BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046814
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5TGY1|TMCO4_HUMAN Transmembrane and coiled-coil domain-containing protein 4 OS=Homo
sapiens GN=TMCO4 PE=2 SV=1
Length = 634
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 125/223 (56%), Gaps = 14/223 (6%)
Query: 2 LFTCSFCVSGASLTGSKMARRIRSIDEFEFKDIGQNHKQGHLAVGIMISGLVFEQEH--F 59
+ T F +GA LTG KM +R+ +I+EF F + + + L + I ++G + ++ F
Sbjct: 239 IMTSLFGAAGAGLTGYKMKKRVGAIEEFTFLPLTEGRQ---LHITIAVTGWLASGKYRTF 295
Query: 60 VQPWEGYEDYLERYALWWESDKLIALSTAIEDWLTSSTLMNLVLVKLVKLISKGAMVTVL 119
PW E+Y L WE+ L+ L A+E L S L N+V + +K TVL
Sbjct: 296 SAPWAALAHSREQYCLAWEAKYLMELGNALETIL--SGLANMVAQEALK-------YTVL 346
Query: 120 STLVSAFALPATLVTASDLIDSKRAVAVVRSDKASELLAEVLTKGLQGNRPVTLVGFPLG 179
S +V+A PA+L++ +++ID+ V + RS + + LA +L QG RPVTL+GF LG
Sbjct: 347 SGIVAALTWPASLLSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQGRRPVTLIGFSLG 406
Query: 180 APVIFKCLKCLAETGDNAGFVEMVVLLEGPISIKDEKWEDARK 222
A VI+ CL+ +A+ D G +E V+LL P+ + + WE RK
Sbjct: 407 ARVIYFCLQEMAQEKDCQGIIEDVILLGAPVEGEAKHWEPFRK 449
>sp|Q499U8|TMCO4_RAT Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus
norvegicus GN=Tmco4 PE=2 SV=1
Length = 631
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 14/223 (6%)
Query: 2 LFTCSFCVSGASLTGSKMARRIRSIDEFEFKDIGQNHKQGHLAVGIMISGLVFEQEH--F 59
+ T F +GA LTG KM +R+ +I+EF F + + KQ H+ I I+G + + F
Sbjct: 236 VMTSLFGAAGAGLTGYKMKKRVGAIEEFMFLPL-TDGKQLHIT--IAITGWLGSGRYRTF 292
Query: 60 VQPWEGYEDYLERYALWWESDKLIALSTAIEDWLTSSTLMNLVLVKLVKLISKGAMVTVL 119
PW E+Y L WE+ L+ L A+E L S L N+V + +K TVL
Sbjct: 293 NAPWMALARSQEQYCLAWEAKYLMELGNALETIL--SGLANMVAQEALK-------YTVL 343
Query: 120 STLVSAFALPATLVTASDLIDSKRAVAVVRSDKASELLAEVLTKGLQGNRPVTLVGFPLG 179
S +V+A LPA+L++ +++ID+ V + RS + + LA +L QG RPVTL+GF LG
Sbjct: 344 SGIVAALTLPASLLSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQGRRPVTLIGFSLG 403
Query: 180 APVIFKCLKCLAETGDNAGFVEMVVLLEGPISIKDEKWEDARK 222
A VI+ CL+ +A+ D G +E VVLL P+ + WE R
Sbjct: 404 ARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKYWEPFRN 446
>sp|Q91WU4|TMCO4_MOUSE Transmembrane and coiled-coil domain-containing protein 4 OS=Mus
musculus GN=Tmco4 PE=2 SV=2
Length = 631
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 122/223 (54%), Gaps = 14/223 (6%)
Query: 2 LFTCSFCVSGASLTGSKMARRIRSIDEFEFKDIGQNHKQGHLAVGIMISGLVFEQEH--F 59
+ T F +GA LTG KM +R+ +I+EF F + + + L + I I+G + + F
Sbjct: 236 VMTSLFGAAGAGLTGYKMKKRVGAIEEFMFLPLTEGRQ---LHITIAITGWLGSGRYRTF 292
Query: 60 VQPWEGYEDYLERYALWWESDKLIALSTAIEDWLTSSTLMNLVLVKLVKLISKGAMVTVL 119
PW E+Y L WE+ L+ L A+E L S L N+V + +K TVL
Sbjct: 293 NAPWMALARSQEQYCLAWEAKYLMELGNALETIL--SGLANMVAQEALK-------YTVL 343
Query: 120 STLVSAFALPATLVTASDLIDSKRAVAVVRSDKASELLAEVLTKGLQGNRPVTLVGFPLG 179
S +V+A PA+L++ +++ID+ V + RS + + LA +L QG RPVTL+GF LG
Sbjct: 344 SGIVAALTWPASLLSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQGRRPVTLIGFSLG 403
Query: 180 APVIFKCLKCLAETGDNAGFVEMVVLLEGPISIKDEKWEDARK 222
A VI+ CL+ +A+ D G +E VVLL P+ + WE R
Sbjct: 404 ARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKHWEPFRN 446
>sp|Q20035|TMCO4_CAEEL Uncharacterized membrane protein F35D11.3 OS=Caenorhabditis elegans
GN=F35D11.3 PE=3 SV=2
Length = 617
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 114/213 (53%), Gaps = 16/213 (7%)
Query: 9 VSGASLTGSKMARRIRSIDEFEFKDIGQNHKQGHLAVGIMISGLV----FEQEHFVQPWE 64
V+GA TG KM +R+ +I+EF + + + L+ +++SG + + FV W
Sbjct: 274 VAGAGFTGYKMKKRVGAIEEFSVETLSEGVS---LSCSLVVSGWIESDTSPDQAFVHQWR 330
Query: 65 GYEDYLERYALWWESDKLIALSTAIEDWLTSSTLMNLVLVKLVKLISKGAMVTVLSTLVS 124
E+Y L +ES+ L+ L AIE L+ + I + + T L+ LVS
Sbjct: 331 HLRHTKEQYTLRYESNYLMELGNAIE---------YLMSFAVSVAIQQTLLETALAGLVS 381
Query: 125 AFALPATLVTASDLIDSKRAVAVVRSDKASELLAEVLTKGLQGNRPVTLVGFPLGAPVIF 184
A A P L++ S ++D+ V V R+ + E LAEVL G RP+TL+GF LGA VIF
Sbjct: 382 AVAWPVALMSVSSVLDNPWNVCVSRAAEVGEQLAEVLLSRSHGKRPITLIGFSLGARVIF 441
Query: 185 KCLKCLAETGDNAGFVEMVVLLEGPISIKDEKW 217
CL +++ ++ G +E V+LL P++ ++W
Sbjct: 442 HCLLTMSKRSESVGIIEDVILLGAPVTASPKEW 474
>sp|O14244|YELD_SCHPO Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6F6.13c PE=3 SV=1
Length = 778
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 17/219 (7%)
Query: 2 LFTCSFCVSGASLTGSKMARRIRSIDEFEFKDIGQNHKQGHLAVGIMISGLVFEQEHFVQ 61
L T +SGA + + MA R + FEF+ + H Q V + +SG + +E V+
Sbjct: 411 LITAGGAISGAHIGTTGMAHRKADVKTFEFRPL---HAQRRANVIVTVSGWMLSKEDDVR 467
Query: 62 PWEGYEDYL--ERYALWWESDKLIALSTAIEDWLTSSTLMNLVLVKLV-KLISKGAMVTV 118
D + + Y+++WE + L ++ MN++ ++V + + + TV
Sbjct: 468 LSFATLDPIVGDIYSVFWEPEMLA----------SAGQTMNILATEVVTQSLQQVLGSTV 517
Query: 119 LSTLVSAFALPATLVTASDLIDSKRAVAVVRSDKASELLAEVLTKGLQGNRPVTLVGFPL 178
L +L+ A P L LID+ ++ R+ +LLA++L G RPVTLVG+ L
Sbjct: 518 LVSLMGALQWPLILTKLGYLIDNPWNNSLDRAKATGQLLADMLCYRSLGVRPVTLVGYSL 577
Query: 179 GAPVIFKCLKCLAETGDNAGFVEMVVLLEGPISIKDEKW 217
GA VI+ CL+ L E +E V L P+ K W
Sbjct: 578 GARVIYYCLREL-EKKKEFSIIENVYLFGTPVIFKRTSW 615
>sp|Q9US10|YK68_SCHPO Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC607.08c PE=3 SV=1
Length = 579
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 19/226 (8%)
Query: 2 LFTCSFCVSGASLTGSKMARRIRSIDEFEFKDIGQNHKQGHLAVGIMISGLVFEQEHFVQ 61
+ T F GA ++ +M + + +FEF + Q HL V I ISG + +
Sbjct: 228 MITALFGGFGAKMSMQQMGDVSKGLTDFEFIPL---SVQSHLPVTIGISGWLGDYNEVDA 284
Query: 62 PWE----GYEDYL--ERYALWWESDKLIALSTAIEDWLTSSTLMNLVLVKLVKLISKGAM 115
W+ G + Y + YAL +E + L+ L ++ L S+ L VK ++IS+
Sbjct: 285 AWKSLTVGDKSYYWGDIYALKFEVEALVDLGKSLSRILFSA---GLGWVK-GEVISR--- 337
Query: 116 VTVLSTLVSAFALPATLVTASDLIDSKRAVAVVRSDKASELLAEVLTKGLQGNRPVTLVG 175
T+L+ L +A P +L+ +++ + +A S KA E LA L QG RPVTL+G
Sbjct: 338 -TILAPLAAAL-WPLSLLKVGNILGNSWRIAFNLSIKAGEALANALCVRAQGMRPVTLIG 395
Query: 176 FPLGAPVIFKCLKCLAETGDNAGFVEMVVLLEGPISIKDEKWEDAR 221
F LGA I +CL LA+ G+ VE V+++ P+ + W R
Sbjct: 396 FSLGARTILECLLHLADRGET-NLVENVIVMGAPMPTDAKLWLKMR 440
>sp|P43564|YFD4_YEAST Uncharacterized membrane protein YFL034W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YFL034W PE=1
SV=2
Length = 1073
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 110/218 (50%), Gaps = 25/218 (11%)
Query: 11 GASLTGSKMARRIRSIDEFEFKDIGQNHKQGHLAVGIMISGLVFEQEHFVQ-------PW 63
GA++ M++R+ S+ FEF+ + N + + + + +SG + E V+ P
Sbjct: 603 GANIGARGMSKRMGSVRTFEFRPLHNNRR---VNLILTVSGWMVGNEDDVRLPFSTVDPV 659
Query: 64 EGYEDYLERYALWWESDKLIALSTAIEDWLTSSTLMNLVLVKLVKLISKGAMVTVLSTLV 123
EG + Y+L+WE + L ++ + + ++ + L +++ GA TVL+ L+
Sbjct: 660 EG-----DLYSLYWEPEMLKSIGQTVS--IVATEIFTTSLQQIL-----GA--TVLTALI 705
Query: 124 SAFALPATLVTASDLIDSKRAVAVVRSDKASELLAEVLTKGLQGNRPVTLVGFPLGAPVI 183
S+ P L ++D+ V++ R+ A ++LA+ L G RP+TLVGF +GA VI
Sbjct: 706 SSIQWPMALSKLGYILDNPWNVSLDRAWSAGKILADTLIARNLGARPITLVGFSIGARVI 765
Query: 184 FKCLKCLAETGDNAGFVEMVVLLEGPISIKDEKWEDAR 221
F CL L + G +E V L P +K E+ AR
Sbjct: 766 FSCLIELCKK-KALGLIENVYLFGTPAVMKKEQLVMAR 802
>sp|P51042|CISY_RICCN Citrate synthase OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=gltA PE=3 SV=3
Length = 435
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 145 VAVVRSDKASELLAEVLTKGLQGNRPVTLVGF---------PLGAPVIFKCLKCLAETG- 194
+ +++ +SE + + + K N P L+GF P A + C + L E G
Sbjct: 278 INMIKEIGSSEYIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKETCKEVLKELGQ 337
Query: 195 -DNAGFVEMVVLLEGPISIKDEKW 217
DN F+++ + LE I++KDE +
Sbjct: 338 LDNNPFLQIAIELEA-IALKDEYF 360
>sp|P60346|TRUB_NANEQ Probable tRNA pseudouridine synthase B OS=Nanoarchaeum equitans
(strain Kin4-M) GN=truB PE=3 SV=1
Length = 348
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Query: 21 RRIRSIDEFEFKDIGQNHKQGHLAVGIMISGLVFEQEHFVQPWEGYEDYLERYALWWES- 79
RRI+S G H+ + + ++ L F +E EG E+Y+ + L E
Sbjct: 212 RRIKS---------GPFHENNSVYLQDIVDSLYFWKE------EGNEEYIRKVFLPVEEA 256
Query: 80 ----DKLIALSTAIEDWLTSSTLMNLVLVKLVKLISKGAMVTVLSTLVSAFALPATLVTA 135
K+ L +A+ + + L + KL I KG +V++ + A+ L+ +
Sbjct: 257 VKHLKKIYILDSAVAAIVHGANLAVPGIAKLYSNIKKGDLVSIHTLKGELVAIGIALMDS 316
Query: 136 SDLIDSKRAVAV 147
++++ KR +AV
Sbjct: 317 KEMLEKKRGIAV 328
>sp|B8DBU4|LEU1_LISMH 2-isopropylmalate synthase OS=Listeria monocytogenes serotype 4a
(strain HCC23) GN=leuA PE=3 SV=1
Length = 512
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 171 VTLVGFPLGAPVIFKCLKCLAETGDNAGFVEMVVLLEGPISIKDEKWEDA 220
V GFP+ +P F+C+K +A+ + + +EG I +E +DA
Sbjct: 41 VIEAGFPISSPGDFECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALKDA 90
>sp|Q71Y35|LEU1_LISMF 2-isopropylmalate synthase OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=leuA PE=1 SV=1
Length = 512
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 171 VTLVGFPLGAPVIFKCLKCLAETGDNAGFVEMVVLLEGPISIKDEKWEDA 220
V GFP+ +P F+C+K +A+ + + +EG I +E +DA
Sbjct: 41 VIEAGFPISSPGDFECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALKDA 90
>sp|C1KWT1|LEU1_LISMC 2-isopropylmalate synthase OS=Listeria monocytogenes serotype 4b
(strain CLIP80459) GN=leuA PE=3 SV=1
Length = 512
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 171 VTLVGFPLGAPVIFKCLKCLAETGDNAGFVEMVVLLEGPISIKDEKWEDA 220
V GFP+ +P F+C+K +A+ + + +EG I +E +DA
Sbjct: 41 VIEAGFPISSPGDFECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALKDA 90
>sp|Q8Y5R9|LEU1_LISMO 2-isopropylmalate synthase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=leuA PE=3 SV=1
Length = 512
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 171 VTLVGFPLGAPVIFKCLKCLAETGDNAGFVEMVVLLEGPISIKDEKWEDA 220
V GFP+ +P F+C+K +A+ + + +EG I +E +DA
Sbjct: 41 VIEAGFPISSPGDFECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALKDA 90
>sp|Q9GM70|ST17A_RABIT Serine/threonine-protein kinase 17A OS=Oryctolagus cuniculus
GN=STK17A PE=2 SV=1
Length = 397
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/143 (18%), Positives = 60/143 (41%), Gaps = 7/143 (4%)
Query: 34 IGQNHKQGHLAVGIMISGLVFEQEHFVQPWEGYEDYLERYALWWESDKLIALSTAIEDWL 93
+G N ++ L + M L + +E F E D++++ + D+ A WL
Sbjct: 247 LGDNKQETFLNISQM--NLSYSEEEFDTVSESAVDFIKKLLVKKPEDRATAEECLKHPWL 304
Query: 94 TSSTLMNLVL-----VKLVKLISKGAMVTVLSTLVSAFALPATLVTASDLIDSKRAVAVV 148
T S++ + VL ++ + KG V +S+ ++VT ++ + +
Sbjct: 305 TQSSIQDPVLRVKEALEEANALQKGDSVPEISSATEKPGTEESIVTEELIVVTSYTLGQC 364
Query: 149 RSDKASELLAEVLTKGLQGNRPV 171
R + ++ + ++K + P+
Sbjct: 365 RQSEKEKMEQKAISKRFKFEEPL 387
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,622,153
Number of Sequences: 539616
Number of extensions: 2954407
Number of successful extensions: 7259
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 7227
Number of HSP's gapped (non-prelim): 34
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)