BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046819
         (80 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
          GN=At3g01520 PE=1 SV=2
          Length = 175

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 49/59 (83%)

Query: 1  MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED 59
          M  EPT+++VAVN STIK YP+ SIS + AFEW+++KI+RSNTS FK+L LHVQV DED
Sbjct: 1  MGSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDED 59


>sp|P30269|AMY_BUTFI Alpha-amylase OS=Butyrivibrio fibrisolvens GN=amyA PE=3 SV=1
          Length = 976

 Score = 34.7 bits (78), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 10  VAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDEIFASFDFGK 69
           VAVNE +  G+  A + + G  E +   +I +N +G + + +    PD  +I+ + D  K
Sbjct: 739 VAVNEGS--GWYRADVKTTG--EITAFNLIFNNGNGIQTVNVEGITPDSKDIYLAVDAEK 794

Query: 70  ENGILVLNEY 79
            NG L++N Y
Sbjct: 795 SNGQLIVNRY 804


>sp|P56542|DNS2A_MOUSE Deoxyribonuclease-2-alpha OS=Mus musculus GN=Dnase2 PE=2 SV=1
          Length = 353

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 26  SSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDEIFASFDFGKENGILVLNE 78
           SS GA   S+Q + R N+S    L  + Q P       S   G   G+L+L++
Sbjct: 72  SSEGAVGRSLQPLYRKNSSQLAFLLYNDQPPKSSSARDSTGHGHTKGVLLLDQ 124


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,655,644
Number of Sequences: 539616
Number of extensions: 953485
Number of successful extensions: 1652
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1649
Number of HSP's gapped (non-prelim): 3
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)