Query 046815
Match_columns 463
No_of_seqs 219 out of 835
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2458 Endoplasmic reticulum 100.0 6E-111 1E-115 856.1 29.4 455 2-463 21-493 (528)
2 PF05686 Glyco_transf_90: Glyc 100.0 2E-101 3E-106 802.8 31.5 361 102-463 1-368 (395)
3 smart00672 CAP10 Putative lipo 100.0 2.2E-66 4.8E-71 510.7 19.4 241 178-421 1-256 (256)
4 PF13524 Glyco_trans_1_2: Glyc 97.8 0.0001 2.2E-09 60.7 7.8 81 321-407 9-90 (92)
5 PF03016 Exostosin: Exostosin 78.7 7.8 0.00017 38.3 7.8 141 214-374 151-299 (302)
6 PRK15427 colanic acid biosynth 75.4 15 0.00032 38.6 9.1 86 323-412 317-404 (406)
7 PRK10307 putative glycosyl tra 74.7 12 0.00027 38.7 8.3 84 323-413 320-407 (412)
8 cd03801 GT1_YqgM_like This fam 74.5 16 0.00034 35.1 8.5 84 322-409 287-371 (374)
9 COG4641 Uncharacterized protei 73.4 13 0.00028 39.1 7.7 82 309-396 255-343 (373)
10 cd04962 GT1_like_5 This family 68.5 30 0.00065 34.6 9.2 85 324-412 284-369 (371)
11 cd05844 GT1_like_7 Glycosyltra 65.7 22 0.00048 35.5 7.6 81 323-407 283-364 (367)
12 TIGR03087 stp1 sugar transfera 63.7 35 0.00076 35.2 8.8 82 322-411 310-394 (397)
13 cd03822 GT1_ecORF704_like This 63.5 36 0.00077 33.4 8.5 78 322-404 281-358 (366)
14 cd03808 GT1_cap1E_like This fa 63.1 38 0.00083 32.6 8.5 80 322-405 275-355 (359)
15 cd03818 GT1_ExpC_like This fam 63.1 40 0.00087 34.8 9.1 75 325-403 315-390 (396)
16 TIGR03088 stp2 sugar transfera 62.9 43 0.00094 33.9 9.2 84 323-411 285-370 (374)
17 cd03794 GT1_wbuB_like This fam 61.0 34 0.00074 33.4 7.8 79 323-405 312-391 (394)
18 PF00534 Glycos_transf_1: Glyc 59.3 23 0.0005 31.5 5.8 69 322-394 104-172 (172)
19 TIGR02472 sucr_P_syn_N sucrose 58.4 26 0.00057 37.0 6.9 82 325-411 355-438 (439)
20 PF01788 PsbJ: PsbJ; InterPro 58.4 14 0.00029 26.4 3.1 30 7-37 4-33 (40)
21 cd03825 GT1_wcfI_like This fam 57.8 67 0.0015 31.7 9.4 78 323-405 277-356 (365)
22 TIGR02149 glgA_Coryne glycogen 56.4 45 0.00097 33.8 8.0 77 327-406 297-379 (388)
23 cd03795 GT1_like_4 This family 54.5 40 0.00088 33.2 7.2 77 323-403 278-356 (357)
24 cd03817 GT1_UGDG_like This fam 54.5 58 0.0013 31.7 8.2 82 312-398 279-362 (374)
25 cd03807 GT1_WbnK_like This fam 54.2 73 0.0016 30.8 8.8 79 322-407 280-360 (365)
26 PRK15484 lipopolysaccharide 1, 54.1 59 0.0013 33.6 8.5 85 326-415 293-379 (380)
27 cd03799 GT1_amsK_like This is 53.9 45 0.00097 32.8 7.3 78 322-403 273-351 (355)
28 TIGR03449 mycothiol_MshA UDP-N 47.8 1.3E+02 0.0027 30.9 9.8 81 323-407 315-395 (405)
29 PF01307 Plant_vir_prot: Plant 47.6 37 0.00081 29.3 4.8 36 16-64 12-47 (104)
30 KOG2619 Fucosyltransferase [Ca 47.3 1E+02 0.0022 32.6 8.8 179 178-377 129-313 (372)
31 cd04955 GT1_like_6 This family 45.2 61 0.0013 32.0 6.8 79 323-409 281-360 (363)
32 cd03820 GT1_amsD_like This fam 44.1 1.3E+02 0.0028 28.7 8.7 79 322-404 264-343 (348)
33 PRK05749 3-deoxy-D-manno-octul 43.1 33 0.00071 35.9 4.6 67 326-396 336-404 (425)
34 cd03792 GT1_Trehalose_phosphor 42.2 1.2E+02 0.0026 30.8 8.5 81 325-411 288-369 (372)
35 cd03823 GT1_ExpE7_like This fa 40.2 1E+02 0.0023 29.8 7.5 70 322-396 275-345 (359)
36 cd03814 GT1_like_2 This family 38.5 1.6E+02 0.0036 28.5 8.6 78 322-403 278-355 (364)
37 cd03805 GT1_ALG2_like This fam 37.9 90 0.002 31.6 6.8 73 327-404 316-389 (392)
38 cd03813 GT1_like_3 This family 37.1 1.5E+02 0.0032 31.8 8.6 81 323-405 383-468 (475)
39 cd03798 GT1_wlbH_like This fam 36.0 1.4E+02 0.0031 28.6 7.7 85 322-412 290-375 (377)
40 cd03816 GT1_ALG1_like This fam 33.8 84 0.0018 33.0 5.9 76 320-401 327-406 (415)
41 cd03809 GT1_mtfB_like This fam 33.1 1.3E+02 0.0027 29.4 6.8 75 323-403 285-359 (365)
42 cd03800 GT1_Sucrose_synthase T 32.8 1.2E+02 0.0026 30.4 6.8 76 326-405 318-394 (398)
43 cd03819 GT1_WavL_like This fam 32.4 1.1E+02 0.0024 30.1 6.4 75 322-401 276-353 (355)
44 PRK02565 photosystem II reacti 32.4 20 0.00042 25.4 0.6 29 7-36 3-31 (39)
45 cd03821 GT1_Bme6_like This fam 31.7 2.2E+02 0.0047 27.5 8.2 76 322-404 293-370 (375)
46 PF10717 ODV-E18: Occlusion-de 31.5 85 0.0018 26.1 4.2 34 9-52 20-54 (85)
47 cd07353 harmonin_N N-terminal 29.2 1E+02 0.0022 24.8 4.2 35 385-419 2-37 (79)
48 cd04946 GT1_AmsK_like This fam 27.6 2E+02 0.0043 30.1 7.4 78 323-404 323-402 (407)
49 cd04949 GT1_gtfA_like This fam 26.6 2.5E+02 0.0054 28.2 7.8 79 322-403 290-368 (372)
50 PLN02871 UDP-sulfoquinovose:DA 25.0 5.4E+02 0.012 27.3 10.3 89 325-417 346-442 (465)
51 TIGR02918 accessory Sec system 23.1 1.6E+02 0.0036 32.1 6.0 88 323-413 405-499 (500)
52 PF05456 eIF_4EBP: Eukaryotic 21.7 35 0.00076 30.1 0.4 20 444-463 51-71 (116)
No 1
>KOG2458 consensus Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif [General function prediction only]
Probab=100.00 E-value=5.6e-111 Score=856.11 Aligned_cols=455 Identities=42% Similarity=0.797 Sum_probs=402.3
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHHHHHHhhh----cccccccccccccCCCCC-CCCCccCCCCCCCcccccccccee
Q 046815 2 VFPSRTPARSPSYLFPCVISLSVISLAALFLDY----KVDDFASKTKTLAGHNLE-PTPWHLFPQRTFKEESRRSQAYKI 76 (463)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~ 76 (463)
+.|..+++++++++..+|+..+++ +.| .. .+|.+.-.++...+..+. |+.++.+|... .-.+.+.++.-.
T Consensus 21 ~~~~~s~~~s~~~~~~~v~~~~~~---~~l-~~af~s~~d~s~~~~~~~~~~~~~~~~t~~~~P~~~-~~~~~s~~~~~~ 95 (528)
T KOG2458|consen 21 GEPLVSSPKSLSWGPGLVVLSARY---FYL-QGVFSSKLDFSPAGEKKFKVKVSRTPTTRIPVPKPL-DRKDGSFLRRYR 95 (528)
T ss_pred ccccccccccccccchHHHHHHHH---HHH-HhcccceecchhhcccceEEEeccCCcccccCCccc-ccccCCcchhhh
Confidence 346788888888766663222222 222 23 678777666666777777 68888999843 333444444556
Q ss_pred eecccc-------ccCCCCCCCCCCC-CCCCCCCCCCCCCchhhHHhhhhhhhcCCCCHHHHHHHhhcCcEEEEEECCEE
Q 046815 77 VHCTYL-------TCLSAMNPIPERR-RVASPQKVQTCPDFFKSIHKDLEPWAKSRITMRHIMEAKRFAALRILIVRGKL 148 (463)
Q Consensus 77 ~~c~~~-------~c~~~~~~~~~~~-~~~~~~~~~~Cp~~f~~I~~Dl~pw~~~gIt~~~l~~a~~~~~~rv~I~~G~l 148 (463)
++||.. +|+.+..+..+.. ..+......+|||+|+||++||.||+++|||+++++++++.+++|++|++|++
T Consensus 96 l~cs~~s~~~~~~~~p~~~~~~s~~~~~~~~~~~~~tCPDyfrWIheDL~Pw~etgItre~~erak~~a~fr~vI~~g~~ 175 (528)
T KOG2458|consen 96 LYCSLFSGLKREVLCPSSHVSKSPYILKNPVYHESCTCPDYFRWIHEDLCPWRETGITREMAERAKRKAHFRLVIKEGRL 175 (528)
T ss_pred hhhhhhhcccccccccccccccCccccCCCCCCCCCCCCcHHHHHHHhcCccccccchHHHhhhhhcccceeeeeecCce
Confidence 899644 4543321111110 11123566799999999999999999999999999999999999999999999
Q ss_pred EEeccccccccchhhHHHHHHHHHHhcCCCCCCeEEEecCCCcccccccCCC--CCCcCeeEeccCCCCCCcccCCCCCc
Q 046815 149 YVDPYYDCVQSRAMFTIWGFLQLLRRYPGMVPDVDIMFDCMDKPVIDKKEHG--SFPLPLFRYCTNDAHFDIPFPDWSFW 226 (463)
Q Consensus 149 yv~~~~~~~~sR~~~~l~~ll~ll~~~~~~LPDvef~~n~~D~P~~~~~~~~--~~~~Plfs~~k~~~~~DIl~Pd~~fw 226 (463)
||+.|.+++|+|++|++|+++||+++|||.|||+||+|||+|+|.+.+.+.+ .+++|||+||++.++.||+||||+||
T Consensus 176 yv~~Y~ks~qtrd~ft~wgilqLlr~ypgklPDlElmf~~~D~P~v~~~~~~~~~~ppPlF~yCg~~~s~DIVfPdwsfw 255 (528)
T KOG2458|consen 176 YVENYRKSIQTRDVFTIWGILQLLRTYPGKLPDLELMFNCGDWPLVRKKDFQGTPPPPPLFSYCGSSESLDIVFPDWSFW 255 (528)
T ss_pred ehhhhhhhhcccchHHHHHHHHHHHhcCCCCCCceeeeecCCccccchhhccCCCCCCCeEeecCCcccccccccCcccc
Confidence 9999999999999999999999999999999999999999999999887764 38999999999999999999999999
Q ss_pred CCcccccccchHHHHHhhcCCCCCCcccccCeEEEeecCCCCChhHHHHHHccCCC--cccceeccccchhhhhcCCCCC
Q 046815 227 GWSEVNLQPWNEEFKDIKHGSQAKSWKEKLPFAYWKGNPDVLSPLRVELMKCNDSK--LWGAEILRQNWAEEAKDGFKKS 304 (463)
Q Consensus 227 gwpe~~i~~w~~~~~~i~~~~~~~pW~~K~pkafWRG~~t~~~~~R~~Lv~~~~~~--~~da~i~~~~w~~e~~~g~~~~ 304 (463)
||+|.||++|+.+...+.+++.+.+|.+|.++|||||++++..+.|+.||+|++++ +|+++++.|+|.+|.+.||+.+
T Consensus 256 gw~e~nik~w~~~~~~~~egn~~~~W~~r~~yAywrGnp~v~e~~rl~ll~cn~s~~~d~~~~~y~qdw~~E~~~G~k~s 335 (528)
T KOG2458|consen 256 GWAEVNIKPWEKLLEDIVEGNKRPKWKNKNPYAYWRGNPSVAERLRLDLLSCNNSELVDANATLYFQDWSKESKLGFKQS 335 (528)
T ss_pred CChhhcccccchHHHHHHhhccCCCcccCCceeEecCCCCccccchhhhhhcCCchhhchhhhhHHHhhhhhhhcccccc
Confidence 99999999999999999999999999999999999999999779999999999998 6777777899999999999999
Q ss_pred ChhhhccccEEEeecCceeccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHH
Q 046815 305 KLSNQCNHRYKIYAEGYAWSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEA 384 (463)
Q Consensus 305 ~l~d~~~YKYll~vdG~s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A 384 (463)
.++|||+|||.|+|||.+||+|+||||+|+||+|++++.|+|||+++|.||+|||||+.+ |+||+++|+|+++|+++|
T Consensus 336 ~l~dqc~hrYkIyiEG~awsvs~kYilacDS~tL~v~p~YydfF~r~l~P~~HYwPIk~~--c~slkfaV~Wgn~h~~~A 413 (528)
T KOG2458|consen 336 NLFDQCKHRYKIYIEGTAWSVSEKYILACDSMTLKVKPEYYDFFYRGLQPWKHYWPIKSN--CRSLKFAVDWGNNHDEEA 413 (528)
T ss_pred chhhhcceeeEEEEeeeeeeeecceeeecceeEEeecchHHHHHhhcccchhcccccccc--hhHHHHHHHhcccChHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccccCCChhHHHHHHHHhcCCCCCCCCCC
Q 046815 385 EKIGKAGQDFME-SLTMDRVYDYMLHLITEYSKLLDYKPAPPSSAFEACVESLLCLADPKQRQNLEKAAASPSPYPPCTL 463 (463)
Q Consensus 385 ~~IA~~g~~fa~-~L~~~~~~~Y~~~LL~eYa~l~~~~P~~~~~a~e~c~e~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (463)
|.||++|++|++ .|.|+++||||++||+|||+||+|+|++|++|+|||+|+|+|+++|++|+||++|++.||++.||.|
T Consensus 414 q~Igk~gs~f~r~~L~m~~vYdYmfhllqeYakL~k~kpevp~~a~evc~~~m~cp~~g~~r~~m~~slv~ps~~~pC~~ 493 (528)
T KOG2458|consen 414 QKIGKEGSEFARKNLKMDYVYDYMFHLLQEYAKLQKFKPEVPEGATEVCPETMACPEDGRERKFMDESLVMPSDTAPCEM 493 (528)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhhcCCcCCCCccccCchhccCCccchhhhhhhhccccccccCcccC
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999988999999987
No 2
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=100.00 E-value=1.6e-101 Score=802.83 Aligned_cols=361 Identities=45% Similarity=0.905 Sum_probs=343.8
Q ss_pred CCCCCCCchhhHHhhhhhhhcCCCCHHHHHHHhhcCcEEEEEECCEEEEeccccccccchhhHHHHHHHHHHhcCCCCCC
Q 046815 102 KVQTCPDFFKSIHKDLEPWAKSRITMRHIMEAKRFAALRILIVRGKLYVDPYYDCVQSRAMFTIWGFLQLLRRYPGMVPD 181 (463)
Q Consensus 102 ~~~~Cp~~f~~I~~Dl~pw~~~gIt~~~l~~a~~~~~~rv~I~~G~lyv~~~~~~~~sR~~~~l~~ll~ll~~~~~~LPD 181 (463)
++.+||++|++|++||+||++.|||+++++++++.+++|++|+||||||+.+++++++|++|++++|+++++++|++|||
T Consensus 1 ~~~~cp~~f~~I~~dl~~w~~~gIt~~~l~~~~~~~~~r~~I~~g~lYv~~~~~~~~tR~~~t~~~l~~ll~~~p~~lPD 80 (395)
T PF05686_consen 1 SNSQCPDYFRQIHRDLAPWRETGITREMLDRARRRAMFRYVIKDGRLYVESYREMFQTRDMFTLWGLLQLLRRYPGRLPD 80 (395)
T ss_pred CCCCCCccHHHHHHHHHHhhcCCCCHHHHHHHHhcCceEEEEECCEEEEEecccccchhHHHHHHHHHHHHHhCcCCCCC
Confidence 35799999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccccccCCC---CCCcCeeEeccCCCCCCcccCCCCCcCCcccccccchHHHHHhhcCCCCCCcccccCe
Q 046815 182 VDIMFDCMDKPVIDKKEHG---SFPLPLFRYCTNDAHFDIPFPDWSFWGWSEVNLQPWNEEFKDIKHGSQAKSWKEKLPF 258 (463)
Q Consensus 182 vef~~n~~D~P~~~~~~~~---~~~~Plfs~~k~~~~~DIl~Pd~~fwgwpe~~i~~w~~~~~~i~~~~~~~pW~~K~pk 258 (463)
|||+||++|+|.+.+..+. .+++|||++||+.++.|||||||+|||||+.+|++|+..+..+.+++..+||++|+++
T Consensus 81 ~Ef~~n~~D~P~~~~~~~~~~~~~~~Pifs~~~~~~~~DIl~Pd~~fwgw~e~~i~~w~~~~~~i~~~~~~~pW~~K~p~ 160 (395)
T PF05686_consen 81 VEFMFNCDDWPVVRKDDYQGPSAPPPPIFSYCKSSDTADILFPDFSFWGWPEINIGPWDEDRKDIKEGNERVPWEDKKPK 160 (395)
T ss_pred eeEEeECCCCccccccccCCCCcchhhheeeccccCcCccccCCccccccccccCCchHHHhhhhhccccCCChhhcccc
Confidence 9999999999998776532 3689999999999999999999999999999999999999999889999999999999
Q ss_pred EEEeecCCCCChhHHHHHHccCC--CcccceeccccchhhhhcCCCCCChhhhccccEEEeecCceeccchHHHHcCCce
Q 046815 259 AYWKGNPDVLSPLRVELMKCNDS--KLWGAEILRQNWAEEAKDGFKKSKLSNQCNHRYKIYAEGYAWSVSLKYILSCNSV 336 (463)
Q Consensus 259 afWRG~~t~~~~~R~~Lv~~~~~--~~~da~i~~~~w~~e~~~g~~~~~l~d~~~YKYll~vdG~s~S~Rlk~lL~~~Sv 336 (463)
|||||+++++ ..|.+|++++++ +.|+|+++.++|..+...+++.+++++||+|||+||+||++||+||||||+||||
T Consensus 161 afWRG~~~~~-~~R~~L~~~~~~~~~~~~a~i~~~d~~~~~~~~~~~~~l~~~~~yKYli~idG~~~S~RlkylL~c~Sv 239 (395)
T PF05686_consen 161 AFWRGSPTVA-ETRQRLVRCSRSHPDLWDARITKQDWDKEYKPGFKHVPLEDQCKYKYLIYIDGNAWSGRLKYLLACNSV 239 (395)
T ss_pred eEECCCcCCC-cchhHHHHHhccCCccceeeechhhhhhhccccccccCHHHHhhhheeecCCCceeehhHHHHHcCCce
Confidence 9999999974 479999988754 6789999999998777778888999999999999999999999999999999999
Q ss_pred EEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHH
Q 046815 337 ALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTMDRVYDYMLHLITEYS 415 (463)
Q Consensus 337 Vlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~~~~~~Y~~~LL~eYa 415 (463)
||++++.|+|||+++|+||+|||||+.++.++||+++|+|+++||++||+||+||++|++ +|++++++|||++||+||+
T Consensus 240 Vl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~L~~~~~~~Y~~~LL~eYa 319 (395)
T PF05686_consen 240 VLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRFAREYLTMEDVYCYWRRLLLEYA 319 (395)
T ss_pred EEEeCCcHHHHHHhhhcccccEEEeccccchhhHHHHhhhcccChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999444999999999999999999999999999999 9999999999999999999
Q ss_pred hhcCCCCCCCCCcccccccccccCCChhHHHHHHHHhc-CCCCCCCCCC
Q 046815 416 KLLDYKPAPPSSAFEACVESLLCLADPKQRQNLEKAAA-SPSPYPPCTL 463 (463)
Q Consensus 416 ~l~~~~P~~~~~a~e~c~e~~~c~~~~~~~~~~~~~~~-~~~~~~~~~~ 463 (463)
+|++|+|+++++++|||.|+|+|.++|.+|+||++|++ +|++++||+|
T Consensus 320 ~l~~~~p~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (395)
T PF05686_consen 320 KLLRFKPTVPPGAEEVCPESMACPAEGRERKFMMESMVKSPSDTDPCTM 368 (395)
T ss_pred HHhCCCCcCCCCceEechhhcCCCcccchhhHHHHhhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999997 9999999997
No 3
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=100.00 E-value=2.2e-66 Score=510.72 Aligned_cols=241 Identities=51% Similarity=1.043 Sum_probs=221.7
Q ss_pred CCCCeEEEecCCCcccccccCCC----CCCcCeeEeccCCCCCCcccCCCCCc-CCcccccccchHHHHHhhcCCCCCCc
Q 046815 178 MVPDVDIMFDCMDKPVIDKKEHG----SFPLPLFRYCTNDAHFDIPFPDWSFW-GWSEVNLQPWNEEFKDIKHGSQAKSW 252 (463)
Q Consensus 178 ~LPDvef~~n~~D~P~~~~~~~~----~~~~Plfs~~k~~~~~DIl~Pd~~fw-gwpe~~i~~w~~~~~~i~~~~~~~pW 252 (463)
+|||+||+||++|+|.+.+.++. ..++||||+||..++.|||||||+|| |||+.++++|+..+.++++++.++||
T Consensus 1 ~lPD~ef~~n~~D~p~~~~~~~~~~~~~~~~Pifs~~k~~~~~DIl~P~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~pW 80 (256)
T smart00672 1 RVPDLELMFNCRDWPLINKKSFASYNQHAPPPLFSYCGSDEYLDIVFPDWSFWAGWPEVNGRPWDKDLMELEEGNKRTKW 80 (256)
T ss_pred CCCCeeeeeeCCCccccccCCCCCcccCCCCCeEEecCCCCCCceEecCHHHhCCCccccCcchHHHHHHHHhhhcCCCc
Confidence 48999999999999998765432 34799999999999999999999999 99999999999999999988889999
Q ss_pred ccccCeEEEeecCCCCChhHHHHHHccCCC--cccceeccccch-----hhhhcCCCCCChhhhccccEEEeecCceecc
Q 046815 253 KEKLPFAYWKGNPDVLSPLRVELMKCNDSK--LWGAEILRQNWA-----EEAKDGFKKSKLSNQCNHRYKIYAEGYAWSV 325 (463)
Q Consensus 253 ~~K~pkafWRG~~t~~~~~R~~Lv~~~~~~--~~da~i~~~~w~-----~e~~~g~~~~~l~d~~~YKYll~vdG~s~S~ 325 (463)
++|+++|||||+++++ .+|++|++++++. +|||+++.++|. .+...+++.++++|||+|||||++||++||+
T Consensus 81 ~~K~~~a~WRG~~~~~-~~R~~Lv~~~~~~p~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKyli~~dG~~~S~ 159 (256)
T smart00672 81 SDKNAYAYWRGNPTVA-SERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYKINIEGVAWSV 159 (256)
T ss_pred cccCcCccccCCCCCC-cchHHHHHHhcCCcccceeEEEEecCCCCChHHhcccCcCCCCHHHHhhcceEEecCCccchh
Confidence 9999999999999973 3899999987654 799999987774 2334556778999999999999999999999
Q ss_pred chHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhh--HHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhhhh
Q 046815 326 SLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRS--IKSVVDWGNANPSEAEKIGKAGQDFME-SLTMDR 402 (463)
Q Consensus 326 Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sd--L~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~~~ 402 (463)
||+++|+||||||++++.|+|||+++|+||+|||||+.+ ++| |+++|+|+++||++||+||+||++|++ +|++++
T Consensus 160 rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d--~sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~L~~~~ 237 (256)
T smart00672 160 RLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSD--LSCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLSMED 237 (256)
T ss_pred hHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCC--CchhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHH
Confidence 999999999999999999999999999999999999998 677 999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHhhcCCC
Q 046815 403 VYDYMLHLITEYSKLLDYK 421 (463)
Q Consensus 403 ~~~Y~~~LL~eYa~l~~~~ 421 (463)
++|||++||+||++|++|+
T Consensus 238 ~~~Y~~~ll~eya~l~~~~ 256 (256)
T smart00672 238 VYDYMFHLLQEYAKLLKYK 256 (256)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 9999999999999999985
No 4
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.77 E-value=0.0001 Score=60.72 Aligned_cols=81 Identities=9% Similarity=0.091 Sum_probs=67.8
Q ss_pred ceeccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhh
Q 046815 321 YAWSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLT 399 (463)
Q Consensus 321 ~s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~ 399 (463)
.+.+.|+--.|+||.+||...+ .-+...+.++.|++-++ + .+++.++++++.+||++.++||++|+++++ ..+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~---~~~~~~~~~~~~~~~~~-~--~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~~t 82 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS---PGLREIFEDGEHIITYN-D--PEELAEKIEYLLENPEERRRIAKNARERVLKRHT 82 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh---HHHHHHcCCCCeEEEEC-C--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhCC
Confidence 4567799999999999998765 33444477888999998 5 689999999999999999999999999998 888
Q ss_pred hhhHHHHH
Q 046815 400 MDRVYDYM 407 (463)
Q Consensus 400 ~~~~~~Y~ 407 (463)
-+.+..++
T Consensus 83 ~~~~~~~i 90 (92)
T PF13524_consen 83 WEHRAEQI 90 (92)
T ss_pred HHHHHHHH
Confidence 77766654
No 5
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=78.69 E-value=7.8 Score=38.31 Aligned_cols=141 Identities=18% Similarity=0.279 Sum_probs=83.1
Q ss_pred CCCCcccCCCCCcCCcccccccchHHHHHhhcCCCCCCcccccCeEEEeecCCCC-----ChhHHHHHH-ccCCCcccce
Q 046815 214 AHFDIPFPDWSFWGWSEVNLQPWNEEFKDIKHGSQAKSWKEKLPFAYWKGNPDVL-----SPLRVELMK-CNDSKLWGAE 287 (463)
Q Consensus 214 ~~~DIl~Pd~~fwgwpe~~i~~w~~~~~~i~~~~~~~pW~~K~pkafWRG~~t~~-----~~~R~~Lv~-~~~~~~~da~ 287 (463)
...||++|-+.... ....+.. ....+..+|.-.++|+|+.... ...|..|+. |.....+...
T Consensus 151 ~~~Di~~P~~~~~~----~~~~~~~--------~~~~~~~~R~~l~~f~g~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~ 218 (302)
T PF03016_consen 151 PGFDIVIPPFVPPS----SLPDWRP--------WPQRPPARRPYLLFFAGTIRPSSNDYSGGVRQRLLDECKSDPDFRCS 218 (302)
T ss_pred CCCCeecccccccc----ccCCccc--------cccCCccCCceEEEEeeeccccccccchhhhhHHHHhcccCCcceee
Confidence 45689999875421 1111110 0244677889999999997653 257888876 3332222211
Q ss_pred eccccchhhhhcCCCCCChhhhccccEEEeecCce-eccchHHHHcCCceEEeecCcchhhcccCCCCCCcee-ecCCCc
Q 046815 288 ILRQNWAEEAKDGFKKSKLSNQCNHRYKIYAEGYA-WSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHF-PIPSAD 365 (463)
Q Consensus 288 i~~~~w~~e~~~g~~~~~l~d~~~YKYll~vdG~s-~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYV-PV~~d~ 365 (463)
..... ..+ ...-++...+-||-+...|.+ +|.||---|.+|++.+.....+..=|.+.| +|.-+. -|..++
T Consensus 219 --~~~~~---~~~-~~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~l-dw~~fsv~v~~~~ 291 (302)
T PF03016_consen 219 --DGSET---CPS-PSEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVL-DWSRFSVRVPEAD 291 (302)
T ss_pred --ecccc---ccc-chHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCccccc-CHHHEEEEECHHH
Confidence 00000 000 011346778899999999996 899999999999988887666665565555 666553 233332
Q ss_pred hhhhHHHHH
Q 046815 366 LCRSIKSVV 374 (463)
Q Consensus 366 l~sdL~e~v 374 (463)
..+|++.+
T Consensus 292 -~~~l~~iL 299 (302)
T PF03016_consen 292 -LPELPEIL 299 (302)
T ss_pred -HHHHHHHH
Confidence 24444444
No 6
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=75.36 E-value=15 Score=38.64 Aligned_cols=86 Identities=10% Similarity=0.123 Sum_probs=63.2
Q ss_pred eccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcC-ChHHHHHHHHHHHHHHH-Hhhh
Q 046815 323 WSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNA-NPSEAEKIGKAGQDFME-SLTM 400 (463)
Q Consensus 323 ~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~-~d~~A~~IA~~g~~fa~-~L~~ 400 (463)
+..-+.--|+||-.|+..... -..+.+..+.+-+=+..+| .++|.++|..+.+ ++++.++++++|+++++ .++.
T Consensus 317 ~p~~llEAma~G~PVI~t~~~---g~~E~v~~~~~G~lv~~~d-~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~ 392 (406)
T PRK15427 317 IPVALMEAMAVGIPVVSTLHS---GIPELVEADKSGWLVPEND-AQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQ 392 (406)
T ss_pred ccHHHHHHHhCCCCEEEeCCC---CchhhhcCCCceEEeCCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCH
Confidence 455677889999888875432 1223345555555555544 6889999999888 99999999999999998 8988
Q ss_pred hhHHHHHHHHHH
Q 046815 401 DRVYDYMLHLIT 412 (463)
Q Consensus 401 ~~~~~Y~~~LL~ 412 (463)
+.+..=+.++++
T Consensus 393 ~~~~~~l~~~~~ 404 (406)
T PRK15427 393 QVINRELASLLQ 404 (406)
T ss_pred HHHHHHHHHHHh
Confidence 887766666654
No 7
>PRK10307 putative glycosyl transferase; Provisional
Probab=74.65 E-value=12 Score=38.72 Aligned_cols=84 Identities=10% Similarity=0.137 Sum_probs=58.4
Q ss_pred eccchHHHHcCCceEEeecCc---chhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hh
Q 046815 323 WSVSLKYILSCNSVALIISQQ---YKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SL 398 (463)
Q Consensus 323 ~S~Rlk~lL~~~SvVlk~~s~---y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L 398 (463)
....+--.|+||-.|+..... ..|-. . . +=+=++.+| .++|.++|..+.+|+++.++++++|+++++ .+
T Consensus 320 ~p~kl~eama~G~PVi~s~~~g~~~~~~i----~-~-~G~~~~~~d-~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~f 392 (412)
T PRK10307 320 LPSKLTNMLASGRNVVATAEPGTELGQLV----E-G-IGVCVEPES-VEALVAAIAALARQALLRPKLGTVAREYAERTL 392 (412)
T ss_pred CcHHHHHHHHcCCCEEEEeCCCchHHHHH----h-C-CcEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHc
Confidence 344455568999888876432 12211 1 2 222233333 688999999999999999999999999998 99
Q ss_pred hhhhHHHHHHHHHHH
Q 046815 399 TMDRVYDYMLHLITE 413 (463)
Q Consensus 399 ~~~~~~~Y~~~LL~e 413 (463)
+.+.+..-+..++++
T Consensus 393 s~~~~~~~~~~~~~~ 407 (412)
T PRK10307 393 DKENVLRQFIADIRG 407 (412)
T ss_pred CHHHHHHHHHHHHHH
Confidence 988877766555543
No 8
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=74.46 E-value=16 Score=35.15 Aligned_cols=84 Identities=11% Similarity=0.134 Sum_probs=58.8
Q ss_pred eeccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhh
Q 046815 322 AWSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTM 400 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~ 400 (463)
+.+..+.-.|++|-.|+..+.. .+.+.+....+-+-++.++ .+++.+++..+..+++..+++++++++.+. ..+.
T Consensus 287 ~~~~~~~Ea~~~g~pvI~~~~~---~~~~~~~~~~~g~~~~~~~-~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (374)
T cd03801 287 GFGLVLLEAMAAGLPVVASDVG---GIPEVVEDGETGLLVPPGD-PEALAEAILRLLDDPELRRRLGEAARERVAERFSW 362 (374)
T ss_pred cccchHHHHHHcCCcEEEeCCC---ChhHHhcCCcceEEeCCCC-HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCH
Confidence 5566778889999988876632 2222333344444445443 688999999999999999999999997777 8887
Q ss_pred hhHHHHHHH
Q 046815 401 DRVYDYMLH 409 (463)
Q Consensus 401 ~~~~~Y~~~ 409 (463)
+.+..=+..
T Consensus 363 ~~~~~~~~~ 371 (374)
T cd03801 363 DRVAARTEE 371 (374)
T ss_pred HHHHHHHHH
Confidence 776554333
No 9
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.40 E-value=13 Score=39.10 Aligned_cols=82 Identities=11% Similarity=0.152 Sum_probs=60.3
Q ss_pred hccccEEEeecC-------ceeccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCCh
Q 046815 309 QCNHRYKIYAEG-------YAWSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANP 381 (463)
Q Consensus 309 ~~~YKYll~vdG-------~s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d 381 (463)
+-.++..+++.- .+-+-|.--+++|+... -|.|.+-....++|+.-.+--.. ..|+.++++++.+||
T Consensus 255 ~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~l---iT~~~~~~e~~f~pgk~~iv~~d---~kdl~~~~~yll~h~ 328 (373)
T COG4641 255 FKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFL---ITDYWKDLEKFFKPGKDIIVYQD---SKDLKEKLKYLLNHP 328 (373)
T ss_pred ccccceeeeecHHHHHhhcCCchhhHHHHhhcCCcc---ccccHHHHHHhcCCchheEEecC---HHHHHHHHHHHhcCc
Confidence 445555665542 23467889999999843 34577766666778877765444 589999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 046815 382 SEAEKIGKAGQDFME 396 (463)
Q Consensus 382 ~~A~~IA~~g~~fa~ 396 (463)
+++++||+.|-+=+.
T Consensus 329 ~erkeiae~~ye~V~ 343 (373)
T COG4641 329 DERKEIAECAYERVL 343 (373)
T ss_pred chHHHHHHhhHHHHH
Confidence 999999999976544
No 10
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=68.48 E-value=30 Score=34.59 Aligned_cols=85 Identities=7% Similarity=0.049 Sum_probs=60.5
Q ss_pred ccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhhhh
Q 046815 324 SVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTMDR 402 (463)
Q Consensus 324 S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~~~ 402 (463)
+..+---|+||-.|+..+... ..+.+..+.+-+-++.++ .+++.+++..+.+++++.+++++++++++. ..+.+.
T Consensus 284 ~~~~~EAma~g~PvI~s~~~~---~~e~i~~~~~G~~~~~~~-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~ 359 (371)
T cd04962 284 GLAALEAMACGVPVVASNAGG---IPEVVKHGETGFLVDVGD-VEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSER 359 (371)
T ss_pred ccHHHHHHHcCCCEEEeCCCC---chhhhcCCCceEEcCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 344667788998887765421 333455555544455544 678999998888999999999999999977 888887
Q ss_pred HHHHHHHHHH
Q 046815 403 VYDYMLHLIT 412 (463)
Q Consensus 403 ~~~Y~~~LL~ 412 (463)
+..-+..+++
T Consensus 360 ~~~~~~~~y~ 369 (371)
T cd04962 360 IVPQYEALYR 369 (371)
T ss_pred HHHHHHHHHH
Confidence 7666655543
No 11
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=65.72 E-value=22 Score=35.47 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=58.1
Q ss_pred eccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhhh
Q 046815 323 WSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTMD 401 (463)
Q Consensus 323 ~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~~ 401 (463)
++..+.-.|+||-.|+..+.. -..+.+....+-+-++.++ .++|.++|+.+.++++..++++++|+++++ .++.+
T Consensus 283 ~~~~~~EA~a~G~PvI~s~~~---~~~e~i~~~~~g~~~~~~d-~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~ 358 (367)
T cd05844 283 LPVVLLEAQASGVPVVATRHG---GIPEAVEDGETGLLVPEGD-VAALAAALGRLLADPDLRARMGAAGRRRVEERFDLR 358 (367)
T ss_pred CchHHHHHHHcCCCEEEeCCC---CchhheecCCeeEEECCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHH
Confidence 456677889999988876532 1233344444544454433 578999999888999999999999999998 88877
Q ss_pred hHHHHH
Q 046815 402 RVYDYM 407 (463)
Q Consensus 402 ~~~~Y~ 407 (463)
.+..-+
T Consensus 359 ~~~~~l 364 (367)
T cd05844 359 RQTAKL 364 (367)
T ss_pred HHHHHH
Confidence 765543
No 12
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=63.68 E-value=35 Score=35.25 Aligned_cols=82 Identities=13% Similarity=0.158 Sum_probs=58.7
Q ss_pred eeccchHHHHcCCceEEeecCcchhhcccCC--CCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hh
Q 046815 322 AWSVSLKYILSCNSVALIISQQYKDFFSRGL--IPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SL 398 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L--~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L 398 (463)
+....+---|+||-.|+..+.. ...+ ..+.+++- ..+ .+++.++|..+.++++..++++++|+++++ ..
T Consensus 310 G~~~~~lEAma~G~PVV~t~~~-----~~~i~~~~~~g~lv-~~~--~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~f 381 (397)
T TIGR03087 310 GIQNKVLEAMAMAKPVVASPEA-----AEGIDALPGAELLV-AAD--PADFAAAILALLANPAEREELGQAARRRVLQHY 381 (397)
T ss_pred CcccHHHHHHHcCCCEEecCcc-----cccccccCCcceEe-CCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhC
Confidence 3445677789999988876421 1222 24456653 344 688999999999999999999999999998 88
Q ss_pred hhhhHHHHHHHHH
Q 046815 399 TMDRVYDYMLHLI 411 (463)
Q Consensus 399 ~~~~~~~Y~~~LL 411 (463)
+.+.+..-+..+|
T Consensus 382 sw~~~~~~~~~~l 394 (397)
T TIGR03087 382 HWPRNLARLDALL 394 (397)
T ss_pred CHHHHHHHHHHHh
Confidence 8777665555544
No 13
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=63.46 E-value=36 Score=33.40 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=55.0
Q ss_pred eeccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhh
Q 046815 322 AWSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFMESLTMD 401 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~~L~~~ 401 (463)
+++..+..-|+||-.|+..+.... +.+.....-+-+..+| .+++.++++.+.+++++.++++++++++++.++.+
T Consensus 281 ~~~~~~~Ea~a~G~PvI~~~~~~~----~~i~~~~~g~~~~~~d-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~s~~ 355 (366)
T cd03822 281 TQSGVLAYAIGFGKPVISTPVGHA----EEVLDGGTGLLVPPGD-PAALAEAIRRLLADPELAQALRARAREYARAMSWE 355 (366)
T ss_pred ccchHHHHHHHcCCCEEecCCCCh----heeeeCCCcEEEcCCC-HHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCCHH
Confidence 566667778999998887654332 2233334444444444 67899999999999999999999999998766555
Q ss_pred hHH
Q 046815 402 RVY 404 (463)
Q Consensus 402 ~~~ 404 (463)
.+.
T Consensus 356 ~~~ 358 (366)
T cd03822 356 RVA 358 (366)
T ss_pred HHH
Confidence 543
No 14
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=63.13 E-value=38 Score=32.58 Aligned_cols=80 Identities=14% Similarity=0.205 Sum_probs=57.0
Q ss_pred eeccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhh
Q 046815 322 AWSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTM 400 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~ 400 (463)
+.+..+.--|+||-.|+..+..- ..+.+..+.+-+-+..++ .+++.++++.+.+|++..+++++++++++. ..+.
T Consensus 275 ~~~~~~~Ea~~~G~Pvi~s~~~~---~~~~i~~~~~g~~~~~~~-~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 350 (359)
T cd03808 275 GLPRVLLEAMAMGRPVIATDVPG---CREAVIDGVNGFLVPPGD-AEALADAIERLIEDPELRARMGQAARKRAEEEFDE 350 (359)
T ss_pred CcchHHHHHHHcCCCEEEecCCC---chhhhhcCcceEEECCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCH
Confidence 45666778899998888765321 123333344444555544 678999999999999999999999999977 7777
Q ss_pred hhHHH
Q 046815 401 DRVYD 405 (463)
Q Consensus 401 ~~~~~ 405 (463)
+.+..
T Consensus 351 ~~~~~ 355 (359)
T cd03808 351 EIVVK 355 (359)
T ss_pred HHHHH
Confidence 66543
No 15
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=63.10 E-value=40 Score=34.75 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=54.6
Q ss_pred cchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-HhhhhhH
Q 046815 325 VSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTMDRV 403 (463)
Q Consensus 325 ~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~~~~ 403 (463)
..+---|+||-.|+..+.. -..+.+..+.+=+-++.+| .++|.++|..+.+++++.++++++|++.++ +++.+.+
T Consensus 315 ~~llEAmA~G~PVIas~~~---g~~e~i~~~~~G~lv~~~d-~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~ 390 (396)
T cd03818 315 WSLLEAMACGCLVVGSDTA---PVREVITDGENGLLVDFFD-PDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVC 390 (396)
T ss_pred hHHHHHHHCCCCEEEcCCC---CchhhcccCCceEEcCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3467789999988876542 2223344445544455433 678999999999999999999999999998 7876654
No 16
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=62.85 E-value=43 Score=33.85 Aligned_cols=84 Identities=11% Similarity=0.129 Sum_probs=57.7
Q ss_pred eccchHHHHcCCceEEeecC-cchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhh
Q 046815 323 WSVSLKYILSCNSVALIISQ-QYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTM 400 (463)
Q Consensus 323 ~S~Rlk~lL~~~SvVlk~~s-~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~ 400 (463)
.+.-+.-.|+||-.|+..+. ...|. +..+.+=+-++.+| .+++.+++..+.+++++.++++++|++.+. .++.
T Consensus 285 ~~~~~lEAma~G~Pvv~s~~~g~~e~----i~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~ 359 (374)
T TIGR03088 285 ISNTILEAMASGLPVIATAVGGNPEL----VQHGVTGALVPPGD-AVALARALQPYVSDPAARRAHGAAGRARAEQQFSI 359 (374)
T ss_pred CchHHHHHHHcCCCEEEcCCCCcHHH----hcCCCceEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCH
Confidence 44556778899988887653 12222 22333333344433 678999999998999999999999999987 8888
Q ss_pred hhHHHHHHHHH
Q 046815 401 DRVYDYMLHLI 411 (463)
Q Consensus 401 ~~~~~Y~~~LL 411 (463)
+.+..-+..+.
T Consensus 360 ~~~~~~~~~~y 370 (374)
T TIGR03088 360 NAMVAAYAGLY 370 (374)
T ss_pred HHHHHHHHHHH
Confidence 87655544443
No 17
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=61.02 E-value=34 Score=33.36 Aligned_cols=79 Identities=11% Similarity=0.188 Sum_probs=54.2
Q ss_pred eccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhhh
Q 046815 323 WSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTMD 401 (463)
Q Consensus 323 ~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~~ 401 (463)
.+..+--.|+||-.|+..+..... +.+..+.+-+-++.++ .+++.++|..+..++++.++++++++++++ ..+.+
T Consensus 312 ~p~~~~Ea~~~G~pvi~~~~~~~~---~~~~~~~~g~~~~~~~-~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 387 (394)
T cd03794 312 SPSKLFEYMAAGKPVLASVDGESA---ELVEEAGAGLVVPPGD-PEALAAAILELLDDPEERAEMGENGRRYVEEKFSRE 387 (394)
T ss_pred CchHHHHHHHCCCcEEEecCCCch---hhhccCCcceEeCCCC-HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHH
Confidence 345567788999888776543221 2222223333334333 678999999888999999999999999998 88877
Q ss_pred hHHH
Q 046815 402 RVYD 405 (463)
Q Consensus 402 ~~~~ 405 (463)
.+..
T Consensus 388 ~~~~ 391 (394)
T cd03794 388 KLAE 391 (394)
T ss_pred HHHH
Confidence 6543
No 18
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=59.25 E-value=23 Score=31.46 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=48.7
Q ss_pred eeccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHH
Q 046815 322 AWSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDF 394 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~f 394 (463)
+++..+.--|+||.+|+.... ..+.+.+..+.+-+-++..+ ..++.++|+-+.++++..+.++++|++|
T Consensus 104 ~~~~~~~Ea~~~g~pvI~~~~---~~~~e~~~~~~~g~~~~~~~-~~~l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 104 GFGLSLLEAMACGCPVIASDI---GGNNEIINDGVNGFLFDPND-IEELADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp SS-HHHHHHHHTT-EEEEESS---THHHHHSGTTTSEEEESTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccceeeccc---cCCceeeccccceEEeCCCC-HHHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 556678889999998887663 23333444455444444433 6889999999999999999999999875
No 19
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=58.42 E-value=26 Score=37.04 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=56.6
Q ss_pred cchHHHHcCCceEEeecC-cchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhhhh
Q 046815 325 VSLKYILSCNSVALIISQ-QYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTMDR 402 (463)
Q Consensus 325 ~Rlk~lL~~~SvVlk~~s-~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~~~ 402 (463)
.-+---|+||-.|+..+. ...|.. ..+.+=+=|..+| .++|.++|..+.++++++++++++|++.+. .++.+.
T Consensus 355 ~~~lEAma~G~PvV~s~~gg~~eiv----~~~~~G~lv~~~d-~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~ 429 (439)
T TIGR02472 355 LTLLEAAACGLPIVATDDGGPRDII----ANCRNGLLVDVLD-LEAIASALEDALSDSSQWQLWSRNGIEGVRRHYSWDA 429 (439)
T ss_pred cHHHHHHHhCCCEEEeCCCCcHHHh----cCCCcEEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 346778899988877653 233333 2333322233333 578999999999999999999999999887 888777
Q ss_pred HHHHHHHHH
Q 046815 403 VYDYMLHLI 411 (463)
Q Consensus 403 ~~~Y~~~LL 411 (463)
+..=+..+|
T Consensus 430 ~~~~~~~l~ 438 (439)
T TIGR02472 430 HVEKYLRIL 438 (439)
T ss_pred HHHHHHHHh
Confidence 665554444
No 20
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=58.42 E-value=14 Score=26.41 Aligned_cols=30 Identities=37% Similarity=0.515 Sum_probs=23.7
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHhhhccc
Q 046815 7 TPARSPSYLFPCVISLSVISLAALFLDYKVD 37 (463)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (463)
+.-|.|--++..|.+...++++.++ |||-=
T Consensus 4 ttGRIPLWlVgtv~G~~vi~lvglF-fYGsY 33 (40)
T PF01788_consen 4 TTGRIPLWLVGTVAGIAVIGLVGLF-FYGSY 33 (40)
T ss_dssp -TTSS-HHHHHHHHHHHHHHHHHHH-HHCTT
T ss_pred CCCcccchHHHHHHHHHHHHHHHHh-eeccc
Confidence 4679999999999999999888888 88743
No 21
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=57.78 E-value=67 Score=31.69 Aligned_cols=78 Identities=15% Similarity=0.284 Sum_probs=53.0
Q ss_pred eccchHHHHcCCceEEeecCc-chhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhh
Q 046815 323 WSVSLKYILSCNSVALIISQQ-YKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTM 400 (463)
Q Consensus 323 ~S~Rlk~lL~~~SvVlk~~s~-y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~ 400 (463)
++..+.--|+||-.|+..+.. ..|. +....+=+-+..++ .+++.+++..+.+++++.++++++++++++ ..+.
T Consensus 277 ~g~~~~Eam~~g~PvI~~~~~~~~e~----~~~~~~g~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~ 351 (365)
T cd03825 277 FPNTAIEALACGTPVVAFDVGGIPDI----VDHGVTGYLAKPGD-PEDLAEGIEWLLADPDEREELGEAARELAENEFDS 351 (365)
T ss_pred ccHHHHHHHhcCCCEEEecCCCChhh----eeCCCceEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCH
Confidence 455567788899888865432 2222 22222333344433 578899999888999999999999999998 7776
Q ss_pred hhHHH
Q 046815 401 DRVYD 405 (463)
Q Consensus 401 ~~~~~ 405 (463)
+.+..
T Consensus 352 ~~~~~ 356 (365)
T cd03825 352 RVQAK 356 (365)
T ss_pred HHHHH
Confidence 65543
No 22
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=56.37 E-value=45 Score=33.76 Aligned_cols=77 Identities=14% Similarity=0.243 Sum_probs=52.3
Q ss_pred hHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCc-----hhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhh
Q 046815 327 LKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSAD-----LCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTM 400 (463)
Q Consensus 327 lk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~-----l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~ 400 (463)
..--|+||-.|+..+... ..+.+.....-+-++.++ +.++|.++|..+.+++++.+++++++++.++ ..+.
T Consensus 297 ~lEA~a~G~PvI~s~~~~---~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~ 373 (388)
T TIGR02149 297 NLEAMACGTPVVASATGG---IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSW 373 (388)
T ss_pred HHHHHHcCCCEEEeCCCC---HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCH
Confidence 356688888887765321 222334444444454433 1267899999888999999999999999887 8887
Q ss_pred hhHHHH
Q 046815 401 DRVYDY 406 (463)
Q Consensus 401 ~~~~~Y 406 (463)
+.+..-
T Consensus 374 ~~~~~~ 379 (388)
T TIGR02149 374 GSIAKK 379 (388)
T ss_pred HHHHHH
Confidence 765443
No 23
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=54.54 E-value=40 Score=33.16 Aligned_cols=77 Identities=14% Similarity=0.237 Sum_probs=51.9
Q ss_pred eccchHHHHcCCceEEeecCc-chhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhh
Q 046815 323 WSVSLKYILSCNSVALIISQQ-YKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTM 400 (463)
Q Consensus 323 ~S~Rlk~lL~~~SvVlk~~s~-y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~ 400 (463)
++..+.-.|+||-.|+..+.. ..+.... .+.+=.-++.+| .+++.++|..+.+++++.++++++|+++++ +.+.
T Consensus 278 ~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~~~g~~~~~~d-~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 353 (357)
T cd03795 278 FGIVLLEAMAFGKPVISTEIGTGGSYVNL---HGVTGLVVPPGD-PAALAEAIRRLLEDPELRERLGEAARERAEEEFTA 353 (357)
T ss_pred cchHHHHHHHcCCCEEecCCCCchhHHhh---CCCceEEeCCCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcch
Confidence 334466678888888876532 1222111 133323333333 688999999999999999999999999998 8776
Q ss_pred hhH
Q 046815 401 DRV 403 (463)
Q Consensus 401 ~~~ 403 (463)
+.+
T Consensus 354 ~~~ 356 (357)
T cd03795 354 DRM 356 (357)
T ss_pred Hhh
Confidence 654
No 24
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=54.46 E-value=58 Score=31.66 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=56.6
Q ss_pred ccEEEeecCc-eeccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHH
Q 046815 312 HRYKIYAEGY-AWSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKA 390 (463)
Q Consensus 312 YKYll~vdG~-s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~ 390 (463)
...++..-.. +.+..+---|+||-.|+..+.. .+.+.+..+.+-+-++.++. ++.+++..+.++++..++++++
T Consensus 279 ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~---~~~~~i~~~~~g~~~~~~~~--~~~~~i~~l~~~~~~~~~~~~~ 353 (374)
T cd03817 279 ADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP---GLPDLVADGENGFLFPPGDE--ALAEALLRLLQDPELRRRLSKN 353 (374)
T ss_pred cCEEEecccccCcChHHHHHHHcCCcEEEeCCC---ChhhheecCceeEEeCCCCH--HHHHHHHHHHhChHHHHHHHHH
Confidence 3444433222 3455677789999888876542 23344555566666666532 8999999999999999999999
Q ss_pred HHHHHH-Hh
Q 046815 391 GQDFME-SL 398 (463)
Q Consensus 391 g~~fa~-~L 398 (463)
++++++ +.
T Consensus 354 ~~~~~~~~~ 362 (374)
T cd03817 354 AEESAEKFS 362 (374)
T ss_pred HHHHHHHHH
Confidence 999988 44
No 25
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=54.18 E-value=73 Score=30.76 Aligned_cols=79 Identities=11% Similarity=0.294 Sum_probs=54.8
Q ss_pred eeccchHHHHcCCceEEeecCc-chhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhh
Q 046815 322 AWSVSLKYILSCNSVALIISQQ-YKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLT 399 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~-y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~ 399 (463)
+++..+.-.|+||-.|+..+.. ..|+..+ .-++ +..++ .+++.+++..+.+++++.+++++++++.++ .++
T Consensus 280 ~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~-----~g~~-~~~~~-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s 352 (365)
T cd03807 280 GFPNVLLEAMACGLPVVATDVGDNAELVGD-----TGFL-VPPGD-PEALAEAIEALLADPALRQALGEAARERIEENFS 352 (365)
T ss_pred cCCcHHHHHHhcCCCEEEcCCCChHHHhhc-----CCEE-eCCCC-HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 4566677888999888776543 2333333 1122 22222 578999999998999999999999999988 888
Q ss_pred hhhHHHHH
Q 046815 400 MDRVYDYM 407 (463)
Q Consensus 400 ~~~~~~Y~ 407 (463)
.+.+..=+
T Consensus 353 ~~~~~~~~ 360 (365)
T cd03807 353 IEAMVEAY 360 (365)
T ss_pred HHHHHHHH
Confidence 77655433
No 26
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=54.08 E-value=59 Score=33.63 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=57.1
Q ss_pred chHHHHcCCceEEeecCcchhhcccCCCCCCc-eeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-HhhhhhH
Q 046815 326 SLKYILSCNSVALIISQQYKDFFSRGLIPTKN-HFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTMDRV 403 (463)
Q Consensus 326 Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~H-YVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~~~~ 403 (463)
-+--.|+||-.|+..... -..+.+..+.+ |+=++..| .++|.+++..+.++++. ++++++|++.+. .++.+.+
T Consensus 293 ~~lEAma~G~PVI~s~~g---g~~Eiv~~~~~G~~l~~~~d-~~~la~~I~~ll~d~~~-~~~~~~ar~~~~~~fsw~~~ 367 (380)
T PRK15484 293 VAVEAMAAGKPVLASTKG---GITEFVLEGITGYHLAEPMT-SDSIISDINRTLADPEL-TQIAEQAKDFVFSKYSWEGV 367 (380)
T ss_pred HHHHHHHcCCCEEEeCCC---CcHhhcccCCceEEEeCCCC-HHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHhCCHHHH
Confidence 355668888877775531 11222334443 21222322 67899999998888875 789999999987 8888888
Q ss_pred HHHHHHHHHHHH
Q 046815 404 YDYMLHLITEYS 415 (463)
Q Consensus 404 ~~Y~~~LL~eYa 415 (463)
..=+.++|..|.
T Consensus 368 a~~~~~~l~~~~ 379 (380)
T PRK15484 368 TQRFEEQIHNWF 379 (380)
T ss_pred HHHHHHHHHHhc
Confidence 777777777663
No 27
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=53.92 E-value=45 Score=32.83 Aligned_cols=78 Identities=12% Similarity=0.177 Sum_probs=54.8
Q ss_pred eeccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhh
Q 046815 322 AWSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTM 400 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~ 400 (463)
+++..+.--|+||-.|+..+.. ...+.+..+..=+-+..++ .+++.++|..+.+++++.++++++|+++++ ..+.
T Consensus 273 ~~~~~~~Ea~a~G~Pvi~~~~~---~~~~~i~~~~~g~~~~~~~-~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~ 348 (355)
T cd03799 273 GLPVVLMEAMAMGLPVISTDVS---GIPELVEDGETGLLVPPGD-PEALADAIERLLDDPELRREMGEAGRARVEEEFDI 348 (355)
T ss_pred CccHHHHHHHHcCCCEEecCCC---CcchhhhCCCceEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCH
Confidence 3455677788899888865432 2233344443434445433 688999999999999999999999999987 7776
Q ss_pred hhH
Q 046815 401 DRV 403 (463)
Q Consensus 401 ~~~ 403 (463)
+.+
T Consensus 349 ~~~ 351 (355)
T cd03799 349 RKQ 351 (355)
T ss_pred HHH
Confidence 654
No 28
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=47.80 E-value=1.3e+02 Score=30.87 Aligned_cols=81 Identities=7% Similarity=0.092 Sum_probs=55.7
Q ss_pred eccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhh
Q 046815 323 WSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFMESLTMDR 402 (463)
Q Consensus 323 ~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~~L~~~~ 402 (463)
++..+.--|+||-.|+..+... ..+.+..+.+-+-++.+| .+++.++|..+.++++..++++++++++++.++.+.
T Consensus 315 ~g~~~lEAma~G~Pvi~~~~~~---~~e~i~~~~~g~~~~~~d-~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~fsw~~ 390 (405)
T TIGR03449 315 FGLVAMEAQACGTPVVAARVGG---LPVAVADGETGLLVDGHD-PADWADALARLLDDPRTRIRMGAAAVEHAAGFSWAA 390 (405)
T ss_pred cChHHHHHHHcCCCEEEecCCC---cHhhhccCCceEECCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHH
Confidence 3445777888888887765321 222344555556666544 688999999888899999999999998877556665
Q ss_pred HHHHH
Q 046815 403 VYDYM 407 (463)
Q Consensus 403 ~~~Y~ 407 (463)
+..=+
T Consensus 391 ~~~~~ 395 (405)
T TIGR03449 391 TADGL 395 (405)
T ss_pred HHHHH
Confidence 54433
No 29
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=47.57 E-value=37 Score=29.30 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCCccCCCCCC
Q 046815 16 FPCVISLSVISLAALFLDYKVDDFASKTKTLAGHNLEPTPWHLFPQRTF 64 (463)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 64 (463)
+..++|+.++.+|.++ . ..|..-.|||+|-+ |+|-+
T Consensus 12 l~~aiG~~lal~i~~l-----t---r~tlPhvGDniH~L-----PhGG~ 47 (104)
T PF01307_consen 12 LAAAIGVSLALIIFTL-----T---RSTLPHVGDNIHSL-----PHGGR 47 (104)
T ss_pred hHHHHHHHHHHHHHHh-----h---cCCCCCCCCCCCCC-----CCCCc
Confidence 5555555555444333 2 24566679998754 67765
No 30
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=47.27 E-value=1e+02 Score=32.61 Aligned_cols=179 Identities=13% Similarity=0.124 Sum_probs=95.8
Q ss_pred CCCCeEEEecCCCcccccccCCCCCCcC-eeEeccCC-CCCCcccCCCCCcCCcccccccchHHHHHhhcCCCCCCcccc
Q 046815 178 MVPDVDIMFDCMDKPVIDKKEHGSFPLP-LFRYCTND-AHFDIPFPDWSFWGWSEVNLQPWNEEFKDIKHGSQAKSWKEK 255 (463)
Q Consensus 178 ~LPDvef~~n~~D~P~~~~~~~~~~~~P-lfs~~k~~-~~~DIl~Pd~~fwgwpe~~i~~w~~~~~~i~~~~~~~pW~~K 255 (463)
+.|+.-.++.-+--|.-.... ..... .|.+.-+- .++|+-.|.-+| .+++.+ .. ...-...|..|
T Consensus 129 R~p~q~~i~~s~ESP~~~~~~--~~~~~~~fN~T~Tyr~dSd~~~pygy~-~~~~~~---------~~-~~p~~~~~~~k 195 (372)
T KOG2619|consen 129 RKPGQPWIWMSMESPSNSPGL--SLIDGRLFNWTMTYRRDSDLFVPYGYL-EKPEAN---------PV-LVPVNSILSAK 195 (372)
T ss_pred CCCCCceEEEeccCCCCCccc--cccccccccceEEEeccCCCCCccceE-eecccC---------ce-ecccccccccc
Confidence 456666666666666421110 11222 55554332 567888887444 233310 00 01112468899
Q ss_pred cCeEEEeecCCCCChhHHHHHHccCCCcccceeccccchhhhhcCCCCCChhhhccccEEEeecCcee----ccchHHHH
Q 046815 256 LPFAYWKGNPDVLSPLRVELMKCNDSKLWGAEILRQNWAEEAKDGFKKSKLSNQCNHRYKIYAEGYAW----SVSLKYIL 331 (463)
Q Consensus 256 ~pkafWRG~~t~~~~~R~~Lv~~~~~~~~da~i~~~~w~~e~~~g~~~~~l~d~~~YKYll~vdG~s~----S~Rlk~lL 331 (463)
...+.|..+.-.....|.++++.-... +.+.++.....+..+.+...--++-..+|||.|-+|-..- -=.|-..|
T Consensus 196 ~~~~aw~vSnc~~~~~R~~~~~~L~k~-l~iD~YG~c~~~~~~~~~~~~~~~~~s~YKFyLAfENS~c~DYVTEKfw~al 274 (372)
T KOG2619|consen 196 TKLAAWLVSNCIPRSARLDYYKELMKH-LEIDSYGECLRKNANRDPSDCLLETLSHYKFYLAFENSNCEDYVTEKFWNAL 274 (372)
T ss_pred cceeeeeccccCcchHHHHHHHHHHhh-CceeeccccccccccCCCCCcceeecccceEEEEecccCCcccccHHHHhhh
Confidence 999999998876677898876532111 2222332211110000111012344559999999997633 22455778
Q ss_pred cCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhh
Q 046815 332 SCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWG 377 (463)
Q Consensus 332 ~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~ 377 (463)
-.+||.+...+..+ +...|-.=||-|+. +++++|.++++
T Consensus 275 ~~gsVPVvlg~~n~----e~fvP~~SfI~vdD---F~s~~ela~yl 313 (372)
T KOG2619|consen 275 DAGSVPVVLGPPNY----ENFVPPDSFIHVDD---FQSPQELAAYL 313 (372)
T ss_pred hcCcccEEECCccc----cccCCCcceEehhh---cCCHHHHHHHH
Confidence 88898777766433 34556667777765 45555555443
No 31
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=45.24 E-value=61 Score=32.02 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=53.3
Q ss_pred eccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhhh
Q 046815 323 WSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTMD 401 (463)
Q Consensus 323 ~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~~ 401 (463)
++..+--.|+||-.|+..+... ..+.+.....+++ .++ .+.++++++.+++++.+++++++++.++ .++.+
T Consensus 281 ~~~~~~EAma~G~PvI~s~~~~---~~e~~~~~g~~~~--~~~---~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~ 352 (363)
T cd04955 281 TNPSLLEAMAYGCPVLASDNPF---NREVLGDKAIYFK--VGD---DLASLLEELEADPEEVSAMAKAARERIREKYTWE 352 (363)
T ss_pred CChHHHHHHHcCCCEEEecCCc---cceeecCCeeEec--Cch---HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 4445777899999888765431 1222222333433 221 2889999999999999999999999888 78877
Q ss_pred hHHHHHHH
Q 046815 402 RVYDYMLH 409 (463)
Q Consensus 402 ~~~~Y~~~ 409 (463)
.+..=+..
T Consensus 353 ~~~~~~~~ 360 (363)
T cd04955 353 KIADQYEE 360 (363)
T ss_pred HHHHHHHH
Confidence 76554433
No 32
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=44.13 E-value=1.3e+02 Score=28.66 Aligned_cols=79 Identities=8% Similarity=0.124 Sum_probs=53.0
Q ss_pred eeccchHHHHcCCceEEeecCcc-hhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHhhh
Q 046815 322 AWSVSLKYILSCNSVALIISQQY-KDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFMESLTM 400 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~y-~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~~L~~ 400 (463)
+++..+.-.|+||-.|+..+... .+. .+..+.+=+-++..+ .+++.+++..+.++++..++++++++++++.++.
T Consensus 264 ~~~~~~~Ea~a~G~Pvi~~~~~~~~~~---~~~~~~~g~~~~~~~-~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~ 339 (348)
T cd03820 264 GFPMVLLEAMAFGLPVISFDCPTGPSE---IIEDGVNGLLVPNGD-VEALAEALLRLMEDEELRKRMGANARESAERFSI 339 (348)
T ss_pred ccCHHHHHHHHcCCCEEEecCCCchHh---hhccCcceEEeCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCH
Confidence 34566788899999888764321 111 122222333344433 5789999999999999999999999888776665
Q ss_pred hhHH
Q 046815 401 DRVY 404 (463)
Q Consensus 401 ~~~~ 404 (463)
+.+.
T Consensus 340 ~~~~ 343 (348)
T cd03820 340 ENII 343 (348)
T ss_pred HHHH
Confidence 5543
No 33
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=43.15 E-value=33 Score=35.89 Aligned_cols=67 Identities=13% Similarity=0.272 Sum_probs=43.9
Q ss_pred chHHHHcCCceEEeecC--cchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 046815 326 SLKYILSCNSVALIISQ--QYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME 396 (463)
Q Consensus 326 Rlk~lL~~~SvVlk~~s--~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~ 396 (463)
..---|+||..|+.... .+.|-. +.+...---+++. | .++|.+++..+.++++.+++++++|+++++
T Consensus 336 ~~lEAma~G~PVI~g~~~~~~~e~~-~~~~~~g~~~~~~-d--~~~La~~l~~ll~~~~~~~~m~~~a~~~~~ 404 (425)
T PRK05749 336 NPLEPAAFGVPVISGPHTFNFKEIF-ERLLQAGAAIQVE-D--AEDLAKAVTYLLTDPDARQAYGEAGVAFLK 404 (425)
T ss_pred CHHHHHHhCCCEEECCCccCHHHHH-HHHHHCCCeEEEC-C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 35667888888776321 122221 1221122234433 3 578999999999999999999999999987
No 34
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=42.22 E-value=1.2e+02 Score=30.81 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=53.7
Q ss_pred cchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-HhhhhhH
Q 046815 325 VSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTMDRV 403 (463)
Q Consensus 325 ~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~~~~ 403 (463)
.-+.--|+||-.|+..+..- ..+.+..+..-+-++.. +++.+++..+..++++.++++++|++.+. ..+.+.+
T Consensus 288 ~~~lEA~a~G~Pvv~s~~~~---~~~~i~~~~~g~~~~~~---~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~ 361 (372)
T cd03792 288 LTVTEALWKGKPVIAGPVGG---IPLQIEDGETGFLVDTV---EEAAVRILYLLRDPELRRKMGANAREHVRENFLITRH 361 (372)
T ss_pred HHHHHHHHcCCCEEEcCCCC---chhhcccCCceEEeCCc---HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 34666788888777654321 12234455555555533 46677888888899999999999999887 7777766
Q ss_pred HHHHHHHH
Q 046815 404 YDYMLHLI 411 (463)
Q Consensus 404 ~~Y~~~LL 411 (463)
..=|..++
T Consensus 362 ~~~~~~~~ 369 (372)
T cd03792 362 LKDYLYLI 369 (372)
T ss_pred HHHHHHHH
Confidence 55444443
No 35
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=40.16 E-value=1e+02 Score=29.79 Aligned_cols=70 Identities=9% Similarity=0.145 Sum_probs=48.1
Q ss_pred eeccchHHHHcCCceEEeecCc-chhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 046815 322 AWSVSLKYILSCNSVALIISQQ-YKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME 396 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~-y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~ 396 (463)
+++..+--.|+||-.|+..+.. ..|+ +..+..=+-++.+| .+++.+++..+.+|++..+++++++++...
T Consensus 275 ~~~~~~~Ea~a~G~Pvi~~~~~~~~e~----i~~~~~g~~~~~~d-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 345 (359)
T cd03823 275 NFPLVIREALAAGVPVIASDIGGMAEL----VRDGVNGLLFPPGD-AEDLAAALERLIDDPDLLERLRAGIEPPRS 345 (359)
T ss_pred CCChHHHHHHHCCCCEEECCCCCHHHH----hcCCCcEEEECCCC-HHHHHHHHHHHHhChHHHHHHHHhHHHhhh
Confidence 4555677788999888776543 2233 33333333444444 578999999999999999999999877654
No 36
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=38.46 E-value=1.6e+02 Score=28.52 Aligned_cols=78 Identities=6% Similarity=0.040 Sum_probs=52.8
Q ss_pred eeccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhh
Q 046815 322 AWSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFMESLTMD 401 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~~L~~~ 401 (463)
+++..+.-.|+||-.|+..+... ..+.+.....-+-+..++ .+++.+++..+..|+++.++++++++++++..+.+
T Consensus 278 ~~~~~~lEa~a~g~PvI~~~~~~---~~~~i~~~~~g~~~~~~~-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 353 (364)
T cd03814 278 TFGLVVLEAMASGLPVVAPDAGG---PADIVTDGENGLLVEPGD-AEAFAAALAALLADPELRRRMAARARAEAERRSWE 353 (364)
T ss_pred cCCcHHHHHHHcCCCEEEcCCCC---chhhhcCCcceEEcCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHH
Confidence 34566788899999888765432 223344434444444443 46688889888899999999999999887644444
Q ss_pred hH
Q 046815 402 RV 403 (463)
Q Consensus 402 ~~ 403 (463)
.+
T Consensus 354 ~~ 355 (364)
T cd03814 354 AF 355 (364)
T ss_pred HH
Confidence 33
No 37
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=37.91 E-value=90 Score=31.58 Aligned_cols=73 Identities=8% Similarity=0.072 Sum_probs=52.6
Q ss_pred hHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-HhhhhhHH
Q 046815 327 LKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTMDRVY 404 (463)
Q Consensus 327 lk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~~~~~ 404 (463)
.---|+||-.|+..+... ..+.+..+..-+=+..| .+++.+++..+.+++++.++++++|+++++ ..+.+.+.
T Consensus 316 ~lEAma~G~PvI~s~~~~---~~e~i~~~~~g~~~~~~--~~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~ 389 (392)
T cd03805 316 PLEAMYAGKPVIACNSGG---PLETVVDGETGFLCEPT--PEEFAEAMLKLANDPDLADRMGAAGRKRVKEKFSTEAFA 389 (392)
T ss_pred HHHHHHcCCCEEEECCCC---cHHHhccCCceEEeCCC--HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcCHHHHh
Confidence 456789999888765432 22334454544445555 578889999888999999999999999887 77776653
No 38
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=37.13 E-value=1.5e+02 Score=31.78 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=52.2
Q ss_pred eccchHHHHcCCceEEeecC-cchhhcccCCCC---CCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-H
Q 046815 323 WSVSLKYILSCNSVALIISQ-QYKDFFSRGLIP---TKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-S 397 (463)
Q Consensus 323 ~S~Rlk~lL~~~SvVlk~~s-~y~e~f~~~L~P---~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~ 397 (463)
.+..+---|+||-.|+..+. ...|...+. .. +..=+=+..+| .++|.++|..+.+|+++.++++++|++.++ +
T Consensus 383 ~p~~vlEAma~G~PVVatd~g~~~elv~~~-~~~~~g~~G~lv~~~d-~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~ 460 (475)
T cd03813 383 QPLVILEAMAAGIPVVATDVGSCRELIEGA-DDEALGPAGEVVPPAD-PEALARAILRLLKDPELRRAMGEAGRKRVERY 460 (475)
T ss_pred CChHHHHHHHcCCCEEECCCCChHHHhcCC-cccccCCceEEECCCC-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 34456677888888777543 223333221 00 12222233333 678999999999999999999999999888 7
Q ss_pred hhhhhHHH
Q 046815 398 LTMDRVYD 405 (463)
Q Consensus 398 L~~~~~~~ 405 (463)
.+.+.+..
T Consensus 461 ~s~~~~~~ 468 (475)
T cd03813 461 YTLERMID 468 (475)
T ss_pred CCHHHHHH
Confidence 77555443
No 39
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=35.97 E-value=1.4e+02 Score=28.57 Aligned_cols=85 Identities=14% Similarity=0.224 Sum_probs=55.2
Q ss_pred eeccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhh
Q 046815 322 AWSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTM 400 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~ 400 (463)
+++..+.-.|++|..|+..+.... .+.+..+..=+-++.++ .+++.+++..+.+++++ ++++++++.+. .++.
T Consensus 290 ~~~~~~~Ea~~~G~pvI~~~~~~~---~~~~~~~~~g~~~~~~~-~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~ 363 (377)
T cd03798 290 GFGLVLLEAMACGLPVVATDVGGI---PEIITDGENGLLVPPGD-PEALAEAILRLLADPWL--RLGRAARRRVAERFSW 363 (377)
T ss_pred cCChHHHHHHhcCCCEEEecCCCh---HHHhcCCcceeEECCCC-HHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhH
Confidence 456677888999998887653221 22233344312334433 67889999999888887 67778877776 8887
Q ss_pred hhHHHHHHHHHH
Q 046815 401 DRVYDYMLHLIT 412 (463)
Q Consensus 401 ~~~~~Y~~~LL~ 412 (463)
+.+..-+..+++
T Consensus 364 ~~~~~~~~~~~~ 375 (377)
T cd03798 364 ENVAERLLELYR 375 (377)
T ss_pred HHHHHHHHHHHh
Confidence 766555555443
No 40
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=33.75 E-value=84 Score=32.96 Aligned_cols=76 Identities=9% Similarity=0.075 Sum_probs=53.4
Q ss_pred CceeccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCC---hHHHHHHHHHHHHHHH
Q 046815 320 GYAWSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNAN---PSEAEKIGKAGQDFME 396 (463)
Q Consensus 320 G~s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~---d~~A~~IA~~g~~fa~ 396 (463)
|.+.+..+--.|+||-.|+..... -..+.++.+.+=+-+. | .++|.++|..+.++ +++.++++++|+++.+
T Consensus 327 ~~~~p~~~~Eama~G~PVI~s~~~---~~~eiv~~~~~G~lv~-d--~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~ 400 (415)
T cd03816 327 GLDLPMKVVDMFGCGLPVCALDFK---CIDELVKHGENGLVFG-D--SEELAEQLIDLLSNFPNRGKLNSLKKGAQEESE 400 (415)
T ss_pred ccCCcHHHHHHHHcCCCEEEeCCC---CHHHHhcCCCCEEEEC-C--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Confidence 344566677789999988875532 1223344444444443 4 68999999998888 8999999999999987
Q ss_pred -Hhhhh
Q 046815 397 -SLTMD 401 (463)
Q Consensus 397 -~L~~~ 401 (463)
.+..+
T Consensus 401 ~~~~~~ 406 (415)
T cd03816 401 LRWDEN 406 (415)
T ss_pred cCHHHH
Confidence 65543
No 41
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=33.14 E-value=1.3e+02 Score=29.43 Aligned_cols=75 Identities=7% Similarity=0.122 Sum_probs=50.4
Q ss_pred eccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhh
Q 046815 323 WSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFMESLTMDR 402 (463)
Q Consensus 323 ~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~~L~~~~ 402 (463)
++..+.-.|++|-.|+..+.. .+-+.+.....+++.. + .+++.+++..+.++++..++++++++++++..+.+.
T Consensus 285 ~~~~~~Ea~a~G~pvI~~~~~---~~~e~~~~~~~~~~~~-~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~sw~~ 358 (365)
T cd03809 285 FGLPVLEAMACGTPVIASNIS---SLPEVAGDAALYFDPL-D--PEALAAAIERLLEDPALREELRERGLARAKRFSWEK 358 (365)
T ss_pred CCCCHHHHhcCCCcEEecCCC---CccceecCceeeeCCC-C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCHHH
Confidence 455577788999888875542 1222223333344332 2 578999999999999999999999987776555444
Q ss_pred H
Q 046815 403 V 403 (463)
Q Consensus 403 ~ 403 (463)
+
T Consensus 359 ~ 359 (365)
T cd03809 359 T 359 (365)
T ss_pred H
Confidence 3
No 42
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=32.76 E-value=1.2e+02 Score=30.39 Aligned_cols=76 Identities=11% Similarity=0.106 Sum_probs=51.3
Q ss_pred chHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-HhhhhhHH
Q 046815 326 SLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTMDRVY 404 (463)
Q Consensus 326 Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~~~~~ 404 (463)
.+.-.|+||-.|+..+.. ...+.+.....=+-++.++ .+++.++|..+.+++++.++++++++++++ ..+.+.+.
T Consensus 318 ~l~Ea~a~G~Pvi~s~~~---~~~e~i~~~~~g~~~~~~~-~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~ 393 (398)
T cd03800 318 TALEAMACGLPVVATAVG---GPRDIVVDGVTGLLVDPRD-PEALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVA 393 (398)
T ss_pred HHHHHHhcCCCEEECCCC---CHHHHccCCCCeEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 456678888877765432 1222233333333344433 678999998888999999999999999996 77766654
Q ss_pred H
Q 046815 405 D 405 (463)
Q Consensus 405 ~ 405 (463)
.
T Consensus 394 ~ 394 (398)
T cd03800 394 A 394 (398)
T ss_pred H
Confidence 4
No 43
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=32.43 E-value=1.1e+02 Score=30.06 Aligned_cols=75 Identities=11% Similarity=0.155 Sum_probs=49.9
Q ss_pred eeccchHHHHcCCceEEeecC-cchhhcccCCCCCCceeecCCCchhhhHHHHH-HhhcCChHHHHHHHHHHHHHHH-Hh
Q 046815 322 AWSVSLKYILSCNSVALIISQ-QYKDFFSRGLIPTKNHFPIPSADLCRSIKSVV-DWGNANPSEAEKIGKAGQDFME-SL 398 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s-~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v-~w~~~~d~~A~~IA~~g~~fa~-~L 398 (463)
+++..+.-.|+||-.|+..+. ...|... ....-+-+..++ .+++.++| ..+..++++.++++++|+++++ +.
T Consensus 276 ~~~~~l~EA~a~G~PvI~~~~~~~~e~i~----~~~~g~~~~~~~-~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f 350 (355)
T cd03819 276 AFGRTAVEAQAMGRPVIASDHGGARETVR----PGETGLLVPPGD-AEALAQALDQILSLLPEGRAKMFAKARMCVETLF 350 (355)
T ss_pred CCchHHHHHHhcCCCEEEcCCCCcHHHHh----CCCceEEeCCCC-HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhh
Confidence 444567778889987776553 2333332 222222244333 67888999 4666789999999999999998 76
Q ss_pred hhh
Q 046815 399 TMD 401 (463)
Q Consensus 399 ~~~ 401 (463)
+.+
T Consensus 351 ~~~ 353 (355)
T cd03819 351 SYD 353 (355)
T ss_pred hhc
Confidence 654
No 44
>PRK02565 photosystem II reaction center protein J; Provisional
Probab=32.42 E-value=20 Score=25.42 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=22.8
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHhhhcc
Q 046815 7 TPARSPSYLFPCVISLSVISLAALFLDYKV 36 (463)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (463)
..-|.|-.++..+.+...++.+.++ |||-
T Consensus 3 ~~GriPLWlV~tv~G~~vi~~vgiF-fyGs 31 (39)
T PRK02565 3 TEGRIPLWLVATVAGMGVIFVVGLF-FYGS 31 (39)
T ss_pred cCCccceeehhhhhHHHHHhheeeE-Eeec
Confidence 4578998889999998887777777 7763
No 45
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=31.67 E-value=2.2e+02 Score=27.52 Aligned_cols=76 Identities=8% Similarity=0.282 Sum_probs=51.4
Q ss_pred eeccchHHHHcCCceEEeecCc-chhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhh
Q 046815 322 AWSVSLKYILSCNSVALIISQQ-YKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLT 399 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~-y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~ 399 (463)
+++..+---|+||-.|+..+.. ..+...+ ...++ +..+ -+++.+++..+.+++++.++++++++++++ ..+
T Consensus 293 ~~~~~~~Eama~G~PvI~~~~~~~~~~~~~----~~~~~-~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s 365 (375)
T cd03821 293 NFGIVVAEALACGTPVVTTDKVPWQELIEY----GCGWV-VDDD--VDALAAALRRALELPQRLKAMGENGRALVEERFS 365 (375)
T ss_pred CCCcHHHHHHhcCCCEEEcCCCCHHHHhhc----CceEE-eCCC--hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Confidence 3455567788999888776532 2233222 22232 2333 378899999999999999999999999976 777
Q ss_pred hhhHH
Q 046815 400 MDRVY 404 (463)
Q Consensus 400 ~~~~~ 404 (463)
.+.+.
T Consensus 366 ~~~~~ 370 (375)
T cd03821 366 WTAIA 370 (375)
T ss_pred HHHHH
Confidence 66543
No 46
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=31.46 E-value=85 Score=26.10 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=23.2
Q ss_pred CCC-CcchHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCC
Q 046815 9 ARS-PSYLFPCVISLSVISLAALFLDYKVDDFASKTKTLAGHNLE 52 (463)
Q Consensus 9 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (463)
.++ |+.+...+|+++.+ |+++++|++-| .|++-.
T Consensus 20 ~~l~pn~lMtILivLVII--iLlImlfqsSS--------~~~~s~ 54 (85)
T PF10717_consen 20 NGLNPNTLMTILIVLVII--ILLIMLFQSSS--------NGNSSS 54 (85)
T ss_pred cccChhHHHHHHHHHHHH--HHHHHHHhccC--------CCCCCC
Confidence 344 88877777777666 44445788888 677766
No 47
>cd07353 harmonin_N N-terminal protein-binding module of harmonin. Harmonin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. Harmonin contains a single copy of this domain, which is found at the N-terminus of all three harmonin isoform classes (a, b and c), and which preceeds the first PDZ protein-binding domain, PDZ1. This harmonin_N domain binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network.
Probab=29.20 E-value=1e+02 Score=24.82 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhhcC
Q 046815 385 EKIGKAGQDFME-SLTMDRVYDYMLHLITEYSKLLD 419 (463)
Q Consensus 385 ~~IA~~g~~fa~-~L~~~~~~~Y~~~LL~eYa~l~~ 419 (463)
++||++-+.-++ .+-.++..+|++.+|+.|..-++
T Consensus 2 ~~iarefr~kV~~~ie~EaEkd~lY~~Lr~YHqSm~ 37 (79)
T cd07353 2 RKIAREFRHKVELLIDNEAEKDYLYDVLRMYHQSMN 37 (79)
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhccC
Confidence 468888887788 88889999999999999987654
No 48
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=27.61 E-value=2e+02 Score=30.09 Aligned_cols=78 Identities=12% Similarity=0.045 Sum_probs=53.2
Q ss_pred eccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecC-CCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-Hhhh
Q 046815 323 WSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIP-SADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME-SLTM 400 (463)
Q Consensus 323 ~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~-~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~-~L~~ 400 (463)
.+..+.-.|+||-.|+..+..- ..+.+..+.+=+-+. .++ .+++.++|..+.+++++.++++++|+++++ ..+.
T Consensus 323 ~p~~llEAma~G~PVIas~vgg---~~e~i~~~~~G~l~~~~~~-~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~ 398 (407)
T cd04946 323 LPVSIMEAMSFGIPVIATNVGG---TPEIVDNGGNGLLLSKDPT-PNELVSSLSKFIDNEEEYQTMREKAREKWEENFNA 398 (407)
T ss_pred ccHHHHHHHHcCCCEEeCCCCC---cHHHhcCCCcEEEeCCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCH
Confidence 4556777899998888755321 122333343222222 222 578999999988899999999999999988 8877
Q ss_pred hhHH
Q 046815 401 DRVY 404 (463)
Q Consensus 401 ~~~~ 404 (463)
+..+
T Consensus 399 ~~~~ 402 (407)
T cd04946 399 SKNY 402 (407)
T ss_pred HHhH
Confidence 6654
No 49
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=26.62 E-value=2.5e+02 Score=28.17 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=52.4
Q ss_pred eeccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhh
Q 046815 322 AWSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFMESLTMD 401 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~~L~~~ 401 (463)
+++..+---|+||-.|+..+..+- -.+.+.++.+=.-++.++ .++|.++|..+.++++..+++.+++.+.++..+.+
T Consensus 290 g~~~~~lEAma~G~PvI~~~~~~g--~~~~v~~~~~G~lv~~~d-~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~ 366 (372)
T cd04949 290 GFGLSLMEALSHGLPVISYDVNYG--PSEIIEDGENGYLVPKGD-IEALAEAIIELLNDPKLLQKFSEAAYENAERYSEE 366 (372)
T ss_pred ccChHHHHHHhCCCCEEEecCCCC--cHHHcccCCCceEeCCCc-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHH
Confidence 344456667889988887553321 112234444444444433 67899999999999999999999998886655555
Q ss_pred hH
Q 046815 402 RV 403 (463)
Q Consensus 402 ~~ 403 (463)
.+
T Consensus 367 ~~ 368 (372)
T cd04949 367 NV 368 (372)
T ss_pred HH
Confidence 44
No 50
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=24.97 E-value=5.4e+02 Score=27.27 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=51.3
Q ss_pred cchHHHHcCCceEEeecCcchhhcccCCCC---CCceeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhh
Q 046815 325 VSLKYILSCNSVALIISQQYKDFFSRGLIP---TKNHFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFMESLTMD 401 (463)
Q Consensus 325 ~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P---~~HYVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~~L~~~ 401 (463)
.-+--.|+||-.|+..+.. -..+.+.. +..=+=+..+| .+++.++|..+.++++..++++++|++.++.++-+
T Consensus 346 ~~vlEAmA~G~PVI~s~~g---g~~eiv~~~~~~~~G~lv~~~d-~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~fsw~ 421 (465)
T PLN02871 346 FVVLEAMASGVPVVAARAG---GIPDIIPPDQEGKTGFLYTPGD-VDDCVEKLETLLADPELRERMGAAAREEVEKWDWR 421 (465)
T ss_pred cHHHHHHHcCCCEEEcCCC---CcHhhhhcCCCCCceEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHH
Confidence 3455677888777654321 11112222 22222233333 67899999999999999999999999887633322
Q ss_pred hH----HH-HHHHHHHHHHhh
Q 046815 402 RV----YD-YMLHLITEYSKL 417 (463)
Q Consensus 402 ~~----~~-Y~~~LL~eYa~l 417 (463)
.+ .. .+..++..+++.
T Consensus 422 ~~a~~l~~~~Y~~~~~~~~~~ 442 (465)
T PLN02871 422 AATRKLRNEQYSAAIWFWRKK 442 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 22 11 335555555543
No 51
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=23.12 E-value=1.6e+02 Score=32.06 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=58.4
Q ss_pred eccchHHHHcCCceEEeecCcchhhcccCCCCCCc--eeecC-----CCchhhhHHHHHHhhcCChHHHHHHHHHHHHHH
Q 046815 323 WSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKN--HFPIP-----SADLCRSIKSVVDWGNANPSEAEKIGKAGQDFM 395 (463)
Q Consensus 323 ~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~H--YVPV~-----~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa 395 (463)
++--+.--|+||-.|+..+..+- -.+.+..+++ .||.. .+++.+.|.++|..+. ++++.++++++|.+.+
T Consensus 405 fgl~~lEAma~G~PVI~~dv~~G--~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll-~~~~~~~~~~~a~~~a 481 (500)
T TIGR02918 405 FGLTLMEAVGSGLGMIGFDVNYG--NPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF-NSNDIDAFHEYSYQIA 481 (500)
T ss_pred ccHHHHHHHHhCCCEEEecCCCC--CHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence 34446778889988887653211 0122334443 34432 1222456778888877 4667899999999988
Q ss_pred HHhhhhhHHHHHHHHHHH
Q 046815 396 ESLTMDRVYDYMLHLITE 413 (463)
Q Consensus 396 ~~L~~~~~~~Y~~~LL~e 413 (463)
+.++.+.+..-|..+|++
T Consensus 482 ~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 482 EGFLTANIIEKWKKLVRE 499 (500)
T ss_pred HhcCHHHHHHHHHHHHhh
Confidence 888899999888888865
No 52
>PF05456 eIF_4EBP: Eukaryotic translation initiation factor 4E binding protein (EIF4EBP); InterPro: IPR008606 This family consists of several eukaryotic translation initiation factor 4E binding proteins (EIF4EBP1, -2 and -3). Translation initiation in eukaryotes is mediated by the cap structure (m7GpppN, where N is any nucleotide) present at the 5' end of all cellular mRNAs, except organellar. The cap is recognised by eukaryotic initiation factor 4F (eIF4F), which consists of three polypeptides, including eIF4E, the cap-binding protein subunit. The interaction of the cap with eIF4E facilitates the binding of the ribosome to the mRNA. eIF4E activity is regulated in part by translational repressors, 4E-BP1, 4E-BP2 and 4E-BP3 which bind to it and prevent its assembly into eIF4F [].; GO: 0008190 eukaryotic initiation factor 4E binding, 0045947 negative regulation of translational initiation; PDB: 2JGB_B 2V8Y_F 1WKW_B 3HXG_C 3U7X_D 3M94_C 3M93_C 2V8X_B 3HXI_C 2V8W_B ....
Probab=21.73 E-value=35 Score=30.11 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=8.4
Q ss_pred HHHHHHHHhcCC-CCCCCCCC
Q 046815 444 QRQNLEKAAASP-SPYPPCTL 463 (463)
Q Consensus 444 ~~~~~~~~~~~~-~~~~~~~~ 463 (463)
+|+||++-+-+| |-++||.|
T Consensus 51 dR~FLL~~RnSPlSrTPP~~L 71 (116)
T PF05456_consen 51 DRKFLLECRNSPLSRTPPRNL 71 (116)
T ss_dssp -HHHHHCTCG-----------
T ss_pred eHHHHHHhcCCCcccCCCCcc
Confidence 799999999888 78888865
Done!