Query 046815
Match_columns 463
No_of_seqs 219 out of 835
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 07:47:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046815.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046815hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 52.9 5.7 0.00041 24.5 2.9 28 10-38 1-28 (34)
2 d2iw1a1 c.87.1.8 (A:2-371) Lip 44.9 12 0.00086 32.8 5.3 70 322-396 281-352 (370)
3 d2bisa1 c.87.1.8 (A:1-437) Gly 37.4 30 0.0022 31.2 7.0 88 323-419 341-430 (437)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 35.2 9.6 0.0007 22.4 1.8 12 14-25 8-19 (30)
5 d1veha_ d.52.8.1 (A:) HIRA-int 31.0 25 0.0018 26.5 4.3 50 139-191 38-89 (92)
6 d2bfwa1 c.87.1.8 (A:218-413) G 24.8 83 0.0061 25.2 7.2 70 322-396 123-193 (196)
7 d2f9fa1 c.87.1.8 (A:2-167) Fir 21.0 43 0.0032 26.4 4.3 67 322-394 98-166 (166)
8 d1ugla_ g.3.7.5 (A:) S-locus p 20.1 27 0.0019 22.6 2.1 24 58-84 27-50 (50)
9 d2dt6a1 a.217.1.1 (A:48-110) S 18.9 97 0.0071 21.2 5.3 38 381-418 7-58 (63)
10 d2dt7b1 a.217.1.1 (B:134-217) 17.3 52 0.0038 24.1 3.6 34 383-416 37-84 (84)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=52.87 E-value=5.7 Score=24.54 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=22.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhhcccc
Q 046815 10 RSPSYLFPCVISLSVISLAALFLDYKVDD 38 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (463)
|.|-.++..|.+...++++.++ |||-=+
T Consensus 1 riPLWlv~tv~G~~vi~~vG~F-fYGsYs 28 (34)
T d2axtj1 1 RIPLWIVATVAGMGVIVIVGLF-FYGAYA 28 (34)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-HHHTTT
T ss_pred CCcEEEeeehhhhhhHhheeee-eeeeec
Confidence 5687788899998888888888 887443
No 2
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=44.95 E-value=12 Score=32.79 Aligned_cols=70 Identities=7% Similarity=0.077 Sum_probs=48.2
Q ss_pred eeccchHHHHcCCceEEeecCc-chhhcccCCCCCCc-eeecCCCchhhhHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 046815 322 AWSVSLKYILSCNSVALIISQQ-YKDFFSRGLIPTKN-HFPIPSADLCRSIKSVVDWGNANPSEAEKIGKAGQDFME 396 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~-y~e~f~~~L~P~~H-YVPV~~d~l~sdL~e~v~w~~~~d~~A~~IA~~g~~fa~ 396 (463)
+++..+.--|+||-.|+..+.. ..|. +..+.+ ++-++..| .++|.++|..+.+|++..++++++|+++++
T Consensus 281 ~~~~~~~EAma~G~PvI~s~~~g~~e~----i~~~~~G~l~~~~~d-~~~la~~i~~ll~d~~~~~~~~~~ar~~~~ 352 (370)
T d2iw1a1 281 AAGIVLLEAITAGLPVLTTAVCGYAHY----IADANCGTVIAEPFS-QEQLNEVLRKALTQSPLRMAWAENARHYAD 352 (370)
T ss_dssp SSCHHHHHHHHHTCCEEEETTSTTTHH----HHHHTCEEEECSSCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cccceeeecccCCeeEEEeCCCChHHH----hcCCCceEEEcCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 3455567778899887765432 2232 223344 33334333 678999999888999999999999999997
No 3
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=37.36 E-value=30 Score=31.20 Aligned_cols=88 Identities=8% Similarity=0.126 Sum_probs=56.0
Q ss_pred eccchHHHHcCCceEEeecCcc-hhhcccCCCCCCceeecCCCchhhhHHHHHHhhc-CChHHHHHHHHHHHHHHHHhhh
Q 046815 323 WSVSLKYILSCNSVALIISQQY-KDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGN-ANPSEAEKIGKAGQDFMESLTM 400 (463)
Q Consensus 323 ~S~Rlk~lL~~~SvVlk~~s~y-~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~-~~d~~A~~IA~~g~~fa~~L~~ 400 (463)
++..+.--|+||-.|+..+..- .|. +.....|+ |+.+| .++|.++|..+. .++++.+++++++++.++.++.
T Consensus 341 ~~~~~~Eama~G~Pvi~~~~g~~~e~----i~~~~G~~-~~~~d-~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~ 414 (437)
T d2bisa1 341 FGLVALEAMCLGAIPIASAVGGLRDI----ITNETGIL-VKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMSFSW 414 (437)
T ss_dssp SCHHHHHHHTTTCEEEEESCTTHHHH----CCTTTCEE-ECTTC-HHHHHHHHHHHHTTTTSCTHHHHHHHHHHHHHSCH
T ss_pred cchHHHHHHHCCCCEEEeCCCCcHHh----EECCcEEE-ECCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCH
Confidence 3445666789999888765432 222 22222343 34333 578888887654 5778899999999998875576
Q ss_pred hhHHHHHHHHHHHHHhhcC
Q 046815 401 DRVYDYMLHLITEYSKLLD 419 (463)
Q Consensus 401 ~~~~~Y~~~LL~eYa~l~~ 419 (463)
+.+. .+++.-|.+++.
T Consensus 415 ~~~a---~~~~~iY~~~i~ 430 (437)
T d2bisa1 415 EKSA---ERYVKAYTGSID 430 (437)
T ss_dssp HHHH---HHHHHHHHTCSC
T ss_pred HHHH---HHHHHHHHHHHH
Confidence 6654 344445766653
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=35.18 E-value=9.6 Score=22.39 Aligned_cols=12 Identities=33% Similarity=1.032 Sum_probs=8.6
Q ss_pred chHHHHHHHHHH
Q 046815 14 YLFPCVISLSVI 25 (463)
Q Consensus 14 ~~~~~~~~~~~~ 25 (463)
+++.|+||+.+|
T Consensus 8 ~ifac~i~lfff 19 (30)
T d2axtt1 8 FIFACIIALFFF 19 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467788887665
No 5
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.04 E-value=25 Score=26.46 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=36.4
Q ss_pred EEEEEECCEEEEecccccccc-chhhHH-HHHHHHHHhcCCCCCCeEEEecCCCc
Q 046815 139 LRILIVRGKLYVDPYYDCVQS-RAMFTI-WGFLQLLRRYPGMVPDVDIMFDCMDK 191 (463)
Q Consensus 139 ~rv~I~~G~lyv~~~~~~~~s-R~~~~l-~~ll~ll~~~~~~LPDvef~~n~~D~ 191 (463)
--+-|.||.|||.-.+.|.+= -...|+ .+|.++|+.+ +|++.-+.++.|.
T Consensus 38 ~lv~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~---vpev~~V~~v~~~ 89 (92)
T d1veha_ 38 IYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFY---IPEVEGVEQVSGP 89 (92)
T ss_dssp CEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHH---CSSCCCEEECSCS
T ss_pred EEEEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHHH---CCCcceEEEcCCC
Confidence 456789999999988887542 122344 5778888774 8999888888874
No 6
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=24.83 E-value=83 Score=25.21 Aligned_cols=70 Identities=4% Similarity=0.006 Sum_probs=45.9
Q ss_pred eeccchHHHHcCCceEEeecCcchhhcccCCCCCCceeecCCCchhhhHHHHHHhh-cCChHHHHHHHHHHHHHHH
Q 046815 322 AWSVSLKYILSCNSVALIISQQYKDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWG-NANPSEAEKIGKAGQDFME 396 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~y~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~-~~~d~~A~~IA~~g~~fa~ 396 (463)
+++..+.-.|+||-+|+........ +.+ +..+-+-+..++ .+++.++|..+ ..+.++.++|.++|++.+.
T Consensus 123 ~~~~~~~Eam~~G~pvI~~~~~~~~---e~i-~~~~g~~~~~~~-~~~l~~~i~~~l~~~~~~~~~~~~~a~~~a~ 193 (196)
T d2bfwa1 123 PFGLVALEAMCLGAIPIASAVGGLR---DII-TNETGILVKAGD-PGELANAILKALELSRSDLSKFRENCKKRAM 193 (196)
T ss_dssp SSCHHHHHHHHTTCEEEEESCHHHH---HHC-CTTTCEEECTTC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhcCceeeecCCCccc---eee-cCCceeeECCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3556677889999999887643222 212 223323344443 67888888664 4477889999999998875
No 7
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.97 E-value=43 Score=26.43 Aligned_cols=67 Identities=10% Similarity=0.210 Sum_probs=42.1
Q ss_pred eeccchHHHHcCCceEEeecCcc-hhhcccCCCCCCceeecCCCchhhhHHHHHHhhcCChHH-HHHHHHHHHHH
Q 046815 322 AWSVSLKYILSCNSVALIISQQY-KDFFSRGLIPTKNHFPIPSADLCRSIKSVVDWGNANPSE-AEKIGKAGQDF 394 (463)
Q Consensus 322 s~S~Rlk~lL~~~SvVlk~~s~y-~e~f~~~L~P~~HYVPV~~d~l~sdL~e~v~w~~~~d~~-A~~IA~~g~~f 394 (463)
+++..+.--|+||-.|+..+... .|+ +.....-.=++.| .+++.+++..+.+|+++ .+.+.++|++|
T Consensus 98 ~~~~~~~Ea~~~g~pvi~s~~~~~~e~----i~~~~~g~~~~~d--~~~~~~~i~~l~~~~~~~~~~~~~~a~~f 166 (166)
T d2f9fa1 98 DFGLTPIEAMASGKPVIAVNEGGFKET----VINEKTGYLVNAD--VNEIIDAMKKVSKNPDKFKKDCFRRAKEF 166 (166)
T ss_dssp CSCHHHHHHHHTTCCEEEESSHHHHHH----CCBTTTEEEECSC--HHHHHHHHHHHHHCTTTTHHHHHHHHHTC
T ss_pred cccccccccccccccceeecCCcceee----ecCCcccccCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHhCC
Confidence 44555677889999888876542 333 3333432223444 67888888888888654 44566666654
No 8
>d1ugla_ g.3.7.5 (A:) S-locus pollen protein {Brassica rapa [TaxId: 3711]}
Probab=20.06 E-value=27 Score=22.63 Aligned_cols=24 Identities=17% Similarity=0.490 Sum_probs=14.8
Q ss_pred cCCCCCCCccccccccceeeecccccc
Q 046815 58 LFPQRTFKEESRRSQAYKIVHCTYLTC 84 (463)
Q Consensus 58 ~~p~~~~~~~~~~~~~~~~~~c~~~~c 84 (463)
|.|.|.|.|..+-- +.-.|.|.+|
T Consensus 27 ly~~gqc~csdskm---nthscdcksc 50 (50)
T d1ugla_ 27 LYPRGQCTCSDSKM---NTHSCDCKSC 50 (50)
T ss_dssp HCCCSSCCCBCCSS---SEEBCCSSCC
T ss_pred ccCCCcceeccccc---cccccccCcC
Confidence 57888888844432 3356666555
No 9
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.94 E-value=97 Score=21.16 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHH-H------------hhhh-hHHHHHHHHHHHHHhhc
Q 046815 381 PSEAEKIGKAGQDFME-S------------LTMD-RVYDYMLHLITEYSKLL 418 (463)
Q Consensus 381 d~~A~~IA~~g~~fa~-~------------L~~~-~~~~Y~~~LL~eYa~l~ 418 (463)
+..|+-||++|.+|-. . |.+. ....|++..|.+|.+--
T Consensus 7 ~~tA~fVak~G~~fE~~l~~~e~~np~F~FL~~~~~~h~YY~~~l~~~~~g~ 58 (63)
T d2dt6a1 7 DKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGK 58 (63)
T ss_dssp HHHHHHHHHHCTHHHHHHHHHSTTCGGGGGGSTTSTTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcHHHHHHHHHhccCCCcCcCCCCCCCCcHHHHHHHHHHHcCC
Confidence 3468888888888755 2 2333 35689999999997643
No 10
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.33 E-value=52 Score=24.07 Aligned_cols=34 Identities=24% Similarity=0.627 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHH-H------------hhh-hhHHHHHHHHHHHHHh
Q 046815 383 EAEKIGKAGQDFME-S------------LTM-DRVYDYMLHLITEYSK 416 (463)
Q Consensus 383 ~A~~IA~~g~~fa~-~------------L~~-~~~~~Y~~~LL~eYa~ 416 (463)
.|+-+|++|.+|-. . |.+ ....-|++.+|++|++
T Consensus 37 tA~fVa~~G~~fe~~l~~~~~~Np~F~FL~~~~~~~~yY~~lv~~Y~~ 84 (84)
T d2dt7b1 37 TAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK 84 (84)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCHHHHHHHHHcccCCCceeccCCCCcCcHHHHHHHHHHhC
Confidence 47777777777655 2 222 2347899999999974
Done!