Query 046819
Match_columns 80
No_of_seqs 69 out of 71
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 07:50:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gm3_A Unknown protein; AT3G01 98.1 5E-06 1.7E-10 53.3 5.7 54 4-57 4-57 (175)
2 3fdx_A Putative filament prote 97.9 1.6E-05 5.6E-10 48.7 4.5 42 5-58 1-44 (143)
3 3idf_A USP-like protein; unive 97.9 2.1E-05 7.2E-10 48.1 4.7 42 6-59 2-44 (138)
4 3tnj_A Universal stress protei 97.8 2.5E-05 8.6E-10 48.4 4.8 41 5-57 6-46 (150)
5 3hgm_A Universal stress protei 97.8 2E-05 6.9E-10 48.3 4.2 41 6-58 3-43 (147)
6 3s3t_A Nucleotide-binding prot 97.8 2.6E-05 8.9E-10 47.9 4.3 42 5-58 5-46 (146)
7 1mjh_A Protein (ATP-binding do 97.8 3.3E-05 1.1E-09 48.6 4.4 42 4-57 4-45 (162)
8 2z08_A Universal stress protei 97.7 4.5E-05 1.5E-09 46.9 4.3 40 6-57 3-42 (137)
9 1jmv_A USPA, universal stress 97.7 6.7E-05 2.3E-09 46.0 5.0 39 6-56 3-41 (141)
10 1q77_A Hypothetical protein AQ 97.7 8.3E-05 2.8E-09 45.6 5.3 39 5-55 4-43 (138)
11 2dum_A Hypothetical protein PH 97.7 6.2E-05 2.1E-09 47.8 4.7 42 4-57 4-45 (170)
12 3fg9_A Protein of universal st 97.5 9.5E-05 3.2E-09 46.3 4.2 42 5-58 15-58 (156)
13 1tq8_A Hypothetical protein RV 97.4 0.00014 4.7E-09 47.1 3.5 40 5-57 17-58 (163)
14 3dlo_A Universal stress protei 97.4 0.00016 5.6E-09 46.4 3.8 41 5-57 24-65 (155)
15 3ab8_A Putative uncharacterize 97.1 0.00034 1.2E-08 47.2 3.3 40 6-57 1-40 (268)
16 3cis_A Uncharacterized protein 97.0 0.00055 1.9E-08 47.6 3.8 41 5-57 19-59 (309)
17 3loq_A Universal stress protei 97.0 0.0006 2.1E-08 46.9 3.5 42 5-58 22-63 (294)
18 3mt0_A Uncharacterized protein 96.8 0.0021 7.1E-08 44.2 5.4 42 5-58 134-182 (290)
19 3olq_A Universal stress protei 96.7 0.0026 9E-08 43.7 4.8 41 5-57 7-47 (319)
20 3mt0_A Uncharacterized protein 96.6 0.0021 7.1E-08 44.2 4.2 40 5-56 7-46 (290)
21 3cis_A Uncharacterized protein 96.5 0.0024 8.2E-08 44.3 3.8 41 5-57 171-211 (309)
22 3loq_A Universal stress protei 96.2 0.0051 1.8E-07 42.2 4.2 42 5-58 170-211 (294)
23 3ab8_A Putative uncharacterize 95.9 0.0079 2.7E-07 40.4 3.8 41 5-57 154-194 (268)
24 3olq_A Universal stress protei 95.4 0.026 8.8E-07 38.7 4.9 44 5-58 156-206 (319)
25 1ou8_A Stringent starvation pr 49.7 25 0.00086 23.6 4.3 40 28-77 14-53 (111)
26 1fiu_A Type II restriction enz 40.0 2.9 9.8E-05 32.5 -1.8 37 18-58 175-226 (286)
27 1yfn_A Stringent starvation pr 37.0 50 0.0017 22.3 4.2 39 29-77 16-54 (118)
28 1nmo_A Hypothetical protein YB 34.3 49 0.0017 23.4 4.0 31 4-53 34-64 (247)
29 1ou9_A Stringent starvation pr 33.4 60 0.0021 22.3 4.2 40 28-77 14-53 (129)
30 2yyb_A Hypothetical protein TT 31.9 47 0.0016 23.4 3.6 31 4-53 35-65 (242)
31 1fsg_A HGPRTASE, hypoxanthine- 31.9 1.1E+02 0.0037 21.2 5.4 48 12-68 148-202 (233)
32 2jbh_A Phosphoribosyltransfera 31.2 1.2E+02 0.004 20.8 5.5 50 11-69 139-195 (225)
33 1tc1_A Protein (hypoxanthine p 27.9 1.3E+02 0.0045 20.7 5.3 48 12-68 109-163 (220)
34 2fyw_A Conserved hypothetical 27.9 52 0.0018 23.4 3.3 30 4-52 37-66 (267)
35 1vdm_A Purine phosphoribosyltr 25.7 1.2E+02 0.0042 18.7 4.8 32 26-57 94-125 (153)
36 2xbu_A Hypoxanthine-guanine ph 23.4 1.4E+02 0.0047 20.6 4.7 30 26-55 114-160 (221)
37 1z9d_A Uridylate kinase, UK, U 23.2 1.4E+02 0.0048 20.5 4.7 48 5-53 7-54 (252)
38 3acd_A Hypoxanthine-guanine ph 23.2 1.2E+02 0.0042 20.4 4.3 43 26-68 106-155 (181)
39 2geb_A Hypoxanthine-guanine ph 22.8 1.6E+02 0.0053 19.3 4.7 53 6-68 99-158 (185)
40 3pdk_A Phosphoglucosamine muta 21.7 1.6E+02 0.0056 22.5 5.2 62 5-78 61-135 (469)
41 3fj2_A Monooxygenase-like prot 21.6 87 0.003 21.8 3.4 19 61-79 74-92 (186)
42 1wqa_A Phospho-sugar mutase; a 20.2 1.6E+02 0.0055 22.1 4.8 62 5-78 41-115 (455)
No 1
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.13 E-value=5e-06 Score=53.33 Aligned_cols=54 Identities=67% Similarity=1.070 Sum_probs=43.1
Q ss_pred CCeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819 4 EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD 57 (80)
Q Consensus 4 e~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~ 57 (80)
..++|||+||.|+....|+++..|..||+|+++.+.+......+|.+|||.++.
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~ 57 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVD 57 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC--
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecc
Confidence 468999999999989999999999999999999875432123479999997654
No 2
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=97.89 E-value=1.6e-05 Score=48.71 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=33.7
Q ss_pred CeEEEEEEeCCccCCCCCCCcc--hHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819 5 PTRIIVAVNESTIKGYPHASIS--SRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE 58 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~--S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~ 58 (80)
+++|+|+||.|+ . |..|++|+++-.-..+ -+|.+|||.++..
T Consensus 1 ~k~ILv~vD~s~---------~~~s~~al~~a~~la~~~~---a~l~ll~v~~~~~ 44 (143)
T 3fdx_A 1 SNAILVPIDISD---------KEFTERIISHVESEARIDD---AEVHFLTVIPSLP 44 (143)
T ss_dssp CCEEEEECCTTC---------SSCCTTHHHHHHHHHHHHT---CEEEEEEEECC--
T ss_pred CCEEEEEecCCh---------HhhHHHHHHHHHHHHHhcC---CeEEEEEEecCCc
Confidence 478999999999 9 9999999987654434 2799999988763
No 3
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=97.87 E-value=2.1e-05 Score=48.12 Aligned_cols=42 Identities=12% Similarity=0.264 Sum_probs=35.0
Q ss_pred eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhh-hccCCCcceEEEEEeeCCCCC
Q 046819 6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKI-IRSNTSGFKLLFLHVQVPDED 59 (80)
Q Consensus 6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l-~~~~~~~fkLvlLHvqpp~~~ 59 (80)
++|+|++|.|+ .|..|++|+++-. .+.+ -+|.+|||.++...
T Consensus 2 ~~ILv~~D~s~---------~s~~al~~a~~la~~~~~---a~l~ll~v~~~~~~ 44 (138)
T 3idf_A 2 KKLLFAIDDTE---------ACERAAQYILDMFGKDAD---CTLTLIHVKPEFML 44 (138)
T ss_dssp EEEEEECCSSH---------HHHHHHHHHHHHHTTCTT---EEEEEEEEECCCCC
T ss_pred ceEEEEeCCCH---------HHHHHHHHHHHHhccCCC---CEEEEEEEecCCCc
Confidence 68999999999 9999999999976 4333 37999999887743
No 4
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=97.84 E-value=2.5e-05 Score=48.39 Aligned_cols=41 Identities=17% Similarity=0.099 Sum_probs=33.2
Q ss_pred CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819 5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD 57 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~ 57 (80)
-++|+|++|.|+ .|..|++|+++-.-+.+ -+|.+|||.++.
T Consensus 6 ~~~ILv~vD~s~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~~ 46 (150)
T 3tnj_A 6 YHHILLAVDFSS---------EDSQVVQKVRNLASQIG---ARLSLIHVLDNI 46 (150)
T ss_dssp CSEEEEECCCST---------THHHHHHHHHHHHHHHT---CEEEEEEEEC--
T ss_pred cceEEEEeCCCH---------HHHHHHHHHHHHHhhcC---CEEEEEEEEcCc
Confidence 578999999999 99999999998655433 279999998765
No 5
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=97.83 E-value=2e-05 Score=48.31 Aligned_cols=41 Identities=27% Similarity=0.223 Sum_probs=34.6
Q ss_pred eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819 6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE 58 (80)
Q Consensus 6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~ 58 (80)
++|+|++|.|+ .|..|++|+++-.-+.+ -+|.+|||.++..
T Consensus 3 ~~ILv~vD~s~---------~s~~al~~A~~la~~~~---a~l~ll~v~~~~~ 43 (147)
T 3hgm_A 3 NRIMVPVDGSK---------GAVKALEKGVGLQQLTG---AELYILCVFKHHS 43 (147)
T ss_dssp SEEEEECCSBH---------HHHHHHHHHHHHHHHHC---CEEEEEEEECCHH
T ss_pred ceEEEEeCCCH---------HHHHHHHHHHHHHHhcC---CEEEEEEEecCcc
Confidence 58999999999 99999999998655443 2799999988764
No 6
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=97.80 E-value=2.6e-05 Score=47.94 Aligned_cols=42 Identities=29% Similarity=0.260 Sum_probs=35.0
Q ss_pred CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819 5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE 58 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~ 58 (80)
-++|+|++|.|+ .|..|++|+++-.-+.+ -+|.+|||.++..
T Consensus 5 ~~~ILv~~D~s~---------~s~~al~~A~~la~~~~---a~l~ll~v~~~~~ 46 (146)
T 3s3t_A 5 YTNILVPVDSSD---------AAQAAFTEAVNIAQRHQ---ANLTALYVVDDSA 46 (146)
T ss_dssp CCEEEEECCSSH---------HHHHHHHHHHHHHHHHT---CEEEEEEEEECCC
T ss_pred cceEEEEcCCCH---------HHHHHHHHHHHHHHhcC---CEEEEEEEecCcc
Confidence 478999999999 99999999998665433 2799999987764
No 7
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=97.76 E-value=3.3e-05 Score=48.58 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=34.0
Q ss_pred CCeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819 4 EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD 57 (80)
Q Consensus 4 e~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~ 57 (80)
..++|+|+||.|+ .|..|++|+++-.-+.+ -+|.+|||.++.
T Consensus 4 ~~~~ILv~vD~s~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~~ 45 (162)
T 1mjh_A 4 MYKKILYPTDFSE---------TAEIALKHVKAFKTLKA---EEVILLHVIDER 45 (162)
T ss_dssp CCCEEEEECCSCH---------HHHHHHHHHHHTCCSSC---CEEEEEEEEEGG
T ss_pred ccceEEEEeCCCH---------HHHHHHHHHHHHHhhcC---CeEEEEEEecCc
Confidence 3578999999999 99999999998644322 379999997654
No 8
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=97.70 E-value=4.5e-05 Score=46.89 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=33.0
Q ss_pred eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819 6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD 57 (80)
Q Consensus 6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~ 57 (80)
++|+|++|.|+ .|..|++|+++-.-+.+ -+|.+|||.++.
T Consensus 3 ~~ILv~~D~s~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~~ 42 (137)
T 2z08_A 3 KTILLAYDGSE---------HARRAAEVAKAEAEAHG---ARLIVVHAYEPV 42 (137)
T ss_dssp SEEEEECCSSH---------HHHHHHHHHHHHHHHHT---CEEEEEEEECC-
T ss_pred ceEEEEeCCCH---------HHHHHHHHHHHHHhhcC---CEEEEEEEecCC
Confidence 68999999999 99999999998655433 279999998754
No 9
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.69 E-value=6.7e-05 Score=45.99 Aligned_cols=39 Identities=33% Similarity=0.329 Sum_probs=32.4
Q ss_pred eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCC
Q 046819 6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVP 56 (80)
Q Consensus 6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp 56 (80)
++|+|++|.|+ .|..|++|++.-.-+.+ -+|.+|||.++
T Consensus 3 ~~ILv~~D~s~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~ 41 (141)
T 1jmv_A 3 KHILVAVDLSE---------ESPILLKKAVGIAKRHD---AKLSIIHVDVN 41 (141)
T ss_dssp SEEEEEECCST---------THHHHHHHHHHHHHHHT---CEEEEEEEEEC
T ss_pred ceEEEEecCch---------hhHHHHHHHHHHHHhcC---CEEEEEEEecC
Confidence 58999999999 99999999998655433 27999999854
No 10
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.68 E-value=8.3e-05 Score=45.58 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=32.5
Q ss_pred CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEee-C
Q 046819 5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQ-V 55 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvq-p 55 (80)
-++|+|++|.|+ .|..|++|+++-.-+.+ -+|.+|||. +
T Consensus 4 ~~~ILv~~D~s~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~ 43 (138)
T 1q77_A 4 MKVLLVLTDAYS---------DCEKAITYAVNFSEKLG---AELDILAVLED 43 (138)
T ss_dssp CEEEEEEESTTC---------CCHHHHHHHHHHHTTTC---CEEEEEEECHH
T ss_pred ccEEEEEccCCH---------hHHHHHHHHHHHHHHcC---CeEEEEEEecc
Confidence 478999999999 99999999997654323 379999998 5
No 11
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=97.66 E-value=6.2e-05 Score=47.82 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=34.2
Q ss_pred CCeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819 4 EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD 57 (80)
Q Consensus 4 e~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~ 57 (80)
.-++|+|++|.|+ .|..|++|+++-.-+.+ -+|.+|||.++.
T Consensus 4 m~~~ILv~vD~s~---------~s~~al~~A~~la~~~~---a~l~ll~v~~~~ 45 (170)
T 2dum_A 4 MFRKVLFPTDFSE---------GAYRAVEVFEKRNKMEV---GEVILLHVIDEG 45 (170)
T ss_dssp CCSEEEEECCSSH---------HHHHHHHHHHHHCCSCC---SEEEEEEEEETT
T ss_pred ccceEEEEecCCH---------HHHHHHHHHHHHHHhcC---CEEEEEEEecCc
Confidence 3578999999999 99999999998654322 379999997665
No 12
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=97.54 E-value=9.5e-05 Score=46.34 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=33.8
Q ss_pred CeEEEEEEe--CCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819 5 PTRIIVAVN--ESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE 58 (80)
Q Consensus 5 ~~rvmVaVD--eSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~ 58 (80)
-++|+|++| .|+ .|..|++|+++-.-..+ -+|.+|||.++..
T Consensus 15 ~~~ILv~vD~~~s~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~~~ 58 (156)
T 3fg9_A 15 YRRILLTVDEDDNT---------SSERAFRYATTLAHDYD---VPLGICSVLESED 58 (156)
T ss_dssp CC-EEEECCSCCCH---------HHHHHHHHHHHHHHHHT---CCEEEEEEECCCC
T ss_pred CceEEEEECCCCCH---------HHHHHHHHHHHHHHhcC---CEEEEEEEEeCCC
Confidence 478999999 999 99999999998554433 2799999988764
No 13
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=97.38 E-value=0.00014 Score=47.10 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=31.0
Q ss_pred CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEE--EeeCCC
Q 046819 5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFL--HVQVPD 57 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlL--Hvqpp~ 57 (80)
.++|+|+||.|+ .|..|++|+++-.- .+ -+|.+| ||.++.
T Consensus 17 ~~~ILv~vD~s~---------~s~~al~~A~~lA~-~~---a~l~ll~a~v~~~~ 58 (163)
T 1tq8_A 17 YKTVVVGTDGSD---------SSMRAVDRAAQIAG-AD---AKLIIASAYLPQHE 58 (163)
T ss_dssp CCEEEEECCSSH---------HHHHHHHHHHHHHT-TT---SEEEEEEECCC---
T ss_pred CCEEEEEcCCCH---------HHHHHHHHHHHHhC-CC---CEEEEEEeeeccCc
Confidence 678999999999 99999999998654 32 379999 775543
No 14
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=97.37 E-value=0.00016 Score=46.41 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=34.0
Q ss_pred CeEEEEEEeC-CccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819 5 PTRIIVAVNE-STIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD 57 (80)
Q Consensus 5 ~~rvmVaVDe-Se~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~ 57 (80)
-++|+|++|. |+ .|..|++|+++-.-..+. +|.+|||.+++
T Consensus 24 ~~~ILv~vD~~s~---------~s~~al~~A~~la~~~~a---~l~llhV~~~~ 65 (155)
T 3dlo_A 24 YMPIVVAVDKKSD---------RAERVLRFAAEEARLRGV---PVYVVHSLPGG 65 (155)
T ss_dssp CCCEEEECCSSSH---------HHHHHHHHHHHHHHHHTC---CEEEEEEECCS
T ss_pred cCeEEEEECCCCH---------HHHHHHHHHHHHHHhcCC---EEEEEEEEcCC
Confidence 4689999999 99 999999999986554332 79999998765
No 15
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.11 E-value=0.00034 Score=47.20 Aligned_cols=40 Identities=25% Similarity=0.220 Sum_probs=32.6
Q ss_pred eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819 6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD 57 (80)
Q Consensus 6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~ 57 (80)
++|+|++|.|+ .|..|++|+++-.-+.+ -+|.+|||.++.
T Consensus 1 k~ILv~vD~s~---------~s~~al~~A~~lA~~~~---a~l~ll~v~~~~ 40 (268)
T 3ab8_A 1 MRILLATDGSP---------QARGAEALAEWLAYKLS---APLTVLFVVDTR 40 (268)
T ss_dssp CCEEEECCSCG---------GGHHHHHHHHHHHHHHT---CCEEEEEEEEHH
T ss_pred CcEEEEcCCCH---------HHHHHHHHHHHHHHHhC---CcEEEEEEeccC
Confidence 47999999999 99999999998655433 279999997654
No 16
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=97.03 E-value=0.00055 Score=47.55 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=34.2
Q ss_pred CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819 5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD 57 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~ 57 (80)
.++|+|++|.|+ .|..|++|++.-..+.+. +|.+|||.++.
T Consensus 19 ~~~ILv~~D~s~---------~s~~al~~A~~lA~~~~a---~l~ll~v~~~~ 59 (309)
T 3cis_A 19 SLGIIVGIDDSP---------AAQVAVRWAARDAELRKI---PLTLVHAVSPE 59 (309)
T ss_dssp TTEEEEECCSSH---------HHHHHHHHHHHHHHHHTC---CEEEEEECCCC
T ss_pred CCeEEEEECCCH---------HHHHHHHHHHHHHHhcCC---cEEEEEEecCc
Confidence 578999999999 999999999987654442 79999998744
No 17
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=96.95 E-value=0.0006 Score=46.87 Aligned_cols=42 Identities=12% Similarity=0.002 Sum_probs=34.2
Q ss_pred CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819 5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE 58 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~ 58 (80)
-++|+|++|.|+ .|..|++|++.-.-+.+ -+|.+|||.++..
T Consensus 22 ~~~ILv~vD~s~---------~s~~al~~A~~lA~~~~---a~l~ll~v~~~~~ 63 (294)
T 3loq_A 22 SNAMLLPTDLSE---------NSFKVLEYLGDFKKVGV---EEIGVLFVINLTK 63 (294)
T ss_dssp TCEEEEECCSCT---------GGGGGGGGHHHHHHTTC---CEEEEECCEECTT
T ss_pred hccEEEecCCCH---------HHHHHHHHHHHHHhhcC---CEEEEEEEecCcc
Confidence 468999999999 99999999998543322 3799999987764
No 18
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=96.84 E-value=0.0021 Score=44.22 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=33.1
Q ss_pred CeEEEEEEeCCccCCCCCCCcc-------hHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819 5 PTRIIVAVNESTIKGYPHASIS-------SRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE 58 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~-------S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~ 58 (80)
.++|+|++|.|+ + |..|++|+++-.-..+ -+|.+|||.++..
T Consensus 134 ~~~Ilva~D~s~---------~~~~~~~~s~~al~~a~~la~~~~---a~l~ll~v~~~~~ 182 (290)
T 3mt0_A 134 GGKILAAVDVGN---------NDGEHRSLHAGIISHAYDIAGLAK---ATLHVISAHPSPM 182 (290)
T ss_dssp TCEEEEEECTTC---------CSHHHHHHHHHHHHHHHHHHHHTT---CEEEEEEEEC---
T ss_pred CCeEEEEECCCC---------cchhhhHHHHHHHHHHHHHHHHcC---CeEEEEEEecCcc
Confidence 579999999999 8 9999999988755433 2799999987653
No 19
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=96.66 E-value=0.0026 Score=43.72 Aligned_cols=41 Identities=10% Similarity=0.091 Sum_probs=33.7
Q ss_pred CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819 5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD 57 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~ 57 (80)
.++|+|++|.|+ .|..|++|++.-.-+.+ -+|.+|||.++.
T Consensus 7 ~k~ILv~~D~s~---------~s~~al~~A~~lA~~~~---a~l~ll~v~~~~ 47 (319)
T 3olq_A 7 YQNLLVVIDPNQ---------DDQPALRRAVYIVQRNG---GRIKAFLPVYDL 47 (319)
T ss_dssp SCEEEEECCTTC---------SCCHHHHHHHHHHHHHC---CEEEEEEEECCG
T ss_pred cceEEEEECCCc---------ccHHHHHHHHHHHHHcC---CeEEEEEEeccc
Confidence 578999999999 99999999998654434 279999997653
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=96.63 E-value=0.0021 Score=44.23 Aligned_cols=40 Identities=13% Similarity=0.018 Sum_probs=33.8
Q ss_pred CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCC
Q 046819 5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVP 56 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp 56 (80)
.++|+|++|.|+ .|..|++|++.-.-+.+ .+|.+||+.+|
T Consensus 7 ~~~ILv~~D~s~---------~s~~al~~A~~la~~~~---a~l~ll~v~~~ 46 (290)
T 3mt0_A 7 IRSILVVIEPDQ---------LEGLALKRAQLIAGVTQ---SHLHLLVCEKR 46 (290)
T ss_dssp CCEEEEECCSSC---------SCCHHHHHHHHHHHHHC---CEEEEEEECSS
T ss_pred hceEEEEeCCCc---------cchHHHHHHHHHHHhcC---CeEEEEEeeCc
Confidence 578999999999 99999999998655434 27999999875
No 21
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=96.50 E-value=0.0024 Score=44.29 Aligned_cols=41 Identities=24% Similarity=0.257 Sum_probs=33.3
Q ss_pred CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819 5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD 57 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~ 57 (80)
.++||||+|.|+ .|..|++|+++-.-+.+ -+|.+|||.++.
T Consensus 171 ~~~Ilv~~D~s~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~~ 211 (309)
T 3cis_A 171 QAPVLVGVDGSS---------ASELATAIAFDEASRRN---VDLVALHAWSDV 211 (309)
T ss_dssp CCCEEEECCSSH---------HHHHHHHHHHHHHHHTT---CCEEEEEESCSS
T ss_pred CCeEEEEeCCCh---------HHHHHHHHHHHHHHhcC---CEEEEEEEeecc
Confidence 468999999999 99999999997654333 269999997654
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=96.23 E-value=0.0051 Score=42.19 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=34.8
Q ss_pred CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819 5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE 58 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~ 58 (80)
.++|+||+|.|+ .|..|++|+++-.-..+ -+|.+|||.++..
T Consensus 170 ~~~Ilv~~d~s~---------~s~~al~~a~~la~~~~---~~l~ll~v~~~~~ 211 (294)
T 3loq_A 170 FDRVLVAYDFSK---------WADRALEYAKFVVKKTG---GELHIIHVSEDGD 211 (294)
T ss_dssp TSEEEEECCSSH---------HHHHHHHHHHHHHHHHT---CEEEEEEECSSSC
T ss_pred CCEEEEEECCCH---------HHHHHHHHHHHHhhhcC---CEEEEEEEccCch
Confidence 579999999999 99999999997654433 2799999987763
No 23
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=95.88 E-value=0.0079 Score=40.45 Aligned_cols=41 Identities=10% Similarity=-0.030 Sum_probs=32.5
Q ss_pred CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819 5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD 57 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~ 57 (80)
.++|+|++|.|+ .|..|++|+..-....+. +|.+|||.++.
T Consensus 154 ~~~ilv~~d~s~---------~~~~al~~a~~la~~~~a---~l~ll~v~~~~ 194 (268)
T 3ab8_A 154 LEGALLGYDASE---------SAVRALHALAPLARALGL---GVRVVSVHEDP 194 (268)
T ss_dssp CCEEEEECCSCH---------HHHHHHHHHHHHHHHHTC---CEEEEEECSSH
T ss_pred CCEEEEEECCCH---------HHHHHHHHHHHhhhcCCC---EEEEEEEcCcH
Confidence 468999999999 999999998764433332 59999998764
No 24
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=95.38 E-value=0.026 Score=38.75 Aligned_cols=44 Identities=18% Similarity=0.054 Sum_probs=33.7
Q ss_pred CeEEEEEEeCCccCCCCCCCcch-------HHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819 5 PTRIIVAVNESTIKGYPHASISS-------RGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE 58 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S-------~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~ 58 (80)
.++|+||+|.|+ ++ ..|++|++.-.....++ -+|.+|||.++..
T Consensus 156 ~~~Ilva~D~s~---------~~~~~~~~s~~al~~a~~la~~~~~~-a~l~ll~v~~~~~ 206 (319)
T 3olq_A 156 YGTIVVAANLSN---------EESYHDALNLKLIELTNDLSHRIQKD-PDVHLLSAYPVAP 206 (319)
T ss_dssp TCEEEEECCCSC---------CSTHHHHHHHHHHHHHHHHHHHHCSS-CCEEEEEEECCCS
T ss_pred CCeEEEEECCCC---------cchhHHHHHHHHHHHHHHHHHhccCC-CeEEEEEeecCcc
Confidence 579999999999 74 99999998755543112 2799999987764
No 25
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=49.70 E-value=25 Score=23.59 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=23.4
Q ss_pred HHHHHHHhhhhhccCCCcceEEEEEeeCCCCCceeecCCcccccceEEee
Q 046819 28 RGAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDEIFASFDFGKENGILVLN 77 (80)
Q Consensus 28 ~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~~s~yAspd~~~~~~~~~~~ 77 (80)
+...+|++||=++ + .| ++-+..+. --=|..|-+||-+|||
T Consensus 14 RA~yeWi~DN~~T----P-~l-~Vda~~~~----v~VP~~~v~dGqIvLN 53 (111)
T 1ou8_A 14 RAYYDWLVDNSFT----P-YL-VVDATYLG----VNVPVEYVKDGQIVLN 53 (111)
T ss_dssp HHHHHHHHHTTCC----E-EE-EEETTSTT----CBCCGGGCBTTEEEEE
T ss_pred HHHHHHHHhCCCc----c-eE-EEEcCCCC----CcCCHHHhcCCEEEEE
Confidence 3457899999553 2 23 33333222 1235566678888887
No 26
>1fiu_A Type II restriction enzyme ngomi; protein-DNA complex, double helix, restriction endonuclease, restriction-modifiction systems, hydrolase; HET: DNA; 1.60A {Neisseria gonorrhoeae} SCOP: c.52.1.10 PDB: 4abt_A
Probab=40.04 E-value=2.9 Score=32.47 Aligned_cols=37 Identities=22% Similarity=0.517 Sum_probs=26.3
Q ss_pred CCCC--CCCcchHHHHHHHhh------------hhhccCC-CcceEEEEEeeCCCC
Q 046819 18 KGYP--HASISSRGAFEWSVQ------------KIIRSNT-SGFKLLFLHVQVPDE 58 (80)
Q Consensus 18 kgyp--~~si~S~~AleWtL~------------~l~~~~~-~~fkLvlLHvqpp~~ 58 (80)
.|+| |+||+|+ ||+. ||+|+-. ..-++|.|.+.|.+.
T Consensus 175 ~~~piLHAsiSCK----WTiRSDRaQN~RsEaLNLIRnRKGr~PHIvvVTaEPlPS 226 (286)
T 1fiu_A 175 GNMPLLHASISCK----WTIRSDRAQNARSEGLNLVRNRKGRLPHIVVVTAEPTPS 226 (286)
T ss_dssp SCCCEEEEEEEEE----SSCCTTGGGHHHHHHHHHHHHCSSSCCEEEEEECCCCHH
T ss_pred CCCCceeEEEEEe----eEeechhhhhhHHHHHHHHHhccCCCCeEEEEeCCCChH
Confidence 4667 8999997 6653 6776522 113899999999884
No 27
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=36.98 E-value=50 Score=22.34 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=22.6
Q ss_pred HHHHHHhhhhhccCCCcceEEEEEeeCCCCCceeecCCcccccceEEee
Q 046819 29 GAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDEIFASFDFGKENGILVLN 77 (80)
Q Consensus 29 ~AleWtL~~l~~~~~~~fkLvlLHvqpp~~~s~yAspd~~~~~~~~~~~ 77 (80)
...+|++||=++| +| ++-+..+. --=|..|-+||-+|||
T Consensus 16 A~yeWi~DN~~TP-----~l-~Vda~~~~----v~VP~~~v~dGqIVLN 54 (118)
T 1yfn_A 16 AFYEWLLDNQLTP-----HL-VVDVTLPG----VQVPMEYARDGQIVLN 54 (118)
T ss_dssp HHHHHHHHTTCCE-----EE-EEETTSTT----CBSCGGGCBTTEEEEE
T ss_pred HHHHHHHcCCCcc-----eE-EEEcCCCC----ccCCHHHhcCCEEEEE
Confidence 3457999996632 23 33333222 1235566678888887
No 28
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=34.29 E-value=49 Score=23.36 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=22.9
Q ss_pred CCeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEe
Q 046819 4 EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHV 53 (80)
Q Consensus 4 e~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHv 53 (80)
+-+||++|+|-++ ..+++++++ + ..|+|.|=
T Consensus 34 ~V~~I~~~lD~t~------------~vi~eAi~~----~---adlIitHH 64 (247)
T 1nmo_A 34 TVQKIVTGVTASQ------------ALLDEAVRL----G---ADAVIVHH 64 (247)
T ss_dssp BCCEEEEEEECCH------------HHHHHHHHT----T---CSEEEEEE
T ss_pred ccCEEEEEEcCCH------------HHHHHHHhC----C---CCEEEECC
Confidence 4689999999988 457777665 2 25888884
No 29
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=33.36 E-value=60 Score=22.32 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=23.3
Q ss_pred HHHHHHHhhhhhccCCCcceEEEEEeeCCCCCceeecCCcccccceEEee
Q 046819 28 RGAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDEIFASFDFGKENGILVLN 77 (80)
Q Consensus 28 ~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~~s~yAspd~~~~~~~~~~~ 77 (80)
+...+|++||=++ + .| ++-+-.+. --=|..|-+||-+|||
T Consensus 14 RA~yeWi~DN~~T----P-~L-~Vda~~~~----v~VP~~~v~dGqIVLN 53 (129)
T 1ou9_A 14 RAYYDWLVDNSFT----P-YL-VVDATYLG----VNVPVEYVKDGQIVLN 53 (129)
T ss_dssp HHHHHHHHHTTCC----E-EE-EEETTSTT----CBSCGGGCBTTEEEEE
T ss_pred HHHHHHHHhCCCc----c-eE-EEEcCCCC----CcCCHHHhcCCEEEEE
Confidence 3457899999553 2 23 33333222 1235566678888887
No 30
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=31.90 E-value=47 Score=23.43 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=22.7
Q ss_pred CCeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEe
Q 046819 4 EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHV 53 (80)
Q Consensus 4 e~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHv 53 (80)
+-+||++|+|-++ ..+++++++ + ..|+|.|=
T Consensus 35 ~V~~I~~alD~t~------------~vi~eAi~~----~---adlIitHH 65 (242)
T 2yyb_A 35 TVRKVGAAVDAGE------------AIFRKALEE----E---VDFLIVHH 65 (242)
T ss_dssp BCCCEEEEEECSH------------HHHHHHHHT----T---CSEEEEEE
T ss_pred ccCEEEEEEcCCH------------HHHHHHHHC----C---CCEEEECC
Confidence 4578999999888 566777765 2 25888883
No 31
>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A* 1qk5_A* 1dbr_A
Probab=31.89 E-value=1.1e+02 Score=21.20 Aligned_cols=48 Identities=13% Similarity=0.055 Sum_probs=32.0
Q ss_pred EeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCC------C-ceeecCCcc
Q 046819 12 VNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE------D-EIFASFDFG 68 (80)
Q Consensus 12 VDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~------~-s~yAspd~~ 68 (80)
||+.= .+-..+.-+++.|...+....+++.+..+|... + .++.-||.|
T Consensus 148 VDDii---------~TG~Tl~~a~~~L~~~ga~~V~vavl~~k~~~~~~~~~~dy~g~~ip~~f 202 (233)
T 1fsg_A 148 VEDIV---------DTGFTLTEFGERLKAVGPKSMRIATLVEKRTDRSNSLKGDFVGFSIEDVW 202 (233)
T ss_dssp EEEEE---------SSSHHHHHHHHHHHTTCCSEEEEEEEEEECCTTCCSCBCSEEEEEECSCC
T ss_pred Ecccc---------CcHHHHHHHHHHHHhcCCCEEEEEEEEECCccccCCCCccEEEEEcCCcc
Confidence 67766 777778888887776666666777777766431 2 555666655
No 32
>2jbh_A Phosphoribosyltransferase domain-containing prote; glycosyltransferase, purine salvage; HET: 5GP; 1.7A {Homo sapiens}
Probab=31.18 E-value=1.2e+02 Score=20.78 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=32.8
Q ss_pred EEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC------CC-ceeecCCccc
Q 046819 11 AVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD------ED-EIFASFDFGK 69 (80)
Q Consensus 11 aVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~------~~-s~yAspd~~~ 69 (80)
=||+.= .+-..+.-+++.|...+....+++.+..+|.. .+ .++.-||.|-
T Consensus 139 lVDDii---------~TG~Tl~~a~~~L~~~ga~~V~va~l~~k~~~~~~~~~~dy~g~~ip~~fv 195 (225)
T 2jbh_A 139 IVEDVV---------GTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDGFRPDYAGFEIPNLFV 195 (225)
T ss_dssp EEEEEE---------SSSHHHHHHHHHHHTTCCSEEEEEEEEEECC-CCSCCCCSEEEEEECSSCC
T ss_pred EEcccc---------CcHHHHHHHHHHHHhcCCCEEEEEEEEECCccccCCCCccEEEEECCCCeE
Confidence 367766 77777888888887666666677777776642 12 5556666553
No 33
>1tc1_A Protein (hypoxanthine phosphoribosyltransferase); transferase,phosphoribosyltransferase, purine salvage, nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A* 1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A*
Probab=27.94 E-value=1.3e+02 Score=20.74 Aligned_cols=48 Identities=8% Similarity=0.035 Sum_probs=31.8
Q ss_pred EeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC------CC-ceeecCCcc
Q 046819 12 VNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD------ED-EIFASFDFG 68 (80)
Q Consensus 12 VDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~------~~-s~yAspd~~ 68 (80)
||+.= .+-..+.-+++.|...+....+++.+..+|.. .+ .++.-||.|
T Consensus 109 VDDii---------~TG~Tl~~a~~~L~~~Ga~~V~v~~l~~k~~~~~~~~~~dy~g~~ip~~f 163 (220)
T 1tc1_A 109 VEDIV---------DTALTLNYLYHMYFTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAF 163 (220)
T ss_dssp EEEEE---------SSCHHHHHHHHHHHTTCCSEEEEEEEEECTTCCSSCCCCSEEEEECCSCE
T ss_pred EeCcc---------CcHHHHHHHHHHHHhcCCCEEEEEEEEECCccCcCCCCCCEEEEECCchh
Confidence 67766 67777888888877666666667777766632 22 566666654
No 34
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=27.87 E-value=52 Score=23.43 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=22.3
Q ss_pred CCeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEE
Q 046819 4 EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLH 52 (80)
Q Consensus 4 e~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLH 52 (80)
+-+||++|+|-++ ..+++++++ + ..|+|.|
T Consensus 37 ~V~~I~~alD~t~------------~vi~eAi~~----g---adlIitH 66 (267)
T 2fyw_A 37 GIQRVMVALDIRE------------ETVAEAIEK----G---VDLIIVK 66 (267)
T ss_dssp BCSEEEEESCCCH------------HHHHHHHHT----T---CSEEEES
T ss_pred ccCEEEEEEcCCH------------HHHHHHHHC----C---CCEEEEC
Confidence 5689999999888 566777765 2 2577777
No 35
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=25.73 E-value=1.2e+02 Score=18.70 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=23.0
Q ss_pred chHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819 26 SSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD 57 (80)
Q Consensus 26 ~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~ 57 (80)
.+-..+.-+.+.|...+......+.+|.++..
T Consensus 94 tTG~Tl~~a~~~L~~~ga~~v~~~~l~~~~~~ 125 (153)
T 1vdm_A 94 DTGKTLEVVIEEVKKLGAKEIKIACLAMKPWT 125 (153)
T ss_dssp SSCHHHHHHHHHHHTTTBSEEEEEEEEECTTC
T ss_pred CChHHHHHHHHHHHHcCCCEEEEEEEEeCCCC
Confidence 66667777777776556555678888888765
No 36
>2xbu_A Hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage, FLIP pepti; HET: 5GP; 1.80A {Saccharomyces cerevisiae} PDB: 2jkz_A* 2jky_A*
Probab=23.38 E-value=1.4e+02 Score=20.59 Aligned_cols=30 Identities=13% Similarity=0.440 Sum_probs=21.0
Q ss_pred chHHHHHHHhhhhhc--------cCC---------CcceEEEEEeeC
Q 046819 26 SSRGAFEWSVQKIIR--------SNT---------SGFKLLFLHVQV 55 (80)
Q Consensus 26 ~S~~AleWtL~~l~~--------~~~---------~~fkLvlLHvqp 55 (80)
.+-..+..+++.|.. .+. ..+++..||-|+
T Consensus 114 dTG~Tl~aa~~~L~~~ga~~~~~~g~~~~~~~~~~~~v~iavL~~K~ 160 (221)
T 2xbu_A 114 DTRTTLHYALSELEKDAAEQAKAKGIDTEKSPEMKTNFGIFVLHDKQ 160 (221)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHTTCCTTTCGGGSCEEEEEEEEEEC
T ss_pred CcHHHHHHHHHHHHhhcchhhhhcCccccccccCcceEEEEEEEecc
Confidence 666667777777663 233 458899999987
No 37
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=23.19 E-value=1.4e+02 Score=20.48 Aligned_cols=48 Identities=13% Similarity=0.186 Sum_probs=27.6
Q ss_pred CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEe
Q 046819 5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHV 53 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHv 53 (80)
.++++|.+-.|.|.+ +.+.-.....++-..+.+..-.....++||+|-
T Consensus 7 ~k~iViKlGGs~l~~-~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhG 54 (252)
T 1z9d_A 7 YQRILIKLSGEALAG-EKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIG 54 (252)
T ss_dssp CSEEEEEECGGGGTC-SSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCEEEEEEchHHccC-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 368999999998765 222112334444444444422122358999994
No 38
>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*
Probab=23.16 E-value=1.2e+02 Score=20.43 Aligned_cols=43 Identities=7% Similarity=-0.030 Sum_probs=30.7
Q ss_pred chHHHHHHHhhhhhccCCCcceEEEEEeeCCC------CC-ceeecCCcc
Q 046819 26 SSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD------ED-EIFASFDFG 68 (80)
Q Consensus 26 ~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~------~~-s~yAspd~~ 68 (80)
.|-.-++++++.|...++.+.+++.|..++.. .| +++.=||.|
T Consensus 106 dTG~Tl~~~~~~l~~~~p~sv~~avLl~K~~~r~~pi~~DyvG~~ipd~f 155 (181)
T 3acd_A 106 DTGLTLSYLLDYLEARKPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAY 155 (181)
T ss_dssp SSSHHHHHHHHHHHTTCCSEEEEEEEEECGGGCSSCCCCSEEEEECCSCC
T ss_pred cCchhHHHHHHHHhcCCCCEEEEEEEEEcCccccCCCCCCEEEEECCCce
Confidence 67778889999888777777888888775533 23 566666655
No 39
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant, inhibitor design, selectivity; 1.70A {Thermoanaerobacter tengcongensis}
Probab=22.77 E-value=1.6e+02 Score=19.26 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=32.0
Q ss_pred eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC------CC-ceeecCCcc
Q 046819 6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD------ED-EIFASFDFG 68 (80)
Q Consensus 6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~------~~-s~yAspd~~ 68 (80)
++|++ ||+-= .+-..+.-+++.|...+....+++.+..++.. .+ .++.-||.|
T Consensus 99 k~Vll-VDDvi---------~TG~Tl~~a~~~L~~~Ga~~V~~~~l~~~~~~~~~~~~~d~~g~~~p~~f 158 (185)
T 2geb_A 99 KDVLI-VEDII---------DSGLTLAYLRETLLGRKPRSLKICTILDKPERREADVKVDYCGFKIPDKF 158 (185)
T ss_dssp SEEEE-EEEEE---------SSCHHHHHHHHHHHTTCCSEEEEEEEEECGGGCCSCCCCSEEEEECCSCC
T ss_pred CEEEE-ECCcc---------CCHHHHHHHHHHHHhcCCCEEEEEEEEECCCcccCCCCCCEEEEEcCCCc
Confidence 34443 67765 66677777888777666656566666665521 23 555566654
No 40
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=21.66 E-value=1.6e+02 Score=22.51 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=43.0
Q ss_pred CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCCC-------------ceeecCCccccc
Q 046819 5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED-------------EIFASFDFGKEN 71 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~~-------------s~yAspd~~~~~ 71 (80)
.++|+||=|-.. +|. .|.-++-.-+.+ .+.+.+.+-.-|++.. .+-||-|....|
T Consensus 61 ~~~VvIG~D~R~---------ss~-~~~~a~a~gl~s--~Gi~V~~~g~~pTP~l~fav~~~~a~~GImITASHNP~~~N 128 (469)
T 3pdk_A 61 RPKVIIGRDTRI---------SGH-MLEGALVAGLLS--TGAEVMRLGVISTPGVAYLTKALDAQAGVMISASHNPVQDN 128 (469)
T ss_dssp SCEEEEEECSCT---------THH-HHHHHHHHHHHT--TTCEEEEEEECCHHHHHHHHHHHTCSEEEEECCTTSCTTEE
T ss_pred CCeEEEEeCCCC---------CHH-HHHHHHHHHHHH--CCCEEEEeCCCChHHHHHHHHhcCCCeEEEEEeCCCcchhC
Confidence 578999999887 554 555555555543 2357777777776643 345788888889
Q ss_pred ceEEeee
Q 046819 72 GILVLNE 78 (80)
Q Consensus 72 ~~~~~~~ 78 (80)
||-+.++
T Consensus 129 GiK~~~~ 135 (469)
T 3pdk_A 129 GIKFFGS 135 (469)
T ss_dssp EEEEEET
T ss_pred cEEEecC
Confidence 9988764
No 41
>3fj2_A Monooxygenase-like protein; structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS unknown function; HET: MSE; 1.85A {Listeria innocua} PDB: 3fez_A*
Probab=21.56 E-value=87 Score=21.79 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=14.2
Q ss_pred eeecCCcccccceEEeeec
Q 046819 61 IFASFDFGKENGILVLNEY 79 (80)
Q Consensus 61 ~yAspd~~~~~~~~~~~~~ 79 (80)
++++-.+++.+|+.|+|.+
T Consensus 74 VL~s~G~l~~~gfvv~n~~ 92 (186)
T 3fj2_A 74 VLQSSGSLKGFGIVVFEYI 92 (186)
T ss_dssp EEEEEECCCSCSEEEEEEE
T ss_pred EeeccCCcCCCCEEEEEEE
Confidence 4455566778999999975
No 42
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=20.20 E-value=1.6e+02 Score=22.11 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=43.2
Q ss_pred CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCCC-------------ceeecCCccccc
Q 046819 5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED-------------EIFASFDFGKEN 71 (80)
Q Consensus 5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~~-------------s~yAspd~~~~~ 71 (80)
+++|+||=|-.. +|..--+.+..=|...+ .+.+++..-|++.. .+-||-|....|
T Consensus 41 ~~~VvIG~D~R~---------ss~~l~~a~~~gl~~~G---~~V~~~g~~pTP~l~~~v~~~~~~~GimITASHNP~~~N 108 (455)
T 1wqa_A 41 KPLVVVGRDTRV---------SGEMLKEALISGLLSVG---CDVIDVGIAPTPAVQWATKHFNADGGAVITASHNPPEYN 108 (455)
T ss_dssp SCEEEEEECSCT---------THHHHHHHHHHHHHHTT---CEEEEEEECCHHHHHHHHHHTTCSEEEEECCTTSCTTEE
T ss_pred CCeEEEEeCCCc---------CHHHHHHHHHHHHHHcC---CeEEEeCCCChHHHHHHHHhcCCCEEEEEEeCCCChHHC
Confidence 456999999988 77665566555555433 56777776666543 345788888899
Q ss_pred ceEEeee
Q 046819 72 GILVLNE 78 (80)
Q Consensus 72 ~~~~~~~ 78 (80)
||-+.++
T Consensus 109 GiK~~~~ 115 (455)
T 1wqa_A 109 GIKLLEP 115 (455)
T ss_dssp EEEEECT
T ss_pred eEEEEcC
Confidence 9988764
Done!