhhhccccccCceEEEEchhhhcCceEEEeecccHHHHHhhHHHHHH
Confidence 5778999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 046808 642 RIKSATENRTT 652 (653)
Q Consensus 642 ~i~~~~~~~~~ 652 (653)
.|.++++++.+
T Consensus 587 ~v~~~~~g~~~ 597 (599)
T KOG2298|consen 587 FLIKYISGAKN 597 (599)
T ss_pred HHHHHhccccc
Confidence 99999987653
No 48
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.6e-30 Score=266.89 Aligned_cols=289 Identities=19% Similarity=0.304 Sum_probs=234.6
Q ss_pred ecCCccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCccccc---ccccCcceecCccccHHHHHHHHHHHH
Q 046808 222 GDEKKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQ---DEAGGGLVFWHPKGSIVRHIIEDFWKK 298 (653)
Q Consensus 222 ~~~k~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~---~~~~~G~~~~lP~g~~l~~~I~~~~~~ 298 (653)
+++..+.+.|+++..- .+++...|.+|++.+|+++.+ ..+|...|++.+.++.+.++|.++..+
T Consensus 131 ~ee~~~~v~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~ 197 (455)
T KOG2509|consen 131 NEEQANVVQRVGGPLE-------------FEFKLSHHDELVRALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALD 197 (455)
T ss_pred chhhhhHHHHhcCCcc-------------cccccccHHHHHHhcccccccchhhcccccceEEcCHHHHHHHHHHHHHHH
Confidence 4555666767766531 223346789999999987776 567777899999999999999999999
Q ss_pred HHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeee
Q 046808 299 SHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVY 378 (653)
Q Consensus 299 ~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~f 378 (653)
.+.+.||.+|.||.|.+.+|+.++|....+++++|...|.+ .+.+|..|++.+++.++.++.....+||+|+..+++||
T Consensus 198 ~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~-~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~Cf 276 (455)
T KOG2509|consen 198 FLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGG-DEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCF 276 (455)
T ss_pred HHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEeecCC-ccceeEeeccchhhhhhcccccccccCceeeeehhHHH
Confidence 99999999999999999999999999988999998877665 67899999999999999888777789999999999999
Q ss_pred ecCCCC---CCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHH
Q 046808 379 RYELSG---SLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATS 455 (653)
Q Consensus 379 R~E~~~---~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~ 455 (653)
|.|... ..+||||+|||++.|+.+++.|+.+++++.|++....++++.|||+...+.+-+.. +|....
T Consensus 277 R~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qsLgip~rvl~m~S~e---Lg~aAa------ 347 (455)
T KOG2509|consen 277 RAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQSLGLPYRVLNMPSGE---LGAAAA------ 347 (455)
T ss_pred HHHhhhcccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHHhCCceeEecCCchh---hCcHHH------
Confidence 999943 27999999999999999999999999999999999999999999987777776654 443320
Q ss_pred HHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccccceEEEecCCcccccEEE---CCCCCcccCEEEEecccC
Q 046808 456 ALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYV---DSNSEKKRPIMIHRAVLG 532 (653)
Q Consensus 456 ~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~---~~~g~~~~p~~g~~~i~G 532 (653)
. .|++.. +|-| ...+|...+||+| +|||. ||++++|. ..+|+.+..||.+.. ..
T Consensus 348 ------k----KyDiEA---WmPg-------rg~ygEl~ScSNC-TDyQS-RRL~IRy~~~k~~~~~~~yvHtLN~T-ac 404 (455)
T KOG2509|consen 348 ------K----KYDIEA---WMPG-------RGAYGELVSCSNC-TDYQS-RRLGIRYGQKKTNDGEKKYVHTLNGT-AC 404 (455)
T ss_pred ------h----hcchhh---hcCc-------ccccccccccccc-hhHHH-hhhhhhcccccccCCccceeeecchh-hH
Confidence 0 011110 0001 1246778899999 99998 99999997 467778888887754 44
Q ss_pred chHHHHHHHHHhhcC----CCCCCCCCc
Q 046808 533 SLERFFGVLIEHYAG----DFPLWLSPI 556 (653)
Q Consensus 533 gieRli~~L~e~~~~----~~P~~lap~ 556 (653)
.++|+|.+|+|+|+. ..|..|.|+
T Consensus 405 A~~R~l~aiLEnyQ~edGi~VPe~Lr~y 432 (455)
T KOG2509|consen 405 ATPRALCAILENYQTEDGIEVPEVLRPY 432 (455)
T ss_pred hhhHHHHHhHhhccCCCCccCCHhHHhh
Confidence 699999999999863 577776664
No 49
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.96 E-value=3.5e-29 Score=240.62 Aligned_cols=152 Identities=33% Similarity=0.680 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHH-hcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc-cC
Q 046808 288 VRHIIEDFWKKSHI-EHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS-YR 365 (653)
Q Consensus 288 l~~~I~~~~~~~~~-~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s-~~ 365 (653)
|+++|++++++.+. ++||++|.||+|.+.++|.++||++.+.++||.+.|.++++++||||+|++++.++++...+ ++
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence 68999999999999 99999999999999999999999999999999999999999999999999999999999988 99
Q ss_pred CCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCc
Q 046808 366 DFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKP 440 (653)
Q Consensus 366 ~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~ 440 (653)
+||++++++|+|||+|.++ .+||+|+|||+|.|+++||.++++.+++.++++.+.++++.|||.++.+..++.+
T Consensus 81 ~LP~~~~~~g~~fR~E~~~-~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~ 154 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEARP-TRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIVLSSSG 154 (173)
T ss_dssp GSSEEEEEEEEEEBSSSSS-BSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETC
T ss_pred cCCeEEeeccccccccccc-ccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCC
Confidence 9999999999999999754 5999999999999999999999999999999999999999999966777777664
No 50
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.95 E-value=1.3e-26 Score=237.48 Aligned_cols=236 Identities=23% Similarity=0.324 Sum_probs=177.8
Q ss_pred cHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccC
Q 046808 286 SIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYR 365 (653)
Q Consensus 286 ~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~ 365 (653)
+.++++|++.+++++.++||++|.||.+++.++|..++ ++...++||+|.|.+|+.++|||+.|+++++++.....+ .
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~-~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~-~ 79 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS-GDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLS-L 79 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc-cccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCcc-C
Confidence 57899999999999999999999999999999998876 444578999999999999999999999999988876544 5
Q ss_pred CCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcc----
Q 046808 366 DFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPE---- 441 (653)
Q Consensus 366 ~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~---- 441 (653)
++|+|+||+|+|||+|.++ .| |.|||+|+|+|+||.++..+| +|++.++.++++.||++++.+.+|+..+
T Consensus 80 ~~p~k~~y~g~vfR~e~~~--~g--~~re~~Q~g~Eiig~~~~~~d--aE~i~l~~~~l~~lg~~~~~i~l~~~~i~~~l 153 (261)
T cd00773 80 PLPLKLYYIGPVFRYERPQ--KG--RYREFYQVGVEIIGSDSPLAD--AEVIALAVEILEALGLKDFQIKINHRGILDGI 153 (261)
T ss_pred CCCeEEEEEcCEEecCCCC--CC--CccceEEeceeeeCCCChHHH--HHHHHHHHHHHHHcCCCceEEEECCHHHHHHH
Confidence 7999999999999999987 78 999999999999999888888 6999999999999999999999999764
Q ss_pred -cccCCchhHHH---------HH---HHHHHHHHhcCC--ceEEcCCC---ccccc-ceeeEEEecccCCcccccceEEE
Q 046808 442 -KAVGGDDIWEK---------AT---SALRDALDDKGW--DYQIDEGG---GAFYG-PKIDLKIEDALGRKWQCSTIQVD 502 (653)
Q Consensus 442 -~~~g~~~~~~~---------~~---~~l~~~l~~~g~--~~~~~~~~---~~~~g-~~~d~~~~d~~g~~~~~~~i~~d 502 (653)
...+.++.+.. +. ..+.+.|...|. .+.++.+. -.||+ ..++.... ..+... .|
T Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~l~~l~~l~~~l~~~~~~~~i~~d~~~~r~~~YYtG~vF~~~~~-~~~~~~---~i--- 226 (261)
T cd00773 154 AGLLEDREEYIERLIDKLDKEALAHLEKLLDYLEALGVDIKYSIDLSLVRGLDYYTGIVFEAVAD-GLGAQG---SI--- 226 (261)
T ss_pred hhccCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCceEEEcCccccCCcccCceEEEEEEC-CCCccC---eE---
Confidence 23343322211 11 223445556664 35666552 25663 33333222 111111 11
Q ss_pred ecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHH
Q 046808 503 FNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVL 541 (653)
Q Consensus 503 ~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L 541 (653)
..|||||-.. ...++...|++|+ ++ ++||++.+|
T Consensus 227 -~~GGRYD~L~-~~f~~~~~~avGf-a~--~~d~l~~~~ 260 (261)
T cd00773 227 -AGGGRYDGLL-EEFGGEDVPAVGF-AI--GLERLLLAL 260 (261)
T ss_pred -eeccCHHHHH-HHhCCCCCCeEEE-EE--cHHHHHHhh
Confidence 4579999421 1223356799996 66 699988765
No 51
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=99.94 E-value=2.3e-26 Score=241.66 Aligned_cols=153 Identities=22% Similarity=0.321 Sum_probs=140.6
Q ss_pred eecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHH
Q 046808 279 VFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQ 358 (653)
Q Consensus 279 ~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~ 358 (653)
+|++|.++.+++.|++.+++.++++||++|.||+||+.++|..+++ + ..++||+|.|.+|+.++|||+.|+++.+++.
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~-~-~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~ 78 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG-I-LNEDLFKLFDSLGRVLGLRPDMTTPIARAVS 78 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC-c-chhceEEEECCCCCEEeecCcCcHHHHHHHH
Confidence 5899999999999999999999999999999999999999998877 4 4789999999999999999988888888877
Q ss_pred hhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecC
Q 046808 359 RKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLST 438 (653)
Q Consensus 359 ~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~ 438 (653)
.... ..++|+|+||+|+|||+|.++ .| |.|||+|+|+|+||.+++.+| +|++.++.++++.||+.++.+.+++
T Consensus 79 ~~~~-~~~~p~r~~y~g~VfR~~~~~--~g--r~re~~Q~g~Eiig~~~~~ad--aEvi~l~~~~l~~lg~~~~~i~l~~ 151 (314)
T TIGR00443 79 TRLR-DRPLPLRLCYAGNVFRTNESG--AG--RSREFTQAGVELIGAGGPAAD--AEVIALLIEALKALGLKDFKIELGH 151 (314)
T ss_pred Hhcc-cCCCCeEEEEeceEeecCCCc--CC--CcccccccceEEeCCCCchhH--HHHHHHHHHHHHHcCCCCeEEEeCc
Confidence 6543 456899999999999999988 78 999999999999999999888 6999999999999999999999998
Q ss_pred Cc
Q 046808 439 KP 440 (653)
Q Consensus 439 ~~ 440 (653)
..
T Consensus 152 ~~ 153 (314)
T TIGR00443 152 VG 153 (314)
T ss_pred HH
Confidence 65
No 52
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.94 E-value=9.2e-27 Score=236.80 Aligned_cols=153 Identities=25% Similarity=0.379 Sum_probs=135.5
Q ss_pred cCcceecCccccHHHHHHHHHHHHHHHhcC--CeEEecCccCchhhhhhc-CcccccccccceecccCCceEEeccCChH
Q 046808 275 GGGLVFWHPKGSIVRHIIEDFWKKSHIEHD--YDLLYTPHVAKADLWKIS-GHLDFYRENMYDQMNIEDELYQLRPMNCP 351 (653)
Q Consensus 275 ~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G--~~~I~tP~le~~~l~~~s-g~~~~~~~~~y~~~d~~~~~l~LrP~~~~ 351 (653)
.+|++||+|.|++++++|+++|++.+.++| |++|.||++++.++|..+ |++ |.+++.++|||++|+
T Consensus 21 ~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~-----------d~~~~~~~Lrp~~~~ 89 (254)
T cd00774 21 VAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPV-----------ESGGNLGYLRPETAQ 89 (254)
T ss_pred hhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeeccc-----------CCCCcccccCCcccc
Confidence 589999999999999999999999999996 999999999999777654 333 234568999999999
Q ss_pred HHHHHHHhhhcccC-CCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 352 YHILVYQRKLQSYR-DFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 352 ~~~~~~~~~~~s~~-~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
.+...+++...+++ +||+|+||+|+|||+|.+| +.||+|+|||+|+|+|+||+++++.+++..+++.+.++|.++|++
T Consensus 90 ~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~-~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~G~~ 168 (254)
T cd00774 90 GIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISP-RNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQS 168 (254)
T ss_pred hHHHHHHHHHHHhCCCCCchhhhhchhhccccCc-ccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHcCCC
Confidence 99888888777664 9999999999999999998 599999999999999999999999999999999999999999997
Q ss_pred eEEEEecCC
Q 046808 431 KYEVNLSTK 439 (653)
Q Consensus 431 ~~~v~l~~~ 439 (653)
.-.+++...
T Consensus 169 ~~~~r~~~~ 177 (254)
T cd00774 169 PENLRLTDH 177 (254)
T ss_pred ccceEEEec
Confidence 655555443
No 53
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.94 E-value=1.6e-25 Score=230.04 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=130.3
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHH
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPY 352 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~ 352 (653)
..++|++|++|..+.+++.|++.+++++.+|||++|.||++|+.+++.. ...++||+|.|++|+.++|||+.|++
T Consensus 6 ~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~-----~~~~~~y~~~D~~g~~l~LRpD~T~~ 80 (281)
T PRK12293 6 EIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI-----ADEKELIRFSDEKNHQISLRADSTLD 80 (281)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc-----cchhceEEEECCCCCEEEECCcCCHH
Confidence 4589999999999999999999999999999999999999999999833 22589999999999999999999988
Q ss_pred HHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeE
Q 046808 353 HILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKY 432 (653)
Q Consensus 353 ~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~ 432 (653)
+++++..+.. ...+|+|+||+|+|||+|. |||+|+|+|++|.++. +|++.++.++|+++|++ +
T Consensus 81 iaR~~a~~~~-~~~~p~r~~Y~g~vfR~~~----------rEf~Q~GvEliG~~~~-----~Evi~la~~~l~~lgl~-~ 143 (281)
T PRK12293 81 VVRIVTKRLG-RSTEHKKWFYIQPVFRYPS----------NEIYQIGAELIGEEDL-----SEILNIAAEIFEELELE-P 143 (281)
T ss_pred HHHHHHHhcc-cCCCceeEEEeccEEecCC----------CcccccCeEeeCCCCH-----HHHHHHHHHHHHHcCCC-C
Confidence 8888876542 2368999999999999973 7999999999999875 38999999999999996 5
Q ss_pred EEEecCCcc
Q 046808 433 EVNLSTKPE 441 (653)
Q Consensus 433 ~v~l~~~~~ 441 (653)
.|++|++.+
T Consensus 144 ~i~ig~~~i 152 (281)
T PRK12293 144 ILQISNIKI 152 (281)
T ss_pred EEEECCHHH
Confidence 799999763
No 54
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=99.91 E-value=1.2e-23 Score=221.50 Aligned_cols=154 Identities=26% Similarity=0.359 Sum_probs=133.1
Q ss_pred cceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHH
Q 046808 277 GLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILV 356 (653)
Q Consensus 277 G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~ 356 (653)
|++||+|..++.++.|++.+++++++|||++|.||++|+.+++...++.+ .+++|+|.|++|+.++|||..++++.++
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~--~~~~~~~~D~~G~~l~LR~D~T~~iaR~ 78 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGED--SDNMYRFLDRSGRVLALRPDLTVPIARY 78 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTT--GGCSEEEECTTSSEEEE-SSSHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccc--hhhhEEEEecCCcEeccCCCCcHHHHHH
Confidence 89999999999999999999999999999999999999999999876555 3589999999999999999999998888
Q ss_pred HHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHH-HcCCCeEEEE
Q 046808 357 YQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILL-QFGFNKYEVN 435 (653)
Q Consensus 357 ~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~-~lGl~~~~v~ 435 (653)
++.... ...|.|+||+|+|||++.++ .| |.|||+|+++|+||.++..+| +|++.++.++++ .+|+.++.+.
T Consensus 79 ~a~~~~--~~~~~r~~y~g~vfR~~~~~--~g--~~re~~Q~g~Eiig~~~~~~d--aEvi~l~~e~l~~~l~~~~~~i~ 150 (311)
T PF13393_consen 79 VARNLN--LPRPKRYYYIGPVFRYERPG--KG--RPREFYQCGFEIIGSSSLEAD--AEVIKLADEILDRELGLENFTIR 150 (311)
T ss_dssp HHHCCG--SSSSEEEEEEEEEEEEETTT--TT--BESEEEEEEEEEESSSSHHHH--HHHHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHhcC--cCCCceEEEEcceeeccccC--CC--CCceeEEEEEEEECCCCHHHH--HHHHHHHHHHHHhhcCCCCcEEE
Confidence 887642 57899999999999999987 78 999999999999999988888 699999999997 9999999999
Q ss_pred ecCCc
Q 046808 436 LSTKP 440 (653)
Q Consensus 436 l~~~~ 440 (653)
+||..
T Consensus 151 i~h~~ 155 (311)
T PF13393_consen 151 INHTG 155 (311)
T ss_dssp EEEHH
T ss_pred EcCch
Confidence 99865
No 55
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.90 E-value=9.6e-23 Score=217.26 Aligned_cols=140 Identities=22% Similarity=0.160 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCC
Q 046808 288 VRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDF 367 (653)
Q Consensus 288 l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~l 367 (653)
-.+.|.+.++++|++|||.+|.||+||+.+++....+.+. .++||+|.|++|+.++|||..|+++.+++..+ ....
T Consensus 6 ~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~-~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~---~~~~ 81 (373)
T PRK12295 6 ASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDI-RRRIFVTSDENGEELCLRPDFTIPVCRRHIAT---AGGE 81 (373)
T ss_pred hHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchh-hcceEEEECCCCCEEeeCCCCcHHHHHHHHHc---CCCC
Confidence 3568999999999999999999999999999987644443 67899999999999999998888888776543 1367
Q ss_pred CcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCch-hHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCc
Q 046808 368 PIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLED-QIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKP 440 (653)
Q Consensus 368 P~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~-~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~ 440 (653)
|+|+||+|+|||+| +| |.|||+|+|+|+||.++ ..+| +|++.++.++++.+|++++.+.+||..
T Consensus 82 p~R~~Y~g~VfR~~-----~g--r~rEf~Q~GvEiiG~~~~~~aD--aEvi~l~~~~L~~lgl~~~~i~ig~~~ 146 (373)
T PRK12295 82 PARYAYLGEVFRQR-----RD--RASEFLQAGIESFGRADPAAAD--AEVLALALEALAALGPGDLEVRLGDVG 146 (373)
T ss_pred CeEEEEEccEEECC-----CC--CCCcceEeeEEeeCCCCCccch--HHHHHHHHHHHHHcCCCceEEEeCCHH
Confidence 99999999999998 35 99999999999999754 5677 599999999999999999999999865
No 56
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=99.87 E-value=1.6e-21 Score=204.09 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=141.8
Q ss_pred ccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHH
Q 046808 274 AGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYH 353 (653)
Q Consensus 274 ~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~ 353 (653)
.+.|++|.+|.+++....|.+.+++.|.+|||+.|.||++|+.+.+....+.+ .+..+|++.|..|+.+||||+.|+++
T Consensus 5 lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~-l~~~~f~l~d~~g~~l~LRpD~T~pV 83 (390)
T COG3705 5 LPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGED-LRRRLFKLEDETGGRLGLRPDFTIPV 83 (390)
T ss_pred CCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchh-hhhhheEEecCCCCeEEecccccHHH
Confidence 46899999999999999999999999999999999999999999998763332 26889999999999999999999999
Q ss_pred HHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEE
Q 046808 354 ILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYE 433 (653)
Q Consensus 354 ~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~ 433 (653)
++++.....+ .|.|++|.|+|||.. .+ +.| |..||+|.++|++|.++..+| +|++.++..+++.+|+++++
T Consensus 84 aR~~~~~~~~---~P~Rl~Y~G~Vfr~~-~~-~~g--~~~Ef~QaGiEllG~~~~~AD--aEvi~la~~~L~~~gl~~~~ 154 (390)
T COG3705 84 ARIHATLLAG---TPLRLSYAGKVFRAR-EG-RHG--RRAEFLQAGIELLGDDSAAAD--AEVIALALAALKALGLADLK 154 (390)
T ss_pred HHHHHHhcCC---CCceeeecchhhhcc-hh-ccC--cccchhhhhhHHhCCCcchhh--HHHHHHHHHHHHHcCCcCeE
Confidence 9988876543 899999999999988 44 478 888999999999999988999 59999999999999999999
Q ss_pred EEecCCc
Q 046808 434 VNLSTKP 440 (653)
Q Consensus 434 v~l~~~~ 440 (653)
+.+++-.
T Consensus 155 l~LG~~g 161 (390)
T COG3705 155 LELGHAG 161 (390)
T ss_pred EEeccHH
Confidence 9999855
No 57
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.3e-20 Score=209.48 Aligned_cols=154 Identities=29% Similarity=0.491 Sum_probs=138.8
Q ss_pred ccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccccc-CeeEEEecC-CCCCHHHHHHHHHHHHHHH
Q 046808 72 MTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIE-NGFYYDFDM-EPLTDKDLKRIKKEMDRII 149 (653)
Q Consensus 72 ~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~-~g~~~d~~~-~~lt~~~l~~Ie~~m~~iI 149 (653)
.+..|++|...+|+.+|...|.+||++|||.+|++++.+.+..+-|+.+. +.+++||++ +++|.++|++||..+|++|
T Consensus 544 ~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vNe~I 623 (879)
T COG0013 544 ELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNEII 623 (879)
T ss_pred ccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999888888888777 789999998 9999999999999999999
Q ss_pred hcCCCEEEEEecHHHHHHH--HHhcCChhhHHHhhhcCCCCEEEEEECCce-eeeeccccccccccccccceEEeecC-C
Q 046808 150 GRNLPLVREEVSRDEAKSR--IMAIKEPYKMEILESIIEDPITIYHIGEEW-WDLCAGPHVETTGKINKKAVELEGDE-K 225 (653)
Q Consensus 150 ~~~~pI~~~~~~~~eA~~~--~~~~~~~~k~~ll~~~~~~~v~i~~ig~~~-~d~c~G~hv~~Tg~i~~~~f~l~~~~-k 225 (653)
.+|+||+..++++++|++. ..-+|++| .+.||||++| +| .++|+||||.|||+| +.|+|.+.+ .
T Consensus 624 ~~n~~V~~~~m~~~eAk~~Ga~alfGekY---------~~~VRVV~ig-~~SvElCGGTHv~~Tg~I--G~fkI~~e~~i 691 (879)
T COG0013 624 RENLPVKTEEMDLDEAKAKGAMALFGEKY---------GDEVRVVEIG-DFSVELCGGTHVSNTGDI--GLFKIISEEGI 691 (879)
T ss_pred HcCCceeEEEccHHHHHHhChHhhcCCcC---------CCeEEEEEEC-CceeeccCCcccCCccce--eeEEEEEeccc
Confidence 9999999999999999997 22345555 6899999999 65 689999999999999 999999544 5
Q ss_pred ccceeeeccccc
Q 046808 226 KPMLQRIYGTAW 237 (653)
Q Consensus 226 ~~~l~Ri~g~~~ 237 (653)
...+.||..++-
T Consensus 692 ~aGVrRIeavtG 703 (879)
T COG0013 692 AAGVRRIEAVTG 703 (879)
T ss_pred ccCeEEEEEEcC
Confidence 667899998853
No 58
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=99.84 E-value=3.6e-20 Score=214.95 Aligned_cols=163 Identities=21% Similarity=0.332 Sum_probs=137.4
Q ss_pred cCccccc----ccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccc-cCeeEEEecC-CCCCHH
Q 046808 63 QNGKVEQ----AQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWI-ENGFYYDFDM-EPLTDK 136 (653)
Q Consensus 63 ~~~~~~~----~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~-~~g~~~d~~~-~~lt~~ 136 (653)
++.++.. ..++..|++|++.+||++|...|++||++|||++|++++++....+.|..+ .+++|+||+. .++|++
T Consensus 524 ~g~i~H~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e 603 (851)
T TIGR00344 524 NGVVFHFGEVEGGSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTRE 603 (851)
T ss_pred CCEEEEEEEeccCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHH
Confidence 5566654 236789999999999999999999999999999999999965555566555 5899999997 789999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHh--cCChhhHHHhhhcCCCCEEEEEECCc-eeeeeccccccccccc
Q 046808 137 DLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMA--IKEPYKMEILESIIEDPITIYHIGEE-WWDLCAGPHVETTGKI 213 (653)
Q Consensus 137 ~l~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~~~~--~~~~~k~~ll~~~~~~~v~i~~ig~~-~~d~c~G~hv~~Tg~i 213 (653)
++++||++||++|.+|+||...+++++||.+++.. .+++| .+.||||+|| + ..++|+||||+|||+|
T Consensus 604 el~~IE~~vNelI~~n~pV~~~~~~~eeA~~~~~~~~~~e~y---------~~~VRVV~Ig-~~d~e~CgGTHV~nTgeI 673 (851)
T TIGR00344 604 ELEKIEDLVNEQILANIPIKVIFMDLDEAKAKGAFALFGEKY---------GEKVRVVSVG-DVSVELCGGTHVRNTGEI 673 (851)
T ss_pred HHHHHHHHHHHHHHhCCceEEEEeCHHHHHhcchhhhcCCCC---------CCeEEEEEEC-CeeccCCCCCccCChhhC
Confidence 99999999999999999999999999999997532 22222 5689999999 6 4678999999999999
Q ss_pred cccceEEeecC-Cccceeeeccccc
Q 046808 214 NKKAVELEGDE-KKPMLQRIYGTAW 237 (653)
Q Consensus 214 ~~~~f~l~~~~-k~~~l~Ri~g~~~ 237 (653)
+.|+|.+.+ ..+...|++.++-
T Consensus 674 --g~~kI~~~~~~~~G~~RIe~v~G 696 (851)
T TIGR00344 674 --GLFKIVKESGIAAGVRRIEAVTG 696 (851)
T ss_pred --eEEEEEEEeEecCCeEEEEEEEc
Confidence 999999655 4567889999864
No 59
>PLN02900 alanyl-tRNA synthetase
Probab=99.84 E-value=2.9e-20 Score=216.21 Aligned_cols=163 Identities=22% Similarity=0.377 Sum_probs=137.6
Q ss_pred cCccccc----ccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccc-cCeeEEEecC-CCCCHH
Q 046808 63 QNGKVEQ----AQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWI-ENGFYYDFDM-EPLTDK 136 (653)
Q Consensus 63 ~~~~~~~----~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~-~~g~~~d~~~-~~lt~~ 136 (653)
++.++.. ..++..|++|+..+||++|...|++||++|||++|++++++....+.|..+ .+++|+||+. .++|++
T Consensus 562 ~g~i~H~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~e 641 (936)
T PLN02900 562 GGFVLHIGTVTEGSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPE 641 (936)
T ss_pred CCEEEEEEEeccCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCCCCCHH
Confidence 5666654 346788999999999999999999999999999999999976555566655 4899999997 889999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEecHHHHHHH--HH-hcCChhhHHHhhhcCCCCEEEEEECCce--eeeeccccccccc
Q 046808 137 DLKRIKKEMDRIIGRNLPLVREEVSRDEAKSR--IM-AIKEPYKMEILESIIEDPITIYHIGEEW--WDLCAGPHVETTG 211 (653)
Q Consensus 137 ~l~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~--~~-~~~~~~k~~ll~~~~~~~v~i~~ig~~~--~d~c~G~hv~~Tg 211 (653)
++.+||++||++|.+|+||+...++++||.++ +. ..++.| .+.||||.|+ ++ .++|+||||+|||
T Consensus 642 el~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y---------~~~VRVV~Ig-~~~d~elCGGTHV~nTg 711 (936)
T PLN02900 642 ELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKY---------PDPVRVVSVG-GVYSMELCGGTHVSNTA 711 (936)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCC---------CCcEEEEEEC-CccceeCCCCCcCCccc
Confidence 99999999999999999999999999999984 22 223333 4689999999 64 6789999999999
Q ss_pred cccccceEEeecC-Cccceeeeccccc
Q 046808 212 KINKKAVELEGDE-KKPMLQRIYGTAW 237 (653)
Q Consensus 212 ~i~~~~f~l~~~~-k~~~l~Ri~g~~~ 237 (653)
+| +.|+|.+.+ ..+.+.|++.++-
T Consensus 712 eI--G~fkIls~~~~~~G~rRIe~v~G 736 (936)
T PLN02900 712 EA--EAFKLLSEEGIAKGIRRITAVTG 736 (936)
T ss_pred cC--ceEEEEEEeeecCCeEEEEEEEc
Confidence 99 999999654 4456779999864
No 60
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=99.83 E-value=3.9e-20 Score=215.71 Aligned_cols=165 Identities=23% Similarity=0.388 Sum_probs=136.3
Q ss_pred cCccccc----ccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccc-cCeeEEEecC-CCCCHH
Q 046808 63 QNGKVEQ----AQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWI-ENGFYYDFDM-EPLTDK 136 (653)
Q Consensus 63 ~~~~~~~----~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~-~~g~~~d~~~-~~lt~~ 136 (653)
+|.+|.. ..++..|++|+..+||++|...|++||++|||++|++++|+....+.|..+ .+++++||+. .++|++
T Consensus 517 ~g~i~H~~~~~~~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~lt~e 596 (865)
T PRK00252 517 NGLIVHRGKVEEGELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPE 596 (865)
T ss_pred CCEEEEEEEeccCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCCCCHH
Confidence 5565544 446789999999999999999999999999999999999965444455554 5899999987 789999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCChhhHHHhhhcCCCCEEEEEECCc-eeeeeccccccccccccc
Q 046808 137 DLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILESIIEDPITIYHIGEE-WWDLCAGPHVETTGKINK 215 (653)
Q Consensus 137 ~l~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~~~~~~~v~i~~ig~~-~~d~c~G~hv~~Tg~i~~ 215 (653)
++.+||++||++|.+|+||....++++||.+... ..++.....+.||||+|| + ..++|+||||+|||+|
T Consensus 597 el~~IE~~vN~lI~~n~pV~~~~~~~~eA~~~~~-------~~~~~~~y~~~VRVV~Ig-~~d~~~CgGTHV~nTgeI-- 666 (865)
T PRK00252 597 ELRKIEDLVNEKIRENLPVETEEMSIEEAKKMGA-------MALFGEKYGDEVRVVSIG-DFSIELCGGTHVSNTGDI-- 666 (865)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhCCc-------hhhccccCCCeEEEEEEC-CceeeCCCCCccCCcccC--
Confidence 9999999999999999999999999999987411 112222226789999999 6 5688999999999999
Q ss_pred cceEEeecC-Cccceeeeccccc
Q 046808 216 KAVELEGDE-KKPMLQRIYGTAW 237 (653)
Q Consensus 216 ~~f~l~~~~-k~~~l~Ri~g~~~ 237 (653)
+.|+|++.+ ..+...|++.++-
T Consensus 667 g~~kI~~~~~~~~g~~RI~~v~G 689 (865)
T PRK00252 667 GLFKIVSESGVAAGVRRIEAVTG 689 (865)
T ss_pred eEEEEEEEeeecCCeEEEEEEEC
Confidence 999999655 4456779999864
No 61
>PLN02961 alanine-tRNA ligase
Probab=99.82 E-value=5.4e-20 Score=183.05 Aligned_cols=154 Identities=16% Similarity=0.238 Sum_probs=124.5
Q ss_pred cccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHH-cCCCEEEecccccCeeEEEecCCCCCHHH----HHHHHHHH
Q 046808 71 QMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKL-YPDAKVTIGPWIENGFYYDFDMEPLTDKD----LKRIKKEM 145 (653)
Q Consensus 71 ~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l-~~~~~~~~~~~~~~g~~~d~~~~~lt~~~----l~~Ie~~m 145 (653)
.++..|++|+..+||++|...|++||++|||++|++++ ++....+.+++..++.|+|+.. .++.++ +.+||+++
T Consensus 62 ~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~~~~~~v~~~~-~i~~~~~~~~~~~iE~~~ 140 (223)
T PLN02961 62 SPFEAGDEVTVTVDESRRKLHSRLHSAGHLLDVCMARVGLGPLEPGKGYHFPDGPFVEYKG-KIPQGELDSKQDELEAEA 140 (223)
T ss_pred CCCCCCCEEEEEECHHHHhhhhccCcHHHHHHHHHHHcCCCccccccccccCCccceeecc-cCCHHHHHhHHHHHHHHH
Confidence 46788999999999999999999999999999999997 6544456777788888988763 455544 57999999
Q ss_pred HHHHhcCCCEEEEEecHHHHHHHHHhcCChhhHHHhhhcCCCCEEEEEECCceeee-eccccccccccccccceEEeecC
Q 046808 146 DRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILESIIEDPITIYHIGEEWWDL-CAGPHVETTGKINKKAVELEGDE 224 (653)
Q Consensus 146 ~~iI~~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~~~~~~~v~i~~ig~~~~d~-c~G~hv~~Tg~i~~~~f~l~~~~ 224 (653)
|++|.+++||+..+++++||.++... ..+. . ..+.+.|||++|+ ++... |+||||.|||+| +.|+|.+.+
T Consensus 141 N~~I~~~~~V~~~~~~~~ea~~~~~~-~~~~---~--~~~~~~vRiV~I~-~~d~~~CgGTHv~nT~ei--g~i~I~~~~ 211 (223)
T PLN02961 141 NELIAEGGKVSAAVLPYDEAAELCGG-SLPD---Y--IAKDSTPRIVKIG-DSPGCPCGGTHVADVSEI--TSVKVTQIR 211 (223)
T ss_pred HHHHHcCCceeEEEeCHHHHHHhcCC-cCCC---c--CCCCCceEEEEEC-CCccCccCCcccCchhcc--ccEEEEEEE
Confidence 99999999999999999999886321 0010 0 0125689999999 65444 999999999999 999999777
Q ss_pred Cccceeeecc
Q 046808 225 KKPMLQRIYG 234 (653)
Q Consensus 225 k~~~l~Ri~g 234 (653)
+++...|++.
T Consensus 212 ~~kg~~Rv~~ 221 (223)
T PLN02961 212 VKKGVTRVSY 221 (223)
T ss_pred ecCCEEEEEE
Confidence 6677778865
No 62
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=99.82 E-value=1.4e-19 Score=210.54 Aligned_cols=165 Identities=21% Similarity=0.304 Sum_probs=135.8
Q ss_pred cCcccccc--cccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccccc-CeeEEEecC-CCCCHHHH
Q 046808 63 QNGKVEQA--QMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIE-NGFYYDFDM-EPLTDKDL 138 (653)
Q Consensus 63 ~~~~~~~~--~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~-~g~~~d~~~-~~lt~~~l 138 (653)
+|.++..- .++..|++|+..+||++|...|++||++|||++|++++++.+..+.|..++ +.+|+||+. +++|++++
T Consensus 559 ~g~i~H~~~~~~~~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel 638 (900)
T PRK13902 559 GGVIVHVLEGEPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREEV 638 (900)
T ss_pred CCEEEEEeCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHHH
Confidence 45555332 223458999999999999999999999999999999999766567676655 899999997 88999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCChhhHHHhh--hcCCCCEEEEEECCce-eeeeccccccccccccc
Q 046808 139 KRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILE--SIIEDPITIYHIGEEW-WDLCAGPHVETTGKINK 215 (653)
Q Consensus 139 ~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~--~~~~~~v~i~~ig~~~-~d~c~G~hv~~Tg~i~~ 215 (653)
++||+.||++|.+|+||+..+++++||.+... ..+.. ..+.+.||||+|+ ++ .++|+||||.|||+|
T Consensus 639 ~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~-------~~l~~~g~~~~~~VRVV~Ig-~~d~e~CgGTHV~nTgeI-- 708 (900)
T PRK13902 639 KEIERLANEIVMENRPVKVEWMDRNEAEQKYG-------FRLYQGGVPPGKTIRVVEIG-DWDVEACGGTHVSNTGEI-- 708 (900)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCHHHHHhccc-------hhhhccCCCCCCeEEEEEEC-CeeeeCCCCCCcCcHhhC--
Confidence 99999999999999999999999999988532 12221 1236789999999 64 678999999999999
Q ss_pred cceEEeecCC-ccceeeeccccc
Q 046808 216 KAVELEGDEK-KPMLQRIYGTAW 237 (653)
Q Consensus 216 ~~f~l~~~~k-~~~l~Ri~g~~~ 237 (653)
+.|+|.+.++ .+.+.|++..+-
T Consensus 709 G~~kI~~~e~i~~Gv~RIe~v~G 731 (900)
T PRK13902 709 GPIKILKTERIQDGVERLEFAAG 731 (900)
T ss_pred eeEEEEEEEEecCCeEEEEEEEC
Confidence 9999997654 566789999864
No 63
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=99.82 E-value=1.5e-19 Score=210.23 Aligned_cols=165 Identities=20% Similarity=0.281 Sum_probs=136.8
Q ss_pred cCcccccc-c-ccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccccc-CeeEEEecC-CCCCHHHH
Q 046808 63 QNGKVEQA-Q-MTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIE-NGFYYDFDM-EPLTDKDL 138 (653)
Q Consensus 63 ~~~~~~~~-~-~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~-~g~~~d~~~-~~lt~~~l 138 (653)
+|.++..- . ++..|++|+..+||++|...|++||++|||++|++++++.+..+.|..++ +.+++||+. .++|++++
T Consensus 563 ~g~i~H~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel 642 (902)
T TIGR03683 563 GGVIVHKVDGEGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEEI 642 (902)
T ss_pred CCEEEEEeCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHHH
Confidence 45555432 2 27889999999999999999999999999999999999765567677665 899999997 88999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCChhhHHHhh--hcCCCCEEEEEECCce-eeeeccccccccccccc
Q 046808 139 KRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILE--SIIEDPITIYHIGEEW-WDLCAGPHVETTGKINK 215 (653)
Q Consensus 139 ~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~--~~~~~~v~i~~ig~~~-~d~c~G~hv~~Tg~i~~ 215 (653)
++||+.||++|.+|+||+..+++++||.+... ..+.. ..+.+.||||+|| ++ ..+|+||||.|||+|
T Consensus 643 ~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~-------~~l~~~~~~~~~~VRVV~Ig-~~d~e~CgGTHV~nTgeI-- 712 (902)
T TIGR03683 643 KEIERLANRIVMENRPVSVKWMDRNEAEQKYG-------FRLYQGGVPPGREIRVVEIE-DWDVQACGGTHCRNTGEI-- 712 (902)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCc-------hhhhccCCCCCCeEEEEEEC-CeeeeCCCCCCccchhcC--
Confidence 99999999999999999999999999988532 11221 1226789999999 64 578999999999999
Q ss_pred cceEEeecC-Cccceeeeccccc
Q 046808 216 KAVELEGDE-KKPMLQRIYGTAW 237 (653)
Q Consensus 216 ~~f~l~~~~-k~~~l~Ri~g~~~ 237 (653)
+.|+|.+.+ ..+.+.|++.++-
T Consensus 713 G~~kI~~~~~i~~Gv~RIe~v~G 735 (902)
T TIGR03683 713 GPIKILKTERIQDGVERIEFAAG 735 (902)
T ss_pred ceEEEEEEEEecCCeEEEEEEEC
Confidence 999999655 3567889998864
No 64
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.82 E-value=1.1e-19 Score=200.42 Aligned_cols=141 Identities=24% Similarity=0.445 Sum_probs=118.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccc-cCeeEEEecC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecH
Q 046808 85 ESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWI-ENGFYYDFDM-EPLTDKDLKRIKKEMDRIIGRNLPLVREEVSR 162 (653)
Q Consensus 85 ~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~-~~g~~~d~~~-~~lt~~~l~~Ie~~m~~iI~~~~pI~~~~~~~ 162 (653)
.+.....|++|||+|||++|++++||....+.|+.+ .+++|+||+. +++|++++++||++||++|.+|+||+..++++
T Consensus 447 ~d~g~~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~it~edL~~IE~~vNeiI~~n~pV~~~~~s~ 526 (594)
T PRK01584 447 ADHSYETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVEDIVNLQIKNDLSVKKEVMSL 526 (594)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCH
Confidence 344558999999999999999999987767777555 5899999997 78999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHHhhhcCCCCEEEEEECCce-eeeeccccccccccccccceEEeec-CCccceeeeccc
Q 046808 163 DEAKSRIMAIKEPYKMEILESIIEDPITIYHIGEEW-WDLCAGPHVETTGKINKKAVELEGD-EKKPMLQRIYGT 235 (653)
Q Consensus 163 ~eA~~~~~~~~~~~k~~ll~~~~~~~v~i~~ig~~~-~d~c~G~hv~~Tg~i~~~~f~l~~~-~k~~~l~Ri~g~ 235 (653)
+||+++.. ..++.....+.||||+|| ++ .++|+||||+|||+| +.|+|++. +..+.+.|+..+
T Consensus 527 eEA~~~~~-------~~lf~e~y~~~VRVV~Ig-d~d~elCGGTHV~nTgeI--G~fkI~s~~s~g~GvrRI~av 591 (594)
T PRK01584 527 EEAREKGA-------MALFGEKYEDIVKVYEID-GFSKEVCGGPHVENTGEL--GTFKIQKEQSSSSGVRRIRAI 591 (594)
T ss_pred HHHHhcch-------hhhccccCCCcEEEEEEC-CeeeeCCCCCCCCCcccC--ceEEEEecccccCCeEEEEEE
Confidence 99998522 112221126789999999 76 789999999999999 99999964 466777788765
No 65
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=99.77 E-value=2.6e-18 Score=169.24 Aligned_cols=155 Identities=26% Similarity=0.312 Sum_probs=129.2
Q ss_pred cccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCeeEEEecCCCCCHHHHHHHHHHHHHHHh
Q 046808 71 QMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRIIG 150 (653)
Q Consensus 71 ~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~~g~~~d~~~~~lt~~~l~~Ie~~m~~iI~ 150 (653)
..+..|++|++.+||++|..+|++||++|||++++.+.++ .....++...+..+.||+.+. ++++++++++..|++|+
T Consensus 75 ~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~-~~~~g~~i~~d~~~iD~~~e~-~~~~~~~v~~~~ne~v~ 152 (241)
T COG2872 75 AKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG-ALTTGFEIGEDYARIDFDGED-TEDEIEEVEALANELVK 152 (241)
T ss_pred ccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc-ceeecceeccccccccccccc-chhhHHHHHHHHHHHHH
Confidence 4468999999999999999999999999999999999995 656666666788899998744 89999999999999999
Q ss_pred cCCCEEEEEecHHHHHHHHHhcCChhhHHHhhhcC--CCCEEEEEECCceeee--eccccccccccccccceEEeec-CC
Q 046808 151 RNLPLVREEVSRDEAKSRIMAIKEPYKMEILESII--EDPITIYHIGEEWWDL--CAGPHVETTGKINKKAVELEGD-EK 225 (653)
Q Consensus 151 ~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~~~~--~~~v~i~~ig~~~~d~--c~G~hv~~Tg~i~~~~f~l~~~-~k 225 (653)
+|+||....++++||.+++.. .+... ...+ .+.||+++|+ + +|. |+||||.+||+| +.++|... .+
T Consensus 153 ~~~~v~~~~i~~EE~~~~p~~----~~~~~-~~~~~~~g~iRiV~I~-d-id~qpCgGtHVk~T~EI--G~Iki~k~e~k 223 (241)
T COG2872 153 ENLPVIIYFIPREEAEKLPGL----VKLKN-KVPPDVEGKIRIVEIG-D-IDVQPCGGTHVKNTGEI--GEIKILKTEKK 223 (241)
T ss_pred cCCeeeeeecCHHHHhhCcCh----hhhcc-cCCccccceEEEEEEC-C-eeccCCCCcccCCccce--EEEEEEEEEEe
Confidence 999999999999999997441 12221 1122 3479999998 5 554 999999999999 99999955 46
Q ss_pred ccceeeecccc
Q 046808 226 KPMLQRIYGTA 236 (653)
Q Consensus 226 ~~~l~Ri~g~~ 236 (653)
.+...|++..+
T Consensus 224 ~k~~~Rv~f~~ 234 (241)
T COG2872 224 GKGNRRVYFTL 234 (241)
T ss_pred cCceEEEEEEe
Confidence 77888998875
No 66
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.76 E-value=1.7e-17 Score=164.28 Aligned_cols=208 Identities=25% Similarity=0.374 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCC
Q 046808 289 RHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFP 368 (653)
Q Consensus 289 ~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP 368 (653)
++.+++.+++.+..+||++|.||.|++.+.+...+... +.+....+..++..+|||+.++.+..+++.+. +++|
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~---~~~~ 75 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEP---KDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI---RKLP 75 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccH---hheeeeecCCCCEEEECCCCcHHHHHHHHhhc---ccCC
Confidence 67899999999999999999999999998887655442 34555566778899999999999999888775 5799
Q ss_pred cEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC-eEEEEecCCcccccCCc
Q 046808 369 IRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN-KYEVNLSTKPEKAVGGD 447 (653)
Q Consensus 369 ~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~-~~~v~l~~~~~~~~g~~ 447 (653)
+|+|++|+|||.|..+ .++.|++||+|.+++++|.+.+....+.++..++.++++.+|+. .+.+.....+
T Consensus 76 ~~lfeig~vfr~e~~~--~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~------- 146 (211)
T cd00768 76 LRLAEIGPAFRNEGGR--RGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLDIVFVEKTPG------- 146 (211)
T ss_pred EEEEEEcceeecCCCc--cccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCCcceEEEecCch-------
Confidence 9999999999999765 43458999999999999987654344679999999999999973 3333212110
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccccceE-EEecCCcccccEEECCCCCcccCEEE
Q 046808 448 DIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQ-VDFNLPQRFDIVYVDSNSEKKRPIMI 526 (653)
Q Consensus 448 ~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~i~-~d~~~~~r~d~~~~~~~g~~~~p~~g 526 (653)
..|. +..|+..++.+.+..++..+++++. +.......+|+.|.++.++...|.++
T Consensus 147 ~~~~------------------------~~~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~~~~~~~~~~~p~~~ 202 (211)
T cd00768 147 EFSP------------------------GGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYPPTI 202 (211)
T ss_pred hhcc------------------------ccCCceEEEEEEccCCCeEEEeeceeecCchhHhhhhheecccccccCceee
Confidence 0000 1234455666665555555555543 22233366899898888888889999
Q ss_pred EecccCchHHH
Q 046808 527 HRAVLGSLERF 537 (653)
Q Consensus 527 ~~~i~GgieRl 537 (653)
++|+ |+||+
T Consensus 203 ~~~~--~~~R~ 211 (211)
T cd00768 203 GFGL--GLERL 211 (211)
T ss_pred cCcc--CccCC
Confidence 9884 79994
No 67
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=99.75 E-value=1.1e-17 Score=163.92 Aligned_cols=105 Identities=22% Similarity=0.374 Sum_probs=98.1
Q ss_pred cCCCCCCCCCceEEEEecChh------hHHHHHHHHHHHHhCCCeEEEeC-CC-CHHHHHHHHHHcCCCEEEEECccccc
Q 046808 546 AGDFPLWLSPIQARVLPVTDT------QLEYCNEVIKKLKTNGIRAEICH-GE-RLPKLIRNAEKQKIPLMAVVGAKEVD 617 (653)
Q Consensus 546 ~~~~P~~lap~~v~Vi~~~~~------~~~~a~~la~~Lr~~Gi~v~~d~-~~-~~~kk~~~A~~~gip~~iiiG~~e~~ 617 (653)
|..||+|++|+||+|+|+++. ..++|.+|++.|+++|++|++|+ +. ++|+|+++|++.|+|++|+||++|++
T Consensus 1 GLvlP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~Ele 80 (202)
T cd00862 1 GLVLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLE 80 (202)
T ss_pred CCcCChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcchhh
Confidence 357999999999999999754 78899999999999999999999 77 99999999999999999999999999
Q ss_pred CCeEEEEECCCCceeeeeHHHHHHHHHHHHhhh
Q 046808 618 AQTVTVRSRFGGELGTMKVDDFISRIKSATENR 650 (653)
Q Consensus 618 ~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~~ 650 (653)
+|+|+|++|+++++..++++++++.+.+++++-
T Consensus 81 ~g~V~v~~Rd~~ek~~v~~~el~~~i~~ll~~i 113 (202)
T cd00862 81 KNTVVIVRRDTGEKKTVPLAELVEKVPELLDEI 113 (202)
T ss_pred CCEEEEEEecCCcceEEEHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877753
No 68
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.73 E-value=4.1e-17 Score=147.55 Aligned_cols=101 Identities=12% Similarity=0.177 Sum_probs=94.8
Q ss_pred CCCCCCCCceEEEEecC---hhhHHHHHHHHHHHHhCCCeEEEeC-CC---CHHHHHHHHHHcCCCEEEEECcccccCCe
Q 046808 548 DFPLWLSPIQARVLPVT---DTQLEYCNEVIKKLKTNGIRAEICH-GE---RLPKLIRNAEKQKIPLMAVVGAKEVDAQT 620 (653)
Q Consensus 548 ~~P~~lap~~v~Vi~~~---~~~~~~a~~la~~Lr~~Gi~v~~d~-~~---~~~kk~~~A~~~gip~~iiiG~~e~~~~~ 620 (653)
.||+.+||+||.|+|+. ++..+.|.++++.|+++|++|.+|+ .. ++|+||++|+.+|+|++|+||++++++|+
T Consensus 20 ~~P~~iAP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliGiP~~I~IG~~~l~~g~ 99 (128)
T cd02426 20 KLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLFTLLISEQTLENGL 99 (128)
T ss_pred ECCCCCCCeEEEEEeccCChHHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcCCCEEEEECCCcccCCE
Confidence 79999999999999994 4678889999999999999999999 54 89999999999999999999999999999
Q ss_pred EEEEECCCCceeeeeHHHHHHHHHHHHh
Q 046808 621 VTVRSRFGGELGTMKVDDFISRIKSATE 648 (653)
Q Consensus 621 V~vk~~~~~~q~~v~~~el~~~i~~~~~ 648 (653)
|++++|+|+++..++++++.+.+.+++.
T Consensus 100 vei~~Rdt~~k~~v~~~~l~~~i~~~~~ 127 (128)
T cd02426 100 LQLRSRDTTLKETIHISDLPDYLLRYIA 127 (128)
T ss_pred EEEEECCCCceEEEeHHHHHHHHHHHhh
Confidence 9999999999999999999999987764
No 69
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.73 E-value=5.5e-17 Score=146.18 Aligned_cols=100 Identities=21% Similarity=0.343 Sum_probs=95.2
Q ss_pred CCCCCCCCceEEEEecC--hhhHHHHHHHHHHHHhCCCeEEEeCCCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEE
Q 046808 548 DFPLWLSPIQARVLPVT--DTQLEYCNEVIKKLKTNGIRAEICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRS 625 (653)
Q Consensus 548 ~~P~~lap~~v~Vi~~~--~~~~~~a~~la~~Lr~~Gi~v~~d~~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~ 625 (653)
.||+|++|++|+|++.+ ++....|.++++.||++|++|++|+..++++|+++|++.|+|+++|||++|+++|+|+||+
T Consensus 19 ~~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~lk~ 98 (121)
T cd00858 19 RLPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDSGSIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIRE 98 (121)
T ss_pred EcCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHhHhcCCCEEEEECcCchhCCEEEEEE
Confidence 69999999999999999 8888999999999999999999987678999999999999999999999999999999999
Q ss_pred CCCCceeeeeHHHHHHHHHHHH
Q 046808 626 RFGGELGTMKVDDFISRIKSAT 647 (653)
Q Consensus 626 ~~~~~q~~v~~~el~~~i~~~~ 647 (653)
++++++.+++++++.+.+.+++
T Consensus 99 l~~~~~~~v~l~~l~~~l~~~~ 120 (121)
T cd00858 99 RDSMRQVRVKIEELPSYLRELI 120 (121)
T ss_pred CCCCceEEEEHHHHHHHHHHHh
Confidence 9999999999999998888765
No 70
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.69 E-value=1.4e-16 Score=136.88 Aligned_cols=90 Identities=36% Similarity=0.602 Sum_probs=86.8
Q ss_pred eEEEEecCh---hhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCcee
Q 046808 557 QARVLPVTD---TQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELG 632 (653)
Q Consensus 557 ~v~Vi~~~~---~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~ 632 (653)
||+|+|++. +..++|.++++.||++|+++++|+ +.++++||++|++.|+||++|||++|.++|+|+||+|+++++.
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~ 80 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDTGEQE 80 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTTTEEE
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCCCcEE
Confidence 689999998 889999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eeeHHHHHHHHHHH
Q 046808 633 TMKVDDFISRIKSA 646 (653)
Q Consensus 633 ~v~~~el~~~i~~~ 646 (653)
.++++++.+.|++.
T Consensus 81 ~v~~~el~~~l~~~ 94 (94)
T PF03129_consen 81 TVSLEELIEYLKEN 94 (94)
T ss_dssp EEECCHHHHHHHHH
T ss_pred EEEHHHHHHHHhhC
Confidence 99999999998763
No 71
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=8.8e-17 Score=173.95 Aligned_cols=161 Identities=24% Similarity=0.439 Sum_probs=136.8
Q ss_pred cccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccccc-CeeEEEecC-CCCCHHHHHHHHHHHH
Q 046808 69 QAQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIE-NGFYYDFDM-EPLTDKDLKRIKKEMD 146 (653)
Q Consensus 69 ~~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~-~g~~~d~~~-~~lt~~~l~~Ie~~m~ 146 (653)
+..++..|+.|++..|..+|...|.+||++|||+.|+++++++.. +.|+++. +.+++||.. ..+|.++++++|..||
T Consensus 545 l~~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l~~t~-QkGSlV~pdklRfDf~~k~~lt~eql~~vE~~~n 623 (895)
T KOG0188|consen 545 LEGDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVLKGTD-QKGSLVAPDKLRFDFSTKGALTKEQLKKVEDKIN 623 (895)
T ss_pred eccccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhccccc-ccccccChhHeeeecccCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999999999999999999999995544 5555555 999999998 6699999999999999
Q ss_pred HHHhcCCCEEEEEecHHHHHHH--HHh-cCChhhHHHhhhcCCCCEEEEEECCc---eeeeeccccccccccccccceEE
Q 046808 147 RIIGRNLPLVREEVSRDEAKSR--IMA-IKEPYKMEILESIIEDPITIYHIGEE---WWDLCAGPHVETTGKINKKAVEL 220 (653)
Q Consensus 147 ~iI~~~~pI~~~~~~~~eA~~~--~~~-~~~~~k~~ll~~~~~~~v~i~~ig~~---~~d~c~G~hv~~Tg~i~~~~f~l 220 (653)
++|.++.||...+++..+|+++ ++. .++.| .++||||.+|.+ .+++|+|||+.+||.| +.|.|
T Consensus 624 e~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~Y---------PdpVRVVsvg~~~~~svE~CgGTH~~~t~~i--~~fvI 692 (895)
T KOG0188|consen 624 EFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVY---------PDPVRVVSVGAGQLTSVEFCGGTHLTNTSHI--GDFVI 692 (895)
T ss_pred HHHhcCCceEEEecCHHHHhcCCCcccccCCcc---------CCceEEEEeccccccceeecCCccccccccc--ceEEE
Confidence 9999999999999999999987 443 44445 589999999832 4578999999999999 99999
Q ss_pred eecC-CccceeeecccccccHH
Q 046808 221 EGDE-KKPMLQRIYGTAWENEE 241 (653)
Q Consensus 221 ~~~~-k~~~l~Ri~g~~~~~~~ 241 (653)
.+.+ -.+.+.||..+.-+..+
T Consensus 693 ~se~~iakgirRivavTG~eA~ 714 (895)
T KOG0188|consen 693 VSEEGIAKGIRRIVAVTGKEAQ 714 (895)
T ss_pred echhhhhhceeEEEEeccHHHH
Confidence 9554 56778899888654433
No 72
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.67 E-value=5.5e-16 Score=160.74 Aligned_cols=112 Identities=30% Similarity=0.569 Sum_probs=103.0
Q ss_pred hHHHHHHHHHh-h---cCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEE
Q 046808 534 LERFFGVLIEH-Y---AGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLM 608 (653)
Q Consensus 534 ieRli~~L~e~-~---~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~ 608 (653)
++|++.+++.+ + -+.||+|++|.+|+|++.+++....|.++++.||++|++|++|+ +.++++|+++|++.|+|++
T Consensus 249 ~~r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~eel~e~AlkLA~eLR~aGIrVeiDl~srSLgKQiK~AdK~GaPfv 328 (387)
T PRK14938 249 VGLLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDDLDDSLGNKIRRAGTEWIPFV 328 (387)
T ss_pred ecHHHHHHHHHhhhHHhCcCCCccCcceEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEE
Confidence 78877766543 2 26899999999999999998888999999999999999999999 8999999999999999999
Q ss_pred EEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHH
Q 046808 609 AVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKS 645 (653)
Q Consensus 609 iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~ 645 (653)
++||++|+++|+|+||+|++++|..++++++.+.+++
T Consensus 329 IIIGedEle~gtVtIKdrdTgEQ~~IsLdELie~Lkk 365 (387)
T PRK14938 329 IIIGEREVKTSTLTVKIRANNEQKSMTVEELVKEIKR 365 (387)
T ss_pred EEECchhhhCCeEEEEECCCCceEEEeHHHHHHHHHh
Confidence 9999999999999999999999999999999887764
No 73
>PRK07080 hypothetical protein; Validated
Probab=99.66 E-value=3.1e-15 Score=151.02 Aligned_cols=241 Identities=17% Similarity=0.099 Sum_probs=169.1
Q ss_pred ccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc----------------
Q 046808 274 AGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN---------------- 337 (653)
Q Consensus 274 ~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d---------------- 337 (653)
-..|+|-..+.=..+.+.|...+...-...|++++..|.+.+.+.|.++++.+.|...++.+.-
T Consensus 35 g~~g~ygrs~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek~~Y~ksFP~l~~~V~~~~g~~~e~~~ll~~~~ 114 (317)
T PRK07080 35 GVDGLYGRSGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFERSGYLKSFPQLAGTVHSFCGNEAEHRRLLACLD 114 (317)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHhcChhhhCcccceeecCCCCCCHHHHHHHHHHH
Confidence 3467777776666667777776666666667999999999999999999999999887775421
Q ss_pred --------cCCceEEeccCChHHHHHHHHhh-hcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchh
Q 046808 338 --------IEDELYQLRPMNCPYHILVYQRK-LQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQ 408 (653)
Q Consensus 338 --------~~~~~l~LrP~~~~~~~~~~~~~-~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~ 408 (653)
.....++|.|..|.+++.++.+. ...- + -..+--.|.|||+|.+ +++-|+.+|.|.|+..+|++++
T Consensus 115 ~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~-~-g~~~dv~g~CFR~E~s---~dl~Rl~~F~mrE~V~iGt~e~ 189 (317)
T PRK07080 115 RGEDWTESQKPTDVVLTPAACYPVYPVLARRGALPA-D-GRLVDVASYCFRHEPS---LDPARMQLFRMREYVRIGTPEQ 189 (317)
T ss_pred hcCchhhhcCCCcceecccccccchhhhccCcccCC-C-CcEEEeeeeeeccCCC---CCcHHHhheeeeEEEEecCHHH
Confidence 12357999999999988887753 2221 1 1455566999999985 6799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEe-
Q 046808 409 IKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIE- 487 (653)
Q Consensus 409 ~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~- 487 (653)
..+....+++.+..+.+.||| .+.+++.+.|. .|..... ++..+. .. ..|+++.+.
T Consensus 190 v~~~r~~w~e~~~~l~~~LgL-~~~ve~AnDPF--F~~~gk~-~a~~Qr-------~~------------~lKfEl~vpi 246 (317)
T PRK07080 190 IVAFRQSWIERGTAMADALGL-PVEIDLANDPF--FGRGGKI-VAASQR-------EQ------------NLKFELLIPI 246 (317)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-ceeEeecCCcc--ccccchh-hhhhhh-------hc------------cceeEEEEec
Confidence 988888999999999999999 78888888874 3321100 010000 00 013333321
Q ss_pred cccCCcccccceE-EEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhcCC
Q 046808 488 DALGRKWQCSTIQ-VDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGD 548 (653)
Q Consensus 488 d~~g~~~~~~~i~-~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~~ 548 (653)
..-+....|.++. |--.+|.+++|. +.+| ...+++|.|+ |+|||..+|+.+||..
T Consensus 247 ~~~~~~tA~~S~NyH~dhFg~~f~I~--~~~g--~~ahTgCvGF--GlER~a~All~~hG~d 302 (317)
T PRK07080 247 YSDAPPTACMSFNYHMDHFGLTWGIR--TADG--AVAHTGCVGF--GLERLALALFRHHGLD 302 (317)
T ss_pred CCCCCceEEEEEehhhhccccccCcc--cCCC--CEeEEeeeec--CHHHHHHHHHHHhCCC
Confidence 1112233444321 222456888875 3333 4578999995 6999999999999864
No 74
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.65 E-value=7.2e-16 Score=132.47 Aligned_cols=89 Identities=22% Similarity=0.385 Sum_probs=84.7
Q ss_pred CceEEEEecCh---hhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCc
Q 046808 555 PIQARVLPVTD---TQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGE 630 (653)
Q Consensus 555 p~~v~Vi~~~~---~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~ 630 (653)
|+||+|+|+.. +...+|.+++..||++|++|++|+ ..++++++++|++.|+|++++||++|+++|+|+||+|.+++
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~~ 80 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGE 80 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECCCCc
Confidence 89999999987 678899999999999999999999 88999999999999999999999999999999999999999
Q ss_pred eeeeeHHHHHHHH
Q 046808 631 LGTMKVDDFISRI 643 (653)
Q Consensus 631 q~~v~~~el~~~i 643 (653)
+..++++++.+.+
T Consensus 81 ~~~~~~~~~~~~l 93 (94)
T cd00861 81 KEEISIDELLEFL 93 (94)
T ss_pred ceEEeHHHHHHhh
Confidence 9999999997765
No 75
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=99.58 E-value=3.2e-15 Score=145.66 Aligned_cols=146 Identities=18% Similarity=0.353 Sum_probs=115.4
Q ss_pred ccccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCeeEEEecC--CCCCHHHHHHHHHHH
Q 046808 68 EQAQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIENGFYYDFDM--EPLTDKDLKRIKKEM 145 (653)
Q Consensus 68 ~~~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~~g~~~d~~~--~~lt~~~l~~Ie~~m 145 (653)
..+.++++|.+|+.-.||.+|..+|++||.+||+.+.+.++| ++..-+|.-.+|+-.+.. .++|.+++..|++.+
T Consensus 85 ~~~~~iePGt~V~V~VD~qkR~D~MQQHsGQHLitAvad~~f---KlkTtSWelG~~~sa~e~~~~~mTaeqvaaieqsv 161 (415)
T KOG2105|consen 85 HVNDYIEPGTTVEVAVDEQKRMDYMQQHSGQHLITAVADHLF---KLKTTSWELGRFRSAIELDTPSMTAEQVAAIEQSV 161 (415)
T ss_pred ccCCCCCCCCeEEEEecHHHHhHHHHHhcchhHHHHHHHhhh---ccceeeeeccceeeccccCCCCccHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999 344445555677766654 789999999999999
Q ss_pred HHHHhcCCCEEEEEecHHHHHH-HHHhcCChhhHHHhhhcCCCCEEEEEECCceeeeeccccccccccccccceEEeecC
Q 046808 146 DRIIGRNLPLVREEVSRDEAKS-RIMAIKEPYKMEILESIIEDPITIYHIGEEWWDLCAGPHVETTGKINKKAVELEGDE 224 (653)
Q Consensus 146 ~~iI~~~~pI~~~~~~~~eA~~-~~~~~~~~~k~~ll~~~~~~~v~i~~ig~~~~d~c~G~hv~~Tg~i~~~~f~l~~~~ 224 (653)
|+.|..-+|+..++.+.+|-.- -....+.++. -.++||++.|++-....||||||.++++| +.++|.+.+
T Consensus 162 Ne~I~d~~~~~v~E~sl~d~eVeqVS~~~~~D~-------haG~iRvvnI~~vDSN~CCGTHvs~~Sdl--~vI~ILgte 232 (415)
T KOG2105|consen 162 NEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDD-------HAGPIRVVNIEGVDSNMCCGTHVSNLSDL--QVIKILGTE 232 (415)
T ss_pred HHHHHhccchheeecccCCcchhhccCCCCccc-------ccCceEEEeecCccCCccccccccchhhc--ceEEEeecc
Confidence 9999999999988887643211 1111222221 14789999998423356999999999999 999999554
Q ss_pred C
Q 046808 225 K 225 (653)
Q Consensus 225 k 225 (653)
+
T Consensus 233 k 233 (415)
T KOG2105|consen 233 K 233 (415)
T ss_pred c
Confidence 3
No 76
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.58 E-value=1.6e-14 Score=123.16 Aligned_cols=89 Identities=53% Similarity=0.853 Sum_probs=84.9
Q ss_pred CceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceee
Q 046808 555 PIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGT 633 (653)
Q Consensus 555 p~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~ 633 (653)
|++|+|++.+++..+.|.+++..||+.|++|++|+ ..++++++++|++.|+|++++||+++.+++.++++++.++++..
T Consensus 1 p~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~~~ 80 (91)
T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDLGS 80 (91)
T ss_pred CeEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccce
Confidence 78999999998899999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred eeHHHHHHHH
Q 046808 634 MKVDDFISRI 643 (653)
Q Consensus 634 v~~~el~~~i 643 (653)
++++++.+.+
T Consensus 81 ~~~~~~~~~~ 90 (91)
T cd00860 81 MSLDEFIEKL 90 (91)
T ss_pred EcHHHHHHHh
Confidence 9999987665
No 77
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.57 E-value=1.8e-14 Score=146.74 Aligned_cols=135 Identities=17% Similarity=0.107 Sum_probs=105.7
Q ss_pred cHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccccccc-ceecccCCceEEeccCChHHHHHHHHhhhccc
Q 046808 286 SIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENM-YDQMNIEDELYQLRPMNCPYHILVYQRKLQSY 364 (653)
Q Consensus 286 ~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~-y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~ 364 (653)
..-++.|++.+++.|++|||++|.||+||+.+++..++. +. ...+ +.+.|.+|+.++|||..|+++.++++...
T Consensus 7 ~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~-~~-~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~--- 81 (272)
T PRK12294 7 LIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHE-DL-QQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP--- 81 (272)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhcccc-ch-hhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC---
Confidence 345789999999999999999999999999999854332 22 2333 44456789999999999988888876532
Q ss_pred CCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEE-EEecCCc
Q 046808 365 RDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYE-VNLSTKP 440 (653)
Q Consensus 365 ~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~-v~l~~~~ 440 (653)
.-|.|+||+|+|||++. +|+|+|+|++|.. ..++ .|++.++.+++..+|..++. +.++|..
T Consensus 82 -~~~~Rl~Y~g~VfR~~~-----------~~~Q~GvEliG~~-~~a~--~e~l~la~~~l~~~g~~~~~~i~lGh~~ 143 (272)
T PRK12294 82 -TAATKVAYAGLIIRNNE-----------AAVQVGIENYAPS-LANV--QQSFKLFIQFIQQQLRDNVHFVVLGHYQ 143 (272)
T ss_pred -CCCceEEEeccEeccCC-----------CcceeceEEECCC-chhH--HHHHHHHHHHHHHhCCCCCcEEEeccHH
Confidence 24669999999999874 3799999999944 3444 58899999999999876543 6788754
No 78
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.54 E-value=5.8e-14 Score=148.30 Aligned_cols=138 Identities=16% Similarity=0.190 Sum_probs=111.5
Q ss_pred ccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcc--cccccccceecccCCceEEeccCChHHHHHHHHhh
Q 046808 283 PKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHL--DFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRK 360 (653)
Q Consensus 283 P~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~--~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~ 360 (653)
.....-++.+++.+++.|..+||++|.||+|++.+.+...++. ..+.++||.+. +.++|||+.+|.+.+++...
T Consensus 236 iG~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~e----e~lvLRPdLTPsLaR~La~N 311 (453)
T TIGR02367 236 EDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD----KNFCLRPMLAPNLYNYLRKL 311 (453)
T ss_pred cCcccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEec----CceEecccCHHHHHHHHHHh
Confidence 3344568999999999999999999999999877777655443 22457888863 36999999999988877653
Q ss_pred hcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 046808 361 LQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEV 434 (653)
Q Consensus 361 ~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v 434 (653)
.+ ...+|+|+|++|+|||+|.++ .| |+|||+|.+++++|.+....| +..++.++|+.||+ ++.+
T Consensus 312 ~~-~l~~PqKIFEIGkVFR~E~~~--~t--hlREF~QL~~eIaG~~atfaD----lealL~e~Lr~LGI-dfei 375 (453)
T TIGR02367 312 DR-ALPDPIKIFEIGPCYRKESDG--KE--HLEEFTMLNFCQMGSGCTREN----LEAIIKDFLDHLEI-DFEI 375 (453)
T ss_pred hh-hccCCeeEEEEcCeEecCCCC--CC--CcCeEEEEEEEEECCCCCHHH----HHHHHHHHHHHCCC-ceEE
Confidence 21 236899999999999999987 78 999999999999998877655 34689999999999 5655
No 79
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.52 E-value=1.4e-13 Score=118.08 Aligned_cols=89 Identities=34% Similarity=0.559 Sum_probs=84.1
Q ss_pred CceEEEEecCh---hhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCc
Q 046808 555 PIQARVLPVTD---TQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGE 630 (653)
Q Consensus 555 p~~v~Vi~~~~---~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~ 630 (653)
|++|+|++.++ .....|.++++.||+.|++|++|+ +.++++++++|++.|+|+++++|++|+++++|+++++++++
T Consensus 1 p~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~~~~~ 80 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTGE 80 (94)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEECCCCc
Confidence 67899999988 889999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred eeeeeHHHHHHHH
Q 046808 631 LGTMKVDDFISRI 643 (653)
Q Consensus 631 q~~v~~~el~~~i 643 (653)
+..++++++.+.+
T Consensus 81 ~~~~~~~~~~~~i 93 (94)
T cd00738 81 SETLHVDELPEFL 93 (94)
T ss_pred eeEEEHHHHHhhc
Confidence 9999999987654
No 80
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.48 E-value=3.1e-13 Score=143.52 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccc--ccccccceecccCCceEEeccCChHHHHHHHHhhhcccC
Q 046808 288 VRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLD--FYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYR 365 (653)
Q Consensus 288 l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~--~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~ 365 (653)
-...|++.+++.+..+||+||.||+|.+.+.|...++.. .+.+++|.+ ++.++|||+.+|.+...+... ..+.
T Consensus 205 ~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i----deel~LRpsLtPsLlr~la~n-~k~~ 279 (417)
T PRK09537 205 YLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV----DKNFCLRPMLAPGLYNYLRKL-DRIL 279 (417)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee----CCceEehhhhHHHHHHHHHhh-hhcc
Confidence 467899999999999999999999999999888776642 345678775 347999999999988877543 2345
Q ss_pred CCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEE
Q 046808 366 DFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVN 435 (653)
Q Consensus 366 ~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~ 435 (653)
++|+|+|++|+|||+|.++ .+ +++||+|.++.++|..... .++..++.++|+.||+ +|.+.
T Consensus 280 ~~P~RIFEIG~VFR~E~~g--~~--hlrEf~Ql~~~iiGs~~~f----~dL~~lleeLL~~LGI-~f~i~ 340 (417)
T PRK09537 280 PDPIKIFEIGPCYRKESDG--KE--HLEEFTMVNFCQMGSGCTR----ENLENIIDDFLKHLGI-DYEII 340 (417)
T ss_pred cCCeeEEEEeceEecCCCC--CC--CcceEEEEEEEEeCCchHH----HHHHHHHHHHHHHCCC-CcEEe
Confidence 7899999999999999876 66 9999999999999865433 4577999999999999 45554
No 81
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.37 E-value=2.7e-12 Score=142.65 Aligned_cols=147 Identities=15% Similarity=0.146 Sum_probs=117.1
Q ss_pred cCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCch-------------------hhhhhcCcc--c----c--
Q 046808 275 GGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKA-------------------DLWKISGHL--D----F-- 327 (653)
Q Consensus 275 ~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~-------------------~l~~~sg~~--~----~-- 327 (653)
.+| ++++|.....++.+.+.++++|..+||++|.+|.+|+. |+|..+... + .
T Consensus 222 ~~~-~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~ 300 (489)
T PRK04172 222 APP-PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVE 300 (489)
T ss_pred CCC-CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHH
Confidence 455 89999999999999999999999999999999999954 554433211 0 0
Q ss_pred -c------------ccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceece
Q 046808 328 -Y------------RENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRG 394 (653)
Q Consensus 328 -~------------~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~RE 394 (653)
+ .--+|.+.+..++.++|||.++++..+++..+ .+.|+|+|++|+|||+|.++ .+ |++|
T Consensus 301 ~v~~~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~----~~~p~rlFeiGrVFR~e~~d--~~--~l~E 372 (489)
T PRK04172 301 RVKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASR----PEPPQKYFSIGRVFRPDTID--AT--HLPE 372 (489)
T ss_pred HHHHHHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhc----CCCCeEEEEecceEcCCCCC--cc--cCCc
Confidence 0 01257777777889999998888877777652 35799999999999999987 67 8899
Q ss_pred eEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 046808 395 FTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEV 434 (653)
Q Consensus 395 F~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v 434 (653)
|+|.++.++|.+-. +.++..++.+++..||++.+.+
T Consensus 373 f~ql~~~i~G~~~~----f~elkg~l~~ll~~lGi~~~~~ 408 (489)
T PRK04172 373 FYQLEGIVMGEDVS----FRDLLGILKEFYKRLGFEEVKF 408 (489)
T ss_pred hheEEEEEEeCCCC----HHHHHHHHHHHHHHhCCceEEE
Confidence 99999999997422 3688999999999999964444
No 82
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.26 E-value=4.9e-11 Score=101.02 Aligned_cols=87 Identities=28% Similarity=0.466 Sum_probs=81.3
Q ss_pred eEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeee
Q 046808 557 QARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMK 635 (653)
Q Consensus 557 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~ 635 (653)
+|+|++.+++....|.+++..||+.|++|+++. ..++++++++|++.|+|+++++|+++..+++++++++.++++..++
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~~ 82 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQETVA 82 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCCCcEEEe
Confidence 688999998888999999999999999999998 7899999999999999999999999989999999999999999999
Q ss_pred HHHHHHHH
Q 046808 636 VDDFISRI 643 (653)
Q Consensus 636 ~~el~~~i 643 (653)
++++.+.+
T Consensus 83 ~~~~~~~~ 90 (91)
T cd00859 83 LDELVEEL 90 (91)
T ss_pred HHHHHHHh
Confidence 99887665
No 83
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=98.99 E-value=4.9e-10 Score=81.20 Aligned_cols=42 Identities=40% Similarity=0.722 Sum_probs=34.4
Q ss_pred EEEEEECCc-eeeeeccccccccccccccceEEe-ecCCccceeeec
Q 046808 189 ITIYHIGEE-WWDLCAGPHVETTGKINKKAVELE-GDEKKPMLQRIY 233 (653)
Q Consensus 189 v~i~~ig~~-~~d~c~G~hv~~Tg~i~~~~f~l~-~~~k~~~l~Ri~ 233 (653)
||+|++| + +.|+|+||||+|||+| +.|+|. ++++++.++|+|
T Consensus 1 vRvv~i~-~~~~~~C~GtHv~~T~~i--~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIG-DFDVDLCGGTHVPNTGEI--GHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEET-TTEEEEESS---SBGGGG---CEEEEEEEEEETTEEEEE
T ss_pred CEEEEEC-CeeEECCCCcccCChhEE--CcEEEEEeEEEcCCcEEeC
Confidence 7999999 6 8899999999999999 999998 666788999986
No 84
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.99 E-value=1.5e-08 Score=110.05 Aligned_cols=148 Identities=13% Similarity=0.137 Sum_probs=101.4
Q ss_pred eecCccccHHHHHHHHHHHHHHHhcCCeEEecC-ccCchhhh------hhcCcccccccccceecc--------------
Q 046808 279 VFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTP-HVAKADLW------KISGHLDFYRENMYDQMN-------------- 337 (653)
Q Consensus 279 ~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP-~le~~~l~------~~sg~~~~~~~~~y~~~d-------------- 337 (653)
....+....-...+.+.++++|...||+++.+| .++ .+.| .-..|-..=..+.|-+.+
T Consensus 221 ~~~~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ve-s~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~ 299 (494)
T PTZ00326 221 KKIGGGNLHPLLKVRREFREILLEMGFEEMPTNRYVE-SSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYV 299 (494)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHhCCCEEecCCCCcc-ccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHH
Confidence 344455566678889999999999999999887 443 2222 222332111122333321
Q ss_pred -----------------------cCCceEEeccCChHHHHHHHHhhhccc---CC-CCcEEEEeeeeeecCCCCCCCCcc
Q 046808 338 -----------------------IEDELYQLRPMNCPYHILVYQRKLQSY---RD-FPIRVAELGTVYRYELSGSLHGLF 390 (653)
Q Consensus 338 -----------------------~~~~~l~LrP~~~~~~~~~~~~~~~s~---~~-lP~rl~~~g~~fR~E~~~~~~GL~ 390 (653)
...+.++||+-+++...+++......+ .. .|+|++++|+|||+|..+ .+
T Consensus 300 ~~Vk~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~D--at-- 375 (494)
T PTZ00326 300 ERVKKVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLD--AT-- 375 (494)
T ss_pred HHHHHHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCC--CC--
Confidence 112478999977666666665543221 12 399999999999999988 78
Q ss_pred eeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEE
Q 046808 391 RVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVN 435 (653)
Q Consensus 391 R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~ 435 (653)
+++||+|+|+.+++..-. +++++.++.++|+++|+....++
T Consensus 376 H~~eFhQ~Eg~vi~~~~s----~~~L~~~l~~f~~~lG~~~~Rfr 416 (494)
T PTZ00326 376 HLAEFHQVEGFVIDRNLT----LGDLIGTIREFFRRIGITKLRFK 416 (494)
T ss_pred cCceeEEEEEEEEeCCCC----HHHHHHHHHHHHHhcCCCceEEe
Confidence 999999999999987752 25789999999999998544443
No 85
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=8.8e-08 Score=111.12 Aligned_cols=331 Identities=17% Similarity=0.204 Sum_probs=197.9
Q ss_pred eecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCC-hHHHHHHH
Q 046808 279 VFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMN-CPYHILVY 357 (653)
Q Consensus 279 ~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~-~~~~~~~~ 357 (653)
..+.+.-..+++.+...+-++|+++|+.++.||.+... .+.. .+..+.+.+.|.+|..+.|...- .|.++.+.
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~---~~~~---~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs 998 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLR---NACA---YFSRKAVELLDHSGDVVELPYDLRLPFARYVS 998 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccc---cccc---hhccceeeeecCCCCEEEeeccccchHHHHhh
Confidence 45677788899999999999999999999999955332 2221 23567788999999999998854 56665555
Q ss_pred HhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHH-cCCCeEEEEe
Q 046808 358 QRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQ-FGFNKYEVNL 436 (653)
Q Consensus 358 ~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~-lGl~~~~v~l 436 (653)
++.. +-+|.|.++.|||.+... +. +|+++++++|+|.....-+ +|++.++.+|... |-=.++.+.+
T Consensus 999 ~N~~-----~~~Kry~i~rVyr~~~~~--hP----~~~~ec~fDii~~t~sl~~--AE~L~vi~Ei~~~~l~~~n~~i~l 1065 (1351)
T KOG1035|consen 999 RNSV-----LSFKRYCISRVYRPAIHN--HP----KECLECDFDIIGPTTSLTE--AELLKVIVEITTEILHEGNCDIHL 1065 (1351)
T ss_pred hchH-----HHHHHhhhheeecccccC--CC----ccccceeeeEecCCCCccH--HHHHHHHHHHHHHHhccCceeEEe
Confidence 5543 458999999999988732 34 8999999999988766667 5899999888866 2223678888
Q ss_pred cCCcc-----cccCCchh-------------------------HHHH------HHHHHH---------------------
Q 046808 437 STKPE-----KAVGGDDI-------------------------WEKA------TSALRD--------------------- 459 (653)
Q Consensus 437 ~~~~~-----~~~g~~~~-------------------------~~~~------~~~l~~--------------------- 459 (653)
||..+ ...|.++. |... ...+..
T Consensus 1066 nH~~LL~Ai~~~~~i~~~~r~~v~~~l~~~~~~r~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 1145 (1351)
T KOG1035|consen 1066 NHADLLEAILSHCGIPKDQRRKVAELLSDMGSSRPQRSEKELKWVFIRRSSLQLAKLPEFVLNRLFLVAGRFQALKLIRG 1145 (1351)
T ss_pred ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccHHHHHHHHhhhhHHHHHhhhhHHHHHhhhhhhhcchhhhHHHhh
Confidence 88543 22333311 1000 000000
Q ss_pred ---------HHH----------hcCCceEEcCCCcccccceeeEEEecccCCcccccc--------eEEEecCCcccccE
Q 046808 460 ---------ALD----------DKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCST--------IQVDFNLPQRFDIV 512 (653)
Q Consensus 460 ---------~l~----------~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~--------i~~d~~~~~r~d~~ 512 (653)
+|+ ..|+.+.+-- |.|+. ....+..|..|++-. .-.....|+|||..
T Consensus 1146 ~~~~~~~vr~L~eLe~~~~~~~~~~i~~~~~i----~~g~~--~~~~~~~g~~~qi~a~~~~~~~~~~~~la~GgRyd~~ 1219 (1351)
T KOG1035|consen 1146 KLRADSLVRALKELENVVGLLRSLGIEEHVHI----YVGPT--ESRHRNGGIQFQITAEIKSNTSGDPVLLAAGGRYDSL 1219 (1351)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccccceEE----eeccc--eeEEcCCcEEEEEeecccCCCcCCceeeecccchHHH
Confidence 000 0011100000 00110 001112222222100 00222457899842
Q ss_pred ---EECCCCCcccCEEEEecccCchHHHHHHHHHhh-cC-CCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEE
Q 046808 513 ---YVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHY-AG-DFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI 587 (653)
Q Consensus 513 ---~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~-~~-~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~ 587 (653)
+.+.. ....| + ++ | +. .+.-...+. .+ ..+......+|.|+..+......+..|+++||+.||++++
T Consensus 1220 ~~~~~~~~-~~~~p--~--a~-g-v~-~~~~~~~~~~~~~~~~~~~~~cdvlics~g~~l~t~~~~l~~~LWs~gI~a~i 1291 (1351)
T KOG1035|consen 1220 LQEVRDEQ-KMNLP--G--AI-G-VS-ALSTIRQHAPKDLEPIKTPSSCDVLICSRGSGLLTQRMELVAKLWSKGIKAEI 1291 (1351)
T ss_pred HHHhhhhh-hhcCc--c--cc-e-eh-hhHHHHHhhhccccCCCCcccccEEEEecCCchHHHHHHHHHHHHHcCcccce
Confidence 22211 11122 2 12 2 22 111111110 11 2232234578999999988888999999999999999999
Q ss_pred eC--CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCce--eeeeHHHHHHHHHHHH
Q 046808 588 CH--GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGEL--GTMKVDDFISRIKSAT 647 (653)
Q Consensus 588 d~--~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q--~~v~~~el~~~i~~~~ 647 (653)
-. +........+|+.--|.+++++- ++.+.||.+.-..+ ..+-..||++++.+.+
T Consensus 1292 ~~~~s~~~~e~~e~~~~~~i~~iliv~-----n~~~~vks~~~e~~se~~~~~~elv~f~~~~~ 1350 (1351)
T KOG1035|consen 1292 VPDPSPSLEELTEYANEHEITCILIVT-----NQKEKVKSFELERKSEKVVGRTELVEFLLQAL 1350 (1351)
T ss_pred eeCCCcchHHHHHHHhcCceEEEEEEe-----cceeeechhHHhhhhhhhhhHHHHHHHHHHhh
Confidence 76 67888888888888888887765 66777777643322 3344567777766543
No 86
>PRK09350 poxB regulator PoxA; Provisional
Probab=98.69 E-value=3.2e-08 Score=103.51 Aligned_cols=110 Identities=13% Similarity=0.032 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc-cCCceEEec--cCChHHHHHHHHhhhc
Q 046808 286 SIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN-IEDELYQLR--PMNCPYHILVYQRKLQ 362 (653)
Q Consensus 286 ~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d-~~~~~l~Lr--P~~~~~~~~~~~~~~~ 362 (653)
.+++..|.+.+++.|.++||.+|.||+|+...+.. .+...+..+ |.+.| ..|+.++|+ |+.+ +.+++...
T Consensus 5 l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~--~~~~~f~~~-y~~~~~~~~~~~~L~~SPe~~--~kr~la~~-- 77 (306)
T PRK09350 5 LLKRAKIIAEIRRFFADRGVLEVETPILSQATVTD--IHLVPFETR-FVGPGASQGKTLWLMTSPEYH--MKRLLAAG-- 77 (306)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCC--ccCCceeee-eccccccCCcceEEecCHHHH--HHHHhhcc--
Confidence 56889999999999999999999999998765432 222223323 44334 568889999 6543 23222221
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCc-hhHHH
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE-DQIKD 411 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~-~~~~d 411 (653)
+ -|+||+|+|||+|.+. .+ +..||+|.|+|..+.+ +...+
T Consensus 78 ----~-~rvf~i~~~FR~e~~~--~~--H~~EFt~lE~y~~~~d~~dlm~ 118 (306)
T PRK09350 78 ----S-GPIFQICKSFRNEEAG--RY--HNPEFTMLEWYRPHYDMYRLMN 118 (306)
T ss_pred ----c-cceEEecceeecCCCC--CC--CCcHHHhhhhhhhCCCHHHHHH
Confidence 2 2999999999999985 67 9999999999976553 33444
No 87
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.52 E-value=6.1e-07 Score=91.99 Aligned_cols=111 Identities=15% Similarity=0.039 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc-cCCceEEeccCChHHHHHHHHhhhcccC
Q 046808 287 IVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN-IEDELYQLRPMNCPYHILVYQRKLQSYR 365 (653)
Q Consensus 287 ~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~~s~~ 365 (653)
+++..|.+.+++.|.++||.+|.||+|+.... .++ .+.|.+.- ..|+.+.|+-...-....+....
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~---~~~-----~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~----- 68 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITG---GAG-----ARPFLVKYNALGLDYYLRISPQLFKKRLMVGG----- 68 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccCC---ccc-----cceEEeeecCCCCcEEeecCHHHHHHHHHhcC-----
Confidence 57899999999999999999999999986521 111 23455521 24788899832222222222111
Q ss_pred CCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee-eCchhHHHHHHHH
Q 046808 366 DFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF-CLEDQIKDEIRAV 416 (653)
Q Consensus 366 ~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if-g~~~~~~d~~~e~ 416 (653)
+ -|+|++|+|||+|..+ .+ +++||+|.|+|.- .+-+...+...++
T Consensus 69 -~-~~vf~i~~~fR~e~~~--~~--hl~EF~~le~e~~~~~~~dvm~~~e~l 114 (269)
T cd00669 69 -L-DRVFEINRNFRNEDLR--AR--HQPEFTMMDLEMAFADYEDVIELTERL 114 (269)
T ss_pred -C-CcEEEEecceeCCCCC--CC--cccceeEEEEEEecCCHHHHHHHHHHH
Confidence 2 2999999999999554 67 9999999999964 4334444433333
No 88
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=5e-07 Score=98.90 Aligned_cols=233 Identities=18% Similarity=0.140 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEecCCcc-----------cc-----cCCchh-------HHHHHHHHHHHHHhcCCceEE
Q 046808 414 RAVLDLTEEILLQFGFNKYEVNLSTKPE-----------KA-----VGGDDI-------WEKATSALRDALDDKGWDYQI 470 (653)
Q Consensus 414 ~e~l~~~~~il~~lGl~~~~v~l~~~~~-----------~~-----~g~~~~-------~~~~~~~l~~~l~~~g~~~~~ 470 (653)
-.+.......++.|-|.-|+|.---|.+ .+ ...... +.+..+.+.+++..+|+.+..
T Consensus 115 t~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~~i~l~~~~ 194 (500)
T COG0442 115 TDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIFLRLPLIFGP 194 (500)
T ss_pred HHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCceEEe
Confidence 4667777888899988777775332221 11 111111 222334555666677777665
Q ss_pred cCCCcccccc--eeeEEEecccCCcccccceEEEec--CCccc-ccEEECCC-CCcccCEEEEecccCchHHHHHHHHHh
Q 046808 471 DEGGGAFYGP--KIDLKIEDALGRKWQCSTIQVDFN--LPQRF-DIVYVDSN-SEKKRPIMIHRAVLGSLERFFGVLIEH 544 (653)
Q Consensus 471 ~~~~~~~~g~--~~d~~~~d~~g~~~~~~~i~~d~~--~~~r~-d~~~~~~~-g~~~~p~~g~~~i~GgieRli~~L~e~ 544 (653)
-+...-|-|. ..+|.++..-|...++++++ +|. +..-+ ++.|.+.. +....++.-++++ -+|.+++++..
T Consensus 195 ~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~-~y~aN~e~a~~~~~~~~~~~~~~~~v~t~s~~~---s~r~~~~~i~i 270 (500)
T COG0442 195 VPADEGFIGGSYSHEFEALMPDGGEDQIATSH-HYGANFEKAFIDIKFEDEEEGELEYVHTTSYGI---STRIIGAAILI 270 (500)
T ss_pred ecccCCCCCCccceEEEEEccCCCccEEEEec-chHHhHHHhccCCCccccccccceEecccceEE---EeeeeeEEEEE
Confidence 4432223222 12344433224455666553 221 12334 55566555 4444455444443 56777776665
Q ss_pred hcC----CCCCCCCCceEEEEecCh-------hhHHHHHHHHHHHHhCCCeEEEeC--CCCHHHHHHHHHHcCCCEEEEE
Q 046808 545 YAG----DFPLWLSPIQARVLPVTD-------TQLEYCNEVIKKLKTNGIRAEICH--GERLPKLIRNAEKQKIPLMAVV 611 (653)
Q Consensus 545 ~~~----~~P~~lap~~v~Vi~~~~-------~~~~~a~~la~~Lr~~Gi~v~~d~--~~~~~kk~~~A~~~gip~~iii 611 (653)
+|+ ..|+.++|.||.++|... ...+++.+++..|...+++++.|. ....|.|+..|+-+|+|.++-+
T Consensus 271 ~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieVghif~l 350 (500)
T COG0442 271 HGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEVGHIFEL 350 (500)
T ss_pred ecCCCCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCceeeeeeccccCEEEEE
Confidence 553 789999999999998752 257788899999999999999995 6899999999999999999999
Q ss_pred CcccccCCeEEEEECCCCc--eeeeeHHHHHHH-HHHHHhhh
Q 046808 612 GAKEVDAQTVTVRSRFGGE--LGTMKVDDFISR-IKSATENR 650 (653)
Q Consensus 612 G~~e~~~~~V~vk~~~~~~--q~~v~~~el~~~-i~~~~~~~ 650 (653)
|.+..++.++++.++++.+ ....+....+.. +...+++.
T Consensus 351 G~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~ 392 (500)
T COG0442 351 GTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQI 392 (500)
T ss_pred CchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHHh
Confidence 9999999999999999999 778889998888 77777754
No 89
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=98.40 E-value=2.7e-07 Score=67.11 Aligned_cols=42 Identities=38% Similarity=0.635 Sum_probs=33.9
Q ss_pred EEEEEECCce-eeeeccccccccccccccceEEeecCC-ccceeeec
Q 046808 189 ITIYHIGEEW-WDLCAGPHVETTGKINKKAVELEGDEK-KPMLQRIY 233 (653)
Q Consensus 189 v~i~~ig~~~-~d~c~G~hv~~Tg~i~~~~f~l~~~~k-~~~l~Ri~ 233 (653)
||+|.+| ++ .++|+||||+||++| +.|+|.+.+. ...++|++
T Consensus 1 vriv~i~-~~~~~~C~GtHv~~t~~I--~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIG-DFDVELCGGTHVPNTGEI--GAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEEC-CEEEECCCCcccCChhhC--cEEEEEEEeeeecCeEEeC
Confidence 5899999 76 789999999999999 9999995543 33456653
No 90
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=5.4e-07 Score=97.16 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=75.7
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhc-
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQ- 362 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~- 362 (653)
.-..+|.++...+|+.+...||.+|+||+|..+.- +.-++-+-.---..|+=|+| |-+. .+|++.+.
T Consensus 139 ~~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTP-------EGARDfLVPSRv~~G~FYAL-PQSP----QlfKQLLMv 206 (585)
T COG0173 139 KNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTP-------EGARDFLVPSRVHPGKFYAL-PQSP----QLFKQLLMV 206 (585)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEeecCccccCCC-------ccccccccccccCCCceeec-CCCH----HHHHHHHHH
Confidence 34578999999999999999999999999955421 11111111100012445555 3222 33444332
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEccee-eeeCchhHHHHHHHHHH
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAH-IFCLEDQIKDEIRAVLD 418 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~-ifg~~~~~~d~~~e~l~ 418 (653)
+. + =|+|||.+|||+|..- .- |.-||||.|+| +|++.+...+..++++.
T Consensus 207 sG--f-dRYyQIarCFRDEDlR--aD--RQPEFTQiD~EmSF~~~edv~~~~E~l~~ 256 (585)
T COG0173 207 AG--F-DRYYQIARCFRDEDLR--AD--RQPEFTQIDLEMSFVDEEDVMELIEKLLR 256 (585)
T ss_pred hc--c-cceeeeeeeecccccc--cc--cCCcceeEeEEeecCCHHHHHHHHHHHHH
Confidence 11 1 2899999999999864 45 88899999999 58888877776554444
No 91
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.27 E-value=1.7e-05 Score=80.12 Aligned_cols=136 Identities=16% Similarity=0.190 Sum_probs=95.9
Q ss_pred ccccHHHHHHHHHHHHHHHhcCCeEEecCccCc-hhhhhhcC----cccccccccceecc-cC--CceEEeccCChHHHH
Q 046808 283 PKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAK-ADLWKISG----HLDFYRENMYDQMN-IE--DELYQLRPMNCPYHI 354 (653)
Q Consensus 283 P~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~-~~l~~~sg----~~~~~~~~~y~~~d-~~--~~~l~LrP~~~~~~~ 354 (653)
+....-.+.+.+.+++.|...||+++..|.++. ...|.+-. |...-..+.|.+.+ .. .+..+||..++|...
T Consensus 13 ~G~~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~ 92 (247)
T PF01409_consen 13 PGRLHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQL 92 (247)
T ss_dssp CSBTSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHH
Confidence 344556788999999999999999999999965 33444332 22111123344433 23 578999998888776
Q ss_pred HHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHc-CCC
Q 046808 355 LVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQF-GFN 430 (653)
Q Consensus 355 ~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~l-Gl~ 430 (653)
+.. .+.++.|+|++++|+|||.|... .- .+.+|+|.|.-+.+..-.. ..+......+++.| |..
T Consensus 93 ~~l----~~~~~~p~kif~iG~VyR~D~~D--~t--h~~~f~Qleg~~~~~~~~f----~~Lk~~l~~l~~~lfG~~ 157 (247)
T PF01409_consen 93 RTL----NKHRPPPIKIFEIGKVYRRDEID--AT--HLPEFHQLEGLVVDKNVTF----EDLKGTLEELLKELFGID 157 (247)
T ss_dssp HHH----TTTSHSSEEEEEEEEEESSSCSB--SS--BESEEEEEEEEEEETTE-H----HHHHHHHHHHHHHHHTTT
T ss_pred HHH----HHhcCCCeEEEecCceEecCCcc--cc--cCccceeEeeEEEecccch----hHHHHHHHHHHHHHhhcc
Confidence 666 23346899999999999999865 22 6789999999887765333 34677888888888 985
No 92
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=98.25 E-value=6.5e-06 Score=84.96 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCC
Q 046808 287 IVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRD 366 (653)
Q Consensus 287 ~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~ 366 (653)
+++..|.+.+|+.|.+.||.+|.||+|.....- |.-+ |....+ ...+..+.|+-. .. ++++.+... .
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~---g~~~-f~~~~~---~~~~~~~~L~~S-pq----l~lk~ll~~-g 68 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTPE---GARD-FLVPSR---LHPGKFYALPQS-PQ----LFKQLLMVS-G 68 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCCC---CCCC-ceeccc---cCCCceeecccC-HH----HHHHHHHhc-C
Confidence 578999999999999999999999999754321 1111 111111 112344556522 21 233322111 1
Q ss_pred CCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCc-hhHHHHHHHHHH
Q 046808 367 FPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE-DQIKDEIRAVLD 418 (653)
Q Consensus 367 lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~-~~~~d~~~e~l~ 418 (653)
+ =|+|++|+|||+|.++ .+ |..||+|.|+|.-..+ +...+..++++.
T Consensus 69 ~-~~v~~i~~~fR~e~~~--~~--r~~Ef~~~e~e~~~~~~~dlm~~~e~li~ 116 (280)
T cd00777 69 F-DRYFQIARCFRDEDLR--AD--RQPEFTQIDIEMSFVDQEDIMSLIEGLLK 116 (280)
T ss_pred c-CcEEEeccceeCCCCC--CC--ccceeEEeEeeeccCCHHHHHHHHHHHHH
Confidence 2 3899999999999987 67 8899999999975443 455554444443
No 93
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.20 E-value=1e-05 Score=85.44 Aligned_cols=115 Identities=17% Similarity=0.257 Sum_probs=75.8
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.-.+++..|.+.+++.|.++||.+|.||+|+.... .++.+ .|.+ +--|+.+.|+...+-..-.+...
T Consensus 22 ~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~---e~~~~-----~f~~-~~~~~~~yL~~Spql~lk~l~~~---- 88 (322)
T cd00776 22 AIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT---EGGAE-----LFKV-SYFGKPAYLAQSPQLYKEMLIAA---- 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC---CccCC-----cccc-ccCCCcceecCCHHHHHHHHHHh----
Confidence 44678999999999999999999999999987321 12222 2332 22356777864433222222211
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeC-c-hhHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-E-DQIKDEIRAVLD 418 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~-~-~~~~d~~~e~l~ 418 (653)
+ =|+|++|+|||+|.+.. . -..-||+|.|+|..+. + +...+...+++.
T Consensus 89 ---~-~~vf~i~~~FR~E~~~~-~--rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~ 138 (322)
T cd00776 89 ---L-ERVYEIGPVFRAEKSNT-R--RHLSEFWMLEAEMAFIEDYNEVMDLIEELIK 138 (322)
T ss_pred ---h-hhhEEeccccccCCCCc-C--CCcceeeccceeeeccCCHHHHHHHHHHHHH
Confidence 1 38899999999998651 1 2578999999997755 2 445554444444
No 94
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=98.16 E-value=1.6e-05 Score=81.31 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=84.8
Q ss_pred CceEEEEecChhhH-HHHHHHHHHHHhCCCeEEEeC--CCCHHHHHHHHHHcCCCEEEEECccc------ccCCeEEEEE
Q 046808 555 PIQARVLPVTDTQL-EYCNEVIKKLKTNGIRAEICH--GERLPKLIRNAEKQKIPLMAVVGAKE------VDAQTVTVRS 625 (653)
Q Consensus 555 p~~v~Vi~~~~~~~-~~a~~la~~Lr~~Gi~v~~d~--~~~~~kk~~~A~~~gip~~iiiG~~e------~~~~~V~vk~ 625 (653)
..||+|+.++...+ ....+|++.|+++||++++-. ..++...+.+|...||+++|||-.++ -..+.|.||+
T Consensus 5 RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~lKVK~ 84 (273)
T PF12745_consen 5 RCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPLKVKS 84 (273)
T ss_pred cceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCceEEec
Confidence 45899999988776 889999999999999999943 56999999999999999999997654 2234599999
Q ss_pred CCCCceeeeeHHHHHHHHHHHHhhhc
Q 046808 626 RFGGELGTMKVDDFISRIKSATENRT 651 (653)
Q Consensus 626 ~~~~~q~~v~~~el~~~i~~~~~~~~ 651 (653)
+.++++..|+.+||+.++...++.+.
T Consensus 85 l~~~~e~dv~~~eLv~~l~~ei~~r~ 110 (273)
T PF12745_consen 85 LEKKKETDVDRDELVDWLQQEIRERN 110 (273)
T ss_pred cCCCcccccCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999987763
No 95
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.09 E-value=0.0001 Score=77.07 Aligned_cols=144 Identities=15% Similarity=0.167 Sum_probs=98.1
Q ss_pred ccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchh-hhhhc----CcccccccccceecccCCceEEeccC
Q 046808 274 AGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKAD-LWKIS----GHLDFYRENMYDQMNIEDELYQLRPM 348 (653)
Q Consensus 274 ~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~-l~~~s----g~~~~~~~~~y~~~d~~~~~l~LrP~ 348 (653)
+.+| +.+.+-...-.+.+.+.++++|...||+++.+|.+++.. .|.+- .|...=..+.|.+ ++..+||..
T Consensus 96 t~p~-~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI----~~~~lLRTh 170 (339)
T PRK00488 96 TLPG-RRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI----DDGLLLRTH 170 (339)
T ss_pred cCCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE----cCCceeecc
Confidence 4455 444555566788999999999999999999999998543 33222 2221111234444 345889998
Q ss_pred ChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHc-
Q 046808 349 NCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQF- 427 (653)
Q Consensus 349 ~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~l- 427 (653)
+.|...+...+ ...|+|++.+|+|||++...++ +..+|+|.+.-+++..-.. .++......+++.+
T Consensus 171 TSp~qir~L~~-----~~~Pirif~~G~VyR~D~~Dat----H~~~FhQleglvvd~~vtf----~dLK~~L~~fl~~~f 237 (339)
T PRK00488 171 TSPVQIRTMEK-----QKPPIRIIAPGRVYRNDSDDAT----HSPMFHQVEGLVVDKNISF----ADLKGTLEDFLKAFF 237 (339)
T ss_pred CcHHHHHHHHh-----cCCCeEEEEeeeEEEcCCCCcc----cCcceeeEEEEEEeCCCCH----HHHHHHHHHHHHHHc
Confidence 88876665544 3689999999999999874422 7789999999888765433 34556666677765
Q ss_pred CCCeEEEEe
Q 046808 428 GFNKYEVNL 436 (653)
Q Consensus 428 Gl~~~~v~l 436 (653)
| ++..+++
T Consensus 238 g-~~~~~R~ 245 (339)
T PRK00488 238 G-EDVKIRF 245 (339)
T ss_pred C-CCCeEEe
Confidence 4 2344443
No 96
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=0.0004 Score=72.22 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=95.3
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCch-----hhhhhcCcccccccccceecccCCceEEecc
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKA-----DLWKISGHLDFYRENMYDQMNIEDELYQLRP 347 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~-----~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP 347 (653)
...+|. .+.|.+......+.+.++++|...||+++..|.+|.. .|+.-..|-..=..+.|-+.+..+ .+.||-
T Consensus 98 v~lp~~-~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~-~~lLRT 175 (335)
T COG0016 98 VTLPGR-RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDRE-KLLLRT 175 (335)
T ss_pred cCCCCc-cCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCC-ceeecc
Confidence 344554 5566677788889999999999999999999976532 122222332211234455543323 578998
Q ss_pred CChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHc
Q 046808 348 MNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQF 427 (653)
Q Consensus 348 ~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~l 427 (653)
-|++.-.+...+.. +-|+|++..|+|||+|.-.++ ...+|+|.|.-+++..-... .+..+..++++++
T Consensus 176 HTs~vq~R~l~~~~----~~P~k~~~~grvyR~D~~DaT----Hs~~FhQiEGlvvd~~~s~~----~Lkg~L~~f~~~~ 243 (335)
T COG0016 176 HTSPVQARTLAENA----KIPIKIFSPGRVYRNDTVDAT----HSPEFHQIEGLVVDKNISFA----DLKGTLEEFAKKF 243 (335)
T ss_pred cCcHhhHHHHHhCC----CCCceEecccceecCCCCCcc----cchheeeeEEEEEeCCccHH----HHHHHHHHHHHHh
Confidence 65554444443321 239999999999999966533 56899999997766554433 4677888888887
Q ss_pred CC
Q 046808 428 GF 429 (653)
Q Consensus 428 Gl 429 (653)
+-
T Consensus 244 fg 245 (335)
T COG0016 244 FG 245 (335)
T ss_pred cC
Confidence 63
No 97
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.02 E-value=0.00011 Score=73.32 Aligned_cols=125 Identities=12% Similarity=0.081 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHhcCCeEEecCccCchh-hhhhcCccccc-c---cccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 289 RHIIEDFWKKSHIEHDYDLLYTPHVAKAD-LWKISGHLDFY-R---ENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 289 ~~~I~~~~~~~~~~~G~~~I~tP~le~~~-l~~~sg~~~~~-~---~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.+.+.+.+++.+...||+|+.|++|.+.+ .+..-+..+.- . ...+.+.+.- .-+|||+..|.+......+
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~--~~~LR~sLlp~LL~~l~~N--- 77 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA--RLLLRTHTSAVQARALAKL--- 77 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc--eEEEeccCcHHHHHHHHhc---
Confidence 45678889999999999999999998773 34322211100 0 0122332221 5689999999877666654
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcC
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFG 428 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lG 428 (653)
..|+|+|++|+|||.+..+ .+ +..||+|.++.+.|.+- + +.++......+++.+|
T Consensus 78 --~~~~~lFEiG~Vf~~~~~~--~~--~~~E~~~l~~~~~g~~~---d-f~dlkg~ve~ll~~l~ 132 (218)
T cd00496 78 --KPPIRIFSIGRVYRNDEID--AT--HLPEFHQIEGLVVDKGL---T-FADLKGTLEEFAKELF 132 (218)
T ss_pred --CCCeeEEEEcCeEECCCCC--CC--cCCccEEEEEEEECCCC---C-HHHHHHHHHHHHHHhc
Confidence 5799999999999987643 23 45599999999888532 2 3578888899999998
No 98
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=98.00 E-value=3.3e-05 Score=86.77 Aligned_cols=115 Identities=18% Similarity=0.251 Sum_probs=74.0
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc--cCCceEEeccCChHHHHHHHHhhh
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN--IEDELYQLRPMNCPYHILVYQRKL 361 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d--~~~~~l~LrP~~~~~~~~~~~~~~ 361 (653)
.-.+++..|...+|+.|...||.||.||+|.... .++. .+ |.+.. ..+.-|+|+ .+.+ +|++.+
T Consensus 136 ~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~----~eGa---r~--f~vp~~~~~~~~y~L~-qSpQ----lykq~l 201 (583)
T TIGR00459 136 QRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKST----PEGA---RD--YLVPSRVHKGEFYALP-QSPQ----LFKQLL 201 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeccCC----CCCC---cc--eeeeeecCCCceeecC-CCHH----HHHHHH
Confidence 3457899999999999999999999999997532 1111 11 11111 134445565 2222 233322
Q ss_pred cccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCchhHHHHHHHHHH
Q 046808 362 QSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRAVLD 418 (653)
Q Consensus 362 ~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~~~~~d~~~e~l~ 418 (653)
.. ..+ =|+||+|+|||+|... .. |--||||.|+|. |.+-+...+..++++.
T Consensus 202 ~v-~G~-ervfqI~~~FR~E~~~--t~--r~pEFT~le~E~af~d~~dvm~~~E~li~ 253 (583)
T TIGR00459 202 MV-SGV-DRYYQIARCFRDEDLR--AD--RQPEFTQIDMEMSFMTQEDVMELIEKLVS 253 (583)
T ss_pred Hh-ccc-CcEEEEcceeeCCCCC--CC--CCcccCcceeeecCCCHHHHHHHHHHHHH
Confidence 11 112 3899999999999987 56 889999999995 4444555555444444
No 99
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=97.98 E-value=0.00015 Score=75.49 Aligned_cols=131 Identities=13% Similarity=0.092 Sum_probs=93.2
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCch-hhhhhcC----cccccccccceecccCCceEEeccCChHHHHHHHH
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKA-DLWKISG----HLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQ 358 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~-~l~~~sg----~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~ 358 (653)
....-.+.+.+.+++.+...||+|+.+|.+++. ..+..-+ |...-..+.|.+. +.-+||+.+.|+..+...
T Consensus 69 g~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~----d~~vLRtsl~p~ll~~l~ 144 (294)
T TIGR00468 69 GSLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK----DRLLLRTHTTAVQLRTME 144 (294)
T ss_pred CCcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec----CCcceecccHHHHHHHHH
Confidence 355567888889999999999999999999876 3443221 1110001334443 457899999998777776
Q ss_pred hhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 359 RKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 359 ~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
.+.. .|+|++++|+|||.+... .. +..||+|.++-+.+..- + +.++......++..+|++
T Consensus 145 ~N~~----~pirlFEiGrVfr~d~~d--~~--~~pef~ql~gl~~~~~~---~-f~dLKg~le~ll~~l~~~ 204 (294)
T TIGR00468 145 ENEK----PPIRIFSPGRVFRNDTVD--AT--HLPEFHQVEGLVIDKNV---S-FTNLKGFLEEFLKKMFGE 204 (294)
T ss_pred hcCC----CCceEEEecceEEcCCCC--Cc--cCChhhEEEEEEECCCC---C-HHHHHHHHHHHHHHhCCC
Confidence 6532 799999999999987643 12 35599999988776321 2 356778888999999984
No 100
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=97.95 E-value=2.2e-05 Score=82.15 Aligned_cols=108 Identities=16% Similarity=0.058 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceec----ccCCceEEeccCChHHHHHHHHhhhc
Q 046808 287 IVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM----NIEDELYQLRPMNCPYHILVYQRKLQ 362 (653)
Q Consensus 287 ~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~----d~~~~~l~LrP~~~~~~~~~~~~~~~ 362 (653)
+++..|.+.+++.+.++||.+|.||+|+....-. ++.+ .|++. +..+...+|+-..+-..-++..
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e--~~~~-----~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~---- 70 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPVTD--PHLD-----AFATEFLGPDGEGRPLYLQTSPEYAMKRLLA---- 70 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCC--cCCc-----ceeeeccCCCCCCcceeeecCHHHHHHHHHh----
Confidence 5789999999999999999999999998763110 1222 23321 1224566676443322221221
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCc-hhHHHH
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE-DQIKDE 412 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~-~~~~d~ 412 (653)
+ .+ =|+|++|+|||+|.+..+ ..-||+|.|+|....+ ++..+.
T Consensus 71 ~--g~-~rVfeigp~FRaE~~~~r----Hl~EFtmLE~e~~~~d~~d~m~~ 114 (304)
T TIGR00462 71 A--GS-GPIFQICKVFRNGERGRR----HNPEFTMLEWYRPGFDYHDLMDE 114 (304)
T ss_pred c--cC-CCEEEEcCceeCCCCCCC----cccHHHhHHHHHHcCCHHHHHHH
Confidence 1 13 389999999999998522 6779999999965443 444443
No 101
>PRK06462 asparagine synthetase A; Reviewed
Probab=97.91 E-value=5.9e-05 Score=80.01 Aligned_cols=124 Identities=15% Similarity=0.036 Sum_probs=76.2
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.-.+++..|.+.+|+.|.+.||.+|.||++....--...++.+ -.-..|.+ +-.|..+.|+...+-. -.+....
T Consensus 28 ~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~-~~~~~~~~-~~~~~~~yL~~Spql~-k~ll~~g--- 101 (335)
T PRK06462 28 KVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSD-LPVKQISI-DFYGVEYYLADSMILH-KQLALRM--- 101 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCcccc-CCcccccc-ccCCCceeeccCHHHH-HHHHHhh---
Confidence 4567899999999999999999999999997651100001111 01112222 2236678887653332 2222211
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeC-chhHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRAVLD 418 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~-~~~~~d~~~e~l~ 418 (653)
+ =|+|++|+|||+|.+.+ .+=-..-||+|.|+|.-+. -+...+...+++.
T Consensus 102 ---~-~rVfeI~p~FR~E~~~~-~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~ 152 (335)
T PRK06462 102 ---L-GKIFYLSPNFRLEPVDK-DTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIK 152 (335)
T ss_pred ---c-CcEEEEeccccCCCCCC-CCCCCCCchheeeehhhcCCHHHHHHHHHHHHH
Confidence 2 38999999999999862 1112577999999996553 3555554444443
No 102
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=97.90 E-value=0.00023 Score=75.84 Aligned_cols=122 Identities=17% Similarity=0.091 Sum_probs=76.8
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceec----ccCCceEEeccCChHHHHHHHHhh
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM----NIEDELYQLRPMNCPYHILVYQRK 360 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~----d~~~~~l~LrP~~~~~~~~~~~~~ 360 (653)
-.+++..|.+.+++.|.+.||.+|.||+|.....- |+ .+.|.+. +.-|+.+.|+...+-..-.+....
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~---~~-----~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g 92 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCE---GG-----AEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAG 92 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSS---SS-----SCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeeccccC---cc-----ccccccccchhhhcccceecCcChHHHHhhhcccc
Confidence 45789999999999999999999999999766311 22 3445543 234578888876655443333332
Q ss_pred hcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeee-CchhHHHHHHHHHHHHHHHH
Q 046808 361 LQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFC-LEDQIKDEIRAVLDLTEEIL 424 (653)
Q Consensus 361 ~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg-~~~~~~d~~~e~l~~~~~il 424 (653)
+ =|+|++|+|||+|.+. .+ .-.-||+|.|+|.-+ +.....+...+++..+.+.+
T Consensus 93 ------~-~~vf~i~~~FR~E~~~--~~-rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~ 147 (335)
T PF00152_consen 93 ------L-ERVFEIGPCFRNEESR--TR-RHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKEL 147 (335)
T ss_dssp ------H-SEEEEEEEEE-BSSSC--BT-TBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHH
T ss_pred ------c-hhhhheecceeccCcc--cc-cchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHH
Confidence 2 3899999999999973 11 145699999999854 44455665555555444433
No 103
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=2.2e-05 Score=78.06 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=81.0
Q ss_pred cHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccC
Q 046808 286 SIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYR 365 (653)
Q Consensus 286 ~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~ 365 (653)
...+++|.+.+|+.|...||.||+||.|...-+-. .|...|..+.+.-.+.++..+.|.+.-+-.+-++.+..
T Consensus 16 ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd--~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag----- 88 (322)
T COG2269 16 LLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTD--IHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAG----- 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCc--cceeeeeeEEeccCccccceeeeecCcHHHHHHHHHcc-----
Confidence 45789999999999999999999999996553322 24444444433333344678888877666655555443
Q ss_pred CCCcEEEEeeeeeecCCCCCCCCcceec--eeEEcceeeeeCc-hhHHHHHHHHHH
Q 046808 366 DFPIRVAELGTVYRYELSGSLHGLFRVR--GFTQDDAHIFCLE-DQIKDEIRAVLD 418 (653)
Q Consensus 366 ~lP~rl~~~g~~fR~E~~~~~~GL~R~R--EF~q~d~~ifg~~-~~~~d~~~e~l~ 418 (653)
--.+||+|+||||+..+ |+| ||||.|-|-.+-+ ....++...+++
T Consensus 89 --~~~ifql~kvfRN~E~G------~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~ 136 (322)
T COG2269 89 --SGPIFQLGKVFRNEEMG------RLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQ 136 (322)
T ss_pred --CCcchhhhHHHhccccc------ccCCCceeEeeeeccCCcHHHHHHHHHHHHH
Confidence 23679999999998855 444 9999999977665 335553344444
No 104
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.89 E-value=0.00048 Score=75.11 Aligned_cols=141 Identities=12% Similarity=0.121 Sum_probs=90.0
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEE-ecCccCch-----hhhhhcCcccccccccceecc---------------------
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLL-YTPHVAKA-----DLWKISGHLDFYRENMYDQMN--------------------- 337 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I-~tP~le~~-----~l~~~sg~~~~~~~~~y~~~d--------------------- 337 (653)
...-...+.+.++++|...||+++ ..|.++.. .|+.-..|-..=..+.|-+.+
T Consensus 219 ~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~ 298 (492)
T PLN02853 219 HLHPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHES 298 (492)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhc
Confidence 334567788888999999999999 56776543 122222332211123343321
Q ss_pred --------------cCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee
Q 046808 338 --------------IEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF 403 (653)
Q Consensus 338 --------------~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if 403 (653)
...+.++||.-|++...++..... .....|+|++.+|+|||+|.-.++ .+.||+|.|.-++
T Consensus 299 G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~-~~~~~p~k~fsigrVfR~d~iDat----H~~eFhQ~EG~vv 373 (492)
T PLN02853 299 GGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLA-QKGFKPKRYFSIDRVFRNEAVDRT----HLAEFHQVEGLVC 373 (492)
T ss_pred CCCCccccccccccchhcccccCCCCCHHHHHHHHHhh-ccCCCCcEEEeccceecCCCCCcc----cCccceeEEEEEE
Confidence 012578999855554444443321 112369999999999999985522 6789999999988
Q ss_pred eCchhHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 046808 404 CLEDQIKDEIRAVLDLTEEILLQFGFNKYEV 434 (653)
Q Consensus 404 g~~~~~~d~~~e~l~~~~~il~~lGl~~~~v 434 (653)
+..-... .++.+..++++++|......
T Consensus 374 d~~~t~~----~L~g~l~~f~~~lg~~~~Rf 400 (492)
T PLN02853 374 DRGLTLG----DLIGVLEDFFSRLGMTKLRF 400 (492)
T ss_pred eCCCCHH----HHHHHHHHHHHHcCCceEEE
Confidence 7553333 46788889999998844444
No 105
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.85 E-value=0.00012 Score=77.49 Aligned_cols=114 Identities=20% Similarity=0.130 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceec-ccCCceEEeccCChHHHHHHHHhhhccc
Q 046808 286 SIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM-NIEDELYQLRPMNCPYHILVYQRKLQSY 364 (653)
Q Consensus 286 ~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~-d~~~~~l~LrP~~~~~~~~~~~~~~~s~ 364 (653)
.+++..|...+|+.|...||.+|.||+|.... ..++.+ .|... +..+...+|+-..+- +.+.+...
T Consensus 8 l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~---~~~~~~-----~f~~~~~~~~~~~yL~~Spql-----~~k~ll~~ 74 (329)
T cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPIA---GGAAAR-----PFITHHNALDMDLYLRIAPEL-----YLKRLIVG 74 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccccCC---CCccce-----eEEeccCCCCcceeeccCHHH-----HHHHHHhc
Confidence 46889999999999999999999999997552 112222 23221 233566677633222 22222111
Q ss_pred CCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCc-hhHHHHHHHHHH
Q 046808 365 RDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE-DQIKDEIRAVLD 418 (653)
Q Consensus 365 ~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~-~~~~d~~~e~l~ 418 (653)
.+ =|+|++|+|||+|.+.. ...-||+|.|+|.-..+ +...+..++++.
T Consensus 75 -g~-~~vf~i~~~FR~E~~~~----rHl~EFt~le~e~~~~~~~~~m~~~e~li~ 123 (329)
T cd00775 75 -GF-ERVYEIGRNFRNEGIDL----THNPEFTMIEFYEAYADYNDMMDLTEDLFS 123 (329)
T ss_pred -CC-CcEEEEeccccCCCCCC----CCCCceEEEEEeeecCCHHHHHHHHHHHHH
Confidence 12 48999999999999762 26789999999965433 445554444443
No 106
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=97.83 E-value=8.6e-05 Score=84.08 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=73.2
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc--cCCceEEeccCChHHHHHHHHhhh
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN--IEDELYQLRPMNCPYHILVYQRKL 361 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d--~~~~~l~LrP~~~~~~~~~~~~~~ 361 (653)
.-.+++..|...+|+.|...||.||.||+|.....- |. ++ |.... ..+..++|+ .+.+ +|++.+
T Consensus 139 ~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~e---ga----~~--f~v~~~~~~~~~~~L~-qSpq----l~kq~l 204 (588)
T PRK00476 139 KNLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTPE---GA----RD--YLVPSRVHPGKFYALP-QSPQ----LFKQLL 204 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCCC---CC----cc--ceecccccCCceeecC-CCHH----HHHHHH
Confidence 456789999999999999999999999999764211 11 11 22111 134556664 2222 233322
Q ss_pred cccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCchhHHHHHHHHHH
Q 046808 362 QSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRAVLD 418 (653)
Q Consensus 362 ~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~~~~~d~~~e~l~ 418 (653)
.. ..+ =|+||+|+|||+|.+. .. |--||||.|+|. |.+-+...+..++++.
T Consensus 205 ~~-~g~-~rvfqi~~~FR~E~~~--~~--r~~EFt~le~e~af~~~~dvm~~~E~li~ 256 (588)
T PRK00476 205 MV-AGF-DRYYQIARCFRDEDLR--AD--RQPEFTQIDIEMSFVTQEDVMALMEGLIR 256 (588)
T ss_pred Hh-ccc-CceEEEeceeecCCCC--CC--cCcccccceeeecCCCHHHHHHHHHHHHH
Confidence 11 112 3899999999999975 45 767999999996 4444555554444443
No 107
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=5.6e-06 Score=87.54 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=70.8
Q ss_pred cccHHHHHHHHHHHHHH-HhcCCeEEecCccCchhhhhhc-Ccccccccccceeccc--CCceEEeccCChHHHHHHHHh
Q 046808 284 KGSIVRHIIEDFWKKSH-IEHDYDLLYTPHVAKADLWKIS-GHLDFYRENMYDQMNI--EDELYQLRPMNCPYHILVYQR 359 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~-~~~G~~~I~tP~le~~~l~~~s-g~~~~~~~~~y~~~d~--~~~~l~LrP~~~~~~~~~~~~ 359 (653)
.-.+++..+...+|+.+ .+.||.+|+||+| |+++ |+... |.+-.+ .|.-|+| |-+.+. |++
T Consensus 176 ~nLrlRS~~v~~iR~yl~n~~GFvevETPtL-----FkrTPgGA~E-----FvVPtr~~~g~FYaL-pQSPQQ----fKQ 240 (628)
T KOG2411|consen 176 NNLRLRSNVVKKIRRYLNNRHGFVEVETPTL-----FKRTPGGARE-----FVVPTRTPRGKFYAL-PQSPQQ----FKQ 240 (628)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeeeccCcch-----hccCCCccce-----eecccCCCCCceeec-CCCHHH----HHH
Confidence 34578899999999999 5789999999987 5555 33221 111111 1333444 333333 322
Q ss_pred hhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCchhHHHHHHHHHH
Q 046808 360 KLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRAVLD 418 (653)
Q Consensus 360 ~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~~~~~d~~~e~l~ 418 (653)
-+... -==|+||+++|||+|..- .- |.-||||.|+|. |.+.+.....++.++.
T Consensus 241 lLMvs--GidrYyQiARCfRDEdlR--~D--RQPEFTQvD~EMsF~~~~dim~liEdll~ 294 (628)
T KOG2411|consen 241 LLMVS--GIDRYYQIARCFRDEDLR--AD--RQPEFTQVDMEMSFTDQEDIMKLIEDLLR 294 (628)
T ss_pred HHHHh--chhhHHhHHhhhcccccC--cc--cCCcceeeeeEEeccCHHHHHHHHHHHHH
Confidence 22111 012889999999999864 44 889999999995 6655555554444443
No 108
>PLN02903 aminoacyl-tRNA ligase
Probab=97.80 E-value=0.00011 Score=83.12 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=73.4
Q ss_pred cccHHHHHHHHHHHHHHHh-cCCeEEecCccCchhhhhhcCcccccccccceecc-cCCceEEeccCChHHHHHHHHhhh
Q 046808 284 KGSIVRHIIEDFWKKSHIE-HDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN-IEDELYQLRPMNCPYHILVYQRKL 361 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~-~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~ 361 (653)
.-.+++..|...+|+.|.. .||.||.||+|.....- |.-+ .+.... ..+..++|+ .+.+ +|++.+
T Consensus 201 ~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~e---Gard-----f~v~~~~~~g~~y~L~-qSPQ----lykQ~L 267 (652)
T PLN02903 201 ANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPE---GARD-----YLVPSRVQPGTFYALP-QSPQ----LFKQML 267 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCCC---CCcc-----cEEeeecCCCcccccC-CCHH----HHHHHH
Confidence 4567899999999999986 99999999999755321 1111 111110 124455564 2222 233332
Q ss_pred cccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCchhHHHHHHHHHH
Q 046808 362 QSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRAVLD 418 (653)
Q Consensus 362 ~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~~~~~d~~~e~l~ 418 (653)
... .+ =|+||+|+|||+|... .. |.-||||.|+|. |.+-+...+..++++.
T Consensus 268 m~~-G~-~RvFqIa~~FR~E~~~--t~--RhpEFTqLE~E~sf~d~~dvm~~~E~li~ 319 (652)
T PLN02903 268 MVS-GF-DRYYQIARCFRDEDLR--AD--RQPEFTQLDMELAFTPLEDMLKLNEDLIR 319 (652)
T ss_pred Hhc-cC-CcEEEEehhhccCCCC--CC--cccceeeeeeeecCCCHHHHHHHHHHHHH
Confidence 211 12 3899999999999986 45 888999999995 4444555554444443
No 109
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=97.79 E-value=0.00018 Score=80.06 Aligned_cols=116 Identities=18% Similarity=0.115 Sum_probs=74.7
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccccccccee-cccCCceEEeccCChHHHHHHHHhhhc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQ-MNIEDELYQLRPMNCPYHILVYQRKLQ 362 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~-~d~~~~~l~LrP~~~~~~~~~~~~~~~ 362 (653)
.-.+++..|...+|+.|...||.+|.||+|.+.. |+. ....|.. .+--+..++|+-..+ ++.+.+.
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----~Ga---~a~pF~t~~~~~~~~~yL~~Spq-----l~lk~l~ 236 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA-----GGA---AARPFITHHNALDIDLYLRIAPE-----LYLKRLI 236 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceeccC-----CCc---cceeeeeccccCCCceEeccCHH-----HHHHHHH
Confidence 3467899999999999999999999999996441 221 1122322 122355667763322 2322221
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCchhHHHHHHHHHH
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRAVLD 418 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~~~~~d~~~e~l~ 418 (653)
.. .+ =|+|++|+|||+|...+ -+.-||||.|+|. |.+-+...+..++++.
T Consensus 237 v~-g~-~rVfei~~~FR~E~~~~----rH~pEFt~lE~e~a~~d~~d~m~~~E~li~ 287 (491)
T PRK00484 237 VG-GF-ERVYEIGRNFRNEGIDT----RHNPEFTMLEFYQAYADYNDMMDLTEELIR 287 (491)
T ss_pred hc-cC-CcEEEEecceecCCCCC----CcCCceEEEEEEEecCCHHHHHHHHHHHHH
Confidence 10 12 38999999999999862 2778999999995 4443555555444443
No 110
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=97.77 E-value=0.00015 Score=79.81 Aligned_cols=115 Identities=18% Similarity=0.315 Sum_probs=75.4
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.-.+++..|...+|+.|.+.||.+|.||+|..... .|+.+ .|.+ +--|..++|+-..+- +++.+..
T Consensus 134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~---eg~~~-----~f~~-~~~~~~~~L~~Spql-----~~q~l~~ 199 (437)
T PRK05159 134 AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGT---EGGAE-----LFPI-DYFEKEAYLAQSPQL-----YKQMMVG 199 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCC---CCCcc-----eEeE-EecCCceEecCCHHH-----HHHHHHh
Confidence 45678999999999999999999999999953211 13333 3433 223567777644332 2222221
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcce-eceeEEcceee-eeC-chhHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFR-VRGFTQDDAHI-FCL-EDQIKDEIRAVLD 418 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R-~REF~q~d~~i-fg~-~~~~~d~~~e~l~ 418 (653)
. .+ =|+|++|+|||+|.+.+ . | .-||+|.|+|. |.+ -+...+..++++.
T Consensus 200 ~-g~-~rVf~i~~~FR~E~~~t--~--rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~ 251 (437)
T PRK05159 200 A-GF-ERVFEIGPVFRAEEHNT--S--RHLNEYTSIDVEMGFIDDHEDVMDLLENLLR 251 (437)
T ss_pred c-CC-CcEEEEeceeeCCCCCC--c--ccchhhheeeeeeeecccHHHHHHHHHHHHH
Confidence 1 12 38999999999999862 2 3 45999999996 444 4556665555554
No 111
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=97.76 E-value=0.00012 Score=83.63 Aligned_cols=117 Identities=22% Similarity=0.178 Sum_probs=74.1
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.-.+++..|...+|+.|...||.+|.||+|.....- |.-+ -++...-..+.-|+|+ .+.. +|++.+..
T Consensus 154 ~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~e---GAr~----~~~p~~~~~~~~y~L~-qSPQ----lykq~lm~ 221 (706)
T PRK12820 154 DHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPE---GARD----YLVPSRIHPKEFYALP-QSPQ----LFKQLLMI 221 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCC---CCcc----eEEeeecCCCcceecC-CCHH----HHHHHHHh
Confidence 456789999999999999999999999999754211 1111 1111100123344454 2222 34443221
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCchhHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRAVLD 418 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~~~~~d~~~e~l~ 418 (653)
. .+ =|+||+|+|||+|... .- |.-||||.|+|. |.+.+...+..++++.
T Consensus 222 ~-G~-~rvfqI~~~FR~E~~~--t~--r~pEFT~LE~E~af~d~~dvm~l~E~li~ 271 (706)
T PRK12820 222 A-GF-ERYFQLARCFRDEDLR--PN--RQPEFTQLDIEASFIDEEFIFELIEELTA 271 (706)
T ss_pred c-cC-CcEEEEechhcCCCCC--CC--cCccccccceeeccCCHHHHHHHHHHHHH
Confidence 1 12 3899999999999986 33 778999999995 5555656665455544
No 112
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=97.75 E-value=0.00017 Score=79.16 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=74.2
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.-.+++..|.+.+|+.|.+.||.+|.||+|..... -|+.+ .|.+ +.-+..++|+-..+- +++.+..
T Consensus 131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~---eg~~~-----~f~v-~~~~~~~yL~~Spql-----~~q~li~ 196 (428)
T TIGR00458 131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT---EGGTE-----LFPI-TYFEREAFLGQSPQL-----YKQQLMA 196 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC---CCCcc-----eeee-EecCCcEEECcCHHH-----HHHHHHh
Confidence 45689999999999999999999999999864311 13333 3332 223456677643222 2222111
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee-eCchhHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF-CLEDQIKDEIRAVLD 418 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if-g~~~~~~d~~~e~l~ 418 (653)
. .+ =|+|++|+|||+|.+.+ . --.-||+|.|+|.- .+-+...+..++++.
T Consensus 197 ~-g~-~rVf~i~~~FR~E~~~t--~-rHl~EFt~lE~e~a~~~~~dlm~~~e~li~ 247 (428)
T TIGR00458 197 A-GF-ERVYEIGPIFRAEEHNT--H-RHLNEATSIDIEMAFEDHHDVMDILEELVV 247 (428)
T ss_pred c-cc-CcEEEEecccccCCCCC--c-cchheeeEeeeeeccCCHHHHHHHHHHHHH
Confidence 1 12 38999999999999862 2 02359999999964 444555555455544
No 113
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=97.74 E-value=0.00018 Score=81.05 Aligned_cols=115 Identities=16% Similarity=0.048 Sum_probs=74.8
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccccccccee-cccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQ-MNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~-~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
-.+++..|.+.+|+.|...||.||.||+|.... |+... .-|.. ...-+.+++||-..+-..-++....
T Consensus 252 ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~-----GGA~a---~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG--- 320 (585)
T PTZ00417 252 TFITRTKIINYLRNFLNDRGFIEVETPTMNLVA-----GGANA---RPFITHHNDLDLDLYLRIATELPLKMLIVGG--- 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC-----Ccccc---eeEEecccCCCcceEEeecHHHHHHHHHHhC---
Confidence 456899999999999999999999999997651 22110 11111 0123566788755443333332221
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeC-chhHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRAVLD 418 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~-~~~~~d~~~e~l~ 418 (653)
+ =|+|++|+|||+|...++ ..-||||.|+|.-.. -+...+..++++.
T Consensus 321 ---~-~rVfeIgp~FRnE~~~~r----HnpEFTmlE~y~ay~dy~dlM~l~E~Li~ 368 (585)
T PTZ00417 321 ---I-DKVYEIGKVFRNEGIDNT----HNPEFTSCEFYWAYADFYDLIKWSEDFFS 368 (585)
T ss_pred ---C-CCEEEEcccccCCCCCCC----ccceeeeeeeeeecCCHHHHHHHHHHHHH
Confidence 2 389999999999997632 567999999996443 3555554444443
No 114
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=97.72 E-value=0.00019 Score=79.93 Aligned_cols=115 Identities=17% Similarity=0.077 Sum_probs=74.5
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccccccccee-cccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQ-MNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~-~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
-.+++..|...+|+.|...||.+|.||+|... .|+... .-|.. .+.-+.+++|+=..+-..-++...
T Consensus 183 ~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~-----~gGa~a---~pF~t~~~~~~~~~yL~~SpELylKrlivg---- 250 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI-----PGGASA---RPFITHHNALDLDMYLRIAPELYLKRLVVG---- 250 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec-----CCCCcc---cceecccccCCcceeeecCHHHHHHHHHhc----
Confidence 46789999999999999999999999999653 122110 11211 122355677764433222222211
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee-eCchhHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF-CLEDQIKDEIRAVLD 418 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if-g~~~~~~d~~~e~l~ 418 (653)
.+ =|+|++|+|||+|.... -..-||||.|+|.- .+-+...+..++++.
T Consensus 251 --G~-~rVfeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~d~m~l~E~li~ 299 (505)
T PRK12445 251 --GF-ERVFEINRNFRNEGISV----RHNPEFTMMELYMAYADYHDLIELTESLFR 299 (505)
T ss_pred --cC-CcEEEEehhccCCCCCC----CcCcccceeeeeeecCCHHHHHHHHHHHHH
Confidence 12 38999999999999752 26789999999975 443556665555554
No 115
>PLN02502 lysyl-tRNA synthetase
Probab=97.69 E-value=0.00022 Score=80.06 Aligned_cols=116 Identities=15% Similarity=0.056 Sum_probs=76.3
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccccccccee-cccCCceEEeccCChHHHHHHHHhhhc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQ-MNIEDELYQLRPMNCPYHILVYQRKLQ 362 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~-~d~~~~~l~LrP~~~~~~~~~~~~~~~ 362 (653)
.-.+++..|...+|+.|...||.+|.||+|.... |+.. ..-|.. .+.-+..++|+=..+-..-.++...
T Consensus 227 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~-----gGA~---a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g-- 296 (553)
T PLN02502 227 DIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIA-----GGAA---ARPFVTHHNDLNMDLYLRIATELHLKRLVVGG-- 296 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccC-----CCcc---ccceeeecccCCcceeeecCHHHHHHHHHHhc--
Confidence 3457899999999999999999999999996542 2211 112222 1233567778644333322222221
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCchhHHHHHHHHHH
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRAVLD 418 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~~~~~d~~~e~l~ 418 (653)
+ =|+|++|+|||+|.... -..-||||.|+|. |.+-+...+..++++.
T Consensus 297 ----~-~rVfeIg~~FRnE~~~~----rH~pEFtmlE~y~a~~d~~dlm~~~E~li~ 344 (553)
T PLN02502 297 ----F-ERVYEIGRQFRNEGIST----RHNPEFTTCEFYQAYADYNDMMELTEEMVS 344 (553)
T ss_pred ----c-CCEEEEcCeeeCCCCCC----ccccceeehhhhhhcCCHHHHHHHHHHHHH
Confidence 2 38999999999999762 3778999999995 4444556665455544
No 116
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=97.69 E-value=0.00022 Score=78.73 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=74.1
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceec--------ccCCceEEeccCChHHHHH
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM--------NIEDELYQLRPMNCPYHIL 355 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~--------d~~~~~l~LrP~~~~~~~~ 355 (653)
.-.+++..|...+|+.|...||.+|.||+|.... ..|+. +.|.+. +--|..++|+...+-
T Consensus 131 ~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~---~eg~~-----~~F~v~~~~~~~~~~~~~~~~~L~~Spql---- 198 (450)
T PRK03932 131 AVMRIRNTLAQAIHEFFNENGFVWVDTPIITASD---CEGAG-----ELFRVTTLDLDFSKDFFGKEAYLTVSGQL---- 198 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCceeccC---CCCCC-----CceEeecccccccccccCCCcccccCHHH----
Confidence 4567899999999999999999999999997652 11222 234431 122456677544322
Q ss_pred HHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee-eCchhHHHHHHHHHH
Q 046808 356 VYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF-CLEDQIKDEIRAVLD 418 (653)
Q Consensus 356 ~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if-g~~~~~~d~~~e~l~ 418 (653)
+.+.+.+ .+ =|+|++|+|||+|.+. .. --.-||+|.|+|.- .+-+...+..++++.
T Consensus 199 -~lq~l~~--g~-~rVf~i~~~FR~E~~~--t~-rHl~EFt~lE~e~~~~~~~~~m~~~e~li~ 255 (450)
T PRK03932 199 -YAEAYAM--AL-GKVYTFGPTFRAENSN--TR-RHLAEFWMIEPEMAFADLEDNMDLAEEMLK 255 (450)
T ss_pred -HHHHHHh--cc-CCeEEeeeccccCCCC--Cc-cccccccccceEEeccCHHHHHHHHHHHHH
Confidence 2222211 23 3899999999999863 11 02359999999964 444555555455544
No 117
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=97.67 E-value=0.00018 Score=80.16 Aligned_cols=117 Identities=17% Similarity=0.106 Sum_probs=76.2
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceec-ccCCceEEeccCChHHHHHHHHhhhc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM-NIEDELYQLRPMNCPYHILVYQRKLQ 362 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~-d~~~~~l~LrP~~~~~~~~~~~~~~~ 362 (653)
.-.+++..|...+|+.|...||.+|.||+|.+.. |+.. -.-|... ..-+..++||-..+-..-++...
T Consensus 170 ~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~-----gga~---a~pF~t~~~~~~~~~yLriSpELylKrlivg--- 238 (496)
T TIGR00499 170 QTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP-----GGAN---ARPFITHHNALDMDLYLRIAPELYLKRLIVG--- 238 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC-----CCcc---ceeEEeecccCCCceEEecCHHHHHHHHHhC---
Confidence 3557899999999999999999999999996541 2211 1123221 12356677875533322222211
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee-eCchhHHHHHHHHHHH
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF-CLEDQIKDEIRAVLDL 419 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if-g~~~~~~d~~~e~l~~ 419 (653)
.+ =|+|++|+|||+|...+ -..-||||.|+|.- .+-+...+..++++..
T Consensus 239 ---G~-~rVfeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~ 288 (496)
T TIGR00499 239 ---GF-EKVYEIGRNFRNEGVDT----THNPEFTMIEFYQAYADYEDLMDLTENLFKF 288 (496)
T ss_pred ---CC-CceEEEecceecCCCCC----cccchhheeehhhhcCCHHHHHHHHHHHHHH
Confidence 12 38999999999999863 26779999999954 4445566655555543
No 118
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=97.63 E-value=0.00034 Score=79.24 Aligned_cols=115 Identities=16% Similarity=0.123 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceec-ccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM-NIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~-d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
-.+++..|.+.+|+.|...||.+|.||+|... .+|.. ...|... +..+..++|+=..+- |.+.+..
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~----~~ga~----a~pF~t~~n~~~~~~yL~~SPEL-----ylKrLiv 298 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTV----ASGAN----AKSFVTHHNANAMDLFLRVAPEL-----HLKQCIV 298 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeecc----CCCCC----ccceEeecccCCCCEEecCChHH-----HHHHHhh
Confidence 45789999999999999999999999999543 12211 1223321 123456777644332 3332221
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCc-hhHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE-DQIKDEIRAVLD 418 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~-~~~~d~~~e~l~ 418 (653)
. .+ =|+|++|+|||+|.... - ..-||||.|+|....+ +...+..++++.
T Consensus 299 g-G~-erVyeIg~~FRnE~~~~--r--H~pEFTmlE~y~a~~d~~d~m~l~E~li~ 348 (659)
T PTZ00385 299 G-GM-ERIYEIGKVFRNEDADR--S--HNPEFTSCEFYAAYHTYEDLMPMTEDIFR 348 (659)
T ss_pred c-cc-CCEEEEeceecCCCCCC--C--ccccccceeeeeecCCHHHHHHHHHHHHH
Confidence 1 12 38999999999999862 2 6789999999965443 445554444443
No 119
>PLN02850 aspartate-tRNA ligase
Probab=97.59 E-value=0.00032 Score=78.53 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=74.8
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.-.+++..|.+.+|+.|...||.+|.||+|..... -|+. +.|.+ +-.|+.++|+-... ++++.+..
T Consensus 223 aifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~---egga-----~~F~v-~yf~~~~~L~qSpq-----l~kq~li~ 288 (530)
T PLN02850 223 AIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS---EGGS-----AVFRL-DYKGQPACLAQSPQ-----LHKQMAIC 288 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC---cccc-----ceeee-ccCCcceecCCCHH-----HHHHHHHH
Confidence 34578999999999999999999999999954321 1222 23443 33467778864322 23222211
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEccee-eeeCc-hhHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAH-IFCLE-DQIKDEIRAVLD 418 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~-ifg~~-~~~~d~~~e~l~ 418 (653)
..+ =|+|++|+|||+|.+.. . --.-||+|.|+| .|+.. +...+...+++.
T Consensus 289 -~g~-~rVfeIgp~FRaE~s~t--~-RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~ 340 (530)
T PLN02850 289 -GDF-RRVFEIGPVFRAEDSFT--H-RHLCEFTGLDLEMEIKEHYSEVLDVVDELFV 340 (530)
T ss_pred -hcC-CceEEEecccccCCCCC--C-ccchhhccchhhhhhhcCHHHHHHHHHHHHH
Confidence 123 28999999999999641 1 024599999999 56643 555555455544
No 120
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=97.40 E-value=0.00073 Score=75.80 Aligned_cols=116 Identities=18% Similarity=0.299 Sum_probs=75.0
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.-.+++..|...+|+.|...||.+|.||.|.... .-|+.+. |.+ +--|..++|+-. |. ++++.+..
T Consensus 211 ~i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~---~egga~~-----F~v-~yf~~~~~L~qS--pq---l~kq~li~ 276 (550)
T PTZ00401 211 AIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAP---SEGGANV-----FKL-EYFNRFAYLAQS--PQ---LYKQMVLQ 276 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC---CCccccc-----ccc-ccCCCCeecCCC--HH---HHHHHHHh
Confidence 3457899999999999999999999999997653 1133333 332 223566777533 21 23332221
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCc-hhHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLE-DQIKDEIRAVLD 418 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~-~~~~d~~~e~l~ 418 (653)
. .+ =|+|++|+|||+|.+.. += -.-||+|.|+|. |+.. +...+...+++.
T Consensus 277 ~-g~-~rVfeI~p~FRaE~s~T-~R--Hl~EFt~Le~E~~~~~~y~evm~~~e~l~~ 328 (550)
T PTZ00401 277 G-DV-PRVFEVGPVFRSENSNT-HR--HLTEFVGLDVEMRINEHYYEVLDLAESLFN 328 (550)
T ss_pred c-CC-CCEEEEeCeEeCCCCCC-CC--CccchhhhhhhhHhcCCHHHHHHHHHHHHH
Confidence 1 22 38999999999999862 11 245999999974 6543 556665555544
No 121
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=97.38 E-value=0.0009 Score=73.88 Aligned_cols=115 Identities=12% Similarity=0.163 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc--------cCCceEEeccCChHHHHHH
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN--------IEDELYQLRPMNCPYHILV 356 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d--------~~~~~l~LrP~~~~~~~~~ 356 (653)
-.+++..|...+++.|...||.+|.||+|..... .|.. ++|.+.. --|+..+|+-.. + +
T Consensus 135 ~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~---eg~~-----~~F~v~~~~~~~~~~~~~~~~yL~~Sp-q----l 201 (453)
T TIGR00457 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDC---EGAG-----ELFRVSTDGIDFSQDFFGKEAYLTVSG-Q----L 201 (453)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC---CCCC-----CceEecccccccchhccCCccccccCH-H----H
Confidence 3589999999999999999999999999975431 1222 2333220 124555565332 1 2
Q ss_pred HHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee-eCchhHHHHHHHHHH
Q 046808 357 YQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF-CLEDQIKDEIRAVLD 418 (653)
Q Consensus 357 ~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if-g~~~~~~d~~~e~l~ 418 (653)
+++.+.+ .+ =|+|++|+|||+|.+.. . --.-||+|.|+|.- .+-+...+..++++.
T Consensus 202 ~lq~l~~--g~-~rVf~i~~~FR~E~~~t--~-rHl~EFt~le~e~~~~~~~dvm~~~E~lv~ 258 (453)
T TIGR00457 202 YLETYAL--AL-SKVYTFGPTFRAEKSNT--S-RHLSEFWMIEPEMAFANLNDLLQLAETLIK 258 (453)
T ss_pred HHHHHhh--cc-cCceEeeeccccCCCCC--C-cCcchhccceeeeecCCHHHHHHHHHHHHH
Confidence 2222211 23 28999999999998752 1 02359999999954 444555554444443
No 122
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=97.28 E-value=0.00071 Score=81.98 Aligned_cols=115 Identities=20% Similarity=0.161 Sum_probs=73.8
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceec-ccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM-NIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~-d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
-.+++..|.+.+|+.+...||.||.||+|...+ |+. .-+.|... +.-+.+++||-..+- |.+.+..
T Consensus 769 ~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~-----gGa---~a~pF~t~~~~~~~~~yLriSPEL-----ylKrLiv 835 (1094)
T PRK02983 769 LLRARSAVVRAVRETLVARGFLEVETPILQQVH-----GGA---NARPFVTHINAYDMDLYLRIAPEL-----YLKRLCV 835 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC-----CCc---ccceeEeeecCCCccchhhcChHH-----HHHHHHh
Confidence 356899999999999999999999999996331 211 11223221 223556677644332 3222211
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeC-chhHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL-EDQIKDEIRAVLD 418 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~-~~~~~d~~~e~l~ 418 (653)
..+ =|+|++|+|||+|....+ ..-||||.|+|.-.. -+...+..++++.
T Consensus 836 -gG~-erVFEIg~~FRnE~~~~r----HnpEFTmLE~y~a~~dy~d~m~l~E~li~ 885 (1094)
T PRK02983 836 -GGV-ERVFELGRNFRNEGVDAT----HNPEFTLLEAYQAHADYDTMRDLTRELIQ 885 (1094)
T ss_pred -ccc-CceEEEcceecCCCCCCC----ccccccchhhhhhcCCHHHHHHHHHHHHH
Confidence 012 389999999999998632 667999999996543 3555555455554
No 123
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.23 E-value=0.0025 Score=71.59 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=31.2
Q ss_pred CccccHHHHHHHHHHHHHHHhcCCeEEecCccCchh
Q 046808 282 HPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKAD 317 (653)
Q Consensus 282 lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~ 317 (653)
+-.-+++|..|...+++.|...||.+|.||+|...+
T Consensus 211 ~~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 211 ISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 335678999999999999999999999999996553
No 124
>PLN02221 asparaginyl-tRNA synthetase
Probab=97.22 E-value=0.0023 Score=71.94 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=30.1
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchh
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKAD 317 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~ 317 (653)
.-.+++..|...+++.|.+.||.+|.||.|...+
T Consensus 169 Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 169 AVARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 4568999999999999999999999999996553
No 125
>PLN02532 asparagine-tRNA synthetase
Probab=97.18 E-value=0.0025 Score=72.09 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=29.8
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCch
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKA 316 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~ 316 (653)
.-.+++..|...+++.|...||.+|.||+|...
T Consensus 233 ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s 265 (633)
T PLN02532 233 SVTRVRSALTHATHTFFQDHGFLYVQVPIITTT 265 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeeccc
Confidence 456899999999999999999999999999655
No 126
>PLN02603 asparaginyl-tRNA synthetase
Probab=97.17 E-value=0.0029 Score=71.21 Aligned_cols=115 Identities=16% Similarity=0.107 Sum_probs=67.5
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc--------------------------
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN-------------------------- 337 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d-------------------------- 337 (653)
.-.+++..|...+++.|...||.+|.||+|...+-= |. .++|.+.-
T Consensus 224 ai~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~E---GA-----~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~ 295 (565)
T PLN02603 224 AVARVRNALAYATHKFFQENGFVWVSSPIITASDCE---GA-----GEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDW 295 (565)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecccCCC---cc-----ccCceeeeccccccccccccccccccCccccccc
Confidence 345899999999999999999999999999755311 11 12232210
Q ss_pred ---cCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCchhHHHHH
Q 046808 338 ---IEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEI 413 (653)
Q Consensus 338 ---~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~~~~~d~~ 413 (653)
--|+..+|.-.. +.+-.++.. .+ =|+|++|+|||.|.+.. . --+-||+|.|+|+ |..-+...+..
T Consensus 296 ~~dyF~~~~~LtvS~-QL~~E~~~~------~l-~rVy~igp~FRaE~s~T--~-RHL~EF~mlE~E~af~dl~d~m~~~ 364 (565)
T PLN02603 296 SQDFFGKPAFLTVSG-QLNGETYAT------AL-SDVYTFGPTFRAENSNT--S-RHLAEFWMIEPELAFADLNDDMACA 364 (565)
T ss_pred chhhhCcceeeccCc-hHHHHHHHh------cc-cceEEEecceeCCCCCC--c-cccccceeeeeeeecCCHHHHHHHH
Confidence 001222232111 111111111 22 28899999999999862 2 0346999999996 55434444433
Q ss_pred HHHH
Q 046808 414 RAVL 417 (653)
Q Consensus 414 ~e~l 417 (653)
++++
T Consensus 365 E~~l 368 (565)
T PLN02603 365 TAYL 368 (565)
T ss_pred HHHH
Confidence 3333
No 127
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0034 Score=68.03 Aligned_cols=98 Identities=20% Similarity=0.082 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccccccccee-cccCCceEEeccCChHHHHHHHHhhhccc
Q 046808 286 SIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQ-MNIEDELYQLRPMNCPYHILVYQRKLQSY 364 (653)
Q Consensus 286 ~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~-~d~~~~~l~LrP~~~~~~~~~~~~~~~s~ 364 (653)
...+.+|.+.+|+.+...||.||+||+|.+- .|+... .=|.. ...-+-+++||=..|-..-++.-..
T Consensus 180 f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i-----~GGA~A---rPF~ThhNald~dlyLRIApELyLKRliVGG---- 247 (502)
T COG1190 180 FIKRSKIIRAIREFLDDRGFLEVETPMLQPI-----PGGAAA---RPFITHHNALDMDLYLRIAPELYLKRLIVGG---- 247 (502)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEecccccccc-----CCCccc---ccceeeecccCCceEEeeccHHHHHHHHhcC----
Confidence 4578899999999999999999999999654 233221 11222 2334667899966554433333222
Q ss_pred CCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee
Q 046808 365 RDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI 402 (653)
Q Consensus 365 ~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i 402 (653)
+ =|+|++|++||+|.-..+ ---||+|.++|.
T Consensus 248 --~-erVfEIgr~FRNEGid~t----HNPEFTmlE~Y~ 278 (502)
T COG1190 248 --F-ERVFEIGRNFRNEGIDTT----HNPEFTMLEFYQ 278 (502)
T ss_pred --c-hhheeeccccccCCCccc----cCcchhhHHHHH
Confidence 2 289999999999987633 235999999885
No 128
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0032 Score=67.74 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=74.3
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.-++++..|...+++.|.+.||.+|.||.|...+.= | ..++|.+. --+.+..|.= .++ +++..+..
T Consensus 132 Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~E---G-----g~elF~v~-yf~~~a~Ltq--S~Q---Lyke~~~~ 197 (435)
T COG0017 132 AVFKIRSSILRAIREFFYENGFTEVHTPIITASATE---G-----GGELFKVD-YFDKEAYLTQ--SPQ---LYKEALAA 197 (435)
T ss_pred HHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCCC---C-----CceeEEEe-ecCcceEEec--CHH---HHHHHHHH
Confidence 456799999999999999999999999999665322 1 24566642 2233333421 121 22222111
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee-eCchhHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF-CLEDQIKDEIRAVLD 418 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if-g~~~~~~d~~~e~l~ 418 (653)
. | =|+|.+|++||.|.+..+ = -+-||+|.|+|+- ..-+...+..++++.
T Consensus 198 a--l-~rVf~igP~FRAE~s~T~-R--HL~EF~~ld~Emaf~~~~d~m~l~E~~i~ 247 (435)
T COG0017 198 A--L-ERVFTIGPTFRAEKSNTR-R--HLSEFWMLDPEMAFADLNDVMDLAEELIK 247 (435)
T ss_pred H--h-CceEEecCceecCCCCCc-c--hhhhHheecceeccCcHHHHHHHHHHHHH
Confidence 0 1 289999999999999732 1 3789999999974 443555555455544
No 129
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.0028 Score=67.31 Aligned_cols=116 Identities=22% Similarity=0.165 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccccccccee-cccCCceEEeccCChHHHHHHHHhhhccc
Q 046808 286 SIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQ-MNIEDELYQLRPMNCPYHILVYQRKLQSY 364 (653)
Q Consensus 286 ~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~-~d~~~~~l~LrP~~~~~~~~~~~~~~~s~ 364 (653)
..++.+|+.++|+.+...||-||+||+|... .|+... + =|.. ...-+.+++||=..+-.+-.++-..+
T Consensus 225 f~~RakII~~iRkfld~rgFlEVETPmmn~i-----aGGA~A--k-PFIT~hndldm~LylRiAPEL~lK~LvVGGl--- 293 (560)
T KOG1885|consen 225 FRIRAKIISYIRKFLDSRGFLEVETPMMNMI-----AGGATA--K-PFITHHNDLDMDLYLRIAPELYLKMLVVGGL--- 293 (560)
T ss_pred HHHHHHHHHHHHHHhhhcCceEecchhhccc-----cCcccc--C-ceeecccccCcceeeeechHHHHHHHHhccH---
Confidence 4678899999999999999999999998433 233221 1 1222 22336678888655544444433332
Q ss_pred CCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHH
Q 046808 365 RDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQ 426 (653)
Q Consensus 365 ~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~ 426 (653)
-|+|++|+.||+|.-..+ ---||+-+|+|.- .+| |..+.+++++++..
T Consensus 294 ----drVYEIGr~FRNEGIDlT----HNPEFTTcEfY~A-----Yad-y~dlm~~TE~l~s~ 341 (560)
T KOG1885|consen 294 ----DRVYEIGRQFRNEGIDLT----HNPEFTTCEFYMA-----YAD-YEDLMDMTEELLSG 341 (560)
T ss_pred ----HHHHHHHHHhhhcCcccc----cCCCcchHHHHHH-----Hhh-HHHHHHHHHHHHHH
Confidence 388999999999987632 4469999988732 222 23455555555543
No 130
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=96.33 E-value=0.017 Score=62.38 Aligned_cols=88 Identities=16% Similarity=0.281 Sum_probs=63.3
Q ss_pred CceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHH
Q 046808 340 DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDL 419 (653)
Q Consensus 340 ~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~ 419 (653)
-..+.||..++|+..+..... ....++|+|++.+|+|||+|.... .- +.++|+|.++-+.+..-... ++..+
T Consensus 180 s~~~lLRTHTTpgqirtL~~L-~~~~~~PiRIFsIGRVfRrD~~~D-aT--Hl~eFhQlEGLVVdedVSf~----DLKgv 251 (533)
T TIGR00470 180 STTLTLRSHMTSGWFITLSSI-IDKRKLPLKLFSIDRCFRREQRED-RS--HLMTYHSASCVVVDEEVSVD----DGKAV 251 (533)
T ss_pred hhCcccccCChhHHHHHHHHH-hhcCCCCeEEEeeeeEEecCCCCC-Cc--cCceeeeEEEEEECCCCCHH----HHHHH
Confidence 456789998888655555431 123468999999999999996321 22 78999999998887754433 46778
Q ss_pred HHHHHHHcCCCeEEEE
Q 046808 420 TEEILLQFGFNKYEVN 435 (653)
Q Consensus 420 ~~~il~~lGl~~~~v~ 435 (653)
...+++.||+..+.++
T Consensus 252 Le~LLr~LG~~~vRFR 267 (533)
T TIGR00470 252 AEGLLAQFGFTKFRFR 267 (533)
T ss_pred HHHHHHHhCCceEEec
Confidence 8899999998545554
No 131
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=96.06 E-value=0.05 Score=61.93 Aligned_cols=134 Identities=13% Similarity=0.190 Sum_probs=94.4
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhh-hhhcCcccccccccceecc-cCCceEEeccCChHHHHHHHHhhhc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADL-WKISGHLDFYRENMYDQMN-IEDELYQLRPMNCPYHILVYQRKLQ 362 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l-~~~sg~~~~~~~~~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~~ 362 (653)
...-.+.+.+.+++.+...||+|+.|..|.+.+. +..-+... .....++.. ...+.-+||+...|+.....+.+.+
T Consensus 357 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~--~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~ 434 (552)
T PRK09616 357 RLHPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEP--EEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKH 434 (552)
T ss_pred CCChHHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCC--CCCeEEEcCCCccchheEeccchHHHHHHHHhccC
Confidence 4445677888899999999999999999988865 54322111 112344432 3455678999999998888877663
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
++.|+|+|++|+||+.+..+. . ..+|+.+..+-+.|.+ .+ +.++......++..+|++
T Consensus 435 --~~~~~~lFEiG~Vf~~~~~~~--~--~~~e~~~l~~~~~g~~---~d-f~dlKg~ve~ll~~lgi~ 492 (552)
T PRK09616 435 --REYPQKIFEIGDVVLIDESTE--T--GTRTERKLAAAIAHSE---AS-FTEIKSVVQALLRELGIE 492 (552)
T ss_pred --CCCCeeEEEeeEEEecCCccc--c--CcchhhEEEEEEECCC---CC-HHHHHHHHHHHHHHcCCe
Confidence 467999999999998754321 1 2368888887777752 22 356777888888999983
No 132
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.85 E-value=0.047 Score=57.27 Aligned_cols=98 Identities=20% Similarity=0.232 Sum_probs=61.2
Q ss_pred cHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccC
Q 046808 286 SIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYR 365 (653)
Q Consensus 286 ~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~ 365 (653)
.++...|...+|+.+...||.+|.||-|.... .+. +.++|++. --+..-+|.- -| .+|++-..- .
T Consensus 228 Friq~gvc~~FRe~L~~kgF~EIhTpKli~as-------SEG-GanvF~v~-Yfk~~A~LAQ--SP---QLyKQMaI~-g 292 (533)
T KOG0556|consen 228 FRIQAGVCFAFREYLRSKGFVEIHTPKLIGAS-------SEG-GANVFRVS-YFKQKAYLAQ--SP---QLYKQMAIC-G 292 (533)
T ss_pred eehHHHHHHHHHHHHHhcCcceeccccccccc-------CCC-CceeEEEE-eccCcchhhc--Ch---HHHHHHHHh-c
Confidence 35677889999999999999999999885441 121 35566642 1122222210 11 122221110 1
Q ss_pred CCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee
Q 046808 366 DFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI 402 (653)
Q Consensus 366 ~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i 402 (653)
++ -|+|.+|+|||.|.+. .+- -+-||.-.|++.
T Consensus 293 df-~rVyeIGpVfRAEdSn-thR--hltEFvGLD~EM 325 (533)
T KOG0556|consen 293 DF-ERVYEIGPVFRAEDSN-THR--HLTEFVGLDLEM 325 (533)
T ss_pred ch-hheeeecceeeccccc-hhh--hhHHhhCcchhh
Confidence 22 3899999999999997 344 577998888874
No 133
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=94.75 E-value=0.11 Score=50.92 Aligned_cols=128 Identities=15% Similarity=0.157 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc-cCCceEEeccCChHHHHHHHHhhhcccCCCC
Q 046808 290 HIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN-IEDELYQLRPMNCPYHILVYQRKLQSYRDFP 368 (653)
Q Consensus 290 ~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP 368 (653)
+.+.+.+++.+...||.|+.|..|.+.+....-+ .+ .++..++.. ...+.=+||++.-|++......+. +....|
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~-~~--~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~-~~~~~~ 78 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAELFD-GG--LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNL-NRKNKP 78 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHhcc-CC--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHh-cCCCCC
Confidence 4567788999999999999999998886554321 11 112344432 234445688888888877777765 334689
Q ss_pred cEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCch--------hHHHHHHHHHHHHHHHHHHcCC
Q 046808 369 IRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLED--------QIKDEIRAVLDLTEEILLQFGF 429 (653)
Q Consensus 369 ~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~--------~~~d~~~e~l~~~~~il~~lGl 429 (653)
+++|++|+||..+.. ..+|.....+-+-|... ...+ +.++-.....++..+|+
T Consensus 79 ~~lFEiG~vf~~~~~-------~~~e~~~l~~~~~g~~~~~~w~~~~~~~~-f~~~Kg~ve~ll~~l~~ 139 (198)
T cd00769 79 LRLFEIGRVFLKDED-------GPEEEEHLAALLSGNREPESWQGKGRPVD-FYDAKGILEALLRALGI 139 (198)
T ss_pred EeEEEeEeEEecCCC-------CCcchheEEEEEECCCccccccCCCCccC-HhhHHHHHHHHHHHcCC
Confidence 999999999965321 11244444344444321 1123 45677788888888887
No 134
>PLN02788 phenylalanine-tRNA synthetase
Probab=94.47 E-value=0.51 Score=50.94 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=78.7
Q ss_pred CccccHHHHHHHHHHHHHHHhc---CCeEEe--cCccCchhhhhhc----CcccccccccceecccCCceEEeccCChHH
Q 046808 282 HPKGSIVRHIIEDFWKKSHIEH---DYDLLY--TPHVAKADLWKIS----GHLDFYRENMYDQMNIEDELYQLRPMNCPY 352 (653)
Q Consensus 282 lP~g~~l~~~I~~~~~~~~~~~---G~~~I~--tP~le~~~l~~~s----g~~~~~~~~~y~~~d~~~~~l~LrP~~~~~ 352 (653)
++....-...+.+.+.+.|... ||+.+. .|+.....-|..- .|-..-..+.|-+ +...+||.-|.+.
T Consensus 63 ~~~~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~----~~~~lLRTHTSa~ 138 (402)
T PLN02788 63 HRRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYV----DAQTVLRCHTSAH 138 (402)
T ss_pred CCCCCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEe----cCCccccCCCcHH
Confidence 3344444566677777777765 999998 4554333223221 2221111233443 2457899866555
Q ss_pred HHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHH--------HHHHHHHHHHHHHH
Q 046808 353 HILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIK--------DEIRAVLDLTEEIL 424 (653)
Q Consensus 353 ~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~--------d~~~e~l~~~~~il 424 (653)
..+++.+. .| ++...|.|||+|.-.++ -+-+|+|.|.-.+...++.. -....+......++
T Consensus 139 q~~~l~~~------~~-~~~~~g~VyRrD~iD~t----H~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~ 207 (402)
T PLN02788 139 QAELLRAG------HT-HFLVTGDVYRRDSIDAT----HYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLA 207 (402)
T ss_pred HHHHHHhC------CC-cEEEEeeEeecCCCCcc----cCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHH
Confidence 55555431 24 89999999999985522 66899999998886432110 01234556666777
Q ss_pred HHc-CCC
Q 046808 425 LQF-GFN 430 (653)
Q Consensus 425 ~~l-Gl~ 430 (653)
..| |+.
T Consensus 208 ~~lfg~~ 214 (402)
T PLN02788 208 RHLFGDV 214 (402)
T ss_pred HHhcCCC
Confidence 776 763
No 135
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=93.53 E-value=0.014 Score=45.26 Aligned_cols=36 Identities=8% Similarity=0.042 Sum_probs=30.6
Q ss_pred ccccccCCCCCcccccCcccccccccCCCCeEEEee
Q 046808 48 ATSVATEPAETPSVTQNGKVEQAQMTSETEKVVLPT 83 (653)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 83 (653)
.++..++-.+.+|.+||++||++++++.||.|++++
T Consensus 25 ~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 25 SIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp HHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred HHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 455667778889999999999999999999999975
No 136
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=93.53 E-value=0.072 Score=55.15 Aligned_cols=133 Identities=14% Similarity=0.195 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEecCccCchhhhhh------cCcccccccccceecc-------------------------
Q 046808 289 RHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKI------SGHLDFYRENMYDQMN------------------------- 337 (653)
Q Consensus 289 ~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~------sg~~~~~~~~~y~~~d------------------------- 337 (653)
..++..-+|++|-..||.||-|--...+..|.= -.|...=..+.|-+.|
T Consensus 214 LmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~G~yg 293 (483)
T KOG2784|consen 214 LMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQGGYG 293 (483)
T ss_pred HHHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHHhcCCcC
Confidence 457788889999999999988776555544421 0111000011222211
Q ss_pred ----------cCCceEEeccCChH-HHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCc
Q 046808 338 ----------IEDELYQLRPMNCP-YHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE 406 (653)
Q Consensus 338 ----------~~~~~l~LrP~~~~-~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~ 406 (653)
.+-+...||--++. .++.+|+-. ...-.|-|++.|-+|||+|.-.+ - -+-||+|.+..+.+..
T Consensus 294 s~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LA--k~~f~p~K~FSIDrVFRNEtvDa--T--HLAEFHQVEGviad~g 367 (483)
T KOG2784|consen 294 SIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLA--KKGFKPAKYFSIDRVFRNETVDA--T--HLAEFHQVEGVIADKG 367 (483)
T ss_pred CcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHH--hCCCCcccccchhhhhhccccch--H--HHHHHhhhceeeecCC
Confidence 11245677774443 444444332 21235999999999999999762 3 6779999999886655
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCe
Q 046808 407 DQIKDEIRAVLDLTEEILLQFGFNK 431 (653)
Q Consensus 407 ~~~~d~~~e~l~~~~~il~~lGl~~ 431 (653)
=...| ++.+..+++.++|+.+
T Consensus 368 ltLgd----Lig~l~~ff~~lg~tn 388 (483)
T KOG2784|consen 368 LTLGD----LIGILMEFFTKLGATN 388 (483)
T ss_pred CcHHH----HHHHHHHHHhccCCcc
Confidence 44544 7889999999999964
No 137
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=92.11 E-value=0.34 Score=51.05 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=69.0
Q ss_pred ecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc---c----CCceEEeccCChHH
Q 046808 280 FWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN---I----EDELYQLRPMNCPY 352 (653)
Q Consensus 280 ~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d---~----~~~~l~LrP~~~~~ 352 (653)
+....-+++++++.......|..++|..|.||++...|-- |. -+||.+.. - -|+...|.- +...
T Consensus 126 ~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCE---Ga-----GE~F~vtt~~d~~~~fFg~p~fLTV-SgQL 196 (446)
T KOG0554|consen 126 AKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCE---GA-----GEVFQVTTLTDYSKDFFGRPAFLTV-SGQL 196 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCC---CC-----cceEEEEecCcccccccCCceEEEE-ecee
Confidence 3455678999999999999999999999999999665311 11 24554421 1 133333321 1222
Q ss_pred HHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee
Q 046808 353 HILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF 403 (653)
Q Consensus 353 ~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if 403 (653)
+...++-.+ -|.|-+|++||.|.+.. .- -+-||+|.|+++-
T Consensus 197 hlE~~a~~L-------srvyTfgP~FRAEnS~t-sR--HLAEFwMlEaE~A 237 (446)
T KOG0554|consen 197 HLEAMACAL-------SRVYTFGPTFRAENSHT-SR--HLAEFWMLEAELA 237 (446)
T ss_pred hHHHHHhhh-------cceEeeccceecccCCc-hh--HHhhhhhhhhHHH
Confidence 333332222 27899999999999873 22 4679999999973
No 138
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=90.77 E-value=1.4 Score=50.67 Aligned_cols=134 Identities=13% Similarity=0.066 Sum_probs=84.0
Q ss_pred cHHHHHHHHHHHHHHHhcCCeEEecCccCchhh-hhhcCcccccccccceecc-cCCceEEeccCChHHHHHHHHhhhcc
Q 046808 286 SIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADL-WKISGHLDFYRENMYDQMN-IEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 286 ~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l-~~~sg~~~~~~~~~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
..-.+++.+.+|+.+...||+|+.|-+|.+.+. +..-+..+. .+...++.. ...+.=+||++--|++....+.+.+
T Consensus 396 ~~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~-~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~- 473 (597)
T PLN02265 396 QQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDD-GNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKD- 473 (597)
T ss_pred CCHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCcc-CCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhc-
Confidence 345688889999999999999999999988754 543221110 112233322 2334446888878877776766543
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
+.+|+|+|++|.||-.+... ..| .||-....+-+.|.. .+ +.++-.+...++..||++
T Consensus 474 -~~~p~klFEiG~V~~~~~~~-~~~---~~e~~~la~~~~g~~---~~-f~~ikg~le~ll~~l~i~ 531 (597)
T PLN02265 474 -APKPIKLFEVSDVVLLDESK-DVG---ARNSRRLAALYCGTT---SG-FEVIHGLVDRIMEVLGIP 531 (597)
T ss_pred -CCCCeeEEEeEeEEecCCcc-cCC---cchhhEEEEEEECCC---CC-HhhHHHHHHHHHHHcCCc
Confidence 34699999999999543211 011 134444444444432 22 356777888899999985
No 139
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=90.68 E-value=0.39 Score=50.17 Aligned_cols=66 Identities=18% Similarity=0.368 Sum_probs=44.2
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEE
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVN 435 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~ 435 (653)
...++|+|++.|-+|||.|+... .. |+--++-+-+.+++.+-...+- -+.+..+|+.||+..|..+
T Consensus 202 ~r~~~PlklFSIDRCFRREQ~ED-~s--hLmtYhSASCVvvde~vtvD~G----KaVAEglL~qfGFe~F~Fr 267 (536)
T COG2024 202 KREDPPLKLFSIDRCFRREQRED-AS--HLMTYHSASCVVVDEDVTVDDG----KAVAEGLLRQFGFEKFRFR 267 (536)
T ss_pred hccCCCceeeehhHHhhhhhhcc-hh--hhhhhccceEEEEcCccccccc----HHHHHHHHHHhCccceeec
Confidence 34589999999999999998753 23 4434445555555544333331 2567888999999777653
No 140
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=90.13 E-value=1.6 Score=49.80 Aligned_cols=133 Identities=13% Similarity=0.114 Sum_probs=88.2
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhh-hhcCcccccccccceecc-cCCceEEeccCChHHHHHHHHhhhc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLW-KISGHLDFYRENMYDQMN-IEDELYQLRPMNCPYHILVYQRKLQ 362 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~-~~sg~~~~~~~~~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~~ 362 (653)
+....+.+.+.+++.+...||+|+.|-.|.+.+.. ..-+. + .++..++.. ...+.=+||++.-|++......+.
T Consensus 360 ~~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~-~--~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~- 435 (551)
T TIGR00471 360 RLKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRI-E--DNNDVKVANPKTLEYTIVRTSLLPGLLETLSENK- 435 (551)
T ss_pred CcChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhcc-C--CCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcc-
Confidence 34456788888999999999999999999887443 33221 1 112233332 234455799988898888777765
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
.+..|+|+|++|+||...... . .+.+++.+..+-+.|.. .+ +.++-.....++..||++
T Consensus 436 -~~~~~~~lFEiG~Vf~~~~~~---~-~~e~~~~~l~~~~~g~~---~d-f~d~Kg~ve~ll~~l~i~ 494 (551)
T TIGR00471 436 -HHELPQKIFEIGDVVVKDDKS---E-TRSRVVTKLAVGITHSE---AN-FNEIKSIVAALARELGIE 494 (551)
T ss_pred -cCCCCeeEEEEEEEEEcCCcc---c-cccceeeEEEEEEECCC---CC-HHHHHHHHHHHHHHcCCc
Confidence 357899999999999543211 1 13445565555555532 23 356777888888999984
No 141
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=85.20 E-value=2.6 Score=46.75 Aligned_cols=87 Identities=18% Similarity=0.316 Sum_probs=55.5
Q ss_pred CceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHH
Q 046808 340 DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDL 419 (653)
Q Consensus 340 ~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~ 419 (653)
...-+||+...|+.....+.++ +..+.|+++|++|+|||.+.... .- ++..+.+.. .+ ..+ ...+ +.++...
T Consensus 181 ~~~svLRtSLlPGLL~tLs~Nl-~Rg~~piRLFEIGRVFr~d~~eE-~t--~La~llsGs-~W-~~~-e~vD-FfDlKGi 252 (529)
T PRK06253 181 SSRLTLRSHMTSGWFITLSSLL-EKRPLPIKLFSIDRCFRREQRED-AS--RLMTYHSAS-CV-IAD-EDVT-VDDGKAV 252 (529)
T ss_pred cccCccccchHHHHHHHHHHHH-hCCCCCEEEEEEeeEEecCCccc-hh--heeEEEEcc-cc-ccC-CCCC-HHHHHHH
Confidence 4556799999998877776665 34578999999999998753210 11 333444431 11 122 2123 4567788
Q ss_pred HHHHHHHcCCCeEEE
Q 046808 420 TEEILLQFGFNKYEV 434 (653)
Q Consensus 420 ~~~il~~lGl~~~~v 434 (653)
+..++..||++.+.+
T Consensus 253 LE~LL~~LGI~~i~f 267 (529)
T PRK06253 253 AEGLLSQFGFTKFKF 267 (529)
T ss_pred HHHHHHHcCCCeEEE
Confidence 889999999963443
No 142
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.85 E-value=2.1 Score=45.17 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccC
Q 046808 286 SIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYR 365 (653)
Q Consensus 286 ~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~ 365 (653)
.+++..+.+.+|+.+...||.+|.+|+|..+.|-- +..+|++ |--|++-+|-- ...+|....
T Consensus 243 LK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEG--------GsTLFkl-dYyGEeAyLTQ-----SSQLYLEtc---- 304 (545)
T KOG0555|consen 243 LKARAALLRAMRDHYFERGYTEVTPPTMVQTQVEG--------GSTLFKL-DYYGEEAYLTQ-----SSQLYLETC---- 304 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCceecCCCceEEEEecC--------cceEEee-cccCchhhccc-----hhHHHHHHh----
Confidence 35788889999999999999999999998876542 2345554 33344443421 112222211
Q ss_pred CCC--cEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCchhHHH
Q 046808 366 DFP--IRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKD 411 (653)
Q Consensus 366 ~lP--~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~~~~~d 411 (653)
+| -.+|.|...||.|++-. +- -+-||+..+++. |-+-+...+
T Consensus 305 -lpAlgdvy~I~~SyRAEkSrT-RR--HLsEytHVEaE~afltfd~ll~ 349 (545)
T KOG0555|consen 305 -LPALGDVYCIQQSYRAEKSRT-RR--HLSEYTHVEAECAFLTFDDLLD 349 (545)
T ss_pred -hhhcCceeEecHhhhhhhhhh-hh--hhhhheeeeeecccccHHHHHH
Confidence 22 37899999999999863 33 467999999996 333344444
No 143
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=80.89 E-value=1 Score=33.91 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=24.4
Q ss_pred CCcccccCcccccccccCCCCeEEEeec
Q 046808 57 ETPSVTQNGKVEQAQMTSETEKVVLPTN 84 (653)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 84 (653)
.+++.+||.++|+++++..|++|++++.
T Consensus 34 ~v~~~vng~~~dL~~~l~~~~~ie~i~~ 61 (61)
T cd01667 34 AVAAKVNGELVDLSRPLEEDCELEIITF 61 (61)
T ss_pred eEEEEECCEEecCCcCcCCCCEEEEEeC
Confidence 3567799999999999999999999863
No 144
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=80.10 E-value=11 Score=41.45 Aligned_cols=109 Identities=19% Similarity=0.239 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHH----hcCCeEEec--CccCchhhhhhcC----cccccccccceecccCCceEEeccCChHHHHHH
Q 046808 287 IVRHIIEDFWKKSHI----EHDYDLLYT--PHVAKADLWKISG----HLDFYRENMYDQMNIEDELYQLRPMNCPYHILV 356 (653)
Q Consensus 287 ~l~~~I~~~~~~~~~----~~G~~~I~t--P~le~~~l~~~sg----~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~ 356 (653)
.+++.|++++..... .-||+.... |+.....-|..-+ |-..-..+.|-+ ++..+||.-|.+...++
T Consensus 46 ~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi----~~~~lLRTHTSa~q~~~ 121 (460)
T TIGR00469 46 IIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYI----NEQHLLRAHTSAHELEC 121 (460)
T ss_pred HHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEe----cCCceeCCCCcHHHHHH
Confidence 344555555443321 117888887 8554444443322 221112333443 35688998666665666
Q ss_pred HHhhhcccCCCCcE--EEEeeeeeecCCCCCCCCcceeceeEEcceeeeeC
Q 046808 357 YQRKLQSYRDFPIR--VAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL 405 (653)
Q Consensus 357 ~~~~~~s~~~lP~r--l~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~ 405 (653)
+.+.... ..|++ +...|.|||++.-- .- -+-.|+|.|.-.+..
T Consensus 122 ~~~~~~~--~~~~~~~~i~~G~VYRrD~iD--at--H~p~FHQ~EG~~v~~ 166 (460)
T TIGR00469 122 FQGGLDD--SDNIKSGFLISADVYRRDEID--KT--HYPVFHQADGAAIRK 166 (460)
T ss_pred HHhcccc--CCCcceeeEeecceeeCCCCc--cc--cCccceeeEEEEEec
Confidence 6543221 25888 88899999998754 22 667999999665544
No 145
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=72.82 E-value=18 Score=33.37 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=50.2
Q ss_pred EEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCC--EEEeccccc-CeeEEEecCCCCCHHHHHHHHHHHHHHHh
Q 046808 79 VVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDA--KVTIGPWIE-NGFYYDFDMEPLTDKDLKRIKKEMDRIIG 150 (653)
Q Consensus 79 V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~--~~~~~~~~~-~g~~~d~~~~~lt~~~l~~Ie~~m~~iI~ 150 (653)
|.|+.-+..--...--||+.||++.-+|+-..+. .+-+++.-- .|||.-+.+.+=+++-++.++..|+++.+
T Consensus 38 iRf~qPNke~m~~~~iHTlEHL~A~~iRnh~~g~~~iID~SPMGCrTGFYm~l~G~~~~~~i~~~~~~~m~dvl~ 112 (161)
T COG1854 38 IRFCQPNKEIMPPAGIHTLEHLLAGFIRNHLNGNVEIIDISPMGCRTGFYMILIGTPTSQDIADVLEATMKDVLK 112 (161)
T ss_pred EEEecCChhhCCccchhhHHHHHHHHHHhcccCceeEEEecCcccccceEEEEECCCCHHHHHHHHHHHHHHHHc
Confidence 3444444444455667999999999999865432 233344322 79999888766667778889999999987
No 146
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=68.69 E-value=3 Score=31.05 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=23.8
Q ss_pred CCCcccccCcccccccccCCCCeEEEee
Q 046808 56 AETPSVTQNGKVEQAQMTSETEKVVLPT 83 (653)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 83 (653)
...++.+||+++|+++++..|++|++++
T Consensus 33 ~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 33 GFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred heEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 3355679999999999999999999874
No 147
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=67.61 E-value=15 Score=42.78 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=65.5
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceec-ccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM-NIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~-d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
+....+...+.+++.+...||+|+.|-.|.+.+.....+.... +..++. -...+.-+||++.-|+....+..+.
T Consensus 349 ~~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~---~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~-- 423 (650)
T COG0072 349 GLTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLEND---EALELANPISEEYSVLRTSLLPGLLEALSYNK-- 423 (650)
T ss_pred CCChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCCC---cceEecCCcchhHHHHHHHHHHHHHHHHHHhh--
Confidence 3556777888899999999999999999999988776544321 112221 1223344577777776666665543
Q ss_pred cCCCC-cEEEEeeeeeecCCC
Q 046808 364 YRDFP-IRVAELGTVYRYELS 383 (653)
Q Consensus 364 ~~~lP-~rl~~~g~~fR~E~~ 383 (653)
.++.| +++|++|.+|-.+..
T Consensus 424 ~r~~~~~~iFEiG~v~~~~~~ 444 (650)
T COG0072 424 NRKNPDVRIFEIGDVFVKDEE 444 (650)
T ss_pred ccCCCCeeEEEeeeeEecCCc
Confidence 35789 999999999997643
No 148
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=63.84 E-value=14 Score=30.13 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHH
Q 046808 131 EPLTDKDLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIM 170 (653)
Q Consensus 131 ~~lt~~~l~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~~~ 170 (653)
+++|-+.+..|.++||++.+.++-=.++.|+.+-..++..
T Consensus 43 ~pFs~d~IN~vT~~mN~LAk~givP~Rk~VT~eMV~EYv~ 82 (84)
T PF10752_consen 43 EPFSTDKINEVTKEMNELAKQGIVPTRKYVTVEMVKEYVS 82 (84)
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCCCcchhccHHHHHHHHh
Confidence 6899999999999999999999888899999887776543
No 149
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=63.02 E-value=24 Score=35.30 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCceEEEEecCh------------hhHHHHHHHHHHHHhCCCeEEEeCCCCHHHHHHHHH
Q 046808 534 LERFFGVLIEHYAGDFPLWLSPIQARVLPVTD------------TQLEYCNEVIKKLKTNGIRAEICHGERLPKLIRNAE 601 (653)
Q Consensus 534 ieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~------------~~~~~a~~la~~Lr~~Gi~v~~d~~~~~~kk~~~A~ 601 (653)
-+.++....+ +.|.+|.++|-.. ...+...++.+.|+++||+|.+..+-. ..+++.|.
T Consensus 72 ~~emi~ia~~---------vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~-~~qi~~A~ 141 (237)
T TIGR00559 72 TEEMIRIAEE---------IKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD-KDQISAAA 141 (237)
T ss_pred CHHHHHHHHH---------cCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHH
Confidence 5566665554 4689999998752 245667788999999999999887323 67999999
Q ss_pred HcCCCEEE
Q 046808 602 KQKIPLMA 609 (653)
Q Consensus 602 ~~gip~~i 609 (653)
+.|++.+=
T Consensus 142 ~~GAd~VE 149 (237)
T TIGR00559 142 EVGADRIE 149 (237)
T ss_pred HhCcCEEE
Confidence 99999763
No 150
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=62.88 E-value=13 Score=43.65 Aligned_cols=128 Identities=15% Similarity=0.093 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc-cCCceEEeccCChHHHHHHHHhhhcc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN-IEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
+....+.+.+.+++.+...||+|+.|-.|.+.+.+ .+...++.. ...+.=+||++--|++...+..+. +
T Consensus 396 ~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~---------~~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~-~ 465 (704)
T CHL00192 396 RLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQESF---------SKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENL-K 465 (704)
T ss_pred CCCHHHHHHHHHHHHHHhCCCceEecccccChhhc---------CCCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHH-h
Confidence 44556777888899999999999999999877532 112333332 234445688888888777777665 3
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeC---------chhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL---------EDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~---------~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
....|+|+|++|.||-... . + .+|-....+-+.|. +....| +.++-.....++..+|++
T Consensus 466 r~~~~~rlFEiG~Vf~~~~-~---~---~~e~~~la~~~~g~~~~~~~w~~~~~~~d-F~d~Kg~le~ll~~l~i~ 533 (704)
T CHL00192 466 QGNSTLEGFEIGHVFNLDS-S---S---IIEETELAGGIFGGIDIRSSWSEKAQSLN-WFEAKGIIENFFQKLNLP 533 (704)
T ss_pred cCCCCEeEEEeeeeEcCCC-c---c---ccccceEEEEEECCCcCccccCCCCCccC-HHHHHHHHHHHHHHCCCc
Confidence 3468999999999994311 1 1 12222222223332 111223 456777888888999984
No 151
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=62.74 E-value=14 Score=44.14 Aligned_cols=133 Identities=16% Similarity=0.104 Sum_probs=78.2
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc-cCCceEEeccCChHHHHHHHHhhhcc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN-IEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.....+.+.+.+++.+...||+|+.|-.|.+.+....-+ .+ ....++.. ...+.=+||++--|++...+..+. +
T Consensus 485 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~-~~---~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~-~ 559 (791)
T PRK00629 485 GLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKLFG-LN---PEPLLLLNPISEELSVMRTSLLPGLLEAVAYNL-N 559 (791)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHhcC-CC---CCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHH-h
Confidence 344566777888888899999999999888775544211 11 11222221 223344577777777777666654 3
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCch-------hHHHHHHHHHHHHHHHHHHcCCC
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLED-------QIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~-------~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
....|+++|++|+||.... + ..+|-....+-+-|... ...| +.++-.....++..||++
T Consensus 560 ~~~~~i~lFEiG~Vf~~~~-----~--~~~e~~~la~~~~g~~~~~~w~~~~~~d-f~~~Kg~le~ll~~l~~~ 625 (791)
T PRK00629 560 RGNKDVALFEIGRVFLPDG-----D--LPREPEHLAGVLTGNRVEESWGGKRPVD-FFDLKGDVEALLEALGLP 625 (791)
T ss_pred CCCCCEeEEeeeeeeCCCC-----C--CCcchhEEEEEEECCCccccccccCCCC-HHHHHHHHHHHHHHcCCC
Confidence 3457999999999995421 0 01122222222222110 1123 456777888888889885
No 152
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=62.25 E-value=46 Score=33.36 Aligned_cols=65 Identities=23% Similarity=0.347 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCceEEEEecCh------------hhHHHHHHHHHHHHhCCCeEEEeCCCCHHHHHHHHH
Q 046808 534 LERFFGVLIEHYAGDFPLWLSPIQARVLPVTD------------TQLEYCNEVIKKLKTNGIRAEICHGERLPKLIRNAE 601 (653)
Q Consensus 534 ieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~------------~~~~~a~~la~~Lr~~Gi~v~~d~~~~~~kk~~~A~ 601 (653)
.+.++...++. .|.+|.++|-.. ...+.-..+.++|+++||+|.+..+-. ..+++.|.
T Consensus 73 t~e~~~ia~~~---------kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~-~~qi~~A~ 142 (239)
T PF03740_consen 73 TEEMVDIALKV---------KPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPD-PEQIEAAK 142 (239)
T ss_dssp SHHHHHHHHHH-----------SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S--HHHHHHHH
T ss_pred CHHHHHHHHhC---------CcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCC-HHHHHHHH
Confidence 56667666553 688999999762 346778899999999999999887333 57899999
Q ss_pred HcCCCEE
Q 046808 602 KQKIPLM 608 (653)
Q Consensus 602 ~~gip~~ 608 (653)
+.|++.+
T Consensus 143 ~~Gad~V 149 (239)
T PF03740_consen 143 ELGADRV 149 (239)
T ss_dssp HTT-SEE
T ss_pred HcCCCEE
Confidence 9999975
No 153
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=61.67 E-value=4.9 Score=30.43 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=23.7
Q ss_pred CCCcccccCcccccccccCCCCeEEEee
Q 046808 56 AETPSVTQNGKVEQAQMTSETEKVVLPT 83 (653)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 83 (653)
...+..+||+++|+++++..|++|++++
T Consensus 33 ~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 33 RCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred heEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 3356669999999999999999999874
No 154
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=61.30 E-value=27 Score=34.86 Aligned_cols=66 Identities=24% Similarity=0.393 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCceEEEEecCh------------hhHHHHHHHHHHHHhCCCeEEEeCCCCHHHHHHHHH
Q 046808 534 LERFFGVLIEHYAGDFPLWLSPIQARVLPVTD------------TQLEYCNEVIKKLKTNGIRAEICHGERLPKLIRNAE 601 (653)
Q Consensus 534 ieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~------------~~~~~a~~la~~Lr~~Gi~v~~d~~~~~~kk~~~A~ 601 (653)
.+.++...++ +.|.+|.++|-.. ...+....+.++|+++||+|.+..+-. ..+++.|.
T Consensus 72 t~em~~ia~~---------~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd-~~qi~~A~ 141 (234)
T cd00003 72 TEEMLEIALE---------VKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD-PEQIEAAK 141 (234)
T ss_pred CHHHHHHHHH---------CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHH
Confidence 4555655544 4789999998752 245667788999999999998877333 57999999
Q ss_pred HcCCCEEE
Q 046808 602 KQKIPLMA 609 (653)
Q Consensus 602 ~~gip~~i 609 (653)
+.|++.+=
T Consensus 142 ~~GAd~VE 149 (234)
T cd00003 142 EVGADRVE 149 (234)
T ss_pred HhCcCEEE
Confidence 99999763
No 155
>PF02664 LuxS: S-Ribosylhomocysteinase (LuxS); InterPro: IPR003815 In bacteria, the regulation of gene expression in response to changes in cell density is called quorum sensing. Quorum-sensing bacteria produce, release, and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. For example, enteric bacteria use quorum sensing to regulate several traits that allow them to establish and maintain infection in their host, including motility, biofilm formation, and virulence-specific genes []. The LuxS/AI-2 system is one of several quorum sensing mechanisms. AI-2 (autoinducer-2) is a signalling molecule that functions in interspecies communication by regulating niche-specific genes with diverse functions in various bacteria, often in response to population density. LuxS (S-ribosylhomocysteinase; 4.4.1.21 from EC) is an autoinducer-production protein that has a metabolic function as a component of the activated methyl cycle. LuxS converts S-ribosylhomocysteine to homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD); DPD can then spontaneously cyclise to active AI-2 [, ]. LuxS is a homodimeric iron-dependent metalloenzyme containing two identical tetrahedral metal-binding sites similar to those found in peptidases and amidases []. ; GO: 0005506 iron ion binding, 0009372 quorum sensing; PDB: 1J6X_B 1VGX_A 1INN_B 1VJE_B 1J6V_A 1VH2_A 1J6W_B 1JOE_B 1J98_A 1IE0_A ....
Probab=56.77 E-value=58 Score=30.39 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCC---CEEEeccccc-CeeEEEecCCCCCHHHHHHHHHHHHHHHhcC
Q 046808 85 ESNEQLLRIRHTCAHVMAMAVQKLYPD---AKVTIGPWIE-NGFYYDFDMEPLTDKDLKRIKKEMDRIIGRN 152 (653)
Q Consensus 85 ~~~~~~~~~~hS~~hlL~~A~~~l~~~---~~~~~~~~~~-~g~~~d~~~~~lt~~~l~~Ie~~m~~iI~~~ 152 (653)
+..--...-.||+.||++.-+++-..+ ..+-+|+.-- .|||.-+.+..=+++-++.+++-++.++..+
T Consensus 43 N~e~m~~~~lHTlEHL~A~~lRn~~~~~~~~iI~~gPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~ 114 (157)
T PF02664_consen 43 NKEVMDTAALHTLEHLFATYLRNHLDGDKDKIIDFGPMGCRTGFYLILWGDPSSEDIADLLKETLEFILEFE 114 (157)
T ss_dssp TTB---HHHHHHHHHHHHHHHHHHHSCTTEEEEEEEE-TTSSEEEEEEESS--HHHHHHHHHHHHHHHHT-S
T ss_pred chhhCCCcchhHHHHHHHHHHhcCccCCCCeEEEecCcccccccEEEEeCCCCHHHHHHHHHHHHHHHHhcC
Confidence 344556778899999999999997643 2344455433 7999877653223455688888888888754
No 156
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=56.51 E-value=36 Score=34.03 Aligned_cols=66 Identities=23% Similarity=0.363 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCceEEEEecCh------------hhHHHHHHHHHHHHhCCCeEEEeCCCCHHHHHHHHH
Q 046808 534 LERFFGVLIEHYAGDFPLWLSPIQARVLPVTD------------TQLEYCNEVIKKLKTNGIRAEICHGERLPKLIRNAE 601 (653)
Q Consensus 534 ieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~------------~~~~~a~~la~~Lr~~Gi~v~~d~~~~~~kk~~~A~ 601 (653)
-+.++....+ +.|.+|.++|-.. ...+.-..+.++|+++||+|.+..+ .-..+++.|.
T Consensus 75 ~~em~~ia~~---------~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid-P~~~qi~~A~ 144 (239)
T PRK05265 75 TEEMLDIALE---------VKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID-PDPEQIEAAA 144 (239)
T ss_pred CHHHHHHHHH---------CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHH
Confidence 4566655544 4788999998752 2456677889999999999998774 3346899999
Q ss_pred HcCCCEEE
Q 046808 602 KQKIPLMA 609 (653)
Q Consensus 602 ~~gip~~i 609 (653)
+.|++.+=
T Consensus 145 ~~GAd~VE 152 (239)
T PRK05265 145 EVGADRIE 152 (239)
T ss_pred HhCcCEEE
Confidence 99999763
No 157
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=54.66 E-value=30 Score=41.51 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc-cCCceEEeccCChHHHHHHHHhhhcccCCC
Q 046808 289 RHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN-IEDELYQLRPMNCPYHILVYQRKLQSYRDF 367 (653)
Q Consensus 289 ~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~~s~~~l 367 (653)
.+...+.+++.+...||+|+.|-.|.+.+.+..-+. +. .+...++.. ...+.=+||+.--|++......+. .....
T Consensus 493 ~~~~~~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~-~~-~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~-~~~~~ 569 (798)
T TIGR00472 493 NYLLLRKLRTLLVGLGLNEVITYSLVSSEKAEKFNF-PK-LENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQ-NRKNK 569 (798)
T ss_pred HHHHHHHHHHHHHHCCCcEEeccccCCHHHHHhhcC-CC-CCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHH-hCCCC
Confidence 444446788999999999999999988855543221 11 111333322 223334578877787777666654 33467
Q ss_pred CcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCc--------hhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 368 PIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE--------DQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 368 P~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~--------~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
|+++|++|.||.... . . .+|.....+-+-|.. ....+ +.++-.....++..+|+.
T Consensus 570 ~~~lFEiG~V~~~~~-~---~---~~e~~~La~~~~g~~~~~~~~~~~~~~d-f~d~Kg~le~ll~~l~~~ 632 (798)
T TIGR00472 570 DVKIFEIGKVFAKDG-L---G---VKEQLRLAILISGEKNPSSWNHKEEKVD-FYDLKGDVESLLELLGLS 632 (798)
T ss_pred CEeEEeeecccCCCC-C---C---cchhhEEEEEEECCCCcccccCCCCcCC-hHHHHHHHHHHHHHcCCC
Confidence 899999999994311 0 0 223333333333321 11123 457778888888888884
No 158
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=49.76 E-value=65 Score=30.17 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-C-EEEeccccc-CeeEEEecCCCCCHHHHHHHHHHHHHHH
Q 046808 88 EQLLRIRHTCAHVMAMAVQKLYPD-A-KVTIGPWIE-NGFYYDFDMEPLTDKDLKRIKKEMDRII 149 (653)
Q Consensus 88 ~~~~~~~hS~~hlL~~A~~~l~~~-~-~~~~~~~~~-~g~~~d~~~~~lt~~~l~~Ie~~m~~iI 149 (653)
--...-.||+.||++.-+|+-..+ . .+-+|+.-- .|||.-+.+..=+++-++.+++-++.+.
T Consensus 47 ~m~~~alHTlEHL~At~lRn~~~~~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~ 111 (158)
T PRK02260 47 AMPTAGIHTLEHLLAGFLRNHLDGGVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVL 111 (158)
T ss_pred hCCCcchhHHHHHHHHHHhhCccCCceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 445567899999999999984422 2 344455433 7999876543334555667777777775
No 159
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=45.33 E-value=67 Score=31.70 Aligned_cols=56 Identities=25% Similarity=0.415 Sum_probs=43.2
Q ss_pred CCCceEEEEecCh------------hhHHHHHHHHHHHHhCCCeEEEeCCCCHHHHHHHHHHcCCCEEE
Q 046808 553 LSPIQARVLPVTD------------TQLEYCNEVIKKLKTNGIRAEICHGERLPKLIRNAEKQKIPLMA 609 (653)
Q Consensus 553 lap~~v~Vi~~~~------------~~~~~a~~la~~Lr~~Gi~v~~d~~~~~~kk~~~A~~~gip~~i 609 (653)
..|.+|.++|-.. ...+.-..+.++|++.|++|.+..+ .-..+++.|...|+|++=
T Consensus 83 ~kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD-~d~~qi~aa~~~gA~~IE 150 (243)
T COG0854 83 TKPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFID-PDPEQIEAAAEVGAPRIE 150 (243)
T ss_pred cCCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeC-CCHHHHHHHHHhCCCEEE
Confidence 4688999998762 1245566788999999999998774 334689999999999863
No 160
>PF11513 TA0956: Thermoplasma acidophilum protein TA0956; InterPro: IPR021595 TA0956 is a protein from Thermoplasma acidophilum which currently has no known function however the structure has been determined. The protein has a two-layered alpha/beta-sandwich topology and is a putative Elongation factor 1-alpha binding motif. ; PDB: 2K24_A 2JMK_A.
Probab=42.47 E-value=1.7e+02 Score=24.61 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHhCCCeEEEeC
Q 046808 565 DTQLEYCNEVIKKLKTNGIRAEICH 589 (653)
Q Consensus 565 ~~~~~~a~~la~~Lr~~Gi~v~~d~ 589 (653)
++..+...++++..+..|++|+.|.
T Consensus 86 eNmK~~i~ei~kkykd~GykvE~d~ 110 (110)
T PF11513_consen 86 ENMKNSIEEIVKKYKDSGYKVEIDY 110 (110)
T ss_dssp CCHHHHHHHHHHHHHCCS-EEEEE-
T ss_pred HHHHHHHHHHHHHhhcCCceeeccC
Confidence 4566678899999999999999874
No 161
>PLN03194 putative disease resistance protein; Provisional
Probab=36.80 E-value=1.4e+02 Score=28.94 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=41.8
Q ss_pred CCCceEEEEecChhh-HHHHHHHHHHHHhCCCeEEEeC-C----CCHHHHHHHHHHcCCCEEEEECccc
Q 046808 553 LSPIQARVLPVTDTQ-LEYCNEVIKKLKTNGIRAEICH-G----ERLPKLIRNAEKQKIPLMAVVGAKE 615 (653)
Q Consensus 553 lap~~v~Vi~~~~~~-~~~a~~la~~Lr~~Gi~v~~d~-~----~~~~kk~~~A~~~gip~~iiiG~~e 615 (653)
-.++||+|=--+++. ...+.-|+..|+.+||+|.+|. . ..+...+..|-+.---.++|+.++-
T Consensus 24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Y 92 (187)
T PLN03194 24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRY 92 (187)
T ss_pred CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCc
Confidence 356899876555443 4678999999999999999987 3 4555556555433222345666543
No 162
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=34.37 E-value=1.9e+02 Score=25.71 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=38.5
Q ss_pred ceEEEEecC--hhhHHHHHHHHHHHHhCCCeEEEeC-C--CCHHHHHHHHHHcCCCEEEEECcccccC
Q 046808 556 IQARVLPVT--DTQLEYCNEVIKKLKTNGIRAEICH-G--ERLPKLIRNAEKQKIPLMAVVGAKEVDA 618 (653)
Q Consensus 556 ~~v~Vi~~~--~~~~~~a~~la~~Lr~~Gi~v~~d~-~--~~~~kk~~~A~~~gip~~iiiG~~e~~~ 618 (653)
++|+|.... ....+.+..|...|...|+.+..|+ . ......+..+-..--.+++++.++-+++
T Consensus 2 ~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S 69 (140)
T smart00255 2 YDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAES 69 (140)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECcccccC
Confidence 577777655 2445667788888888888888876 2 2222255555444334566777655433
No 163
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=34.08 E-value=1.3e+02 Score=30.62 Aligned_cols=62 Identities=18% Similarity=0.080 Sum_probs=34.1
Q ss_pred cccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 362 QSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 362 ~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
++..+-|.+.+|+.+|.|--..--..---|+.+++|.-+-+=-+|+. +.+++.+.|+.+||.
T Consensus 39 r~Lgpepw~vaYVqPsrRP~DGRYGeNPNRLq~y~QfQVilKPsP~n-------iq~lYL~SL~~lGId 100 (284)
T PF02091_consen 39 RALGPEPWNVAYVQPSRRPTDGRYGENPNRLQHYYQFQVILKPSPDN-------IQELYLESLEALGID 100 (284)
T ss_dssp TTSSSS-EEEEEEEEEE-GGG--TTTSSS--SEEEEEEEEEES--TT-------HHHHHHHHHHHCT--
T ss_pred HhcCCCCccccccccCCCCCCCccCCCchHhhhhheeEEEEcCCCcc-------HHHHHHHHHHHhCCC
Confidence 44557799999999999853221000011788888876554333333 345888999999994
No 164
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=32.53 E-value=1.6e+02 Score=27.78 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=42.5
Q ss_pred CCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-------CCCHHHHHHHHHHcCCCEEEEEC
Q 046808 554 SPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-------GERLPKLIRNAEKQKIPLMAVVG 612 (653)
Q Consensus 554 ap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-------~~~~~kk~~~A~~~gip~~iiiG 612 (653)
.+..|.|+.-+.+.-..++.+|+.|.+.|++|.+-. +.....+++.++..|++++-...
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 89 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDS 89 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCC
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccc
Confidence 445677776666667789999999999999999922 24477789999999988754433
No 165
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=29.76 E-value=3.2e+02 Score=25.41 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=39.4
Q ss_pred eEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-C--CCHHHHHHHH---HHcCCCEEEEE
Q 046808 557 QARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-G--ERLPKLIRNA---EKQKIPLMAVV 611 (653)
Q Consensus 557 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~--~~~~kk~~~A---~~~gip~~iii 611 (653)
+|.|+.-+......+.+.+..|++.|+.+++.. + ++..+-.++. +..|+..+|.+
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~ 62 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAV 62 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEE
Confidence 578888888888999999999999999998877 3 5555544444 44577755544
No 166
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=29.48 E-value=80 Score=38.41 Aligned_cols=59 Identities=20% Similarity=0.081 Sum_probs=38.5
Q ss_pred ccCCCCcEEEEeeeeeecCCCC--CCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 363 SYRDFPIRVAELGTVYRYELSG--SLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~--~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
+..+-|++.+|+.+|.|--.+- ..-- |+..++|.-+- ..|++. .+.++|.+.|+.+||.
T Consensus 46 ~l~~~~~~~ayv~p~~rp~d~ryg~npn--rl~~~~q~qvi--~kp~p~-----~~q~~yl~sl~~~gi~ 106 (1000)
T PRK14908 46 VLGPEPWRVAYVEPSRRPDDGRYGQNPN--RLQTYTQFQVI--LKPVPG-----NPQELYLESLKAIGID 106 (1000)
T ss_pred hcCCCCCcccccCCCCCCCCCCcCCCch--hhhhheeeEEE--ECCCCc-----cHHHHHHHHHHHcCCC
Confidence 3456799999999999842211 0111 77778886554 445441 2345888999999994
No 167
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=28.64 E-value=1.8e+02 Score=27.18 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHhCCCeEEEeC-C---CCHHHHHHHHHHcCCCEEEEECcc
Q 046808 566 TQLEYCNEVIKKLKTNGIRAEICH-G---ERLPKLIRNAEKQKIPLMAVVGAK 614 (653)
Q Consensus 566 ~~~~~a~~la~~Lr~~Gi~v~~d~-~---~~~~kk~~~A~~~gip~~iiiG~~ 614 (653)
-..+.|..+.+.|++.|++|.+.- . -++.++.+.|+..++-+.|-|=-+
T Consensus 25 ~~l~ia~~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~n 77 (175)
T PF01520_consen 25 INLDIALRLKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFN 77 (175)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeec
Confidence 356778999999999999998876 3 479999999999999998877544
No 168
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=27.36 E-value=1.9e+02 Score=26.31 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=36.8
Q ss_pred eEEEEecC--hhhHHHHHHHHHHHHhC-CCeEEEeC-CC----C--HHHHHHHHHHcCCCEEEEECc
Q 046808 557 QARVLPVT--DTQLEYCNEVIKKLKTN-GIRAEICH-GE----R--LPKLIRNAEKQKIPLMAVVGA 613 (653)
Q Consensus 557 ~v~Vi~~~--~~~~~~a~~la~~Lr~~-Gi~v~~d~-~~----~--~~kk~~~A~~~gip~~iiiG~ 613 (653)
.|+|+... ++..+...++|..||+. |+.|.+|. .. . ...-+..+ ...+-++|||=.
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~-~~~ad~Vliv~S 67 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQ-IREADKVLIVCS 67 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHH-HhcCCEEEEEec
Confidence 46676654 45667899999999999 99999997 32 2 22223333 445556665544
No 169
>PRK06437 hypothetical protein; Provisional
Probab=27.17 E-value=51 Score=25.99 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=25.4
Q ss_pred CCCCcccccCcccccccccCCCCeEEEeec
Q 046808 55 PAETPSVTQNGKVEQAQMTSETEKVVLPTN 84 (653)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 84 (653)
....+-.+|+++++.++++..|++|+++..
T Consensus 34 ~~~vaV~vNg~iv~~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 34 EEEYVVIVNGSPVLEDHNVKKEDDVLILEV 63 (67)
T ss_pred CccEEEEECCEECCCceEcCCCCEEEEEec
Confidence 445566699999999999999999999864
No 170
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=25.47 E-value=34 Score=41.45 Aligned_cols=117 Identities=14% Similarity=0.045 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhcCCeEEecCccCch--h-hhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccC
Q 046808 289 RHIIEDFWKKSHIEHDYDLLYTPHVAKA--D-LWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYR 365 (653)
Q Consensus 289 ~~~I~~~~~~~~~~~G~~~I~tP~le~~--~-l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~ 365 (653)
...|.+.+.+.|++.|...|..-.+.+. + |+-. ...|+.|++ ++.. ...
T Consensus 58 ~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dDllft-------~Agm~~Fkp------------------~f~~---G~~ 109 (902)
T TIGR03683 58 LDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLT-------IASIADFQP------------------WVTS---GLV 109 (902)
T ss_pred HHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCCeeEe-------ecchhhhhH------------------hhcC---CCC
Confidence 3577888888899999999977666662 1 2211 122333321 1110 001
Q ss_pred CCC-cEEEEeeeeeecCCCCCCCCcc-eec-eeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 046808 366 DFP-IRVAELGTVYRYELSGSLHGLF-RVR-GFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEV 434 (653)
Q Consensus 366 ~lP-~rl~~~g~~fR~E~~~~~~GL~-R~R-EF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v 434 (653)
+.| -++.-.++|.|-..-. .-|.- |=+ =|.|.+-+.||.++...=+-.|.+..++++|+.|||+.-.|
T Consensus 110 ~pp~~r~~~sQkCiR~nDld-nVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l~~lgi~~~~i 180 (902)
T TIGR03683 110 PPPANPLVISQPCIRLNDID-NVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFLEELGIDPEEI 180 (902)
T ss_pred CCCCCCceeccccccccccc-cccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHHHHcCCCHHHe
Confidence 112 2566677787742211 12211 322 46799999999887632233589999999997799975444
No 171
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=25.26 E-value=42 Score=39.44 Aligned_cols=37 Identities=11% Similarity=-0.029 Sum_probs=31.0
Q ss_pred cccCCCCCcccccCcccccccccCCCCeEEEeecCCh
Q 046808 51 VATEPAETPSVTQNGKVEQAQMTSETEKVVLPTNESN 87 (653)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~ 87 (653)
+...-...+|.|||.++++++++..|+.||+++....
T Consensus 415 t~iG~~c~gAkVNg~~vpL~~~L~~Gd~VeIiT~~~~ 451 (702)
T PRK11092 415 TDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPGA 451 (702)
T ss_pred chhhceeEEEEECCEECCCCccCCCCCEEEEEeCCCC
Confidence 3344556799999999999999999999999997543
No 172
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=25.18 E-value=2.9e+02 Score=21.77 Aligned_cols=44 Identities=25% Similarity=0.442 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCCEEEecccccCeeEEEecCCCCCHHHHHHHHHHHHHH
Q 046808 101 MAMAVQKLYPDAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRI 148 (653)
Q Consensus 101 L~~A~~~l~~~~~~~~~~~~~~g~~~d~~~~~lt~~~l~~Ie~~m~~i 148 (653)
|.+=+.+.||++.+.+.....+|+-.. + ..+++-+.|++.++++
T Consensus 13 L~kRl~~~yPd~~v~Vr~~s~~~l~v~--g--~~~~~k~~i~~iLqe~ 56 (65)
T PF06183_consen 13 LTKRLHRQYPDAEVRVRPGSANGLSVS--G--GKKDDKERIEEILQEM 56 (65)
T ss_dssp HHHHHHHH-SS-EEEEEEESS-EEEEE--S----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCceEeeeecccCccccC--C--cCchHHHHHHHHHHHH
Confidence 445577889999999999888987543 2 2344444555444444
No 173
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=25.06 E-value=4.2e+02 Score=22.35 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEeC--CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCC-CceeeeeHHHHHHHHH
Q 046808 568 LEYCNEVIKKLKTNGIRAEICH--GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFG-GELGTMKVDDFISRIK 644 (653)
Q Consensus 568 ~~~a~~la~~Lr~~Gi~v~~d~--~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~-~~q~~v~~~el~~~i~ 644 (653)
.-.+..+.+.+++.|+.+.+.. ...+...+...+-..+.+++++|+...+. .|-. ..-...++++.+..-.
T Consensus 15 ~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~~~~------~rf~gk~v~~~~~~~~l~~~~ 88 (96)
T cd05569 15 YMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPVDD------ERFAGKRVYEVSVAEAIKDAE 88 (96)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCCCch------hhhCCCeEEEecHHHHHHHHH
Confidence 4456778888889999999886 34455556556666778999999776433 2322 3445667777765555
Q ss_pred HHHh
Q 046808 645 SATE 648 (653)
Q Consensus 645 ~~~~ 648 (653)
..++
T Consensus 89 ~vl~ 92 (96)
T cd05569 89 AVIE 92 (96)
T ss_pred HHHH
Confidence 4444
No 174
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=24.81 E-value=56 Score=25.36 Aligned_cols=29 Identities=7% Similarity=0.083 Sum_probs=23.9
Q ss_pred CCCcccccCccccc----ccccCCCCeEEEeec
Q 046808 56 AETPSVTQNGKVEQ----AQMTSETEKVVLPTN 84 (653)
Q Consensus 56 ~~~~~~~~~~~~~~----~~~~~~~~~V~~~~~ 84 (653)
...+-.+|+++++. ++++..|++|+++..
T Consensus 29 ~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 29 NWLATAVNGELVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CeEEEEECCEEcCHHHcCccccCCCCEEEEEEe
Confidence 34567889999987 789999999999864
No 175
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=23.27 E-value=2.3e+02 Score=28.64 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHHHhCCCeEEEeC--CCCHHH-HHHHHHHcCCCEEEEECcccccCCeEEEEECCC
Q 046808 565 DTQLEYCNEVIKKLKTNGIRAEICH--GERLPK-LIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFG 628 (653)
Q Consensus 565 ~~~~~~a~~la~~Lr~~Gi~v~~d~--~~~~~k-k~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~ 628 (653)
++..+.-..|.++|++.||.+--.+ ++.... -+..+-+.-|||++|-.++|..-|-=.|+.|.|
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR~~iPFAVVGsd~e~~vnG~~vlGRkt 266 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVRESIPFAVVGSDKEIQVNGRRVLGRKT 266 (336)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHHhhCCeEEecccceEEEcCeEeecccc
Confidence 4555667789999999999887655 444433 445555678999988777777666556666654
No 176
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=22.99 E-value=4.4e+02 Score=21.81 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=37.2
Q ss_pred eEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCE--EEecccccCeeEEEecCCCCCHHHHHHHHHHHHHH
Q 046808 78 KVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAK--VTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRI 148 (653)
Q Consensus 78 ~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~--~~~~~~~~~g~~~d~~~~~lt~~~l~~Ie~~m~~i 148 (653)
.||++.+...-.-.-....+..=|..=+.+.||++. +.+.....+|+-. .+ .+.+|-+.|++.++++
T Consensus 2 rVEi~~dK~~~lp~ga~~AL~~EL~kRl~~~fPd~~~~v~Vr~~s~n~lsv--~g--~~k~dK~~i~eiLqE~ 70 (81)
T PRK10597 2 RIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSV--IG--ATKEDKDRISEILQET 70 (81)
T ss_pred eEEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCccEEEeecCCCceEe--cC--CCcchHHHHHHHHHHH
Confidence 456666543322222223344445555777899987 9999988888753 22 1223444455555544
No 177
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=22.42 E-value=3e+02 Score=25.65 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHHHhCCCeEEEeC-C---CCHHHHHHHHHHcCCCEEEEECccc
Q 046808 565 DTQLEYCNEVIKKLKTNGIRAEICH-G---ERLPKLIRNAEKQKIPLMAVVGAKE 615 (653)
Q Consensus 565 ~~~~~~a~~la~~Lr~~Gi~v~~d~-~---~~~~kk~~~A~~~gip~~iiiG~~e 615 (653)
+...+.+..++..|++.|++|.+.- + .++..+.+.|+..+.-+.|-+=-+.
T Consensus 25 ~~~~~ia~~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na 79 (172)
T cd02696 25 DINLAIALKLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANA 79 (172)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecC
Confidence 3456778999999999999998865 2 5899999999999999988775443
No 178
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=21.97 E-value=2.7e+02 Score=23.50 Aligned_cols=43 Identities=23% Similarity=0.464 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCCEEEecccccCeeEEEecCCCCCHHHHHHHHHHHHHHHhcCC
Q 046808 100 VMAMAVQKLYPDAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRIIGRNL 153 (653)
Q Consensus 100 lL~~A~~~l~~~~~~~~~~~~~~g~~~d~~~~~lt~~~l~~Ie~~m~~iI~~~~ 153 (653)
-|.+|+.+.||+....+ -|+||.. +. ++ ..-++-.++|+.+++
T Consensus 24 WL~aal~RKyp~~~f~~-------~YiDi~~-p~-~~--~~~~~~a~~I~ede~ 66 (93)
T PF07315_consen 24 WLEAALKRKYPDQPFEF-------TYIDIEN-PP-EN--DHDQQFAERILEDEL 66 (93)
T ss_dssp HHHHHHHHH-TTS-EEE-------EEEETTT--------HHHHHHHHHHHTTSS
T ss_pred HHHHHHhCcCCCCceEE-------EEEecCC-CC-cc--HHHHHHHHHHHhccc
Confidence 37889999999876553 3788864 22 22 344555666666654
No 179
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=21.85 E-value=8.2e+02 Score=24.99 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=48.1
Q ss_pred chHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEE
Q 046808 533 SLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVV 611 (653)
Q Consensus 533 gieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iii 611 (653)
|++|++..+.+. -.+-+++| +.-.+.+.++.+.+++.|+....-. ..+-.++++.-.+..-.|+-++
T Consensus 107 G~e~F~~~~~~a----------Gvdgviip--DLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~v 174 (263)
T CHL00200 107 GINKFIKKISQA----------GVKGLIIP--DLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred CHHHHHHHHHHc----------CCeEEEec--CCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 599998887664 22344443 2223567789999999999888877 6666778877666666677776
Q ss_pred Cc
Q 046808 612 GA 613 (653)
Q Consensus 612 G~ 613 (653)
+.
T Consensus 175 S~ 176 (263)
T CHL00200 175 ST 176 (263)
T ss_pred cC
Confidence 64
No 180
>PF09886 DUF2113: Uncharacterized protein conserved in archaea (DUF2113); InterPro: IPR016762 There is currently no experimental data for members of this group or their homologues. Based on distant sequence similarity, they may be tentatively predicted to be nucleic acid-binding proteins, they are also likely to be linked to methanogenesis or a process closely connected to it.
Probab=21.15 E-value=4.5e+02 Score=25.45 Aligned_cols=84 Identities=12% Similarity=0.172 Sum_probs=53.7
Q ss_pred cccccc--cccCCCCeEEEeecCChHH------HHH--HHHHHHHHHHHHHHHHcCC-CEEEecccccCeeEEEecCCCC
Q 046808 65 GKVEQA--QMTSETEKVVLPTNESNEQ------LLR--IRHTCAHVMAMAVQKLYPD-AKVTIGPWIENGFYYDFDMEPL 133 (653)
Q Consensus 65 ~~~~~~--~~~~~~~~V~~~~~~~~~~------~~~--~~hS~~hlL~~A~~~l~~~-~~~~~~~~~~~g~~~d~~~~~l 133 (653)
.||+.. ..+...+.-+.+++.+... +.+ -++++..=+..|+.+++|+ .++.-..+.++.|++=-+..++
T Consensus 91 kLW~kyGr~~V~QP~Rf~I~i~~~~~~~~~i~dlvV~Dp~~~l~~~v~da~~RI~PEGFRVr~~~~~~~~f~~vASE~~i 170 (188)
T PF09886_consen 91 KLWEKYGRENVDQPDRFEIIIDSDIDEAKDIEDLVVYDPSEDLKKKVYDAMFRIAPEGFRVRRHYYEGNSFAFVASEETI 170 (188)
T ss_pred HHHHHhCccccCCCCceEEEecCCcccccchhhcEEECcHHHHHHHHHHHHHHhCCCccEEeeccccCCeEEEEECCCCC
Confidence 355553 3455556666666554432 111 2567777788899999995 5666655556666654444789
Q ss_pred CHHHHHHHHHHHHHH
Q 046808 134 TDKDLKRIKKEMDRI 148 (653)
Q Consensus 134 t~~~l~~Ie~~m~~i 148 (653)
.++.++++.+.+.++
T Consensus 171 ~~ewi~~a~e~~~el 185 (188)
T PF09886_consen 171 KDEWIEEAKEMIEEL 185 (188)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999998888777665
No 181
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=21.07 E-value=3.1e+02 Score=24.34 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=29.7
Q ss_pred CceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeCCCCHHHHHHHHHH---cCCCEEEEECcc
Q 046808 555 PIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICHGERLPKLIRNAEK---QKIPLMAVVGAK 614 (653)
Q Consensus 555 p~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~~~~~~kk~~~A~~---~gip~~iiiG~~ 614 (653)
..++.|....+........+ ....++.+....+.++|+++.+|-+ .|..-+++||.+
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD 69 (122)
T PF09837_consen 10 GADVVLAYTPDGDHAAFRQL---WLPSGFSFFPQQGGDLGERMANAFQQAARGYEPVVLIGSD 69 (122)
T ss_dssp SSEEEEEE----TTHHHHHH---HH-TTSEEEE--SSSHHHHHHHHHHHHHTT-SEEEEE-SS
T ss_pred CcCEEEEEcCCccHHHHhcc---ccCCCCEEeecCCCCHHHHHHHHHHHHHcCCCcEEEEcCC
Confidence 34565654443332222222 4556777776667888888877764 468888888864
No 182
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=21.06 E-value=4.8e+02 Score=22.94 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=25.4
Q ss_pred EEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHH
Q 046808 607 LMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 644 (653)
Q Consensus 607 ~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~ 644 (653)
++|+.|-+ .++.+.|.|-.++....++.++|.+.-.
T Consensus 96 ~vVv~g~~--~~~~~~i~DP~~~~~~~~~~~~f~~~w~ 131 (141)
T cd02549 96 AMVVIGYD--RKGNVYVNDPGGGRRLVVSFDEFEKAWK 131 (141)
T ss_pred EEEEEEEc--CCCCEEEECCCCCcCEEEeHHHHHHHHH
Confidence 44444533 2667889998888778999999876544
No 183
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=20.82 E-value=5.5e+02 Score=24.01 Aligned_cols=78 Identities=13% Similarity=0.233 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCCceEEEEecCh---h------hHHHHHHHHHHHHhCCCeEEEeC-C-----CCHHHHHHH
Q 046808 535 ERFFGVLIEHYAGDFPLWLSPIQARVLPVTD---T------QLEYCNEVIKKLKTNGIRAEICH-G-----ERLPKLIRN 599 (653)
Q Consensus 535 eRli~~L~e~~~~~~P~~lap~~v~Vi~~~~---~------~~~~a~~la~~Lr~~Gi~v~~d~-~-----~~~~kk~~~ 599 (653)
+..+..+++.|..+++.. .+..+..++-.. . ...++..+-..|....+.|.+|. + ..+..++..
T Consensus 13 ~~~~~~~i~~Y~kRl~~~-~~~e~~el~~~~~~~~~~~~~~~~~E~~~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~ 91 (157)
T PRK00103 13 PKWLKDGIAEYLKRFPRY-LKLELIEIPDEKRPKNADAEQIKAKEGERILAALPKGARVIALDERGKQLSSEEFAQELER 91 (157)
T ss_pred cHHHHHHHHHHHHhcCcc-CCceEEEecCCcCccccCHHHHHHHHHHHHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHH
Confidence 445666667776666643 455665554321 0 23455666666666677888887 4 347889999
Q ss_pred HHHcCC-CEEEEECc
Q 046808 600 AEKQKI-PLMAVVGA 613 (653)
Q Consensus 600 A~~~gi-p~~iiiG~ 613 (653)
+...|. .++.+||.
T Consensus 92 ~~~~g~~~i~F~IGG 106 (157)
T PRK00103 92 WRDDGRSDVAFVIGG 106 (157)
T ss_pred HHhcCCccEEEEEcC
Confidence 988887 78889985
No 184
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=20.63 E-value=61 Score=37.82 Aligned_cols=32 Identities=9% Similarity=-0.008 Sum_probs=28.7
Q ss_pred CCCCcccccCcccccccccCCCCeEEEeecCC
Q 046808 55 PAETPSVTQNGKVEQAQMTSETEKVVLPTNES 86 (653)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~ 86 (653)
...++|.+||+++.++++++.|+.||+++...
T Consensus 420 ~~c~gAkVnG~ivpl~~~Lk~Gd~VEIit~k~ 451 (701)
T COG0317 420 HRCIGAKVNGRIVPLTTKLQTGDQVEIITSKH 451 (701)
T ss_pred ceeeEEEECCEEeccceecCCCCEEEEEeCCC
Confidence 45678999999999999999999999999764
Done!