BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046819
         (80 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
          Protein From Arabidopsis Thaliana At3g01520 With Amp
          Bound
 pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
          Protein From Arabidopsis Thaliana At3g01520 With Amp
          Bound
 pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
          Protein From Arabidopsis Thaliana At3g01520 With Amp
          Bound
 pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
          Protein From Arabidopsis Thaliana At3g01520 With Amp
          Bound
 pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
          Protein From Arabidopsis Thaliana At3g01520 With Amp
          Bound
 pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
          Protein From Arabidopsis Thaliana At3g01520 With Amp
          Bound
          Length = 175

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 47/56 (83%)

Query: 4  EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED 59
          EPT++ VAVN STIK YP+ SIS + AFEW+++KI+RSNTS FK+L LHVQV DED
Sbjct: 4  EPTKVXVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDED 59


>pdb|1PV5|A Chain A, Structure Of Protein Of Unknown Function Ywqg From
           Bacillus Subtilis
          Length = 264

 Score = 26.6 bits (57), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 13/75 (17%)

Query: 3   GEPTRIIVAVNESTI---KGYPHASISSRGAFEWSVQKII-------RSNTSGFKLLFLH 52
           G+P +++  +N S I    GYP + I     F  SV   +       R     F++++  
Sbjct: 60  GQPXKLLAQINFSHIPQLDGYPSSGILQ---FYISVHDDVYGLNFDDRCEQKNFRVIYFE 116

Query: 53  VQVPDEDEIFASFDF 67
             V ++DE+ + F F
Sbjct: 117 NIVENDDELVSDFSF 131


>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
           Lactobacillus Plantarum
          Length = 324

 Score = 26.2 bits (56), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 9   IVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLL 49
           ++A   S ++GY  A ++ RGA +W++  +  S  +G +LL
Sbjct: 102 VLAAMLSVVRGYHAAWLNQRGARQWAL-PMTTSTLTGQQLL 141


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,389,348
Number of Sequences: 62578
Number of extensions: 77619
Number of successful extensions: 145
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 5
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)