Query 046813
Match_columns 250
No_of_seqs 195 out of 837
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 07:44:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2da3_A Alpha-fetoprotein enhan 99.9 1.8E-23 6.3E-28 154.6 2.4 71 17-92 6-76 (80)
2 2dmt_A Homeobox protein BARH-l 99.9 8.9E-23 3E-27 152.2 4.3 69 18-91 7-75 (80)
3 1wh7_A ZF-HD homeobox family p 99.9 7.7E-23 2.6E-27 154.6 1.9 70 15-90 4-78 (80)
4 2cue_A Paired box protein PAX6 99.8 5.2E-22 1.8E-26 148.0 5.4 65 27-96 6-70 (80)
5 1nk2_P Homeobox protein VND; h 99.8 7.3E-22 2.5E-26 146.3 5.4 68 23-95 4-71 (77)
6 1wh5_A ZF-HD homeobox family p 99.8 2.5E-22 8.5E-27 151.2 2.2 62 24-90 13-78 (80)
7 2da4_A Hypothetical protein DK 99.8 3.8E-22 1.3E-26 148.5 2.9 65 22-91 2-70 (80)
8 2dmu_A Homeobox protein goosec 99.8 7.1E-22 2.4E-26 143.5 4.2 61 27-92 6-66 (70)
9 2dmq_A LIM/homeobox protein LH 99.8 1E-21 3.5E-26 145.7 5.0 63 26-93 5-67 (80)
10 1fjl_A Paired protein; DNA-bin 99.8 1.1E-21 3.8E-26 146.3 4.4 66 24-94 14-79 (81)
11 2dms_A Homeobox protein OTX2; 99.8 8.4E-22 2.9E-26 146.7 3.5 63 26-93 5-67 (80)
12 1puf_A HOX-1.7, homeobox prote 99.8 2.7E-21 9.1E-26 143.2 6.2 65 25-94 10-74 (77)
13 2cra_A Homeobox protein HOX-B1 99.8 5.3E-22 1.8E-26 144.4 2.3 62 26-92 5-66 (70)
14 2e1o_A Homeobox protein PRH; D 99.8 1.6E-21 5.6E-26 141.8 4.6 61 27-92 6-66 (70)
15 2da1_A Alpha-fetoprotein enhan 99.8 8.7E-22 3E-26 142.8 2.8 64 24-92 3-66 (70)
16 2da2_A Alpha-fetoprotein enhan 99.8 9.9E-22 3.4E-26 142.5 2.7 62 26-92 5-66 (70)
17 2kt0_A Nanog, homeobox protein 99.8 8.4E-22 2.9E-26 147.4 1.5 66 22-92 16-81 (84)
18 2djn_A Homeobox protein DLX-5; 99.8 9.8E-22 3.3E-26 143.0 1.7 61 26-91 5-65 (70)
19 1b8i_A Ultrabithorax, protein 99.8 1.3E-21 4.4E-26 146.6 2.4 61 28-93 20-80 (81)
20 2r5y_A Homeotic protein sex co 99.8 8.7E-22 3E-26 149.2 1.4 79 7-92 9-87 (88)
21 2vi6_A Homeobox protein nanog; 99.8 6.6E-22 2.3E-26 140.6 0.5 60 28-92 3-62 (62)
22 1ig7_A Homeotic protein MSX-1; 99.8 2.8E-21 9.5E-26 135.3 3.5 57 29-90 1-57 (58)
23 1zq3_P PRD-4, homeotic bicoid 99.8 3.6E-21 1.2E-25 139.5 4.2 62 28-94 2-63 (68)
24 2h1k_A IPF-1, pancreatic and d 99.8 2.3E-21 7.7E-26 138.5 3.1 60 28-92 3-62 (63)
25 3nar_A ZHX1, zinc fingers and 99.8 1.7E-21 5.8E-26 150.1 2.1 72 18-94 15-86 (96)
26 2hdd_A Protein (engrailed home 99.8 2.5E-21 8.5E-26 137.3 2.8 58 28-90 3-60 (61)
27 3a01_A Homeodomain-containing 99.8 4.3E-21 1.5E-25 147.5 3.4 67 24-95 13-79 (93)
28 1jgg_A Segmentation protein EV 99.8 5E-21 1.7E-25 135.3 3.0 58 29-91 2-59 (60)
29 1ahd_P Antennapedia protein mu 99.8 5.7E-21 2E-25 138.7 3.0 60 28-92 2-61 (68)
30 2cuf_A FLJ21616 protein; homeo 99.8 1.1E-20 3.9E-25 145.0 4.4 69 25-94 4-83 (95)
31 1yz8_P Pituitary homeobox 2; D 99.8 2.7E-21 9.2E-26 140.0 0.8 62 27-93 2-63 (68)
32 1b72_A Protein (homeobox prote 99.8 7.9E-21 2.7E-25 146.4 3.4 85 4-93 8-94 (97)
33 2k40_A Homeobox expressed in E 99.8 1.9E-21 6.4E-26 140.2 -0.3 61 29-94 2-62 (67)
34 3a02_A Homeobox protein arista 99.8 5.5E-21 1.9E-25 135.1 2.1 58 31-93 2-59 (60)
35 2l7z_A Homeobox protein HOX-A1 99.8 1.3E-20 4.5E-25 138.5 4.1 62 26-92 5-66 (73)
36 1bw5_A ISL-1HD, insulin gene e 99.8 4.2E-21 1.4E-25 138.0 1.2 61 27-92 2-62 (66)
37 1ftt_A TTF-1 HD, thyroid trans 99.8 8.4E-21 2.9E-25 137.6 2.6 61 28-93 2-62 (68)
38 1uhs_A HOP, homeodomain only p 99.8 1.9E-20 6.6E-25 136.8 4.1 59 29-92 2-61 (72)
39 2hi3_A Homeodomain-only protei 99.8 2E-20 6.8E-25 137.3 3.8 59 29-92 3-62 (73)
40 2dn0_A Zinc fingers and homeob 99.8 8.8E-21 3E-25 140.1 1.9 64 24-92 4-67 (76)
41 2da5_A Zinc fingers and homeob 99.8 2.1E-20 7E-25 138.3 3.8 58 30-92 9-66 (75)
42 3rkq_A Homeobox protein NKX-2. 99.8 1.7E-20 6E-25 130.3 2.9 57 28-89 2-58 (58)
43 2m0c_A Homeobox protein arista 99.8 1.1E-20 3.8E-25 137.8 1.6 61 27-92 8-68 (75)
44 3a03_A T-cell leukemia homeobo 99.8 2.8E-20 9.5E-25 130.3 3.1 54 33-91 2-55 (56)
45 1akh_A Protein (mating-type pr 99.8 1.6E-20 5.6E-25 132.6 1.8 59 26-89 3-61 (61)
46 1x2n_A Homeobox protein pknox1 99.8 8.1E-20 2.8E-24 133.6 4.7 62 26-92 5-69 (73)
47 2da6_A Hepatocyte nuclear fact 99.8 1.5E-19 5.2E-24 143.5 5.5 71 24-95 2-89 (102)
48 2ly9_A Zinc fingers and homeob 99.8 4.2E-20 1.4E-24 135.2 1.8 61 27-92 5-65 (74)
49 1e3o_C Octamer-binding transcr 99.8 7.3E-20 2.5E-24 152.7 1.7 63 24-91 97-159 (160)
50 2ecc_A Homeobox and leucine zi 99.8 2E-19 6.9E-24 136.0 4.0 58 30-92 5-62 (76)
51 1puf_B PRE-B-cell leukemia tra 99.8 2.2E-19 7.6E-24 131.3 3.9 62 28-94 1-65 (73)
52 1b72_B Protein (PBX1); homeodo 99.8 1.6E-19 5.5E-24 135.7 2.8 64 28-96 1-67 (87)
53 2dmp_A Zinc fingers and homeob 99.8 3.4E-19 1.2E-23 136.1 4.4 58 30-92 15-72 (89)
54 1k61_A Mating-type protein alp 99.8 2.4E-19 8.1E-24 126.4 2.7 55 31-90 1-58 (60)
55 2dmn_A Homeobox protein TGIF2L 99.7 6.1E-19 2.1E-23 133.0 4.6 62 27-92 6-69 (83)
56 1du6_A PBX1, homeobox protein 99.7 1.4E-19 4.7E-24 129.1 0.3 58 28-90 3-63 (64)
57 3d1n_I POU domain, class 6, tr 99.7 5E-19 1.7E-23 145.9 3.2 62 24-90 89-150 (151)
58 1au7_A Protein PIT-1, GHF-1; c 99.7 2.5E-19 8.5E-24 147.8 0.6 63 24-91 83-145 (146)
59 1mnm_C Protein (MAT alpha-2 tr 99.7 9.5E-19 3.2E-23 132.2 3.2 57 28-89 27-86 (87)
60 1wi3_A DNA-binding protein SAT 99.7 9.4E-19 3.2E-23 131.2 3.0 59 24-87 3-62 (71)
61 2ecb_A Zinc fingers and homeob 99.7 1.3E-18 4.6E-23 134.4 3.6 55 34-93 17-71 (89)
62 2cqx_A LAG1 longevity assuranc 99.7 2.6E-19 8.8E-24 132.4 -0.4 56 30-90 10-66 (72)
63 1lfb_A Liver transcription fac 99.7 4.1E-19 1.4E-23 139.3 -0.6 69 25-95 6-92 (99)
64 1le8_B Mating-type protein alp 99.7 1.5E-18 5.3E-23 130.4 2.4 63 29-96 3-68 (83)
65 2e19_A Transcription factor 8; 99.7 8.9E-19 3E-23 127.0 1.1 55 31-90 6-60 (64)
66 2xsd_C POU domain, class 3, tr 99.7 1.1E-18 3.9E-23 146.7 1.6 65 24-93 95-159 (164)
67 1x2m_A LAG1 longevity assuranc 99.7 2.1E-18 7.3E-23 126.5 1.6 48 38-90 10-58 (64)
68 3nau_A Zinc fingers and homeob 99.7 3.9E-18 1.3E-22 126.3 2.7 52 36-92 12-63 (66)
69 2l9r_A Homeobox protein NKX-3. 99.7 1.2E-18 4.1E-23 128.7 -0.2 56 33-93 9-64 (69)
70 3l1p_A POU domain, class 5, tr 99.7 4.7E-18 1.6E-22 141.2 2.0 61 26-91 94-154 (155)
71 2d5v_A Hepatocyte nuclear fact 99.7 3.3E-18 1.1E-22 142.1 0.9 63 25-92 94-156 (164)
72 3k2a_A Homeobox protein MEIS2; 99.6 4.6E-17 1.6E-21 118.4 1.1 57 34-95 4-63 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 1.6E-16 5.6E-21 137.7 -1.6 65 25-90 112-193 (194)
74 2h8r_A Hepatocyte nuclear fact 99.5 8.2E-15 2.8E-19 129.9 2.1 67 21-88 135-218 (221)
75 2da7_A Zinc finger homeobox pr 99.4 1.5E-14 5E-19 108.6 1.9 48 36-88 13-60 (71)
76 2lk2_A Homeobox protein TGIF1; 99.4 5.1E-14 1.8E-18 109.4 3.0 58 33-95 10-70 (89)
77 1mh3_A Maltose binding-A1 home 99.4 1.3E-14 4.4E-19 130.0 -0.9 57 28-89 365-421 (421)
78 2nzz_A Penetratin conjugated G 98.9 6.8E-11 2.3E-15 78.7 -0.7 23 75-97 1-23 (37)
79 2ys9_A Homeobox and leucine zi 85.7 0.18 6.2E-06 37.6 0.4 41 37-82 15-55 (70)
80 1hlv_A CENP-B, major centromer 74.9 1.8 6.2E-05 32.8 2.7 51 30-88 3-53 (131)
81 3hug_A RNA polymerase sigma fa 71.2 3.3 0.00011 29.9 3.2 46 34-89 37-82 (92)
82 2glo_A Brinker CG9653-PA; prot 69.9 1.6 5.5E-05 29.4 1.2 45 32-82 3-47 (59)
83 2elh_A CG11849-PA, LD40883P; s 67.8 4.2 0.00014 29.4 3.2 42 30-81 18-59 (87)
84 1jko_C HIN recombinase, DNA-in 64.1 2.1 7.2E-05 26.6 0.8 43 35-87 6-48 (52)
85 2o8x_A Probable RNA polymerase 64.0 2.9 9.9E-05 27.9 1.6 40 34-83 15-54 (70)
86 1tc3_C Protein (TC3 transposas 63.7 4.5 0.00015 24.4 2.3 40 34-83 5-44 (51)
87 2jn6_A Protein CGL2762, transp 62.2 5.1 0.00018 29.0 2.8 42 32-83 3-46 (97)
88 1s7o_A Hypothetical UPF0122 pr 61.5 8.5 0.00029 29.6 4.0 49 34-92 22-70 (113)
89 3mzy_A RNA polymerase sigma-H 58.6 6.6 0.00022 29.5 2.9 39 34-83 109-147 (164)
90 1xsv_A Hypothetical UPF0122 pr 57.9 9.8 0.00034 29.1 3.8 49 34-92 25-73 (113)
91 2rgt_A Fusion of LIM/homeobox 54.7 0.15 5.1E-06 41.4 -7.4 29 26-55 134-162 (169)
92 1cn3_F Fragment of coat protei 51.4 8.2 0.00028 23.8 1.9 10 17-26 2-11 (29)
93 2eqr_A N-COR1, N-COR, nuclear 49.7 9.1 0.00031 26.5 2.2 52 26-85 6-58 (61)
94 2dk5_A DNA-directed RNA polyme 48.2 9.3 0.00032 28.6 2.2 43 28-77 11-53 (91)
95 3c57_A Two component transcrip 47.3 7.7 0.00026 28.4 1.6 38 34-82 27-64 (95)
96 1je8_A Nitrate/nitrite respons 46.2 4.9 0.00017 28.7 0.3 45 33-88 20-64 (82)
97 1fi6_A EH domain protein REPS1 46.0 7.5 0.00026 27.7 1.3 45 33-81 1-49 (92)
98 1p4w_A RCSB; solution structur 44.6 15 0.00051 27.6 2.9 45 32-87 32-76 (99)
99 1fse_A GERE; helix-turn-helix 44.0 7.7 0.00026 26.0 1.1 47 32-89 9-55 (74)
100 1or7_A Sigma-24, RNA polymeras 42.7 13 0.00043 29.1 2.3 43 35-87 141-183 (194)
101 2x48_A CAG38821; archeal virus 41.8 7 0.00024 25.2 0.6 39 34-82 13-53 (55)
102 1rp3_A RNA polymerase sigma fa 41.3 14 0.00048 29.5 2.4 46 34-89 187-232 (239)
103 3i5g_B Myosin regulatory light 40.9 54 0.0018 25.2 5.7 41 30-74 5-49 (153)
104 1ku3_A Sigma factor SIGA; heli 40.4 15 0.00052 25.1 2.2 39 34-82 10-52 (73)
105 3him_A Probable transcriptiona 38.2 8.8 0.0003 29.3 0.7 47 37-89 19-65 (211)
106 1x3u_A Transcriptional regulat 36.9 6 0.00021 27.1 -0.4 44 35-89 17-60 (79)
107 2qko_A Possible transcriptiona 36.7 8.5 0.00029 30.1 0.4 43 39-87 33-75 (215)
108 1u78_A TC3 transposase, transp 36.3 22 0.00075 26.4 2.6 41 33-83 5-45 (141)
109 3dcf_A Transcriptional regulat 35.7 5.2 0.00018 30.8 -1.0 46 38-89 35-80 (218)
110 2lv7_A Calcium-binding protein 32.1 39 0.0013 24.7 3.4 50 29-81 24-78 (100)
111 2rnj_A Response regulator prot 31.4 7.1 0.00024 28.1 -0.8 45 33-88 28-72 (91)
112 2rn7_A IS629 ORFA; helix, all 31.0 24 0.00081 25.8 2.0 46 32-81 4-51 (108)
113 2q1z_A RPOE, ECF SIGE; ECF sig 30.3 7.2 0.00024 30.3 -1.0 45 35-89 136-180 (184)
114 1iuf_A Centromere ABP1 protein 30.3 47 0.0016 26.0 3.8 50 29-83 6-59 (144)
115 1c07_A Protein (epidermal grow 29.6 13 0.00044 26.7 0.3 45 33-81 2-50 (95)
116 2k27_A Paired box protein PAX- 29.1 68 0.0023 24.7 4.5 40 34-83 25-64 (159)
117 2p7v_B Sigma-70, RNA polymeras 29.0 16 0.00053 24.7 0.6 38 34-81 5-46 (68)
118 3g1o_A Transcriptional regulat 28.9 8.5 0.00029 31.3 -0.9 44 40-89 49-92 (255)
119 3ulq_B Transcriptional regulat 28.7 23 0.0008 25.9 1.6 45 26-81 21-65 (90)
120 1etf_B REV peptide; complex (R 27.3 25 0.00087 21.5 1.3 13 83-95 8-20 (26)
121 1tty_A Sigma-A, RNA polymerase 27.1 20 0.0007 25.5 1.0 40 34-83 18-61 (87)
122 2jpc_A SSRB; DNA binding prote 26.5 15 0.00051 23.9 0.2 40 38-88 2-41 (61)
123 1l0o_C Sigma factor; bergerat 26.4 14 0.00047 29.5 0.0 42 35-86 199-240 (243)
124 2hxo_A Putative TETR-family tr 25.9 39 0.0013 27.8 2.7 54 29-88 10-64 (237)
125 1pdn_C Protein (PRD paired); p 25.7 32 0.0011 24.7 1.9 39 34-82 17-55 (128)
126 2q0o_A Probable transcriptiona 24.3 29 0.001 28.7 1.6 46 32-88 173-218 (236)
127 2iai_A Putative transcriptiona 24.2 21 0.0007 28.4 0.6 46 38-89 34-79 (230)
128 3fia_A Intersectin-1; EH 1 dom 23.6 23 0.0008 28.0 0.8 47 30-80 22-72 (121)
129 3q0w_A HTH-type transcriptiona 23.2 9.1 0.00031 30.7 -1.7 45 40-90 50-94 (236)
130 2np3_A Putative TETR-family re 23.2 19 0.00065 28.0 0.2 45 39-89 35-79 (212)
131 2x7l_M HIV REV; nuclear export 22.7 30 0.001 27.8 1.3 37 40-95 15-51 (115)
132 2q24_A Putative TETR family tr 22.0 14 0.00049 28.3 -0.7 45 38-89 19-63 (194)
133 3c07_A Putative TETR-family tr 21.4 12 0.0004 31.5 -1.4 46 38-89 45-90 (273)
134 3rd3_A Probable transcriptiona 20.7 18 0.00061 27.3 -0.4 47 37-89 13-59 (197)
135 3on2_A Probable transcriptiona 20.5 34 0.0012 25.6 1.2 46 38-89 16-61 (199)
No 1
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=1.8e-23 Score=154.60 Aligned_cols=71 Identities=30% Similarity=0.529 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 17 GGGGGGGGTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 17 gg~~g~g~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
.++.++......+|+|+.||.+|+.+||..|..+ .||+.++|.+||.+| | |+++||+|||||||+|+|+++
T Consensus 6 ~~~~~~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~-~yp~~~~r~~La~~l---~-l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 6 SGGTGGEEPQRDKRLRTTITPEQLEILYQKYLLD-SNPTRKMLDHIAHEV---G-LKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCCCCCCCCTTCCSSCCTTTHHHHHHHHHHC-SSCCHHHHHHHHHHH---T-SCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH---C-cCHHHhHHHhHHHHHhHhhhc
Confidence 3444555677789999999999999999999999 499999999999999 6 999999999999999999854
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=8.9e-23 Score=152.19 Aligned_cols=69 Identities=23% Similarity=0.300 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHH
Q 046813 18 GGGGGGGTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQK 91 (250)
Q Consensus 18 g~~g~g~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krk 91 (250)
++..+...+..+|+|+.||.+|+.+||..|..++ ||+..+|.+||..| | |+++||+|||||||||+|+.
T Consensus 7 ~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l---~-L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 7 GGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQK-YLSTPDRIDLAESL---G-LSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCSCCCCCCCCCSCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---C-CCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHh---C-CCHHHeeeccHHHHHHhhcc
Confidence 3334445667889999999999999999999995 99999999999999 6 99999999999999999975
No 3
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.85 E-value=7.7e-23 Score=154.57 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=61.6
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 15 SGGGGGGGGGTTLSSSSRWNPTKEQINMLESLYAQ-----GIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 15 s~gg~~g~g~~~~~rR~Rt~fT~eQL~~LE~~F~~-----~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
+++|+++++.....+|.|+.||.+|+.+|| .|.. + +||+..+|++||.+| | |+++||+|||||||||+|
T Consensus 4 ~~~g~~~~~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~-~yp~~~~r~~La~~l---g-L~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 4 GSSGSNPSSSGGTTKRFRTKFTAEQKEKML-AFAERLGWRI-QKHDDVAVEQFCAET---G-VRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp CCCCCCCCCCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCC-CSSTTHHHHHHHHHS---C-CCHHHHHHHHHTTSCCSC
T ss_pred CCCCCCCCCCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCC-CCCCHHHHHHHHHHh---C-cCcCcccccccccccCCC
Confidence 334555666677789999999999999999 7999 8 499999999999999 6 999999999999999987
Q ss_pred H
Q 046813 90 Q 90 (250)
Q Consensus 90 r 90 (250)
+
T Consensus 78 ~ 78 (80)
T 1wh7_A 78 S 78 (80)
T ss_dssp C
T ss_pred C
Confidence 4
No 4
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=5.2e-22 Score=148.02 Aligned_cols=65 Identities=22% Similarity=0.391 Sum_probs=60.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHHHHH
Q 046813 27 LSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQER 96 (250)
Q Consensus 27 ~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~~~~ 96 (250)
..+|.|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |++++|+|||||||+|+|++++...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTH-YPDVFARERLAAKI---D-LPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHT---T-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh---C-CCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 4678999999999999999999995 99999999999999 6 9999999999999999999887654
No 5
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.85 E-value=7.3e-22 Score=146.28 Aligned_cols=68 Identities=25% Similarity=0.316 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHHHH
Q 046813 23 GGTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQE 95 (250)
Q Consensus 23 g~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~~~ 95 (250)
|.....+|.|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+|+.+.+.
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQQR-YLSAPEREHLASLI---R-LTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHT---T-CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHh---C-CCHHHHHHHhHHhhcchhhhhccc
Confidence 34556788999999999999999999995 99999999999999 6 999999999999999999977653
No 6
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.84 E-value=2.5e-22 Score=151.23 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHH
Q 046813 24 GTTLSSSSRWNPTKEQINMLESLYAQ----GIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQ 90 (250)
Q Consensus 24 ~~~~~rR~Rt~fT~eQL~~LE~~F~~----~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Kr 90 (250)
+....+|.|+.||.+|+.+||..|+. + +||+..+|++||.+| | |+++||+|||||||||+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~-~yp~~~~r~~La~~l---g-L~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRI-QRQDDEVIQRFCQET---G-VPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCC-CTTTHHHHHHHHHHS---C-CCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcC-CCcCHHHHHHHHHHh---C-CCcccccCCccccCcCCCC
Confidence 44567899999999999999999999 8 499999999999999 6 9999999999999999874
No 7
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-22 Score=148.54 Aligned_cols=65 Identities=18% Similarity=0.338 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHH
Q 046813 22 GGGTTLSSSSRWNPTKEQINMLESLYAQG----IRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQK 91 (250)
Q Consensus 22 ~g~~~~~rR~Rt~fT~eQL~~LE~~F~~~----~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krk 91 (250)
+++....+|.|+.||.+|+.+||..|..+ + ||+.++|.+||.+| | |+++||+|||||||+|+|+.
T Consensus 2 s~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~-yp~~~~r~~La~~l---g-L~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 2 SSGSSGALQDRTQFSDRDLATLKKYWDNGMTSLG-SVCREKIEAVATEL---N-VDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCS-HHHHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCC-CcCHHHHHHHHHHh---C-CCHHHhhHhHHHHHHHHhhc
Confidence 44556788999999999999999999999 7 99999999999999 6 99999999999999999984
No 8
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=7.1e-22 Score=143.50 Aligned_cols=61 Identities=25% Similarity=0.409 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 27 LSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 27 ~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
..+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETK-YPDVGTREQLARKV---H-LREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH---C-CCHHHeehccccccccccccC
Confidence 3678999999999999999999995 99999999999999 6 999999999999999999854
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1e-21 Score=145.74 Aligned_cols=63 Identities=22% Similarity=0.424 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHH
Q 046813 26 TLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQK 93 (250)
Q Consensus 26 ~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~ 93 (250)
...+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |++++|+|||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINH-NPDAKDLKQLAQKT---G-LTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT---C-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh---C-CCHHHhhHccHHHHHHHHHHHH
Confidence 34788999999999999999999995 99999999999999 6 9999999999999999999764
No 10
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.84 E-value=1.1e-21 Score=146.33 Aligned_cols=66 Identities=21% Similarity=0.344 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHHH
Q 046813 24 GTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQ 94 (250)
Q Consensus 24 ~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~~ 94 (250)
..+..+|.|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+|++...
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQ-YPDIYTREELAQRT---N-LTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH---C-cCHHHHHHHHHHHhhhhhhhccc
Confidence 4566789999999999999999999994 99999999999999 6 99999999999999999997753
No 11
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=8.4e-22 Score=146.67 Aligned_cols=63 Identities=25% Similarity=0.462 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHH
Q 046813 26 TLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQK 93 (250)
Q Consensus 26 ~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~ 93 (250)
...+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |++++|+|||||||||+|++++
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTR-YPDIFMREEVALKI---N-LPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT---T-CCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH---C-cCHHHhhhhhHHHhHHhhHHHH
Confidence 45788999999999999999999995 99999999999999 5 9999999999999999998653
No 12
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.83 E-value=2.7e-21 Score=143.24 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHHH
Q 046813 25 TTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQ 94 (250)
Q Consensus 25 ~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~~ 94 (250)
.+..+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+|+..++
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNM-YLTRDRRYEVARLL---N-LTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHH---C-cCHHHHHHHHHHHHHHHHHhhhh
Confidence 345778999999999999999999995 99999999999999 6 99999999999999999998765
No 13
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=5.3e-22 Score=144.39 Aligned_cols=62 Identities=19% Similarity=0.375 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 26 TLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 26 ~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
...+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANK-FITKDKRRKISAAT---S-LSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT---C-CCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH---C-CCHHHhhHhhHhHHHHhcccC
Confidence 44778999999999999999999995 99999999999999 6 999999999999999999753
No 14
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=1.6e-21 Score=141.82 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=56.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 27 LSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 27 ~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
..+++|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQK-YLSPPERKRLAKML---Q-LSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT---T-CCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHH---C-CCHHHhhHhhHhhHhhcCCCC
Confidence 3667899999999999999999995 99999999999999 6 999999999999999999864
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=8.7e-22 Score=142.79 Aligned_cols=64 Identities=25% Similarity=0.440 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 24 GTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 24 ~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
.....+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+|++.
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINN-SPSEEQIKEMADKS---G-LPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHH---C-CCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHh---C-CCHHHHHHHhhhhhHHHhhhc
Confidence 3445789999999999999999999995 99999999999999 6 999999999999999999754
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=9.9e-22 Score=142.49 Aligned_cols=62 Identities=23% Similarity=0.459 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 26 TLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 26 ~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
...+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANA-YPKDDEFEQLSNLL---N-LPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHS---C-CCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHh---C-CCHHHhHHhhHhhhHHHhhcc
Confidence 34678999999999999999999995 99999999999999 6 999999999999999999753
No 17
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=8.4e-22 Score=147.37 Aligned_cols=66 Identities=21% Similarity=0.291 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 22 GGGTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 22 ~g~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
+......+|.|+.||.+|+.+||..|..++ ||+..+|.+||..| | |+++||+|||||||||+|+++
T Consensus 16 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 16 DKVPVKKQKTRTVFSSTQLCVLNDRFQRQK-YLSLQQMQELSNIL---N-LSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCCCSCSCCCSSCCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHT---T-CCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHc---C-CCHHHHHHHHHHHHHHHHHHh
Confidence 344566789999999999999999999995 99999999999999 6 999999999999999999864
No 18
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.8e-22 Score=143.00 Aligned_cols=61 Identities=16% Similarity=0.296 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHH
Q 046813 26 TLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQK 91 (250)
Q Consensus 26 ~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krk 91 (250)
...+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQ-YLALPERAELAASL---G-LTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHS---S-CCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHh---C-CCHHHHHHHHHHHhhhhccc
Confidence 34678999999999999999999995 99999999999999 6 99999999999999999874
No 19
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.82 E-value=1.3e-21 Score=146.62 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=53.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHH
Q 046813 28 SSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQK 93 (250)
Q Consensus 28 ~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~ 93 (250)
.+|.|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |++++|+|||||||+|+|++++
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHTNH-YLTRRRRIEMAHAL---S-LTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCcccCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHh---C-CCHHHHHHHhHHhhhhhhhhcc
Confidence 678999999999999999999995 99999999999999 6 9999999999999999998653
No 20
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.82 E-value=8.7e-22 Score=149.15 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=58.2
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchh
Q 046813 7 NNNNMGMVSGGGGGGGGGTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKA 86 (250)
Q Consensus 7 ~~~~~~~~s~gg~~g~g~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRA 86 (250)
++||-.+..+.+ .++.....+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |++++|+||||||||
T Consensus 9 ~pwm~~~~~~~~--~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~vWFqNRR~ 81 (88)
T 2r5y_A 9 YPWMKRVHLGTS--TVNANGETKRQRTSYTRYQTLELEKEFHFNR-YLTRRRRIEIAHAL---S-LTERQIKIWFQNRRM 81 (88)
T ss_dssp CGGGSCC-----------------CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHT---T-CCHHHHHHHHHHHHH
T ss_pred CchhhccCCCCC--CCCCCCCCCCCCCCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh---C-cCHHHhhHHhHHHHH
Confidence 456655332211 2223445788999999999999999999994 99999999999999 6 999999999999999
Q ss_pred HHHHHH
Q 046813 87 RQRQKQ 92 (250)
Q Consensus 87 R~Krkq 92 (250)
|+|+++
T Consensus 82 k~kk~~ 87 (88)
T 2r5y_A 82 KWKKEH 87 (88)
T ss_dssp HHHTTC
T ss_pred HhHhhc
Confidence 999854
No 21
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.82 E-value=6.6e-22 Score=140.63 Aligned_cols=60 Identities=23% Similarity=0.327 Sum_probs=52.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 28 SSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 28 ~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
.+|+|+.||.+|+.+||..|..++ ||+..+|.+||..| | |++++|+|||||||||+|++|
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQK-YLSLQQMQELSSIL---N-LSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHh---C-CCHHHhhHHhHHhhcchhhcC
Confidence 678999999999999999999995 99999999999999 6 999999999999999999853
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.82 E-value=2.8e-21 Score=135.31 Aligned_cols=57 Identities=25% Similarity=0.347 Sum_probs=54.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHH
Q 046813 29 SSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQ 90 (250)
Q Consensus 29 rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Kr 90 (250)
+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQ-YLSIAERAEFSSSL---S-LTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHT---T-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHH---C-cCHHHhhhhhhHhhhhhcc
Confidence 57899999999999999999995 99999999999999 6 9999999999999999987
No 23
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.82 E-value=3.6e-21 Score=139.53 Aligned_cols=62 Identities=26% Similarity=0.437 Sum_probs=58.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHHH
Q 046813 28 SSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQ 94 (250)
Q Consensus 28 ~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~~ 94 (250)
++|+|+.||.+|+.+||..|..++ ||+..+|.+||..| | |++++|+|||||||+|+|++..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGR-YLTAPRLADLSAKL---A-LGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH---T-SCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh---C-cCHHHhhHhhHHHHHHHHHHhcc
Confidence 578999999999999999999995 99999999999999 6 99999999999999999997754
No 24
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.82 E-value=2.3e-21 Score=138.49 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 28 SSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 28 ~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
.+|+|+.||.+|+.+||..|..++ ||+..+|.+||..| | |+++||+|||||||+|+|+.+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNK-YISRPRRVELAVML---N-LTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh---C-cCHHHhhHHHHhhhhhhhhhc
Confidence 578999999999999999999995 99999999999999 6 999999999999999999863
No 25
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.82 E-value=1.7e-21 Score=150.13 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHHH
Q 046813 18 GGGGGGGTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQ 94 (250)
Q Consensus 18 g~~g~g~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~~ 94 (250)
+++++++....+|+|+.||.+|+.+||..|..+ .||+..+|.+||.+| | |+++||+|||||||+|+|+.+..
T Consensus 15 ~~~~p~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l---~-L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 15 LFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRT-QWPSPEEYDKLAKES---G-LARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ------------CCSSSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH---C-CCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh---C-CCHHHeeecchhhhhHhhhhccc
Confidence 333344555677899999999999999999999 499999999999999 6 99999999999999999987533
No 26
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.82 E-value=2.5e-21 Score=137.27 Aligned_cols=58 Identities=21% Similarity=0.412 Sum_probs=52.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHH
Q 046813 28 SSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQ 90 (250)
Q Consensus 28 ~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Kr 90 (250)
.+|+|+.||.+|+.+||..|..++ ||+..+|.+||..| | |+++||+|||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENR-YLTERRRQQLSSEL---G-LNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH---C-cCHHHHHHHhhhhcccccc
Confidence 578999999999999999999995 99999999999999 6 9999999999999999986
No 27
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.81 E-value=4.3e-21 Score=147.50 Aligned_cols=67 Identities=19% Similarity=0.286 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHHHH
Q 046813 24 GTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQE 95 (250)
Q Consensus 24 ~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~~~ 95 (250)
.....+|+|+.||.+|+.+||..|..++ ||+..+|.+||..| | |+++||+|||||||+|+|++..++
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l---~-L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQK-YLASAERAALARGL---K-MTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHTT---T-CCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHh---C-CChhhcccccHhhhhhhhhhhHHH
Confidence 4455788999999999999999999994 99999999999999 6 999999999999999999987554
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.81 E-value=5e-21 Score=135.27 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=54.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHH
Q 046813 29 SSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQK 91 (250)
Q Consensus 29 rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krk 91 (250)
+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |++++|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKEN-YVSRPRRCELAAQL---N-LPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH---T-SCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH---C-cCHHHHHHhhHHHHhHhhcc
Confidence 68899999999999999999995 99999999999999 6 99999999999999999974
No 29
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.81 E-value=5.7e-21 Score=138.68 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=56.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 28 SSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 28 ~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
.+|.|+.||.+|+.+||..|..++ ||+..+|.+||..| | |+++||+|||||||||+|++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNR-YLTRRRRIEIAHAL---S-LTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHH---T-CCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCC-CCCHHHHHHHHHHH---C-cCHhhhhHHhHHHHhHHhHhc
Confidence 578999999999999999999995 99999999999999 6 999999999999999999865
No 30
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1.1e-20 Score=145.01 Aligned_cols=69 Identities=17% Similarity=0.401 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhH-----------hcCCCCCCceeeecccchhHHHHHHH
Q 046813 25 TTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLR-----------AYGHIEGKNVFYWFQNHKARQRQKQK 93 (250)
Q Consensus 25 ~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~-----------~~G~L~erqVqvWFQNRRAR~Krkq~ 93 (250)
....+|.|+.||++|+.+||..|..+ .||+..+|++||.+|. .++.|++.+|+|||||||+|+|++++
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~-~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNEN-QYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 34578899999999999999999999 5999999999999991 11119999999999999999998775
Q ss_pred H
Q 046813 94 Q 94 (250)
Q Consensus 94 ~ 94 (250)
.
T Consensus 83 ~ 83 (95)
T 2cuf_A 83 I 83 (95)
T ss_dssp C
T ss_pred c
Confidence 3
No 31
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.81 E-value=2.7e-21 Score=139.97 Aligned_cols=62 Identities=21% Similarity=0.386 Sum_probs=58.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHH
Q 046813 27 LSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQK 93 (250)
Q Consensus 27 ~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~ 93 (250)
..+|+|+.||.+|+.+||..|..++ ||+..+|.+||..| | |++++|+|||||||+|+|++++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNR-YPDMSTREEIAVWT---N-LTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCS-SCCTTTTTHHHHHT---T-SCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH---C-cCHHHHHHHHHHHhHHHHHHhh
Confidence 3678999999999999999999995 99999999999999 6 9999999999999999998764
No 32
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=7.9e-21 Score=146.43 Aligned_cols=85 Identities=20% Similarity=0.186 Sum_probs=61.1
Q ss_pred CCCCCCCcccccCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeec
Q 046813 4 DGDNNNNMGMVSGG--GGGGGGGTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWF 81 (250)
Q Consensus 4 ~~~~~~~~~~~s~g--g~~g~g~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWF 81 (250)
....+||-..-+.. ......+....+|+|+.||.+|+.+||..|..++ ||+..+|.+||..| | |+++||+|||
T Consensus 8 ~~~~~W~~~~r~~~~~~~~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~vWF 82 (97)
T 1b72_A 8 ARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNK-YLSRARRVEIAATL---E-LNETQVKIWF 82 (97)
T ss_dssp CCCCGGGGC--------------------CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH---T-CCHHHHHHHH
T ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCcCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh---C-CCHHHhHHHH
Confidence 44567777532111 1112222346788999999999999999999994 99999999999999 6 9999999999
Q ss_pred ccchhHHHHHHH
Q 046813 82 QNHKARQRQKQK 93 (250)
Q Consensus 82 QNRRAR~Krkq~ 93 (250)
||||+|+|++++
T Consensus 83 qNRR~k~kk~~~ 94 (97)
T 1b72_A 83 QNRRMKQKKRER 94 (97)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHhHHHhHHhc
Confidence 999999998764
No 33
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-21 Score=140.21 Aligned_cols=61 Identities=23% Similarity=0.508 Sum_probs=57.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHHH
Q 046813 29 SSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQ 94 (250)
Q Consensus 29 rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~~ 94 (250)
+|+|+.||++|+.+||..|..++ ||+..+|.+||.+| | |++++|++||||||+|+|++.++
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNC-YPGIDILEDLAQKL---N-LELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH---C-cCHHHhhHhhHhHHHHHhHhchh
Confidence 68999999999999999999994 99999999999999 6 99999999999999999986544
No 34
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.80 E-value=5.5e-21 Score=135.07 Aligned_cols=58 Identities=24% Similarity=0.449 Sum_probs=49.7
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHH
Q 046813 31 SRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQK 93 (250)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~ 93 (250)
.|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||++||||||||+|++++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTH-YPDVFTREELAMKI---G-LTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---T-SCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHH---C-cCHHHHHHHhhhhhhhhHhhcc
Confidence 589999999999999999994 99999999999999 6 9999999999999999998753
No 35
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.80 E-value=1.3e-20 Score=138.46 Aligned_cols=62 Identities=23% Similarity=0.345 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 26 TLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 26 ~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
...+|+|+.||.+|+.+||..|..++ ||+..+|.+||..| | |+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNK-FITKDKRRRISATT---N-LSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTS-CCCHHHHHHHHHHH---T-SCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCC-CcCHHHHHHHHHHH---C-CCHHHHHHHHHHHhHHHHHHh
Confidence 34678999999999999999999995 99999999999999 6 999999999999999999753
No 36
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.80 E-value=4.2e-21 Score=138.00 Aligned_cols=61 Identities=21% Similarity=0.414 Sum_probs=56.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 27 LSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 27 ~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
..+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||++||||||+|+|++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANP-RPDALMKEQLVEMT---G-LSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH---T-SCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHH---C-cCHHHHHHHhHHHHHHHhHHh
Confidence 3678999999999999999999994 99999999999999 6 999999999999999998753
No 37
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.80 E-value=8.4e-21 Score=137.58 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=57.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHH
Q 046813 28 SSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQK 93 (250)
Q Consensus 28 ~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~ 93 (250)
.+|+|+.||.+|+.+||..|..++ ||+..+|.+||..| | |++++|+|||||||+|+|++.+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQK-YLSAPEREHLASMI---H-LTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHH---T-SCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHh---C-CCHHHhHHHhHHHhhhhhhhhh
Confidence 468999999999999999999995 99999999999999 6 9999999999999999998653
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=1.9e-20 Score=136.82 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 29 SSSRWNPTKEQINMLESLYAQ-GIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 29 rR~Rt~fT~eQL~~LE~~F~~-~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
.++|+.||.+|+.+||..|.. + +||+..+|.+||.+| | |+++||+|||||||||+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~l---~-l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEA---G-LTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSC-SSCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHH---C-cCHHHhhHHhHHHHHHHhhhc
Confidence 368999999999999999996 8 599999999999999 6 999999999999999999865
No 39
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=2e-20 Score=137.28 Aligned_cols=59 Identities=20% Similarity=0.454 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 29 SSSRWNPTKEQINMLESLYAQ-GIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 29 rR~Rt~fT~eQL~~LE~~F~~-~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
+++|+.||.+|+.+||..|.. + +||+..+|.+||.+| | |+++||+|||||||||+|+++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~~---~-l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEA---G-LTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTT-SSCCHHHHHHHHHHH---T-SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH---C-cCHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999995 8 599999999999999 6 999999999999999999866
No 40
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=8.8e-21 Score=140.13 Aligned_cols=64 Identities=19% Similarity=0.408 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 24 GTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 24 ~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
+...+.+.|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+|++.
T Consensus 4 ~~~~~~~~R~~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~---~-l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 4 GSSGASIYKNKKSHEQLSALKGSFCRNQ-FPGQSEVEHLTKVT---G-LSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp SCSCCCCCCCCCCHHHHHHHHHHHHHSS-SCCSHHHHHHHHHH---C-CCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh---C-CChHHhhHHhHHHhHHHHHhc
Confidence 3444667799999999999999999995 99999999999999 6 999999999999999999754
No 41
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-20 Score=138.27 Aligned_cols=58 Identities=19% Similarity=0.394 Sum_probs=54.0
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 30 SSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
++|..||.+||.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+|+++
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNP-LPLDEELDRLRSET---K-MTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---C-CCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCccCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh---C-CCHHHhhHhhHHHHHHHHHhh
Confidence 5677789999999999999995 99999999999999 6 999999999999999999865
No 42
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.79 E-value=1.7e-20 Score=130.25 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=53.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 28 SSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 28 ~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
.+|.|+.||.+|+.+||..|..++ ||+..+|.+||..| | |+++||+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQR-YLSAPERDQLASVL---K-LTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh---C-cCHHHHHHhhHHhhccCC
Confidence 468899999999999999999995 99999999999999 6 999999999999999985
No 43
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-20 Score=137.84 Aligned_cols=61 Identities=25% Similarity=0.387 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 27 LSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 27 ~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
..+|.|+.||.+|+.+||..|..++ ||+..+|.+||..| | |++++|+|||||||+|+|+++
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQKTH-YPDVYAREQLAMRT---D-LTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHh---C-CCHHHHHHHhHHHHHHHHHHH
Confidence 3678999999999999999999995 99999999999999 6 999999999999999999864
No 44
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.79 E-value=2.8e-20 Score=130.28 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHH
Q 046813 33 WNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQK 91 (250)
Q Consensus 33 t~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krk 91 (250)
+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l---~-l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQK-YLASAERAALAKAL---R-MTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcC-CcCHHHHHHHHHHh---C-cCHHHhhHhhHHhhhhhccc
Confidence 5799999999999999994 99999999999999 6 99999999999999999985
No 45
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.79 E-value=1.6e-20 Score=132.59 Aligned_cols=59 Identities=17% Similarity=0.375 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 26 TLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 26 ~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
...+|+|+.||.+|+.+||..|..+ .||+..+|.+||.+| | |++.||+|||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~-~yp~~~~r~~La~~~---~-l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRK-QSLNSKEKEEVAKKC---G-ITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH---T-SCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhC-CCcCHHHHHHHHHHH---C-cCHHHHHHHHHHHHhccC
Confidence 4577899999999999999999999 599999999999999 6 999999999999999986
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=8.1e-20 Score=133.59 Aligned_cols=62 Identities=23% Similarity=0.272 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 26 TLSSSSRWNPTKEQINMLESLYAQ---GIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 26 ~~~rR~Rt~fT~eQL~~LE~~F~~---~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
...+++|+.||.+|+.+||..|.. + +||+.++|.+||.+| | |+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~---~-L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGH-PYPTEDEKKQIAAQT---N-LTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHH---C-cCHHHHHHHhHHHHhhccccc
Confidence 446788999999999999999987 6 599999999999999 6 999999999999999999864
No 47
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-19 Score=143.50 Aligned_cols=71 Identities=20% Similarity=0.338 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHh-------------cC----CCCCCceeeecccchh
Q 046813 24 GTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRA-------------YG----HIEGKNVFYWFQNHKA 86 (250)
Q Consensus 24 ~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~-------------~G----~L~erqVqvWFQNRRA 86 (250)
..++.+|.|+.||++|+.+||..|..++ ||+.++|++||.+|.. || .|++.+|+|||||||+
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F~~~~-yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~ 80 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 80 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHH
Confidence 4456889999999999999999999995 9999999999999943 23 5999999999999999
Q ss_pred HHHHHHHHH
Q 046813 87 RQRQKQKQE 95 (250)
Q Consensus 87 R~Krkq~~~ 95 (250)
|+|++++..
T Consensus 81 k~kr~~~~~ 89 (102)
T 2da6_A 81 EEAFRQKLA 89 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhHhh
Confidence 999987654
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.77 E-value=4.2e-20 Score=135.22 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=57.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 27 LSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 27 ~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
..++.|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+|+++
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l---~-l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQ-FPHDSEIIRLMKIT---G-LTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---C-CCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh---C-cCHHHeeeCChhHhHHHHhhC
Confidence 3678999999999999999999994 99999999999999 6 999999999999999999854
No 49
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.76 E-value=7.3e-20 Score=152.65 Aligned_cols=63 Identities=21% Similarity=0.388 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHH
Q 046813 24 GTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQK 91 (250)
Q Consensus 24 ~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krk 91 (250)
+..+.+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+||+
T Consensus 97 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l---~-L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 97 GLSRRRKKRTSIETNIRVALEKSFMENQ-KPTSEDITLIAEQL---N-MEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCcCccccCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHH---C-CChHHhhHhhHHhhhhhhcc
Confidence 3457889999999999999999999994 99999999999999 6 99999999999999999974
No 50
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=2e-19 Score=135.96 Aligned_cols=58 Identities=26% Similarity=0.413 Sum_probs=53.8
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 30 SSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
++|..||++|+.+||..|..+ +||+.++|++||+.| | |+++||+|||||||+|+|+.+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~-~YPs~~er~~LA~~t---g-Lte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQC-QWARREDYQKLEQIT---G-LPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT---C-CCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH---C-cCHHHhhHHhHhhHHHHHHHH
Confidence 466779999999999999999 499999999999999 6 999999999999999999754
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.76 E-value=2.2e-19 Score=131.26 Aligned_cols=62 Identities=23% Similarity=0.421 Sum_probs=57.0
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHHH
Q 046813 28 SSSSRWNPTKEQINMLESLY---AQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQ 94 (250)
Q Consensus 28 ~rR~Rt~fT~eQL~~LE~~F---~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~~ 94 (250)
.+|+|+.||.+|+.+||..| ..+ +||+.++|.+||.+| | |+++||+|||||||+|+|++...
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~---~-L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC---G-ITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH---T-SCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccC-CCcCHHHHHHHHHHH---C-cCHHHHHHHHHHHHhhccccccc
Confidence 36899999999999999999 788 599999999999999 6 99999999999999999986544
No 52
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.76 E-value=1.6e-19 Score=135.75 Aligned_cols=64 Identities=22% Similarity=0.396 Sum_probs=57.1
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHHHHH
Q 046813 28 SSSSRWNPTKEQINMLESLY---AQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQER 96 (250)
Q Consensus 28 ~rR~Rt~fT~eQL~~LE~~F---~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~~~~ 96 (250)
.+|+|+.||.+|+.+||..| ..+ +||+.++|.+||.+| | |+++||++||||||+|+|++.....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~-~yp~~~~r~~La~~~---~-l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC---G-ITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTS-CCCCHHHHHHHHHHH---T-SCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHH---C-cCHHHHHHHHHHHHHHhhhcccccc
Confidence 36899999999999999999 778 599999999999999 6 9999999999999999998765543
No 53
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.4e-19 Score=136.10 Aligned_cols=58 Identities=12% Similarity=0.340 Sum_probs=52.6
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 30 SSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
+++-.||.+||.+||..|..+ .||+..+|.+||.+| | |++++|+|||||||||+|+++
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~---~-l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKS-SFPTQAELDRLRVET---K-LSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccC-CCCCHHHHHHHHHHh---C-CCHHhccHhhHhHHHHHHHHh
Confidence 344458999999999999999 499999999999999 6 999999999999999999755
No 54
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.75 E-value=2.4e-19 Score=126.44 Aligned_cols=55 Identities=16% Similarity=0.360 Sum_probs=51.8
Q ss_pred CCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHH
Q 046813 31 SRWNPTKEQINMLESLYAQ---GIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQ 90 (250)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~---~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Kr 90 (250)
+|+.||.+|+.+||..|.. + +||+.++|.+||.+| | |+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~---g-l~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT---S-LSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH---C-CCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCC-CCcCHHHHHHHHHHH---C-cCHHHHHHHHHHHHccccc
Confidence 4778999999999999999 7 599999999999999 6 9999999999999999986
No 55
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.75 E-value=6.1e-19 Score=132.99 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=56.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 27 LSSSSRWNPTKEQINMLESLYAQG--IRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 27 ~~rR~Rt~fT~eQL~~LE~~F~~~--~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
..+++|+.||.+|+.+||..|..+ .+||+.++|.+||.+| | |+++||+|||||||+|+|+..
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~---g-Ls~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT---N-LSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH---C-CCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH---C-cCHHHhhHHhhhhHhhhcHHH
Confidence 467889999999999999999874 2599999999999999 6 999999999999999998754
No 56
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=1.4e-19 Score=129.11 Aligned_cols=58 Identities=21% Similarity=0.402 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHH
Q 046813 28 SSSSRWNPTKEQINMLESLY---AQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQ 90 (250)
Q Consensus 28 ~rR~Rt~fT~eQL~~LE~~F---~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Kr 90 (250)
.+++|+.||.+|+.+||..| ..+ +||+.++|.+||.+| | |++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~---~-L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC---G-ITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH---T-SCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHHH---C-cCHHHHHHHHHHHHHHhcc
Confidence 46889999999999999999 788 599999999999999 6 9999999999999999885
No 57
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.74 E-value=5e-19 Score=145.93 Aligned_cols=62 Identities=18% Similarity=0.382 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHH
Q 046813 24 GTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQ 90 (250)
Q Consensus 24 ~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Kr 90 (250)
.....+|+|+.||.+|+.+||..|..+ +||+..+|.+||.+| | |+++||+|||||||+|+||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l---~-L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKN-PLPTGQEITEMAKEL---N-YDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH---T-SCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH---C-CCHHHhHHHHHHHHhccCC
Confidence 345677899999999999999999999 499999999999999 6 9999999999999999985
No 58
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.73 E-value=2.5e-19 Score=147.84 Aligned_cols=63 Identities=21% Similarity=0.374 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHH
Q 046813 24 GTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQK 91 (250)
Q Consensus 24 ~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krk 91 (250)
...+.+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+||+
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l---~-L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHS-KPSSQEIMRMAEEL---N-LEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh---C-CChhhchhhhHhhhhhhhcc
Confidence 3455778999999999999999999995 99999999999999 6 99999999999999999974
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.73 E-value=9.5e-19 Score=132.19 Aligned_cols=57 Identities=16% Similarity=0.339 Sum_probs=53.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 28 SSSSRWNPTKEQINMLESLYAQ---GIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 28 ~rR~Rt~fT~eQL~~LE~~F~~---~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
.+++|+.||.+|+.+||..|.. + +||+.++|.+||.+| | |+++||++||||||+|+|
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~---g-L~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT---S-LSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSS-CCCCHHHHHHHHHHH---C-CCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHH---C-cCHHHHHHHHHHHHhhcc
Confidence 5567999999999999999999 8 599999999999999 6 999999999999999997
No 60
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=9.4e-19 Score=131.20 Aligned_cols=59 Identities=22% Similarity=0.407 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhH
Q 046813 24 GTTLSSSSRWNPTKEQINMLESLYAQ-GIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKAR 87 (250)
Q Consensus 24 ~~~~~rR~Rt~fT~eQL~~LE~~F~~-~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR 87 (250)
+.+.++|.||.||.+||.+|+..|+. + .||+.+.|++||++| | |++++|+|||||||.-
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~-~yPd~~~r~~La~~t---G-L~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVG-LYPDQEAIHTLSAQL---D-LPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHS---C-CCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh---C-CCHHHHHHhhccceee
Confidence 34468899999999999999999999 9 599999999999999 7 9999999999999973
No 61
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=1.3e-18 Score=134.42 Aligned_cols=55 Identities=16% Similarity=0.396 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHH
Q 046813 34 NPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQK 93 (250)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~ 93 (250)
.||.+||.+||..|..++ ||+..+|.+||..| | |+++||+|||||||+|||++++
T Consensus 17 ~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l---g-Lte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSS-VLTDEELNRLRAQT---K-LTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT---C-CCHHHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHh---C-cChHHCeecccccchHHHHHHH
Confidence 788999999999999995 99999999999999 6 9999999999999999998653
No 62
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=2.6e-19 Score=132.35 Aligned_cols=56 Identities=13% Similarity=0.366 Sum_probs=50.9
Q ss_pred CCCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHH
Q 046813 30 SSRWNPTKEQINMLESLY-AQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQ 90 (250)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F-~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Kr 90 (250)
+.|..++.+|+.+||..| ..+ +||+..+|.+||.+| | |+++||+|||||||||+|+
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~~-~yp~~~~r~~LA~~l---~-l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSVT-KYPDEKRLKGLSKQL---D-WSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTC-SSCCHHHHHHHHHHT---T-CCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh---C-CChhhcchhhhhcccCCCC
Confidence 455566689999999999 888 599999999999999 6 9999999999999999985
No 63
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.71 E-value=4.1e-19 Score=139.31 Aligned_cols=69 Identities=19% Similarity=0.335 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH------------------hHhcCCCCCCceeeecccchh
Q 046813 25 TTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTR------------------LRAYGHIEGKNVFYWFQNHKA 86 (250)
Q Consensus 25 ~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~------------------L~~~G~L~erqVqvWFQNRRA 86 (250)
.+..+|.||.||++|+.+||..|..++ ||+..+|++||.. |-+. .|++.+|+|||||||+
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~-yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~-~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSN-LVTEVRVYNWFANRRK 83 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGG-CCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhccccccccccccccccccCcc-ccCcceeeeccHHHHH
Confidence 356789999999999999999999994 9999999999999 6111 1999999999999999
Q ss_pred HHHHHHHHH
Q 046813 87 RQRQKQKQE 95 (250)
Q Consensus 87 R~Krkq~~~ 95 (250)
|+|++++..
T Consensus 84 k~k~k~~~~ 92 (99)
T 1lfb_A 84 EEAFRHKLA 92 (99)
T ss_dssp TTSCCC---
T ss_pred HHHHhchhh
Confidence 998876543
No 64
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.71 E-value=1.5e-18 Score=130.40 Aligned_cols=63 Identities=14% Similarity=0.275 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHHHHH
Q 046813 29 SSSRWNPTKEQINMLESLYAQ---GIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQER 96 (250)
Q Consensus 29 rR~Rt~fT~eQL~~LE~~F~~---~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~~~~ 96 (250)
+++|+.||.+|+.+||..|.. + +||+..+|.+||.+| | |+++||+|||||||+|+|+.....+
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~-~yP~~~~r~~La~~~---g-Lt~~qV~~WFqNrR~r~kk~~~~~~ 68 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT---S-LSRIQIKNWVAARRAKEKTITIAPE 68 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSS-CCCCHHHHHHHHHHH---C-CCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHHH---C-CCHHHcccccHHHHccccccccCHH
Confidence 356666999999999999999 8 599999999999999 6 9999999999999999998654433
No 65
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8.9e-19 Score=127.01 Aligned_cols=55 Identities=29% Similarity=0.463 Sum_probs=50.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHH
Q 046813 31 SRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQ 90 (250)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Kr 90 (250)
.+..++++|+.+||..|..+ .||+..+|.+||.+| | |++++|+|||||||||+++
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l---~-L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYALN-AQPSAEELSKIADSV---N-LPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHTCSC
T ss_pred CCCCccHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh---C-cChhhcCcchhcccCCCCC
Confidence 34556799999999999999 599999999999999 6 9999999999999999875
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.71 E-value=1.1e-18 Score=146.65 Aligned_cols=65 Identities=22% Similarity=0.301 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHH
Q 046813 24 GTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQK 93 (250)
Q Consensus 24 ~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~ 93 (250)
...+.+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+| | |+++||+|||||||+|+||+.+
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~-yp~~~~r~~LA~~l---~-L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCP-KPSAHEITGLADSL---Q-LEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH---C-CChhhhhhhhHHhhHHHhhccC
Confidence 3456788999999999999999999994 99999999999999 6 9999999999999999998653
No 67
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=2.1e-18 Score=126.47 Aligned_cols=48 Identities=13% Similarity=0.500 Sum_probs=44.1
Q ss_pred HHHHHHHHHHh-cCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHH
Q 046813 38 EQINMLESLYA-QGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQ 90 (250)
Q Consensus 38 eQL~~LE~~F~-~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Kr 90 (250)
+|+.+||..|. .+ +||+..+|.+||++| | |+++||+|||||||+|+|+
T Consensus 10 ~~~~~LE~~F~~~~-~yp~~~~r~~LA~~l---~-LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 10 QPNAILEKVFTAIT-KHPDEKRLEGLSKQL---D-WDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp CHHHHHHHHHHTTC-SSCCHHHHHHHHHHH---C-SCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHcC-CCcCHHHHHHHHHHh---C-CCHHHHHHHHHHHHhccCC
Confidence 48999999995 56 699999999999999 5 9999999999999999884
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.70 E-value=3.9e-18 Score=126.31 Aligned_cols=52 Identities=25% Similarity=0.464 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 36 TKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 36 T~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
|++||.+||..|..++ ||+..+|.+||..| | |+++||++||||||+|+|+-+
T Consensus 12 ~~~Ql~~LE~~F~~~~-YPs~~er~eLA~~t---g-Lt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQ-FPDDAEVYRLIEVT---G-LARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGG-SCCHHHHHHHHHHH---C-CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCC-CCCHHHHHHHHHHh---C-cCHHHhhHhcccchhhhhccC
Confidence 6899999999999995 99999999999999 6 999999999999999999754
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-18 Score=128.72 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHH
Q 046813 33 WNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQK 93 (250)
Q Consensus 33 t~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~ 93 (250)
..+|.+|+..||..|..++ ||+..+|.+||.+| | |+++||+|||||||||+|+++.
T Consensus 9 ~~~t~~ql~~LE~~F~~~~-yp~~~~r~~LA~~l---~-Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQK-YLSAPERAHLAKNL---K-LTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHT---T-CCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHh---C-CChhheeecchhhhhhhhhhhh
Confidence 4678999999999999994 99999999999999 6 9999999999999999998653
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.68 E-value=4.7e-18 Score=141.22 Aligned_cols=61 Identities=25% Similarity=0.436 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHH
Q 046813 26 TLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQK 91 (250)
Q Consensus 26 ~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krk 91 (250)
.+.+|+|+.||.+|+..||..|..+ +||+..+|.+||..| | |+++||+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yps~~~r~~LA~~l---~-L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKS-PKPSLQQITHIANQL---G-LEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTC-SCCCHHHHHHHHHHT---T-CCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccC-CCCCHHHHHHHHHHc---C-CChhheeeccccccccccCC
Confidence 4577899999999999999999999 499999999999999 6 99999999999999999973
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.68 E-value=3.3e-18 Score=142.11 Aligned_cols=63 Identities=25% Similarity=0.327 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 25 TTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 25 ~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
....+|+|+.||.+|+.+||..|..+ +||+.++|.+||.+| | |+++||+|||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~la~~l---~-L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKEN-KRPSKELQITISQQL---G-LELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH---C-cCHHHhhhcChhhhccccccC
Confidence 34578899999999999999999999 599999999999999 6 999999999999999998754
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=4.6e-17 Score=118.44 Aligned_cols=57 Identities=25% Similarity=0.274 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHHHH
Q 046813 34 NPTKEQINMLESLYA---QGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQE 95 (250)
Q Consensus 34 ~fT~eQL~~LE~~F~---~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~~~ 95 (250)
.||++|+.+||..|. .+ +||+.++|.+||.+| | |+++||++||||||+|+|+...++
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~-pyp~~~~r~~La~~~---~-l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTH-PYPSEEQKKQLAQDT---G-LTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHHHSCC---
T ss_pred cCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHh---C-cCHHHhhhhhHHHHHHHhHHHHHH
Confidence 578999999999999 88 599999999999999 6 999999999999999999875544
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.56 E-value=1.6e-16 Score=137.71 Aligned_cols=65 Identities=18% Similarity=0.354 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHh-------------cCC----CCCCceeeecccchhH
Q 046813 25 TTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRA-------------YGH----IEGKNVFYWFQNHKAR 87 (250)
Q Consensus 25 ~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~-------------~G~----L~erqVqvWFQNRRAR 87 (250)
.+..+|.|+.||+.|+.+||..|..+ +||+..+|++||..|.. +|. |++.+|+|||||||+|
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~-~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHH-CCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 45678999999999999999999999 59999999999999920 111 9999999999999999
Q ss_pred HHH
Q 046813 88 QRQ 90 (250)
Q Consensus 88 ~Kr 90 (250)
+|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 875
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.47 E-value=8.2e-15 Score=129.85 Aligned_cols=67 Identities=16% Similarity=0.326 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHh-------------cC----CCCCCceeeeccc
Q 046813 21 GGGGTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRA-------------YG----HIEGKNVFYWFQN 83 (250)
Q Consensus 21 g~g~~~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~-------------~G----~L~erqVqvWFQN 83 (250)
..+..++.+|.|+.||++|+.+||..|..+ +||+..+|++||+.|.. +| .|++.+|+|||||
T Consensus 135 ~~~~~~k~RR~R~~ft~~ql~~Le~~F~~~-~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqN 213 (221)
T 2h8r_A 135 SEPTNKKMRRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFAN 213 (221)
T ss_dssp -------CCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHH
T ss_pred cccccCCCCCCCcCCCHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHH
Confidence 344567889999999999999999999999 59999999999999831 01 2899999999999
Q ss_pred chhHH
Q 046813 84 HKARQ 88 (250)
Q Consensus 84 RRAR~ 88 (250)
||++.
T Consensus 214 RR~~~ 218 (221)
T 2h8r_A 214 RRKEE 218 (221)
T ss_dssp HHTTC
T ss_pred hhhhh
Confidence 99864
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-14 Score=108.62 Aligned_cols=48 Identities=25% Similarity=0.578 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHH
Q 046813 36 TKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQ 88 (250)
Q Consensus 36 T~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~ 88 (250)
=++|+.+||.+|..++ +|+.++|.+||..| | |+.++|+|||||||+++
T Consensus 13 ~k~ql~~Lk~yF~~n~-~Ps~eei~~LA~~l---g-L~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 13 YKDHMSVLKAYYAMNM-EPNSDELLKISIAV---G-LPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp STHHHHHHHHHHHHCS-SCCHHHHHHHHHHH---T-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCCHHHHHHHHHHh---C-CCHHHHHHHHhhccccc
Confidence 3789999999999995 99999999999999 7 99999999999999844
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.42 E-value=5.1e-14 Score=109.35 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHHHH
Q 046813 33 WNPTKEQINMLESLYAQ---GIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQE 95 (250)
Q Consensus 33 t~fT~eQL~~LE~~F~~---~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~~~ 95 (250)
.-|+++++.+|+..|.. + +||+.++|.+||+++ | |+++||++||||||+|+|+...+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~n-pYPs~~ek~~LA~~t---g-Lt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYN-AYPSEQEKALLSQQT---H-LSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGG-GSCCHHHHHHHHHHS---S-SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHH---C-cCHHHHHHHHHHHHHHhhhHHHHh
Confidence 35789999999999987 6 599999999999999 6 999999999999999999875443
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.41 E-value=1.3e-14 Score=129.96 Aligned_cols=57 Identities=16% Similarity=0.378 Sum_probs=52.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 28 SSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 28 ~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
.++.|..++.+|+..||+.|+.+ +||+..+|.+||++| | |+++||+|||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~-~yp~~~~~~~la~~~---~-l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRK-QSLNSKEKEEVAKKC---G-ITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH---T-SCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcC-CCcCHHHHHHHHHHH---C-cCHHHhhHhhhhcccccC
Confidence 34677889999999999999999 599999999999999 6 999999999999999975
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.93 E-value=6.8e-11 Score=78.65 Aligned_cols=23 Identities=17% Similarity=0.544 Sum_probs=20.3
Q ss_pred CceeeecccchhHHHHHHHHHHH
Q 046813 75 KNVFYWFQNHKARQRQKQKQERT 97 (250)
Q Consensus 75 rqVqvWFQNRRAR~Krkq~~~~~ 97 (250)
+||+|||||||||||+++++.+.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 59999999999999999887553
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.68 E-value=0.18 Score=37.57 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecc
Q 046813 37 KEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQ 82 (250)
Q Consensus 37 ~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQ 82 (250)
+--.+.|+.+|... +....+....|+.+- +|+-.||+-||-
T Consensus 15 p~~~e~L~~Yy~~h-k~L~EeDl~~L~~ks----kms~qqvkdwFa 55 (70)
T 2ys9_A 15 PPDIQPLERYWAAH-QQLRETDIPQLSQAS----RLSTQQVLDWFD 55 (70)
T ss_dssp CCCCHHHHHHHHHT-CCCCTTHHHHHHHHT----TCCHHHHHHHHH
T ss_pred CCcchHHHHHHHHh-cccchhhHHHHHHHh----CCCHHHHHHHHH
Confidence 44468999999999 588999999999998 599999999994
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=74.90 E-value=1.8 Score=32.76 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=37.3
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHH
Q 046813 30 SSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQ 88 (250)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~ 88 (250)
++|..||.++...+-..+..+. ... ..+||+++ | |+...|..|..+++...
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g-~~~---~~~~A~~~---g-vs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENP-DLR---KGEIARRF---N-IPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCT-TSC---HHHHHHHH---T-CCHHHHHHHHHTHHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCC-CCc---HHHHHHHh---C-CCHHHHHHHHhchhhhc
Confidence 4677889999877766664442 444 34789999 7 99999999987766543
No 81
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=71.18 E-value=3.3 Score=29.92 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 34 NPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
.+++.|.++|.-.|-.+ + + -.+||+.| | |++..|+.+...=|.|.|
T Consensus 37 ~L~~~~r~vl~l~~~~g--~-s---~~eIA~~l---g-is~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG--W-S---TAQIATDL---G-IAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp TSCHHHHHHHHHHHTSC--C-C---HHHHHHHH---T-SCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--C-C---HHHHHHHH---C-cCHHHHHHHHHHHHHHHH
Confidence 36788899999888777 3 2 36899999 6 999999877654443333
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=69.90 E-value=1.6 Score=29.42 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecc
Q 046813 32 RWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQ 82 (250)
Q Consensus 32 Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQ 82 (250)
|..||+|....+..++..+ ........+||+++ | |+...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g--~s~~~~~~~vA~~~---g-Is~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND--NDCKGNQRATARKY---N-IHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC--TTTTTCHHHHHHHT---T-SCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC--CCcchHHHHHHHHH---C-cCHHHHHHHHH
Confidence 4568899887776666665 22111145899999 7 99999999964
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=67.84 E-value=4.2 Score=29.40 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=30.5
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeec
Q 046813 30 SSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWF 81 (250)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWF 81 (250)
+++..||.++....-..+..+ . + ..+||++| | |+...|..|.
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g--~-s---~~~iA~~~---g-Is~sTl~rW~ 59 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG--E-S---KASVARDI---G-VPESTLRGWC 59 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT--C-C---HHHHHHHH---T-CCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC--C-C---HHHHHHHH---C-cCHHHHHHHH
Confidence 456678899865555566654 2 3 46899999 7 9999999885
No 84
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=64.11 E-value=2.1 Score=26.57 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhH
Q 046813 35 PTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKAR 87 (250)
Q Consensus 35 fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR 87 (250)
++.+++..+...+..+ . + ..+||+.| | ++...|..|+.....+
T Consensus 6 ~~~~~~~~i~~l~~~g--~-s---~~~ia~~l---g-vs~~Tv~r~l~~~~~~ 48 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H-P---RQQLAIIF---G-IGVSTLYRYFPASSIK 48 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C-C---HHHHHHTT---S-CCHHHHHHHSCTTC--
T ss_pred CCHHHHHHHHHHHHcC--C-C---HHHHHHHH---C-CCHHHHHHHHHHcccc
Confidence 4566776666667655 2 3 46899999 6 9999999999765443
No 85
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=64.03 E-value=2.9 Score=27.93 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeeccc
Q 046813 34 NPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQN 83 (250)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQN 83 (250)
.+++.|..+|...|-.+ + + -.+||..| | +++..|+.|...
T Consensus 15 ~L~~~~r~il~l~~~~g--~-s---~~eIA~~l---g-is~~tv~~~~~r 54 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG--L-S---YADAAAVC---G-CPVGTIRSRVAR 54 (70)
T ss_dssp SSCHHHHHHHHHHHTSC--C-C---HHHHHHHH---T-SCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--C-C---HHHHHHHH---C-cCHHHHHHHHHH
Confidence 36799999999988776 3 2 35899999 6 999988876543
No 86
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=63.75 E-value=4.5 Score=24.44 Aligned_cols=40 Identities=5% Similarity=0.194 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeeccc
Q 046813 34 NPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQN 83 (250)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQN 83 (250)
.++.++...+-..+..+ + + ..+||+.| | ++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g--~-s---~~~IA~~l---g-is~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN--V-S---LHEMSRKI---S-RSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT--C-C---HHHHHHHH---T-CCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC--C-C---HHHHHHHH---C-cCHHHHHHHHhh
Confidence 45688776666667665 3 3 46899999 6 999999988754
No 87
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=62.18 E-value=5.1 Score=28.98 Aligned_cols=42 Identities=29% Similarity=0.394 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHHh-c-CCCCCCHHHHHHHHHHhHhcCCCCCCceeeeccc
Q 046813 32 RWNPTKEQINMLESLYA-Q-GIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQN 83 (250)
Q Consensus 32 Rt~fT~eQL~~LE~~F~-~-~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQN 83 (250)
|..||.++....-..+. . + . + ..+||+++ | |+...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g--~-s---~~~ia~~~---g-Is~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG--A-S---LQQIANDL---G-INRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG--S-C---HHHHHHHH---T-SCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--C-h---HHHHHHHH---C-cCHHHHHHHHHH
Confidence 34677888866555553 3 3 2 2 46899999 7 999999999753
No 88
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=61.47 E-value=8.5 Score=29.59 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 34 NPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
.+++.|.++|...|..+ + + -.+||+.| | +++..|+.|.+.=|.+.|+.-
T Consensus 22 ~L~~~~r~vl~l~y~~g--~-s---~~EIA~~l---g-iS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD--Y-S---LAEIADEF---G-VSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC--C-C---HHHHHHHH---T-CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--C-C---HHHHHHHH---C-cCHHHHHHHHHHHHHHHHHHH
Confidence 46799999999998777 3 2 36899999 6 999999999876666665443
No 89
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=58.61 E-value=6.6 Score=29.49 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeeccc
Q 046813 34 NPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQN 83 (250)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQN 83 (250)
.+++.|..+|. .|-.+ + + -.+||+.| | ++...|+.+.+.
T Consensus 109 ~L~~~~r~v~~-~~~~g--~-s---~~EIA~~l---g-is~~tV~~~~~r 147 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG--Y-S---YREIATIL---S-KNLKSIDNTIQR 147 (164)
T ss_dssp HSCHHHHHHHH-HHTTT--C-C---HHHHHHHH---T-CCHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC--C-C---HHHHHHHH---C-CCHHHHHHHHHH
Confidence 46688888888 66665 3 2 36899999 6 999999876643
No 90
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=57.92 E-value=9.8 Score=29.05 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHH
Q 046813 34 NPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 92 (250)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq 92 (250)
.+++.|..+|.-.|-.+ + + -.+||+.| | +++..|+.+...=|.+.|+.-
T Consensus 25 ~L~~~~r~vl~l~~~~g--~-s---~~EIA~~l---g-iS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED--Y-S---LSEIADTF---N-VSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSC--C-C---HHHHHHHT---T-CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--C-C---HHHHHHHH---C-cCHHHHHHHHHHHHHHHHHHH
Confidence 36789999999988877 3 2 36899999 6 999999988876666665543
No 91
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=54.70 E-value=0.15 Score=41.45 Aligned_cols=29 Identities=3% Similarity=-0.206 Sum_probs=20.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCC
Q 046813 26 TLSSSSRWNPTKEQINMLESLYAQGIRTPS 55 (250)
Q Consensus 26 ~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs 55 (250)
...+|+|+.||.+|+++|+..|+.++ +|.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~-~~~ 162 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANP-VEV 162 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCC-CCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCC-Ccc
Confidence 55789999999999999999999994 876
No 92
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=51.44 E-value=8.2 Score=23.83 Aligned_cols=10 Identities=70% Similarity=1.624 Sum_probs=4.1
Q ss_pred CCCCCCCCCC
Q 046813 17 GGGGGGGGTT 26 (250)
Q Consensus 17 gg~~g~g~~~ 26 (250)
||+||||...
T Consensus 2 gggggggaas 11 (29)
T 1cn3_F 2 GGGGGGGAAS 11 (29)
T ss_dssp CCCCCSTTTC
T ss_pred CCCCCCcccc
Confidence 3444444443
No 93
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.66 E-value=9.1 Score=26.49 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=34.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCc-eeeecccch
Q 046813 26 TLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKN-VFYWFQNHK 85 (250)
Q Consensus 26 ~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erq-VqvWFQNRR 85 (250)
...++..-.+|+++..++++.|... +.. =..||..| +.-+..+ |..|+.+++
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~---gk~--w~~Ia~~l---~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQH---PKN--FGLIASYL---ERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHS---TTC--HHHHHHHC---TTSCHHHHHHHHHHHTC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHh---CCC--HHHHHHHc---CCCCHHHHHHHHHHhcC
Confidence 3344566677899999999999985 332 24778777 3234333 556666554
No 94
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=48.24 E-value=9.3 Score=28.60 Aligned_cols=43 Identities=2% Similarity=-0.001 Sum_probs=32.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCce
Q 046813 28 SSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNV 77 (250)
Q Consensus 28 ~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqV 77 (250)
...+=..+|.+|..+|..+++.+. ++..++ +||.++ + |+...|
T Consensus 11 ~~~k~~~Lt~~q~~Vl~~I~~~g~--~gi~qk-eLa~~~---~-l~~~tv 53 (91)
T 2dk5_A 11 NAGKMKGSDNQEKLVYQIIEDAGN--KGIWSR-DVRYKS---N-LPLTEI 53 (91)
T ss_dssp CCCCCCCSCSSHHHHHHHHHHHCT--TCEEHH-HHHHHT---T-CCHHHH
T ss_pred HHhhhcCCCHHHHHHHHHHHHcCC--CCcCHH-HHHHHH---C-CCHHHH
Confidence 345566788999999999998652 455664 999999 4 887654
No 95
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=47.31 E-value=7.7 Score=28.42 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecc
Q 046813 34 NPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQ 82 (250)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQ 82 (250)
.+|+.|.++|.-++ .+ + + ..+||+.| | +++..|+.+..
T Consensus 27 ~Lt~~e~~vl~l~~-~g--~-s---~~eIA~~l---~-is~~tV~~~l~ 64 (95)
T 3c57_A 27 GLTDQERTLLGLLS-EG--L-T---NKQIADRM---F-LAEKTVKNYVS 64 (95)
T ss_dssp CCCHHHHHHHHHHH-TT--C-C---HHHHHHHH---T-CCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-cC--C-C---HHHHHHHH---C-cCHHHHHHHHH
Confidence 57899999999973 44 2 2 36899999 6 99998876543
No 96
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=46.19 E-value=4.9 Score=28.71 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHH
Q 046813 33 WNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQ 88 (250)
Q Consensus 33 t~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~ 88 (250)
-.+|+.|.++|.-+ ..+ + + -.+||+.| | +++..|+.+..+=+.|.
T Consensus 20 ~~Lt~~e~~vl~l~-~~g--~-s---~~eIA~~l---~-is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 20 NQLTPRERDILKLI-AQG--L-P---NKMIARRL---D-ITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GGSCHHHHHHHHHH-TTT--C-C---HHHHHHHH---T-SCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHH-HcC--C-C---HHHHHHHH---C-cCHHHHHHHHHHHHHHH
Confidence 35789999999984 444 3 2 36899999 6 99999987665443333
No 97
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=45.99 E-value=7.5 Score=27.72 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHhHhcCCCCCCceeeec
Q 046813 33 WNPTKEQINMLESLYAQG----IRTPSAEQIQQITTRLRAYGHIEGKNVFYWF 81 (250)
Q Consensus 33 t~fT~eQL~~LE~~F~~~----~~yPs~e~R~qLA~~L~~~G~L~erqVqvWF 81 (250)
|.+|++|+..|++.|..- ..+.+.++-..+-+.+ | +++..|..+|
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~---g-~~~~~~~~i~ 49 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS---K-LPILELSHIW 49 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH---S-SCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc---C-CCHHHHHHHH
Confidence 788999999999999752 2355655555554555 7 8766655444
No 98
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=44.61 E-value=15 Score=27.58 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhH
Q 046813 32 RWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKAR 87 (250)
Q Consensus 32 Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR 87 (250)
.-.+|+.|.++|+-++ .+ + + -.+||+.| | |++..|+.+.++=+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G--~-s---~~EIA~~L---~-iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EG--F-L---VTEIAKKL---N-RSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HT--C-C---HHHHHHHH---T-SCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cC--C-C---HHHHHHHH---C-cCHHHHHHHHHHHHHH
Confidence 4568899999998865 44 2 2 26899999 5 9999998776643333
No 99
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=43.96 E-value=7.7 Score=26.04 Aligned_cols=47 Identities=23% Similarity=0.200 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 32 RWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 32 Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
-..+|+.|.++|..+ ..+ + + -.+||+.| | ++...|..+..+=+.|.+
T Consensus 9 ~~~L~~~e~~il~~~-~~g--~-s---~~eIA~~l---~-is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELL-VQD--K-T---TKEIASEL---F-ISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHH-TTT--C-C---HHHHHHHH---T-SCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH-HcC--C-C---HHHHHHHH---C-CCHHHHHHHHHHHHHHHC
Confidence 345789999999984 444 3 3 35899999 6 999999877664444433
No 100
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=42.74 E-value=13 Score=29.08 Aligned_cols=43 Identities=7% Similarity=-0.032 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhH
Q 046813 35 PTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKAR 87 (250)
Q Consensus 35 fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR 87 (250)
+++.|..+|.-.|-.+ +. -.+||+.| | +++..|+.+...=|.|
T Consensus 141 L~~~~r~vl~l~~~~g--~s----~~EIA~~l---g-is~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 141 LPEDLRMAITLRELDG--LS----YEEIAAIM---D-CPVGTVRSRIFRAREA 183 (194)
T ss_dssp SCHHHHHHHHHHHTTC--CC----HHHHHHHT---T-SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC--CC----HHHHHHHH---C-CCHHHHHHHHHHHHHH
Confidence 4577777777777666 32 35889999 6 9999998766533333
No 101
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=41.76 E-value=7 Score=25.24 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=29.5
Q ss_pred CCC--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecc
Q 046813 34 NPT--KEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQ 82 (250)
Q Consensus 34 ~fT--~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQ 82 (250)
.++ +++...+...+..+ + + ..+||+.| | ++...|..|..
T Consensus 13 ~l~~~~~~~~~i~~l~~~g--~-s---~~eIA~~l---g-is~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKMG--Y-T---VQQIANAL---G-VSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHTT--C-C---HHHHHHHH---T-SCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHcC--C-C---HHHHHHHH---C-cCHHHHHHHHH
Confidence 566 77877777777666 3 3 46899999 6 99999988764
No 102
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=41.32 E-value=14 Score=29.55 Aligned_cols=46 Identities=9% Similarity=0.079 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 34 NPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
.+++.|..+|...|-.+ + + -.+||+.| | +++..|+.+...=|.|.|
T Consensus 187 ~L~~~~r~vl~l~~~~g--~-s---~~EIA~~l---g-is~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE--L-P---AKEVAKIL---E-TSVSRVSQLKAKALERLR 232 (239)
T ss_dssp TSCHHHHHHHHHHHTSC--C-C---HHHHHHHT---T-SCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC--C-C---HHHHHHHh---C-CCHHHHHHHHHHHHHHHH
Confidence 35678888888888766 3 2 35889999 6 999999876654333333
No 103
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=40.90 E-value=54 Score=25.19 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=26.7
Q ss_pred CCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhHhcCCCCC
Q 046813 30 SSRWNPTKEQINMLESLYAQ----GIRTPSAEQIQQITTRLRAYGHIEG 74 (250)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F~~----~~~yPs~e~R~qLA~~L~~~G~L~e 74 (250)
.+|..+|++|++.|.++|.. +..+.+..+-..+-+.| | +.+
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~l---g-~~~ 49 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSL---G-RVP 49 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHT---T-SCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHc---C-CCc
Confidence 45677889999999999964 23467765544444444 7 554
No 104
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=40.43 E-value=15 Score=25.11 Aligned_cols=39 Identities=5% Similarity=0.140 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecc
Q 046813 34 NPTKEQINMLESLYA----QGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQ 82 (250)
Q Consensus 34 ~fT~eQL~~LE~~F~----~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQ 82 (250)
.+++.|.++|...|- .+ + + -.+||..| | +++..|+.|..
T Consensus 10 ~L~~~er~il~l~~~l~~~~~--~-s---~~eIA~~l---~-is~~tV~~~~~ 52 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGRE--H-T---LEEVGAYF---G-VTRERIRQIEN 52 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC--C-C---HHHHHHHH---T-CCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCC--C-C---HHHHHHHH---C-CCHHHHHHHHH
Confidence 467999999999996 44 2 2 35899999 6 99999987654
No 105
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=38.22 E-value=8.8 Score=29.27 Aligned_cols=47 Identities=9% Similarity=0.115 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 37 KEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 37 ~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
..=++...++|.+. .|-. -...+||++. | ++..-|...|.||-.=..
T Consensus 19 ~~Il~aa~~l~~~~-G~~~-~t~~~Ia~~a---g-vs~~t~Y~~F~sK~~Ll~ 65 (211)
T 3him_A 19 ARIRAAAIEVFAAK-GYGA-TTTREIAASL---D-MSPGAVYPHYKTKESLLY 65 (211)
T ss_dssp HHHHHHHHHHHHHH-CSTT-CCHHHHHHHT---T-CCTTSSTTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCc-CCHHHHHHHh---C-CCcChhhhcCCCHHHHHH
Confidence 45567777888776 3643 3457999999 7 999999999999876444
No 106
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=36.93 E-value=6 Score=27.10 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 35 PTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 35 fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
+|+.|.++|.. |..+ + + ..+||+.| | +++..|+.+..+=+.|.+
T Consensus 17 L~~~e~~vl~l-~~~g--~-s---~~eIA~~l---~-is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSA-VVAG--L-P---NKSIAYDL---D-ISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHH-HTTT--C-C---HHHHHHHT---T-SCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH-HHcC--C-C---HHHHHHHH---C-cCHHHHHHHHHHHHHHHc
Confidence 57889999988 4444 3 2 35899999 6 999999876654443333
No 107
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=36.69 E-value=8.5 Score=30.14 Aligned_cols=43 Identities=7% Similarity=0.113 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhH
Q 046813 39 QINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKAR 87 (250)
Q Consensus 39 QL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR 87 (250)
=++...++|.+. .|-. -...+||++. | ++..-|...|.||..=
T Consensus 33 Il~aa~~lf~~~-G~~~-~tv~~IA~~a---g-vs~~t~Y~~F~sK~~L 75 (215)
T 2qko_A 33 LVNAAIEVLARE-GARG-LTFRAVDVEA---N-VPKGTASNYFPSRDDL 75 (215)
T ss_dssp HHHHHHHHHHHT-CTTT-CCHHHHHHHS---S-STTTCHHHHCSCHHHH
T ss_pred HHHHHHHHHHHh-Chhh-ccHHHHHHHc---C-CCcchHHHhCCCHHHH
Confidence 456677788877 3643 3467999999 7 9999999999997553
No 108
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=36.29 E-value=22 Score=26.39 Aligned_cols=41 Identities=5% Similarity=0.163 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeeccc
Q 046813 33 WNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQN 83 (250)
Q Consensus 33 t~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQN 83 (250)
..+|.++...+-..+..+ . + ..+||+.| | ++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G--~-s---~~~ia~~l---g-is~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN--V-S---LHEMSRKI---S-RSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT--C-C---HHHHHHHH---T-CCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC--C-C---HHHHHHHH---C-cCHHHHHHHHHc
Confidence 356789888888888766 3 3 46889999 7 999999999864
No 109
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=35.68 E-value=5.2 Score=30.83 Aligned_cols=46 Identities=15% Similarity=0.406 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 38 EQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 38 eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
.=++...++|.+. .|-. -...+||++. | ++..-|..+|.||-.=..
T Consensus 35 ~Il~aa~~l~~~~-G~~~-~tv~~Ia~~a---g-vs~~t~Y~~F~sK~~Ll~ 80 (218)
T 3dcf_A 35 QIIKVATELFREK-GYYA-TSLDDIADRI---G-FTKPAIYYYFKSKEDVLF 80 (218)
T ss_dssp HHHHHHHHHHHHT-CTTT-CCHHHHHHHH---T-CCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHc-Cccc-CcHHHHHHHh---C-CCHHHHHHHcCCHHHHHH
Confidence 3446677788777 3643 3457999999 7 999999999999876443
No 110
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=32.11 E-value=39 Score=24.66 Aligned_cols=50 Identities=6% Similarity=0.013 Sum_probs=34.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHhHhcCC-CCCCceeeec
Q 046813 29 SSSRWNPTKEQINMLESLYAQG----IRTPSAEQIQQITTRLRAYGH-IEGKNVFYWF 81 (250)
Q Consensus 29 rR~Rt~fT~eQL~~LE~~F~~~----~~yPs~e~R~qLA~~L~~~G~-L~erqVqvWF 81 (250)
.+....+|.+|+..|.+.|..- ..+.+.++-..+-+.| |. +++.+|+.+|
T Consensus 24 ~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~l---g~~~~~~ei~~l~ 78 (100)
T 2lv7_A 24 EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSL---GYMPNEVELEVII 78 (100)
T ss_dssp TCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHH---TCCCCTTTHHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh---CCCCCHHHHHHHH
Confidence 3456678999999999999642 3577876666666665 62 5566665444
No 111
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=31.41 E-value=7.1 Score=28.09 Aligned_cols=45 Identities=20% Similarity=0.143 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHH
Q 046813 33 WNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQ 88 (250)
Q Consensus 33 t~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~ 88 (250)
-.+|+.|.++|.-++ .+ +.. .+||+.| | +++..|+.+..+=|.|.
T Consensus 28 ~~Lt~~e~~vl~l~~-~g--~s~----~eIA~~l---~-is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 28 EMLTEREMEILLLIA-KG--YSN----QEIASAS---H-ITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GGCCSHHHHHHHHHH-TT--CCT----THHHHHH---T-CCHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHH-cC--CCH----HHHHHHH---C-cCHHHHHHHHHHHHHHH
Confidence 357899999998854 44 222 4899999 6 99999987665443333
No 112
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=30.95 E-value=24 Score=25.77 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=28.7
Q ss_pred CCCCCHHHHHH-HHHHHhcCCCCCCH-HHHHHHHHHhHhcCCCCCCceeeec
Q 046813 32 RWNPTKEQINM-LESLYAQGIRTPSA-EQIQQITTRLRAYGHIEGKNVFYWF 81 (250)
Q Consensus 32 Rt~fT~eQL~~-LE~~F~~~~~yPs~-e~R~qLA~~L~~~G~L~erqVqvWF 81 (250)
+..||.++... ++.+...+..+++. ....+||+++ | |++..|..|-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~---g-Is~~tl~~W~ 51 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKI---G-CTPETLRVWV 51 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---T-SCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHH---C-cCHHHHHHHH
Confidence 34677988754 44444432002221 3467899999 7 9999998773
No 113
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=30.34 E-value=7.2 Score=30.33 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 35 PTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 35 fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
+++.|..+|.-.|-.+. . -.+||+.| | +++..|+.+.+.=|.+.|
T Consensus 136 L~~~~r~vl~l~~~~g~--s----~~eIA~~l---g-is~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDL--T----HRELAAET---G-LPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp SCHHHHHHHHHHHHSCC--S----SCCSTTTC---C-CCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC--C----HHHHHHHH---C-cCHHHHHHHHHHHHHHHH
Confidence 34555566665555542 1 13678888 6 999888776654444433
No 114
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=30.26 E-value=47 Score=25.99 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=34.0
Q ss_pred CCCCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHH-HhHhc--CCCCCCceeeeccc
Q 046813 29 SSSRWNPTKEQINMLESLY-AQGIRTPSAEQIQQITT-RLRAY--GHIEGKNVFYWFQN 83 (250)
Q Consensus 29 rR~Rt~fT~eQL~~LE~~F-~~~~~yPs~e~R~qLA~-~L~~~--G~L~erqVqvWFQN 83 (250)
+++|.++|-+|...|=..+ +.++ -.+ ..+||+ --.+| | ++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~-~~~---q~~la~wa~~~f~~~-is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQN-RSG---QQDLIEWFREKFGKD-ISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSS-CCC---HHHHHHHHHHHHSSC-CSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHHHCCC-CcHHHHHHHHhh
Confidence 6789999999999999999 5553 333 346676 00124 5 778888877644
No 115
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=29.62 E-value=13 Score=26.71 Aligned_cols=45 Identities=7% Similarity=0.097 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhHhcCCCCCCceeeec
Q 046813 33 WNPTKEQINMLESLYAQ----GIRTPSAEQIQQITTRLRAYGHIEGKNVFYWF 81 (250)
Q Consensus 33 t~fT~eQL~~LE~~F~~----~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWF 81 (250)
|.+|.+|+..|++.|.. +..+.+.++- ..-|...| +++..|..+|
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el---~~~l~~~g-~~~~~~~~i~ 50 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEV---REIFLKTG-LPSTLLAHIW 50 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHH---HHHHHTTT-CCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHH---HHHHHHcC-CCHHHHHHHH
Confidence 67889999999999964 2245665544 44444446 7765554443
No 116
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=29.13 E-value=68 Score=24.75 Aligned_cols=40 Identities=15% Similarity=0.048 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeeccc
Q 046813 34 NPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQN 83 (250)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQN 83 (250)
.+|.++...+-..+..+ + + ..+||+.| | ++...|..|...
T Consensus 25 ~~s~e~r~~ii~l~~~G--~-s---~~~IA~~l---g-is~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLAHQG--V-R---PCDISRQL---R-VSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHHHHT--C-C---HHHHHHHH---T-CCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcC--C-C---HHHHHHHH---C-cCHHHHHHHHHH
Confidence 57788887777778766 2 3 45889999 6 999999999864
No 117
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=28.98 E-value=16 Score=24.72 Aligned_cols=38 Identities=5% Similarity=0.152 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHH----hcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeec
Q 046813 34 NPTKEQINMLESLY----AQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWF 81 (250)
Q Consensus 34 ~fT~eQL~~LE~~F----~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWF 81 (250)
.+++.|.++|...| ..+ + + -.+||+.| | +++..|+.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g--~-s---~~eIA~~l---g-is~~tV~~~~ 46 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD--Y-T---LEEVGKQF---D-VTRERIRQIE 46 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC--C-C---HHHHHHHH---T-CCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCC--C-C---HHHHHHHH---C-cCHHHHHHHH
Confidence 36799999999999 344 2 2 35899999 6 9998887543
No 118
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=28.92 E-value=8.5 Score=31.26 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 40 INMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 40 L~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
|+.-.++|.+. .|- .-...+||++. | |+..-|...|.||..=..
T Consensus 49 l~AA~~lf~~~-G~~-~~t~~~IA~~a---G-vs~~tlY~~F~sK~~L~~ 92 (255)
T 3g1o_A 49 LATAENLLEDR-PLA-DISVDDLAKGA---G-ISRPTFYFYFPSKEAVLL 92 (255)
T ss_dssp HHHHHHHHTTS-CGG-GCCHHHHHHHH---T-CCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHc-CCc-cCcHHHHHHHh---C-CCHHHHHHHcCCHHHHHH
Confidence 66677788777 353 33467999999 7 999999999999876544
No 119
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=28.70 E-value=23 Score=25.87 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeec
Q 046813 26 TLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWF 81 (250)
Q Consensus 26 ~~~rR~Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWF 81 (250)
......-..+|+.|.++|.-++ .+ + + ..+||+.| | |+++.|+...
T Consensus 21 ~~~~~~~~~Lt~rE~~Vl~l~~-~G--~-s---~~eIA~~L---~-iS~~TV~~~~ 65 (90)
T 3ulq_B 21 MSSQKEQDVLTPRECLILQEVE-KG--F-T---NQEIADAL---H-LSKRSIEYSL 65 (90)
T ss_dssp --------CCCHHHHHHHHHHH-TT--C-C---HHHHHHHH---T-CCHHHHHHHH
T ss_pred ccccccccCCCHHHHHHHHHHH-cC--C-C---HHHHHHHH---C-cCHHHHHHHH
Confidence 3344556678999999999887 44 3 2 36899999 5 9999887443
No 120
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=27.29 E-value=25 Score=21.49 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=10.1
Q ss_pred cchhHHHHHHHHH
Q 046813 83 NHKARQRQKQKQE 95 (250)
Q Consensus 83 NRRAR~Krkq~~~ 95 (250)
|||-|||..+++.
T Consensus 8 nRRRRWR~Rq~qi 20 (26)
T 1etf_B 8 NRRRRWRERQRAA 20 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8889998877654
No 121
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=27.09 E-value=20 Score=25.52 Aligned_cols=40 Identities=5% Similarity=0.123 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHhHhcCCCCCCceeeeccc
Q 046813 34 NPTKEQINMLESLYA----QGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQN 83 (250)
Q Consensus 34 ~fT~eQL~~LE~~F~----~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQN 83 (250)
.+++.|..+|...|- .+ + + -.+||..| | ++...|+.|...
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~--~-s---~~EIA~~l---g-is~~tV~~~~~r 61 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKP--K-T---LEEVGQYF---N-VTRERIRQIEVK 61 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC--C-C---HHHHHHHH---T-CCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCC--C-C---HHHHHHHH---C-CCHHHHHHHHHH
Confidence 367899999999986 44 2 3 36889999 6 999999876543
No 122
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=26.52 E-value=15 Score=23.90 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHH
Q 046813 38 EQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQ 88 (250)
Q Consensus 38 eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~ 88 (250)
.|.++|.- +..+ +.. .+||+.| | +++..|+.+..+=+.|.
T Consensus 2 re~~vl~l-~~~g--~s~----~eIA~~l---~-is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 2 RERQVLKL-IDEG--YTN----HGISEKL---H-ISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHHH-HHTS--CCS----HHHHHHT---C-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHcC--CCH----HHHHHHh---C-CCHHHHHHHHHHHHHHH
Confidence 46777877 4455 222 5899999 6 99999987665444333
No 123
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=26.42 E-value=14 Score=29.47 Aligned_cols=42 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchh
Q 046813 35 PTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKA 86 (250)
Q Consensus 35 fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRA 86 (250)
+++.|..+|.-.|-.+ +. -.+||+.| | |++..|+.+...=|.
T Consensus 199 L~~~~r~vl~l~~~~g--~s----~~EIA~~l---g-is~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 199 LDERERLIVYLRYYKD--QT----QSEVASRL---G-ISQVQMSRLEKKILQ 240 (243)
T ss_dssp ----------------------------------------------------
T ss_pred CCHHHHHHHHHHHhcC--CC----HHHHHHHH---C-cCHHHHHHHHHHHHH
Confidence 5567777777766555 22 35899999 6 999999988764433
No 124
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=25.91 E-value=39 Score=27.82 Aligned_cols=54 Identities=7% Similarity=0.128 Sum_probs=34.6
Q ss_pred CCCCCCCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHH
Q 046813 29 SSSRWNPTKEQ-INMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQ 88 (250)
Q Consensus 29 rR~Rt~fT~eQ-L~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~ 88 (250)
+++|...|.++ ++.-.++|... .|-.. ...+||+++ | ++..-|...|.||..=.
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~~-G~~~~-s~~~IA~~a---G-vs~~tlY~hF~~K~~Ll 64 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDTV-GERGL-TFRALAERL---A-TGPGAIYWHITGKAELL 64 (237)
T ss_dssp ------CCHHHHHHHHHHHHHHT-TTTTC-CHHHHHHHH---T-SCGGGGGGTCCCHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhc-CcccC-CHHHHHHHH---C-CChHHHHHhcCCHHHHH
Confidence 33444455655 45566777776 35433 356999999 7 99999999999975533
No 125
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=25.70 E-value=32 Score=24.70 Aligned_cols=39 Identities=13% Similarity=0.023 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecc
Q 046813 34 NPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQ 82 (250)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQ 82 (250)
.++.++...+-..+..+ + + ..+||+.| | ++...|..|..
T Consensus 17 ~~s~~~r~~i~~~~~~g--~-s---~~~ia~~l---g-is~~Tv~~w~~ 55 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADG--I-R---PCVISRQL---R-VSHGCVSKILN 55 (128)
T ss_dssp CCCHHHHHHHHHHHHTT--C-C---HHHHHHHH---T-CCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--C-C---HHHHHHHH---C-cCHHHHHHHHH
Confidence 47788887777777755 3 3 35889999 6 99999998874
No 126
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=24.34 E-value=29 Score=28.73 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHH
Q 046813 32 RWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQ 88 (250)
Q Consensus 32 Rt~fT~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~ 88 (250)
...+|+.|.++|.-.. .+ + + -++||+.| | |+++.|+....|=+.|.
T Consensus 173 ~~~Lt~~e~~vl~~~~-~g--~-s---~~eIa~~l---~-is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 173 KQMLSPREMLCLVWAS-KG--K-T---ASVTANLT---G-INARTVQHYLDKARAKL 218 (236)
T ss_dssp GGSCCHHHHHHHHHHH-TT--C-C---HHHHHHHH---C-CCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cC--C-C---HHHHHHHH---C-cCHHHHHHHHHHHHHHh
Confidence 4568899999998864 44 2 2 25889999 6 99999987665444443
No 127
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=24.15 E-value=21 Score=28.45 Aligned_cols=46 Identities=7% Similarity=0.230 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 38 EQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 38 eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
.=++...++|.+. .|-. -...+||++. | ++..-|...|.||-.=..
T Consensus 34 ~Il~aA~~lf~~~-G~~~-~t~~~IA~~A---g-vs~~t~Y~~F~sKe~Ll~ 79 (230)
T 2iai_A 34 TLLSVAVQVFIER-GYDG-TSMEHLSKAA---G-ISKSSIYHHVTGKEELLR 79 (230)
T ss_dssp CHHHHHHHHHHHH-CTTT-CCHHHHHHHH---T-SCHHHHTTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHc-Cccc-cCHHHHHHHH---C-CChhHHHHhCCCHHHHHH
Confidence 3577778888776 3643 3457999999 7 999999999999876444
No 128
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=23.63 E-value=23 Score=28.00 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=30.4
Q ss_pred CCCCCCCHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHhHhcCCCCCCcee-ee
Q 046813 30 SSRWNPTKEQINMLESLYAQGI---RTPSAEQIQQITTRLRAYGHIEGKNVF-YW 80 (250)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F~~~~---~yPs~e~R~qLA~~L~~~G~L~erqVq-vW 80 (250)
...|..|++++..++++|..-. .+.+.+ ++..-|.+.| |++..+. ||
T Consensus 22 ~~~W~it~ee~~~y~~iF~~lD~~dG~Isg~---elr~~~~~sg-Lp~~~L~~Iw 72 (121)
T 3fia_A 22 LDTWAITVEERAKHDQQFHSLKPISGFITGD---QARNFFFQSG-LPQPVLAQIW 72 (121)
T ss_dssp TTTSCCCHHHHHHHHHHHHHTCCBTTBEEHH---HHHHHHGGGC-CCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCeECHH---HHHHHHHHcC-CCHHHHHHHH
Confidence 4689999999999999997642 234443 4444444446 7765543 44
No 129
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=23.21 E-value=9.1 Score=30.70 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHH
Q 046813 40 INMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQ 90 (250)
Q Consensus 40 L~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Kr 90 (250)
++.-.++|.+. .|- .-...+||++. | |+..-|...|.||..=...
T Consensus 50 l~aA~~lf~e~-G~~-~~t~~~IA~~a---G-vs~~tlY~~F~sK~~L~~a 94 (236)
T 3q0w_A 50 LATAENLLEDR-PLA-DISVDDLAKGA---G-ISRPTFYFYFPSKEAVLLT 94 (236)
T ss_dssp HHHHHHHHHHS-CGG-GCCHHHHHHHH---T-CCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHc-Ccc-cCCHHHHHHHh---C-CcHHHHHHHCCCHHHHHHH
Confidence 55666778777 353 33467999999 7 9999999999998765543
No 130
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.20 E-value=19 Score=28.01 Aligned_cols=45 Identities=11% Similarity=0.190 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 39 QINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 39 QL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
=++...++|.+. .|- .-...+||++. | ++..-|...|.||-.=..
T Consensus 35 Il~aa~~l~~~~-G~~-~~ti~~IA~~a---g-vs~~t~Y~~F~sK~~Ll~ 79 (212)
T 2np3_A 35 ILTAARVCFAER-GFD-ATSLRRIAETA---G-VDQSLVHHFYGTKENLFL 79 (212)
T ss_dssp CHHHHHHHC---------------------------------CCC-CHHHH
T ss_pred HHHHHHHHHHHc-Ccc-cccHHHHHHHc---C-CCHHHHHHHhCCHHHHHH
Confidence 356677788777 364 44567999999 7 999999999999876443
No 131
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=22.65 E-value=30 Score=27.83 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHHHHHHHH
Q 046813 40 INMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQE 95 (250)
Q Consensus 40 L~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~Krkq~~~ 95 (250)
++++.-+|..|+ ||+.+ | + +|-. -|||-|||+.+++-
T Consensus 15 vRiIkiLyQSNP-yP~pe------------G--T-RqaR---RNRRRRWR~RQrQI 51 (115)
T 2x7l_M 15 VRLIKFLYQSNP-PPNPE------------G--T-RQAR---RNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHHSSC-CCCCC------------C--C-TTTH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC-CCCCC------------C--c-hhhh---HhHHHHHHHHHHHH
Confidence 456677888895 99753 3 1 1111 48999999887775
No 132
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=22.02 E-value=14 Score=28.27 Aligned_cols=45 Identities=9% Similarity=0.251 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 38 EQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 38 eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
.=++.-.++|.+. .| . -...+||++. | ++..-|...|.||-.=..
T Consensus 19 ~Il~aA~~lf~~~-G~-~-~s~~~IA~~a---g-vs~~tlY~~F~sK~~L~~ 63 (194)
T 2q24_A 19 KILAAAVRVFSEE-GL-D-AHLERIAREA---G-VGSGTLYRNFPTREALIE 63 (194)
T ss_dssp HHHHHHHHHHHHH-CT-T-CCHHHHHHHT---T-CCHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHhc-Cc-C-CCHHHHHHHh---C-CChHHHHHHcCCHHHHHH
Confidence 3456667778766 36 4 5678999999 7 999999999999865433
No 133
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=21.44 E-value=12 Score=31.54 Aligned_cols=46 Identities=13% Similarity=0.294 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 38 EQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 38 eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
.=|+...++|.+. .|-. -...+||++. | ++..-|..+|.||-.=..
T Consensus 45 ~Il~AA~~lf~e~-G~~~-~S~~~IA~~A---G-Vs~~tlY~hF~sKe~Ll~ 90 (273)
T 3c07_A 45 LILETAMRLFQER-GYDR-TTMRAIAQEA---G-VSVGNAYYYFAGKEHLIQ 90 (273)
T ss_dssp HHHHHHHHHHHHT-CSTT-CCHHHHHHHH---T-SCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHhC-Cccc-cCHHHHHHHH---C-CCHHHHHHHcCCHHHHHH
Confidence 3456677788777 3643 3457999999 7 999999999999876544
No 134
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=20.72 E-value=18 Score=27.27 Aligned_cols=47 Identities=9% Similarity=0.174 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 37 KEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 37 ~eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
..=++...++|... .|-. -...+||++. | ++..-|...|.||..=..
T Consensus 13 ~~Il~aa~~lf~~~-G~~~-~t~~~IA~~a---g-vs~~tlY~~F~sK~~L~~ 59 (197)
T 3rd3_A 13 QHLLDTGYRIMAVK-GFSG-VGLNEILQSA---G-VPKGSFYHYFKSKEQFGQ 59 (197)
T ss_dssp HHHHHHHHHHHHHH-CSTT-CCHHHHHHHH---T-CCHHHHTTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHHC-Cccc-CCHHHHHHHh---C-CChhhHHHHcCCHHHHHH
Confidence 33456677788776 3543 3356999999 7 999999999999877443
No 135
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=20.54 E-value=34 Score=25.62 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhHhcCCCCCCceeeecccchhHHH
Q 046813 38 EQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQR 89 (250)
Q Consensus 38 eQL~~LE~~F~~~~~yPs~e~R~qLA~~L~~~G~L~erqVqvWFQNRRAR~K 89 (250)
.=++.-.++|.+. .|- .-...+||++. | ++..-|...|.||..=..
T Consensus 16 ~Il~aA~~lf~~~-G~~-~~t~~~IA~~a---g-vs~~t~Y~~F~sK~~L~~ 61 (199)
T 3on2_A 16 VLLARAESTLEKD-GVD-GLSLRQLAREA---G-VSHAAPSKHFRDRQALLD 61 (199)
T ss_dssp HHHHHHHHHHHHH-CGG-GCCHHHHHHHT---C------CCCSSSSHHHHHH
T ss_pred HHHHHHHHHHHhc-Chh-hhhHHHHHHHh---C-CChHHHHHHhCCHHHHHH
Confidence 3455666777766 353 33467999999 7 999999999999876544
Done!