BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046815
         (463 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
 pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
 pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
 pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
           Reduced State And Definition Of A Minimal Core Interface
           For Electron Transfer.
 pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
           Reduced State And Definition Of A Minimal Core Interface
           For Electron Transfer.
 pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
           Bound And Definition Of A Minimal Core Interface For
           Electron Transfer.
 pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
           Bound And Definition Of A Minimal Core Interface For
           Electron Transfer
          Length = 431

 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 28/113 (24%)

Query: 207 FRYCTNDAHFDIPFPDWSFWGWSEV-------------NLQPWNEEFKDIKHG--SQAKS 251
           ++ C N  HF + + D   WG+S                L+ WN     +      +AKS
Sbjct: 283 YQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKS 342

Query: 252 -WKEKLPFAYWKGNPDVLSPLRVELMKCNDSKLWGAEILRQNWAEEAKDGFKK 303
             K +L   Y  GNP             ND+ L GAE+L +       + FKK
Sbjct: 343 LLKLQLGQLYESGNP------------VNDANLLGAEVLIKGSKLSLGEAFKK 383


>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
           Crystallized With An Antibody Fv-Fragment
 pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
           Cytochrome C
 pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
           Cytochrome C
          Length = 430

 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 28/113 (24%)

Query: 207 FRYCTNDAHFDIPFPDWSFWGWSEV-------------NLQPWNEEFKDIKHG--SQAKS 251
           ++ C N  HF + + D   WG+S                L+ WN     +      +AKS
Sbjct: 282 YQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKS 341

Query: 252 -WKEKLPFAYWKGNPDVLSPLRVELMKCNDSKLWGAEILRQNWAEEAKDGFKK 303
             K +L   Y  GNP             ND+ L GAE+L +       + FKK
Sbjct: 342 LLKLQLGQLYESGNP------------VNDANLLGAEVLIKGSKLSLGEAFKK 382


>pdb|4A2N|B Chain B, Crystal Structure Of Ma-Icmt
          Length = 194

 Score = 29.3 bits (64), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 289 LRQNWAE--EAKDGFKKSKLSNQCNHRYKIYAEGYAWSVSLKYILSCNSVALI 339
           L  NW+   E KDG K  K     N R+ +YA  + W ++   ILS N V LI
Sbjct: 99  LGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILS-NWVVLI 150


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,600,801
Number of Sequences: 62578
Number of extensions: 615050
Number of successful extensions: 1172
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1169
Number of HSP's gapped (non-prelim): 4
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)