BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046813
         (250 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FFC|A Chain A, Crystal Structure Of Plasmodium Vivax
           Orotidine-Monophosphate- Decarboxyl Ump Bound
          Length = 353

 Score = 27.7 bits (60), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 143 LIPGGSKMRAKTDQEMDKTTSYVGAGYDPEQPECNVMMHTSNIN 186
           L+P GS ++ K  +  D+  + +  G DP++ +    M +   N
Sbjct: 14  LVPRGSNLKIKLQKRRDEVNTCLCIGLDPDEADIKSFMQSEKQN 57


>pdb|2GUU|A Chain A, Crystal Structure Of Plasmodium Vivax Orotidine
           5-Monophosphate Decarboxylase With 6-Aza-Ump Bound
          Length = 353

 Score = 27.7 bits (60), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 143 LIPGGSKMRAKTDQEMDKTTSYVGAGYDPEQPECNVMMHTSNIN 186
           L+P GS ++ K  +  D+  + +  G DP++ +    M +   N
Sbjct: 14  LVPRGSNLKIKLQKRRDEVNTCLCIGLDPDEADIKSFMQSEKQN 57


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,686,805
Number of Sequences: 62578
Number of extensions: 256789
Number of successful extensions: 538
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 2
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)