Query 046808
Match_columns 653
No_of_seqs 376 out of 3075
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 07:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qf6_A THRRS, threonyl-tRNA sy 100.0 4E-118 1E-122 1015.9 57.8 599 48-651 26-636 (642)
2 1nyr_A Threonyl-tRNA synthetas 100.0 1E-115 4E-120 1001.0 51.9 598 49-651 29-643 (645)
3 3uh0_A Threonyl-tRNA synthetas 100.0 1.3E-79 4.6E-84 671.9 35.7 398 253-651 32-460 (460)
4 1evl_A Threonyl-tRNA synthetas 100.0 1.8E-73 6.2E-78 618.5 38.8 394 256-651 1-395 (401)
5 3a32_A Probable threonyl-tRNA 100.0 6.2E-65 2.1E-69 561.1 30.7 397 246-649 12-448 (471)
6 3ial_A Prolyl-tRNA synthetase; 100.0 2.7E-61 9.2E-66 528.6 28.3 345 257-639 27-398 (518)
7 4hvc_A Bifunctional glutamate/ 100.0 7.1E-60 2.4E-64 518.9 34.7 354 257-649 34-414 (519)
8 1hc7_A Prolyl-tRNA synthetase; 100.0 1.4E-59 4.8E-64 516.5 31.8 354 255-649 15-387 (477)
9 2j3l_A Prolyl-tRNA synthetase; 100.0 8E-59 2.7E-63 525.8 36.7 393 249-651 14-568 (572)
10 1nj1_A PROR, proline-tRNA synt 100.0 2.2E-59 7.6E-64 517.8 29.5 354 256-649 42-414 (501)
11 1nj8_A Proline-tRNA synthetase 100.0 7E-59 2.4E-63 509.5 30.3 355 255-649 8-381 (459)
12 2i4l_A Proline-tRNA ligase; al 100.0 7.1E-59 2.4E-63 511.0 23.6 381 249-643 34-457 (458)
13 4e51_A Histidine--tRNA ligase; 100.0 3.6E-56 1.2E-60 489.5 32.1 354 273-647 33-458 (467)
14 1qe0_A Histidyl-tRNA synthetas 100.0 7.2E-55 2.5E-59 476.2 27.0 351 274-644 4-419 (420)
15 1ati_A Glycyl-tRNA synthetase; 100.0 7.5E-54 2.6E-58 474.1 27.8 377 257-648 7-504 (505)
16 2zt5_A Glycyl-tRNA synthetase; 100.0 5.8E-53 2E-57 480.0 25.3 391 257-651 69-660 (693)
17 1h4v_B Histidyl-tRNA synthetas 100.0 3.3E-51 1.1E-55 447.3 34.2 354 273-647 4-420 (421)
18 1htt_A Histidyl-tRNA synthetas 100.0 3.6E-51 1.2E-55 447.3 32.1 354 273-647 5-422 (423)
19 4g85_A Histidine-tRNA ligase, 100.0 4.6E-51 1.6E-55 456.4 30.0 400 228-649 20-515 (517)
20 1wu7_A Histidyl-tRNA synthetas 100.0 3E-51 1E-55 448.9 25.7 348 273-648 7-426 (434)
21 3net_A Histidyl-tRNA synthetas 100.0 4.1E-50 1.4E-54 441.9 28.9 348 273-647 13-464 (465)
22 1g5h_A Mitochondrial DNA polym 100.0 2.1E-51 7.3E-56 447.4 17.9 375 231-650 8-440 (454)
23 4g84_A Histidine--tRNA ligase, 100.0 4.3E-49 1.5E-53 436.1 34.0 369 257-649 3-462 (464)
24 3ikl_A DNA polymerase subunit 100.0 2.3E-50 7.8E-55 432.7 22.9 325 276-651 93-451 (459)
25 3lc0_A Histidyl-tRNA synthetas 100.0 3.5E-49 1.2E-53 431.5 29.9 343 273-639 30-446 (456)
26 2dq3_A Seryl-tRNA synthetase; 100.0 6.8E-44 2.3E-48 385.2 11.8 287 225-562 120-423 (425)
27 2dq0_A Seryl-tRNA synthetase; 100.0 2.9E-42 1E-46 374.3 17.9 266 253-557 157-438 (455)
28 3vbb_A Seryl-tRNA synthetase, 100.0 1.8E-42 6.2E-47 375.7 15.0 289 226-565 152-472 (522)
29 1wle_A Seryl-tRNA synthetase; 100.0 6.4E-42 2.2E-46 373.3 17.3 290 223-561 165-473 (501)
30 1ses_A Seryl-tRNA synthetase; 100.0 6.2E-42 2.1E-46 369.1 16.1 283 222-557 112-412 (421)
31 3lss_A Seryl-tRNA synthetase; 100.0 2.6E-41 9.1E-46 364.8 16.8 276 253-565 171-471 (484)
32 1tke_A Threonyl-tRNA synthetas 100.0 2.5E-40 8.5E-45 329.3 18.0 185 51-238 29-224 (224)
33 3err_A Fusion protein of micro 100.0 1.9E-40 6.4E-45 365.6 17.5 281 223-556 222-520 (536)
34 3qne_A Seryl-tRNA synthetase, 100.0 2.9E-40 9.8E-45 356.2 14.3 275 252-564 148-445 (485)
35 3od1_A ATP phosphoribosyltrans 100.0 3.5E-38 1.2E-42 339.0 27.7 311 273-616 11-394 (400)
36 2cja_A Seryl-tRNA synthetase; 100.0 6.3E-36 2.2E-40 327.2 10.6 264 258-556 205-511 (522)
37 1z7m_A ATP phosphoribosyltrans 100.0 2E-32 6.9E-37 289.0 20.9 159 273-440 23-183 (344)
38 3rac_A Histidine-tRNA ligase; 100.0 1.7E-31 5.8E-36 284.5 23.4 161 273-440 24-190 (373)
39 3mf2_A BLL0957 protein; aminoa 100.0 8.5E-31 2.9E-35 268.5 10.7 240 275-552 53-325 (346)
40 1v4p_A Alanyl-tRNA synthetase; 99.9 6.6E-26 2.3E-30 212.8 14.1 139 88-234 2-148 (157)
41 3kew_A DHHA1 domain protein; s 99.9 1.3E-25 4.3E-30 224.2 10.1 154 70-237 73-228 (241)
42 2ztg_A Alanyl-tRNA synthetase; 99.9 9.6E-23 3.3E-27 229.2 16.6 153 74-236 579-736 (739)
43 2zze_A Alanyl-tRNA synthetase; 99.9 1.3E-22 4.4E-27 228.1 17.1 155 70-236 588-750 (752)
44 2e1b_A PH0108, 216AA long hypo 99.9 9.4E-23 3.2E-27 200.4 14.0 135 71-235 75-214 (216)
45 1usy_A ATP phosphoribosyltrans 99.9 8.2E-23 2.8E-27 209.1 11.6 127 291-441 5-134 (275)
46 3dsq_A Pyrrolysyl-tRNA synthet 99.7 1E-17 3.5E-22 171.7 13.8 142 285-435 69-210 (288)
47 1v95_A Nuclear receptor coacti 99.7 5.6E-16 1.9E-20 137.1 11.4 98 553-650 6-108 (130)
48 3qtc_A Pyrrolysyl-tRNA synthet 99.4 9E-13 3.1E-17 135.7 15.0 133 288-434 78-212 (290)
49 1nnh_A Asparaginyl-tRNA synthe 99.2 1.3E-10 4.5E-15 119.4 13.1 128 282-427 11-140 (294)
50 1wyd_A Hypothetical aspartyl-t 98.8 1.3E-08 4.5E-13 109.6 12.9 102 284-406 132-234 (429)
51 1x54_A Asparaginyl-tRNA synthe 98.8 1.5E-08 5.2E-13 109.3 12.7 102 284-406 133-235 (434)
52 1n9w_A Aspartyl-tRNA synthetas 98.7 1.7E-08 5.9E-13 108.5 9.6 101 284-405 123-224 (422)
53 1eov_A ASPRS, aspartyl-tRNA sy 98.7 6.3E-08 2.2E-12 106.0 14.1 116 284-419 176-294 (487)
54 3a74_A Lysyl-tRNA synthetase; 98.7 8.2E-08 2.8E-12 105.0 13.4 116 284-418 172-289 (493)
55 1e1o_A Lysyl-tRNA synthetase, 98.6 3.6E-07 1.2E-11 100.2 13.3 115 285-418 182-298 (504)
56 3a5y_A GENX, putative lysyl-tR 98.4 9.1E-07 3.1E-11 92.5 11.7 121 281-419 27-157 (345)
57 3l4g_A Phenylalanyl-tRNA synth 98.3 9.1E-06 3.1E-10 88.3 15.2 145 283-435 221-406 (508)
58 2xgt_A Asparaginyl-tRNA synthe 98.2 6.5E-06 2.2E-10 88.9 12.2 115 284-419 130-246 (435)
59 2du3_A O-phosphoseryl-tRNA syn 98.2 1.4E-05 4.7E-10 87.2 14.4 85 342-435 180-265 (534)
60 3nem_A Aspartyl-tRNA synthetas 98.2 7.8E-06 2.7E-10 88.1 12.0 116 285-420 136-254 (438)
61 3bju_A Lysyl-tRNA synthetase; 98.0 4.3E-05 1.5E-09 84.1 14.2 116 285-419 175-292 (521)
62 4ex5_A Lysine--tRNA ligase; st 98.0 2.8E-05 9.6E-10 85.2 12.2 115 285-418 203-319 (529)
63 1c0a_A Aspartyl tRNA synthetas 98.0 4.5E-05 1.5E-09 85.2 13.4 116 285-420 137-255 (585)
64 1l0w_A Aspartyl-tRNA synthetas 98.0 4.7E-05 1.6E-09 84.8 13.4 116 285-420 143-261 (580)
65 4ah6_A Aspartate--tRNA ligase, 97.9 6.7E-05 2.3E-09 83.5 13.5 107 285-411 147-256 (617)
66 1b7y_A Phers, protein (phenyla 97.9 0.00012 4E-09 76.4 13.9 132 285-429 99-247 (350)
67 2rhq_A Phenylalanyl-tRNA synth 97.9 0.00017 5.9E-09 73.7 14.7 131 285-430 51-187 (294)
68 3m4p_A Ehasnrs, asparaginyl-tR 97.8 6.5E-05 2.2E-09 81.3 11.4 115 284-419 154-270 (456)
69 3i7f_A Aspartyl-tRNA synthetas 97.8 0.00011 3.6E-09 80.9 12.0 116 285-420 243-361 (548)
70 1wwt_A Threonyl-tRNA synthetas 97.7 1.9E-06 6.6E-11 71.6 -3.3 50 49-98 38-87 (88)
71 2du7_A O-phosphoseryl-tRNA syn 97.6 0.00027 9.1E-09 77.1 12.2 81 341-430 191-272 (549)
72 3ig2_A Phenylalanyl-tRNA synth 97.3 0.0032 1.1E-07 61.1 14.4 141 289-435 6-161 (213)
73 2odr_B Phosphoseryl-tRNA synth 97.3 0.0018 6.3E-08 71.2 13.4 85 342-435 199-284 (648)
74 2odr_A Phosphoseryl-tRNA synth 97.3 0.0019 6.5E-08 71.1 13.4 85 342-435 199-284 (665)
75 2odr_D Phosphoseryl-tRNA synth 97.3 0.002 6.8E-08 71.1 13.4 85 342-435 199-284 (685)
76 3ica_A Phenylalanyl-tRNA synth 97.3 0.0045 1.5E-07 60.1 14.7 141 289-435 6-161 (213)
77 2odr_C Phosphoseryl-tRNA synth 97.3 0.0021 7.3E-08 71.0 13.5 85 342-435 199-284 (701)
78 3l4g_B Phenylalanyl-tRNA synth 97.0 0.0089 3E-07 67.0 15.7 134 286-430 390-525 (589)
79 3pco_A Phenylalanyl-tRNA synth 96.8 0.0029 1E-07 65.1 8.5 126 284-427 104-234 (327)
80 2rhq_B Phenylalanyl-tRNA synth 96.4 0.019 6.6E-07 66.4 12.9 136 284-430 490-635 (795)
81 1b7y_B Phers, protein (phenyla 95.4 0.054 1.8E-06 62.5 11.0 127 285-429 487-622 (785)
82 3cmq_A Phenylalanyl-tRNA synth 94.1 0.67 2.3E-05 49.2 14.5 101 288-403 49-163 (415)
83 2kmm_A Guanosine-3',5'-BIS(dip 91.4 0.035 1.2E-06 43.6 -0.1 35 54-88 33-67 (73)
84 3pco_B Phenylalanyl-tRNA synth 90.5 0.93 3.2E-05 52.3 10.6 129 291-429 493-630 (795)
85 3hvz_A Uncharacterized protein 86.5 0.13 4.3E-06 41.1 -0.1 39 50-88 34-72 (78)
86 1m5w_A Pyridoxal phosphate bio 65.4 29 0.001 33.4 9.4 67 534-610 76-154 (243)
87 3gk0_A PNP synthase, pyridoxin 63.7 26 0.00088 34.4 8.7 65 534-608 104-180 (278)
88 3o6c_A PNP synthase, pyridoxin 61.5 19 0.00065 35.0 7.3 65 534-608 75-149 (260)
89 1j98_A Autoinducer-2 productio 61.2 20 0.00068 32.1 6.8 63 88-150 47-114 (157)
90 1vje_A Autoinducer-2 productio 60.9 27 0.00091 31.5 7.7 76 75-151 32-113 (166)
91 1j6x_A Autoinducer-2 productio 60.4 25 0.00087 31.5 7.4 75 75-150 30-110 (160)
92 1j6w_A Autoinducer-2 productio 55.1 32 0.0011 31.3 7.3 76 75-150 29-113 (175)
93 2jmk_A Hypothetical protein TA 41.4 1.2E+02 0.004 24.4 7.6 24 566-589 88-111 (111)
94 1ghh_A DINI, DNA-damage-induci 36.5 1.6E+02 0.0053 23.3 7.8 67 78-148 2-70 (81)
95 4grd_A N5-CAIR mutase, phospho 36.1 1.6E+02 0.0054 26.8 8.7 54 557-610 14-73 (173)
96 3lp6_A Phosphoribosylaminoimid 34.8 1.6E+02 0.0056 26.7 8.6 56 557-612 9-70 (174)
97 3kuu_A Phosphoribosylaminoimid 33.7 1.7E+02 0.006 26.5 8.6 56 557-612 14-75 (174)
98 3rf1_A Glycyl-tRNA synthetase 33.1 1E+02 0.0035 30.1 7.2 60 362-430 65-126 (311)
99 3h16_A TIR protein; bacteria T 32.3 28 0.00096 31.0 3.2 60 554-613 19-83 (154)
100 1xg8_A Hypothetical protein SA 32.2 61 0.0021 26.8 4.7 42 100-152 34-77 (111)
101 1j5w_A Glycyl-tRNA synthetase 31.3 1.1E+02 0.0037 29.8 7.0 61 361-430 52-114 (298)
102 1xmp_A PURE, phosphoribosylami 30.6 2E+02 0.0069 26.0 8.4 55 557-611 13-73 (170)
103 3trh_A Phosphoribosylaminoimid 30.4 1.7E+02 0.0057 26.5 7.9 56 557-612 8-69 (169)
104 1u11_A PURE (N5-carboxyaminoim 27.9 2.4E+02 0.0081 25.8 8.5 55 557-611 23-83 (182)
105 3ors_A N5-carboxyaminoimidazol 27.8 2.5E+02 0.0087 25.2 8.6 55 557-611 5-65 (163)
106 3oow_A Phosphoribosylaminoimid 27.4 3E+02 0.01 24.8 9.0 56 557-612 7-68 (166)
107 3pzy_A MOG; ssgcid, seattle st 27.2 68 0.0023 28.9 4.9 63 553-616 5-78 (164)
108 1o4v_A Phosphoribosylaminoimid 26.4 2.8E+02 0.0096 25.4 8.7 55 557-611 15-75 (183)
109 2ztg_A Alanyl-tRNA synthetase; 25.2 1.5E+02 0.0051 33.5 8.1 114 289-431 62-181 (739)
110 3jrn_A AT1G72930 protein; TIR 23.4 92 0.0031 28.5 5.0 60 555-614 8-73 (176)
111 1vjk_A Molybdopterin convertin 22.0 43 0.0015 27.2 2.2 27 57-83 67-93 (98)
112 3rg8_A Phosphoribosylaminoimid 21.6 3.9E+02 0.013 23.8 8.6 56 557-612 4-66 (159)
113 1ryj_A Unknown; beta/alpha pro 21.3 54 0.0018 24.8 2.5 29 56-84 38-66 (70)
114 4gqc_A Thiol peroxidase, perox 21.0 1.5E+02 0.0053 26.0 6.1 40 606-649 122-161 (164)
115 3rfq_A Pterin-4-alpha-carbinol 20.8 1.6E+02 0.0055 27.0 6.2 67 552-618 27-103 (185)
116 3qay_A Endolysin; amidase A/B 20.5 2.5E+02 0.0087 25.4 7.5 49 566-614 30-87 (180)
117 3hcz_A Possible thiol-disulfid 20.5 2.6E+02 0.0089 23.1 7.3 81 556-649 65-147 (148)
118 2q5w_D Molybdopterin convertin 20.3 42 0.0015 25.6 1.8 25 59-83 48-72 (77)
No 1
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=3.7e-118 Score=1015.93 Aligned_cols=599 Identities=41% Similarity=0.781 Sum_probs=575.2
Q ss_pred ccccccCCCCCcccccCcccccccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCeeEEE
Q 046808 48 ATSVATEPAETPSVTQNGKVEQAQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIENGFYYD 127 (653)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~~g~~~d 127 (653)
.+|..+|.+++++.+||++||+++|++.||+|++++..+.+|+.++|||++|||++|++++||++++++|+++++|||||
T Consensus 26 ~i~~~~~~~~~~~~vng~~~dl~~~l~~d~~~~~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~~gfy~D 105 (642)
T 1qf6_A 26 DIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYD 105 (642)
T ss_dssp HHCHHHHHHCSEEEETTEEEETTSCBCSCEECCEECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEETTEEEEE
T ss_pred HhchhhhhheEEEEECCEEeccccccCCCceEEEeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccCCeeEEE
Confidence 35556777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCChhhHHHh-hhcCC-CCEEEEEECCceeeeecc
Q 046808 128 FDM-EPLTDKDLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEIL-ESIIE-DPITIYHIGEEWWDLCAG 204 (653)
Q Consensus 128 ~~~-~~lt~~~l~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll-~~~~~-~~v~i~~ig~~~~d~c~G 204 (653)
|+. .++|++|+++||++||++|++|+||++.+++++||+++|+..+++||++|+ +..++ +.|++|+|| +|.|+|+|
T Consensus 106 f~~~~~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g-~~~dlC~G 184 (642)
T 1qf6_A 106 VDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHE-EYVDMCRG 184 (642)
T ss_dssp EECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEET-TEEECCSS
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEEC-CEEEecCC
Confidence 997 789999999999999999999999999999999999999999999999999 77775 589999999 89999999
Q ss_pred ccccccccccccceEEe--------ecCCccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCcccccccccC
Q 046808 205 PHVETTGKINKKAVELE--------GDEKKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDEAGG 276 (653)
Q Consensus 205 ~hv~~Tg~i~~~~f~l~--------~~~k~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~~~~~~ 276 (653)
|||+|||+| +.|+|. |++++.+++|+||++|++++++++|++..++++++||++||++|++|+|+ ..++
T Consensus 185 pHv~~Tg~I--~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~~~~~~l~~~~~~~eea~~rdH~~lg~~l~l~~~~-~~~~ 261 (642)
T 1qf6_A 185 PHVPNMRFC--HHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQ-EEAP 261 (642)
T ss_dssp CCCSBGGGC--CSEEEEEEEEEEGGGCTTSCEEEEEEEEECSSHHHHHHHHHHHHHHHTTCHHHHHHHTTCEECC-TTST
T ss_pred CccCCCCcc--eeEEEeeeccccccCccCCceeEeeeccccCchhHHhhhhhhhhccccCCHHHHHHhcCccccc-cCCC
Confidence 999999999 999998 67788999999999999999999999999999999999999999999995 5799
Q ss_pred cceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHH
Q 046808 277 GLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILV 356 (653)
Q Consensus 277 G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~ 356 (653)
|+++|+|.|+.++++|+++|++.+.++||++|.||+|++.++|++||||+.|.++||. .|+++++++||||+|++++++
T Consensus 262 G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~-~d~~~~~~~LrP~~~~~~~~~ 340 (642)
T 1qf6_A 262 GMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQI 340 (642)
T ss_dssp TCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE-EEETTEEEEECSSSHHHHHHH
T ss_pred CcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee-eecCCceEEecCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred HHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEe
Q 046808 357 YQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNL 436 (653)
Q Consensus 357 ~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l 436 (653)
|+++++||++||+|+||+|+|||+|.+++++||+|+|||+|.|+|+||+++++.+++.+++.++.++|+.|||+++.+.+
T Consensus 341 ~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~~i~~~~~i~~~lGl~~~~v~l 420 (642)
T 1qf6_A 341 FNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKL 420 (642)
T ss_dssp HTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGGTCCCCEEEE
T ss_pred HHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEE
Confidence 99999999999999999999999999955699999999999999999999998888889999999999999997799999
Q ss_pred cCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccccceEEEecCCcccccEEECC
Q 046808 437 STKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDS 516 (653)
Q Consensus 437 ~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~ 516 (653)
++++.++.|+++.|+.+...++++|+..|++|.+++++++||||++|+.+.|++|+.|+|+|+++||++++|||++|.+.
T Consensus 421 ~~~~e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~~~~~gti~~df~l~~r~~~~y~~~ 500 (642)
T 1qf6_A 421 STRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGE 500 (642)
T ss_dssp ECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCEEEEEEEEEESSHHHHTTCCEECT
T ss_pred ecCcccccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCceEEeeeEEEeccCCccCCCEEEec
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCEEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHH
Q 046808 517 NSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPK 595 (653)
Q Consensus 517 ~g~~~~p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~k 595 (653)
+|+++.|+|+|+|++||++|++++|+|++++.||.|++|+||+|+|++++..++|.+|+++||++|++|++|+ ++++|+
T Consensus 501 ~g~~~~P~~~hrai~G~ieR~i~~liE~~~~~~P~~laP~qv~vipi~~~~~~~a~~v~~~L~~~Gi~v~~D~~~~~~g~ 580 (642)
T 1qf6_A 501 DNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGF 580 (642)
T ss_dssp TSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHTTTCCEEEECCSSCHHH
T ss_pred CCCCcCcEEEEeccCCCHHHHHHHHHHHhcCCCCcccCCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHH
Confidence 9988999999988889999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHhhhc
Q 046808 596 LIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 651 (653)
Q Consensus 596 k~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~~~ 651 (653)
|+++|++.|+||+||||++|+++|+|+||+|++++|..++++++++.|++.++++.
T Consensus 581 kir~a~~~g~p~~ivvG~~E~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~~~~ 636 (642)
T 1qf6_A 581 KIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRS 636 (642)
T ss_dssp HHHHHHHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEEECchhhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999888763
No 2
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=1.1e-115 Score=1001.04 Aligned_cols=598 Identities=41% Similarity=0.746 Sum_probs=572.7
Q ss_pred cccccCCCCCcccccCcccccccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCeeEEEe
Q 046808 49 TSVATEPAETPSVTQNGKVEQAQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIENGFYYDF 128 (653)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~~g~~~d~ 128 (653)
++...|.+++++.+||++||+++|++.||+|++++.++.+|.++++||++|||++|++++||++.+++|+++++||||||
T Consensus 29 ~~~~~~~~~v~~~vng~~~dl~~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~~~g~~~Df 108 (645)
T 1nyr_A 29 ISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDF 108 (645)
T ss_dssp TCHHHHHHCCEEEETTEEECTTSCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEETTEEEEEE
T ss_pred hhhhcccCeEEEEECCEEEeCCcccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCccCCceEEEe
Confidence 44456677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCChhhHHHhhhcCCC-CEEEEEECCceeeeecccc
Q 046808 129 DM-EPLTDKDLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILESIIED-PITIYHIGEEWWDLCAGPH 206 (653)
Q Consensus 129 ~~-~~lt~~~l~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~~~~~~-~v~i~~ig~~~~d~c~G~h 206 (653)
+. .++|++|+++||++||++|++|+||++..++++||+++|.. ++||.+|++..+.+ .|+||+|| +|+|+|+|||
T Consensus 109 ~~~~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~--~~yk~~li~~~~~~~~vrv~~~g-~~~dlC~G~H 185 (645)
T 1nyr_A 109 DIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSN--DEYKLELIDAIPEDENVTLYSQG-DFTDLCRGVH 185 (645)
T ss_dssp ECSSCCCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSS--CHHHHHHHCCCSSSCCCEEEEET-TEEEECCSCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhh--CcchHHHhhcCCCCCeeEEEEEC-CEEEecCCcc
Confidence 96 78999999999999999999999999999999999999875 89999999988764 89999999 8999999999
Q ss_pred ccccccccccceEEe--------ecCCccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCcccccccccCcc
Q 046808 207 VETTGKINKKAVELE--------GDEKKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDEAGGGL 278 (653)
Q Consensus 207 v~~Tg~i~~~~f~l~--------~~~k~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~~~~~~G~ 278 (653)
|+|||+| +.|+|. +++++.+++|++|++|+++++|.++.+..++++++||++||++++||+|.+.+++|+
T Consensus 186 v~~Tg~i--~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~~~~l~~~~~~l~ea~~rdhr~lg~~l~l~~~~~~~~~G~ 263 (645)
T 1nyr_A 186 VPSTAKI--KEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKERDHRKIGKELELFTNSQLVGAGL 263 (645)
T ss_dssp CSCGGGC--CEEEEEEEEEEETTSCSSSCEEEEEEEEEESSHHHHHHHHHHHHHHHHTCHHHHHHHTTCEEEETTTEEEE
T ss_pred cCCCCCC--ceEEEeeeCchHHHHHhHHHHHHHHHHHhcCCHHHhhhhhhhhhhhhhhhHHHHhhhcceEEecccCCCce
Confidence 9999999 999999 567889999999999999999999999999999999999999999999976669999
Q ss_pred eecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCC-ceEEeccCChHHHHHHH
Q 046808 279 VFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIED-ELYQLRPMNCPYHILVY 357 (653)
Q Consensus 279 ~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~-~~l~LrP~~~~~~~~~~ 357 (653)
++|+|.|++++++|+++|++++.++||++|.||+|++.++|++||||+.|.++||++.|.++ ++++||||+|++++++|
T Consensus 264 ~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~~~~~~~~ 343 (645)
T 1nyr_A 264 PLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIY 343 (645)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHH
T ss_pred eEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecCCCeEEEeCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEec
Q 046808 358 QRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLS 437 (653)
Q Consensus 358 ~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~ 437 (653)
+++.+||++||+|+||+|+|||+|.+|+++||+|+|||+|+|+|+||++++..|++++++.++.++|+.|||+++.+.++
T Consensus 344 ~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~lGl~~~~~~l~ 423 (645)
T 1nyr_A 344 ANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLS 423 (645)
T ss_dssp HTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred HhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99999999999999999999999999778999999999999999999999999999999999999999999988999999
Q ss_pred CCc----ccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccccceEEEecCCcccccEE
Q 046808 438 TKP----EKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVY 513 (653)
Q Consensus 438 ~~~----~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~ 513 (653)
+++ .+++|.++.|+++...+++.|+..|+++..+++.++||||++++.+.|++|+.|+|+++++||++++|||+.|
T Consensus 424 ~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ygpki~~~~~d~lg~~~~~gtiq~D~~l~~~~d~~Y 503 (645)
T 1nyr_A 424 YRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTY 503 (645)
T ss_dssp ECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEECCTTSCCEEEEEEEEESSHHHHTTCCE
T ss_pred CCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecCCCCceeCCccceehhhhhCchhhcceEEeecccccccceEE
Confidence 987 5678888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCcccCEEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecC-hhhHHHHHHHHHHHHhCCCeEEEeC-CC
Q 046808 514 VDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVT-DTQLEYCNEVIKKLKTNGIRAEICH-GE 591 (653)
Q Consensus 514 ~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~-~~~~~~a~~la~~Lr~~Gi~v~~d~-~~ 591 (653)
.+.+|+.+.|+|+|.|++||+||++++|+|++++.||.|++|+||+|+|++ ++..++|.+|+++||++|++|++|+ ++
T Consensus 504 ~~~~g~~~~P~~ih~~~~GgieR~i~~liE~~~~~~P~~lap~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~ 583 (645)
T 1nyr_A 504 IGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNE 583 (645)
T ss_dssp ECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSSC
T ss_pred ECCCCCccCcEEEEeccCCcHHHHHHHHHHHhcCCCCCCCCCceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999998899999999888899999999999999999999999999999999 8999999999999999999999999 89
Q ss_pred CHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHhhhc
Q 046808 592 RLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 651 (653)
Q Consensus 592 ~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~~~ 651 (653)
++|+|+++|++.|+|++||||++|+++|+|+||+|++++|..++++++++.|++.++++.
T Consensus 584 ~~g~k~~~a~~~g~p~~iivG~~e~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~~~~ 643 (645)
T 1nyr_A 584 KMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKK 643 (645)
T ss_dssp CHHHHHHHHHHHTCSEEEEECHHHHHTTEEEEEETTSSCCCEEEHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHhcCCCEEEEEccchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999888764
No 3
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=1.3e-79 Score=671.87 Aligned_cols=398 Identities=34% Similarity=0.666 Sum_probs=379.8
Q ss_pred hhhchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHH-HhcCCeEEecCccCchhhhhhcCcccccccc
Q 046808 253 AKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSH-IEHDYDLLYTPHVAKADLWKISGHLDFYREN 331 (653)
Q Consensus 253 akk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~-~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~ 331 (653)
.+.+||++||++||||+|+ ..++|+++|+|.|+.++++|++++++.+ .++||++|.||+|++.++|+++||++.|.++
T Consensus 32 ~~~rdH~~lg~~l~l~~~~-~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~e 110 (460)
T 3uh0_A 32 TPATMTSMVSQRQDLFMTD-PLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADD 110 (460)
T ss_dssp CHHHHHHHHHHHHTCEECC-TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGG
T ss_pred CCCCCHHHHHHhCCCceec-cCCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccc
Confidence 4578999999999999994 5699999999999999999999999999 9999999999999999999999999999999
Q ss_pred cceeccc--CCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhH
Q 046808 332 MYDQMNI--EDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQI 409 (653)
Q Consensus 332 ~y~~~d~--~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~ 409 (653)
||.+.|. +++.++||||+|++++.+|+++++||++||+|++|+|+|||+|.+++++||+|+|||+|.|+|+||+++++
T Consensus 111 my~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~ 190 (460)
T 3uh0_A 111 MFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQV 190 (460)
T ss_dssp SCEECC------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGH
T ss_pred eEEEecCCCCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHH
Confidence 9999886 57899999999999999999999999999999999999999999975699999999999999999999998
Q ss_pred HHHHHHHHHHHHHHH-HHcCCC--------eEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccc
Q 046808 410 KDEIRAVLDLTEEIL-LQFGFN--------KYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGP 480 (653)
Q Consensus 410 ~d~~~e~l~~~~~il-~~lGl~--------~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~ 480 (653)
.+++.++++++.++| +.|||+ .+.+.++++|.+++|+++.|++++..|+++|+..|.+|.++++.++||||
T Consensus 191 ~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~~l~t~pe~~~G~~~~w~~ae~~L~~~l~~~g~~~~~~~g~gafygp 270 (460)
T 3uh0_A 191 KSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGP 270 (460)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCC-----CCSSCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHHTCCEEEETTCSCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcccccccceEEEEccCCcccCCCHHHHHHHHHHHHHHHHHhCCCeeECCCccccccc
Confidence 888889999999999 999998 79999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEE
Q 046808 481 KIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARV 560 (653)
Q Consensus 481 ~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~V 560 (653)
++|+.+.|+.|+.|+|+|+|+||+++.|||+.|.+++|+...|+|+|.+++||+||++++|+|++++.||+|++|+||+|
T Consensus 271 kid~~~~d~~gr~~q~~Tiqld~~~~~rf~l~y~~~~g~~~~P~~ih~~~~Gg~eRli~~Lie~~~g~~P~~laP~qv~V 350 (460)
T 3uh0_A 271 KLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSNEGRWPFWLNPYQAVI 350 (460)
T ss_dssp EEEEEEECTTSCEEEEEEEEEESHHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCGGGCSCCEEE
T ss_pred eEEEEEEccCCCeeeecccccccccccccceEEECCCCCccCcEEEecCcchHHHHHHHHHHHHcCCCCCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EecChh---hHHHHHHHHHHHHhC--------------CCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEE
Q 046808 561 LPVTDT---QLEYCNEVIKKLKTN--------------GIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVT 622 (653)
Q Consensus 561 i~~~~~---~~~~a~~la~~Lr~~--------------Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~ 622 (653)
+|++++ ..++|.+|+++||++ |++|++|+ +.++|+|+++|++.|+||+||||++|+++|+|+
T Consensus 351 ipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~~~lg~k~r~Ad~~g~p~~ivvG~~E~~~g~Vt 430 (460)
T 3uh0_A 351 IPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYN 430 (460)
T ss_dssp EESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCSSCHHHHHHHHHHHTCSEEEEECHHHHHHTCEE
T ss_pred EEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhCCeEE
Confidence 999977 889999999999998 99999999 899999999999999999999999999999999
Q ss_pred EEECCCCc-eeeeeHHHHHHHHHHHHhhhc
Q 046808 623 VRSRFGGE-LGTMKVDDFISRIKSATENRT 651 (653)
Q Consensus 623 vk~~~~~~-q~~v~~~el~~~i~~~~~~~~ 651 (653)
||+|++++ |..++++++++.|++++++++
T Consensus 431 vr~r~~~e~q~~v~~~el~~~l~~~~~~~~ 460 (460)
T 3uh0_A 431 IRERDNRKSFEKLTMSQIWEKFIELEKNYK 460 (460)
T ss_dssp EEEGGGTTSCEEECHHHHHHHHHHHHHTTC
T ss_pred EEECCCCceeEEeeHHHHHHHHHHHHHhcC
Confidence 99999999 999999999999999998763
No 4
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=1.8e-73 Score=618.53 Aligned_cols=394 Identities=44% Similarity=0.858 Sum_probs=374.5
Q ss_pred chhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccccccccee
Q 046808 256 RDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQ 335 (653)
Q Consensus 256 ~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~ 335 (653)
+||++||+++|||++ +..++|++||+|.|+.++++|++++++.+.++||++|.||+|++.++|+++||++.|.++||+
T Consensus 1 ~dh~~l~~~~~l~~~-~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~- 78 (401)
T 1evl_A 1 RDHRKIGKQLDLYHM-QEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT- 78 (401)
T ss_dssp CCHHHHHHHTTCEEC-CTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCE-
T ss_pred CChHHHHHhCCceEe-cCCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEe-
Confidence 589999999999988 557999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHH
Q 046808 336 MNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRA 415 (653)
Q Consensus 336 ~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e 415 (653)
.|+++++++||||+|+++++++++++.+|++||+|+||+|+|||+|.+++++||+|+|||+|.|+|+||+++++..++.+
T Consensus 79 ~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e 158 (401)
T 1evl_A 79 TSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNG 158 (401)
T ss_dssp EEETTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHH
T ss_pred EecCCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999833599999999999999999998888887889
Q ss_pred HHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCccc
Q 046808 416 VLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQ 495 (653)
Q Consensus 416 ~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~ 495 (653)
++.++.++|+.|||+++.+.+++++....|..+.|+.+...+++.|+..|++|.++++.++||||++|+.+.+++|..|+
T Consensus 159 ~i~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~G~~~~ 238 (401)
T 1evl_A 159 CIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQ 238 (401)
T ss_dssp HHHHHHHHHHTTTCSCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTTCCEEE
T ss_pred HHHHHHHHHHHcCCCceEEEEecCCcccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcCeEEEecCCCeEE
Confidence 99999999999999778999999887778888999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHH
Q 046808 496 CSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVI 575 (653)
Q Consensus 496 ~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la 575 (653)
|+|++.||++++++|++|.+.+|+...|+|||+|++||++|++++|+|++++.||+|++|+||+|+|++++..++|.+|+
T Consensus 239 ~gt~~~d~~l~~~~~~~y~~~~g~~~~p~~~~~~~~GgieRli~~l~e~~~~~~p~~~ap~~v~vi~~~~~~~~~a~~l~ 318 (401)
T 1evl_A 239 CGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELT 318 (401)
T ss_dssp EEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSGGGHHHHHHHH
T ss_pred eeeeeeccccccccCCEEECCCCCCcCcEEEEecCCCcHHHHHHHHHHHhCCcCCCCCCCeEEEEEecCHHHHHHHHHHH
Confidence 99997899988999999999889889999999888889999999999999899999999999999999999999999999
Q ss_pred HHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHhhhc
Q 046808 576 KKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 651 (653)
Q Consensus 576 ~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~~~ 651 (653)
+.||++|++|++|+ +.++++|+++|++.|+|++||||++|+++|+|+||+|++++|..++++++++.+++.++++.
T Consensus 319 ~~Lr~~Gi~v~~d~~~~~~~~k~~~A~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~q~~v~~~el~~~l~~~~~~~~ 395 (401)
T 1evl_A 319 QKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRS 395 (401)
T ss_dssp HHHHHTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTSCEEEEEEHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHhhhh
Confidence 99999999999999 89999999999999999999999999999999999999999999999999999999888663
No 5
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=6.2e-65 Score=561.07 Aligned_cols=397 Identities=35% Similarity=0.606 Sum_probs=359.2
Q ss_pred hhhhhHHhhhchhH--hhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcC
Q 046808 246 YLHFKEEAKRRDHR--RLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISG 323 (653)
Q Consensus 246 ~~e~~eeakk~~h~--~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg 323 (653)
+.+..+++++++|+ +||+++++| .++|++||+|.|+.++++|+++|++++.++||++|.||+|++.++|.++|
T Consensus 12 ~~~~~~~~~~~~h~~~~lg~~~~~~-----~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg 86 (471)
T 3a32_A 12 YAYELDITVKPDSRVPVFNREFATF-----TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSG 86 (471)
T ss_dssp HHHHTTSBCCTTSBCTTTCSBTHHH-----HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTC
T ss_pred HHHHcCccccCCchhHHHHHhcCCc-----cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhcc
Confidence 34566788899999 999999986 47999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceecccCCceEEeccCChHHHHHHHHhhhcccC---CCCcEEEEeeeeeecCCCCCCCCcceeceeEEcce
Q 046808 324 HLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYR---DFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDA 400 (653)
Q Consensus 324 ~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~---~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~ 400 (653)
|++.|.++||++ |++|+.++||||+|+++++++++++.+|+ +||+|+||+|+|||+|.++..+||+|+|||+|.|+
T Consensus 87 ~~~~~~~emy~~-d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~ 165 (471)
T 3a32_A 87 HIEFYRNNMYLF-DIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDA 165 (471)
T ss_dssp CCTTGGGGSEEE-EETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEE
T ss_pred CccccccceEEE-ecCCcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCe
Confidence 999999999999 99999999999999999999999988998 99999999999999999984499999999999999
Q ss_pred eeeeCchhHHHHHHHHHHHHHHHHHH-cCC----CeEEEEecCCc-----ccccCCchhHHHHHHHHHHHHH----hcCC
Q 046808 401 HIFCLEDQIKDEIRAVLDLTEEILLQ-FGF----NKYEVNLSTKP-----EKAVGGDDIWEKATSALRDALD----DKGW 466 (653)
Q Consensus 401 ~ifg~~~~~~d~~~e~l~~~~~il~~-lGl----~~~~v~l~~~~-----~~~~g~~~~~~~~~~~l~~~l~----~~g~ 466 (653)
|+||.++++.|++++++.++.++|+. ||| +++.+.+++++ ..++|..+.|+++...+.+.+. ..|+
T Consensus 166 e~f~~~~~~~de~~e~i~~~~~~l~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~~ 245 (471)
T 3a32_A 166 HIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGI 245 (471)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEcChHHHHHHHHHHHHHHHHHHHHhhCCCcCCCCeEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999889999999999999 999 78999999987 5667777779888766655544 4488
Q ss_pred ceEEcCCCcccccceeeEEEec---ccCCcccccceEEEecCCcccccEEEC--CCCCcccCEEEEecccCchHHHHHHH
Q 046808 467 DYQIDEGGGAFYGPKIDLKIED---ALGRKWQCSTIQVDFNLPQRFDIVYVD--SNSEKKRPIMIHRAVLGSLERFFGVL 541 (653)
Q Consensus 467 ~~~~~~~~~~~~g~~~d~~~~d---~~g~~~~~~~i~~d~~~~~r~d~~~~~--~~g~~~~p~~g~~~i~GgieRli~~L 541 (653)
++...++.++||||+++..+.| ++++.++++++++|+.++++||++|.+ .+|.. .|.+.+.+++||++|++++|
T Consensus 246 ~~~~~~~~~~~~gp~i~~~l~d~~~~l~~~~~~g~~~lD~~l~r~~d~~Yyt~~~~G~~-e~~~i~~~i~GgieRli~~l 324 (471)
T 3a32_A 246 DIVELEGEAAFYGPKLDFIMMVEESGVSKEWQMGTIQFDFNLPRRFRLYDVVREEFGIE-EVYIIHRALLGSIERFLGVY 324 (471)
T ss_dssp EEEEETTCSBTTBCEEEEEEEEESSSCEEEEEEEEEEEESSHHHHTTHHHHHHHHHCCS-CEEEEEEEEEEEHHHHHHHH
T ss_pred ceEecccchhhCCCccceEEeccHHhhhhhheeeeEEecccccccCCceEeccccCCce-eeEEEeccccCcHHHHHHHH
Confidence 8888888889999998887777 778888999999999999999988777 66766 56555556788999999999
Q ss_pred HHhhcCCCCCCCCCceEEEEecC------hhhHHHHHHHHHHHHhCCCeEEEeC--CCCHHHHHHHHH-HcCCCEEEEEC
Q 046808 542 IEHYAGDFPLWLSPIQARVLPVT------DTQLEYCNEVIKKLKTNGIRAEICH--GERLPKLIRNAE-KQKIPLMAVVG 612 (653)
Q Consensus 542 ~e~~~~~~P~~lap~~v~Vi~~~------~~~~~~a~~la~~Lr~~Gi~v~~d~--~~~~~kk~~~A~-~~gip~~iiiG 612 (653)
+|++++.||+|++|+||+|+|++ ++..++|.++++.||++|++|++|+ +.++|+|+++|+ +.|+|++|+||
T Consensus 325 ie~~~g~~p~~~ap~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~~g~k~~~a~~~~gip~~iiiG 404 (471)
T 3a32_A 325 LEHRRGRMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIESTAKPAVNVFIG 404 (471)
T ss_dssp HHHTTTCCCGGGCSCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEETTTHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHhCCCCCCCcCCceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHHhcCCCEEEEEC
Confidence 99887899999999999999997 6788999999999999999999998 589999999999 99999999999
Q ss_pred cccccCCeEEEEECCCCc--eeeeeHH-----HHHHHHHHHHhh
Q 046808 613 AKEVDAQTVTVRSRFGGE--LGTMKVD-----DFISRIKSATEN 649 (653)
Q Consensus 613 ~~e~~~~~V~vk~~~~~~--q~~v~~~-----el~~~i~~~~~~ 649 (653)
++|+++|+|+||+|++++ +..|+++ ++++.|.++++.
T Consensus 405 ~~e~~~~~V~vr~r~~~~q~~~~v~~~~~~~~~~~~~~~~~~~~ 448 (471)
T 3a32_A 405 AKEVREKVLDVRVFDLESMKRRRLAIAYGDAADAVENLAAVAEE 448 (471)
T ss_dssp HHHHHHTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred chhhhCCEEEEEECCCCccceEEEeecccchhHHHHHHHHHHHH
Confidence 999999999999999998 7889888 888888877764
No 6
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=2.7e-61 Score=528.59 Aligned_cols=345 Identities=19% Similarity=0.330 Sum_probs=311.2
Q ss_pred hhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhh-hcCccccccccccee
Q 046808 257 DHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWK-ISGHLDFYRENMYDQ 335 (653)
Q Consensus 257 ~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~-~sg~~~~~~~~~y~~ 335 (653)
-+.+|+.+.|++++ +..++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|. .+||++.|.++||.+
T Consensus 27 wy~~l~~~aglid~-r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v 105 (518)
T 3ial_A 27 WFDAIMDAAELVDR-RYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWV 105 (518)
T ss_dssp HHHHHHHHTTCEET-TSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEE
T ss_pred HHHHHHHHCCCccc-CCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEE
Confidence 35588888899887 5678999999999999999999999999999999999999999999996 589999999999999
Q ss_pred cccC----CceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee-eCchhHH
Q 046808 336 MNIE----DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF-CLEDQIK 410 (653)
Q Consensus 336 ~d~~----~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if-g~~~~~~ 410 (653)
.|.+ +++++||||+|++++.+|+++++||++||+|+||+|+|||+|.++ ++||+|+|||+|.|+|+| ++++++.
T Consensus 106 ~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~-~~GL~R~REF~q~e~h~f~~~~e~a~ 184 (518)
T 3ial_A 106 EKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKN-TKPLIRVREIHWNEAHCCHATAEDAV 184 (518)
T ss_dssp EEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCS-CBTTTBCSEEEEEEEEEEESSHHHHH
T ss_pred ecCCCcccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCC-CCCCceeeEEEEeeEEEEECCHHHHH
Confidence 8875 689999999999999999999999999999999999999999765 499999999999999999 6778888
Q ss_pred HHHHHHHHHHHHHH-HHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecc
Q 046808 411 DEIRAVLDLTEEIL-LQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDA 489 (653)
Q Consensus 411 d~~~e~l~~~~~il-~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~ 489 (653)
+++.++++++.++| +.|||+...+. ++ .|+ ...+++|++++|+.+.|
T Consensus 185 ~e~~~~l~~~~~i~~~~LGlp~~~~~---~~--------~~e--------------------~~~gA~yt~~iE~~~pd- 232 (518)
T 3ial_A 185 SQLSDYWKVIDTIFSDELCFKGQKLR---RV--------CWD--------------------RFPGADYSEVSDVVMPC- 232 (518)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCCEEEE---EC--------GGG--------------------CCTTCSEEEEEEEECTT-
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEeee---cC--------hhh--------------------ccCCCccceEEEEEcCC-
Confidence 88899999999999 99999643222 22 121 11357888888887766
Q ss_pred cCCcccccceE-EEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhcC----CCCCCCCCceEEEEecC
Q 046808 490 LGRKWQCSTIQ-VDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAG----DFPLWLSPIQARVLPVT 564 (653)
Q Consensus 490 ~g~~~~~~~i~-~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~----~~P~~lap~~v~Vi~~~ 564 (653)
|+.++++|++ +|+++++|||++|.+++|+...|+++++|+ | +|++++|+|+|++ .||+|++|+||+|+|+.
T Consensus 233 -gr~ie~gt~~~Lg~~~s~rf~i~y~d~~g~~~~~h~~~~G~--~-~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~ 308 (518)
T 3ial_A 233 -GRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGI--S-TRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIG 308 (518)
T ss_dssp -SCEEEEEEEEEEETHHHHHTTCCEECTTCCEECCEEEEEEE--E-THHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEES
T ss_pred -CCEEEEeceecccchhhhhcCcEEECCCCCEeeeEEeccch--H-HHHHHHHHHHhCCCCccccCCccceEEEEEEEee
Confidence 8899999998 899889999999999999999999988775 3 9999999999975 89999999999999997
Q ss_pred ----------hhhHHHHHHHHHHHHhC-CCeEEEeC--CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCc-
Q 046808 565 ----------DTQLEYCNEVIKKLKTN-GIRAEICH--GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGE- 630 (653)
Q Consensus 565 ----------~~~~~~a~~la~~Lr~~-Gi~v~~d~--~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~- 630 (653)
++..++|.+|++.|+++ |++|.+|+ +.++|+|+++|+.+|+|++|+||++|+++|+|+|++|++++
T Consensus 309 ~~~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~~ael~GvP~~i~vG~ke~e~g~V~vr~Rd~~~~ 388 (518)
T 3ial_A 309 CGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKD 388 (518)
T ss_dssp CSCTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCGG
T ss_pred cCccccccchHHHHHHHHHHHHHHHhccCeEEEEECCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcc
Confidence 45788999999999999 99999998 58999999999999999999999999999999999999999
Q ss_pred -eeeeeHHHH
Q 046808 631 -LGTMKVDDF 639 (653)
Q Consensus 631 -q~~v~~~el 639 (653)
+..|+++++
T Consensus 389 ~k~~v~~~el 398 (518)
T 3ial_A 389 QKRVIPITEV 398 (518)
T ss_dssp GCEEEEHHHH
T ss_pred ceeEeeHHHH
Confidence 999999999
No 7
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.1e-60 Score=518.93 Aligned_cols=354 Identities=19% Similarity=0.265 Sum_probs=315.5
Q ss_pred hhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhh-cCccccccccccee
Q 046808 257 DHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKI-SGHLDFYRENMYDQ 335 (653)
Q Consensus 257 ~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~-sg~~~~~~~~~y~~ 335 (653)
=|.+|++++|++++ ..++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||.+
T Consensus 34 wy~~l~~~~~lid~--~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~ 111 (519)
T 4hvc_A 34 WYSQVITKSEMIEY--HDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWV 111 (519)
T ss_dssp HHHHHHHHTTCEEE--CSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEE
T ss_pred HHHHHHHHCCCeEe--cCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEE
Confidence 37789999999876 4679999999999999999999999999999999999999999999996 79999999999999
Q ss_pred cccCC----ceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCchhHH
Q 046808 336 MNIED----ELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIK 410 (653)
Q Consensus 336 ~d~~~----~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~~~~~ 410 (653)
.|.++ +.++||||+|++++.+|+++++||++||+|++|+|+|||+|.++ .+||+|+|||+|.|+|+ |++++++.
T Consensus 112 ~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~-~~Gl~R~ReF~q~e~h~~~~~~e~a~ 190 (519)
T 4hvc_A 112 TRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKH-PQPFLRTREFLWQEGHSAFATMEEAA 190 (519)
T ss_dssp EEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSC-CBTTTBCSEEEEEEEEEEESSHHHHH
T ss_pred eccCCcccccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCC-CCCCcceeEEEEeeEEEEecCHHHHH
Confidence 88765 46999999999999999999999999999999999999999666 39999999999999998 78889999
Q ss_pred HHHHHHHHHHHHHHHHc-CCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEE-ec
Q 046808 411 DEIRAVLDLTEEILLQF-GFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKI-ED 488 (653)
Q Consensus 411 d~~~e~l~~~~~il~~l-Gl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~-~d 488 (653)
+++.++++++.++++.| ||| +.+..++++.++.|.+..| +++. .+
T Consensus 191 ~E~~~~l~~~~~i~~~ll~lp-~~~~~~t~~e~~~Ga~~t~--------------------------------~iEa~~p 237 (519)
T 4hvc_A 191 EEVLQILDLYAQVYEELLAIP-VVKGRKTEKEKFAGGDYTT--------------------------------TIEAFIS 237 (519)
T ss_dssp HHHHHHHHHHHHHHHTTSCCC-CEEEECCTTTSCTTSSEEE--------------------------------EEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCc-ceeeecCCccccCCchhhe--------------------------------eeeeeec
Confidence 99999999999999997 895 4444566666666654322 2222 35
Q ss_pred ccCCcccccce-EEEecCCcccccEEECC--CCCcccCEEEEecccCchHHHHHHHHHhhc----CCCCCCCCCceEEEE
Q 046808 489 ALGRKWQCSTI-QVDFNLPQRFDIVYVDS--NSEKKRPIMIHRAVLGSLERFFGVLIEHYA----GDFPLWLSPIQARVL 561 (653)
Q Consensus 489 ~~g~~~~~~~i-~~d~~~~~r~d~~~~~~--~g~~~~p~~g~~~i~GgieRli~~L~e~~~----~~~P~~lap~~v~Vi 561 (653)
..|+.|+|+|+ ++++.++++||++|.++ +|+...++++++|+ | +|++++|+|+|+ ..||+|++|+||+|+
T Consensus 238 ~~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~~g~~~~vh~~~~Gi--~-~R~l~aliE~~~d~~gl~~P~~laP~qV~Ii 314 (519)
T 4hvc_A 238 ASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGL--T-TRTIGVMTMVHGDNMGLVLPPRVACVQVVII 314 (519)
T ss_dssp TTTEEEEEEEEEEEETHHHHHHTCEEECTTSTTCEEECEEEEEEE--E-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEE
T ss_pred cCCCEEeecccccccchhhhhcCcEEeccccCCCEEEEEEccccH--H-HHHHHHHHHHhCccccccccccCCCeEEEEE
Confidence 78999999998 68988899999999986 57777888887775 4 999999999875 479999999999999
Q ss_pred ecC----------hhhHHHHHHHHHHHHhCCCeEEEeC-CC-CHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCC
Q 046808 562 PVT----------DTQLEYCNEVIKKLKTNGIRAEICH-GE-RLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGG 629 (653)
Q Consensus 562 ~~~----------~~~~~~a~~la~~Lr~~Gi~v~~d~-~~-~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~ 629 (653)
|++ ++..++|.+|++.|+++|++|++|+ +. ++|+||++|+++|+|++|+||++|+++|+|+||+|+++
T Consensus 315 pi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~~ael~GiP~~ivIG~kele~g~V~vr~R~tg 394 (519)
T 4hvc_A 315 PCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTG 394 (519)
T ss_dssp ECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTTC
T ss_pred EecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHhcCCCEEEEECchhhcCCeEEEEECCCC
Confidence 997 4578899999999999999999999 64 89999999999999999999999999999999999999
Q ss_pred ceeeeeHHHHHHHHHHHHhh
Q 046808 630 ELGTMKVDDFISRIKSATEN 649 (653)
Q Consensus 630 ~q~~v~~~el~~~i~~~~~~ 649 (653)
+|..|+++++++.|+++++.
T Consensus 395 eq~~v~~~el~~~l~~ll~~ 414 (519)
T 4hvc_A 395 EKLTVAENEAETKLQAILED 414 (519)
T ss_dssp CEEEEEGGGHHHHHHHHHHH
T ss_pred CccceeHHHHHHHHHHHHHH
Confidence 99999999999999887764
No 8
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=1.4e-59 Score=516.47 Aligned_cols=354 Identities=19% Similarity=0.277 Sum_probs=306.0
Q ss_pred hchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhh-cCcccccccccc
Q 046808 255 RRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKI-SGHLDFYRENMY 333 (653)
Q Consensus 255 k~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~-sg~~~~~~~~~y 333 (653)
...|.+++++.|++.+. .++|++||+|.|+.++++|+++|++.+.++||++|.||+|++.++|.+ +||++.|.++||
T Consensus 15 ~~~~~~l~~~~~li~~~--~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy 92 (477)
T 1hc7_A 15 SEWYLEVIQKAELADYG--PVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELA 92 (477)
T ss_dssp HHHHHHHHHHTTSEEEC--SSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCE
T ss_pred hHHHHHHHHHCCCeeec--CCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceE
Confidence 55799999999998763 479999999999999999999999999999999999999999999988 899999999999
Q ss_pred eecccC----CceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeee-Cchh
Q 046808 334 DQMNIE----DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFC-LEDQ 408 (653)
Q Consensus 334 ~~~d~~----~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg-~~~~ 408 (653)
.+.|.+ ++.++||||+|++++++|++++.+|++||+|+||+|+|||+|.++ +||+|+|||+|+|+|+|+ ++++
T Consensus 93 ~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~--rGl~R~REF~q~d~~~~~~~~~~ 170 (477)
T 1hc7_A 93 VVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRT--RPFLRTSEFLWQEGHTAHATREE 170 (477)
T ss_dssp EEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSC--BTTTBCSEEEEEEEEEEESSHHH
T ss_pred EEECCCCccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCC--CCcceeEEEEEccEEEEeCCHHH
Confidence 999887 889999999999999999999999999999999999999999987 699999999999999965 4555
Q ss_pred HHHHHHHHHHHHHHHH-HHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEe
Q 046808 409 IKDEIRAVLDLTEEIL-LQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIE 487 (653)
Q Consensus 409 ~~d~~~e~l~~~~~il-~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~ 487 (653)
+.+++..++.++.++| +.|||+ +.+.+++++.++.|....| .++..+.
T Consensus 171 ad~E~~~~l~~~~~i~~~~Lgl~-~~~~~~~~~e~~~g~~~~~------------------------------~ie~~~~ 219 (477)
T 1hc7_A 171 AEEEVRRMLSIYARLAREYAAIP-VIEGLKTEKEKFAGAVYTT------------------------------TIEALMK 219 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC-CEEEECCTTTSCTTSSEEE------------------------------EEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCe-EEEEeCChHHhcCCcccce------------------------------EEEEEcC
Confidence 6666677888899999 899996 8888888765555543322 1222222
Q ss_pred cccCCcccccceE-EEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhc----CCCCCCCCCceEEEEe
Q 046808 488 DALGRKWQCSTIQ-VDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYA----GDFPLWLSPIQARVLP 562 (653)
Q Consensus 488 d~~g~~~~~~~i~-~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~----~~~P~~lap~~v~Vi~ 562 (653)
| |+.+++++++ ++++++.++|++|.+.+|+...|+++++|+ | +|++++|+|+|+ ..||+|++|+||+|+|
T Consensus 220 d--gr~~~~gt~~~lg~~~s~~~g~~y~~~~G~~~~~~~~~~Gi--g-eRli~~lie~~~d~~gl~~P~~laP~qV~Iip 294 (477)
T 1hc7_A 220 D--GKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGL--S-WRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVP 294 (477)
T ss_dssp T--SCEEEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEE--E-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEE
T ss_pred C--CcEEEEeeeEEcccccccccCeEEECCCCCEEeeeEeeccH--H-HHHHHHHHHHhCccccccCCcccCCceEEEEE
Confidence 3 6677888876 788888899999999888877788888886 6 999999999885 4899999999999999
Q ss_pred cCh-----hhHHHHHHHHHHHHhCCCeEEEeC--CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeee
Q 046808 563 VTD-----TQLEYCNEVIKKLKTNGIRAEICH--GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMK 635 (653)
Q Consensus 563 ~~~-----~~~~~a~~la~~Lr~~Gi~v~~d~--~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~ 635 (653)
+++ +..++|.+|++.||++|++|.+|+ +.++|+|+++|++.|+|++|+||++|+++|+|+||+|+ ++|..|+
T Consensus 295 i~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~-~eq~~v~ 373 (477)
T 1hc7_A 295 IYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRL-GGKETLP 373 (477)
T ss_dssp CCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETT-SCCCEEE
T ss_pred cCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHhhcCCCEEEEECcchhcCCEEEEEEec-CceEEEe
Confidence 975 688999999999999999999998 47999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHhh
Q 046808 636 VDDFISRIKSATEN 649 (653)
Q Consensus 636 ~~el~~~i~~~~~~ 649 (653)
++++++.|++++++
T Consensus 374 ~~el~~~l~~~l~~ 387 (477)
T 1hc7_A 374 LAALPEALPGKLDA 387 (477)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887754
No 9
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=8e-59 Score=525.84 Aligned_cols=393 Identities=19% Similarity=0.290 Sum_probs=314.2
Q ss_pred hhHHhhhchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccc
Q 046808 249 FKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFY 328 (653)
Q Consensus 249 ~~eeakk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~ 328 (653)
..+++++++|+.|++. +++. ..++|++||+|.|++++++|+++|++++.++||++|.||+|++.++|.++||++.|
T Consensus 14 ~~~~~~~~~h~~l~~~-g~~~---~~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~ 89 (572)
T 2j3l_A 14 VPNDAEVLSHQILLRA-GYIR---QVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETY 89 (572)
T ss_dssp CCTTCCSHHHHHHHHT-TSEE---EEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHS
T ss_pred CCcccCCcCHHHHHhC-CCcc---ccCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCcccc
Confidence 4568889999999997 6543 36899999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCc-h
Q 046808 329 RENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE-D 407 (653)
Q Consensus 329 ~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~-~ 407 (653)
.++||+|.|+++++++||||+|+++++++++++.+|++||+|+||+|+|||+|.++ ++||+|+|||+|.|+|+||.+ +
T Consensus 90 ~~~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~-~~Gl~R~ReF~q~d~~~f~~~~~ 168 (572)
T 2j3l_A 90 GPNLYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRS-RSGLLRGREFIMKDGYSFHADEA 168 (572)
T ss_dssp CTTSCEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSC-CTGGGSCSEEEEEEEEEEESSHH
T ss_pred chheEEEecCCCCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcCc-ccCccccceeEEeeeEEEcCCHH
Confidence 99999999999999999999999999999999999999999999999999999997 699999999999999999995 5
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcc-c----------------------------------ccC-------
Q 046808 408 QIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPE-K----------------------------------AVG------- 445 (653)
Q Consensus 408 ~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~-~----------------------------------~~g------- 445 (653)
++.+++.+++.++.++|+.|||+ +.+.+++... . .+.
T Consensus 169 ~~~~e~~~~~~~~~~~~~~lgl~-~~~~~~~~g~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (572)
T 2j3l_A 169 SLDQSYRDYEKAYSRIFERCGLE-FRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHE 247 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGGTCSSEEEEEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc-EEEEecccccCCCcccEEEEEEcCCCcceEEEeCCCCcccchhhhhcccccccccc
Confidence 56667778899999999999996 8887765221 0 000
Q ss_pred ---------Cchh--HHHHH-----------------------------------HHHHHHHHh----------------
Q 046808 446 ---------GDDI--WEKAT-----------------------------------SALRDALDD---------------- 463 (653)
Q Consensus 446 ---------~~~~--~~~~~-----------------------------------~~l~~~l~~---------------- 463 (653)
.++. -+... ..+.+.+..
T Consensus 248 ~~~~~~~~~~~~~~ti~~l~~~lg~~~~~i~K~l~~~~~~~~~~vli~gd~el~~~kl~~~l~~~~l~~a~~~el~~~~g 327 (572)
T 2j3l_A 248 TQLDLEKIATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKLKNFLGADFLDEATEEDARRVLG 327 (572)
T ss_dssp CCCCCEEEECTTCCSHHHHHHHHTCCGGGBEEEEEEEETTEEEEEEEETTCCBCHHHHHHHHTCSCEEECCHHHHHHHHS
T ss_pred cccccceecCCCCCcHHHHHHHhCcCHHHeEEEEEEEeCCcEEEEEeeCccccCHHHHHHhhCCCccccCCHHHHHHhhC
Confidence 0000 00000 001111110
Q ss_pred --------c----CCceEEcCCCc---ccc-cc-eeeEEEec-ccCCccc------------------c-cceE------
Q 046808 464 --------K----GWDYQIDEGGG---AFY-GP-KIDLKIED-ALGRKWQ------------------C-STIQ------ 500 (653)
Q Consensus 464 --------~----g~~~~~~~~~~---~~~-g~-~~d~~~~d-~~g~~~~------------------~-~~i~------ 500 (653)
. ++++.+|+... .++ |. +.+.+..+ .+|+.++ | ++++
T Consensus 328 ~~~g~~~p~gl~~~i~~~iD~sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~gg~~~~~~~ie 407 (572)
T 2j3l_A 328 AGFGSIGPVNVSEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGVLAFTKGIE 407 (572)
T ss_dssp SCTTSCCSTTCCTTCEEEEETTTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTSSSBEEEEEEEE
T ss_pred CCccccCCccCCCCCcEEEehhhhcCCceEEccCCCCceeeccccccCcCcCcHHHHHHHhcCCcccccCCcceeccceE
Confidence 0 11222222100 000 00 00011111 1233332 2 2333
Q ss_pred --EEecCC----cccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhh----cCCCCCCCCCceEEEEecC---hhh
Q 046808 501 --VDFNLP----QRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHY----AGDFPLWLSPIQARVLPVT---DTQ 567 (653)
Q Consensus 501 --~d~~~~----~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~----~~~~P~~lap~~v~Vi~~~---~~~ 567 (653)
+.|++| ++||+.|.+.+|+..+|+|||+|| |++|++++|+|++ ++.||.|++|+||+|+|++ ++.
T Consensus 408 vg~~f~Lg~~ys~~~~~~~~~~~g~~~~p~~g~~gi--GveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~ 485 (572)
T 2j3l_A 408 IGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGI--GVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQ 485 (572)
T ss_dssp EEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEE--EHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTCHHH
T ss_pred EEEEeccCcccccccCCEEECCCCcEEeeeeecccc--CHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCCHHH
Confidence 337886 678889999888888999988897 7999999999987 4689999999999999998 788
Q ss_pred HHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHH
Q 046808 568 LEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSA 646 (653)
Q Consensus 568 ~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~ 646 (653)
.++|.+|++.||++|++|++|+ ++++|+|+++|++.|+|++||||++| ++|+|+||+|++++|..++++++++.|+ +
T Consensus 486 ~~~a~~l~~~Lr~~gi~v~~d~~~~~~g~k~~~a~~~g~p~~iivG~~e-~~~~v~vk~~~~~~q~~v~~~~l~~~l~-~ 563 (572)
T 2j3l_A 486 TKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKKA-VDGVVEVKIKRTGEMLEVRKEELESTLS-I 563 (572)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSCCHHHHHHHHHHHCCSEEEEECGGG-GGTEEEEEETTTCCEEEEEHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCCCCHhHHHHHHHhcCCCEEEEEcccc-cCCeEEEEEcCCCcEEEEeHHHHHHHHH-H
Confidence 9999999999999999999999 89999999999999999999999999 9999999999999999999999999999 8
Q ss_pred Hhhhc
Q 046808 647 TENRT 651 (653)
Q Consensus 647 ~~~~~ 651 (653)
+++..
T Consensus 564 ~~~~~ 568 (572)
T 2j3l_A 564 LMNTT 568 (572)
T ss_dssp HCC--
T ss_pred Hhccc
Confidence 76553
No 10
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=2.2e-59 Score=517.82 Aligned_cols=354 Identities=17% Similarity=0.296 Sum_probs=313.3
Q ss_pred chhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhh-cCcccccccccce
Q 046808 256 RDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKI-SGHLDFYRENMYD 334 (653)
Q Consensus 256 ~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~-sg~~~~~~~~~y~ 334 (653)
++|.+|++++|++++ +...+|+++|+|.|++++++|++++++.+.+ ||++|.||+|++.++|.+ +||++.|.++||.
T Consensus 42 ~~~~~l~~~~glid~-~~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~ 119 (501)
T 1nj1_A 42 EWFHNILEEAEIIDQ-RYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYW 119 (501)
T ss_dssp HHHHHHHHHTTCEEC-CCSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCE
T ss_pred HhHHHHHHHCCCccc-cCCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEE
Confidence 789999999999887 3457999999999999999999999999999 999999999999999988 7999999999999
Q ss_pred ecccC----CceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCC-CCCCCcceeceeE-Ecceeee-eCch
Q 046808 335 QMNIE----DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELS-GSLHGLFRVRGFT-QDDAHIF-CLED 407 (653)
Q Consensus 335 ~~d~~----~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~-~~~~GL~R~REF~-q~d~~if-g~~~ 407 (653)
+.|.+ +++++||||+|++++++|++++.++++||+|+||+|+|||+|.+ + +||+|+|||+ |.|+|+| ++++
T Consensus 120 ~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~--rGl~R~REF~~q~e~~~~~~~~e 197 (501)
T 1nj1_A 120 VTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHT--RPLIRVREITTFKEAHTIHATAS 197 (501)
T ss_dssp EEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCC--BTTTBCSEEEEEEEEEEEESSHH
T ss_pred EecCCCcccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCC--CCCceeEEEeeeeeEEEEECCHH
Confidence 98875 78999999999999999999999999999999999999999999 5 7999999999 9999975 6667
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEe
Q 046808 408 QIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIE 487 (653)
Q Consensus 408 ~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~ 487 (653)
++.+++.+++.++.++|+.|||+ +.+.+++.+..+.+....| .++..+.
T Consensus 198 ~a~~e~~~~l~~~~~i~~~Lgl~-~~~~~~~~~e~~~~a~~~~------------------------------die~~l~ 246 (501)
T 1nj1_A 198 EAEEQVERAVEIYKEFFNSLGIP-YLITRRPPWDKFPGSEYTV------------------------------AFDTLMP 246 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-CEEEECCTTTSCTTCSEEE------------------------------EEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCe-EEEEeCCchhhcCCcccce------------------------------EEEEEcC
Confidence 77777888999999999999996 7777665443333332211 1233333
Q ss_pred cccCCcccccceE-EEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhcC----CCCCCCCCceEEEEe
Q 046808 488 DALGRKWQCSTIQ-VDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAG----DFPLWLSPIQARVLP 562 (653)
Q Consensus 488 d~~g~~~~~~~i~-~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~----~~P~~lap~~v~Vi~ 562 (653)
+ |+.+++++++ ++.++++++|++|.+.+|+...|+++++|+ | +|++++|+|+|++ .||+|++|+||+|+|
T Consensus 247 ~--g~~~ei~t~~~lg~~~a~~~~~ry~~~~g~~~~~h~~g~Gi--g-eRli~aliE~~~d~~Gl~~P~~laP~qV~Iip 321 (501)
T 1nj1_A 247 D--GKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGL--S-DRVIASVIAIHGDESGLCLPPDVAAHQVVIVP 321 (501)
T ss_dssp T--SCEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEE--C-THHHHHHHHHTCCSSSEECCTTTSSCSEEEEE
T ss_pred C--CCEEEEEEEEeccccchhhcCeEEECCCCCEEeeeeccccH--H-HHHHHHHHHHcCcccCccCCccccCceEEEEE
Confidence 3 7778888875 777778999999999888877888887786 6 9999999999874 799999999999999
Q ss_pred c-C-h---hhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeH
Q 046808 563 V-T-D---TQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKV 636 (653)
Q Consensus 563 ~-~-~---~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~ 636 (653)
+ . + +..++|.+|++.||++|++|.+|+ +.++|+|+++|++.|+|++|+||++|+++|+|+||+|++++|..|++
T Consensus 322 i~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k~~~a~~~G~p~~iiiG~~e~~~~~V~vr~r~t~eq~~v~~ 401 (501)
T 1nj1_A 322 IIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADL 401 (501)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHHHHHHHEECSEEEEECHHHHTTTEEEEEESSSCCEEEEET
T ss_pred eccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEECcchhhCCEEEEEECCCCceEEEeH
Confidence 9 5 4 688999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 046808 637 DDFISRIKSATEN 649 (653)
Q Consensus 637 ~el~~~i~~~~~~ 649 (653)
+++++.|++++++
T Consensus 402 ~el~~~l~~~l~~ 414 (501)
T 1nj1_A 402 QGIEETLRELMKD 414 (501)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887764
No 11
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=7e-59 Score=509.51 Aligned_cols=355 Identities=19% Similarity=0.288 Sum_probs=312.3
Q ss_pred hchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhh-cCcccccccccc
Q 046808 255 RRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKI-SGHLDFYRENMY 333 (653)
Q Consensus 255 k~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~-sg~~~~~~~~~y 333 (653)
...|.+|+++.||+++ +...+|+++|+|.|+.++++|++++++++.++||++|.||+|++.++|.+ +||++.|.++||
T Consensus 8 ~~~~~~l~~~~~li~~-~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy 86 (459)
T 1nj8_A 8 SEWYSDILEKAEIYDV-RYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVY 86 (459)
T ss_dssp HHHHHHHHHHTSSCBC-CSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCE
T ss_pred cHhHHHHHHhCCCccc-cCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhE
Confidence 5679999999999887 34579999999999999999999999999999999999999999999985 799999999999
Q ss_pred eecccC----CceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCC-CCCCCcceeceeE-EcceeeeeC-c
Q 046808 334 DQMNIE----DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELS-GSLHGLFRVRGFT-QDDAHIFCL-E 406 (653)
Q Consensus 334 ~~~d~~----~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~-~~~~GL~R~REF~-q~d~~ifg~-~ 406 (653)
.|.|.+ ++.++||||+|++++++|++++.+|++||+|+||+|+|||+|.+ + +||+|+|||+ |.|+|+|+. +
T Consensus 87 ~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~--rGl~R~REF~qq~d~~~~~~~~ 164 (459)
T 1nj8_A 87 WVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHT--RPLIRLREIMTFKEAHTAHSTK 164 (459)
T ss_dssp EEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCC--BTTTBCSBCSCEEEEEEEESSH
T ss_pred EEeccCcccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCC--CCceEeeeeeccCcEEEEECCH
Confidence 999886 89999999999999999999999999999999999999999999 6 7999999999 999998755 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEE
Q 046808 407 DQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKI 486 (653)
Q Consensus 407 ~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~ 486 (653)
+++..++.+++.++.++|+.|||+ +.+.+++...++.|....| .++..+
T Consensus 165 ~~a~~e~~~~i~~~~~~~~~LGl~-~~~~~~~~~ek~~ga~~~~------------------------------~ie~~~ 213 (459)
T 1nj8_A 165 EEAENQVKEAISIYKKFFDTLGIP-YLISKRPEWDKFPGAEYTM------------------------------AFDTIF 213 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC-CEEEEECTTSCCTTCSEEE------------------------------EEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCc-eEEeecCchhhcCCcccce------------------------------eEEEEc
Confidence 556666778999999999999996 7777776544443332211 123322
Q ss_pred ecccCCcccccceE-EEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhc----CCCCCCCCCceEEEE
Q 046808 487 EDALGRKWQCSTIQ-VDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYA----GDFPLWLSPIQARVL 561 (653)
Q Consensus 487 ~d~~g~~~~~~~i~-~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~----~~~P~~lap~~v~Vi 561 (653)
.| |+.+++++++ ++.+++.++|++|.+.+|+...++++++|+ | +|++++|+|+++ ..||+|++|+||+|+
T Consensus 214 ~d--g~~~e~gt~~~lg~~~s~~~~~~Y~~~~G~~~~v~~~~~Gi--g-eRli~alie~~~d~~gl~~P~~laP~qv~Ii 288 (459)
T 1nj8_A 214 PD--GRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGI--S-DRVIASIIAIHGDEKGLILPPIVAPIQVVIV 288 (459)
T ss_dssp TT--SCEEEEEEEEEEETHHHHHTTCEEECTTSSEEECEEEEEEE--C-THHHHHHHHHHCBTTBCCCCTTSCSSSEEEE
T ss_pred CC--CcEEEEEEEeecccccccccCeEEECCCCCEeeeeEeeccH--H-HHHHHHHHHHhCCCceeEcCCcCCCCcEEEE
Confidence 23 7778888885 788888899999999888777778887776 6 999999999876 389999999999999
Q ss_pred ec-C-h---hhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeee
Q 046808 562 PV-T-D---TQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMK 635 (653)
Q Consensus 562 ~~-~-~---~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~ 635 (653)
|+ + + +..++|.+|++.||++ ++|.+|+ +.++|+|+++|++.|+|++|+||++|+++|+|+||+|++++|..|+
T Consensus 289 pi~~~~~~~~~~~~a~~l~~~Lr~~-i~v~~D~~~~~~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~t~eq~~v~ 367 (459)
T 1nj8_A 289 PLIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVD 367 (459)
T ss_dssp ECCCSSCHHHHHHHHHHHHHHHHTT-SCEEECCSCSCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETTTCCEEEEE
T ss_pred ecccCCcHHHHHHHHHHHHHHHhhh-cEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchhcCCEEEEEECCCCceEEEe
Confidence 99 5 3 6889999999999999 9999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046808 636 VDDFISRIKSATEN 649 (653)
Q Consensus 636 ~~el~~~i~~~~~~ 649 (653)
++++++.|++.+++
T Consensus 368 ~~el~~~l~~~l~~ 381 (459)
T 1nj8_A 368 ETQLMEVVEKTLNN 381 (459)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887754
No 12
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=7.1e-59 Score=511.00 Aligned_cols=381 Identities=17% Similarity=0.241 Sum_probs=303.1
Q ss_pred hhHHhhhchhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccc
Q 046808 249 FKEEAKRRDHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFY 328 (653)
Q Consensus 249 ~~eeakk~~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~ 328 (653)
..++++.++|+.|+++ +++ ...++|+|||+|.|++++++|+++|++++.++||++|.||+|++.++|+++|||+.|
T Consensus 34 ~~~~a~~~~h~ll~r~-g~i---~~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~ 109 (458)
T 2i4l_A 34 NPKEAEIVSHRLMLRA-GML---RQEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAY 109 (458)
T ss_dssp CCTTCCSHHHHHHHHT-TCE---EEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHS
T ss_pred ChhhcCcchHHHHhhc-CCe---eccCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCcccc
Confidence 4567889999999998 553 246899999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchh
Q 046808 329 RENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQ 408 (653)
Q Consensus 329 ~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~ 408 (653)
.++||+|.|++|++++||||+|+..+.+++..+.+|++||+|+||+|+|||+|.++ ++||+|+|||+|+|+|+||.+++
T Consensus 110 ~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~p-~~Gl~R~REF~q~d~~~f~~~~~ 188 (458)
T 2i4l_A 110 GPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRP-RFGVMRGREFLMKDAYSFDVDEA 188 (458)
T ss_dssp CTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSC-BTGGGBCSEEEEEEEEEEESSHH
T ss_pred ccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCCC-CCCcccccceEEeEEEEEECCHH
Confidence 99999999999999999999999999999999999999999999999999999555 59999999999999999996655
Q ss_pred -HHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcc------------cccCCch----------hHHHHHH----HHHHHH
Q 046808 409 -IKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPE------------KAVGGDD----------IWEKATS----ALRDAL 461 (653)
Q Consensus 409 -~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~------------~~~g~~~----------~~~~~~~----~l~~~l 461 (653)
+..++.+++.++.++|++|||+ +.+.+++... ...|.+. .|..+.. .+.+++
T Consensus 189 ~ad~e~~~~~~~~~~i~~~lGl~-~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~~~~~~~~~n~~~~~~~~~~~l~~~l 267 (458)
T 2i4l_A 189 GARKSYNKMFVAYLRTFARMGLK-AIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPII 267 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCC-EEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCCTTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc-eEEEEccccccCCccchhhhhhhhcCcceEEecccccccCHHHHhccccHhHHHHH
Confidence 4455666778899999999996 8887776531 1122211 0110000 011112
Q ss_pred HhcC-CceEEc----CCCc---ccccceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecccCc
Q 046808 462 DDKG-WDYQID----EGGG---AFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGS 533 (653)
Q Consensus 462 ~~~g-~~~~~~----~~~~---~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~Gg 533 (653)
+..+ +. ... .+.. .++++++.+.--...|..|++++ ..+.++|.+|.+.+|+..+|+|+++|| |
T Consensus 268 ~~~~~~~-~~~~~~~~g~~~~~~~~~~~l~~~rgl~~G~iFelg~-----~~s~~~g~ry~~~~G~~~p~~~~gfgi--G 339 (458)
T 2i4l_A 268 KQWTSVY-AATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGT-----KYSDSMKANVTGPDGTDAPIHGGSYGV--G 339 (458)
T ss_dssp HHHHHSC-EEETTTCCTTHHHHHSCTTTEEEEEEEEEEEEEEEET-----HHHHHTTCEEECTTSCEEECEEEEEEE--E
T ss_pred hcCchhh-hcChhhcccccccCCCCCcCceeeeeeccCcEEEecc-----cccccCCcEEECCCCCEeceEEeeecc--c
Confidence 1110 00 011 1111 13333333221111343343321 223456778888888776677888897 7
Q ss_pred hHHHHHHHHHhh----cCCCCCCCCCceEEEEecC---hhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCC
Q 046808 534 LERFFGVLIEHY----AGDFPLWLSPIQARVLPVT---DTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKI 605 (653)
Q Consensus 534 ieRli~~L~e~~----~~~~P~~lap~~v~Vi~~~---~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gi 605 (653)
++|++++|+|++ +..||.|++|+||+|+|++ ++..++|.+++++||++|++|++|+ ++++|+|+++|++.|+
T Consensus 340 veRli~al~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k~~~ad~~g~ 419 (458)
T 2i4l_A 340 VSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGI 419 (458)
T ss_dssp HHHHHHHHHHHSEETTEECCCTTTCSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhccccCCcCCcccCCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHHHHHHhcCC
Confidence 999999999987 4589999999999999996 7788999999999999999999999 8999999999999999
Q ss_pred CEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHH
Q 046808 606 PLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRI 643 (653)
Q Consensus 606 p~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i 643 (653)
|++||||++|+++|+|+||+|++++|..++++++++.|
T Consensus 420 p~~iivG~~e~~~g~v~vr~r~~~~~~~v~~~~l~~~l 457 (458)
T 2i4l_A 420 PWQIHVGPRGLAEGKVELKRRSDGARENLALADVVARL 457 (458)
T ss_dssp SEEEEECHHHHTTTEEEEEETTTCCEEEEETTTTTCC-
T ss_pred CEEEEECCchhhCCEEEEEECCCCcEEEEeHHHHHHhh
Confidence 99999999999999999999999999999999987654
No 13
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=3.6e-56 Score=489.46 Aligned_cols=354 Identities=19% Similarity=0.267 Sum_probs=302.9
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhc-Cc-ccccccccceecccC-CceEEeccCC
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKIS-GH-LDFYRENMYDQMNIE-DELYQLRPMN 349 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~s-g~-~~~~~~~~y~~~d~~-~~~l~LrP~~ 349 (653)
..++|++||+|.++.+++.|++++++++.++||++|.||+|++.++|.++ |+ |+.+.++||+|.|++ |+.++|||+.
T Consensus 33 ~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~ 112 (467)
T 4e51_A 33 TGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPEN 112 (467)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCS
T ss_pred CCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCccc
Confidence 45799999999999999999999999999999999999999999999999 88 788889999999999 9999999999
Q ss_pred hHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCC
Q 046808 350 CPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGF 429 (653)
Q Consensus 350 ~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl 429 (653)
|+++++++..+..++ ++|+|+||+|+|||+|+|+ .| |+|||+|+|+|+||.+++.+| +|++.++.++|+.||+
T Consensus 113 t~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E~~~--~g--R~ReF~Q~d~ei~g~~~~~ad--aEvi~l~~~~l~~lGl 185 (467)
T 4e51_A 113 TAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHERPQ--RG--RYRQFHQVGVEALGFAGPDAD--AEIVMMCQRLWEDLGL 185 (467)
T ss_dssp HHHHHHHHHHTTTTT-TSCEEEEEEEEEECCCCC-------CCSEEEEEEEEEETCCCSHHH--HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHccccc-CCCEEEEEEccEEccCCCC--CC--CcCceEEEEEEEEeCCChHHH--HHHHHHHHHHHHHcCC
Confidence 999999998887777 6999999999999999988 78 999999999999999999888 6999999999999999
Q ss_pred CeEEEEecCCcc------------cccC-----C-ch-----------hHH-------------------------HHHH
Q 046808 430 NKYEVNLSTKPE------------KAVG-----G-DD-----------IWE-------------------------KATS 455 (653)
Q Consensus 430 ~~~~v~l~~~~~------------~~~g-----~-~~-----------~~~-------------------------~~~~ 455 (653)
+++.+.+|+++. .++. . ++ .|+ ...+
T Consensus 186 ~~~~i~in~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~~~~~~l~ 265 (467)
T 4e51_A 186 TGIKLEINSLGLAEERAAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFE 265 (467)
T ss_dssp CCEEEEEEECCCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCHHHHHHHH
T ss_pred CceEEEEeCCCchhhhHHHHHHHHHHHHHHHhccCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhHHHHHHHH
Confidence 999999998642 1110 0 00 000 1124
Q ss_pred HHHHHHHhcCCceEEcCC---CcccccceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecccC
Q 046808 456 ALRDALDDKGWDYQIDEG---GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLG 532 (653)
Q Consensus 456 ~l~~~l~~~g~~~~~~~~---~~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~G 532 (653)
.|.+.|+..|++|.+|++ ..+||++++...+.+..|.. ++| ..|+|||. +.+..|++..|+||+ ++
T Consensus 266 ~l~~~L~~~gi~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~---~tI----~~GGRYD~-Lv~~~g~~~~PavGf-a~-- 334 (467)
T 4e51_A 266 GLQRLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQ---GTV----AAGGRYDP-LIEQLGGKPTAACGW-AM-- 334 (467)
T ss_dssp HHHHHHHHTTCCEEECTTCCCSCTTCCSEEEEEEECC-------CEE----EEEEECTH-HHHHTTSSCCCEEEE-EE--
T ss_pred HHHHHHHHcCCeEEEcCccccCccccCCeEEEEEECCCCCc---cee----cCCCcHHH-HHHHhCCCCCCceee-hH--
Confidence 567788889999999998 56899998777777777753 345 46899996 556677778999986 44
Q ss_pred chHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeCC-----CCHHHHHHHHHHcCCCE
Q 046808 533 SLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICHG-----ERLPKLIRNAEKQKIPL 607 (653)
Q Consensus 533 gieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~~-----~~~~kk~~~A~~~gip~ 607 (653)
|+||++.+|.++ +.+|. ++|.+|+|+|++++...+|.+++++||++|++|++|.. .++++|+++|++.|+||
T Consensus 335 gleRl~~~l~~~--~~~~~-~~p~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~ 411 (467)
T 4e51_A 335 GIERILELLKEE--HLVPE-QEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAF 411 (467)
T ss_dssp EHHHHHHHHHHT--TCCCC-CCCCSEEEEECSHHHHHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHhc--CCccc-CCCCeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCE
Confidence 799999999886 45554 78999999999999999999999999999999999984 79999999999999999
Q ss_pred EEEECcccccCCeEEEEECCC-C------ceeeeeHHHHHHHHHHHH
Q 046808 608 MAVVGAKEVDAQTVTVRSRFG-G------ELGTMKVDDFISRIKSAT 647 (653)
Q Consensus 608 ~iiiG~~e~~~~~V~vk~~~~-~------~q~~v~~~el~~~i~~~~ 647 (653)
+||||++|+++|+|+||+|++ + +|..++++++++.|++.+
T Consensus 412 ~iiiG~~E~~~g~V~vk~~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 412 AVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp EEEECHHHHHHTEEEEEEC---------CCCEEEEGGGHHHHHHHHH
T ss_pred EEEECcchhhCCeEEEEECCCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 999999999999999999999 8 999999999999999887
No 14
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=7.2e-55 Score=476.22 Aligned_cols=351 Identities=21% Similarity=0.308 Sum_probs=287.3
Q ss_pred ccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhc--CcccccccccceecccCCceEEeccCChH
Q 046808 274 AGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKIS--GHLDFYRENMYDQMNIEDELYQLRPMNCP 351 (653)
Q Consensus 274 ~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~s--g~~~~~~~~~y~~~d~~~~~l~LrP~~~~ 351 (653)
.++|++||+|.+++++++|++++++++.++||++|.||+|++.++|.++ +|++.+.++||++.|++|+.++|||++|+
T Consensus 4 ~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~ 83 (420)
T 1qe0_A 4 IPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTA 83 (420)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHH
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCChH
Confidence 5789999999999999999999999999999999999999999999999 88999999999999999999999999999
Q ss_pred HHHHHHHhhhccc-CCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 352 YHILVYQRKLQSY-RDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 352 ~~~~~~~~~~~s~-~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
+++++++++..++ +++|+|+||+|+|||+|+|+ .| |+|||+|+|+|+||.+++.+| +|++.++.++|+.||++
T Consensus 84 ~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~--~g--R~reF~q~~~e~~~~~~~~~d--~e~i~~~~~~l~~lgl~ 157 (420)
T 1qe0_A 84 AVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQ--KG--RYRQFNQFGVEAIGAENPSVD--AEVLAMVMHIYQSFGLK 157 (420)
T ss_dssp HHHHHHHHTTGGGCSSCSEEEEEEEEEECC-----------CCEEEEEEEEEESCCCHHHH--HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhccccccCCCCeEEEEecCEeecCCCc--CC--CcccEEEeeEEEECCCCchhH--HHHHHHHHHHHHHcCCC
Confidence 9999999888888 89999999999999999887 67 999999999999999999888 69999999999999998
Q ss_pred eEEEEecCCcc------------cccC----------------------------CchhHHHH--------------HHH
Q 046808 431 KYEVNLSTKPE------------KAVG----------------------------GDDIWEKA--------------TSA 456 (653)
Q Consensus 431 ~~~v~l~~~~~------------~~~g----------------------------~~~~~~~~--------------~~~ 456 (653)
++.+.+++... ++++ ..+.|..+ ...
T Consensus 158 ~~~i~l~~~g~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~~~~~l~~ 237 (420)
T 1qe0_A 158 HLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQ 237 (420)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHGGGGGGSCHHHHHTTTTCGGGGC------------CCCCGGGCCCTTHHHHHHH
T ss_pred ceEEEEcccCchhhHHHHHHHHHHHHHHHHhhhCHHHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHHHHHHHHH
Confidence 89999987321 1111 01112211 145
Q ss_pred HHHHHHhcCCceEEcCC---Cccccccee-eEEEeccc---CCcccccceEEEecCCcccccEEECCCCCcccCEEEEec
Q 046808 457 LRDALDDKGWDYQIDEG---GGAFYGPKI-DLKIEDAL---GRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRA 529 (653)
Q Consensus 457 l~~~l~~~g~~~~~~~~---~~~~~g~~~-d~~~~d~~---g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~ 529 (653)
+.+.|+..|+++.++++ ..+||++.+ ++ +.+.. |.. +++ ..|+|||. +.+..|++..|+||+ |
T Consensus 238 l~~~l~~~gi~~~~d~~l~rg~~yYtg~vfe~-~~~~~~~~g~~---~~i----~~GgRYd~-l~~~~g~~~~P~vg~-~ 307 (420)
T 1qe0_A 238 VKAYLDDLGIPYTEDPNLVRGLDYYTHTAFEL-MMDNPNYDGAI---TTL----CGGGRYNG-LLELLDGPSETGIGF-A 307 (420)
T ss_dssp HHHHHHHHTCCCEECTTCCCCCTTEEEEEEEE-EEECTTSTTSE---EEE----EEEEEEES-HHHHTTCCCCEEEEE-E
T ss_pred HHHHHHHcCCeEEECcccccchhhhcCeEEEE-EEcCCCCCCCc---Ccc----ccCccHHH-HHHHhCCCCCCEEEE-E
Confidence 66677778888899887 457887643 44 34444 432 233 67899996 556667778899864 6
Q ss_pred ccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEE
Q 046808 530 VLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLM 608 (653)
Q Consensus 530 i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~ 608 (653)
+ |++|++++| ++++..||. ++|+||+|+|++++..++|.+++++||++|++|++|+ +.++++|+++|++.|+|++
T Consensus 308 i--gveRl~~~l-e~~~~~~p~-~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a~~~g~p~~ 383 (420)
T 1qe0_A 308 L--SIERLLLAL-EEEGIELDI-EENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFT 383 (420)
T ss_dssp E--EHHHHHHHH-HHTTCCCCC-CCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSCCCHHHHHHHHHHTTCSEE
T ss_pred e--cHHHHHHHH-HhcCCCCCC-CCCCeEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEE
Confidence 5 799999987 777778998 8999999999988888999999999999999999999 8899999999999999999
Q ss_pred EEECcccccCCeEEEEECCCCceeeeeHHHHHHHHH
Q 046808 609 AVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 644 (653)
Q Consensus 609 iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~ 644 (653)
||||++|+++|+|+||+|++++|..++++++++.|+
T Consensus 384 iiig~~e~~~~~v~vk~~~~~~~~~v~~~~l~~~l~ 419 (420)
T 1qe0_A 384 IVIGDQELENNKIDVKNMTTGESETIELDALVEYFK 419 (420)
T ss_dssp EEECHHHHHHTCEEEEETTTCCEEEECTTHHHHHHH
T ss_pred EEECcchhhcCeEEEEECCCCCeEEEcHHHHHHHHh
Confidence 999999999999999999999999999999998875
No 15
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=100.00 E-value=7.5e-54 Score=474.09 Aligned_cols=377 Identities=19% Similarity=0.209 Sum_probs=300.6
Q ss_pred hhHhhhcccCccccc-cc--ccCcceecCccccHHHHHHHHHHHHHHH--hcCCeEEecCccCchhhhhhcCcccccccc
Q 046808 257 DHRRLGQDLDLFSIQ-DE--AGGGLVFWHPKGSIVRHIIEDFWKKSHI--EHDYDLLYTPHVAKADLWKISGHLDFYREN 331 (653)
Q Consensus 257 ~h~~l~~~l~l~~~~-~~--~~~G~~~~lP~g~~l~~~I~~~~~~~~~--~~G~~~I~tP~le~~~l~~~sg~~~~~~~~ 331 (653)
.+.+|+++.|++... +. ..+|++||+|.|++++++|+++|++.+. ++||++|.||+|++.+||++||||+.|.+.
T Consensus 7 ~~~~l~~r~g~i~~~~ei~~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~SGh~~~f~d~ 86 (505)
T 1ati_A 7 ELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADP 86 (505)
T ss_dssp HHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEE
T ss_pred HHHHHHHHCCCEEcchhhcCCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHhcCChhhcCcc
Confidence 477889998875432 22 2389999999999999999999999998 999999999999999999999999999888
Q ss_pred cceec------------------------------------------------------------ccC------------
Q 046808 332 MYDQM------------------------------------------------------------NIE------------ 339 (653)
Q Consensus 332 ~y~~~------------------------------------------------------------d~~------------ 339 (653)
||++. +.+
T Consensus 87 m~~~~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fn 166 (505)
T 1ati_A 87 MVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFN 166 (505)
T ss_dssp EEEC--------------------------------------------------------------------CCCCEEEE
T ss_pred ceeccccccccchhhhhhhhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhh
Confidence 88731 111
Q ss_pred -------------CceEEeccCChHHHHHHHHhhhccc-CCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeC
Q 046808 340 -------------DELYQLRPMNCPYHILVYQRKLQSY-RDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL 405 (653)
Q Consensus 340 -------------~~~l~LrP~~~~~~~~~~~~~~~s~-~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~ 405 (653)
++.++|||++|++++..|++.+.+| ++||+|+||+|+|||+|.++ ++||+|+|||+|.|+|+||+
T Consensus 167 lmf~t~~gpt~ee~~~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~p-r~GL~R~REF~q~d~~~f~~ 245 (505)
T 1ati_A 167 MMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITP-RNFIFRVREFEQMEIEYFVR 245 (505)
T ss_dssp CBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSC-CTGGGSCSEEEEEEEEEEEC
T ss_pred hhhhcccCCccccccceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCC-CCCCCcccceEEeeEEEEEC
Confidence 3578999999999998898889999 89999999999999999775 68999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCccccc--CCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceee
Q 046808 406 EDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAV--GGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKID 483 (653)
Q Consensus 406 ~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~--g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d 483 (653)
++++.+++++++.++.++|++|||+.+.+.+.+.+...+ +..+.|+. +++...| +. +..+..+++.++
T Consensus 246 ~e~~~~~~~~~i~~~~~i~~~LGl~~~~v~~~~~~~~~~~~~~~~~~d~------E~~~p~~--~~--e~~g~~~~~d~~ 315 (505)
T 1ati_A 246 PGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDI------LYRFPHG--SL--ELEGIAQRTDFD 315 (505)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEE------EEEETTE--EE--EEEEEEECTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEEECCCChHhhhcccHHHHhH------HhhcCCC--Cc--cchhhhccccee
Confidence 999999999999999999999999877777776543222 33333321 0000000 00 000111222111
Q ss_pred EEEec-ccCCcccccceEEEecCCcccccEEECCCCCcc-cCEEEEecccCchHHHHHHHHHhh--------cC-----C
Q 046808 484 LKIED-ALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKK-RPIMIHRAVLGSLERFFGVLIEHY--------AG-----D 548 (653)
Q Consensus 484 ~~~~d-~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~-~p~~g~~~i~GgieRli~~L~e~~--------~~-----~ 548 (653)
+.... ..|..+ .+++++++...++++.|.+.+|+.. .|.++.+++ |++|++.+|+|++ ++ .
T Consensus 316 L~~~~~~~~~~~--~~~~~~~n~~~~~~~~y~d~~g~~~y~p~vig~s~--GieRli~alle~~~~~~~~~~gd~~~gl~ 391 (505)
T 1ati_A 316 LGSHTKDQEALG--ITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSA--GVDRGVLALLAEAFTREELPNGEERIVLK 391 (505)
T ss_dssp HHHHCSSTTTTT--CCSCCCCCSCCCSCCCEECSSSCCEECCEEEEEEE--EHHHHHHHHHHHHEEEEECTTSCEEEEEC
T ss_pred cchhhccccccc--eeeeecccccceeEEEEEcCCCCeeecceEEEEee--EHHHHHHHHHHHHhhhccccccccccccc
Confidence 10000 112212 1334566777899999998877654 786666664 6999999999875 22 5
Q ss_pred CCCCCCCceEEEEecCh---hhHHHHHHHHHHHHhCC-CeEEEeCCCCHHHHHHHHHHcCCCEEEEECccccc-------
Q 046808 549 FPLWLSPIQARVLPVTD---TQLEYCNEVIKKLKTNG-IRAEICHGERLPKLIRNAEKQKIPLMAVVGAKEVD------- 617 (653)
Q Consensus 549 ~P~~lap~~v~Vi~~~~---~~~~~a~~la~~Lr~~G-i~v~~d~~~~~~kk~~~A~~~gip~~iiiG~~e~~------- 617 (653)
||+|++|+||+|+|+++ +..++|.+|++.||++| ++|.+|+.+++|+|+++|++.|+||+||||++|++
T Consensus 392 ~p~~laP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~~sig~k~~~ad~~g~p~~iivG~~el~~~~~~~~ 471 (505)
T 1ati_A 392 LKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTT 471 (505)
T ss_dssp CCGGGCSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCCSCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCC
T ss_pred CCcccCCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEChHHhhhcccccc
Confidence 99999999999999986 78999999999999999 99999987799999999999999999999999999
Q ss_pred --CCeEEEEECCCCceeeeeHHHHHHHHHHHHh
Q 046808 618 --AQTVTVRSRFGGELGTMKVDDFISRIKSATE 648 (653)
Q Consensus 618 --~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~ 648 (653)
+|+|+||+|++++|..|+++++++.|++.++
T Consensus 472 ~~~g~V~vr~r~t~~q~~v~~~el~~~l~~~l~ 504 (505)
T 1ati_A 472 RLKDTVTVRDRDTMEQIRLHVDELEGFLRERLR 504 (505)
T ss_dssp TTTTEEEEEETTTCCEEEEEHHHHHHHHHHHHC
T ss_pred ccCCEEEEEECCCCceEEEEHHHHHHHHHHHhc
Confidence 9999999999999999999999999987663
No 16
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=5.8e-53 Score=479.97 Aligned_cols=391 Identities=18% Similarity=0.279 Sum_probs=284.3
Q ss_pred hhHhhhcccCccccc-cccc--CcceecCccccHHHHHHHHHHHHHHH-hcCCeEEecCccCchhhhhhcCccccccccc
Q 046808 257 DHRRLGQDLDLFSIQ-DEAG--GGLVFWHPKGSIVRHIIEDFWKKSHI-EHDYDLLYTPHVAKADLWKISGHLDFYRENM 332 (653)
Q Consensus 257 ~h~~l~~~l~l~~~~-~~~~--~G~~~~lP~g~~l~~~I~~~~~~~~~-~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~ 332 (653)
.-..|+++.|++... +.++ +|+|||+|.|++++++|+++|++.+. ..||++|.||+|++.+||++||||+.|.+.|
T Consensus 69 ~~~~l~~r~gf~~~~~eiy~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~d~m 148 (693)
T 2zt5_A 69 KMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFM 148 (693)
T ss_dssp HHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEE
T ss_pred HHHHHHHhCCCcccchhhcCCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhcCCcccccccc
Confidence 345677776764321 2333 89999999999999999999999998 5699999999999999999999999998866
Q ss_pred ceeccc--------------------------------------------------------------------------
Q 046808 333 YDQMNI-------------------------------------------------------------------------- 338 (653)
Q Consensus 333 y~~~d~-------------------------------------------------------------------------- 338 (653)
+++++.
T Consensus 149 ~~~~~~~e~yr~D~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf 228 (693)
T 2zt5_A 149 VKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMF 228 (693)
T ss_dssp EEBSSSCCEEEHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCC
T ss_pred eeeccCCceeeccHhHHHHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheee
Confidence 644221
Q ss_pred -------CCceEEeccCChHHHHHHHHhhhcc-cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHH
Q 046808 339 -------EDELYQLRPMNCPYHILVYQRKLQS-YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIK 410 (653)
Q Consensus 339 -------~~~~l~LrP~~~~~~~~~~~~~~~s-~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~ 410 (653)
+++.++|||+++++++..|++.+.+ |++||+++||+|++||||.++ ++||+|+|||+|+|+|+||.+++..
T Consensus 229 ~t~igp~~~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisP-r~GLlR~REF~q~d~e~F~~p~~~~ 307 (693)
T 2zt5_A 229 KTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISP-RSGLIRVREFTMAEIEHFVDPSEKD 307 (693)
T ss_dssp EEECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSC-CSGGGSCSEEEEEEEEEEECTTCCC
T ss_pred eccccCCCCcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCC-CCCCccceeeEEccceEEeCcchhc
Confidence 4578999999999999999998887 689999999999999999776 7999999999999999999987752
Q ss_pred ------------------------------------------HHHHHHHHHHHHHHHHcCCCeEEEEecCC-cc-cc---
Q 046808 411 ------------------------------------------DEIRAVLDLTEEILLQFGFNKYEVNLSTK-PE-KA--- 443 (653)
Q Consensus 411 ------------------------------------------d~~~e~l~~~~~il~~lGl~~~~v~l~~~-~~-~~--- 443 (653)
+++..++.++.+++..+|++...+++... +. ..
T Consensus 308 ~~~y~~v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya 387 (693)
T 2zt5_A 308 HPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYA 387 (693)
T ss_dssp CTTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTC
T ss_pred chhHHHHHHHHHhhhhhhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccch
Confidence 45667999999999999998655665554 21 11
Q ss_pred -----------cCCchhHH---HHHHHHHHHHHhcCCceE---------------EcCCCcccccceeeE---EEecccC
Q 046808 444 -----------VGGDDIWE---KATSALRDALDDKGWDYQ---------------IDEGGGAFYGPKIDL---KIEDALG 491 (653)
Q Consensus 444 -----------~g~~~~~~---~~~~~l~~~l~~~g~~~~---------------~~~~~~~~~g~~~d~---~~~d~~g 491 (653)
.|..++|. +....|...+...|.++. ++++++++ |+++.. .+.|.++
T Consensus 388 ~~~~d~e~~~~~g~~e~~~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~-g~~i~~~Ap~i~d~L~ 466 (693)
T 2zt5_A 388 CDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAI-GKAYKKDAKLVMEYLA 466 (693)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC------------------------------------
T ss_pred hhhhhehhhccCChHHHHHHHHHHHHHHHHHHHHhccchhhhcccCcccceeeeeecCChHHH-HHHHHhcccHHHHHhh
Confidence 12112221 111234444444444433 22344455 665542 3344444
Q ss_pred Ccccc------------c--ceEEE---ecCCc-ccccE-E-ECCCCCcccCEEEEecccCchHHHHHHHHHh-h-----
Q 046808 492 RKWQC------------S--TIQVD---FNLPQ-RFDIV-Y-VDSNSEKKRPIMIHRAVLGSLERFFGVLIEH-Y----- 545 (653)
Q Consensus 492 ~~~~~------------~--~i~~d---~~~~~-r~d~~-~-~~~~g~~~~p~~g~~~i~GgieRli~~L~e~-~----- 545 (653)
..+++ + ++++| |.++. ++++. | ....|++..|+|+++|+ |++|++++|+|+ +
T Consensus 467 ~~~~~~~~~l~~~L~~~g~i~i~vdGt~Fei~~~~~~~~~y~~~~~Ggry~P~Vi~~s~--GigRli~aLie~~~~~~~~ 544 (693)
T 2zt5_A 467 ICDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSF--GLGRIMYTVFEHTFHVREG 544 (693)
T ss_dssp ---------------------------------------------CCEEECCEEEEEEE--EHHHHHHHHHHHHEEECSS
T ss_pred hhhHHHHHHHHHHHHhcCCEEEEECCEEEEecccccceeeEEeccCCcEecCcceeCee--hHHHHHHHHHHHhcccccc
Confidence 43321 1 12233 44432 22221 2 23357777899977774 599999999887 2
Q ss_pred -----cCCCCCCCCCceEEEEecChh--hHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccc-
Q 046808 546 -----AGDFPLWLSPIQARVLPVTDT--QLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEV- 616 (653)
Q Consensus 546 -----~~~~P~~lap~~v~Vi~~~~~--~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~- 616 (653)
++.||+|++|+||+|+|++++ ..++|.+|++.||++|++|.+|+ ++++|+|+++|++.|+||+||||++|+
T Consensus 545 ~~~r~g~~~P~~lAP~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~~sigkk~k~Ad~~G~p~~IiIG~~El~ 624 (693)
T 2zt5_A 545 DEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVN 624 (693)
T ss_dssp TTCCEEECCCTTTSSCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCCSCHHHHHHHHHHTTCCEEEEECHHHHT
T ss_pred ccccccccCCCCCCCCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhh
Confidence 247999999999999999864 88999999999999999999999 899999999999999999999999999
Q ss_pred -cCCeEEEEECCCCceeeeeHHHHHHHHHHHHhhhc
Q 046808 617 -DAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 651 (653)
Q Consensus 617 -~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~~~ 651 (653)
++|+|+||+|++++|..++++++++.|++.+.++.
T Consensus 625 ~~~g~Vtvr~r~t~eq~~v~l~el~~~l~~~l~~~~ 660 (693)
T 2zt5_A 625 KTPHTATLRDRDSMRQIRAEISELPSIVQDLANGNI 660 (693)
T ss_dssp SSSCEEEEEETTTCCEEEEETTTHHHHHHHHHTTSS
T ss_pred ccCCEEEEEECCCCceEEEeHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999998887653
No 17
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=3.3e-51 Score=447.33 Aligned_cols=354 Identities=19% Similarity=0.223 Sum_probs=282.9
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhc-Cc-ccccccccceecccCCceEEeccCCh
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKIS-GH-LDFYRENMYDQMNIEDELYQLRPMNC 350 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~s-g~-~~~~~~~~y~~~d~~~~~l~LrP~~~ 350 (653)
..++|++||+|.+++++++|++.++++|.++||++|.||+|++.++|.++ |+ |+.+.++||+|.|++|+.++|||+.|
T Consensus 4 ~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t 83 (421)
T 1h4v_B 4 RAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGT 83 (421)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcch
Confidence 35799999999999999999999999999999999999999999999998 77 88899999999999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 351 PYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 351 ~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
+++++++..+..+++++|+|+||+|+|||+|+|+ .| |+|||+|+|+|+||.+++.+| +|++.++.++|++||++
T Consensus 84 ~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~--~g--R~REf~Q~g~e~~g~~~~~ad--~e~i~~~~~~l~~lgl~ 157 (421)
T 1h4v_B 84 AAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQ--KG--RYRQFHQVNYEALGSENPILD--AEAVVLLYECLKELGLR 157 (421)
T ss_pred HHHHHHHHhccccccCCCeEEEEecCeecCCCCC--CC--CcccEEEccEEEECCCChhhh--HHHHHHHHHHHHHcCCC
Confidence 9999999876557789999999999999999887 88 999999999999999988777 59999999999999998
Q ss_pred eEEEEecCCcc------------cccC------CchhHHHHH--------------------------------------
Q 046808 431 KYEVNLSTKPE------------KAVG------GDDIWEKAT-------------------------------------- 454 (653)
Q Consensus 431 ~~~v~l~~~~~------------~~~g------~~~~~~~~~-------------------------------------- 454 (653)
++.+.+|+... ..+. .++.|+...
T Consensus 158 ~~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~l 237 (421)
T 1h4v_B 158 RLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHL 237 (421)
T ss_pred ceEEEEcCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcchHhhhcccHHHHHHHHhcChHHHHHHhhHHHHHHH
Confidence 89999998531 0000 011111000
Q ss_pred HHHHHHHHhcCCceEEcCCC--c-ccc-cceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecc
Q 046808 455 SALRDALDDKGWDYQIDEGG--G-AFY-GPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAV 530 (653)
Q Consensus 455 ~~l~~~l~~~g~~~~~~~~~--~-~~~-g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i 530 (653)
..+.+.|+..|+.+.+|.+. + .|| |..++.. .+..|. ++ ++ ..|+|||-.. ...|++..|+|| +|+
T Consensus 238 ~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~-~~~~g~--~~-~v----~~GGRYd~l~-~~fgg~~~pa~G-f~i 307 (421)
T 1h4v_B 238 KEVERHLERLSVPYELEPALVRGLDYYVRTAFEVH-HEEIGA--QS-AL----GGGGRYDGLS-ELLGGPRVPGVG-FAF 307 (421)
T ss_pred HHHHHHHHHcCCeEEEecccccchhhhcCeEEEEE-ecCCCC--cC-cc----ccCCcHHHHH-HHhCCCCCCeEE-Eee
Confidence 00111122234444444331 1 344 2222221 111111 00 11 3467887321 223455789998 576
Q ss_pred cCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEE
Q 046808 531 LGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMA 609 (653)
Q Consensus 531 ~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~i 609 (653)
|++|++++|.++ +.+|+|.+|.+|+|+|++++..+.|.+++++||++ ++|++|+ ++++++|+++|++.|+|++|
T Consensus 308 --gieRl~~~l~e~--~~~~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~-i~v~~d~~~~~~~~~~~~a~~~g~p~~i 382 (421)
T 1h4v_B 308 --GVERVALALEAE--GFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPR-LRAEYALAPRKPAKGLEEALKRGAAFAG 382 (421)
T ss_pred --cHHHHHHHHHhc--CcCCCCCCCCeEEEEECChHHHHHHHHHHHHHHhc-CEEEEecCCCCHHHHHHHHHhCCCCEEE
Confidence 799999999886 45566779999999999988889999999999999 9999999 89999999999999999999
Q ss_pred EECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHH
Q 046808 610 VVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSAT 647 (653)
Q Consensus 610 iiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~ 647 (653)
|||++|+++|+|+||+|.+++|..++++++++.+++.+
T Consensus 383 ivG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 383 FLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420 (421)
T ss_pred EECchHhhcCcEEEEECCCCCceEECHHHHHHHHHHhh
Confidence 99999999999999999999999999999999988764
No 18
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=3.6e-51 Score=447.30 Aligned_cols=354 Identities=19% Similarity=0.246 Sum_probs=280.5
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhc-Cc-ccccccccceecccCCceEEeccCCh
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKIS-GH-LDFYRENMYDQMNIEDELYQLRPMNC 350 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~s-g~-~~~~~~~~y~~~d~~~~~l~LrP~~~ 350 (653)
..++|++||+|.+++++++|++.++++|.++||++|.||+|++.++|.++ |+ |+.+.++||+|.|++|+.++|||+.|
T Consensus 5 ~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t 84 (423)
T 1htt_A 5 QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGT 84 (423)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSH
T ss_pred CCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCch
Confidence 36799999999999999999999999999999999999999999999998 77 78889999999999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCC-
Q 046808 351 PYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGF- 429 (653)
Q Consensus 351 ~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl- 429 (653)
+++++++..+ .+++++|+|+||+|+|||+|+|+ .| |+|||+|+|+|+||.+++.+| +|++.++.++|++||+
T Consensus 85 ~~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e~p~--~g--R~Ref~Q~d~e~~g~~~~~ad--~e~i~~~~~~l~~lgl~ 157 (423)
T 1htt_A 85 AGCVRAGIEH-GLLYNQEQRLWYIGPMFRHERPQ--KG--RYRQFHQLGCEVFGLQGPDID--AELIMLTARWWRALGIS 157 (423)
T ss_dssp HHHHHHHHHH-TCSTTCCEEEEEEEEEECCCCCC--SS--CCSEEEEEEEEEESCCSHHHH--HHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHhc-ccccCCCeEEEEEcCEecCCCCC--CC--ccceeEEeeEEEECCCCchhh--HHHHHHHHHHHHHCCCC
Confidence 9999998765 35778999999999999999887 88 999999999999999988777 5999999999999999
Q ss_pred CeEEEEecCCcc------------cccCC--chhHHHHH----------------------------------------H
Q 046808 430 NKYEVNLSTKPE------------KAVGG--DDIWEKAT----------------------------------------S 455 (653)
Q Consensus 430 ~~~~v~l~~~~~------------~~~g~--~~~~~~~~----------------------------------------~ 455 (653)
+++.+.+|+.+. ..++. +..|+... .
T Consensus 158 ~~~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~l~~~~~l~~~l~~~~~~~l~ 237 (423)
T 1htt_A 158 EHVTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFA 237 (423)
T ss_dssp GGCEEEEEECCCHHHHHHC---------------------------------------------------CCHHHHHHHH
T ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHHHHHhccCHHHHHHHHhchhHhhhcccHHHHHHHhcchHHHhhhhHHHHHHHH
Confidence 789999998531 11110 00111000 0
Q ss_pred HHHHHHHhcCCceEEcCCC---cccc-cceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEeccc
Q 046808 456 ALRDALDDKGWDYQIDEGG---GAFY-GPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVL 531 (653)
Q Consensus 456 ~l~~~l~~~g~~~~~~~~~---~~~~-g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~ 531 (653)
.+.+.|+..|+.+.+|.+. -.|| |..++.. .+..|. + .++ ..|+|||-.. ...|++..|++| +|+
T Consensus 238 ~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~-~~~~g~--~-~~v----~~GGRYD~l~-~~fgg~~~pavG-f~i- 306 (423)
T 1htt_A 238 GLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWV-TNSLGS--Q-GTV----CAGGRYDGLV-EQLGGRATPAVG-FAM- 306 (423)
T ss_dssp HHHHHHHTTTCCCEECTTCCCSSTTCCSEEEEEE-CC------C-CEE----EEEEECTTHH-HHTTSCCCCEEE-EEE-
T ss_pred HHHHHHHHcCCeEEEccccccchHHHcCceEEEE-eCCCCC--c-CCc----CCCccHHHHH-HHhCCCCCCeEE-EEe-
Confidence 1112223344444554431 1344 2222221 111111 0 011 2357887321 223446679998 586
Q ss_pred CchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhC--CCeEEEeC-CCCHHHHHHHHHHcCCCEE
Q 046808 532 GSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTN--GIRAEICH-GERLPKLIRNAEKQKIPLM 608 (653)
Q Consensus 532 GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~--Gi~v~~d~-~~~~~kk~~~A~~~gip~~ 608 (653)
|++|++++|.++ +.+|+|.+|.+|+|+|++++..+.|.+++++||++ |++|++|+ +.++++|+++|++.|+|++
T Consensus 307 -gveRl~~~l~e~--~~~~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~~~Gi~v~~d~~~~~~~~~~~~a~~~g~p~~ 383 (423)
T 1htt_A 307 -GLERLVLLVQAV--NPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQFARADKWGARVA 383 (423)
T ss_dssp -EHHHHHHHHHHH--STTCCCCCSCSEEEEECSTTHHHHHHHHHHHHHHHSTTCCEEECCSCCCHHHHHHHHHHHTCSEE
T ss_pred -cHHHHHHHHHhc--CcCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHcCCCCcEEEEeCCCCCHHHHHHHHHHcCCCEE
Confidence 799999999886 44556679999999999888899999999999999 99999999 8999999999999999999
Q ss_pred EEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHH
Q 046808 609 AVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSAT 647 (653)
Q Consensus 609 iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~ 647 (653)
||||++|+++|+|+||+|.+++|..++++++++.+++.+
T Consensus 384 iiiG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 384 VVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 422 (423)
T ss_dssp EEECHHHHHHTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred EEECchhhhcCeEEEEECCCCCceEEcHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998764
No 19
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=4.6e-51 Score=456.36 Aligned_cols=400 Identities=22% Similarity=0.260 Sum_probs=269.9
Q ss_pred ceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccC------cccccccccCcceecCccccHHHHHHHHHHHHHHH
Q 046808 228 MLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLD------LFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHI 301 (653)
Q Consensus 228 ~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~------l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~ 301 (653)
.+.+.++..++..+..+++.+..++..+. +.++..+++ -|.+ ++++||+||+|.++.+++.|++.++++|+
T Consensus 20 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l--~~P~G~~D~lP~~~~~~~~ie~~i~~~~~ 96 (517)
T 4g85_A 20 ELVKLQGERVRGLKQQKASAELIEEEVAK-LLKLKAQLGPDESKQKFVL--KTPKGTRDYSPRQMAVREKVFDVIIRCFK 96 (517)
T ss_dssp -------------------------------------------CCCCCC--CCCTTCCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccccccCCHHHHHHHHHH-HHHhhhhcCCcccccceee--eCCCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 44555665555555555555555554333 344443332 2333 47899999999999999999999999999
Q ss_pred hcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecC
Q 046808 302 EHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYE 381 (653)
Q Consensus 302 ~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E 381 (653)
+|||++|.||+||+.++|.++.+.+ .++||+|.|++|+.++|||+.|+++++++..+ +.+|+|+||+|+|||+|
T Consensus 97 ~~Gy~eI~tP~lE~~el~~~~~ge~--~~~my~f~D~~g~~l~LRPd~T~~~aR~~~~~----~~~p~k~yyig~vfR~E 170 (517)
T 4g85_A 97 RHGAEVIDTPVFELKETLMGKYGED--SKLIYDLKDQGGELLSLRYDLTVPFARYLAMN----KLTNIKRYHIAKVYRRD 170 (517)
T ss_dssp HHTCEECBCCSEEEHHHHHCC--------CSCBBCCTTSCCEEECSCSHHHHHHHHHHT----TCSCEEEEEEEEEECCC
T ss_pred HCCCeEEECcccCcHHHhhcccCcC--cceeEEEECCCCCEEEeCCcCcHHHHHHHHhC----CCCCceeEEEeceEecc
Confidence 9999999999999999998876554 47899999999999999999988888877643 46899999999999999
Q ss_pred CCCCCCCcceeceeEEcceeeeeCchhH-HHHHHHHHHHHHHHHHHcCCCeEEEEecCCcc-----cccCCchh------
Q 046808 382 LSGSLHGLFRVRGFTQDDAHIFCLEDQI-KDEIRAVLDLTEEILLQFGFNKYEVNLSTKPE-----KAVGGDDI------ 449 (653)
Q Consensus 382 ~~~~~~GL~R~REF~q~d~~ifg~~~~~-~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~-----~~~g~~~~------ 449 (653)
+|+..+| |+|||+|+|+|+||++++. +| +|++.++.++|+.||+.++.+.+|++.. ..+|.++.
T Consensus 171 rp~~~~G--R~ReF~Q~g~ei~G~~~~~~aD--aEvi~l~~~~l~~lgl~~~~i~in~~~~l~~~~~~~~~~~~~~~~~~ 246 (517)
T 4g85_A 171 NPAMTRG--RYREFYQCDFDIAGNFDPMIPD--AECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTIC 246 (517)
T ss_dssp C---------CCEEEEEEEEEESCCCTTHHH--HHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CcccccC--ccceeeeeceeccCCccchHHH--HHHHHHHHHHHHhhcCCcccccccchhhHHHHHHhhcchHHHHHHHH
Confidence 9864478 9999999999999988764 56 5999999999999999999999998542 11221111
Q ss_pred ----------HHHHH----------------------------------------------------HHHHHHHHhcCCc
Q 046808 450 ----------WEKAT----------------------------------------------------SALRDALDDKGWD 467 (653)
Q Consensus 450 ----------~~~~~----------------------------------------------------~~l~~~l~~~g~~ 467 (653)
|+... ..+.+.|+..|++
T Consensus 247 ~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~ 326 (517)
T 4g85_A 247 SSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGID 326 (517)
T ss_dssp HHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHHHHHHHHHCHHHHTCHHHHHHHHHHHHHHHHHHHHTCG
T ss_pred HHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 10000 0111223334443
Q ss_pred --eEEcCC--Cc-cccc-ceeeEEEecccCC-----cccccceEEEecCCccccc--EEECCCCCcccCEEEEecccCch
Q 046808 468 --YQIDEG--GG-AFYG-PKIDLKIEDALGR-----KWQCSTIQVDFNLPQRFDI--VYVDSNSEKKRPIMIHRAVLGSL 534 (653)
Q Consensus 468 --~~~~~~--~~-~~~g-~~~d~~~~d~~g~-----~~~~~~i~~d~~~~~r~d~--~~~~~~g~~~~p~~g~~~i~Ggi 534 (653)
+.++++ .+ +||+ ..+++...+ .+. ....+++ ..|||||- ...+. |+...|++|+ ++ |+
T Consensus 327 ~~i~~d~~lvrgldYYtG~vFE~~~~~-~~~~~~~~~~~~~~i----~~GGRYD~Lv~~f~~-~G~~~pavGf-a~--gi 397 (517)
T 4g85_A 327 DKISFDLSLARGLDYYTGVIYEAVLLQ-TPAQAGEEPLGVGSV----AAGGRYDGLVGMFDP-KGRKVPCVGL-SI--GV 397 (517)
T ss_dssp GGEEECTTCCCCTTTCSSEEEEEEEC--------------CCS----EEEEECHHHHHTTSS-SCCCCCEEEE-EE--CH
T ss_pred cceeeccccccCCcccCCeEEEEEECC-cccccccCCccccee----cCCCchhHHHHHhcc-CCCCCCcccc-cc--hH
Confidence 334443 22 4553 333332211 110 0011112 34689982 22222 3567899996 65 69
Q ss_pred HHHHHHHHHhhc-CCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC--CCCHHHHHHHHHHcCCCEEEEE
Q 046808 535 ERFFGVLIEHYA-GDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH--GERLPKLIRNAEKQKIPLMAVV 611 (653)
Q Consensus 535 eRli~~L~e~~~-~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~--~~~~~kk~~~A~~~gip~~iii 611 (653)
+|++.+|.++.. ..+|.+.+|.+|+|++.+++...+|.++++.||++||+|++|+ +.++++|+++|++.||||+|||
T Consensus 398 erl~~~le~~~~~~~~~~~~~~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~vii 477 (517)
T 4g85_A 398 ERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAII 477 (517)
T ss_dssp HHHHHHHHHHHHHTTCCCCSCCCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEECSSSSCCHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHhccccCccccCCCCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEE
Confidence 999988866533 2456667889999999999999999999999999999999987 5689999999999999999999
Q ss_pred CcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHhh
Q 046808 612 GAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATEN 649 (653)
Q Consensus 612 G~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~ 649 (653)
|++|+++|+|+||++.+|+|.+|+++++++.|++.+.+
T Consensus 478 G~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~~ 515 (517)
T 4g85_A 478 GEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 515 (517)
T ss_dssp CHHHHHTTEEEEEETTTCCEEEEEHHHHHHHHHHHCC-
T ss_pred CChhHhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988754
No 20
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=3e-51 Score=448.90 Aligned_cols=348 Identities=19% Similarity=0.237 Sum_probs=275.7
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhc-CcccccccccceecccCCceEEeccCChH
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKIS-GHLDFYRENMYDQMNIEDELYQLRPMNCP 351 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~s-g~~~~~~~~~y~~~d~~~~~l~LrP~~~~ 351 (653)
..++|++||+|.+++++++|++.++++|.++||++|.||+|++.++|.++ |+ .+.++||+|.|++|+.++|||+.|+
T Consensus 7 ~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~~D~~g~~l~LrPd~t~ 84 (434)
T 1wu7_A 7 EKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSFVDKGGREVTLIPEATP 84 (434)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEEECTTSCEEEECSCSHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCC--ccccceEEEECCCCCEEEeCCCChH
Confidence 46899999999999999999999999999999999999999999999984 66 5689999999999999999999999
Q ss_pred HHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCe
Q 046808 352 YHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNK 431 (653)
Q Consensus 352 ~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~ 431 (653)
++++++..+ .++ ++|+|+||+|+|||+|+|+ .| |+|||+|+|+|+||.+++.+| +|++.++.++|++||+++
T Consensus 85 ~~aR~~~~~-~~~-~lP~rl~~~g~vfR~erp~--~g--R~REF~Q~d~ei~g~~~~~ad--~E~i~~~~~~l~~lgl~~ 156 (434)
T 1wu7_A 85 STVRMVTSR-KDL-QRPLRWYSFPKVWRYEEPQ--AG--RYREHYQFNADIFGSDSPEAD--AEVIALASSILDRLGLQD 156 (434)
T ss_dssp HHHHHHTTC-TTC-CSSEEEEECCEEECCCCSC--SS--CCSEEEEEEEEEESCCSHHHH--HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHhc-CCC-CCCeEEEEEcCeecCCCCC--CC--CccceEEeeEEEEcCCChHhh--HHHHHHHHHHHHHcCCCC
Confidence 999999877 566 7999999999999999887 88 999999999999999998877 599999999999999976
Q ss_pred -EEEEecCCcc-----cccCCchhHHHHHH--------------------------------------------------
Q 046808 432 -YEVNLSTKPE-----KAVGGDDIWEKATS-------------------------------------------------- 455 (653)
Q Consensus 432 -~~v~l~~~~~-----~~~g~~~~~~~~~~-------------------------------------------------- 455 (653)
+.+.+|++.. ..+| ++.|.....
T Consensus 157 ~~~i~l~~~g~~~~~~~~~g-~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (434)
T 1wu7_A 157 IYEIRINSRKIMEEIIGGMT-SSDPFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITGKS 235 (434)
T ss_dssp SEEEEEEEHHHHHHHHHTTC-SSCHHHHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHHHHHHTTCC
T ss_pred ceEEEECChhhHHHHHHHhC-cHhHHHHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHhhH
Confidence 9999998642 1232 233210000
Q ss_pred --------HHHHHHHhcCCc-eEEcCCC---cccc-cceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCccc
Q 046808 456 --------ALRDALDDKGWD-YQIDEGG---GAFY-GPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKR 522 (653)
Q Consensus 456 --------~l~~~l~~~g~~-~~~~~~~---~~~~-g~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~ 522 (653)
.+.+.|...|++ +.+|.+. -.|| |..++... ..|. . .++ ..|+|||-.. ...|++..
T Consensus 236 ~~~~~~l~~~~~~l~~~g~~~i~~D~~l~rgldYYtg~vFe~~~--~~g~--~-~~v----~~GGRYD~li-~~fgg~~~ 305 (434)
T 1wu7_A 236 SEEIARMAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFEAYD--RSGQ--F-RAI----LGGGRYDNLA-SLMSGESV 305 (434)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEECTTCCTTTTTCSSEEEEEEE--TTSS--C-SCS----SEEEECTTHH-HHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCCcccCccccCCeEEEEEE--CCCC--c-Cee----eecccHHHHH-HHhCCCCC
Confidence 000111122333 3333321 1233 22222111 0010 0 011 1245666110 11223567
Q ss_pred CEEEEecccCchHHHHHHHHHhhcCCC-CCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHH
Q 046808 523 PIMIHRAVLGSLERFFGVLIEHYAGDF-PLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNA 600 (653)
Q Consensus 523 p~~g~~~i~GgieRli~~L~e~~~~~~-P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A 600 (653)
|+|| +|+ |++|++++|.++ +.| |. +|.+|+|+|++++..++|.+++++||++|++|++|+ ++++++|+++|
T Consensus 306 pa~G-f~i--gveRl~~~l~e~--~~~~p~--~p~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a 378 (434)
T 1wu7_A 306 PAVG-FGM--GDAVISLLLKRE--NVQIPR--EKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQLKYA 378 (434)
T ss_dssp CEEE-EEE--EHHHHHHHHHHT--TCCCCC--SSCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSCCCHHHHHHHH
T ss_pred CeEE-EEE--cHHHHHHHHHhc--CCccCC--CCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHH
Confidence 9999 586 799999999887 467 76 789999999988888999999999999999999999 89999999999
Q ss_pred HHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHh
Q 046808 601 EKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATE 648 (653)
Q Consensus 601 ~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~ 648 (653)
++.|+|++||||++|+++|+|+||+|.++++..++++++++.+++.+.
T Consensus 379 ~~~g~~~~iiiG~~e~~~g~v~vk~~~~~~~~~v~~~el~~~l~~~~~ 426 (434)
T 1wu7_A 379 SAIGADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQAT 426 (434)
T ss_dssp HHTTCSEEEEEEHHHHHTTEEEEEETTTCCEEEEEGGGHHHHHHHCCC
T ss_pred HHCCCCEEEEECchhhhcCeEEEEECCCCCeEEEcHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999987664
No 21
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=4.1e-50 Score=441.85 Aligned_cols=348 Identities=19% Similarity=0.250 Sum_probs=271.9
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccc-cceeccc---C---------
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYREN-MYDQMNI---E--------- 339 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~-~y~~~d~---~--------- 339 (653)
..++|++||+|.++.+++.|++.++++|++|||++|.||+||+.++|.++| +. .++ ||+|.|+ +
T Consensus 13 ~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G--~~-~ke~m~~~~d~~~~g~~~~~~~~~ 89 (465)
T 3net_A 13 STPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG--NQ-GDNIIYGLEPILPPNRQAEKDKSG 89 (465)
T ss_dssp SCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGG--CC---CBEEEEEEEC------------
T ss_pred cCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccC--CC-CccceEEEeccccccccccccccc
Confidence 568999999999999999999999999999999999999999999999984 44 467 9999998 3
Q ss_pred ---CceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHH--HHHH
Q 046808 340 ---DELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIK--DEIR 414 (653)
Q Consensus 340 ---~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~--d~~~ 414 (653)
|+.++|||+.|+++++++..+. .+.++|+|+||+|+|||+|+|| +| |+|||+|+|+|+||.+++.+ | +
T Consensus 90 ~~~g~~l~LRpd~T~~~aR~~~~~~-~~~~~p~r~~y~g~vfR~e~~~--~g--r~Ref~Q~g~ei~G~~~~~a~~D--a 162 (465)
T 3net_A 90 DTGSEARALKFDQTVPLAAYIARHL-NDLTFPFARYQMDVVFRGERAK--DG--RFRQFRQCDIDVVGREKLSLLYD--A 162 (465)
T ss_dssp ----CCEEECSCSHHHHHHHHHHHG-GGSCSSEEEEECCEEECBC----------CCEEEEEEEEEECSSCCCHHHH--H
T ss_pred CCCCCEEEeCCCChHHHHHHHHhcc-cccCCCeEEEEeccEEecCCCC--CC--CcceeEEeeEEEECCCCccchhh--H
Confidence 8999999999999999998775 4567999999999999999998 89 99999999999999998888 8 5
Q ss_pred HHHHHHHHHHHHcCCCeEEEEecCCcc-----cccCCchhHHHHH-----------------------------------
Q 046808 415 AVLDLTEEILLQFGFNKYEVNLSTKPE-----KAVGGDDIWEKAT----------------------------------- 454 (653)
Q Consensus 415 e~l~~~~~il~~lGl~~~~v~l~~~~~-----~~~g~~~~~~~~~----------------------------------- 454 (653)
|++.++.++|+.||++++.+.+||+.+ ..+|.++.|....
T Consensus 163 Evi~l~~~~l~~lgl~~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l 242 (465)
T 3net_A 163 QMPAIITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDF 242 (465)
T ss_dssp HHHHHHHHHHHHHTCSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999999999999999999998653 2344433211000
Q ss_pred -----------HHHHHH---------------------HHhc-CCc----eEEcCCC--c-ccc-cceeeEEEecccCCc
Q 046808 455 -----------SALRDA---------------------LDDK-GWD----YQIDEGG--G-AFY-GPKIDLKIEDALGRK 493 (653)
Q Consensus 455 -----------~~l~~~---------------------l~~~-g~~----~~~~~~~--~-~~~-g~~~d~~~~d~~g~~ 493 (653)
..+.+. |+.. .-. +.+|++. + +|| |..|++...+ .|.
T Consensus 243 ~~~~g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~~~~~D~~lvrgldYYtG~vFe~~~~~-~~~- 320 (465)
T 3net_A 243 VKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIG-HEA- 320 (465)
T ss_dssp HTCCSCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHTTCCGGGEEECTTCCCCSSSEEEEEEEEEETT-CGG-
T ss_pred HHhcCChHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHhcccccCceEEEccCccCCCcccCceEEEEEECC-CCc-
Confidence 000000 1111 113 4555431 2 355 3333332211 110
Q ss_pred ccccceEEEecCCcccccEEEC--CCCCcccCEEEEecccCchHHHHHHHHHhhcCCCCC-CCCCceEEEEecChhhHHH
Q 046808 494 WQCSTIQVDFNLPQRFDIVYVD--SNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPL-WLSPIQARVLPVTDTQLEY 570 (653)
Q Consensus 494 ~~~~~i~~d~~~~~r~d~~~~~--~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~~~P~-~lap~~v~Vi~~~~~~~~~ 570 (653)
.++| ..|||||-.. . . |+. .|++|+ |+ |+||++.+|.++ +.||. |.+|.+|+|++++++...+
T Consensus 321 --~~~i----~~GGRYD~L~-~~f~-g~~-~pavGf-ai--GieRli~~L~e~--g~~p~~~~~p~~V~Vi~~~~~~~~~ 386 (465)
T 3net_A 321 --LGSI----CSGGRYEELV-GTFI-GEK-MPGVGI-SI--GLTRLISRLLKA--GILNTLPPTPAQVVVVNMQDELMPT 386 (465)
T ss_dssp --GCCS----SEEEEESSSS-GGGT-CSC-CCEEEE-EE--EHHHHHHHHHHT--TSSCCCCSCSCCEEECCSCGGGHHH
T ss_pred --ccee----cccccHHHHh-hhhc-CCC-Cceeee-ec--cHHHHHHHHHHc--CCCCCcCCCCCeEEEEEcCHHHHHH
Confidence 0122 3468888321 2 2 555 899996 76 799999999887 56897 8999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCCEEEEECcccccCC-eEEEEECCCCceeeeeHHHHHHHHHHHH
Q 046808 571 CNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQ-TVTVRSRFGGELGTMKVDDFISRIKSAT 647 (653)
Q Consensus 571 a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~~-~V~vk~~~~~~q~~v~~~el~~~i~~~~ 647 (653)
|.+++++||++|++|++|+ +.++++|+++|++.|+|++||||++ +++| +|+||+|.+++|..++++++++.|++.+
T Consensus 387 A~~la~~LR~~Gi~ve~d~~~~sl~~q~k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~~t~eq~~v~~~el~~~l~~~l 464 (465)
T 3net_A 387 YLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGAD-EAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465)
T ss_dssp HHHHHHHHHHTTCCEEECCSCCCHHHHHHHHHHHTCCEEEECCHH-HHHTTCCEEEETTTTEEEECC-CCHHHHHHHTC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCEEEEECch-hhcCCEEEEEECCCCceEEeeHHHHHHHHHHhc
Confidence 9999999999999999999 8999999999999999999999999 9999 9999999999999999999999988754
No 22
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=100.00 E-value=2.1e-51 Score=447.38 Aligned_cols=375 Identities=13% Similarity=0.088 Sum_probs=280.7
Q ss_pred eecccccccHHHHHHhhhhhHHhhhchhHhhhcccCccccc-cccc-----Ccce-ecCccccHHHHHHHHHHHHHH--H
Q 046808 231 RIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQ-DEAG-----GGLV-FWHPKGSIVRHIIEDFWKKSH--I 301 (653)
Q Consensus 231 Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~-~~~~-----~G~~-~~lP~g~~l~~~I~~~~~~~~--~ 301 (653)
+.-++++|+.+++.. ....+..|+++.|+|... +.++ +|++ +|+|.|+.++++|+++|++.+ .
T Consensus 8 ~~~~~~~~~~~~~~~--------~~~~~~~l~krrgf~~~s~eiy~g~~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~~ 79 (454)
T 1g5h_A 8 PADGTQQPDAPEHAV--------AREALVDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSMVVF 79 (454)
T ss_dssp -------------------------CHHHHHHHHTTSBCCCGGGGSHHHHHHCCSCCBCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCChhHHHH--------HHHHHHHHHHHcCCccccchhcccCCCCCcceeeeCchHHHHHHHHHHHHHHHHhhh
Confidence 444566676665432 133467788887875432 3332 2766 999999999999999999885 5
Q ss_pred hcCCeEEecCccCchhhhhhc--Cc---ccccccc----------cceec-ccCCceEEeccCChHHHHHHHHhhhcccC
Q 046808 302 EHDYDLLYTPHVAKADLWKIS--GH---LDFYREN----------MYDQM-NIEDELYQLRPMNCPYHILVYQRKLQSYR 365 (653)
Q Consensus 302 ~~G~~~I~tP~le~~~l~~~s--g~---~~~~~~~----------~y~~~-d~~~~~l~LrP~~~~~~~~~~~~~~~s~~ 365 (653)
+.||.+|.||++.+.++|+++ || +|.+.++ ||... +..++.++||||||++++..|++.+++++
T Consensus 80 ~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRPeta~g~~~~f~~~~~s~r 159 (454)
T 1g5h_A 80 REQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRATLLHGALEHYVNCLDLVN 159 (454)
T ss_dssp CTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECSCSHHHHHHTHHHHHHHTT
T ss_pred cCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecccccHHHHHHHhhhHhhcc
Confidence 899999999999999999987 77 8887654 54431 22356899999999999999999998888
Q ss_pred -CCCcEEEEeeeeee---cCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcc
Q 046808 366 -DFPIRVAELGTVYR---YELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPE 441 (653)
Q Consensus 366 -~lP~rl~~~g~~fR---~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~ 441 (653)
+||++++|+|+||| ||.++ ++||+|+|||+|.|+|+||.++++.+++..++..+.++++.||++...++...
T Consensus 160 ~~LP~~~aqig~~fR~~~nE~s~-~~Gl~R~REF~q~E~~~F~~pe~~~e~~~~~~~~~~~~~~~lgi~~~~~r~~~--- 235 (454)
T 1g5h_A 160 RKLPFGLAQIGVCFHPVSNSNQT-PSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSAD--- 235 (454)
T ss_dssp TBSCEEEEEEEEEEEEEC----------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCSSGGGEEEEE---
T ss_pred cCCCEEEEEeeeeccCCcccccC-CCCccccCceehhheEEEeCHhhHHHHHHHHHHHHHHHHHHcCCCceeEEecC---
Confidence 99999999999999 69987 79999999999999999999999999999999999999999999754444332
Q ss_pred cccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccccceEEEecC-----CcccccEEECC
Q 046808 442 KAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNL-----PQRFDIVYVDS 516 (653)
Q Consensus 442 ~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~-----~~r~d~~~~~~ 516 (653)
.|+.. ++...+++|....+.++++|. .+. .||++ +.|+++.|.+.
T Consensus 236 -------~~~~~------a~~~~~ie~~~p~g~~e~~g~----------------~~~-td~~l~~~~~~s~~~l~y~d~ 285 (454)
T 1g5h_A 236 -------CQDEL------GRKGSKLYYSFPWGKEPIETL----------------WNL-GDQELLHTYPGNVSTIQGRDG 285 (454)
T ss_dssp -------EECTT------SCEEEEEEEEETTEEEEEEEE----------------EEE-ESHHHHHHSTTCGGGSCEEET
T ss_pred -------CHHHH------HhcCCCcEEecCCCceEEEEe----------------cCC-CHHHHHhccCCceeeEEEECC
Confidence 12110 112223334443333333331 111 23333 46789999874
Q ss_pred CCCcccCEEEEecccCchHHHHHHHHHhh-c--------C--------CCCCCCCCceEEEE-ecC--hhhHHHHHHHHH
Q 046808 517 NSEKKRPIMIHRAVLGSLERFFGVLIEHY-A--------G--------DFPLWLSPIQARVL-PVT--DTQLEYCNEVIK 576 (653)
Q Consensus 517 ~g~~~~p~~g~~~i~GgieRli~~L~e~~-~--------~--------~~P~~lap~~v~Vi-~~~--~~~~~~a~~la~ 576 (653)
+++..|+|+++++ |++|++.++++++ . + .||+|+||+||+|+ +.+ ++..++|.+|++
T Consensus 286 -~~~~~P~vi~~s~--Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~~~~~A~~l~~ 362 (454)
T 1g5h_A 286 -RKNVVPCVLSVSG--DVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLN 362 (454)
T ss_dssp -TEEECCEEEEEEE--EHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHH
T ss_pred -CCcEeeEEEeCcc--cHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHHHHHHHHHHHH
Confidence 4467899999874 7999986666654 2 2 89999999999999 876 778999999999
Q ss_pred HHHhCCCeEE--EeC--CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHhhh
Q 046808 577 KLKTNGIRAE--ICH--GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 650 (653)
Q Consensus 577 ~Lr~~Gi~v~--~d~--~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~~ 650 (653)
+||++|++|+ +|+ ++++|+|+++|++.|+||+||||++|+++|+|+||+|++++|..++++++++.|++.+++.
T Consensus 363 ~Lr~~Gi~v~~~~Ddr~~~sigkk~r~Ad~~GiP~~IiVG~~Ele~g~VtvR~r~t~eq~~v~l~el~~~l~~~l~~~ 440 (454)
T 1g5h_A 363 ELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASA 440 (454)
T ss_dssp HHHHTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSHHHHHHHHHHHH
T ss_pred HHHHCCCEEEEEecCCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHhcc
Confidence 9999999996 887 5899999999999999999999999999999999999999999999999999998887654
No 23
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.3e-49 Score=436.09 Aligned_cols=369 Identities=21% Similarity=0.258 Sum_probs=270.9
Q ss_pred hhHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceec
Q 046808 257 DHRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM 336 (653)
Q Consensus 257 ~h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~ 336 (653)
+|...+++ + |.+ ++++|++||+|.++.++++|++.++++|++|||++|.||+||+.++|.++.+.+ .++||+|.
T Consensus 3 ~~~~~~~~-~-~~~--~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~--~~~~y~f~ 76 (464)
T 4g84_A 3 GSEFELRR-Q-FVL--KTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED--SKLIYDLK 76 (464)
T ss_dssp ------------CC--CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC------CCCBBC
T ss_pred chhhhHhh-c-cce--eCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcC--cceeEEEE
Confidence 45655555 2 233 478999999999999999999999999999999999999999999998876554 47899999
Q ss_pred ccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchh-HHHHHHH
Q 046808 337 NIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQ-IKDEIRA 415 (653)
Q Consensus 337 d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~-~~d~~~e 415 (653)
|++|+.++|||+.|+++++++..+ +.+|+|+||+|+|||+|+|+..+| |+|||+|+|+|+||.+++ .+| +|
T Consensus 77 D~~g~~l~LRPd~T~~~aR~~~~~----~~~p~k~~y~g~vfR~erp~~~~g--R~Ref~Q~g~ei~G~~~~~~aD--aE 148 (464)
T 4g84_A 77 DQGGELLSLRYDLTVPFARYLAMN----KLTNIKRYHIAKVYRRDNPAMTRG--RYREFYQCDFDIAGNFDPMIPD--AE 148 (464)
T ss_dssp CCSSCCEEECSCSHHHHHHHHHHT----TCSCEEEEEEEEEECCCC--------CCSEEEEEEEEEESCCSTTHHH--HH
T ss_pred CCCCCEEEeCCcCcHHHHHHHHhc----CCCCceeEEEecceeccCCccccC--ccceeeecceeccCCccchhhH--HH
Confidence 999999999999988888877543 468999999999999998862245 999999999999998776 456 59
Q ss_pred HHHHHHHHHHHcCCCeEEEEecCCcc-----cccCCchh----------------HHHH---------------------
Q 046808 416 VLDLTEEILLQFGFNKYEVNLSTKPE-----KAVGGDDI----------------WEKA--------------------- 453 (653)
Q Consensus 416 ~l~~~~~il~~lGl~~~~v~l~~~~~-----~~~g~~~~----------------~~~~--------------------- 453 (653)
++.++.++|+.||++++.+.+|++.. ..+|..+. |+..
T Consensus 149 vi~l~~~~l~~lgl~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 228 (464)
T 4g84_A 149 CLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDY 228 (464)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcceeecchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 99999999999999999999998531 11111110 0000
Q ss_pred -------------------------------HHHHHHHHHhcCCc--eEEcCC--Cc-cccc-ceeeEEEecccCC----
Q 046808 454 -------------------------------TSALRDALDDKGWD--YQIDEG--GG-AFYG-PKIDLKIEDALGR---- 492 (653)
Q Consensus 454 -------------------------------~~~l~~~l~~~g~~--~~~~~~--~~-~~~g-~~~d~~~~d~~g~---- 492 (653)
...+.+.|+..|++ +.++++ .+ +||+ ..+++...+ .+.
T Consensus 229 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~-~~~~~~~ 307 (464)
T 4g84_A 229 VQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQ-TPAQAGE 307 (464)
T ss_dssp HTCEESHHHHHHHTTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEE-CC-----
T ss_pred HHhcCCchHHHHHHhcccccccHHHHHHHHHHHHHHhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECC-ccccccc
Confidence 01122233444543 334443 22 4553 333332211 110
Q ss_pred -cccccceEEEecCCccccc--EEECCCCCcccCEEEEecccCchHHHHHHHHHhhcCCCC--CCCCCceEEEEecChhh
Q 046808 493 -KWQCSTIQVDFNLPQRFDI--VYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFP--LWLSPIQARVLPVTDTQ 567 (653)
Q Consensus 493 -~~~~~~i~~d~~~~~r~d~--~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~~~P--~~lap~~v~Vi~~~~~~ 567 (653)
.....+ ...|||||- ...+. ++...|++|+ |+ |+||++.+|.++.. .|| .+..+.+|+|++.+++.
T Consensus 308 ~~~~~~~----i~~GGRYD~L~~~~~~-~g~~~pavGf-ai--gieRl~~~l~~~~~-~~~~~~~~~~~~v~v~~~~~~~ 378 (464)
T 4g84_A 308 EPLGVGS----VAAGGRYDGLVGMFDP-KGRKVPCVGL-SI--GVERIFSIVEQRLE-ALEEKIRTTETQVLVASAQKKL 378 (464)
T ss_dssp --EEEEE----EEEEEECCSTGGGTST-TCCCCCEEEE-EE--CHHHHHHHHHHHHH-TTTCCCCSCCCCEEEECSSSSC
T ss_pred CCcccce----eccCCchhHHHHHhcc-CCCCCCCccc-cc--cHHHHHHHHHHhcc-ccCcccccccceEEEEeCCHHH
Confidence 000111 134689982 11122 3467899996 76 69999998877643 333 33457799999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEeC--CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHH
Q 046808 568 LEYCNEVIKKLKTNGIRAEICH--GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKS 645 (653)
Q Consensus 568 ~~~a~~la~~Lr~~Gi~v~~d~--~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~ 645 (653)
..+|.+++++||++||+|++|+ +.++++|+++|++.|+||+||||++|+++|+|+||+|.+|+|.+|+++++++.|++
T Consensus 379 ~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~ 458 (464)
T 4g84_A 379 LEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKR 458 (464)
T ss_dssp HHHHHHHHHHHHHTTCCEECCSCSSCCHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeEEeeHHHHHHHHHH
Confidence 9999999999999999999987 46899999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 046808 646 ATEN 649 (653)
Q Consensus 646 ~~~~ 649 (653)
.+.+
T Consensus 459 ~l~~ 462 (464)
T 4g84_A 459 RTGQ 462 (464)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 8764
No 24
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-50 Score=432.73 Aligned_cols=325 Identities=14% Similarity=0.104 Sum_probs=256.7
Q ss_pred Ccce-ecCccccHHHHHHHHHHHHHHH-hcC-CeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHH
Q 046808 276 GGLV-FWHPKGSIVRHIIEDFWKKSHI-EHD-YDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPY 352 (653)
Q Consensus 276 ~G~~-~~lP~g~~l~~~I~~~~~~~~~-~~G-~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~ 352 (653)
+|.+ +|+|.|+.|+++|++.|++.+. +.| +.+|.||. .++|+.||||+.|. ++||||||++
T Consensus 93 ~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~---~~~~~~SGH~d~~~-------------~~LRPeTaqg 156 (459)
T 3ikl_A 93 SGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALH---HKPGPLLPGDSAFR-------------GGLRENLLHG 156 (459)
T ss_dssp TTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCS---BCCSCCCSSCSCCT-------------TB-CSCSHHH
T ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhccCceEeecccc---ccccccCcchhhhc-------------ceECCCCChh
Confidence 4555 9999999999999997777765 366 77799999 67799999999875 8899999999
Q ss_pred HHHHHHhhhcccC-CCCcEEEEeeeeeecCC--CCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCC
Q 046808 353 HILVYQRKLQSYR-DFPIRVAELGTVYRYEL--SGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGF 429 (653)
Q Consensus 353 ~~~~~~~~~~s~~-~lP~rl~~~g~~fR~E~--~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl 429 (653)
+...|++.+.+++ +||++++|+|+|||+|. .++++||+|+|||+|.|+++|+.|+++.+++..++..+..+++.||+
T Consensus 157 ~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi 236 (459)
T 3ikl_A 157 ALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAM 236 (459)
T ss_dssp HHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999998 99999999999999996 34469999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEecccCCcccccceEEEecCCc--
Q 046808 430 NKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQ-- 507 (653)
Q Consensus 430 ~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d~~g~~~~~~~i~~d~~~~~-- 507 (653)
+...+++...+. ++ +++..+++|....+.++++ .|++. .||++.+
T Consensus 237 ~~~~~r~~~~~~-----ee-----------A~~~~DiE~~~p~G~~E~~----------------g~sn~-tDfqL~~~~ 283 (459)
T 3ikl_A 237 SPSNFSSSDCQD-----EE-----------GRKGNKLYYNFPWGKELIE----------------TLWNL-GDHELLHMY 283 (459)
T ss_dssp SGGGEEEEEECC-----SS-----------SSCEEEEEEECSSCEEEEE----------------EEEEE-ETHHHHHHS
T ss_pred ChhhEEEeecCc-----hH-----------HHhhcCeEEEcCCceEEEe----------------eeecc-chhhhhccc
Confidence 743333332210 00 0111222233322222222 23333 6777632
Q ss_pred -ccccEEECCCC-CcccCEEEEecccCchHHHHHHHHHh-hc----------------CCCCCCCCCceEEEEecC---h
Q 046808 508 -RFDIVYVDSNS-EKKRPIMIHRAVLGSLERFFGVLIEH-YA----------------GDFPLWLSPIQARVLPVT---D 565 (653)
Q Consensus 508 -r~d~~~~~~~g-~~~~p~~g~~~i~GgieRli~~L~e~-~~----------------~~~P~~lap~~v~Vi~~~---~ 565 (653)
+++..|.+.+| ++..|.|+++++ |++|++.+++++ |. ..||+|+||+||.|++.. +
T Consensus 284 ~~~~~~~~~~dg~~k~~P~vi~~s~--Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Iii~~~~~e 361 (459)
T 3ikl_A 284 PGNVSKLHGRDGRKNVVPCVLSVNG--DLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTL 361 (459)
T ss_dssp CSCSSSSCCBSSSCBCCCEEEEEEE--EHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEEESSCCST
T ss_pred cccCceeEccCCCeeeeeEEEEecc--cHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEEeCCCCCH
Confidence 34445556666 457899999875 799988777765 43 589999999999999432 6
Q ss_pred hhHHHHHHHHHHHHhCCCeEE--EeC--CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHHHH
Q 046808 566 TQLEYCNEVIKKLKTNGIRAE--ICH--GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFIS 641 (653)
Q Consensus 566 ~~~~~a~~la~~Lr~~Gi~v~--~d~--~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~ 641 (653)
+..++|.+|+++||++||+|+ +|+ ++++|+||++|+++|+||+||||++|+++|+|+||+|++++|..|+++++++
T Consensus 362 ~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siGkK~r~Ad~iGiPy~IiVG~kEle~g~VtVR~Rdtgeq~~v~ldeli~ 441 (459)
T 3ikl_A 362 ELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKD 441 (459)
T ss_dssp THHHHHHHHHHHHHHTSCCEECGGGSSSCCTTHHHHHHHGGGTCSEEEEECTTSTTSSEEEEEETTTCCCCCEETTHHHH
T ss_pred HHHHHHHHHHHHHHHCCCeEEEeecCCcCCCHHHHHHHHHHcCCCEEEEECchhhhCCEEEEEECCCCceEEEEHHHHHH
Confidence 788999999999999999999 676 4899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 046808 642 RIKSATENRT 651 (653)
Q Consensus 642 ~i~~~~~~~~ 651 (653)
.|++.++..+
T Consensus 442 ~l~~~i~~~~ 451 (459)
T 3ikl_A 442 FLIKYISSAK 451 (459)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcc
Confidence 9999887643
No 25
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=3.5e-49 Score=431.54 Aligned_cols=343 Identities=16% Similarity=0.184 Sum_probs=262.5
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhc-CcccccccccceecccCCceEEeccCChH
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKIS-GHLDFYRENMYDQMNIEDELYQLRPMNCP 351 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~s-g~~~~~~~~~y~~~d~~~~~l~LrP~~~~ 351 (653)
..++|++||+|.++.+++.|++.+++++++|||++|.||+||+.++|.++ |+. +.++||+|.|++|+.++|||+.|+
T Consensus 30 ~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~--~~~~my~f~D~~g~~l~LRpd~T~ 107 (456)
T 3lc0_A 30 EPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEE--ITEQMFNFITKGGHRVALRPEMTP 107 (456)
T ss_dssp SCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH--HHHTCEEEECSSSCEEEECSCSHH
T ss_pred cCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccc--hhhceEEEEcCCCCEEecCCcCHH
Confidence 46899999999999999999999999999999999999999999999986 553 578999999999999999999999
Q ss_pred HHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCC--
Q 046808 352 YHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGF-- 429 (653)
Q Consensus 352 ~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl-- 429 (653)
++++++..+. .+.++|+|+||+|+|||+|+|+ +| |+|||+|+|+|+||.+++..| +|++.++.++|+.||+
T Consensus 108 ~~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~~--~g--R~ReF~Q~g~ei~G~~~~~~D--aEvi~l~~~~l~~lgl~~ 180 (456)
T 3lc0_A 108 SLARLLLGKG-RSLLLPAKWYSIPQCWRYEAIT--RG--RRREHYQWNMDIVGVKSVSAE--VELVCAACWAMRSLGLSS 180 (456)
T ss_dssp HHHHHHHHSC-TTCCSSEEEEECCEEECCCC---------CCEEEEEEEEEESCCSTHHH--HHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcC-cccCCCEEEEEeccEEecCCCC--CC--CccceEEEEEEEEcCCChHhh--HHHHHHHHHHHHHcCCCC
Confidence 9999998765 3568999999999999999988 88 999999999999999998888 5999999999999999
Q ss_pred CeEEEEecCCcc-----cccCCch----------------hHHHH-----------------------------------
Q 046808 430 NKYEVNLSTKPE-----KAVGGDD----------------IWEKA----------------------------------- 453 (653)
Q Consensus 430 ~~~~v~l~~~~~-----~~~g~~~----------------~~~~~----------------------------------- 453 (653)
+++.+.+|++.+ ..+|.++ .|+..
T Consensus 181 ~~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~ 260 (456)
T 3lc0_A 181 KDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGE 260 (456)
T ss_dssp TTEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSHHHHHHHHCT
T ss_pred CceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHHHHHHhH
Confidence 789999999642 1122111 01100
Q ss_pred ----HHHH---HHHHHhcCCc--eEEcCCC--c-cccc-ceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCc
Q 046808 454 ----TSAL---RDALDDKGWD--YQIDEGG--G-AFYG-PKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEK 520 (653)
Q Consensus 454 ----~~~l---~~~l~~~g~~--~~~~~~~--~-~~~g-~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~ 520 (653)
.+.| .+.|+..|++ +.+|++. + +||+ ..|+. ....|.. ++| ..|||||-. ....|+.
T Consensus 261 ~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~--~~~~g~~---~~I----~~GGRYD~L-v~~fg~~ 330 (456)
T 3lc0_A 261 EHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEG--FDREGKF---RAL----CGGGRYDNL-LTTYGSP 330 (456)
T ss_dssp TCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEE--EETTSCS---SCS----EEEEECSSH-HHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEE--EECCCCc---ceE----eecccHHHH-HHHhCCC
Confidence 0111 1233456776 7777752 2 5774 44443 3322321 223 347899831 1334555
Q ss_pred -ccCEEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHH
Q 046808 521 -KRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIR 598 (653)
Q Consensus 521 -~~p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~ 598 (653)
..|++|+ |+ |+|||+.+|.+. +..|....+.+|+|++.+++....|.+++++||++|++|+++. +++++++++
T Consensus 331 ~~~PavGF-ai--g~eRl~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~~~~~slkkq~k 405 (456)
T 3lc0_A 331 TPIPCAGF-GF--GDCVIVELLQEK--RLLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILDKKKVVQAFN 405 (456)
T ss_dssp SCCCEEEE-EE--ESSHHHHHHHHT--TCCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHHTTCCEEECCSCCCHHHHHH
T ss_pred CCCCEEEE-Ee--EHHHHHHHHHhc--CCCCccCCCCcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHH
Confidence 6899997 66 799999988664 3344333457899999998888999999999999999999999 889999999
Q ss_pred HHHHcCCCEEEEECcccccCCeEEEEECCCCceeeeeHHHH
Q 046808 599 NAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDF 639 (653)
Q Consensus 599 ~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el 639 (653)
+|++.|+|+++|||++|+++|+|+||++.+++|.++++++.
T Consensus 406 ~A~k~ga~~vviiGe~E~~~g~v~vK~l~tgeQ~~~~~~~~ 446 (456)
T 3lc0_A 406 YADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAER 446 (456)
T ss_dssp HHHHTTEEEEEEECHHHHHTTEEEEEECC------------
T ss_pred HHHHcCCCEEEEECCchhcCCeEEEEECCCCCeEEeccccc
Confidence 99999999999999999999999999999999999988764
No 26
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=100.00 E-value=6.8e-44 Score=385.21 Aligned_cols=287 Identities=19% Similarity=0.313 Sum_probs=235.7
Q ss_pred CccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCcccccc---cccCcceecCccccHHHHHHHHHHHHHHH
Q 046808 225 KKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQD---EAGGGLVFWHPKGSIVRHIIEDFWKKSHI 301 (653)
Q Consensus 225 k~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~~---~~~~G~~~~lP~g~~l~~~I~~~~~~~~~ 301 (653)
..+...|.+|.+-. ..+.+++|++||+++|+|+|++ .+|+|+++|+|.|++++++|++++++.+.
T Consensus 120 ~~n~~~~~~g~~~~------------~~f~~~~H~~l~~~l~l~d~~~~~~~~g~G~~~~~p~ga~l~~~L~~~~~~~~~ 187 (425)
T 2dq3_A 120 KDNVEVRRWGEPRK------------FDFEPKPHWEIGERLGILDFKRGAKLSGSRFTVIAGWGARLERALINFMLDLHT 187 (425)
T ss_dssp GGCEEEEEESCCCC------------CSSCCCCHHHHHHHTTCEEHHHHHHHHCSSCCEEETHHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEeCCCCC------------CCCCcccHHHHHhhCCeEEecccccccCCCceEECcHHHHHHHHHHHHHHHHHH
Confidence 44456677776311 1245789999999999999863 46899999999999999999999999999
Q ss_pred hcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecC
Q 046808 302 EHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYE 381 (653)
Q Consensus 302 ~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E 381 (653)
++||++|.||+|++.++|.++||++.|.++||++. ++.++||||+|++++.++++++.++++||+|++|+|+|||+|
T Consensus 188 ~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~---~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E 264 (425)
T 2dq3_A 188 KKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE---RDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRRE 264 (425)
T ss_dssp HTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT---TTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCC
T ss_pred HcCCEEEECCccccHHHHHhcCCCCcChhhheEec---CCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCC
Confidence 99999999999999999999999999999999984 578999999999999999999999999999999999999999
Q ss_pred CCC---CCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHH
Q 046808 382 LSG---SLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALR 458 (653)
Q Consensus 382 ~~~---~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~ 458 (653)
.++ .++||+|+|||+|.|+++||.++++.+++++++.++.++|+.|||+...+.+++++ +|..+.
T Consensus 265 ~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~~rvv~l~~gd---lg~~a~--------- 332 (425)
T 2dq3_A 265 AGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGD---LGFSAA--------- 332 (425)
T ss_dssp CSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTT---CCTTCS---------
T ss_pred CCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCc---CCChHH---------
Confidence 975 36899999999999999999999988889999999999999999974447777765 222110
Q ss_pred HHHHhcCCceEEcCCCcccccceeeEEEec----ccCCcccccceEEEecCCcccccEEECCC-CCcccCEEEEecccCc
Q 046808 459 DALDDKGWDYQIDEGGGAFYGPKIDLKIED----ALGRKWQCSTIQVDFNLPQRFDIVYVDSN-SEKKRPIMIHRAVLGS 533 (653)
Q Consensus 459 ~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d----~~g~~~~~~~i~~d~~~~~r~d~~~~~~~-g~~~~p~~g~~~i~Gg 533 (653)
.++|++++. .++...+|+++ +||+ ++|++++|.+.+ |+..++|+.+ |...+
T Consensus 333 ---------------------~~~diE~w~p~~~~~~ei~s~sn~-~Dfq-a~r~~i~y~~~~~~k~~~vHtl~-Gs~~a 388 (425)
T 2dq3_A 333 ---------------------KTYDIEVWFPSQNKYREISSCSNC-EDFQ-ARRMNTRFKDSKTGKNRFVHTLN-GSGLA 388 (425)
T ss_dssp ---------------------EEEEEEEEEGGGTEEEEEEEEEEC-TTHH-HHHHTEEEECTTTCSEEECEEEE-EEEEE
T ss_pred ---------------------hccchhhccchhHHHHHHHHcCCc-cccC-cccCCeEEECCCCCeeEEEEEEe-ccccH
Confidence 112333322 23334578887 8998 699999999877 4555666332 32113
Q ss_pred hHHHHHHHHHhhc---C--CCCCCCCCce-EEEEe
Q 046808 534 LERFFGVLIEHYA---G--DFPLWLSPIQ-ARVLP 562 (653)
Q Consensus 534 ieRli~~L~e~~~---~--~~P~~lap~~-v~Vi~ 562 (653)
++|++++|+|+|+ | .||+||+|++ +-+|+
T Consensus 389 v~R~i~allE~~~~~~G~i~iP~~L~P~~~~~~i~ 423 (425)
T 2dq3_A 389 VGRTLAAILENYQQEDGSVVVPEVLRDYVGTDVIR 423 (425)
T ss_dssp HHHHHHHHHHHTBCTTSCEECCTTTHHHHSCSEEC
T ss_pred HHHHHHHHHHhCCCCCCCEecCccccCccCcccCC
Confidence 9999999999998 5 7999999998 65554
No 27
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00 E-value=2.9e-42 Score=374.28 Aligned_cols=266 Identities=17% Similarity=0.215 Sum_probs=223.7
Q ss_pred hhhchhHhhhcccCccccc---ccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccc
Q 046808 253 AKRRDHRRLGQDLDLFSIQ---DEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYR 329 (653)
Q Consensus 253 akk~~h~~l~~~l~l~~~~---~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~ 329 (653)
+++++|++||+++|+|+|+ +.+|+|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.++||++.|.
T Consensus 157 ~~~~~H~~lg~~l~l~d~~~~~k~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~ 236 (455)
T 2dq0_A 157 WKPKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFE 236 (455)
T ss_dssp SCCCCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHH
T ss_pred CccCCHHHHHhcCCcEEecccccccCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCCh
Confidence 5679999999999999996 4578999999999999999999999999999999999999999999999999999999
Q ss_pred cccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCC---CCCCcceeceeEEcceeeeeCc
Q 046808 330 ENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSG---SLHGLFRVRGFTQDDAHIFCLE 406 (653)
Q Consensus 330 ~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~---~~~GL~R~REF~q~d~~ifg~~ 406 (653)
++||.+. +++++||||+|++++.+|++++.++++||+|++++|+|||+|.++ .++||+|+|||+|.|+++||.+
T Consensus 237 ~emy~~~---d~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~p 313 (455)
T 2dq0_A 237 DVIYKVE---DEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRP 313 (455)
T ss_dssp HTCCBBT---TSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECT
T ss_pred HhhCeec---CCcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCH
Confidence 9999985 368999999999999999999999999999999999999999985 2589999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEE
Q 046808 407 DQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKI 486 (653)
Q Consensus 407 ~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~ 486 (653)
+++.+++.+++.++.++|+.|||+...+.++++. +|... ..++|+++
T Consensus 314 e~s~~~~~e~l~~~~~il~~LGL~yrv~~~~~gd---lg~~a------------------------------~~~~diE~ 360 (455)
T 2dq0_A 314 EESWEWHEKIIRNAEELFQELEIPYRVVNICTGD---LGYVA------------------------------AKKYDIEA 360 (455)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGG---SCSSC------------------------------SEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEEEECCCcc---ccChh------------------------------hceeeeee
Confidence 9999999999999999999999974444444332 22211 01233333
Q ss_pred ec-ccCCcccccceE--EEecCCcccccEEECC-CCCcccCEEEE-ecccCchHHHHHHHHHhhc---C--CCCCCCCCc
Q 046808 487 ED-ALGRKWQCSTIQ--VDFNLPQRFDIVYVDS-NSEKKRPIMIH-RAVLGSLERFFGVLIEHYA---G--DFPLWLSPI 556 (653)
Q Consensus 487 ~d-~~g~~~~~~~i~--~d~~~~~r~d~~~~~~-~g~~~~p~~g~-~~i~GgieRli~~L~e~~~---~--~~P~~lap~ 556 (653)
+. ..|.-.+++++. .||+ ++|++++|.+. +|+..++|++. .|+ |++|++++|+|+|+ | .||+||+|+
T Consensus 361 w~p~~~~~~ei~s~s~c~Dfq-arR~~iry~~~~~g~~~~vHtlngs~l--av~R~i~allE~~~~~dG~i~iP~~LaP~ 437 (455)
T 2dq0_A 361 WMPGQGKFREVVSASNCTDWQ-ARRLNIRFRDRTDEKPRYVHTLNSTAI--ATSRAIVAILENHQEEDGTVRIPKVLWKY 437 (455)
T ss_dssp EETTTTEEEEEEEEEECTTTT-HHHHTEEEESSTTSCCEECEEEEEEEE--EHHHHHHHHHHHSBCTTSCEECCGGGHHH
T ss_pred ecCcCCcccEEEeeccchhhH-hhccCcEEecCCCCcEEEEEEEechHh--HHHHHHHHHHHHccCCCCcEeCChhhCCc
Confidence 32 223223333332 4777 49999999987 78878888873 333 69999999999998 5 799999999
Q ss_pred e
Q 046808 557 Q 557 (653)
Q Consensus 557 ~ 557 (653)
+
T Consensus 438 ~ 438 (455)
T 2dq0_A 438 T 438 (455)
T ss_dssp H
T ss_pred c
Confidence 8
No 28
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=100.00 E-value=1.8e-42 Score=375.74 Aligned_cols=289 Identities=19% Similarity=0.278 Sum_probs=239.9
Q ss_pred ccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCcccccc---cccCcceecCccccHHHHHHHHHHHHHHHh
Q 046808 226 KPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQD---EAGGGLVFWHPKGSIVRHIIEDFWKKSHIE 302 (653)
Q Consensus 226 ~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~~---~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~ 302 (653)
.+...|.||.+-. ..+++|++||++||+|+|++ .+|+|+|+|+|.|++++++|++++++.+.+
T Consensus 152 dn~~vr~~g~~~~--------------~~~rdH~eLg~~l~l~dfe~~~kvsGsgfy~l~p~GarL~raL~~f~~d~~~~ 217 (522)
T 3vbb_A 152 DNKVERIWGDCTV--------------RKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGS 217 (522)
T ss_dssp HCEEEEEESCSSC--------------CCSCCHHHHHHHTTCEECHHHHHHHSTTCCEEETHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCC--------------CCccCHHHHHHhcCcEecccccccCCcceEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 4556677776411 24689999999999999973 678999999999999999999999999999
Q ss_pred cCCeEEecCccCchhhhhhcCcccccccccceeccc--------CCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEe
Q 046808 303 HDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNI--------EDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAEL 374 (653)
Q Consensus 303 ~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~--------~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~ 374 (653)
+||++|.||.|.+.++|..+|||+.|.++||++.+. .+++++|+||+|++++.++++++.+|++||+|++++
T Consensus 218 ~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~ 297 (522)
T 3vbb_A 218 RGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGL 297 (522)
T ss_dssp TTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEE
T ss_pred cCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEe
Confidence 999999999999999999999999999999999765 367899999999999999999999999999999999
Q ss_pred eeeeecCCCC---CCCCcceeceeEEcceeeeeCchh--HHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchh
Q 046808 375 GTVYRYELSG---SLHGLFRVRGFTQDDAHIFCLEDQ--IKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDI 449 (653)
Q Consensus 375 g~~fR~E~~~---~~~GL~R~REF~q~d~~ifg~~~~--~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~ 449 (653)
|+|||+|.++ .++||+|+|||+|.|+++||.|++ +.+++.+++.++.++|+.|||++..+.++++. +|...
T Consensus 298 s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrvv~l~tgd---lg~~a- 373 (522)
T 3vbb_A 298 STCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGS---LNHAA- 373 (522)
T ss_dssp EEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGG---CCTTC-
T ss_pred cccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCcc---CCCch-
Confidence 9999999963 369999999999999999999988 99999999999999999999987778877754 33221
Q ss_pred HHHHHHHHHHHHHhcCCceEEcCCCcccccceeeEEEec----ccCCcccccceEEEecCCcccccEEECC---CCCccc
Q 046808 450 WEKATSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIED----ALGRKWQCSTIQVDFNLPQRFDIVYVDS---NSEKKR 522 (653)
Q Consensus 450 ~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d----~~g~~~~~~~i~~d~~~~~r~d~~~~~~---~g~~~~ 522 (653)
..++|++++- .++...+|++| .||+. +|++++|.+. +|+...
T Consensus 374 -----------------------------sktyDiE~w~P~~~~y~EIsScSnc-~DyqA-rr~~iry~~~~~~~~k~~~ 422 (522)
T 3vbb_A 374 -----------------------------SKKLDLEAWFPGSGAFRELVSCSNC-TDYQA-RRLRIRYGQTKKMMDKVEF 422 (522)
T ss_dssp -----------------------------SEEEEEEEEETTTTEEEEEEEEEEC-TTHHH-HHHTCEESCC---CCCCCB
T ss_pred -----------------------------hheeceeEecCCCCceeEEEEecCC-CCCcc-ceeeeEEccccccCCCeee
Confidence 0123444432 23344567766 78888 9999999865 677888
Q ss_pred CEEEEe-cccCchHHHHHHHHHhhcC----CCCCCCCCceE----EEEecCh
Q 046808 523 PIMIHR-AVLGSLERFFGVLIEHYAG----DFPLWLSPIQA----RVLPVTD 565 (653)
Q Consensus 523 p~~g~~-~i~GgieRli~~L~e~~~~----~~P~~lap~~v----~Vi~~~~ 565 (653)
+++.+. |+ +++|++.||+|+|+. .+|+.|+|+-. .|+|+..
T Consensus 423 vhtlNgs~l--av~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~~~~ip~~~ 472 (522)
T 3vbb_A 423 VHMLNATMC--ATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVK 472 (522)
T ss_dssp CEEEEEEEE--EHHHHHHHHHHHHBCSSEEECCHHHHTTSCTTSSSEEECCS
T ss_pred ceEEeccch--HHHHHHHHHHHhCCCCCCeecChHhcCeeCCCcceEeecCC
Confidence 998763 33 699999999999875 68999999876 6888864
No 29
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=100.00 E-value=6.4e-42 Score=373.28 Aligned_cols=290 Identities=20% Similarity=0.289 Sum_probs=239.9
Q ss_pred cCCccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCccccc---ccccCcceecCccccHHHHHHHHHHHHH
Q 046808 223 DEKKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQ---DEAGGGLVFWHPKGSIVRHIIEDFWKKS 299 (653)
Q Consensus 223 ~~k~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~---~~~~~G~~~~lP~g~~l~~~I~~~~~~~ 299 (653)
++..+.+.|.+|.+-. ..+++++|++||+++|+|+|+ +.+|+|+|.|+|.|++++++|++++++.
T Consensus 165 ~e~~n~~v~~~g~~~~------------~~f~~~dH~~Lg~~lgl~d~~~~~k~~G~g~~~l~p~GarL~~aL~~~~~d~ 232 (501)
T 1wle_A 165 DESQARVLHVVGDKPA------------FSFQPRGHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNK 232 (501)
T ss_dssp SGGGCEEEEEESCCCC------------CSSCCCCHHHHHHHHTCEECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCC------------CCCCCCCHHHHHhhcCceecccccccccCceEEEcChHHHHHHHHHHHHHHH
Confidence 3344455677776311 124578999999999999997 4568999999999999999999999999
Q ss_pred HHhcCCeEEecCccCchhhhhhcCccccccc-ccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeee
Q 046808 300 HIEHDYDLLYTPHVAKADLWKISGHLDFYRE-NMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVY 378 (653)
Q Consensus 300 ~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~-~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~f 378 (653)
+.++||++|.||.|.+.++|.++|+++.|.+ +||++.+.++++++|+||+|++++.++++++.+|++||+|++++|+||
T Consensus 233 ~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~F 312 (501)
T 1wle_A 233 LIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCY 312 (501)
T ss_dssp HHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEE
T ss_pred HHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcc
Confidence 9999999999999999999999999999988 999998776789999999999999999999999999999999999999
Q ss_pred ecCCCC--CCCCcceeceeEEcceeeeeCc--hhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHH
Q 046808 379 RYELSG--SLHGLFRVRGFTQDDAHIFCLE--DQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKAT 454 (653)
Q Consensus 379 R~E~~~--~~~GL~R~REF~q~d~~ifg~~--~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~ 454 (653)
|+|.+. .++||+|+|||+|.|+++||.+ +++.+++.+++..+.++|+.|||+...+.++++. +|..+.
T Consensus 313 R~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLpyrvv~l~tgd---lg~~a~----- 384 (501)
T 1wle_A 313 RAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQE---LGLPAY----- 384 (501)
T ss_dssp CCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGG---STTTCS-----
T ss_pred cCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCcc---cCCchh-----
Confidence 999871 1699999999999999999999 5899999999999999999999976667777764 332210
Q ss_pred HHHHHHHHhcCCceEEcCCCcccccceeeEEEec----ccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEe-c
Q 046808 455 SALRDALDDKGWDYQIDEGGGAFYGPKIDLKIED----ALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHR-A 529 (653)
Q Consensus 455 ~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d----~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~-~ 529 (653)
.++|++++. .+...++|+++ .||+. +|++++|.+.+|+...+++.+. |
T Consensus 385 -------------------------~~~DiE~w~p~~~~~~Ei~s~sn~-~Dfqa-rR~~iry~~~~gk~~~vHtlngSg 437 (501)
T 1wle_A 385 -------------------------RKFDIEAWMPGRGRFGEVTSASNC-TDFQS-RRLHIMFQTEAGELQFAHTVNATG 437 (501)
T ss_dssp -------------------------EEEEEEEEETTTTEEEEEEEEEEC-TTHHH-HHHTCEEECSSSCEEECEEEEEEE
T ss_pred -------------------------heecHhhcccccccceeEEecccc-ccchh-hhcCcEEECCCCCEEEEEEECCcc
Confidence 123333332 13334567765 78885 9999999988888778887652 3
Q ss_pred ccCchHHHHHHHHHhhc---C--CCCCCCCCce-EEEE
Q 046808 530 VLGSLERFFGVLIEHYA---G--DFPLWLSPIQ-ARVL 561 (653)
Q Consensus 530 i~GgieRli~~L~e~~~---~--~~P~~lap~~-v~Vi 561 (653)
+ +++|++++|+|+|+ | .||++|+|+. .-+|
T Consensus 438 l--av~R~l~alLEn~q~~dG~i~iP~~L~Py~g~~~i 473 (501)
T 1wle_A 438 C--AVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRI 473 (501)
T ss_dssp E--EHHHHHHHHHHHHBCTTSCEECCGGGHHHHSSSEE
T ss_pred c--hHHHHHHHHHHhCCCCCCCEeCChhhcCccCcccc
Confidence 3 59999999999997 3 6999999986 4444
No 30
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=100.00 E-value=6.2e-42 Score=369.05 Aligned_cols=283 Identities=17% Similarity=0.241 Sum_probs=234.8
Q ss_pred ecCCccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCcccccc---cccCcceecCccccHHHHHHHHHHHH
Q 046808 222 GDEKKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQD---EAGGGLVFWHPKGSIVRHIIEDFWKK 298 (653)
Q Consensus 222 ~~~k~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~~---~~~~G~~~~lP~g~~l~~~I~~~~~~ 298 (653)
|+++.+.+.|.||.+-. -++++++|++||+++|+|+ ++ .+|+|+++|+|.|++++++|++++++
T Consensus 112 g~e~~n~~~~~~g~~~~------------~~~~~~~H~~lg~~l~l~d-~~~~~~~g~G~~~~~p~ga~l~~aL~~~~~~ 178 (421)
T 1ses_A 112 GGEEANREIKRVGGPPE------------FSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMD 178 (421)
T ss_dssp SSGGGCEEEEEESCCCC------------CSSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEETHHHHHHHHHHHHHHH
T ss_pred CCccccEEEEEeCCCCc------------cCCCCCCHHHHHHHcCccc-cccccccCCCeEEECcHHHHHHHHHHHHHHH
Confidence 56677788999997411 1256799999999999998 63 47899999999999999999999999
Q ss_pred HHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeee
Q 046808 299 SHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVY 378 (653)
Q Consensus 299 ~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~f 378 (653)
.+.++||++|.||+|++.++|.++||++.|.++||.+.| ++++|+||+|++++.++++++.++++||+|++++|+||
T Consensus 179 ~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d---~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~F 255 (421)
T 1ses_A 179 FMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE---TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAF 255 (421)
T ss_dssp HHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTT---SSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEE
T ss_pred HHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEcC---CeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCee
Confidence 999999999999999999999999999999999999864 78999999999999999999999999999999999999
Q ss_pred ecCCCCC---CCCcceeceeEEcceeeeeCc--hhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHH
Q 046808 379 RYELSGS---LHGLFRVRGFTQDDAHIFCLE--DQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKA 453 (653)
Q Consensus 379 R~E~~~~---~~GL~R~REF~q~d~~ifg~~--~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~ 453 (653)
|+|.++. ++||+|+|||+|.|+++||.| +++.+++.+++.++.++|+.|||+...+.++++. +|..+.
T Consensus 256 R~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~~rvv~l~t~d---lg~~a~---- 328 (421)
T 1ses_A 256 RSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGD---MGPGKW---- 328 (421)
T ss_dssp CCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCHHH---HCTTCS----
T ss_pred cCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCcc---CCchhh----
Confidence 9996211 599999999999999999999 8888889999999999999999975556766543 222110
Q ss_pred HHHHHHHHHhcCCceEEcCCCcccccceeeEEEec----ccCCcccccceEEEecCCcccccEEECCCCCcccCEEEE-e
Q 046808 454 TSALRDALDDKGWDYQIDEGGGAFYGPKIDLKIED----ALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIH-R 528 (653)
Q Consensus 454 ~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d----~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~-~ 528 (653)
.++|++++. .+...++|+++ .||+. +|++++|.+.+|+...+++.. .
T Consensus 329 --------------------------~~~DiE~w~p~~~~~~ei~s~s~~-~Dfqa-rr~~i~y~~~~~~~~~vhtlngs 380 (421)
T 1ses_A 329 --------------------------RQVDIEVYLPSEGRYRETHSCSAL-LDWQA-RRANLRYRDPEGRVRYAYTLNNT 380 (421)
T ss_dssp --------------------------EEEEEEEEETTTTEEEEEEEEEEE-ETHHH-HHHTCEEECTTSCEEECEEEEEE
T ss_pred --------------------------hcccHhheechhccchheeecccc-chhhh-hhhcCEeECCCCCEEEEEecCCc
Confidence 123333332 23345788888 89994 999999998877655555432 3
Q ss_pred cccCchHHHHHHHHHhhcC-----CCCCCCCCce
Q 046808 529 AVLGSLERFFGVLIEHYAG-----DFPLWLSPIQ 557 (653)
Q Consensus 529 ~i~GgieRli~~L~e~~~~-----~~P~~lap~~ 557 (653)
|+ |++|++++|+|+|+. .||++|+|+.
T Consensus 381 ~l--av~R~l~allE~~~~~dG~i~iP~~L~Py~ 412 (421)
T 1ses_A 381 AL--ATPRILAMLLENHQLQDGRVRVPQALIPYM 412 (421)
T ss_dssp EE--EETHHHHHHHHHHBCTTSCEECCGGGHHHH
T ss_pred cc--hHHHHHHHHHHhCCCCCCCEecChhcCCcc
Confidence 33 599999999999973 6999999985
No 31
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=100.00 E-value=2.6e-41 Score=364.75 Aligned_cols=276 Identities=17% Similarity=0.241 Sum_probs=233.8
Q ss_pred hhhchhHhhhcccCccccc----ccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccc
Q 046808 253 AKRRDHRRLGQDLDLFSIQ----DEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFY 328 (653)
Q Consensus 253 akk~~h~~l~~~l~l~~~~----~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~ 328 (653)
.++++|++||++||+|+|+ +.+|+|+|+|+|.|+++.++|++++++.+.++||++|.||.|.+.++|..+|||+.|
T Consensus 171 ~~~rdH~~Lg~~l~l~df~~~a~k~sGsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f 250 (484)
T 3lss_A 171 RAKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQF 250 (484)
T ss_dssp CCSSCHHHHHHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHH
T ss_pred CCCCCHHHHHhhCCceeccccccccCCceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccc
Confidence 4579999999999999997 346899999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCC---CCCCcceeceeEEcceeeeeC
Q 046808 329 RENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSG---SLHGLFRVRGFTQDDAHIFCL 405 (653)
Q Consensus 329 ~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~---~~~GL~R~REF~q~d~~ifg~ 405 (653)
.++||.+.+. +++++|+||+|++++.++++++.||++||+|++++|+|||+|.++ .++||+|+|||+|.|+++||.
T Consensus 251 ~e~mf~v~~~-~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~ 329 (484)
T 3lss_A 251 DEELYQVSGD-GDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCS 329 (484)
T ss_dssp HHTCCEEESS-SSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEEC
T ss_pred cccceEeecC-CcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeC
Confidence 9999998654 678999999999999999999999999999999999999999953 258999999999999999999
Q ss_pred chh--HHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceee
Q 046808 406 EDQ--IKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKID 483 (653)
Q Consensus 406 ~~~--~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d 483 (653)
+++ +.+++.+++..+.++|+.|||++..+.++++. +|... ..++|
T Consensus 330 pe~~~s~~e~e~~~~~~e~il~~LGLpyrvv~l~tgd---lg~~a------------------------------~~~yD 376 (484)
T 3lss_A 330 PRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGA---LNNAA------------------------------AKKYD 376 (484)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTT---CCSSC------------------------------SEEEE
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcc---cCCch------------------------------hheec
Confidence 999 99999999999999999999987788888764 33221 01234
Q ss_pred EEEec----ccCCcccccceEEEecCCcccccEEECC------CCCcccCEEEEecccCchHHHHHHHHHhhcC----CC
Q 046808 484 LKIED----ALGRKWQCSTIQVDFNLPQRFDIVYVDS------NSEKKRPIMIHRAVLGSLERFFGVLIEHYAG----DF 549 (653)
Q Consensus 484 ~~~~d----~~g~~~~~~~i~~d~~~~~r~d~~~~~~------~g~~~~p~~g~~~i~GgieRli~~L~e~~~~----~~ 549 (653)
++++. .++...+|+++ .||+. +|++++|.+. +|+...+|+.+.+.+ +++|++.||+|+|+. .+
T Consensus 377 iE~w~P~~~~~~EIsS~Snc-~dyqA-rr~~iry~~~~~~~~~~~~~~~vhtlNgt~~-av~R~l~AiLEn~q~~dGi~i 453 (484)
T 3lss_A 377 LEAWFPASGAFRELVSCSNC-TDYQS-QSVNCRYGPNLRGTAAQNVKEYCHMLNGTLC-AITRTMCCICENYQTEEGVVI 453 (484)
T ss_dssp EEEEETTTTEEEEEEEEEEC-TTHHH-HHHTCEESSCCC----CCSCEECEEEEEEEE-EHHHHHHHHHHHHBCSSEEEC
T ss_pred hheecCCCCCeeEEEEecCc-ccccc-cccceEEeccccccccCCCceeeeEEeccch-HHHHHHHHHHHhcCCCCCeeC
Confidence 44432 23444567766 79997 9999999865 356678888773312 699999999999974 68
Q ss_pred CCCCCCce--EEEEecCh
Q 046808 550 PLWLSPIQ--ARVLPVTD 565 (653)
Q Consensus 550 P~~lap~~--v~Vi~~~~ 565 (653)
|+.|+|+- .-+|+...
T Consensus 454 P~~L~pym~g~~~i~~~~ 471 (484)
T 3lss_A 454 PDVLRPYMMGIEMIRFEN 471 (484)
T ss_dssp CGGGGGGTTTCCEEECCC
T ss_pred ChhhcCccCCcceeecCc
Confidence 99999985 56677654
No 32
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=100.00 E-value=2.5e-40 Score=329.35 Aligned_cols=185 Identities=35% Similarity=0.641 Sum_probs=175.0
Q ss_pred cccCCCCCcccccCcccccccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCeeEEEecC
Q 046808 51 VATEPAETPSVTQNGKVEQAQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIENGFYYDFDM 130 (653)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~~g~~~d~~~ 130 (653)
...+..++++.+||++||+++++..|++|++++..+.+|.+|+|||++|||++|++++||+.++++|+++++||||||+.
T Consensus 29 ~~l~~~~vaakvNg~l~dL~~~l~~~~~ve~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~g~~~~~g~y~d~~~ 108 (224)
T 1tke_A 29 PGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDL 108 (224)
T ss_dssp HHHHHHCCEEEETTEEEETTCCBCSCEEEEEECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCCEETTEEEEEEEC
T ss_pred hhcccceEEEEECCEEeccceEcCCCCeEEEEecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEECCccCCeEEEEEeC
Confidence 34455677889999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCChhhHHHhhh-c-CCCCEEEEEECCceeeeeccccc
Q 046808 131 -EPLTDKDLKRIKKEMDRIIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILES-I-IEDPITIYHIGEEWWDLCAGPHV 207 (653)
Q Consensus 131 -~~lt~~~l~~Ie~~m~~iI~~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~~-~-~~~~v~i~~ig~~~~d~c~G~hv 207 (653)
.++|++|+++||++||++|++|+||++..++++||+++|+..+++||++|++. . ..+.|++|+|| +|+|+|+||||
T Consensus 109 ~~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g-~~~dlC~G~Hv 187 (224)
T 1tke_A 109 DRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHE-EYVDMCRGPHV 187 (224)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEET-TEEEEESCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeC-CEEEECCCcCC
Confidence 78999999999999999999999999999999999999998899999999987 6 46789999999 89999999999
Q ss_pred cccccccccceEEe--------ecCCccceeeecccccc
Q 046808 208 ETTGKINKKAVELE--------GDEKKPMLQRIYGTAWE 238 (653)
Q Consensus 208 ~~Tg~i~~~~f~l~--------~~~k~~~l~Ri~g~~~~ 238 (653)
+|||+| +.|+|. |++++.+++|+||++|+
T Consensus 188 ~~Tg~i--~~fkl~~~~~~yw~g~~~~~~lqRiyg~a~~ 224 (224)
T 1tke_A 188 PNMRFC--HHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224 (224)
T ss_dssp SBGGGC--CCEEEEEEEEEEGGGCTTSCEEEEEEEEECC
T ss_pred CcCccc--ceEEEEEecceeEcCCCCCceeEEEEEeccC
Confidence 999999 999999 78899999999999985
No 33
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=100.00 E-value=1.9e-40 Score=365.56 Aligned_cols=281 Identities=17% Similarity=0.235 Sum_probs=234.3
Q ss_pred cCCccceeeecccccccHHHHHHhhhhhHHhhhchhHhhhcccCcccccc---cccCcceecCccccHHHHHHHHHHHHH
Q 046808 223 DEKKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQD---EAGGGLVFWHPKGSIVRHIIEDFWKKS 299 (653)
Q Consensus 223 ~~k~~~l~Ri~g~~~~~~~~L~~~~e~~eeakk~~h~~l~~~l~l~~~~~---~~~~G~~~~lP~g~~l~~~I~~~~~~~ 299 (653)
++..+...|.+|.+-. -.+.++||++||++||+|+ ++ .+|+|+|+|+|.|+++.++|++++++.
T Consensus 222 ~e~~n~~~~~~g~~~~------------~~~~~~dH~~lg~~l~l~d-~~~~k~~G~g~~~~~p~Ga~l~~aL~~~~~~~ 288 (536)
T 3err_A 222 GEEANREIKRVGGPPE------------FSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDF 288 (536)
T ss_dssp SGGGCEEEEEESCCCC------------CSSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCC------------CCCCCCCHHHHHHHcCCcc-cccccCCCCceeEEcCHHHHHHHHHHHHHHHH
Confidence 4444556677775311 1245799999999999998 63 579999999999999999999999999
Q ss_pred HHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeee
Q 046808 300 HIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYR 379 (653)
Q Consensus 300 ~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR 379 (653)
+.++||++|.||.|.+.++|.++|||+.|.++||++.| ++++|+||+|++++.++++++.||++||+|++++|+|||
T Consensus 289 ~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~~---~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR 365 (536)
T 3err_A 289 MARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE---TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFR 365 (536)
T ss_dssp HHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEETT---TTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEEC
T ss_pred HHHcCCEEEeccccccHHHHHhcCCcccChhhceEecC---CCEEEccCCcHHHHHHHhcccccHhhCCeeEEEeccccc
Confidence 99999999999999999999999999999999999864 689999999999999999999999999999999999999
Q ss_pred cCCCC---CCCCcceeceeEEcceeeeeCch--hHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHH
Q 046808 380 YELSG---SLHGLFRVRGFTQDDAHIFCLED--QIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKAT 454 (653)
Q Consensus 380 ~E~~~---~~~GL~R~REF~q~d~~ifg~~~--~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~ 454 (653)
+|.++ .++||+|+|||+|.|+++||.++ ++.+++.+++..+.++|+.|||+...+.++++. +|...
T Consensus 366 ~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLpyrvv~~~tgd---lg~~a------ 436 (536)
T 3err_A 366 SEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGD---MGPGK------ 436 (536)
T ss_dssp CCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTT---SCTTC------
T ss_pred CCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcc---cCCCh------
Confidence 99942 37999999999999999999999 899999999999999999999987777887764 33221
Q ss_pred HHHHHHHHhcCCceEEcCCCcccccceeeEEEec----ccCCcccccceEEEecCCcccccEEECCCCCcccCEEEE-ec
Q 046808 455 SALRDALDDKGWDYQIDEGGGAFYGPKIDLKIED----ALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIH-RA 529 (653)
Q Consensus 455 ~~l~~~l~~~g~~~~~~~~~~~~~g~~~d~~~~d----~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~-~~ 529 (653)
..++|++++- .++...+|+++ .||+. +|++++|.+.+|+...+++.+ +|
T Consensus 437 ------------------------~~~yDiE~w~p~~~~~~Ei~s~sn~-~dyqa-rr~~iry~~~~~k~~~vhtlngs~ 490 (536)
T 3err_A 437 ------------------------WRQVDIEVYLPSEGRYRETHSCSAL-LDWQA-RRANLRYRDPEGRVRYAYTLNNTA 490 (536)
T ss_dssp ------------------------SEEEEEEEEEGGGTEEEEEEEEEEE-ETHHH-HHHTCEEECTTSCEEECEEEEEEE
T ss_pred ------------------------hheeeeeEecCCCCCeEEEEEecCc-cChhh-cccCeEEECCCCCeEeeeEEeccc
Confidence 0123444321 23344567765 79997 999999999888888888866 34
Q ss_pred ccCchHHHHHHHHHhhcC-----CCCCCCCCc
Q 046808 530 VLGSLERFFGVLIEHYAG-----DFPLWLSPI 556 (653)
Q Consensus 530 i~GgieRli~~L~e~~~~-----~~P~~lap~ 556 (653)
+ +++|++.+|+|+|+. .+|+.|+|+
T Consensus 491 ~--a~~R~l~ailen~q~~dg~i~iP~~L~py 520 (536)
T 3err_A 491 L--ATPRILAMLLENHQLQDGRVRVPQALIPY 520 (536)
T ss_dssp E--EETHHHHHHHHHHBCTTSCEECCGGGHHH
T ss_pred h--hHHHHHHHHHHhcCCCCCcEeCChhhCCc
Confidence 3 699999999999874 467777775
No 34
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=100.00 E-value=2.9e-40 Score=356.19 Aligned_cols=275 Identities=16% Similarity=0.227 Sum_probs=229.0
Q ss_pred HhhhchhHhhhcccCccccc---ccccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccc
Q 046808 252 EAKRRDHRRLGQDLDLFSIQ---DEAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFY 328 (653)
Q Consensus 252 eakk~~h~~l~~~l~l~~~~---~~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~ 328 (653)
...+++|++||++||+|+|+ +.+|+|+|.|+|.|++++++|++++++.+.++||++|.||.|.+.++|.++|||+.|
T Consensus 148 ~~~~~dH~elg~~l~l~df~~~~k~sGsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f 227 (485)
T 3qne_A 148 APAKLSHHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQF 227 (485)
T ss_dssp CBCCSCHHHHHHHTTCEEHHHHHHHHCTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHH
T ss_pred CCCccCHHHHHhhcCCcccccccccccceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCcccc
Confidence 34578999999999999996 467899999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecccCCceEEeccCChHHHHHHHHhhhcc--cCCCCcEEEEeeeeeecCCCC---CCCCcceeceeEEcceeee
Q 046808 329 RENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS--YRDFPIRVAELGTVYRYELSG---SLHGLFRVRGFTQDDAHIF 403 (653)
Q Consensus 329 ~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s--~~~lP~rl~~~g~~fR~E~~~---~~~GL~R~REF~q~d~~if 403 (653)
.++||.+.+. +++++|+||++.++..++.+++.+ |++||+|++++++|||+|.++ .++||+|+|||+|.|+++|
T Consensus 228 ~eemf~v~~~-~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f 306 (485)
T 3qne_A 228 DEELYKVIDG-EDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVL 306 (485)
T ss_dssp TTTCCEEEET-TEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEE
T ss_pred ccceEEEeCC-CCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEE
Confidence 9999999764 678999999988888889888777 999999999999999999975 3699999999999999999
Q ss_pred eCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhcCCceEEcCCCcccccceee
Q 046808 404 CLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDKGWDYQIDEGGGAFYGPKID 483 (653)
Q Consensus 404 g~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~g~~~d 483 (653)
|.++++.+++.+++..+.++|+.|||+...+.++++. +|... ..++|
T Consensus 307 ~~pe~s~~e~e~ml~~~e~il~~LgLpyrvv~~~tgd---lg~~a------------------------------~~tyD 353 (485)
T 3qne_A 307 TEPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGE---LNNAA------------------------------AKKYD 353 (485)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGG---CCTTC------------------------------SEEEE
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCCcc---cCCch------------------------------hhhee
Confidence 9999999999999999999999999987778877754 33221 01234
Q ss_pred EEEec----ccCCcccccceEEEecCCcccccEEECC---CCCcccCEEEE-ecccCchHHHHHHHHHhhcC----CCCC
Q 046808 484 LKIED----ALGRKWQCSTIQVDFNLPQRFDIVYVDS---NSEKKRPIMIH-RAVLGSLERFFGVLIEHYAG----DFPL 551 (653)
Q Consensus 484 ~~~~d----~~g~~~~~~~i~~d~~~~~r~d~~~~~~---~g~~~~p~~g~-~~i~GgieRli~~L~e~~~~----~~P~ 551 (653)
++++- .++...+|++| .||+. +|++++|.+. +|+...+++.+ +|+ +++|+|+||+|+|+. .+|+
T Consensus 354 iE~w~P~~~~~~Eiss~Snc-~dyqA-rr~~iry~~~~~~~~~~~~vhtlNgt~l--av~R~l~AiLEn~q~~dGi~iP~ 429 (485)
T 3qne_A 354 LEAWFPFQQEYKELVSCSNC-TDYQS-RNLEIRCGIKQQNQQEKKYVHCLNSTLS--ATERTICCILENYQKEDGLVIPE 429 (485)
T ss_dssp EEEEETTTTEEEEEEEEEEC-TTHHH-HHTTCEECC------CCCBCEEEEEEEE--EHHHHHHHHHHHSEETTEEECCH
T ss_pred eeEeccCCCceeEEEEecCC-cCccc-cccceEEecccccCCCceeeEEEecchh--HHHHHHHHHHHhcCCCCceecCh
Confidence 44332 23334567765 68887 9999999865 46677888766 343 699999999999874 6888
Q ss_pred CCCCceE---EEEecC
Q 046808 552 WLSPIQA---RVLPVT 564 (653)
Q Consensus 552 ~lap~~v---~Vi~~~ 564 (653)
.|+|+-. .++|+.
T Consensus 430 ~L~py~~g~~~~i~~~ 445 (485)
T 3qne_A 430 VLRKYIPGEPEFIPYI 445 (485)
T ss_dssp HHHTTSTTCCSEEECC
T ss_pred hhcCccCCcceEeecc
Confidence 8888753 567765
No 35
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=100.00 E-value=3.5e-38 Score=338.99 Aligned_cols=311 Identities=16% Similarity=0.151 Sum_probs=232.1
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHH
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPY 352 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~ 352 (653)
..++|++||+|.++.+++.|++.+++++++|||++|.||+||+.++|.++| +.+.++||+|.|++|+.++|||+.|++
T Consensus 11 ~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g--~~~~~~my~f~D~~g~~l~LRpd~T~~ 88 (400)
T 3od1_A 11 EKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVS--AILDQQLFKLLDQQGNTLVLRPDMTAP 88 (400)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHS--SSCGGGSCEEECTTSCEEEECSCSHHH
T ss_pred cCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcC--CccccceEEEECCCCCEEEECCCCHHH
Confidence 468999999999999999999999999999999999999999999999885 556899999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeE
Q 046808 353 HILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKY 432 (653)
Q Consensus 353 ~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~ 432 (653)
+++++.++. .++++|+|+||+|+|||+|+|+ .| |+|||+|+|+|+||.+++.+| +|++.++.++|+.||++++
T Consensus 89 ~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~~--~g--R~Ref~Q~g~ei~G~~~~~aD--aEvi~l~~~~l~~lgl~~~ 161 (400)
T 3od1_A 89 IARLVASSL-KDRAYPLRLAYQSNVYRAQQNE--GG--KPAEFEQLGVELIGDGTASAD--GEVIALMIAALKRAGLSEF 161 (400)
T ss_dssp HHHHHHHHC-SSSCSCEEEEEEEEEECCCC-----C--CCSEEEEEEEEEESCCSHHHH--HHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHhhc-ccCCCCeEEEEEcCEEeCCCCC--CC--CCCccEEeEEEEECCCChHhH--HHHHHHHHHHHHHCCCCce
Confidence 999988765 3568999999999999999988 88 999999999999999998888 6999999999999999999
Q ss_pred EEEecCCcc-----cccCCchhHH----------------------------------------------HH--------
Q 046808 433 EVNLSTKPE-----KAVGGDDIWE----------------------------------------------KA-------- 453 (653)
Q Consensus 433 ~v~l~~~~~-----~~~g~~~~~~----------------------------------------------~~-------- 453 (653)
.+.+||+.+ ..+|.++.+. .+
T Consensus 162 ~i~l~~~~i~~~ll~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~l~~~~~ 241 (400)
T 3od1_A 162 KVAIGHVGYVNALLMDVVGNEQRADRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLMNLLSLRGGRAAIEEARGLIQTEK 241 (400)
T ss_dssp EEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHTTCHHHHHHHHHHSSSCHHHHHHHHHGGGCEESHHHHHHHHTTCCSHH
T ss_pred EEEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHHhhhcChh
Confidence 999998642 1111111000 00
Q ss_pred ----H---HHHHHHHHhcCCc--eEEcCCC--c-cccc-ceeeEEEecccCCcccccceEEEecCCcccccEEECCCCCc
Q 046808 454 ----T---SALRDALDDKGWD--YQIDEGG--G-AFYG-PKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEK 520 (653)
Q Consensus 454 ----~---~~l~~~l~~~g~~--~~~~~~~--~-~~~g-~~~d~~~~d~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~ 520 (653)
. ..+.+.|+..|++ +.+|++. + +||+ ..+++.. +..|. +| ..|||||-.. ...|+
T Consensus 242 ~~~~l~~l~~l~~~L~~~gi~~~~~~D~~lvRgldYYTG~vFe~~~-~~~g~-----~i----~~GGRYD~L~-~~fG~- 309 (400)
T 3od1_A 242 GKTALAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVVFEGYG-NRLGV-----PL----CSGGRYDELL-SKFHR- 309 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGEEEETTCCSCSSSCCSEEEEEEE-TTCSS-----EE----EEEEECTTHH-HHTTC-
T ss_pred hHHHHHHHHHHHHHHHHcCCCceEEEeCCccCCCcccCCeEEEEEE-CCCCC-----ee----ecccccchhh-hccCC-
Confidence 0 1122334455655 6666642 2 4663 3444322 22221 22 3468998311 22344
Q ss_pred ccCEEEEecccCchHHHHHHHHHhhcCCCCCCCCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHH
Q 046808 521 KRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRN 599 (653)
Q Consensus 521 ~~p~~g~~~i~GgieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~ 599 (653)
..|++|+ |+ |+|||+.+|.+. +..++ .| +|+|+ .+++....|.+++++||++|++|+++. +.. ... +
T Consensus 310 ~~pavGf-ai--glerL~~~l~~~--~~~~~--~~-~v~v~-~~~~~~~~a~~~a~~LR~~G~~v~~~~~~~~-~~~--~ 377 (400)
T 3od1_A 310 PAQATGF-GV--RIDLLVEALNGE--IISNG--HE-QTCIL-FSNERRFEAIELARKKRANGEAVVLQDLAGV-TDV--D 377 (400)
T ss_dssp CCCEEEE-EE--EHHHHHHHHCC----------CC-CEEEE-ECGGGHHHHHHHHHHHHTTTCCEEEEEGGGC-SCH--H
T ss_pred CCCEEEE-Ee--eHHHHHHHHHhc--CCCCC--CC-eEEEE-ECcHHHHHHHHHHHHHHHCCCEEEEEecCCh-hHH--H
Confidence 3899997 66 799999887543 22221 12 36554 677778899999999999999999998 432 112 8
Q ss_pred HHHcCCCEEEEECcccc
Q 046808 600 AEKQKIPLMAVVGAKEV 616 (653)
Q Consensus 600 A~~~gip~~iiiG~~e~ 616 (653)
|...|++.++++..++-
T Consensus 378 ~~~~~~~~~~~~~~~~~ 394 (400)
T 3od1_A 378 AMSSNYQDVIYCIGTAG 394 (400)
T ss_dssp HHHTTSSEEEEECSCC-
T ss_pred HHHcCCCEEEEEecCCC
Confidence 99999999999887654
No 36
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=100.00 E-value=6.3e-36 Score=327.17 Aligned_cols=264 Identities=15% Similarity=0.188 Sum_probs=204.1
Q ss_pred hHhhhcccCcccccccccCcceecCccccHHHHHHHHHHHHH-HHhcCCeEEecCccCchhhhhhcCcccccccccceec
Q 046808 258 HRRLGQDLDLFSIQDEAGGGLVFWHPKGSIVRHIIEDFWKKS-HIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM 336 (653)
Q Consensus 258 h~~l~~~l~l~~~~~~~~~G~~~~lP~g~~l~~~I~~~~~~~-~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~ 336 (653)
..+++.+.|++. +..++|+|+|+|.|++++++|+++|++. +.++||++|.||+|++.++|.+|||++.|.++||.+.
T Consensus 205 ~~~ll~raG~i~--~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~ 282 (522)
T 2cja_A 205 PTQAMMKEGWLK--RGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVC 282 (522)
T ss_dssp HHHHHHHTTSEE--ECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEE
T ss_pred HHHHHHHCCCee--eeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeee
Confidence 356677778764 4578999999999999999999999975 8999999999999999999999999999999999984
Q ss_pred -----c-------------------------cCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEE-eeeeeecCCCCC
Q 046808 337 -----N-------------------------IEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAE-LGTVYRYELSGS 385 (653)
Q Consensus 337 -----d-------------------------~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~-~g~~fR~E~~~~ 385 (653)
| .+++.++||||+|++++.++++++.++++||+++|| +|+|||+| +++
T Consensus 283 ~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs 361 (522)
T 2cja_A 283 PPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGG 361 (522)
T ss_dssp CBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSS
T ss_pred cCCccchhhhhhhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCC
Confidence 2 146799999999999999999999999999999999 99999999 666
Q ss_pred CCCcceeceeEEcceeeeeCchhHHHHHHHHH-HHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHHHhc
Q 046808 386 LHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVL-DLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDALDDK 464 (653)
Q Consensus 386 ~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l-~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~ 464 (653)
++||+|+|||+|.|+++||+++++.+++.+++ ..+..+++.|||+ . +.+...+ +.+.++ ..... ..
T Consensus 362 ~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp-~-v~~~~D~--f~~a~~------G~~G~-~q-- 428 (522)
T 2cja_A 362 IHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIE-W-RKARVTP--WFMAQE------GLLGL-AE-- 428 (522)
T ss_dssp CCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC-E-EEEEC--------------------------
T ss_pred CCCCeEeEEEEEeeEEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC-E-EeeccCC--cccccc------ccccc-hh--
Confidence 79999999999999999999999998889999 8889999999997 3 4443221 110000 00000 00
Q ss_pred CCceEEcCCCcccc-cceeeEEEecc----cCCcccccceE--EEecCCcccccEEECCCCCcccCEEEEecccCchHHH
Q 046808 465 GWDYQIDEGGGAFY-GPKIDLKIEDA----LGRKWQCSTIQ--VDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERF 537 (653)
Q Consensus 465 g~~~~~~~~~~~~~-g~~~d~~~~d~----~g~~~~~~~i~--~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRl 537 (653)
+. ..++|++++-. .|...+|+++. .||+ ++||++.|. +| ..++++|+|+ |++|+
T Consensus 429 ------------~~a~~k~DiE~~~P~~~g~~~~~eisS~s~~~d~q-arr~~Ir~~--~~--~~vht~~~Gl--gv~Rl 489 (522)
T 2cja_A 429 ------------ENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKY-PKGFNVKLQ--SG--DELWSGCSGV--GLERW 489 (522)
T ss_dssp -------------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHH-HHHHTCEET--TC--CCEEEEEEEE--EHHHH
T ss_pred ------------ccccceEEEEEecccccCCCcEEEEeeechhhhhc-ccccceEcC--CC--CEEEEeccCc--HHHHH
Confidence 01 12446555422 34445555543 3444 489999875 33 4789998886 79999
Q ss_pred HHHHHHhhcC---CCCCCCCCc
Q 046808 538 FGVLIEHYAG---DFPLWLSPI 556 (653)
Q Consensus 538 i~~L~e~~~~---~~P~~lap~ 556 (653)
+.||+|+|++ .||..+.|+
T Consensus 490 i~AlLE~~~~~~~~wP~~lr~y 511 (522)
T 2cja_A 490 AAVFLAQKGLDPANWPEEFRNR 511 (522)
T ss_dssp HHHHHHHHCSCGGGSCHHHHHH
T ss_pred HHHHHHHcCCCCCcCchHHHHh
Confidence 9999999976 466555443
No 37
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=100.00 E-value=2e-32 Score=288.96 Aligned_cols=159 Identities=17% Similarity=0.175 Sum_probs=143.3
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhc--CcccccccccceecccCCceEEeccCCh
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKIS--GHLDFYRENMYDQMNIEDELYQLRPMNC 350 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~s--g~~~~~~~~~y~~~d~~~~~l~LrP~~~ 350 (653)
..++|++||+|.++.+++.|++.+++++.++||++|.||+|++.++|.++ ++++.+.++||+|.|++|+.++|||+.|
T Consensus 23 ~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T 102 (344)
T 1z7m_A 23 LLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFT 102 (344)
T ss_dssp CCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSH
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCc
Confidence 46899999999999999999999999999999999999999999999986 8888889999999999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 351 PYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 351 ~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
+++++++... +.++|+|+||+|+|||+|+|+ .| |+|||+|+|+|+||.+++.+| +|++.++.++|+.||++
T Consensus 103 ~~~aR~~~~~---~~~~P~rl~y~g~vfR~e~p~--~g--R~REF~Q~g~ei~g~~~~~aD--aEvi~l~~~~l~~lgl~ 173 (344)
T 1z7m_A 103 LPLVRLYSQI---KDSTSARYSYFGKIFRKEKRH--KG--RSTENYQIGIELFGESADKSE--LEILSLALQVIEQLGLN 173 (344)
T ss_dssp HHHHHHHHTC---CSCCCEEEEEEEECCCCCC-----------CCEEEEEEEESSCHHHHH--HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHhc---CCCCCeEEEEECcEEccCCCC--CC--CcceeEEEEEEEEcCCCcHHH--HHHHHHHHHHHHHCCCC
Confidence 9999998875 568999999999999999887 88 999999999999999998888 59999999999999998
Q ss_pred eEEEEecCCc
Q 046808 431 KYEVNLSTKP 440 (653)
Q Consensus 431 ~~~v~l~~~~ 440 (653)
++.+.+|+..
T Consensus 174 ~~~i~l~~~g 183 (344)
T 1z7m_A 174 KTVFEIGSAK 183 (344)
T ss_dssp SEEEEEEEHH
T ss_pred cEEEEECCHH
Confidence 8999999863
No 38
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.98 E-value=1.7e-31 Score=284.45 Aligned_cols=161 Identities=17% Similarity=0.079 Sum_probs=142.3
Q ss_pred cccCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccc-cccceecccCCceEEeccCChH
Q 046808 273 EAGGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYR-ENMYDQMNIEDELYQLRPMNCP 351 (653)
Q Consensus 273 ~~~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~-~~~y~~~d~~~~~l~LrP~~~~ 351 (653)
..++|++||+|.++.+++.|++.++++++++||++|.||+|++.++|.++| +.+. ++||+|.|++|+.++|||+.|+
T Consensus 24 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g--~~~~~~~my~~~D~~g~~l~LRpd~T~ 101 (373)
T 3rac_A 24 DRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRAR--SPESSRDWIRLFDGGGDAVALRPEMTP 101 (373)
T ss_dssp CCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTS--CTTSCCCCCBCCCCSSSCEEECSSSHH
T ss_pred CCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcC--CccchhceEEEECCCCCEEEECCcCHH
Confidence 568999999999999999999999999999999999999999999999986 4557 8999999999999999999999
Q ss_pred HHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCC----CCCcceeceeEEcceeeeeCc-hhHHHHHHHHHHHHHHHHHH
Q 046808 352 YHILVYQRKLQSYRDFPIRVAELGTVYRYELSGS----LHGLFRVRGFTQDDAHIFCLE-DQIKDEIRAVLDLTEEILLQ 426 (653)
Q Consensus 352 ~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~----~~GL~R~REF~q~d~~ifg~~-~~~~d~~~e~l~~~~~il~~ 426 (653)
++++++.++..+ +++|+|+||+|+|||+|+++. ..| |+|||+|+|+|+||.+ +...| +|++.++.++|+.
T Consensus 102 ~~aR~~~~~~~~-~~~P~r~~y~g~vfR~e~~g~~~~~~~g--R~ReF~Q~g~ei~g~~d~~~aD--aEvi~l~~~~l~~ 176 (373)
T 3rac_A 102 SIARMAAPRVAA-GRTPIRWCYCERVYRRTDDPASLSWASG--KAAESTQVGIERIGEEASVDVD--MDVLRLLHEASAA 176 (373)
T ss_dssp HHHHHHHHHHHT-TCCCCEEEEEEEEEECC--------------CEEEEEEEEEECSSCCCHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc-CCCCeEEEEEcceEccCCCcccccccCC--ccceeEEeeeEEECCCCCHHHH--HHHHHHHHHHHHH
Confidence 999999877543 689999999999999999821 167 9999999999999999 66777 6999999999999
Q ss_pred cCCCeEEEEecCCc
Q 046808 427 FGFNKYEVNLSTKP 440 (653)
Q Consensus 427 lGl~~~~v~l~~~~ 440 (653)
||++++.+.+|++.
T Consensus 177 lgl~~~~i~l~~~~ 190 (373)
T 3rac_A 177 AGVRHHRIVVSHAR 190 (373)
T ss_dssp HTCCSCEEEEEETT
T ss_pred cCCCceEEEecCHH
Confidence 99988999999875
No 39
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.97 E-value=8.5e-31 Score=268.46 Aligned_cols=240 Identities=13% Similarity=0.106 Sum_probs=188.2
Q ss_pred cCcceecCccccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceeccc----------------
Q 046808 275 GGGLVFWHPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNI---------------- 338 (653)
Q Consensus 275 ~~G~~~~lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~---------------- 338 (653)
.+|+|.+.+.+++|++.|++++++ ....||++|.||.|.+.++|.++|||+.|.++||....-
T Consensus 53 ~~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~ 131 (346)
T 3mf2_A 53 SDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDA 131 (346)
T ss_dssp ETTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHT
T ss_pred CCceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhcc
Confidence 389999999999999999999999 989999999999999999999999999999999986421
Q ss_pred --------CCceEEeccCChHHHHHHHHhh-hcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhH
Q 046808 339 --------EDELYQLRPMNCPYHILVYQRK-LQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQI 409 (653)
Q Consensus 339 --------~~~~l~LrP~~~~~~~~~~~~~-~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~ 409 (653)
.+++++|.||+|++++.++++. ..+ +.|+|+..+|+|||+|.+ +||+|+|||+|.|+++||+|+++
T Consensus 132 ~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~plr~~~~g~CFR~EaS---~GL~RvhqF~kvE~v~~~tpEqs 206 (346)
T 3mf2_A 132 GGDWTTSLSPADLVLSPAACYPVYPIAASRGPLP--KGGLRFDVAADCFRREPS---KHLDRLQSFRMREYVCIGTPDDV 206 (346)
T ss_dssp TSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTCEEEEEEEEEECCCCC---SSTTSCSEEEEEEEEEEESHHHH
T ss_pred ccccccccCCCCEEEcccccHHHHHHHccCCccc--ccCeEEEEECCccCCcCC---CCCeeeeeeEEEEEEEEeCHHHH
Confidence 1458999999999999999975 444 459999999999999993 79999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccCCchhHHHHHHHHHHHH-HhcCCceEEcCCCcccccceeeEEEec
Q 046808 410 KDEIRAVLDLTEEILLQFGFNKYEVNLSTKPEKAVGGDDIWEKATSALRDAL-DDKGWDYQIDEGGGAFYGPKIDLKIED 488 (653)
Q Consensus 410 ~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~~~~g~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~~~~g~~~d~~~~d 488 (653)
.+++.++++.+.++|+.|||+ |.+.+.+.+ +-... ..+.... ... ..++|++++-
T Consensus 207 ~~e~e~l~~~ae~il~~LgLp-yrv~~~~D~----~f~~~-----G~l~~~~Q~~~--------------~~kyDlevw~ 262 (346)
T 3mf2_A 207 SDFRERWMVRAQAIARDLGLT-FRVDYASDP----FFGRV-----GQMKAVSQKQQ--------------QLKFELLIPL 262 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-CEEEECCCC----CCHHH-----HHHHHHHHHHT--------------TCEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHCCCC-EEEEEccCC----CcCcc-----cchhhhccccc--------------cceEEEEEEc
Confidence 999999999999999999996 555554332 11110 0000000 000 1245666541
Q ss_pred ----ccCCcccccceEEEecCCcccccEEECCCCCcccCEEEEecccCchHHHHHHHHHhhcC---CCCCC
Q 046808 489 ----ALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAG---DFPLW 552 (653)
Q Consensus 489 ----~~g~~~~~~~i~~d~~~~~r~d~~~~~~~g~~~~p~~g~~~i~GgieRli~~L~e~~~~---~~P~~ 552 (653)
.+....+|+++ .||+. +|++++|.+ | ...+++|.|+ |++|++.||+|+||. .||..
T Consensus 263 p~~~~y~EisS~Sn~-~dfqa-rR~~Ir~~~--~--~~vHT~~sgl--av~R~l~AiLen~G~d~~~wP~~ 325 (346)
T 3mf2_A 263 RSEEQPTACMSFNYH-REHFG-TTWGIQDAN--G--EPAHTGCVAF--GMDRLAVAMFHTHGTDLSAWPAK 325 (346)
T ss_dssp SCSSSCEEEEEEEEC-TTHHH-HHHTCBCTT--S--SBCEEEEEEE--EHHHHHHHHHHHHCSCGGGSCHH
T ss_pred CCCCCeeEEEeeecc-cchhh-hhhcceeCC--C--CeEEEcccch--HHHHHHHHHHHHcCCCccccCHH
Confidence 22223345554 68886 999999853 2 5688888886 699999999999986 46643
No 40
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.93 E-value=6.6e-26 Score=212.82 Aligned_cols=139 Identities=22% Similarity=0.301 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCEEEecccccC-eeEEEecC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHH
Q 046808 88 EQLLRIRHTCAHVMAMAVQKLYP-DAKVTIGPWIEN-GFYYDFDM-EPLTDKDLKRIKKEMDRIIGRNLPLVREEVSRDE 164 (653)
Q Consensus 88 ~~~~~~~hS~~hlL~~A~~~l~~-~~~~~~~~~~~~-g~~~d~~~-~~lt~~~l~~Ie~~m~~iI~~~~pI~~~~~~~~e 164 (653)
+|.+|++||++|||++|++++|| ++.+++++++++ |+||||+. .++|++++++||++||++|++|+||++..++++|
T Consensus 2 ~g~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~e 81 (157)
T 1v4p_A 2 YSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREE 81 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHH
T ss_pred cchHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHH
Confidence 57899999999999999999997 477888988875 89999986 7899999999999999999999999999999999
Q ss_pred HHHHHHhcCChhhHHHhhhcCC--CCEEEEEECCce-eeeeccccccccccccccceEEeecC--Cccceeeecc
Q 046808 165 AKSRIMAIKEPYKMEILESIIE--DPITIYHIGEEW-WDLCAGPHVETTGKINKKAVELEGDE--KKPMLQRIYG 234 (653)
Q Consensus 165 A~~~~~~~~~~~k~~ll~~~~~--~~v~i~~ig~~~-~d~c~G~hv~~Tg~i~~~~f~l~~~~--k~~~l~Ri~g 234 (653)
|.++|... .++.+ ..++ +.||+|+|| ++ .|+|+||||+|||+| +.|+|...+ +.+...|+..
T Consensus 82 A~~~f~~~--~~~~~---~~~~~~~~vrv~~ig-~~~~~~C~GtHv~~Tg~I--~~fki~~~~~~~~~~~l~v~~ 148 (157)
T 1v4p_A 82 AEKMFGED--MYDLF---PVPEDVRILKVVVIE-DWNVNACNKEHTKTTGEI--GPIKIRKVRFRKSKGLLEIHF 148 (157)
T ss_dssp HHHHHGGG--GSCSS---CCCTTCCEEEEEEET-TTEEEECCSCCCSBGGGT--CCEEEEEEEEETTTTEEEEEE
T ss_pred HHHhhCcc--ccccc---cCCCCCCeEEEEEEC-CeeEeCCCCCccCChhhc--ceEEEEEEEecCCCcEEEEEE
Confidence 99998742 22211 1233 579999999 88 899999999999999 999999332 2333345544
No 41
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=99.92 E-value=1.3e-25 Score=224.21 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=132.5
Q ss_pred ccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccccc-CeeEEEecCCCCCHHHHHHHHHHHHHH
Q 046808 70 AQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIE-NGFYYDFDMEPLTDKDLKRIKKEMDRI 148 (653)
Q Consensus 70 ~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~-~g~~~d~~~~~lt~~~l~~Ie~~m~~i 148 (653)
..++..|++|++.+||++|...|++||++|||++|++++||.. +.|+.++ +++|+||+ .++|++++++||++||++
T Consensus 73 ~~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~-~~lt~e~l~~IE~~vn~~ 149 (241)
T 3kew_A 73 EKEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV-GFLDEKTIREAEKEANRL 149 (241)
T ss_dssp SSCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE-SCCCHHHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999765 4677775 89999999 899999999999999999
Q ss_pred HhcCCCEEEEEecHHHHHHHHHhcCChhhHHHhhhcCCCCEEEEEECCce-eeeeccccccccccccccceEEeecCCcc
Q 046808 149 IGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILESIIEDPITIYHIGEEW-WDLCAGPHVETTGKINKKAVELEGDEKKP 227 (653)
Q Consensus 149 I~~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~~~~~~~v~i~~ig~~~-~d~c~G~hv~~Tg~i~~~~f~l~~~~k~~ 227 (653)
|.+|+||++.+++++||.+++.. . +.+ ...+.||||+|| ++ .++|+||||+|||+| +.|+|.+.++.+
T Consensus 150 I~~~~pV~~~~~~~~eA~~~~~~------~-~~e-~~~~~VRvv~ig-~~~~~~CgGtHV~~TgeI--g~fkI~~~~~~~ 218 (241)
T 3kew_A 150 IFENLEVKSYAPSKKELKKVKTR------R-ALP-KTDEEIRIVEIV-GLDLNACCGVHPRNTRDL--QVIKIRRWEKHK 218 (241)
T ss_dssp HHHTCBEEEECCCTTTTTTCCCS------S-CCC-CCSSCCCEEEET-TTEEEECCSCCCSBSGGG--CCEEEEEEEEET
T ss_pred HHcCCCEEEEEcCHHHHHhcChh------h-cCC-ccCCcEEEEEEC-CeEEEcCCCCCcCCHhhc--CCEEEEEEeccC
Confidence 99999999999999999876311 0 111 126789999999 75 899999999999999 999999665555
Q ss_pred ceeeeccccc
Q 046808 228 MLQRIYGTAW 237 (653)
Q Consensus 228 ~l~Ri~g~~~ 237 (653)
...|++..+-
T Consensus 219 ~~~RI~~~~G 228 (241)
T 3kew_A 219 NATRIEYVAG 228 (241)
T ss_dssp TEEEEEEEEG
T ss_pred CcEEEEEEEC
Confidence 6679988753
No 42
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=99.89 E-value=9.6e-23 Score=229.19 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=131.8
Q ss_pred CCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccc-cCeeEEEecC-CCCCHHHHHHHHHHHHHHHhc
Q 046808 74 SETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWI-ENGFYYDFDM-EPLTDKDLKRIKKEMDRIIGR 151 (653)
Q Consensus 74 ~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~-~~g~~~d~~~-~~lt~~~l~~Ie~~m~~iI~~ 151 (653)
..|++|+..+||++|...|++||++|||++|++++||....+.+..+ ++++||||+. .++|++++++||++||++|.+
T Consensus 579 ~~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~lT~edL~~IE~~vNeiI~~ 658 (739)
T 2ztg_A 579 EVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILA 658 (739)
T ss_dssp CTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999976433444433 5899999987 789999999999999999999
Q ss_pred CCCEEEEEecHHHHHHHHHhcCChhhHHHhh--hcCCCCEEEEEECCceeeeeccccccccccccccceEEeecCC-ccc
Q 046808 152 NLPLVREEVSRDEAKSRIMAIKEPYKMEILE--SIIEDPITIYHIGEEWWDLCAGPHVETTGKINKKAVELEGDEK-KPM 228 (653)
Q Consensus 152 ~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~--~~~~~~v~i~~ig~~~~d~c~G~hv~~Tg~i~~~~f~l~~~~k-~~~ 228 (653)
|+||++..++++||++++ +..|+. ..+.+.||||+|| ++.++|+||||+|||+| +.|+|.+.++ .+.
T Consensus 659 nlpV~~~~~s~eEA~~~~-------~l~L~~~~~~~~d~VRVV~IG-d~~elCGGTHV~nTgeI--g~fkIls~s~i~~G 728 (739)
T 2ztg_A 659 NKPIKWEWMDRIEAERKF-------GFRLYQGGVPPGRKIRVVQVG-DDVQACGGTHCRSTGEI--GMLKILKVESIQDG 728 (739)
T ss_dssp TCBEEEEEEEHHHHHHHH-------CGGGGTTCCCCSSEEEEEEET-TEEEECCSCCCSBGGGG--CCEEEEEEEEEETT
T ss_pred CCCEEEEEeCHHHHHHhC-------CHhhhcCCCCCCCeEEEEEEC-CeeeCcCCcCcccHhHc--CcEEEEEEeEEcCC
Confidence 999999999999999986 344553 2346789999999 79999999999999999 9999996543 566
Q ss_pred eeeecccc
Q 046808 229 LQRIYGTA 236 (653)
Q Consensus 229 l~Ri~g~~ 236 (653)
+.|++..+
T Consensus 729 vrRIeavt 736 (739)
T 2ztg_A 729 VIRFEFAA 736 (739)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 78887764
No 43
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=99.88 E-value=1.3e-22 Score=228.13 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=135.5
Q ss_pred ccccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccc-cCeeEEEecC-CCCCHHHHHHHHHHHHH
Q 046808 70 AQMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWI-ENGFYYDFDM-EPLTDKDLKRIKKEMDR 147 (653)
Q Consensus 70 ~~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~-~~g~~~d~~~-~~lt~~~l~~Ie~~m~~ 147 (653)
..++..|++|+..+||++|...|++||++|||++|++++||.+..+.|+.+ .+++|+||+. .++|++++++||++||+
T Consensus 588 ~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNe 667 (752)
T 2zze_A 588 PGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANR 667 (752)
T ss_dssp GGGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHH
T ss_pred cCccCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 345779999999999999999999999999999999999987777888877 5899999997 88999999999999999
Q ss_pred HHhcCCCEEEEEecHHHHHHHHHhc----CChhhHHHhhhcCCCCEEEEEECCce-eeeeccccccccccccccceEEee
Q 046808 148 IIGRNLPLVREEVSRDEAKSRIMAI----KEPYKMEILESIIEDPITIYHIGEEW-WDLCAGPHVETTGKINKKAVELEG 222 (653)
Q Consensus 148 iI~~~~pI~~~~~~~~eA~~~~~~~----~~~~k~~ll~~~~~~~v~i~~ig~~~-~d~c~G~hv~~Tg~i~~~~f~l~~ 222 (653)
+|.+|+||++..++++||.+++... +.+| .+.||||+|| ++ .++|+||||+|||+| +.|+|.+
T Consensus 668 iI~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~y---------gd~VRVV~IG-d~svelCGGTHV~nTgeI--G~fKIls 735 (752)
T 2zze_A 668 IVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVP---------GREIRVVXIE-DWDVQACGGTHLPSTGLV--GPIXILR 735 (752)
T ss_dssp HHHHTCBEEEEEEEHHHHHHHHCGGGCSSCCCC---------SSEEEEEEET-TTEEEECCSCCCSBGGGG--CCEEEEE
T ss_pred HHHhCCccceeecCHHHHhhcchhhhhcCCCCC---------CCeEEEEEEC-CceeCCCCCCccCCHhHc--cEEEEEE
Confidence 9999999999999999999986521 2222 6789999999 75 899999999999999 9999996
Q ss_pred cCC-ccceeeecccc
Q 046808 223 DEK-KPMLQRIYGTA 236 (653)
Q Consensus 223 ~~k-~~~l~Ri~g~~ 236 (653)
.+. .+.+.|++..+
T Consensus 736 ~s~i~~GvrRIeavt 750 (752)
T 2zze_A 736 TERIQDGVERIIFAC 750 (752)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEcCCEEEEEEEe
Confidence 543 56678887653
No 44
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=99.88 E-value=9.4e-23 Score=200.40 Aligned_cols=135 Identities=14% Similarity=0.064 Sum_probs=119.0
Q ss_pred cccCCCCeEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCC--CEEEecccccCeeEEEecC-CCCCHHHHHHHHHHHHH
Q 046808 71 QMTSETEKVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPD--AKVTIGPWIENGFYYDFDM-EPLTDKDLKRIKKEMDR 147 (653)
Q Consensus 71 ~~~~~~~~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~--~~~~~~~~~~~g~~~d~~~-~~lt~~~l~~Ie~~m~~ 147 (653)
.++..|++|++.+||++|...|++||++|||++|++++||. .....++..++++|+||+. .++|++ +++||++||+
T Consensus 75 ~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~e-l~~IE~~vn~ 153 (216)
T 2e1b_A 75 EKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIISLFNK 153 (216)
T ss_dssp GGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHHHHHH
T ss_pred CCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCCCCHH-HHHHHHHHHH
Confidence 36889999999999999999999999999999999999987 4777666667999999997 678886 9999999999
Q ss_pred HHhcCCCEEEEEecHHHHHHHHHhcCChhhHHHhhhcCCCCEEEEEECCce-eeeeccccccccccccccceEEeecC-C
Q 046808 148 IIGRNLPLVREEVSRDEAKSRIMAIKEPYKMEILESIIEDPITIYHIGEEW-WDLCAGPHVETTGKINKKAVELEGDE-K 225 (653)
Q Consensus 148 iI~~~~pI~~~~~~~~eA~~~~~~~~~~~k~~ll~~~~~~~v~i~~ig~~~-~d~c~G~hv~~Tg~i~~~~f~l~~~~-k 225 (653)
+|++|+||++.++++ ||+|+|| ++ .++|+||||+|||+| +.|+|.+.+ .
T Consensus 154 ~I~~~~pv~~~~~~~--------------------------vRvv~ig-~~~~~~CgGtHV~~TgeI--g~fkI~~~~~~ 204 (216)
T 2e1b_A 154 YVDEGGEVKIWWEGD--------------------------RRYTQIR-DFEVIPCGGTHVKDIKEI--GHIKKLKRSSI 204 (216)
T ss_dssp HHHHCCBEEEEESSS--------------------------CEEEEET-TSCEECCCSCCCSBGGGT--CCEEEEEEEEE
T ss_pred HHhcCCCEEEEEcCC--------------------------EEEEEEC-CEEEECCCCCCcccHhhC--ceEEEEEEeEE
Confidence 999999999998864 9999999 76 899999999999999 999999654 3
Q ss_pred ccceeeeccc
Q 046808 226 KPMLQRIYGT 235 (653)
Q Consensus 226 ~~~l~Ri~g~ 235 (653)
.+...|++..
T Consensus 205 ~~g~rRi~~~ 214 (216)
T 2e1b_A 205 GRGKQRLEMW 214 (216)
T ss_dssp ETTEEEEEEE
T ss_pred cCCEEEEEEE
Confidence 4566777653
No 45
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.88 E-value=8.2e-23 Score=209.12 Aligned_cols=127 Identities=16% Similarity=0.108 Sum_probs=113.4
Q ss_pred HHHHHHH--HHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCC-C
Q 046808 291 IIEDFWK--KSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRD-F 367 (653)
Q Consensus 291 ~I~~~~~--~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~-l 367 (653)
.|+++++ +++++|||++|.||+||+.++|.+ + .|.|++|+.++|||+.|++++ .+.+ .+++ +
T Consensus 5 ~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~----d-------~f~d~~g~~l~LRpd~T~~~a---~~~~-~~~~~~ 69 (275)
T 1usy_A 5 DFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG----N-------FFLDRKGNLFSIREDFTKTVL---NHRK-RYSPDS 69 (275)
T ss_dssp CHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS----S-------CEEETTSCEEEECCCHHHHHH---HHHT-TCTTCC
T ss_pred hHHHHHHHHHHHHHCCCEEecCccccchhhhcc----c-------ccCCCCCCEEEeCCcChHHHH---HHHh-hcCCCC
Confidence 5777888 999999999999999999999965 1 456899999999999999988 3433 3567 9
Q ss_pred CcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcc
Q 046808 368 PIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVNLSTKPE 441 (653)
Q Consensus 368 P~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~l~~~~~ 441 (653)
|+|+||+|+|||+|+|| . |||+|+|+|+||.+++.+| +|++.++.++|+.||++++.+++|+++.
T Consensus 70 p~R~~y~g~vfR~e~~~------~-Ref~Q~g~ei~g~~~~~~D--aEvi~l~~~~l~~lgl~~~~i~l~~~~~ 134 (275)
T 1usy_A 70 QIKVWYADFVYRYSGSD------L-VAEYQLGLEKVPRNSLDDS--LEVLEIIVESASEFFEGPVIVEIGHTGV 134 (275)
T ss_dssp CEEEECCEEEEEEETTE------E-EEEEEEEEEEESCCSHHHH--HHHHHHHHHHHHHHCCSCEEEEEEETTH
T ss_pred ceEEEEeceEEecCCCC------C-CeeeEeCEEEecCCCchhH--HHHHHHHHHHHHHcCCCCeEEEeCCHHH
Confidence 99999999999999988 3 9999999999999999888 6999999999999999889999999873
No 46
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.74 E-value=1e-17 Score=171.70 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=119.3
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhccc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSY 364 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~ 364 (653)
....++++++.+++.+..+||++|.||.|++.++|..+|+++ +++||++.+..+++++|||+++|.+..+++....+
T Consensus 69 ~~h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~--~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~- 145 (288)
T 3dsq_A 69 HRPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGE--DHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERL- 145 (288)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC----CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTT-
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCc--ccccEEeecccccchhhhhcChHHHHHHHHHHHhC-
Confidence 334568999999999999999999999999999999988875 23677655444467899999999988877766544
Q ss_pred CCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEE
Q 046808 365 RDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVN 435 (653)
Q Consensus 365 ~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~ 435 (653)
+++|+|+|++|+|||+|.++ .+ |+|||+|.+++++|.+++... .++..++.++++.||++++.+.
T Consensus 146 ~~~PlrlfeiG~vFR~E~~~--~~--r~~EF~qle~~i~g~~~~~~f--~elkg~le~ll~~LGl~~~~~~ 210 (288)
T 3dsq_A 146 WDKPIRIFEIGTCYRKESQG--AQ--HLNEFTMLNLTELGTPLEERH--QRLEDMARWVLEAAGIREFELV 210 (288)
T ss_dssp SCSCEEEEEEEEEECSCCSS--SC--CCSEEEEEEEEEETCCGGGHH--HHHHHHHHHHHHHHTCCCCEEE
T ss_pred CCCCEEEEEEeeEEecCCCC--CC--cCccEEEEEEEEEcCCchhhH--HHHHHHHHHHHHHcCCCCcEEe
Confidence 78999999999999999987 56 999999999999999766554 6999999999999999656554
No 47
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.65 E-value=5.6e-16 Score=137.06 Aligned_cols=98 Identities=18% Similarity=0.300 Sum_probs=92.3
Q ss_pred CCCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC---CCCHHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCC-
Q 046808 553 LSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH---GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFG- 628 (653)
Q Consensus 553 lap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~---~~~~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~- 628 (653)
-.|.||.|+|++++..+||.+|+++|++.|++|++|. +.++|++|+.|...|+||++|||++|.++|+|+||.|..
T Consensus 6 ~~P~Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVsVR~r~~~ 85 (130)
T 1v95_A 6 SGPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGT 85 (130)
T ss_dssp CCCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEECSSS
T ss_pred CCCCeEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEechHHhcCeeEEEecCCC
Confidence 3689999999999999999999999999999999998 489999999999999999999999999999999999988
Q ss_pred -CceeeeeHHHHHHHHHHHHhhh
Q 046808 629 -GELGTMKVDDFISRIKSATENR 650 (653)
Q Consensus 629 -~~q~~v~~~el~~~i~~~~~~~ 650 (653)
+++..+|++|+++.|++.+..+
T Consensus 86 ~~e~~~m~lde~i~~l~~~~~~~ 108 (130)
T 1v95_A 86 PQEHRNMPQADAMVLVARNYERY 108 (130)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCccCccCHHHHHHHHHHHHHHH
Confidence 8899999999999998877655
No 48
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.44 E-value=9e-13 Score=135.72 Aligned_cols=133 Identities=16% Similarity=0.211 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccc--cccccceecccCCceEEeccCChHHHHHHHHhhhcccC
Q 046808 288 VRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDF--YRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYR 365 (653)
Q Consensus 288 l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~--~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~ 365 (653)
.++++.+.+++.+...||.+|.||+|++.+.|...+.... +.+++|.+ ++..+|||+.+|.+...++... +..
T Consensus 78 ~~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~----~~~~~LR~slsp~L~~~l~~n~-~~~ 152 (290)
T 3qtc_A 78 YLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRV----DKNFCLRPMLTPNLYNYLRKLD-RAL 152 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEE----TTTEEECSCSHHHHHHHHHHHT-TTS
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheee----CCCeeEcccChHHHHHHHHHhh-ccC
Confidence 3689999999999999999999999999999877654322 34567776 2579999999999887776543 335
Q ss_pred CCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 046808 366 DFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEV 434 (653)
Q Consensus 366 ~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v 434 (653)
+.|+|+|++|+|||+|..+ .+ |.+||+|.|++++|.... +.++..++.++++.||+ ++.+
T Consensus 153 ~~p~rlfeiG~vFR~E~~~--~~--~~~Ef~ql~~~~~g~~~~----f~elkg~le~ll~~lGl-~~~~ 212 (290)
T 3qtc_A 153 PDPIKIFEIGPCYRKESDG--KE--HLEEFTMLVFWQMGSGCT----RENLESIITDFLNHLGI-DFKI 212 (290)
T ss_dssp CSSEEEEEEEEEECCCSCS--SS--CCSEEEEEEEEEESTTCC----HHHHHHHHHHHHHHHTC-CCEE
T ss_pred CCCeEEEEEcCEEecCCCC--Cc--CcchheEEEEEEEcCChH----HHHHHHHHHHHHHHcCC-CcEE
Confidence 7899999999999999765 56 999999999999997642 35788999999999999 4554
No 49
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.18 E-value=1.3e-10 Score=119.42 Aligned_cols=128 Identities=13% Similarity=0.019 Sum_probs=90.8
Q ss_pred CccccHHHHHHHHHHHHHHHhcCCeEEecCccCch-hhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhh
Q 046808 282 HPKGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKA-DLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRK 360 (653)
Q Consensus 282 lP~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~-~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~ 360 (653)
.....+++..|.+.+++.+.++||.+|.||+|++. +++..+...+. .++|.+. ..|+.++|+...+.. ...
T Consensus 11 ~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~--a~~f~~~-~~~~~~~L~~Spe~~-----~~~ 82 (294)
T 1nnh_A 11 ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG--MEPAEVE-IYGVKMRLTHSMILH-----KQL 82 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC--CCCCEEE-ETTEEEEECSCSHHH-----HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc--ceeEEEE-cCCCCEEeccChHHH-----HHH
Confidence 34567899999999999999999999999999999 88877622222 4577742 346688897433322 222
Q ss_pred hcccCCCCcEEEEeeeeeecCCCCCCCCcceec-eeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHc
Q 046808 361 LQSYRDFPIRVAELGTVYRYELSGSLHGLFRVR-GFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQF 427 (653)
Q Consensus 361 ~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~R-EF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~l 427 (653)
+.. .-|.|+||+|+|||+|.||...| |.+ ||+|.|+|..+.+. .+++.++.++++.+
T Consensus 83 l~~--~g~~rvf~ig~~FR~E~pq~~~~--RH~~EFtqle~e~~~~~~------~~l~~~~e~l~~~l 140 (294)
T 1nnh_A 83 AIA--MGLKKIFVLSPNIRLESRQKDDG--RHAYEFTQLDFEVERAKM------EDIMRLIERLVYGL 140 (294)
T ss_dssp HHH--TTCCEEEEEEEEECCCCGGGCSS--SCCSEEEEEEEEEETCCH------HHHHHHHHHHHHHH
T ss_pred Hhh--cCccceEEEEccEeCCCCCCCCC--ccccceeEEEEEecCCCH------HHHHHHHHHHHHHH
Confidence 211 13789999999999999873237 888 99999999988751 24444444444443
No 50
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.85 E-value=1.3e-08 Score=109.61 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=77.7
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.-.+++..|.+.+++.|..+||.+|.||+|+.. .++. ..++|.+ +..|+.++|+-..+-....++. .
T Consensus 132 ~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~-----~~e~---~~~~f~~-~~~~~~~~L~~Spql~~~~~~~-g--- 198 (429)
T 1wyd_A 132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIAS-----ATEG---GAQLFPV-IYFGKEAFLAQSPQLYKELMAG-V--- 198 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS-----CSST---TCCCCEE-EETTEEEEECSCCHHHHHHHHH-H---
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEECCEEEee-----CCCC---CceeEEE-ecCCceEEecCCcHHHHHHHHh-C---
Confidence 345789999999999999999999999999876 1111 2467776 4667889997333332222222 1
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceec-eeEEcceeeeeCc
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVR-GFTQDDAHIFCLE 406 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~R-EF~q~d~~ifg~~ 406 (653)
+-|+|++|+|||+|.++ .+ |-+ ||+|.|+|..+.+
T Consensus 199 ----~~rvf~ig~~FR~E~~~--~~--RH~pEFtqle~e~~~~~ 234 (429)
T 1wyd_A 199 ----VERVFEVAPAWRAEESD--TP--FHLAEFISMDVEMAFAD 234 (429)
T ss_dssp ----HSEEEEEEEEECCCCCC--SS--SCCSEEEEEEEEEETCC
T ss_pred ----cCceEEEcccccccCCc--cc--cccceeeEeeeeecCCC
Confidence 56999999999999987 67 888 9999999998765
No 51
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.83 E-value=1.5e-08 Score=109.35 Aligned_cols=102 Identities=11% Similarity=0.044 Sum_probs=77.3
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.-.+++..|.+.+++.|..+||.+|.||+|+.. .++. ..++|.+ +..|+.++|| .+..... ..+..
T Consensus 133 ~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~-----~~e~---~~~~f~~-~~~~~~~~Lr-~Spel~~----~~~~~ 198 (434)
T 1x54_A 133 AIMKVKETLIMAAREWLLKDGWHEVFPPILVTG-----AVEG---GATLFKL-KYFDKYAYLS-QSAQLYL----EAAIF 198 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESC-----CSSC---GGGCCEE-EETTEEEEEC-SCSHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee-----cCCC---CceeEEE-eecCCcEEec-cChHHHH----HHHhc
Confidence 456789999999999999999999999999865 2221 2467776 5667889999 2222211 11111
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceec-eeEEcceeeeeCc
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVR-GFTQDDAHIFCLE 406 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~R-EF~q~d~~ifg~~ 406 (653)
-|.|+|++|+|||+|.++ .+ |-+ ||+|.|+|..+.+
T Consensus 199 ---g~~rvf~ig~~FR~E~~~--~~--RH~pEFtqle~e~~~~~ 235 (434)
T 1x54_A 199 ---GLEKVWSLTPSFRAEKSR--TR--RHLTEFWHLELEAAWMD 235 (434)
T ss_dssp ---HHSEEEEEEEEECCCCCC--CS--SCCSEEEEEEEEEETCC
T ss_pred ---CccceEEEecceecCCCC--Cc--ccccEEEEeeEEEcCCC
Confidence 267999999999999987 67 888 9999999998765
No 52
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.75 E-value=1.7e-08 Score=108.45 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=48.3
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.-.+++..|.+.+++.|..+||.+|.||+|+... ++. ..++|.+ +..|+.++|+-..+-.. ..+..
T Consensus 123 ~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~----~e~----~~~~f~~-~~~g~~~~L~~Spel~~-~~l~~---- 188 (422)
T 1n9w_A 123 APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG----AEG----GSGLFGV-DYFEKRAYLAQSPQLYK-QIMVG---- 188 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCC-------------------------------------CHHHH-HHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeC----CCC----CceeEEE-eeCCCcEEeeeCHHHHH-HHHhh----
Confidence 3457899999999999999999999999998761 111 2356765 45577899973222222 22221
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceec-eeEEcceeeeeC
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVR-GFTQDDAHIFCL 405 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~R-EF~q~d~~ifg~ 405 (653)
. +-|+|++|+|||+|.++ .| |-+ ||+|.|+|..+.
T Consensus 189 --g-~~rvf~ig~~FR~E~~~--~~--RH~pEFtqle~e~~~~ 224 (422)
T 1n9w_A 189 --V-FERVYEVAPVWRMEEHH--TS--RHLNEYLSLDVEMGFI 224 (422)
T ss_dssp --H-HSEEEEEEEC-----------------CCEEEEEEEESC
T ss_pred --C-CCceeEEeCceECCCCC--CC--cccceeEEeeeeeeCC
Confidence 1 35999999999999987 67 888 999999999886
No 53
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=98.74 E-value=6.3e-08 Score=105.96 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=84.0
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.-.+++..|.+.+++.|..+||.+|.||+|+..+ ++. ..++|.+. ..|+.++|+-..+- +.+.+..
T Consensus 176 ~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~----~~~----ga~~f~~~-~~~~~~~L~~Spql-----~~k~l~~ 241 (487)
T 1eov_A 176 AIFRIQAGVCELFREYLATKKFTEVHTPKLLGAP----SEG----GSSVFEVT-YFKGKAYLAQSPQF-----NKQQLIV 241 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----SSS----SSCCCEEE-ETTEEEEECSCTHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec----CCC----Ccccceec-cCCccEEcccChHH-----HHHHHHh
Confidence 4567899999999999999999999999998864 211 23577763 46889999932222 2222111
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceec-eeEEcceee-eeC-chhHHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVR-GFTQDDAHI-FCL-EDQIKDEIRAVLDL 419 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~R-EF~q~d~~i-fg~-~~~~~d~~~e~l~~ 419 (653)
.-+-|+||+|+|||+|.++ .+ |.+ ||+|.|+|. |+. .+...+..++++..
T Consensus 242 --~g~~rvy~ig~~FR~E~~~--~~--Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~ 294 (487)
T 1eov_A 242 --ADFERVYEIGPVFRAENSN--TH--RHMTEFTGLDMEMAFEEHYHEVLDTLSELFVF 294 (487)
T ss_dssp --TTCCEEEEEEEEECCCCCC--CT--TCCSEEEEEEEEEECSSCTHHHHHHHHHHHHH
T ss_pred --cCCCceEEEeccEecCCCC--CC--ccchhhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 1256999999999999987 67 988 999999997 875 35555555555543
No 54
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.70 E-value=8.2e-08 Score=105.05 Aligned_cols=116 Identities=19% Similarity=0.128 Sum_probs=82.2
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceec-ccCCceEEeccCChHHHHHHHHhhhc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM-NIEDELYQLRPMNCPYHILVYQRKLQ 362 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~-d~~~~~l~LrP~~~~~~~~~~~~~~~ 362 (653)
.-.+++..|.+.+++.|..+||.+|.||+|.+. .++. ..++|.+. +..|..++||-..+ +|.+.+.
T Consensus 172 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~-----~~Ga---~a~~F~~~~~~~~~~~yLr~Spq-----Lylk~l~ 238 (493)
T 3a74_A 172 KTFITRSLIIQSMRRYLDSHGYLEVETPMMHAV-----AGGA---AARPFITHHNALDMTLYMRIAIE-----LHLKRLI 238 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS-----CCSS---SSCCCEEEETTTTEEEEECSCSH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEECCeEEec-----CCCC---cccceEecccCCCceeEEecCHH-----HHHHHHh
Confidence 345789999999999999999999999999865 2221 23567664 56788999993222 2333221
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCc-hhHHHHHHHHHH
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE-DQIKDEIRAVLD 418 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~-~~~~d~~~e~l~ 418 (653)
. .-.-|+|++|+|||+|.+. .. |..||||.|+|....+ +...+..++++.
T Consensus 239 v--~G~~rVyeig~~FR~E~~~--~r--H~pEFT~lE~e~af~d~~dlm~l~E~ll~ 289 (493)
T 3a74_A 239 V--GGLEKVYEIGRVFRNEGIS--TR--HNPEFTMLELYEAYADFRDIMKLTENLIA 289 (493)
T ss_dssp H--TTCCEEEEEEEEECCCCCB--TT--BCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred h--cccCceEEECccccCCCCC--cc--cCCceeEEEEEecCCCHHHHHHHHHHHHH
Confidence 1 1245999999999999987 46 9999999999987654 334443334333
No 55
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=98.56 E-value=3.6e-07 Score=100.17 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=79.4
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceec-ccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM-NIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~-d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
-.+++.+|.+.+|+.|...||.+|.||+|.+. .++. ..++|.+. +..|..++||-..+ +|.+.+..
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~-----~~Ga---~ar~F~t~~~~~~~~~yL~~Spq-----Lylk~L~v 248 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI-----PGGA---SARPFITHHNALDLDMYLRIAPE-----LYLKRLVV 248 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESS-----CCSS---CCCCCEEEETTTTEEEEECSCSH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEec-----CCCC---cccceEeccCCCCceEEeccCHH-----HHHHHHhh
Confidence 45789999999999999999999999999854 2221 13456553 45678899984323 23222211
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCc-hhHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE-DQIKDEIRAVLD 418 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~-~~~~d~~~e~l~ 418 (653)
. -.-|+|++|+|||+|.+. .. +..||||.|+|....+ +...+..++++.
T Consensus 249 ~--G~~rVyeIg~~FR~E~~~--~r--H~pEFt~lE~e~af~d~~dlm~l~E~li~ 298 (504)
T 1e1o_A 249 G--GFERVFEINRNFRNEGIS--VR--HNPEFTMMELYMAYADYHDLIELTESLFR 298 (504)
T ss_dssp H--TCCEEEEEEEEECCCCCC--C---CCSEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred c--CCCcEEEEcccccCCCCC--cc--ccCceeeeeeeecCCCHHHHHHHHHHHHH
Confidence 0 124999999999999987 45 9999999999986554 444444344443
No 56
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.43 E-value=9.1e-07 Score=92.47 Aligned_cols=121 Identities=15% Similarity=0.078 Sum_probs=79.5
Q ss_pred cCcc----ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceec--c---cCCceEEeccCChH
Q 046808 281 WHPK----GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM--N---IEDELYQLRPMNCP 351 (653)
Q Consensus 281 ~lP~----g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~--d---~~~~~l~LrP~~~~ 351 (653)
|.|. -.+++..|.+.+|+.|...||.+|.||+|.+.. +. +. ....|++. + ..+..++|+-..+-
T Consensus 27 ~~~~~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~-----~~-~a-~~~~F~~~~~~~~~~~~~~~yL~~Spql 99 (345)
T 3a5y_A 27 WQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQAT-----VT-DI-HLVPFETRFVGPGHSQGMNLWLMTSPEY 99 (345)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CC-CT-TCCCCEEEECCSTTSCCEEEEECSCSHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecC-----CC-CC-ccceEEEEecCcccccCCCEeecCCHHH
Confidence 5554 457899999999999999999999999998653 11 11 12344431 1 12356778744333
Q ss_pred HHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCc-hhHHHHHHHHHHH
Q 046808 352 YHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE-DQIKDEIRAVLDL 419 (653)
Q Consensus 352 ~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~-~~~~d~~~e~l~~ 419 (653)
..-+++... + =|+||+|+|||+|.+. .. +..||||.|+|.-..+ +...+..++++..
T Consensus 100 ~~k~l~~~g------~-~rvyqIg~~FR~E~~~--~r--H~pEFt~lE~e~af~d~~d~m~~~E~li~~ 157 (345)
T 3a5y_A 100 HMKRLLVAG------C-GPVFQLCRSFRNEEMG--RY--HNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ 157 (345)
T ss_dssp HHHHHHHTT------C-CSEEEEEEEECCCCCB--TT--BCSEEEEEEEEEETCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC------C-CcEEEEEcceeCCCCc--cc--ccchhheeeeeeeCCCHHHHHHHHHHHHHH
Confidence 322222221 2 2899999999999985 55 8999999999976543 4445544444443
No 57
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.27 E-value=9.1e-06 Score=88.25 Aligned_cols=145 Identities=11% Similarity=0.088 Sum_probs=97.8
Q ss_pred ccccHHHHHHHHHHHHHHHhcCCeEEec-CccCchh-hhhhc----Ccccccccccceecc-------------------
Q 046808 283 PKGSIVRHIIEDFWKKSHIEHDYDLLYT-PHVAKAD-LWKIS----GHLDFYRENMYDQMN------------------- 337 (653)
Q Consensus 283 P~g~~l~~~I~~~~~~~~~~~G~~~I~t-P~le~~~-l~~~s----g~~~~~~~~~y~~~d------------------- 337 (653)
+-...-.+.+.+.++++|...||+++.+ |.+++.. -|..- .|-..=..+.|.+.+
T Consensus 221 ~G~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~H 300 (508)
T 3l4g_A 221 SGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTH 300 (508)
T ss_dssp CCBCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhh
Confidence 3445567889999999999999999875 7776542 12211 121000011133322
Q ss_pred ----------------cCCceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEccee
Q 046808 338 ----------------IEDELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAH 401 (653)
Q Consensus 338 ----------------~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ 401 (653)
..++..+||+.+.|...+.+..+....+..|+|+|++|+|||+|... .. ++.+|+|.+..
T Consensus 301 e~g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~D--at--HlpeFhQlegl 376 (508)
T 3l4g_A 301 SQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLD--AT--HLAEFHQIEGV 376 (508)
T ss_dssp HTCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCC--SS--SCSEEEEEEEE
T ss_pred hccccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCC--CC--cCCeEEEEEEE
Confidence 12257899999999887777654322246899999999999999876 45 78899999998
Q ss_pred eeeCchhHHHHHHHHHHHHHHHHHHcCCCeEEEE
Q 046808 402 IFCLEDQIKDEIRAVLDLTEEILLQFGFNKYEVN 435 (653)
Q Consensus 402 ifg~~~~~~d~~~e~l~~~~~il~~lGl~~~~v~ 435 (653)
+.+.+-. +.++..+...+++.||+..+..+
T Consensus 377 ~~~~~v~----f~dLKg~Le~~l~~lG~~~~rfr 406 (508)
T 3l4g_A 377 VADHGLT----LGHLMGVLREFFTKLGITQLRFK 406 (508)
T ss_dssp EEEESCC----HHHHHHHHHHHHHTTTCCCCEEE
T ss_pred EECCCCC----HHHHHHHHHHHHHHcCCcceEee
Confidence 8764322 24577788889999998544444
No 58
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=98.20 E-value=6.5e-06 Score=88.90 Aligned_cols=115 Identities=14% Similarity=0.138 Sum_probs=78.2
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.-.+++.+|.+.+|+.|...||.+|.||+|..... .|+. ++|.. +--|+.++|+-...- |.+.+..
T Consensus 130 ~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~---eG~~-----~~F~~-~~~g~~~~L~~SpqL-----ylq~l~~ 195 (435)
T 2xgt_A 130 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV---EGGS-----TLFNL-DYFGEQSFLTQSSQL-----YLETCIP 195 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS---SCTT-----SCCEE-EETTEEEEECSCSHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC---CCch-----hceee-ccCCcccccCCChHH-----HHHHhhh
Confidence 45689999999999999999999999999976543 1322 24543 345778888743322 2222111
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceec-eeEEcceeeeeCc-hhHHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVR-GFTQDDAHIFCLE-DQIKDEIRAVLDL 419 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~R-EF~q~d~~ifg~~-~~~~d~~~e~l~~ 419 (653)
.+ =|+||+|+|||+|.+. .+ |-. ||||.|+|.-..+ +...+..++++..
T Consensus 196 --g~-~rvfeIg~~FR~E~~~--t~--RH~~EFT~lE~e~af~d~~d~m~~~E~li~~ 246 (435)
T 2xgt_A 196 --TL-GDVFCIAQSYRAEKSR--TR--RHLAEYAHVEAECPFITLDDLMEKIEELVCD 246 (435)
T ss_dssp --HH-CSEEEEEEEECCCSSC--CT--TCCSEEEEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred --cc-CceEEEecceecCCCC--cc--ccccceeEEEEEEecCCHHHHHHHHHHHHHH
Confidence 11 3899999999999975 34 656 9999999976544 4455554555543
No 59
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.19 E-value=1.4e-05 Score=87.22 Aligned_cols=85 Identities=16% Similarity=0.251 Sum_probs=66.4
Q ss_pred eEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCC-CCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHH
Q 046808 342 LYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLT 420 (653)
Q Consensus 342 ~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~-~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~ 420 (653)
..+|||+..|+....++.+. +.++.|+|+|++|+|||+|.. + .+ +.+||+|.++.+.|.+... .++..++
T Consensus 180 ~svLRTsLlPgLL~~lr~N~-~r~~~pvrLFEIG~VFr~d~~~d--~t--h~~Ef~qLagli~G~~vdf----~dLKgil 250 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIA-DKLPLPIKLFSIDRCFRREQGED--AT--RLYTYFSASCVLVDEELSV----DDGKAVA 250 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTT-TTSCSSEEEEEEEEEECCCTTCS--SS--CCSEEEEEEEEEECSSCCH----HHHHHHH
T ss_pred ccccCccchhhHHHHHHHHH-hCCCCCeeEEEEeeEEecCcccc--cc--ccceeeEEEEEEECCCCCH----HHHHHHH
Confidence 57899999998777766553 345789999999999998765 5 44 7799999999999974332 4577888
Q ss_pred HHHHHHcCCCeEEEE
Q 046808 421 EEILLQFGFNKYEVN 435 (653)
Q Consensus 421 ~~il~~lGl~~~~v~ 435 (653)
..+++.||+..+.+.
T Consensus 251 E~LL~~LGi~~~r~~ 265 (534)
T 2du3_A 251 EALLRQFGFENFRFR 265 (534)
T ss_dssp HHHHGGGTCCEEEEE
T ss_pred HHHHHHcCCCeEEEE
Confidence 999999998645444
No 60
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=98.17 E-value=7.8e-06 Score=88.10 Aligned_cols=116 Identities=14% Similarity=0.125 Sum_probs=78.9
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhccc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSY 364 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~ 364 (653)
-.+++..|...+|+.|...||.+|.||+|..... -|+. ++|.+. --|..++|+...+- +.+.+...
T Consensus 136 ~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~---eg~~-----~~f~~~-~~~~~~yL~~Spql-----~~q~l~~~ 201 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT---EGGT-----ELFPMK-YFEEDAFLAQSPQL-----YKQIMMAS 201 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS---SCSS-----SCCEEE-ETTEEEEECSCSHH-----HHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC---CCCc-----cceeEe-eCCccEEEecChHH-----HHHHHHhc
Confidence 4678999999999999999999999999977631 1332 345542 34677889754332 33322211
Q ss_pred CCCCcEEEEeeeeeecCCCCCCCCccee-ceeEEcceeeeeC--chhHHHHHHHHHHHH
Q 046808 365 RDFPIRVAELGTVYRYELSGSLHGLFRV-RGFTQDDAHIFCL--EDQIKDEIRAVLDLT 420 (653)
Q Consensus 365 ~~lP~rl~~~g~~fR~E~~~~~~GL~R~-REF~q~d~~ifg~--~~~~~d~~~e~l~~~ 420 (653)
. --|+|++|+|||+|.+. .+ |- -||+|.|+|.-.. -+...+..++++..+
T Consensus 202 -g-~~rvf~i~~~FR~E~~~--t~--RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~ 254 (438)
T 3nem_A 202 -G-LDRVYEIAPIFRAEEHN--TT--RHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHA 254 (438)
T ss_dssp -T-CCEEEEEEEEECCCSSC--CT--TCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHH
T ss_pred -C-CCceEEEcceEECCCCC--Cc--ccccceeeeeeeeccCccHHHHHHHHHHHHHHH
Confidence 1 24999999999999875 33 54 4999999997544 355555555555433
No 61
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=98.02 E-value=4.3e-05 Score=84.12 Aligned_cols=116 Identities=17% Similarity=0.093 Sum_probs=78.2
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceec-ccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM-NIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~-d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
-.+++..|...+|+.|...||.+|.||+|.+.. |+. ....|... +.-|..++|+-..+-..-+++..
T Consensus 175 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----gGa---~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~---- 242 (521)
T 3bju_A 175 KFIIRSKIITYIRSFLDELGFLEIETPMMNIIP-----GGA---VAKPFITYHNELDMNLYMRIAPELYHKMLVVG---- 242 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS---SCCCCEEEETTTTEEEEECSCSHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCceeeccC-----CCc---cccceeeecccCCcceEeeCCHHHHHHHHHhc----
Confidence 457889999999999999999999999997541 221 12334332 23477899985444322222222
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeee-CchhHHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFC-LEDQIKDEIRAVLDL 419 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg-~~~~~~d~~~e~l~~ 419 (653)
.+ =|+|++|+|||+|.... -+.-||||.|+|.-. +-+...+..++++..
T Consensus 243 --g~-~rVyeig~~FR~E~~~t----rH~pEFtmlE~e~af~d~~dlm~l~E~li~~ 292 (521)
T 3bju_A 243 --GI-DRVYEIGRQFRNEGIDL----THNPEFTTCEFYMAYADYHDLMEITEKMVSG 292 (521)
T ss_dssp --TC-CEEEEEEEEECCSCCBT----TBCSEEEEEEEEEETCCHHHHHHHHHHHHHH
T ss_pred --Cc-CceEEEEcceeCCCCCC----ccchhhhhhhhhhhcCCHHHHHHHHHHHHHH
Confidence 12 28999999999998762 278899999999754 435555554555443
No 62
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=98.00 E-value=2.8e-05 Score=85.24 Aligned_cols=115 Identities=17% Similarity=0.030 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCccccccccccee-cccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQ-MNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~-~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
-.+++.+|...+|+.|...||.+|.||+|.+. -|+.. ...|.. .+.-+.+++|+-..+-..-+++...
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~-----~gGA~---a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G--- 271 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPI-----PGGAA---AKPFVTHHNALDMEMFLRIAPELYLKRLIVGG--- 271 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS-----CCSSS---SCCCEEEETTTTEEEEECSCSHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeecc-----CCCCc---ccccccccccCCcceecccCHHHHHHHHHhcC---
Confidence 45789999999999999999999999999744 12211 123332 1234678888744332222222221
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee-eCchhHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF-CLEDQIKDEIRAVLD 418 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if-g~~~~~~d~~~e~l~ 418 (653)
+ =|+|++|+|||+|... .- +.-||||.|+|.- .+-+...+..++++.
T Consensus 272 ---~-~rVyeIg~~FR~E~~~--~r--H~pEFtmlE~e~af~d~~dlm~l~E~li~ 319 (529)
T 4ex5_A 272 ---F-ERVFEINRNFRNEGVS--PR--HNPEFTMMEFYAAYTDYRWLMDFTERLIR 319 (529)
T ss_dssp ---C-SEEEEEEEEECCSCCB--TT--BCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred ---C-CcEEEeehheecCCCC--CC--cccHhHhhhhhhhcCCHHHHHHHHHHHHH
Confidence 2 3999999999999876 22 7889999999974 444555555455544
No 63
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=97.97 E-value=4.5e-05 Score=85.23 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc--cCCceEEeccCChHHHHHHHHhhhc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN--IEDELYQLRPMNCPYHILVYQRKLQ 362 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d--~~~~~l~LrP~~~~~~~~~~~~~~~ 362 (653)
-.+++.+|...+|+.|...||.+|.||+|.... .++. + + |.+.. ..+.-++|+- +.+. |++.+.
T Consensus 137 ~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~----~eGA---r-~-F~v~~~~~~~~~y~L~q-SPQl----~kq~Lm 202 (585)
T 1c0a_A 137 RLKTRAKITSLVRRFMDDHGFLDIETPMLTKAT----PEGA---R-D-YLVPSRVHKGKFYALPQ-SPQL----FKQLLM 202 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCC----SSSS---C-C-CEEECSSSTTCEEECCS-CSHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCC----CCCC---c-c-ceecccccCCceEeCcc-CHHH----HHHHHH
Confidence 457899999999999999999999999997542 1111 1 1 33211 2345566763 2222 333211
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceee-eeCchhHHHHHHHHHHHH
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRAVLDLT 420 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~i-fg~~~~~~d~~~e~l~~~ 420 (653)
. ..+ =|+||+|+|||+|... .- |-=||||.|+|. |.+-+...+..++++..+
T Consensus 203 v-~G~-~rvfqI~~~FR~E~~~--t~--r~pEFT~lE~e~af~d~~dvm~~~E~li~~i 255 (585)
T 1c0a_A 203 M-SGF-DRYYQIVKCFRDEDLR--AD--RQPEFTQIDVETSFMTAPQVREVMEALVRHL 255 (585)
T ss_dssp H-TTC-CEEEEEEEEECCCCCB--TT--BCSEEEEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred h-cCC-CceEEEeceeecCCCC--CC--cCcccceeeeeecCCCHHHHHHHHHHHHHHH
Confidence 1 112 2999999999999976 33 666999999996 455455666555555433
No 64
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=97.96 E-value=4.7e-05 Score=84.83 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc--cCCceEEeccCChHHHHHHHHhhhc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN--IEDELYQLRPMNCPYHILVYQRKLQ 362 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d--~~~~~l~LrP~~~~~~~~~~~~~~~ 362 (653)
-.+++.+|...+|+.|...||.+|.||+|..... ++. + + |.... ..+.-|+|+- +.+. |++.+.
T Consensus 143 ~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~----eGA---r-~-F~v~~~~~~~~~y~L~q-SPQl----~kq~Lm 208 (580)
T 1l0w_A 143 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP----EGA---R-D-FLVPYRHEPGLFYALPQ-SPQL----FKQMLM 208 (580)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS----SSS---C-C-CEEECTTSTTEEEECCS-CSHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC----CCC---C-C-ccccccccCCceeECcc-CHHH----HHHHHH
Confidence 4578999999999999999999999999975421 111 1 1 33211 2344566763 2222 333211
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee-eCchhHHHHHHHHHHHH
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF-CLEDQIKDEIRAVLDLT 420 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if-g~~~~~~d~~~e~l~~~ 420 (653)
. ..+ =|+||+|+|||+|... .- |-=||||.|+|.- .+-+...+..++++..+
T Consensus 209 v-~G~-~rvfqI~~~FR~E~~~--~~--r~pEFT~lE~e~af~d~~dvm~~~E~li~~i 261 (580)
T 1l0w_A 209 V-AGL-DRYFQIARCFRDEDLR--AD--RQPDFTQLDLEMSFVEVEDVLELNERLMAHV 261 (580)
T ss_dssp H-TTC-SEEEEEEEEECCCCCC--SS--CCSEEEEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred H-hcc-CCeEEEeceeeCCCCC--CC--cCCCccceeeeecCCCHHHHHHHHHHHHHHH
Confidence 1 112 2999999999999986 33 6669999999964 44455555545554433
No 65
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=97.92 E-value=6.7e-05 Score=83.54 Aligned_cols=107 Identities=19% Similarity=0.153 Sum_probs=70.7
Q ss_pred ccHHHHHHHHHHHHHHH-hcCCeEEecCccCchhhhhhcCcccccccccceec-ccCCceEEeccCChHHHHHHHHhhhc
Q 046808 285 GSIVRHIIEDFWKKSHI-EHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQM-NIEDELYQLRPMNCPYHILVYQRKLQ 362 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~-~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~-d~~~~~l~LrP~~~~~~~~~~~~~~~ 362 (653)
-.+++..|...+|+.|. ..||.+|.||+|.... .++.. -|.+. ...|..++|+-...-..-.+...
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st----~~GA~-----~F~v~~~~~g~~~~L~qSpql~kq~l~v~--- 214 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT----PGGAK-----EFLVPSREPGKFYSLPQSPQQFKQLLMVG--- 214 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC----CSSSC-----CCEEECSSTTCEEECCSSTTHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC----CCCCc-----CceeccccCCcccccccCHHHHHHHHHhc---
Confidence 46899999999999996 7999999999997531 12211 13321 12366778864332222121211
Q ss_pred ccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee-eCchhHHH
Q 046808 363 SYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF-CLEDQIKD 411 (653)
Q Consensus 363 s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if-g~~~~~~d 411 (653)
.+ =|+||+|+|||+|... .- |.-||||.|+|.- .+-+...+
T Consensus 215 ---g~-~rvfqi~~~FR~E~~~--t~--r~pEFt~lE~e~af~d~~d~m~ 256 (617)
T 4ah6_A 215 ---GL-DRYFQVARCYRDEGSR--PD--RQPEFTQIDIEMSFVDQTGIQS 256 (617)
T ss_dssp ---SC-SEEEEEEEEECCCSSC--SS--SCSEEEEEEEEEESCCHHHHHH
T ss_pred ---cc-CcEEEEEhheecccCC--CC--cCcceecceeeecCCCHHHHHH
Confidence 12 2999999999999876 44 8899999999974 44333444
No 66
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=97.88 E-value=0.00012 Score=76.42 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=89.6
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchh-hhhhc----CcccccccccceecccC-----------CceEEeccC
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKAD-LWKIS----GHLDFYRENMYDQMNIE-----------DELYQLRPM 348 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~-l~~~s----g~~~~~~~~~y~~~d~~-----------~~~l~LrP~ 348 (653)
+..-.+.+.+.+++.|...||.++.+|.+++.. .|..- .|-..-..+.|.+.... .+..+||+.
T Consensus 99 ~~hp~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~ 178 (350)
T 1b7y_A 99 GLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTH 178 (350)
T ss_dssp BCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSS
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeecc
Confidence 344578889999999999999999999997753 22221 11100002234443221 266789998
Q ss_pred ChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHc-
Q 046808 349 NCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQF- 427 (653)
Q Consensus 349 ~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~l- 427 (653)
+.|...+.... ...|+|+|++|+|||+|....+ ...||+|.+..+.|.+-.. ..+......+++.+
T Consensus 179 tsp~llr~l~~-----~~~piriFEiGrVFR~d~~d~t----H~pEF~qlegl~~g~~v~f----~dLKg~le~ll~~lf 245 (350)
T 1b7y_A 179 TSPMQVRYMVA-----HTPPFRIVVPGRVFRFEQTDAT----HEAVFHQLEGLVVGEGIAM----AHLKGAIYELAQALF 245 (350)
T ss_dssp STHHHHHHHHH-----CCSSEEEEEEEEEECCCCCCSS----CCSEEEEEEEEEEETTCCH----HHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHh-----cCCCeeEEEeeeEEECCCCCCC----CCChhHEEEEEEECCCCCH----HHHHHHHHHHHHhhc
Confidence 88877666554 2579999999999998753311 4579999999999874322 34566777788877
Q ss_pred CC
Q 046808 428 GF 429 (653)
Q Consensus 428 Gl 429 (653)
|.
T Consensus 246 G~ 247 (350)
T 1b7y_A 246 GP 247 (350)
T ss_dssp CS
T ss_pred CC
Confidence 86
No 67
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.87 E-value=0.00017 Score=73.72 Aligned_cols=131 Identities=11% Similarity=0.123 Sum_probs=89.1
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhh-hhhcCc-cccc---ccccceecccCCceEEeccCChHHHHHHHHh
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADL-WKISGH-LDFY---RENMYDQMNIEDELYQLRPMNCPYHILVYQR 359 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l-~~~sg~-~~~~---~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~ 359 (653)
+..-.+.+.+.+++.+...||.|+.+|.+.+... |..... .+.- ..+.+.+. +..+||+.+.|........
T Consensus 51 ~~~~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~----e~~vLRtsl~p~ll~~l~~ 126 (294)
T 2rhq_A 51 SKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT----DEILMRTHTSPVQARTMEK 126 (294)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS----SSEEECSSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc----CcceeeccCHHHHHHHHHh
Confidence 3445778899999999999999999998877532 222211 0100 01124432 5578999999988777766
Q ss_pred hhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHc-CCC
Q 046808 360 KLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQF-GFN 430 (653)
Q Consensus 360 ~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~l-Gl~ 430 (653)
+. .+.|+|+|++|+|||++..... ...||+|.+..+.|.+-.. ..+......+++.| |++
T Consensus 127 N~---~~~~~riFEiG~Vfr~d~~d~~----h~~Ef~~Le~~~~g~~~df----~dlKg~le~ll~~l~g~~ 187 (294)
T 2rhq_A 127 RN---GQGPVKIICPGKVYRRDSDDAT----HSHQFTQIEGLVVDKNIKM----SDLKGTLELVAKKLFGAD 187 (294)
T ss_dssp TT---TCSCEEEEEEEEEECCCCCBTT----BCSEEEEEEEEEEESSCCH----HHHHHHHHHHHHHHHCTT
T ss_pred cC---CCCCccEEEEcCEEecCCCCCC----CCChhhEEEEEEECCCCCH----HHHHHHHHHHHHHHhCCC
Confidence 54 3679999999999997642211 3469999999999864222 34566777777777 873
No 68
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=97.84 E-value=6.5e-05 Score=81.31 Aligned_cols=115 Identities=13% Similarity=0.147 Sum_probs=74.0
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcc
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
.-.+++..|...+|+.|...||.+|.||+|.....- |+. ++|.+ +--|..++|+-...- |.+.+..
T Consensus 154 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~e---Gg~-----~~f~~-~~~~~~~~L~~SpqL-----~lq~l~~ 219 (456)
T 3m4p_A 154 QVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCE---GGS-----TLFKL-QYFNEPAYLTQSSQL-----YLESVIA 219 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC---------C-----CCCEE-EETTEEEEECSCCHH-----HHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCC---Ccc-----ccccc-cccCCCcccccCHHH-----HHHHHHh
Confidence 346789999999999999999999999999665321 222 23442 334677888754332 2222111
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCccee-ceeEEcceeeee-CchhHHHHHHHHHHH
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRV-RGFTQDDAHIFC-LEDQIKDEIRAVLDL 419 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~-REF~q~d~~ifg-~~~~~~d~~~e~l~~ 419 (653)
.+ -|+|++|+|||+|.+.. . |- -||||.|+|.-. +-+...+..++++..
T Consensus 220 --g~-~rVyeig~~FR~E~~~t--~--rH~pEFtmlE~e~af~d~~d~m~~~E~li~~ 270 (456)
T 3m4p_A 220 --SL-GKSFCMLSSYRAEQSRT--V--RHLAEYLHLEAELPFISFEDLLNHLEDLVCT 270 (456)
T ss_dssp --HH-SSEEEEEEEECCCSCCC--S--SCCSEEEEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred --cc-CcEEEEEhheecCCCCC--C--cchHHHHHhHHHHhcCCHHHHHHHHHHHHHH
Confidence 12 38999999999998641 1 32 399999999754 445555554555543
No 69
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.78 E-value=0.00011 Score=80.85 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=68.5
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhccc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSY 364 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~ 364 (653)
-.+++..|...+|+.|...||.+|.||+|..... -|+.+ .|.+ +--+..++|+-...-..-.++..
T Consensus 243 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---egga~-----~F~v-~~~~~~~yL~~Spql~~k~ll~~----- 308 (548)
T 3i7f_A 243 IFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS---EGGSN-----IFEV-KYFDRKAYLAQSPQLYKQMAIMG----- 308 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSBC----------------------------CCBCSCTHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC---CCCcc-----eeEE-ecCCCceEeccCHHHHHHHHHhc-----
Confidence 4578999999999999999999999999987741 12222 3332 22244566764322221122211
Q ss_pred CCCCcEEEEeeeeeecCCCCCCCCcce-eceeEEcceee-eeC-chhHHHHHHHHHHHH
Q 046808 365 RDFPIRVAELGTVYRYELSGSLHGLFR-VRGFTQDDAHI-FCL-EDQIKDEIRAVLDLT 420 (653)
Q Consensus 365 ~~lP~rl~~~g~~fR~E~~~~~~GL~R-~REF~q~d~~i-fg~-~~~~~d~~~e~l~~~ 420 (653)
.+ =|+|++|+|||+|.+.. . | .-||+|.|+|. |+. -+...+..++++..+
T Consensus 309 -g~-~rVfeI~~~FR~E~~~t--~--RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i 361 (548)
T 3i7f_A 309 -DF-RKVFEVGPVFRAENSNT--R--RHLTEFEGLDIEMEIVENYHECIDVMEKLFTFI 361 (548)
T ss_dssp -TC-CEEEEEEEECCCSCCCS--S--SCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHH
T ss_pred -Cc-CcEEEEeeeEecCCCCC--C--CcchhhhchhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 12 49999999999998641 1 2 35999999995 764 466666555555433
No 70
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=97.65 E-value=1.9e-06 Score=71.63 Aligned_cols=50 Identities=12% Similarity=-0.047 Sum_probs=44.9
Q ss_pred cccccCCCCCcccccCcccccccccCCCCeEEEeecCChHHHHHHHHHHH
Q 046808 49 TSVATEPAETPSVTQNGKVEQAQMTSETEKVVLPTNESNEQLLRIRHTCA 98 (653)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~~hS~~ 98 (653)
++...+..++++.+||++||++++++.|++|++++..+.+|+.+||||++
T Consensus 38 i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~vt~~~~eg~~i~rHS~~ 87 (88)
T 1wwt_A 38 ISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYSGPSS 87 (88)
T ss_dssp SSTTTGGGCCCEEESSSEECSSSCCCSSEEEEECSSCCSCCSCSCCCCSC
T ss_pred hhhccccceEEEEECCEEECCCcCcCCCCEEEEEeCCCHHHhhheeccCC
Confidence 44456677888999999999999999999999999999999999999974
No 71
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.63 E-value=0.00027 Score=77.11 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=61.4
Q ss_pred ceEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCC-CCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHH
Q 046808 341 ELYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDL 419 (653)
Q Consensus 341 ~~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~-~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~ 419 (653)
+..+||+.+.|++...++.+. +..+.|+|+|++|+|||.+.. . .. +.+||+|.++-+.|.+-. +..+...
T Consensus 191 e~svLRTsLlPGLL~~vr~N~-~r~~~pvrlFEiGrVFr~D~~~d--~t--h~~ef~qLaglv~G~~vd----F~DLKG~ 261 (549)
T 2du7_A 191 TTLTLRSHMTSGWFITLSSLI-KKRKLPLKLFSIDRCFRREQRED--RS--HLMSYHSASCVVVGEDVS----VDDGKVV 261 (549)
T ss_dssp EEEECCSTTHHHHHHHHHTTT-TTSCSSEEEEEEEEECCCCSSCS--SS--CCSCEEEEEEEEECTTCC----HHHHHHH
T ss_pred cccccccccchhHHHHHHHHH-hcCCCCeEEEEEeeEEecCCccc--Cc--CCCcceEEEEEEECCCCC----HHHHHHH
Confidence 457899999997766665543 334789999999999997653 3 22 568999999999996422 2467788
Q ss_pred HHHHHHHcCCC
Q 046808 420 TEEILLQFGFN 430 (653)
Q Consensus 420 ~~~il~~lGl~ 430 (653)
...+++.||+.
T Consensus 262 Le~ll~~LGi~ 272 (549)
T 2du7_A 262 AEGLLAQFGFT 272 (549)
T ss_dssp HHHHHGGGTCC
T ss_pred HHHHHHHcCCC
Confidence 88899999984
No 72
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=97.33 E-value=0.0032 Score=61.05 Aligned_cols=141 Identities=9% Similarity=0.138 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc-cCCceEEeccCChHHHHHHHHhhhcccCCC
Q 046808 289 RHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN-IEDELYQLRPMNCPYHILVYQRKLQSYRDF 367 (653)
Q Consensus 289 ~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~~s~~~l 367 (653)
.+++.+.+++.+...||+|+.|-.|.+.+.+..-+..+ .+...++.. ...+.-+||++.-|+.....+.+. +.+.-
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~--~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~-~r~~~ 82 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYP--SKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNA-NRKNA 82 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSC--GGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccC--cCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHh-cCCCC
Confidence 45788899999999999999999999887665432211 122333322 234556799999998877776654 22345
Q ss_pred CcEEEEeeeeeecCCCCC----CCCcceeceeEEcceeeeeCc--------hhHHHHHHHHHHHHHHHHHHcCCC--eEE
Q 046808 368 PIRVAELGTVYRYELSGS----LHGLFRVRGFTQDDAHIFCLE--------DQIKDEIRAVLDLTEEILLQFGFN--KYE 433 (653)
Q Consensus 368 P~rl~~~g~~fR~E~~~~----~~GL~R~REF~q~d~~ifg~~--------~~~~d~~~e~l~~~~~il~~lGl~--~~~ 433 (653)
++|+|++|+||+.+.... ..+ ..+|..+..+-+.|.. ....|. ..+......++..||++ .+.
T Consensus 83 ~v~lFEiG~Vf~~~~~~~~~~~~~~--~~~e~~~la~~~~G~~~~~~w~~~~~~~df-~dlKg~ve~ll~~lg~~~~~~~ 159 (213)
T 3ig2_A 83 DLKFFEFGNCYHFDAEKKNPEKVLA--PYSEDYHLGLWVTGKMVSNSWAHADENTSV-YELKAYVENIFKRLGLDLHSLV 159 (213)
T ss_dssp CCEEEEEEEEEEECC------------CEEEEEEEEEEEEEEECCSCC----CHHHH-HHHHHHHHHHHHHTTBCGGGCE
T ss_pred CeeEEEeeeEEecCccccccccccc--ccchhHEEEEEEECCCccccCCCCCCCcCH-HHHHHHHHHHHHHhCCCccceE
Confidence 699999999999764210 012 3577777777666632 234454 57888899999999995 344
Q ss_pred EE
Q 046808 434 VN 435 (653)
Q Consensus 434 v~ 435 (653)
+.
T Consensus 160 ~~ 161 (213)
T 3ig2_A 160 VG 161 (213)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 73
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.30 E-value=0.0018 Score=71.17 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=61.4
Q ss_pred eEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCC-CCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHH
Q 046808 342 LYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLT 420 (653)
Q Consensus 342 ~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~-~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~ 420 (653)
.-+||+.+.|++...++.+. +..+.|+|+|++|+|||.+.. . .. ...||.|.++-+.|.+-.. ..+....
T Consensus 199 ~sVLRTsLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lD--at--h~~Ef~qLeGlv~G~~vdF----~DLKGvL 269 (648)
T 2odr_B 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKED--KS--HLMTYHSASCAIAGEGVDI----NDGKAIA 269 (648)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCC--SS--CCSEEEEEEEEEECTTCCH----HHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hcCCCCeEEEEEeeEEecCcccc--cc--CCCcceEEEEEEECCCCCH----HHHHHHH
Confidence 46899999997665555443 234789999999999997653 2 11 3489999999999873322 4567788
Q ss_pred HHHHHHcCCCeEEEE
Q 046808 421 EEILLQFGFNKYEVN 435 (653)
Q Consensus 421 ~~il~~lGl~~~~v~ 435 (653)
..+++.||+..+.++
T Consensus 270 E~LL~~LGi~~vrfr 284 (648)
T 2odr_B 270 EGLLSQFGFTNFKFI 284 (648)
T ss_dssp HHHHHTTTCCCEEEE
T ss_pred HHHHHHcCCCeEEEE
Confidence 888999998544443
No 74
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.29 E-value=0.0019 Score=71.12 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=61.4
Q ss_pred eEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCC-CCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHH
Q 046808 342 LYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLT 420 (653)
Q Consensus 342 ~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~-~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~ 420 (653)
.-+||+.+.|++...++.+. +..+.|+|+|++|+|||.+.. . .. ...||.|.++-+.|.+-.. ..+....
T Consensus 199 ~sVLRTSLlPGLL~~lr~N~-~R~~~pvRLFEIGrVFR~D~~lD--at--h~~Ef~qLeGlv~G~~vdF----~DLKGvL 269 (665)
T 2odr_A 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKED--KS--HLMTYHSASCAIAGEGVDI----NDGKAIA 269 (665)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCC--SS--CCSEEEEEEEEEECTTCCH----HHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hcCCCCeEEEEEeeEEecCcccc--cc--CCCcceEEEEEEECCCCCH----HHHHHHH
Confidence 46899999997665555443 234789999999999997653 2 11 3489999999999873322 4567788
Q ss_pred HHHHHHcCCCeEEEE
Q 046808 421 EEILLQFGFNKYEVN 435 (653)
Q Consensus 421 ~~il~~lGl~~~~v~ 435 (653)
..+++.||+..+.++
T Consensus 270 E~LL~~LGi~~vrfr 284 (665)
T 2odr_A 270 EGLLSQFGFTNFKFI 284 (665)
T ss_dssp HHHHHTTTCCCEEEE
T ss_pred HHHHHHcCCCeEEEE
Confidence 888999998544443
No 75
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.28 E-value=0.002 Score=71.10 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=61.5
Q ss_pred eEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCC-CCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHH
Q 046808 342 LYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLT 420 (653)
Q Consensus 342 ~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~-~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~ 420 (653)
.-+||+.+.|++...++.+. +..+.|+|+|++|+|||.+.. . .. ...||.|.++-+.|.+-.. ..+....
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lD--at--h~~Ef~qLeGlv~G~~vDF----~DLKGvL 269 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKED--KS--HLMTYHSASCAIAGEGVDI----NDGKAIA 269 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCC--SS--CCSEEEEEEEEEECTTCCH----HHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hCCCCCeEEEEeccEEecCcccc--cc--CCCcceEEEEEEECCCCCH----HHHHHHH
Confidence 46899999997665555443 234789999999999997653 2 11 3489999999999873322 4567788
Q ss_pred HHHHHHcCCCeEEEE
Q 046808 421 EEILLQFGFNKYEVN 435 (653)
Q Consensus 421 ~~il~~lGl~~~~v~ 435 (653)
..+++.||+..+.++
T Consensus 270 E~LL~~LGi~~vrfr 284 (685)
T 2odr_D 270 EGLLSQFGFTNFKFI 284 (685)
T ss_dssp HHHHHTTTCCCEEEE
T ss_pred HHHHHHcCCCeEEEE
Confidence 888999998544444
No 76
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=97.27 E-value=0.0045 Score=60.07 Aligned_cols=141 Identities=13% Similarity=0.162 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc-cCCceEEeccCChHHHHHHHHhhhcccCCC
Q 046808 289 RHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN-IEDELYQLRPMNCPYHILVYQRKLQSYRDF 367 (653)
Q Consensus 289 ~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~~s~~~l 367 (653)
.+++.+.+++.+...||+|+.|-.|.+.+.+..-+..+ .+...++.. ...+.-+||++.-|+....++.+. +.+.-
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~--~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~-~r~~~ 82 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHP--REMAVELMNPLSQELNCMRQTLLFGGLETLSHNL-RRKHL 82 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSC--GGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHH-TTTCS
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccC--cCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHH-cCCCC
Confidence 56788999999999999999999999887665432211 122233322 345567899999998877776654 22334
Q ss_pred CcEEEEeeeeeecCCCCC----CCCcceeceeEEcceeeeeCc--------hhHHHHHHHHHHHHHHHHHHcCCC--eEE
Q 046808 368 PIRVAELGTVYRYELSGS----LHGLFRVRGFTQDDAHIFCLE--------DQIKDEIRAVLDLTEEILLQFGFN--KYE 433 (653)
Q Consensus 368 P~rl~~~g~~fR~E~~~~----~~GL~R~REF~q~d~~ifg~~--------~~~~d~~~e~l~~~~~il~~lGl~--~~~ 433 (653)
++|+|++|+||+.+.... ..+ ..+|..+..+-+-|.. ....|. ..+...+..++..||++ .+.
T Consensus 83 ~~~lFEiG~Vf~~~~~~~~~~~~~~--~~~e~~~la~~~~G~~~~~~w~~~~~~~df-~d~Kg~ve~ll~~lgi~~~~~~ 159 (213)
T 3ica_A 83 SLYLFEWGKCYRFHAAKRTDETPLA--AYAEDDRLGIWICGQRVHNSWAHPEEPTSV-FELKAVVEQVLCRVGIETGAYT 159 (213)
T ss_dssp EEEEEEEEEEEEEECCCC--CCSSC--EEEEEEEEEEEEEEBCCC-----CCCBCCH-HHHHHHHHHHHHHTTCCGGGEE
T ss_pred CeeEEEeeeEEecCCcccccccccc--ccchhhEEEEEEeCCCCcccCCCCCCCcCH-HHHHHHHHHHHHHhCCCccceE
Confidence 599999999999754210 012 4578778777776642 122333 56778889999999995 355
Q ss_pred EE
Q 046808 434 VN 435 (653)
Q Consensus 434 v~ 435 (653)
+.
T Consensus 160 ~~ 161 (213)
T 3ica_A 160 LK 161 (213)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 77
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.27 E-value=0.0021 Score=71.03 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=61.5
Q ss_pred eEEeccCChHHHHHHHHhhhcccCCCCcEEEEeeeeeecCCC-CCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHH
Q 046808 342 LYQLRPMNCPYHILVYQRKLQSYRDFPIRVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLT 420 (653)
Q Consensus 342 ~l~LrP~~~~~~~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~-~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~ 420 (653)
.-+||+.+.|++...++.+. +..+.|+|+|++|+|||.+.. . .. ...||.|.++-+.|.+-.. ..+....
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lD--at--h~~EfhqLeGlv~G~~vDF----~DLKGvL 269 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKED--KS--HLMTYHSASCAIAGEGVDI----NDGKAIA 269 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCC--SS--CCSEEEEEEEEEECTTCCH----HHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hCCCCCeEEEEEeeEEccCcccc--cc--CCCcceEEEEEEECCCCCH----HHHHHHH
Confidence 56899999997665555443 234789999999999997653 2 11 3489999999999873322 4567788
Q ss_pred HHHHHHcCCCeEEEE
Q 046808 421 EEILLQFGFNKYEVN 435 (653)
Q Consensus 421 ~~il~~lGl~~~~v~ 435 (653)
..+++.||+..+.++
T Consensus 270 E~LL~~LGi~~vrfr 284 (701)
T 2odr_C 270 EGLLSQFGFTNFKFI 284 (701)
T ss_dssp HHHHHTTTCCCEEEE
T ss_pred HHHHHHcCCCeEEEE
Confidence 888999998544444
No 78
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.01 E-value=0.0089 Score=66.96 Aligned_cols=134 Identities=8% Similarity=0.048 Sum_probs=91.8
Q ss_pred cHHHHHHHHHHHHHHHhcCCeEEecCccCchhh-hhhcCcccccccccceecc-cCCceEEeccCChHHHHHHHHhhhcc
Q 046808 286 SIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADL-WKISGHLDFYRENMYDQMN-IEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 286 ~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l-~~~sg~~~~~~~~~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
..-.+++.+.+++.+...||+|+.|+.|.+.+. +..-+..+. ..+.+.+.. ...+.-+||++.-|+.....+.+..
T Consensus 390 ~~~~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~-~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~- 467 (589)
T 3l4g_B 390 QFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDIS-ATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRK- 467 (589)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTT-SSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTT-
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCC-CCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhc-
Confidence 344567788999999999999999999988763 332221111 122333332 2334468999999988877766543
Q ss_pred cCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 364 YRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 364 ~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
++.|+|+|++|+|||.+.... . ..+|+.|..+-+.|.... +..+-.....+++.||++
T Consensus 468 -~~~~vrlFEiG~Vf~~d~~~~-~---~~~e~~~la~~~~g~~~~----f~~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 468 -MPLPLKLFEISDIVIKDSNTD-V---GAKNYRHLCAVYYNKNPG----FEIIHGLLDRIMQLLDVP 525 (589)
T ss_dssp -SCSCEEEEEEEEEEEECTTST-T---SEEEEEEEEEEEESSSCC----HHHHHHHHHHHHHHTTCC
T ss_pred -CCCceEEEEeeeEEecCCccc-c---CCccccEEEEEEECCCCC----HHHHHHHHHHHHHHcCCC
Confidence 356999999999999765431 2 357888988877775432 234556777889999995
No 79
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=96.77 E-value=0.0029 Score=65.11 Aligned_cols=126 Identities=16% Similarity=0.119 Sum_probs=82.0
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchh-hhhhc----CcccccccccceecccCCceEEeccCChHHHHHHHH
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKAD-LWKIS----GHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQ 358 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~-l~~~s----g~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~ 358 (653)
.+..-.+.+.+.+++.|...||+++.+|.++... .|..- .|...-..+.|.+. +..+||..+.|...+...
T Consensus 104 G~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~----e~~vLRThtsp~~lr~l~ 179 (327)
T 3pco_A 104 GGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFD----TTRLLRTQTSGVQIRTMK 179 (327)
T ss_dssp CCCCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSS----SSCEECSCTHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeC----CCceecccCCHHHHHHHH
Confidence 3445677889999999999999999999885431 22111 11100001233332 457899999888766664
Q ss_pred hhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHc
Q 046808 359 RKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQF 427 (653)
Q Consensus 359 ~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~l 427 (653)
. .+.|+|++++|+|||.+. . .. .+.+|+|.+..+.+.+-.. ..+-.+...+++.|
T Consensus 180 ~-----~~~pirifeiGrVyR~d~-d--~t--h~p~fhqlegl~v~~~v~f----~dLKg~Le~~l~~l 234 (327)
T 3pco_A 180 A-----QQPPIRIIAPGRVYRNDY-D--QT--HTPMFHQMEGLIVDTNISF----TNLKGTLHDFLRNF 234 (327)
T ss_dssp T-----CCSSCCBCCEECCBCSCC-B--TT--BCSBCCEEEEEEEETTCCH----HHHHHHHHHHHHHH
T ss_pred h-----CCCCeeEEeeccEEecCC-C--cc--cCCcccEEEEEEECCCCCH----HHHHHHHHHHHHHH
Confidence 3 357999999999999873 2 22 5568999987776643322 34555666666666
No 80
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=96.38 E-value=0.019 Score=66.42 Aligned_cols=136 Identities=12% Similarity=0.010 Sum_probs=94.8
Q ss_pred cccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccc-cceecc-cCCceEEeccCChHHHHHHHHhhh
Q 046808 284 KGSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYREN-MYDQMN-IEDELYQLRPMNCPYHILVYQRKL 361 (653)
Q Consensus 284 ~g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~-~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~ 361 (653)
.+..-.+.+.+.+++.+...||+|+.|..|...+.+..-+ . ... .+.+.. ...+.-+||++.-|+.......+.
T Consensus 490 g~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~--~--~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~ 565 (795)
T 2rhq_B 490 GELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFA--L--QERPTISLLMPMSEAHATLRQSLLPHLIEATAYNV 565 (795)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTC--S--SCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhC--C--CCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHh
Confidence 3445578889999999999999999999888776552211 1 122 244432 233455899999998877776654
Q ss_pred cccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCch--------hHHHHHHHHHHHHHHHHHHcCCC
Q 046808 362 QSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLED--------QIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 362 ~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~--------~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
+..+.|+|+|++|+|||.+... .+ . +||.|..+-+.|... ...+ +..+......+++.||++
T Consensus 566 -~r~~~~vrlFEiG~Vf~~d~~~--~~--~-~e~~~la~l~~G~~~~~~w~~~~~~~d-F~dlKg~le~ll~~lG~~ 635 (795)
T 2rhq_B 566 -ARKNKDVRLYEIGRVFFGNGEG--EL--P-DEVEYLSGILTGEYVVNAWQGKKEEID-FFIAKGVVDRVAEKLNLE 635 (795)
T ss_dssp -HTTCCCEEEEEEEEEEECCCTT--SC--C-EEEEEEEEEEESEEEEEGGGTEEEECC-HHHHHHHHHHHHHHHTCC
T ss_pred -cCCCCCeEEEEEeeEEecCCcc--cC--c-chhhEEEEEEEeccccccccCCCCCCC-HHHHHHHHHHHHHHcCCc
Confidence 3346899999999999964322 12 3 899998888877541 1123 356778888899999984
No 81
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=95.42 E-value=0.054 Score=62.45 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=89.5
Q ss_pred ccHHHHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc-cCCceEEeccCChHHHHHHHHhhhcc
Q 046808 285 GSIVRHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN-IEDELYQLRPMNCPYHILVYQRKLQS 363 (653)
Q Consensus 285 g~~l~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~~s 363 (653)
+..-.+.+.+.+++.+...||+|+.|-.|...+.+..-+. ..+.+.+.. ...+.-+||++.-|+.....+.+. +
T Consensus 487 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~----~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~-~ 561 (785)
T 1b7y_B 487 GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRL----DPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENL-D 561 (785)
T ss_dssp STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTC----CCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHH-H
T ss_pred cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCC----CCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHh-h
Confidence 3445778899999999999999999888887765522111 122244432 234455899999998887777654 3
Q ss_pred cC-CCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCch-------hHHHHHHHHHHHHHHHHHHcCC
Q 046808 364 YR-DFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLED-------QIKDEIRAVLDLTEEILLQFGF 429 (653)
Q Consensus 364 ~~-~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~~-------~~~d~~~e~l~~~~~il~~lGl 429 (653)
.+ ..|+|+|++|+||| + +||.|..+-+.|... ...+. ..+......++..||+
T Consensus 562 r~~~~~vrlFEiG~Vf~-~-----------~e~~~lagl~~G~~~~~~w~~~~~vdf-~dlKg~le~ll~~lgi 622 (785)
T 1b7y_B 562 LDRPERALLFEVGRVFR-E-----------REETHLAGLLFGEGVGLPWAKERLSGY-FLLKGYLEALFARLGL 622 (785)
T ss_dssp HSCCSCEEEEEEEEEES-S-----------SEEEEEEEEEESSCBSCSSSSCCBCSH-HHHHHHHHHHHHHHTC
T ss_pred cCCCCCeEEEEEeeeec-c-----------ChhhEEEEEEECCCcccccCccCCcCH-HHHHHHHHHHHHHcCC
Confidence 34 57999999999999 2 578888877777541 11333 4677788888888888
No 82
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=94.09 E-value=0.67 Score=49.23 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHhc--------CCeEEec-CccCch-hhhhhcC----cccccccccceecccCCceEEeccCChHHH
Q 046808 288 VRHIIEDFWKKSHIEH--------DYDLLYT-PHVAKA-DLWKISG----HLDFYRENMYDQMNIEDELYQLRPMNCPYH 353 (653)
Q Consensus 288 l~~~I~~~~~~~~~~~--------G~~~I~t-P~le~~-~l~~~sg----~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~ 353 (653)
-...+.+.+++.|... ||+++.+ |.++.. ..|..-+ |-..-..+.|.+ ++..+||..+.|..
T Consensus 49 Pl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi----~~~~vLRThts~~~ 124 (415)
T 3cmq_A 49 PLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYL----NRTHMLRAHTSAHQ 124 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBS----SSSEEECSSGGGGH
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEe----cCCeEEcCCCcHHH
Confidence 3456666677777655 8999998 666543 2333222 210001223433 24578999888876
Q ss_pred HHHHHhhhcccCCCCcEEEEeeeeeecCCCCCCCCcceeceeEEcceeee
Q 046808 354 ILVYQRKLQSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIF 403 (653)
Q Consensus 354 ~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~if 403 (653)
.+..... .| |++.+|.|||.+... .. .+-+|+|.+.-.+
T Consensus 125 ~~~l~~~------~~-k~~~~G~VyR~D~~d--a~--h~n~fhQ~egv~l 163 (415)
T 3cmq_A 125 WDLLHAG------LD-AFLVVGDVYRRDQID--SQ--HYPIFHQLEAVRL 163 (415)
T ss_dssp HHHHHTT------CS-EEEEEEEEECCCCCB--TT--BCSEEEEEEEEEE
T ss_pred HHHHHHC------CC-CEEEeeeEEeccchh--hh--hhHHhcCCCcEEE
Confidence 6665442 36 999999999988644 33 6778888775543
No 83
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=91.44 E-value=0.035 Score=43.58 Aligned_cols=35 Identities=11% Similarity=0.033 Sum_probs=29.9
Q ss_pred CCCCCcccccCcccccccccCCCCeEEEeecCChH
Q 046808 54 EPAETPSVTQNGKVEQAQMTSETEKVVLPTNESNE 88 (653)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~ 88 (653)
+..++++.+||+++|+++++..|+.|++++..+.+
T Consensus 33 ~~~~vaa~vNg~lvdl~~~L~~~~~Veivt~~~~~ 67 (73)
T 2kmm_A 33 GDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSLE 67 (73)
T ss_dssp HHTEEEEEETTEECCTTCBCCSSSBEEEEECCCCC
T ss_pred ccceEEEEECCEEeCCCcCcCCCCEEEEEECCCCc
Confidence 34456778999999999999999999999987654
No 84
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=90.53 E-value=0.93 Score=52.27 Aligned_cols=129 Identities=12% Similarity=-0.047 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecc-cCCceEEeccCChHHHHHHHHhhhcccCCCCc
Q 046808 291 IIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMN-IEDELYQLRPMNCPYHILVYQRKLQSYRDFPI 369 (653)
Q Consensus 291 ~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d-~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP~ 369 (653)
...+.+++.+...||+|+.|-.|.+.+.+..-+.. ++..++.. ...+.=+||++--|++....+.+. +.+..++
T Consensus 493 ~~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~----~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~-~r~~~~v 567 (795)
T 3pco_B 493 LSLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPG----VEALLLPSPISVEMSAMRLSLWTGLLATVVYNQ-NRQQNRV 567 (795)
T ss_dssp CCHHHHHHHHHHTTCEECCCCSEECHHHHHHHSSS----CCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHH-TSSCCCC
T ss_pred HHHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCC----CCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHH-hCCCCCc
Confidence 35667788888999999999999887766543311 12222221 234445799999998877776664 3345689
Q ss_pred EEEEeeeeeecCCCCCCCCcceeceeEEcceeeeeCc--------hhHHHHHHHHHHHHHHHHHHcCC
Q 046808 370 RVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE--------DQIKDEIRAVLDLTEEILLQFGF 429 (653)
Q Consensus 370 rl~~~g~~fR~E~~~~~~GL~R~REF~q~d~~ifg~~--------~~~~d~~~e~l~~~~~il~~lGl 429 (653)
|+|++|+||+.+... .. ..+|..+..+-+-|.. ....|. ..+-.....++..||+
T Consensus 568 ~lFEiG~Vf~~~~~~--~~--~~~e~~~la~~~~G~~~~~~w~~~~~~~dF-~dlKg~ve~ll~~lg~ 630 (795)
T 3pco_B 568 RIFESGLRFVPDTQA--PL--GIRQDLMLAGVICGNRYEEHWNLAKETVDF-YDLKGDLESVLDLTGK 630 (795)
T ss_dssp EEEEEEEEEEECTTS--ST--TEEEEEEEEEEEESBSSCSCSSSCCCBCCH-HHHHHHHHHHTTTSSC
T ss_pred cEEEeeeEEecCCCc--cc--CcchhheEEEEEECCCcccccccCCCCCCH-HHHHHHHHHHHHHcCC
Confidence 999999999875543 11 3456666666555532 122343 4677788888899987
No 85
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=86.54 E-value=0.13 Score=41.12 Aligned_cols=39 Identities=13% Similarity=-0.040 Sum_probs=30.7
Q ss_pred ccccCCCCCcccccCcccccccccCCCCeEEEeecCChH
Q 046808 50 SVATEPAETPSVTQNGKVEQAQMTSETEKVVLPTNESNE 88 (653)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~ 88 (653)
++..+-.+.+|.+||+++++++++..|+.|++++...-+
T Consensus 34 h~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit~~~~~ 72 (78)
T 3hvz_A 34 HSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLTTKELE 72 (78)
T ss_dssp CHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEECC---
T ss_pred hhhhhcceEEEEECCEEcCCCcccCCCCEEEEEccCccc
Confidence 344455667889999999999999999999999976544
No 86
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=65.40 E-value=29 Score=33.39 Aligned_cols=67 Identities=18% Similarity=0.343 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCceEEEEecCh------------hhHHHHHHHHHHHHhCCCeEEEeCCCCHHHHHHHHH
Q 046808 534 LERFFGVLIEHYAGDFPLWLSPIQARVLPVTD------------TQLEYCNEVIKKLKTNGIRAEICHGERLPKLIRNAE 601 (653)
Q Consensus 534 ieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~------------~~~~~a~~la~~Lr~~Gi~v~~d~~~~~~kk~~~A~ 601 (653)
.+-++...++. .|.+|.++|-.. ...+.-..+.++|+++||+|.+..+-. ..+++.|.
T Consensus 76 t~emi~ia~~~---------kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFIDpd-~~qi~aA~ 145 (243)
T 1m5w_A 76 TEEMLAIAVET---------KPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDAD-EEQIKAAA 145 (243)
T ss_dssp SHHHHHHHHHH---------CCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSC-HHHHHHHH
T ss_pred CHHHHHHHHHc---------CCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHH
Confidence 55666666554 688999998751 356677889999999999999887433 37999999
Q ss_pred HcCCCEEEE
Q 046808 602 KQKIPLMAV 610 (653)
Q Consensus 602 ~~gip~~ii 610 (653)
+.|++++=+
T Consensus 146 ~~GA~~IEL 154 (243)
T 1m5w_A 146 EVGAPFIEI 154 (243)
T ss_dssp HTTCSEEEE
T ss_pred HhCcCEEEE
Confidence 999998633
No 87
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=63.71 E-value=26 Score=34.37 Aligned_cols=65 Identities=18% Similarity=0.327 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCceEEEEecCh------------hhHHHHHHHHHHHHhCCCeEEEeCCCCHHHHHHHHH
Q 046808 534 LERFFGVLIEHYAGDFPLWLSPIQARVLPVTD------------TQLEYCNEVIKKLKTNGIRAEICHGERLPKLIRNAE 601 (653)
Q Consensus 534 ieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~------------~~~~~a~~la~~Lr~~Gi~v~~d~~~~~~kk~~~A~ 601 (653)
.+-++...++. .|.+|.++|-.. ...+.-..+.++|+++||+|.+..+-. .++++.|.
T Consensus 104 t~emi~ial~~---------kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFIDpd-~~qI~aA~ 173 (278)
T 3gk0_A 104 TPEMLDIACEI---------RPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDPD-EAQIRAAH 173 (278)
T ss_dssp SHHHHHHHHHH---------CCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECSC-HHHHHHHH
T ss_pred CHHHHHHHHHc---------CCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHH
Confidence 55667666654 688999998762 346667788899999999999887433 35899999
Q ss_pred HcCCCEE
Q 046808 602 KQKIPLM 608 (653)
Q Consensus 602 ~~gip~~ 608 (653)
+.|++++
T Consensus 174 ~~GAd~I 180 (278)
T 3gk0_A 174 ETGAPVI 180 (278)
T ss_dssp HHTCSEE
T ss_pred HhCcCEE
Confidence 9999986
No 88
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=61.49 E-value=19 Score=35.01 Aligned_cols=65 Identities=12% Similarity=0.222 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCceEEEEecChh----------hHHHHHHHHHHHHhCCCeEEEeCCCCHHHHHHHHHHc
Q 046808 534 LERFFGVLIEHYAGDFPLWLSPIQARVLPVTDT----------QLEYCNEVIKKLKTNGIRAEICHGERLPKLIRNAEKQ 603 (653)
Q Consensus 534 ieRli~~L~e~~~~~~P~~lap~~v~Vi~~~~~----------~~~~a~~la~~Lr~~Gi~v~~d~~~~~~kk~~~A~~~ 603 (653)
.+-++...++. .|.+|.++|-..+ ..+.-..+.++|+++||+|.+..+-. ..+++.|.+.
T Consensus 75 t~emi~ial~~---------kP~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFIDpd-~~qi~aA~~~ 144 (260)
T 3o6c_A 75 NDEILNLALKL---------KPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFINPS-LEDIEKSKIL 144 (260)
T ss_dssp CHHHHHHHHHH---------CCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEECSC-HHHHHHHHHT
T ss_pred CHHHHHHHHHc---------CCCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHh
Confidence 55667766654 6889999987632 34445678889999999999887433 3589999999
Q ss_pred CCCEE
Q 046808 604 KIPLM 608 (653)
Q Consensus 604 gip~~ 608 (653)
|++++
T Consensus 145 GAd~I 149 (260)
T 3o6c_A 145 KAQFI 149 (260)
T ss_dssp TCSEE
T ss_pred CCCEE
Confidence 99986
No 89
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=61.22 E-value=20 Score=32.12 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC----CEEEeccccc-CeeEEEecCCCCCHHHHHHHHHHHHHHHh
Q 046808 88 EQLLRIRHTCAHVMAMAVQKLYPD----AKVTIGPWIE-NGFYYDFDMEPLTDKDLKRIKKEMDRIIG 150 (653)
Q Consensus 88 ~~~~~~~hS~~hlL~~A~~~l~~~----~~~~~~~~~~-~g~~~d~~~~~lt~~~l~~Ie~~m~~iI~ 150 (653)
--...-.||+.||++.-+|+-... ..+-+++.-- .|||.-+.+..=+++-++.+++-|+.+.+
T Consensus 47 ~m~~~~iHTlEHL~A~~lRnh~~~~~~~~iId~sPMGCrTGFYl~l~G~~~~~~v~~~~~~~l~~il~ 114 (157)
T 1j98_A 47 AMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGETTSAEIVDLLEDTMKEAVE 114 (157)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTCSSEEEEEEEECTTSSEEEEEEEECCCHHHHHHHHHHHHHHHTT
T ss_pred hCCcccchHHHHHHHHHHhcCccccCCCCEEEeCCcCcccccEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 456677899999999999996532 2334444333 79998765433344555668888888874
No 90
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=60.91 E-value=27 Score=31.52 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=51.0
Q ss_pred CCCeEEEeec-----CChHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccccc-CeeEEEecCCCCCHHHHHHHHHHHHHH
Q 046808 75 ETEKVVLPTN-----ESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIE-NGFYYDFDMEPLTDKDLKRIKKEMDRI 148 (653)
Q Consensus 75 ~~~~V~~~~~-----~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~-~g~~~d~~~~~lt~~~l~~Ie~~m~~i 148 (653)
.|+.|.-.+. +..--...-.||+.||++.-+|+-. +..+-+++.-- .|||.-+.+..=+++-++.+++-|+.+
T Consensus 32 ~gd~It~fDlR~~qPN~e~m~~~~iHTlEHL~A~~lRnh~-~~iId~sPMGCrTGFYlil~G~~~~~~v~~~~~~~l~~I 110 (166)
T 1vje_A 32 KGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAGYMRDHL-EGVVDVSPMGARTGMYMAVIGEPDEQGVMKAFEAALKDT 110 (166)
T ss_dssp TSCEEEEEEEECSCTTSCCCCHHHHHHHHHHHHHHHHHHC-TTEEEEEECTTSSEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeeecCCChhhCCCcchhHHHHHHHHHHhcCC-CCeEEECCcccccccEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 4555544442 2334566778999999999999965 44566666544 799987665333455566688888888
Q ss_pred Hhc
Q 046808 149 IGR 151 (653)
Q Consensus 149 I~~ 151 (653)
.++
T Consensus 111 l~~ 113 (166)
T 1vje_A 111 AGH 113 (166)
T ss_dssp HTC
T ss_pred Hhc
Confidence 864
No 91
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=60.44 E-value=25 Score=31.47 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=49.8
Q ss_pred CCCeEEEeec-----CChHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccccc-CeeEEEecCCCCCHHHHHHHHHHHHHH
Q 046808 75 ETEKVVLPTN-----ESNEQLLRIRHTCAHVMAMAVQKLYPDAKVTIGPWIE-NGFYYDFDMEPLTDKDLKRIKKEMDRI 148 (653)
Q Consensus 75 ~~~~V~~~~~-----~~~~~~~~~~hS~~hlL~~A~~~l~~~~~~~~~~~~~-~g~~~d~~~~~lt~~~l~~Ie~~m~~i 148 (653)
.|+.|.-.+. +..--...-.||+.||++.-+++-. +..+-+++.-- .|||.-+.+..=+++-++.+++-|+.+
T Consensus 30 ~gd~It~fDlR~~qPN~e~m~~~~iHTlEHL~A~~lRnh~-~~iId~sPMGCrTGFYlil~G~~~~~~v~~~~~~~l~~I 108 (160)
T 1j6x_A 30 NGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLVAEIIRNHA-NYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDV 108 (160)
T ss_dssp TSCEEEEEEEECSCTTTCCCCHHHHHHHHHHHHHHHHHHC-SCEEEEEECTTSSEEEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeeecCCChhhCCCcchhHHHHHHHHHHhhCC-CCeEEECCcCcchhcEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 4445544442 2334566778999999999999965 44556666444 799987765333445566678888888
Q ss_pred Hh
Q 046808 149 IG 150 (653)
Q Consensus 149 I~ 150 (653)
.+
T Consensus 109 l~ 110 (160)
T 1j6x_A 109 LK 110 (160)
T ss_dssp TT
T ss_pred Hh
Confidence 74
No 92
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=55.10 E-value=32 Score=31.32 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=48.8
Q ss_pred CCCeEEEeec-----CChHHHHHHHHHHHHHHHHHHHHHcC--CC-EEEeccccc-CeeEEEecCCCCCHHHHHHHHHHH
Q 046808 75 ETEKVVLPTN-----ESNEQLLRIRHTCAHVMAMAVQKLYP--DA-KVTIGPWIE-NGFYYDFDMEPLTDKDLKRIKKEM 145 (653)
Q Consensus 75 ~~~~V~~~~~-----~~~~~~~~~~hS~~hlL~~A~~~l~~--~~-~~~~~~~~~-~g~~~d~~~~~lt~~~l~~Ie~~m 145 (653)
.|+.|.-.+. +..--...-.||+.||++.-+|+-.. +. .+-+++.-- .|||.-+.+..=+++-++.+++-|
T Consensus 29 ~gd~It~fDlR~~qPN~e~m~~~~iHTlEHL~A~~lRnh~~~~~~~iId~sPMGCrTGFYlil~G~~~~~~v~~~~~~~l 108 (175)
T 1j6w_A 29 KGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASM 108 (175)
T ss_dssp TCCEEEEEEEECSCTTTCCCCHHHHHHHHHHHHHHHHHHHCBTTBEEEEEEECTTSSEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEeeecCCChhhCCCccchHHHHHHHHHHhhCccCCCCeEEEeCCcCcccccEEEEeCCCCHHHHHHHHHHHH
Confidence 4555544442 23345667789999999999999653 22 334444333 799987765333455566688888
Q ss_pred HHHHh
Q 046808 146 DRIIG 150 (653)
Q Consensus 146 ~~iI~ 150 (653)
+.+.+
T Consensus 109 ~~Il~ 113 (175)
T 1j6w_A 109 QDVLG 113 (175)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88874
No 93
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=41.42 E-value=1.2e+02 Score=24.37 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHhCCCeEEEeC
Q 046808 566 TQLEYCNEVIKKLKTNGIRAEICH 589 (653)
Q Consensus 566 ~~~~~a~~la~~Lr~~Gi~v~~d~ 589 (653)
...+...++++..+..|++|+.|.
T Consensus 88 ~~K~~i~ei~kkykd~GykvE~d~ 111 (111)
T 2jmk_A 88 NMKKVIKATAEKFKNKGFKVETDM 111 (111)
T ss_dssp THHHHHHHHHHHGGGGCCEEEECC
T ss_pred hHHHHHHHHHHHhhcCCceeeccC
Confidence 456678899999999999999873
No 94
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=36.47 E-value=1.6e+02 Score=23.25 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=40.8
Q ss_pred eEEEeecCChHHHHHHHHHHHHHHHHHHHHHcCCC--EEEecccccCeeEEEecCCCCCHHHHHHHHHHHHHH
Q 046808 78 KVVLPTNESNEQLLRIRHTCAHVMAMAVQKLYPDA--KVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRI 148 (653)
Q Consensus 78 ~V~~~~~~~~~~~~~~~hS~~hlL~~A~~~l~~~~--~~~~~~~~~~g~~~d~~~~~lt~~~l~~Ie~~m~~i 148 (653)
.||++.+...---.-..--+..=|..=+.+.||++ .+.+.+..++|+-+ .+ .+++|-+.|++.++++
T Consensus 2 rVEi~~dK~~~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~Vr~~s~n~lsV--~g--~~k~dKe~i~eiLqE~ 70 (81)
T 1ghh_A 2 RIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSV--IG--ATKEDKQRISEILQET 70 (81)
T ss_dssp EEEEEEETTSCCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEEEESSCEEEE--ES--CCHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCceEEEeecCCCceee--cC--CChhHHHHHHHHHHHH
Confidence 35666655321111222334455666688899997 89999988998854 22 3455666666666655
No 95
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=36.08 E-value=1.6e+02 Score=26.76 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=40.9
Q ss_pred eEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC---CCCHHHHHHHHHH---cCCCEEEE
Q 046808 557 QARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH---GERLPKLIRNAEK---QKIPLMAV 610 (653)
Q Consensus 557 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~---~~~~~kk~~~A~~---~gip~~ii 610 (653)
.|.|+--++-....+.+.+..|+..|+..++.. .+...+-.++++. .|+..+|.
T Consensus 14 ~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa 73 (173)
T 4grd_A 14 LVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIA 73 (173)
T ss_dssp SEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEE
T ss_pred eEEEEeCcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEE
Confidence 588887788788889999999999999887776 4666666665544 78886543
No 96
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=34.83 E-value=1.6e+02 Score=26.73 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=41.8
Q ss_pred eEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC---CCCHHHHHHH---HHHcCCCEEEEEC
Q 046808 557 QARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH---GERLPKLIRN---AEKQKIPLMAVVG 612 (653)
Q Consensus 557 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~---~~~~~kk~~~---A~~~gip~~iiiG 612 (653)
.|.|+--+....+.+.+.+..|+..|+..++-. .+...+..++ |+..|++.+|.+.
T Consensus 9 ~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 70 (174)
T 3lp6_A 9 RVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGA 70 (174)
T ss_dssp SEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred eEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 588887787788889999999999999887776 3555555555 5668898655443
No 97
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=33.72 E-value=1.7e+02 Score=26.52 Aligned_cols=56 Identities=9% Similarity=0.034 Sum_probs=43.1
Q ss_pred eEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC---CCCHHHHHHHHH---HcCCCEEEEEC
Q 046808 557 QARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH---GERLPKLIRNAE---KQKIPLMAVVG 612 (653)
Q Consensus 557 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~---~~~~~kk~~~A~---~~gip~~iiiG 612 (653)
.|.|+--+.-..+.+.+.+..|+..|+..++-. .+...+..++++ ..|++.+|.+.
T Consensus 14 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 75 (174)
T 3kuu_A 14 KIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGN 75 (174)
T ss_dssp CEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred cEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 588887778788889999999999999988876 467777777665 47888655443
No 98
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=33.06 E-value=1e+02 Score=30.12 Aligned_cols=60 Identities=22% Similarity=0.159 Sum_probs=40.8
Q ss_pred cccCCCCcEEEEeeeeeecCCCC--CCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 362 QSYRDFPIRVAELGTVYRYELSG--SLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 362 ~s~~~lP~rl~~~g~~fR~E~~~--~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
++..+-|.+.+|+.++.|--..- ..-- |+..++|.-+-+=-+|+.. .+++.+.|+.|||.
T Consensus 65 RalGpePw~~AYVqPsRRP~DGRYGeNPN--RLq~yyQfQVilKPsP~ni-------QeLYL~SL~alGId 126 (311)
T 3rf1_A 65 RSLGKKPWAAAYVAPSRRPTDGRYGENPN--RLGAYYQFQVLIKPSPDNI-------QELYLKSLENLGFD 126 (311)
T ss_dssp TTSSSSCEEEEEEEEEECGGGCCTTCCSS--CCSEEEEEEEEEESCCTTH-------HHHHHHHHHHTTCC
T ss_pred HhcCCCcceeeeeccCCCCCCCCcCCCch--hhhhheeeEEEEcCCCccH-------HHHHHHHHHHhCCC
Confidence 45557799999999999853221 0112 7888888766554444433 35888999999994
No 99
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=32.26 E-value=28 Score=30.96 Aligned_cols=60 Identities=12% Similarity=0.171 Sum_probs=41.7
Q ss_pred CCceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC-----CCCHHHHHHHHHHcCCCEEEEECc
Q 046808 554 SPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-----GERLPKLIRNAEKQKIPLMAVVGA 613 (653)
Q Consensus 554 ap~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~-----~~~~~kk~~~A~~~gip~~iiiG~ 613 (653)
..++|+|-.-+++....+..|+..|+..|++|.+|. +..+...|..|-..---+++|+.+
T Consensus 19 ~~~dvFISy~~~D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~ 83 (154)
T 3h16_A 19 PPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLST 83 (154)
T ss_dssp CSEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEH
T ss_pred CCceEEEECcccChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCc
Confidence 357898887666543568899999999999999986 356777776664432223445554
No 100
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=32.23 E-value=61 Score=26.85 Aligned_cols=42 Identities=24% Similarity=0.402 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCCEEEecccccCeeEEEecC--CCCCHHHHHHHHHHHHHHHhcC
Q 046808 100 VMAMAVQKLYPDAKVTIGPWIENGFYYDFDM--EPLTDKDLKRIKKEMDRIIGRN 152 (653)
Q Consensus 100 lL~~A~~~l~~~~~~~~~~~~~~g~~~d~~~--~~lt~~~l~~Ie~~m~~iI~~~ 152 (653)
-|.+|+.+.||+....+ -|+||.. ..+|+.+ ++-.++|+.++
T Consensus 34 WLqAal~RKyp~~~f~~-------~YIDI~~~~~~l~d~~----~~~ae~I~ede 77 (111)
T 1xg8_A 34 WLQPLLKRKYPNISFKY-------TYIDITKDNDNLTDHD----LQFIERIEQDE 77 (111)
T ss_dssp HHHHHHHHHCTTSCEEE-------EEEETTTC---CCHHH----HHHHHHHHTTS
T ss_pred HHHHHHhCcCCCCceEE-------EEEeccCCccchhHHH----HHHHHHHhhcc
Confidence 37889999999876553 3788864 3455433 33344555554
No 101
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=31.27 E-value=1.1e+02 Score=29.78 Aligned_cols=61 Identities=23% Similarity=0.164 Sum_probs=40.2
Q ss_pred hcccCCCCcEEEEeeeeeecCCCC--CCCCcceeceeEEcceeeeeCchhHHHHHHHHHHHHHHHHHHcCCC
Q 046808 361 LQSYRDFPIRVAELGTVYRYELSG--SLHGLFRVRGFTQDDAHIFCLEDQIKDEIRAVLDLTEEILLQFGFN 430 (653)
Q Consensus 361 ~~s~~~lP~rl~~~g~~fR~E~~~--~~~GL~R~REF~q~d~~ifg~~~~~~d~~~e~l~~~~~il~~lGl~ 430 (653)
+++..+-|.+.+|+.++.|--..- ..-- |+..++|.-+-+=-+|+... +++.+.|+.|||.
T Consensus 52 LRaLGpepw~~AYVqPsRRP~DGRYGeNPN--RLq~y~QfQVilKPsP~niQ-------eLYL~SL~alGid 114 (298)
T 1j5w_A 52 FGSLRKGPWKVAYVQPSRRPTDGRYGENPN--RLQRYFQYQVIIKPSPENSQ-------ELYLESLEYLGIN 114 (298)
T ss_dssp TGGGCSSCEEEEEEEEEECCC-----CCTT--CCSEEEEEEEEEESCCSSHH-------HHHHHHHHHTTCC
T ss_pred HHhcCCCcceeeeeccCCCCCCCCcCCCch--hhhhheeeEEEECCCCccHH-------HHHHHHHHHhCCC
Confidence 345567799999999999853211 0111 78888887655544444433 4788899999994
No 102
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=30.59 E-value=2e+02 Score=26.00 Aligned_cols=55 Identities=13% Similarity=0.024 Sum_probs=42.8
Q ss_pred eEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC---CCCHHHHHHHHH---HcCCCEEEEE
Q 046808 557 QARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH---GERLPKLIRNAE---KQKIPLMAVV 611 (653)
Q Consensus 557 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~---~~~~~kk~~~A~---~~gip~~iii 611 (653)
.|.|+--+.-..+.+.+.+..|+..|+..++-. .+.+.+..++++ ..|++.+|.+
T Consensus 13 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~ 73 (170)
T 1xmp_A 13 LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAG 73 (170)
T ss_dssp SEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred cEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 477887788888899999999999999988876 477777777665 4678865544
No 103
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=30.43 E-value=1.7e+02 Score=26.53 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=41.3
Q ss_pred eEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC---CCCHHHHHHH---HHHcCCCEEEEEC
Q 046808 557 QARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH---GERLPKLIRN---AEKQKIPLMAVVG 612 (653)
Q Consensus 557 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~---~~~~~kk~~~---A~~~gip~~iiiG 612 (653)
.|.|+--+.-..+.+.+.+..|+..|+..++-. .+...+..++ |+..|++.+|.+.
T Consensus 8 ~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 69 (169)
T 3trh_A 8 FVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAA 69 (169)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 577887777778889999999999999888776 3666665555 4457888655443
No 104
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=27.86 E-value=2.4e+02 Score=25.84 Aligned_cols=55 Identities=11% Similarity=0.036 Sum_probs=43.1
Q ss_pred eEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC---CCCHHHHHHHHH---HcCCCEEEEE
Q 046808 557 QARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH---GERLPKLIRNAE---KQKIPLMAVV 611 (653)
Q Consensus 557 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~---~~~~~kk~~~A~---~~gip~~iii 611 (653)
.|.|+--+.-..+.+.+.+..|+..|+..++-. .+...+..++++ ..|+..+|.+
T Consensus 23 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~ 83 (182)
T 1u11_A 23 VVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAG 83 (182)
T ss_dssp SEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEE
T ss_pred EEEEEECcHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEe
Confidence 588888888888899999999999999988876 477777777765 4678865544
No 105
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=27.80 E-value=2.5e+02 Score=25.16 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=40.6
Q ss_pred eEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC---CCCHHHHHHHHH---HcCCCEEEEE
Q 046808 557 QARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH---GERLPKLIRNAE---KQKIPLMAVV 611 (653)
Q Consensus 557 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~---~~~~~kk~~~A~---~~gip~~iii 611 (653)
.|.|+--+.-..+.+.+.+..|...|+..++-. .+.+.+..++++ ..|++.+|.+
T Consensus 5 ~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~ 65 (163)
T 3ors_A 5 KVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAG 65 (163)
T ss_dssp CEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 477887777778889999999999999887776 466666666654 4678855544
No 106
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=27.35 E-value=3e+02 Score=24.77 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=42.3
Q ss_pred eEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC---CCCHHHHHHHHHH---cCCCEEEEEC
Q 046808 557 QARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH---GERLPKLIRNAEK---QKIPLMAVVG 612 (653)
Q Consensus 557 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~---~~~~~kk~~~A~~---~gip~~iiiG 612 (653)
.|.|+--+.-..+.+.+.+..|+..|+..++-. .++..+-+++++. .|+..+|.+.
T Consensus 7 ~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 68 (166)
T 3oow_A 7 QVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGA 68 (166)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred eEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 577887777788889999999999999888776 4667777777654 5777655443
No 107
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=27.19 E-value=68 Score=28.86 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=43.3
Q ss_pred CCCceEEEEecChhh------HHHHHHHHHHHHhCCCeEEE-----eCCCCHHHHHHHHHHcCCCEEEEECcccc
Q 046808 553 LSPIQARVLPVTDTQ------LEYCNEVIKKLKTNGIRAEI-----CHGERLPKLIRNAEKQKIPLMAVVGAKEV 616 (653)
Q Consensus 553 lap~~v~Vi~~~~~~------~~~a~~la~~Lr~~Gi~v~~-----d~~~~~~kk~~~A~~~gip~~iiiG~~e~ 616 (653)
..+..|.|+..+++. .....-++..|++.|+.+.. |+ ..+.+.++.|-..++.++|+-|.-..
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~ 78 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGI 78 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 345568888887654 22356788999999986643 33 55777888876668999999886543
No 108
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=26.38 E-value=2.8e+02 Score=25.38 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=42.2
Q ss_pred eEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC---CCCHHHHHHHHH---HcCCCEEEEE
Q 046808 557 QARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH---GERLPKLIRNAE---KQKIPLMAVV 611 (653)
Q Consensus 557 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~---~~~~~kk~~~A~---~~gip~~iii 611 (653)
.|.|+--+....+.+.+.+..|+..|+..++-. .+.+.+..++++ ..|+..+|.+
T Consensus 15 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~ 75 (183)
T 1o4v_A 15 RVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAG 75 (183)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEE
T ss_pred eEEEEeccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEe
Confidence 578887788888899999999999999988876 366776666655 4678855544
No 109
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=25.23 E-value=1.5e+02 Score=33.54 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhcCCeEEecCccCchhhhhhcCcccccccccceecccCCceEEeccCChHHHHHHHHhhhcccCCCC
Q 046808 289 RHIIEDFWKKSHIEHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMNIEDELYQLRPMNCPYHILVYQRKLQSYRDFP 368 (653)
Q Consensus 289 ~~~I~~~~~~~~~~~G~~~I~tP~le~~~l~~~sg~~~~~~~~~y~~~d~~~~~l~LrP~~~~~~~~~~~~~~~s~~~lP 368 (653)
.+.|.+.+.+.|++.|...+....+.+. ++ +.-||.- .+ -..+.|-.. .. ...+-+
T Consensus 62 ~~eir~~f~~ff~~~gh~~~~s~~lvp~--------~d--ptllft~--ag--m~~fkp~~~-------~g---~~~p~~ 117 (739)
T 2ztg_A 62 LDEMREYYLNFFERRGHGRIERYPVVAR--------WR--TDIYLTI--AS--IADFQPFVT-------SG---VAPPPA 117 (739)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCCSBCT--------TC--SSBSBCC--SG--GGGGTTTTT-------TS---SSCCSS
T ss_pred HHHHHHHHHHHHHHCCCEEeCCcCcCCC--------CC--CCceeee--cC--hhhCcHhHh-------CC---CCCCCC
Confidence 4567777777888899999877766553 11 1122211 00 000111100 01 111234
Q ss_pred cEEEEeeeeeec---CCCCCCCCcceecee-EEcceeeeeCchh--HHHHHHHHHHHHHHHHHHcCCCe
Q 046808 369 IRVAELGTVYRY---ELSGSLHGLFRVRGF-TQDDAHIFCLEDQ--IKDEIRAVLDLTEEILLQFGFNK 431 (653)
Q Consensus 369 ~rl~~~g~~fR~---E~~~~~~GL~R~REF-~q~d~~ifg~~~~--~~d~~~e~l~~~~~il~~lGl~~ 431 (653)
-++....+|-|- |..+ +-+ |-+.| .|.+-+.||.++. ... .|.+.+++++|+.|||+.
T Consensus 118 ~~~~~~Q~ciR~~D~envg-~t~--rH~tfFeMlgn~sFg~~~~~dYfK--~eai~~~~e~l~~~g~~~ 181 (739)
T 2ztg_A 118 NPLTISQPCIRLDDLDSVG-RTG--RHLTLFEMMAHHAFNYPGKEIYWK--NETVAYCTELLNELGVKK 181 (739)
T ss_dssp SSEEEEEEEECGGGGGGTT-TSS--SCCSEEEEEEEEEEEBTTBCSCCH--HHHHHHHHHHHHHHTCCG
T ss_pred CCcccccccccCcccccCC-CCC--cchhhhhccCccccCCCccccchH--HHHHHHHHHHHHHhCCCH
Confidence 688999999995 3334 345 77776 6888889996653 223 478999999997799964
No 110
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=23.43 E-value=92 Score=28.48 Aligned_cols=60 Identities=13% Similarity=0.013 Sum_probs=33.0
Q ss_pred CceEEEEecChhh-HHHHHHHHHHHHhCCCeEEEeC-CCCHHHHHHHHHHcCCC----EEEEECcc
Q 046808 555 PIQARVLPVTDTQ-LEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIP----LMAVVGAK 614 (653)
Q Consensus 555 p~~v~Vi~~~~~~-~~~a~~la~~Lr~~Gi~v~~d~-~~~~~kk~~~A~~~gip----~~iiiG~~ 614 (653)
.+||+|-.-+++. ...+..|+..|+..||++-+|+ .-..|..+...-..+|. .++|+.++
T Consensus 8 ~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~n 73 (176)
T 3jrn_A 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSEN 73 (176)
T ss_dssp CEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTT
T ss_pred CCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCC
Confidence 5788877655444 3578899999999999999997 55555555444333333 34555554
No 111
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=21.97 E-value=43 Score=27.20 Aligned_cols=27 Identities=7% Similarity=-0.022 Sum_probs=23.4
Q ss_pred CCcccccCcccccccccCCCCeEEEee
Q 046808 57 ETPSVTQNGKVEQAQMTSETEKVVLPT 83 (653)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~V~~~~ 83 (653)
...-.+|++.++.++++..|++|.++.
T Consensus 67 ~v~v~VNg~~v~~~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 67 DVNIAVNGRYVSWDEELKDGDVVGVFP 93 (98)
T ss_dssp SBEEEETTBCCCTTCBCCTTCEEEEES
T ss_pred cEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 345778999999999999999999874
No 112
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=21.58 E-value=3.9e+02 Score=23.81 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=40.6
Q ss_pred eEEEEecChhhHHHHHHHHHHHHhCCCeEEEeC---CCCHHHHHHHHHH---c-CCCEEEEEC
Q 046808 557 QARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH---GERLPKLIRNAEK---Q-KIPLMAVVG 612 (653)
Q Consensus 557 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~---~~~~~kk~~~A~~---~-gip~~iiiG 612 (653)
.|.|+--+....+.+.+.+..|...|+..++-. .+...+-.++++. . |+..+|.+.
T Consensus 4 ~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~A 66 (159)
T 3rg8_A 4 LVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIA 66 (159)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEEC
T ss_pred eEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEEC
Confidence 577887777788889999999999999888776 4667776666543 3 465555443
No 113
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=21.26 E-value=54 Score=24.82 Aligned_cols=29 Identities=3% Similarity=-0.094 Sum_probs=24.4
Q ss_pred CCCcccccCcccccccccCCCCeEEEeec
Q 046808 56 AETPSVTQNGKVEQAQMTSETEKVVLPTN 84 (653)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 84 (653)
...+-.+|+++++.+.++..|++|+++..
T Consensus 38 ~~v~vavN~~~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 38 ETVVVKKNGQIVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp TTEEEEETTEECCTTSBCCTTCEEEEEEC
T ss_pred CCEEEEECCEECCCcccCCCCCEEEEEec
Confidence 34457789999999999999999999864
No 114
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=20.99 E-value=1.5e+02 Score=26.01 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=26.9
Q ss_pred CEEEEECcccccCCeEEEEECCCCceeeeeHHHHHHHHHHHHhh
Q 046808 606 PLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATEN 649 (653)
Q Consensus 606 p~~iiiG~~e~~~~~V~vk~~~~~~q~~v~~~el~~~i~~~~~~ 649 (653)
|..++|++ +|+|..+.........-+.+++++.++++..+
T Consensus 122 p~tflID~----~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~e 161 (164)
T 4gqc_A 122 RAVFIVKP----DGTVAYKWVTDNPLNEPDYDEVVREANKIAGE 161 (164)
T ss_dssp CEEEEECT----TSBEEEEEECSCTTCCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECC----CCEEEEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 55678873 57887766554333445688999988887653
No 115
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=20.79 E-value=1.6e+02 Score=26.99 Aligned_cols=67 Identities=19% Similarity=0.125 Sum_probs=47.7
Q ss_pred CCCCceEEEEecChhhH-----HHHHHHHHHHHhCCCeEEEe----C-CCCHHHHHHHHHHcCCCEEEEECcccccC
Q 046808 552 WLSPIQARVLPVTDTQL-----EYCNEVIKKLKTNGIRAEIC----H-GERLPKLIRNAEKQKIPLMAVVGAKEVDA 618 (653)
Q Consensus 552 ~lap~~v~Vi~~~~~~~-----~~a~~la~~Lr~~Gi~v~~d----~-~~~~~kk~~~A~~~gip~~iiiG~~e~~~ 618 (653)
+..+..|.|+..+++.. ....-++..|++.|+.+..- | ...+.+.++.|-..++.++|+-|.-..-.
T Consensus 27 ~~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~ 103 (185)
T 3rfq_A 27 ELVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTP 103 (185)
T ss_dssp --CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred CCCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 33566789998887653 35678899999999876543 2 35588888888657899999998655433
No 116
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=20.55 E-value=2.5e+02 Score=25.38 Aligned_cols=49 Identities=6% Similarity=0.079 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHhCCCeEEEeC---C--C----CHHHHHHHHHHcCCCEEEEECcc
Q 046808 566 TQLEYCNEVIKKLKTNGIRAEICH---G--E----RLPKLIRNAEKQKIPLMAVVGAK 614 (653)
Q Consensus 566 ~~~~~a~~la~~Lr~~Gi~v~~d~---~--~----~~~kk~~~A~~~gip~~iiiG~~ 614 (653)
-.++.|.++.+.|++.|+.|.+-. + . .+.++.+.|+..++-+.|-|=-+
T Consensus 30 i~l~ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~N 87 (180)
T 3qay_A 30 YNKSLAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHLN 87 (180)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeeeC
Confidence 356778999999999999963322 1 1 38899999999999998866433
No 117
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=20.47 E-value=2.6e+02 Score=23.11 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=46.1
Q ss_pred ceEEEEecChhhHHHHHHHHHHHHhCCCeEEEeCCCC--HHHHHHHHHHcCCCEEEEECcccccCCeEEEEECCCCceee
Q 046808 556 IQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICHGER--LPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGT 633 (653)
Q Consensus 556 ~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~d~~~~--~~kk~~~A~~~gip~~iiiG~~e~~~~~V~vk~~~~~~q~~ 633 (653)
..++-+..++. .+...+..+...-.++.+..|.... +.+++. -.++|..+++++ +|.|.-+. .|.
T Consensus 65 ~~~v~v~~d~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---i~~~P~~~lid~----~G~i~~~~--~g~--- 131 (148)
T 3hcz_A 65 IQVYAANIERK-DEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD---IYATPVLYVLDK----NKVIIAKR--IGY--- 131 (148)
T ss_dssp EEEEEEECCSS-SHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC---CCSSCEEEEECT----TCBEEEES--CCG---
T ss_pred EEEEEEEecCC-HHHHHHHHHHcCCCCceEEeccccchhHHHhcC---cCCCCEEEEECC----CCcEEEec--CCH---
Confidence 34444444422 2233444444433347777776433 665544 578999999974 45655443 332
Q ss_pred eeHHHHHHHHHHHHhh
Q 046808 634 MKVDDFISRIKSATEN 649 (653)
Q Consensus 634 v~~~el~~~i~~~~~~ 649 (653)
-.++++++.+.+.+..
T Consensus 132 ~~~~~~l~~l~~~l~~ 147 (148)
T 3hcz_A 132 ENLDDFLVQYEKSLKT 147 (148)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4577777777776654
No 118
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=20.29 E-value=42 Score=25.65 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=22.3
Q ss_pred cccccCcccccccccCCCCeEEEee
Q 046808 59 PSVTQNGKVEQAQMTSETEKVVLPT 83 (653)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~V~~~~ 83 (653)
+-.+|+++++.++++..|++|+++.
T Consensus 48 ~v~vNg~~v~~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 48 QVAVNEEFVQKSDFIQPNDTVALIP 72 (77)
T ss_dssp EEEETTEEECTTSEECTTCEEEEEC
T ss_pred EEEECCEECCCCCCcCCCCEEEEEC
Confidence 5678999999999999999999875
Done!