Query 046816
Match_columns 96
No_of_seqs 96 out of 108
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 04:44:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08137 DVL: DVL family; Int 99.5 7.4E-16 1.6E-20 81.9 -0.5 19 71-89 1-19 (19)
2 smart00107 BTK Bruton's tyrosi 46.1 7.3 0.00016 22.9 0.2 13 16-28 8-20 (36)
3 PF15654 Tox-WTIP: Toxin with 34.0 20 0.00042 23.4 0.7 13 76-88 25-37 (54)
4 PF00779 BTK: BTK motif; Inte 30.0 19 0.0004 20.7 0.1 10 18-27 5-14 (32)
5 PF14766 RPA_interact_N: Repli 24.4 67 0.0015 19.2 1.9 20 59-78 16-35 (42)
6 KOG4064 Cysteine dioxygenase C 22.9 19 0.0004 28.4 -1.0 7 85-91 74-80 (196)
7 cd08784 Death_DRs Death Domain 22.9 96 0.0021 19.9 2.5 30 62-93 23-52 (79)
8 PHA02673 ORF109 EEV glycoprote 22.3 70 0.0015 24.6 2.0 19 67-89 19-37 (161)
9 KOG1541 Predicted protein carb 18.7 49 0.0011 27.4 0.6 13 15-27 8-20 (270)
10 smart00070 GLUCA Glucagon like 17.8 1.4E+02 0.0031 16.5 2.1 22 60-81 4-25 (27)
No 1
>PF08137 DVL: DVL family; InterPro: IPR012552 This family consists of the DVL family of proteins. In a gain-of-function genetic screen for genes that influence fruit development in Arabidopsis, DEVIL (DVL) gene was identified. DVL is a small protein and over expression of the protein results in pleiotropic phenotypes featured by shortened stature, rounder rosette leaves, clustered inflorescences, shortened pedicles, and siliques with pronged tips. DVL family is a novel class of small polypeptides and the over expression phenotypes suggest that these polypeptides may have a role in plant development [].
Probab=99.53 E-value=7.4e-16 Score=81.90 Aligned_cols=19 Identities=74% Similarity=1.471 Sum_probs=18.5
Q ss_pred HhhhhhhHHHHHHHHHHHh
Q 046816 71 REQRARFYIMRRCVTMLIC 89 (96)
Q Consensus 71 KEQRaRlYIiRRCv~MLLC 89 (96)
||||+|||||||||+||||
T Consensus 1 keqr~r~YIirrCv~mLlc 19 (19)
T PF08137_consen 1 KEQRARLYIIRRCVVMLLC 19 (19)
T ss_pred CCcceEEEeHHHhHHHhcC
Confidence 7999999999999999998
No 2
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=46.09 E-value=7.3 Score=22.88 Aligned_cols=13 Identities=38% Similarity=0.899 Sum_probs=10.3
Q ss_pred CCCccccchhhcc
Q 046816 16 APPQFYLDEKWKL 28 (96)
Q Consensus 16 ~~p~~y~DeKWKl 28 (96)
--|.+|+|++|-=
T Consensus 8 yHP~~~~~G~W~C 20 (36)
T smart00107 8 YHPSFWVDGKWLC 20 (36)
T ss_pred cCCCceeCCeEcc
Confidence 3578999999953
No 3
>PF15654 Tox-WTIP: Toxin with a conserved tryptophan and TIP tripeptide motif
Probab=34.03 E-value=20 Score=23.41 Aligned_cols=13 Identities=38% Similarity=0.439 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHH
Q 046816 76 RFYIMRRCVTMLI 88 (96)
Q Consensus 76 RlYIiRRCv~MLL 88 (96)
--|+|-|||-||-
T Consensus 25 ~gY~iYR~vRmlP 37 (54)
T PF15654_consen 25 AGYLIYRGVRMLP 37 (54)
T ss_pred hhhhhhhHHhhcc
Confidence 3599999999983
No 4
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=30.04 E-value=19 Score=20.72 Aligned_cols=10 Identities=30% Similarity=0.694 Sum_probs=7.8
Q ss_pred Cccccchhhc
Q 046816 18 PQFYLDEKWK 27 (96)
Q Consensus 18 p~~y~DeKWK 27 (96)
|-+|++++|-
T Consensus 5 Pg~~~~g~W~ 14 (32)
T PF00779_consen 5 PGAWRGGKWL 14 (32)
T ss_dssp SS-EETTCES
T ss_pred CCcccCCcCc
Confidence 7899999994
No 5
>PF14766 RPA_interact_N: Replication protein A interacting N-terminal
Probab=24.39 E-value=67 Score=19.19 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=17.1
Q ss_pred ccchhhHHHHHHHhhhhhhH
Q 046816 59 RCSFSRKCARLVREQRARFY 78 (96)
Q Consensus 59 ~~sf~~rc~~~vKEQRaRlY 78 (96)
+..|.++|..-||+.|.+|.
T Consensus 16 Ke~lR~rC~~R~r~~R~~lL 35 (42)
T PF14766_consen 16 KETLRERCLERVRESRTQLL 35 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999874
No 6
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=22.88 E-value=19 Score=28.44 Aligned_cols=7 Identities=43% Similarity=1.583 Sum_probs=5.5
Q ss_pred HHHHhhc
Q 046816 85 TMLICWR 91 (96)
Q Consensus 85 ~MLLCWh 91 (96)
.|+|||-
T Consensus 74 LmILCWG 80 (196)
T KOG4064|consen 74 LMILCWG 80 (196)
T ss_pred EEEEEec
Confidence 4899993
No 7
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=22.88 E-value=96 Score=19.89 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=19.0
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 046816 62 FSRKCARLVREQRARFYIMRRCVTMLICWRDY 93 (96)
Q Consensus 62 f~~rc~~~vKEQRaRlYIiRRCv~MLLCWhd~ 93 (96)
|+..=...++..-.+ .-.+|.-||..|.+-
T Consensus 23 ls~~~I~~ie~~~~~--~~eq~~~mL~~W~~k 52 (79)
T cd08784 23 LSDNEIKVAELDNPQ--HRDRVYELLRIWRNK 52 (79)
T ss_pred CCHHHHHHHHHcCCc--hHHHHHHHHHHHHhc
Confidence 444434444444444 458999999999763
No 8
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=22.31 E-value=70 Score=24.61 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=13.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHh
Q 046816 67 ARLVREQRARFYIMRRCVTMLIC 89 (96)
Q Consensus 67 ~~~vKEQRaRlYIiRRCv~MLLC 89 (96)
..-||.|+++ |||+.|+++
T Consensus 19 ~as~~r~k~~----~R~i~l~~R 37 (161)
T PHA02673 19 VASVKRQKAI----RRYIKLFFR 37 (161)
T ss_pred hhHHHHHHHH----HHHHHHHHH
Confidence 4557778875 888877764
No 9
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=18.69 E-value=49 Score=27.36 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=11.1
Q ss_pred CCCCccccchhhc
Q 046816 15 SAPPQFYLDEKWK 27 (96)
Q Consensus 15 ~~~p~~y~DeKWK 27 (96)
.+|||+|.||-|-
T Consensus 8 ~~PpelfYnd~eA 20 (270)
T KOG1541|consen 8 GAPPELFYNDTEA 20 (270)
T ss_pred cCCcceeechhhh
Confidence 4899999999883
No 10
>smart00070 GLUCA Glucagon like hormones.
Probab=17.79 E-value=1.4e+02 Score=16.52 Aligned_cols=22 Identities=9% Similarity=0.300 Sum_probs=18.3
Q ss_pred cchhhHHHHHHHhhhhhhHHHH
Q 046816 60 CSFSRKCARLVREQRARFYIMR 81 (96)
Q Consensus 60 ~sf~~rc~~~vKEQRaRlYIiR 81 (96)
..|+.-..+++.++.+|=|+-+
T Consensus 4 g~ftsdysk~L~~~~ar~fl~~ 25 (27)
T smart00070 4 GTFTSDYSKYLDQLAAKKFLQW 25 (27)
T ss_pred ccccHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999988743
Done!