BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046820
(350 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21
PE=2 SV=1
Length = 435
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/352 (35%), Positives = 188/352 (53%), Gaps = 58/352 (16%)
Query: 23 ETGASLIEKDPVTTTPRNGITYDRVNILIENERIIPVCSVEVLEINSKIKTACETQDQVG 82
E G+ LI++ P TPR +P+ EV EI+ K+ +A D
Sbjct: 100 EKGSPLIQRIP---TPR-----------------VPLMPCEVYEISRKLSSATRRGDYEK 139
Query: 83 CKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVS-VLEEILSTLIL 141
C ++ KIK+ ESE N+ C+ +N+ VL F+ FS DE ++ +L EILS L
Sbjct: 140 CGVIIEKIKKLGDESEKNRKCVNENSVGWVLCDCFDKFSG---DEKLTFMLNEILSLLTW 196
Query: 142 LFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENE 201
+FP+ E ++ L SA+S C+ L S D S R+NA ++ E++S D + +V+ +
Sbjct: 197 MFPIGLEGISKLASATSFRCVAGLLKSTDDSVRQNAAFIMKEILSLD--ETRVHSFAVEN 254
Query: 202 GAIEALFKLIEEPISPTATKAALVVIYHTIASSA-------------------------- 235
G EAL KLI + +S ++TK++L+ IY +
Sbjct: 255 GVAEALVKLIRDSVSSSSTKSSLIAIYQMVLQKPEIASEFLEIGLVSITVEMIVDAENSV 314
Query: 236 --SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKRE 293
AL+VLD IC T+ GRE L MP++VKKI +VSELAT S+S++ KL K
Sbjct: 315 CEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMILKLW---KTG 371
Query: 294 EKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRL-ECVD 344
A +A+++GAFQK+L++LQVG E TKEKA+E+LK+MN + +CVD
Sbjct: 372 NTVAVEDAVRLGAFQKVLLVLQVGYGEETKEKATELLKMMNTQMKLMSDCVD 423
>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20
PE=2 SV=1
Length = 431
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 162/307 (52%), Gaps = 46/307 (14%)
Query: 57 IPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAA 116
+PV S +V EI ++ A D C ++V K+ KESE N+ C+ +N A VL
Sbjct: 116 VPVTSHQVSEICERLSAATRRGDYAACMEMVTKMTRLGKESERNRKCVKENGAGLVLCVC 175
Query: 117 FESFSKTCLDENVS-VLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRR 175
F++FS+ + N S +LEE +S L + P+ E + L + SS ++ L +GD +
Sbjct: 176 FDAFSE---NANASLLLEETVSVLTWMLPIGLEGQSKLTTTSSFNRLVELLRNGD----Q 228
Query: 176 NAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSA 235
NA L+ EL+ + V+ L++ G EA K I + +L+ I+H I ++
Sbjct: 229 NAAFLIKELLELNVTH--VHALTKINGVQEAFMKSINR---DSTCVNSLISIHHMILTNQ 283
Query: 236 ----------------------------SALSVLDGICSTDCGRENANDKPLTMPVVVKK 267
AL+VL+ IC T GRE L +P++VKK
Sbjct: 284 ETVSRFLELDLVNITVEMLVDSENSVCEKALTVLNVICETKEGREKVRRNKLVIPILVKK 343
Query: 268 ILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKAS 327
IL++SE +L VS++WK+C K + + EAL++GAF+KL+V+LQVGC E TKEK +
Sbjct: 344 ILKISE-KKDL-VSVMWKVC---KSGDGSEVEEALRLGAFKKLVVMLQVGCGEGTKEKVT 398
Query: 328 EVLKLMN 334
E+LK+MN
Sbjct: 399 ELLKMMN 405
>sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30
PE=2 SV=1
Length = 448
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 18/164 (10%)
Query: 173 RRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232
R RN V L+ S ++V L + GA+ L ++ + P + AL V
Sbjct: 286 RHRNGVSPALRLLKPISVHKQVRSLMVSIGAVPQLVDILPS-LDPECLELALFV------ 338
Query: 233 SSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKR 292
LD +C+ GR D T+P V+ ++RVSE T ++SILW +C
Sbjct: 339 --------LDALCTDVEGRVAVKDSANTIPYTVRVLMRVSENCTNYALSILWSVC-KLAP 389
Query: 293 EEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336
EE + A++VG KLL+++Q GC K++++E+LKL +LH
Sbjct: 390 EECSPL--AVEVGLAAKLLLVIQSGCDAALKQRSAELLKLCSLH 431
>sp|Q9FHN9|PUB31_ARATH U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31
PE=2 SV=1
Length = 444
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 18/164 (10%)
Query: 173 RRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232
RRRN V L+ S S ++V L GA+ L ++ P L
Sbjct: 282 RRRNGVSPALTLLKSVSVHKQVRNLLVRIGAVPQLVDVL-----PCLDVECL-------- 328
Query: 233 SSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKR 292
SAL VLD +C GR D T+P V+ +++VSE T ++SILW +C
Sbjct: 329 --ESALFVLDSLCLESEGRIALKDSVNTIPHTVRLLMKVSEKCTNYAISILWSVC-KLAS 385
Query: 293 EEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336
EE ++ A++VG KLL+++Q GC K++++E+LKL +LH
Sbjct: 386 EECSSL--AVEVGLAAKLLLVIQSGCDPALKQRSAELLKLCSLH 427
>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22
PE=1 SV=1
Length = 435
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 233 SSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKR 292
+S A+ VLD +C GR + + VV KKILRVS++ +E +V +L L +
Sbjct: 317 NSEMAMVVLDMLCQCAEGRAEFLNHGAAIAVVSKKILRVSQITSERAVRVL--LSVGRFC 374
Query: 293 EEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKL 332
+ E LQ+G KL ++LQV C +TKEKA E+LKL
Sbjct: 375 ATPSLLQEMLQLGVVAKLCLVLQVSCGNKTKEKAKELLKL 414
>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23
PE=1 SV=1
Length = 411
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 134/312 (42%), Gaps = 55/312 (17%)
Query: 58 PVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAF 117
P+C E+ ++ +A ++QV C + ++++ E+ +NK C+ LA
Sbjct: 97 PICKSEIEKLIRD--SASSHENQVKC---LKRLRQIVSENATNKRCLEAAGVPEFLANIV 151
Query: 118 ESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASS------MGCMIWFLNSGDL 171
+ S EN S+ +E L+ LL+ LE ++ + + + G
Sbjct: 152 SNDS-----ENGSLTDEALN---LLYHLETSETVLKNLLNNKKDNNIVKSLTKIMQRGMY 203
Query: 172 SRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAAL------- 224
R A LLL ++ + + + E + +++++ IS ATKAA+
Sbjct: 204 ESRVYATLLLKNILEVADPMQSMTLKPE---VFTEVVQILDDRISQKATKAAMHILVNIC 260
Query: 225 ----------------VVIYHTIASSAS--------ALSVLDGICSTDCGRENANDKPLT 260
V+I + S + A+ VLD +C GR +
Sbjct: 261 PWGRNRHKAVEAGVISVIIELLMDESFTSERRGPEMAMVVLDLLCQCAEGRAEFLNHGAA 320
Query: 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAE 320
+ VV KKILRVS+ A++ +V +L L + E LQ+G KL ++LQV C
Sbjct: 321 IAVVCKKILRVSQTASDRAVRVL--LSVGRFCATPALLHEMLQLGVVAKLCLVLQVSCGG 378
Query: 321 RTKEKASEVLKL 332
+TKEKA E+LKL
Sbjct: 379 KTKEKAKELLKL 390
>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25
PE=2 SV=1
Length = 421
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 117/264 (44%), Gaps = 41/264 (15%)
Query: 89 KIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGE 148
+++ +A++S+ N+ I + A +L FS+T E VS E L+ L++L E
Sbjct: 131 RLRGFARDSDKNRVLIAAHNATEILIKIL--FSETTSSELVS---ESLALLVMLPITEPN 185
Query: 149 ALTHLGS-ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKV-NVLSENEGAIEA 206
+ S + + L + R NA L+ E+VS+ + + +S +E E
Sbjct: 186 QFVSISSDPGRVEFLTRLLFDSSIETRVNAAALI-EIVSTGTKSADLKGSISNSESVFEG 244
Query: 207 LFKLIEEPISPT-ATKAALVVIY--------HTIASSASA-------------------- 237
+ L+ PIS A K + ++ IA +A A
Sbjct: 245 VLDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRCDTERA 304
Query: 238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTA 297
L+ ++ +C T G + LT+P++VK ILRVS+ ATE + L LC E+R +
Sbjct: 305 LATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAEERWRE-- 362
Query: 298 FVEALQVGAFQKLLVLLQVGCAER 321
EA G +LL+++Q C ER
Sbjct: 363 --EAAGAGVVVQLLLMVQSECTER 384
>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26
PE=2 SV=1
Length = 421
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 117/277 (42%), Gaps = 36/277 (12%)
Query: 87 VAKIKEWAKESESNKSCIVDNAAVSVLAAA-FESFSKTCLDENVSVLEEILSTLILLFPL 145
+ +++ A++SE N+ I + A +L F T L + L L+LL
Sbjct: 128 IRRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSLSSELVSESLAL--LVLLHMT 185
Query: 146 EGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIE 205
E E S +G M L + R NA L+ +++ ++S ++ E
Sbjct: 186 ETECEAVASDPSRVGFMTRLLFDSSIEIRVNAAALIEMVLTGAKSMDLKLIISGSDSIFE 245
Query: 206 ALFKLIEEPISPT-ATKAALVVIY--------HTIASSASA------------------- 237
+ L++ PIS A K + I+ +A SA A
Sbjct: 246 GVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFDRCDTER 305
Query: 238 -LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKT 296
L+ ++ +C G + LT+P++VK ILRVS+ ATE + L LC E+R
Sbjct: 306 GLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLALCTAEERCRD- 364
Query: 297 AFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLM 333
EA G +LL+L+Q C ER K KA +LKL+
Sbjct: 365 ---EAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLL 398
>sp|Q9LSA6|PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29
PE=1 SV=1
Length = 415
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 244 ICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQ 303
IC D GR + VVKK+L+VS ATE +V+ILW LC RE+KT +
Sbjct: 315 ICGDDNGR--------CVEGVVKKLLKVSTTATEHAVTILWCLCY-VFREDKTVEETVER 365
Query: 304 VGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336
KLLV++Q C+ ++ A +++K++ +
Sbjct: 366 SNGVTKLLVVIQSNCSAMVRQMAKDLIKVLKFN 398
>sp|Q9LXE3|PUB28_ARATH U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28
PE=1 SV=1
Length = 409
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 230 TIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMN 289
+++ + L +L+ I S GR D + + VV K+++VS ATE +V++LW +C
Sbjct: 288 SVSVTEKCLKLLEAISSCKEGRSEICDG-VCVETVVNKLMKVSTAATEHAVTVLWSVCYL 346
Query: 290 EKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336
K EK A +++ K+L+LLQ C+ + +++LK+ ++
Sbjct: 347 FK--EKKAQDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVFKVN 391
>sp|Q9SF15|PUB24_ARATH E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24
PE=1 SV=1
Length = 456
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTA 297
L VL +C GR + VV K++LRVS A + ++SIL +++ E
Sbjct: 335 LGVLSRLCCCANGRAEILAHRGGIAVVTKRLLRVSPAADDRAISIL--TTVSKFSPENMV 392
Query: 298 FVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRLECVD 344
E + VG +KL +L + C KEKA E+LK + C+D
Sbjct: 393 VEEMVNVGTVEKLCSVLGMDCGLNLKEKAKEILKDHFDEWKKFPCID 439
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 29 IEKDPVTTTPRNGITYDRVNILIENERIIPVCSV 62
I KDPVTT +GITYDR NI+ E+ +P C V
Sbjct: 22 IMKDPVTTV--SGITYDRQNIVKWLEK-VPSCPV 52
>sp|Q9FLF4|PUB27_ARATH U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27
PE=2 SV=1
Length = 420
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 238 LSVLDGICSTDCGR-ENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKT 296
L +L+ + ST GR E + VVKK+++VS ATE +V++LW + K E
Sbjct: 305 LKLLEILASTKEGRSEICGGDGECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFK--EDK 362
Query: 297 AFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336
A V K+L+LLQ C+ + +++LK+ ++
Sbjct: 363 ALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVN 402
>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2
PE=2 SV=1
Length = 707
Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 105/245 (42%), Gaps = 41/245 (16%)
Query: 97 SESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEI----LSTLILLFPLEGEALTH 152
+++NKS I ++ A+ L ++ LEE +TL L +E E T
Sbjct: 493 NDNNKSLIAESGAIVPLIHVLKT----------GYLEEAKANSAATLFSLSVIE-EYKTE 541
Query: 153 LGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE 212
+G A ++ ++ L SG LS +++A L L ++ KV GA+ L +L++
Sbjct: 542 IGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVI----EAGAVRYLVELMD 597
Query: 213 EPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVS 272
P KA +V+ A+ +V +G + G E +PV+V+ + S
Sbjct: 598 -PAFGMVEKAVVVL--------ANLATVREGKIA--IGEEGG------IPVLVEVVELGS 640
Query: 273 ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKL 332
E + + L +LC + + E G L+ L + G A R KEKA +LK
Sbjct: 641 ARGKENATAALLQLCTHSPKFCNNVIRE----GVIPPLVALTKSGTA-RGKEKAQNLLKY 695
Query: 333 MNLHR 337
HR
Sbjct: 696 FKAHR 700
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3
PE=2 SV=2
Length = 760
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVE-ALQVGAFQKLLVLLQVGCA 319
+P++V+ + S+ E + S+L +LC+N + F LQ GA L+ L Q G
Sbjct: 680 IPLLVETVDLGSQRGKENAASVLLQLCLNSPK-----FCTLVLQEGAIPPLVALSQSG-T 733
Query: 320 ERTKEKASEVLKLMNLHRD 338
+R KEKA ++L RD
Sbjct: 734 QRAKEKAQQLLSHFRNQRD 752
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13
PE=1 SV=1
Length = 660
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 103 CIVD-NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL--FPLEGEALTHLGSASSM 159
CI N ++ A + ++ + +++E L+ L +L P EG+A+ +GS+ ++
Sbjct: 504 CIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHP-EGKAI--IGSSDAV 560
Query: 160 GCMIWFLNSGDLSRRRNAVLLLTELVSSD 188
++ F+ +G R NA +L L S D
Sbjct: 561 PSLVEFIRTGSPRNRENAAAVLVHLCSGD 589
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 49 ILIENERIIPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSC 103
IL E+E + P C E N KI T C + C I EW + SE+ C
Sbjct: 173 ILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSC------IYEWMERSENCPVC 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,908,623
Number of Sequences: 539616
Number of extensions: 4128388
Number of successful extensions: 11699
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 11662
Number of HSP's gapped (non-prelim): 35
length of query: 350
length of database: 191,569,459
effective HSP length: 118
effective length of query: 232
effective length of database: 127,894,771
effective search space: 29671586872
effective search space used: 29671586872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)