Query 046816
Match_columns 96
No_of_seqs 96 out of 108
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 07:48:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046816.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046816hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pcfa_ d.18.1.1 (A:) Transcri 51.8 1.3 9.3E-05 26.6 -0.3 13 19-31 26-40 (66)
2 d1ggla_ b.60.1.2 (A:) Cellular 27.1 6.4 0.00047 24.6 0.1 15 17-33 1-15 (134)
3 d1fada_ a.77.1.2 (A:) FADD (Mo 23.3 13 0.00094 21.4 1.0 14 79-92 49-62 (95)
4 d1kqwa_ b.60.1.2 (A:) Cellular 20.6 10 0.00075 23.6 0.1 15 17-33 1-15 (134)
5 d1yuaa2 g.41.3.3 (A:66-122) Pr 19.2 12 0.00088 22.0 0.2 13 19-31 45-57 (57)
6 d2rfra1 d.17.4.28 (A:1-153) Un 19.2 10 0.00075 22.5 -0.2 11 23-33 128-138 (153)
7 d1crba_ b.60.1.2 (A:) Cellular 18.7 12 0.0009 23.4 0.2 12 22-33 4-15 (134)
8 d1tf5a2 a.172.1.1 (A:571-780) 17.5 38 0.0028 21.8 2.5 21 65-85 28-48 (210)
9 d1w6ka2 a.102.4.2 (A:100-378) 17.3 45 0.0033 23.8 3.0 32 64-95 218-255 (279)
10 d3d9ra1 d.17.4.27 (A:3-134) Un 17.2 13 0.00091 21.0 -0.1 9 23-31 117-125 (132)
No 1
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.82 E-value=1.3 Score=26.60 Aligned_cols=13 Identities=15% Similarity=0.590 Sum_probs=11.4
Q ss_pred cccc--chhhccccc
Q 046816 19 QFYL--DEKWKLSKK 31 (96)
Q Consensus 19 ~~y~--DeKWKlSKK 31 (96)
|||+ ||+|+.+||
T Consensus 26 eyY~dkdGe~~PgkK 40 (66)
T d1pcfa_ 26 EYWMDPEGEMKPGRK 40 (66)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEECCCCCCCCCCC
Confidence 6886 599999999
No 2
>d1ggla_ b.60.1.2 (A:) Cellular retinol-binding protein III {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.08 E-value=6.4 Score=24.58 Aligned_cols=15 Identities=20% Similarity=0.623 Sum_probs=11.9
Q ss_pred CCccccchhhccccccC
Q 046816 17 PPQFYLDEKWKLSKKEG 33 (96)
Q Consensus 17 ~p~~y~DeKWKlSKKeg 33 (96)
||. |.|+|||.+-|.
T Consensus 1 p~~--f~Gtwkl~~sEN 15 (134)
T d1ggla_ 1 PPN--LTGYYRFVSQKN 15 (134)
T ss_dssp CCS--CCEEEEEEEEEC
T ss_pred CCC--cCEEEEEEeccC
Confidence 566 789999998763
No 3
>d1fada_ a.77.1.2 (A:) FADD (Mort1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.30 E-value=13 Score=21.41 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhcc
Q 046816 79 IMRRCVTMLICWRD 92 (96)
Q Consensus 79 IiRRCv~MLLCWhd 92 (96)
+-.+|..||..|.+
T Consensus 49 ~~e~~~~mL~~W~~ 62 (95)
T d1fada_ 49 LSERVRESLKVWKN 62 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44679999999964
No 4
>d1kqwa_ b.60.1.2 (A:) Cellular retinol-binding protein II (CRBP) {Zebrafish (Danio rerio) [TaxId: 7955]}
Probab=20.57 E-value=10 Score=23.58 Aligned_cols=15 Identities=13% Similarity=0.720 Sum_probs=11.3
Q ss_pred CCccccchhhccccccC
Q 046816 17 PPQFYLDEKWKLSKKEG 33 (96)
Q Consensus 17 ~p~~y~DeKWKlSKKeg 33 (96)
|+. |.|+|||.+-|.
T Consensus 1 p~~--f~Gtwkl~~sEN 15 (134)
T d1kqwa_ 1 PAD--FNGTWEMLSNDN 15 (134)
T ss_dssp CCC--CCEEEEEEEEES
T ss_pred CCC--cCEEEEEEeccC
Confidence 555 789999987663
No 5
>d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=19.20 E-value=12 Score=21.97 Aligned_cols=13 Identities=54% Similarity=1.025 Sum_probs=10.1
Q ss_pred ccccchhhccccc
Q 046816 19 QFYLDEKWKLSKK 31 (96)
Q Consensus 19 ~~y~DeKWKlSKK 31 (96)
-+|.|++|...+|
T Consensus 45 a~y~~g~Wve~~K 57 (57)
T d1yuaa2 45 AFYVDGKWVEGKK 57 (57)
T ss_dssp EEBCSSCBCCCCC
T ss_pred EEeeCCEEEeccC
Confidence 3799999986654
No 6
>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722 {Novosphingobium aromaticivorans [TaxId: 48935]}
Probab=19.16 E-value=10 Score=22.49 Aligned_cols=11 Identities=18% Similarity=0.676 Sum_probs=8.9
Q ss_pred chhhccccccC
Q 046816 23 DEKWKLSKKEG 33 (96)
Q Consensus 23 DeKWKlSKKeg 33 (96)
||+||+++...
T Consensus 128 ~g~WkI~~r~~ 138 (153)
T d2rfra1 128 PAGWRAVRREN 138 (153)
T ss_dssp TTEEEEEEEEE
T ss_pred CCEEEEEEEEE
Confidence 79999998743
No 7
>d1crba_ b.60.1.2 (A:) Cellular retinol-binding protein II (CRBP) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.74 E-value=12 Score=23.36 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=9.9
Q ss_pred cchhhccccccC
Q 046816 22 LDEKWKLSKKEG 33 (96)
Q Consensus 22 ~DeKWKlSKKeg 33 (96)
|.|+|||.+-|.
T Consensus 4 f~G~wkl~~sEN 15 (134)
T d1crba_ 4 FNGYWKMLSNEN 15 (134)
T ss_dssp CCEEEEEEEEES
T ss_pred ccEEEEEEeccC
Confidence 789999998764
No 8
>d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of SecA {Bacillus subtilis [TaxId: 1423]}
Probab=17.51 E-value=38 Score=21.77 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHH
Q 046816 65 KCARLVREQRARFYIMRRCVT 85 (96)
Q Consensus 65 rc~~~vKEQRaRlYIiRRCv~ 85 (96)
..-.++.+||.-+|-.|+-|.
T Consensus 28 eyDdVln~QR~~IY~~R~~iL 48 (210)
T d1tf5a2 28 QYDDVLRQQREVIYKQRFEVI 48 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999875
No 9
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.30 E-value=45 Score=23.78 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=20.8
Q ss_pred hHHHHHHH-hhhhhhHH----HHHHHHHHHhh-cccCC
Q 046816 64 RKCARLVR-EQRARFYI----MRRCVTMLICW-RDYND 95 (96)
Q Consensus 64 ~rc~~~vK-EQRaRlYI----iRRCv~MLLCW-hd~~d 95 (96)
++|.+.+. ||+..=|| |-..+-||.|| .|.-|
T Consensus 218 ~~a~~~i~~ede~t~~~glg~i~~~lnml~~~~~e~p~ 255 (279)
T d1w6ka2 218 QKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPA 255 (279)
T ss_dssp HHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHccCCC
Confidence 44555554 67776555 66788999999 44333
No 10
>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]}
Probab=17.19 E-value=13 Score=21.01 Aligned_cols=9 Identities=11% Similarity=0.571 Sum_probs=6.9
Q ss_pred chhhccccc
Q 046816 23 DEKWKLSKK 31 (96)
Q Consensus 23 DeKWKlSKK 31 (96)
||+||+.+-
T Consensus 117 dG~Wki~~~ 125 (132)
T d3d9ra1 117 TGSWQTARY 125 (132)
T ss_dssp TSCEEEEEE
T ss_pred CCcEEEEEE
Confidence 688999753
Done!