Query 046820
Match_columns 350
No_of_seqs 165 out of 753
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:46:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.4E-29 3E-34 283.6 26.4 255 64-336 1148-1472(2102)
2 PLN03200 cellulose synthase-in 99.9 2.5E-23 5.4E-28 233.7 27.4 260 61-335 12-312 (2102)
3 KOG4224 Armadillo repeat prote 99.6 9E-15 1.9E-19 140.0 18.5 221 79-333 180-403 (550)
4 PF05804 KAP: Kinesin-associat 99.5 1.8E-12 3.9E-17 136.3 21.7 214 84-340 267-481 (708)
5 KOG4224 Armadillo repeat prote 99.4 1.7E-11 3.7E-16 117.7 17.5 225 78-333 263-491 (550)
6 KOG0166 Karyopherin (importin) 99.3 2.9E-10 6.2E-15 114.8 24.1 252 64-335 111-393 (514)
7 PF05804 KAP: Kinesin-associat 99.3 4.6E-10 1E-14 118.3 21.6 221 77-317 301-588 (708)
8 KOG0166 Karyopherin (importin) 99.3 1E-09 2.2E-14 110.9 22.5 250 64-333 68-349 (514)
9 PF04826 Arm_2: Armadillo-like 99.0 4.2E-08 9.2E-13 92.2 20.1 203 103-340 7-210 (254)
10 KOG2122 Beta-catenin-binding p 98.8 4.7E-08 1E-12 106.5 14.9 242 83-335 315-602 (2195)
11 COG5064 SRP1 Karyopherin (impo 98.8 9.9E-08 2.1E-12 91.5 15.4 246 63-327 72-348 (526)
12 KOG1048 Neural adherens juncti 98.7 2.4E-07 5.2E-12 96.7 14.7 197 62-289 233-453 (717)
13 cd00020 ARM Armadillo/beta-cat 98.6 4.7E-07 1E-11 73.3 11.7 117 103-231 2-119 (120)
14 KOG1048 Neural adherens juncti 98.6 8.3E-07 1.8E-11 92.7 16.1 234 64-317 277-618 (717)
15 cd00020 ARM Armadillo/beta-cat 98.6 7.4E-07 1.6E-11 72.1 12.1 117 154-288 4-120 (120)
16 PF04826 Arm_2: Armadillo-like 98.5 6.8E-06 1.5E-10 77.3 18.2 197 59-291 9-208 (254)
17 KOG4199 Uncharacterized conser 98.3 0.00014 3.1E-09 70.1 21.5 230 79-335 160-403 (461)
18 COG5064 SRP1 Karyopherin (impo 98.3 3.5E-05 7.6E-10 74.3 16.6 233 81-330 130-393 (526)
19 KOG2122 Beta-catenin-binding p 98.3 1.5E-05 3.2E-10 87.8 15.6 245 66-316 239-541 (2195)
20 PF10508 Proteasom_PSMB: Prote 98.2 0.0025 5.4E-08 65.8 27.7 245 79-335 90-420 (503)
21 PF04564 U-box: U-box domain; 97.9 1.2E-06 2.6E-11 66.7 -1.2 27 22-50 6-32 (73)
22 KOG1222 Kinesin associated pro 97.9 0.00086 1.9E-08 67.4 17.7 202 98-316 335-601 (791)
23 KOG0946 ER-Golgi vesicle-tethe 97.9 0.002 4.4E-08 67.9 21.1 244 61-318 21-328 (970)
24 PF10508 Proteasom_PSMB: Prote 97.7 0.0092 2E-07 61.6 22.4 227 64-335 5-231 (503)
25 KOG4642 Chaperone-dependent E3 97.6 1.3E-05 2.8E-10 73.9 -0.2 36 13-50 203-239 (284)
26 PF03224 V-ATPase_H_N: V-ATPas 97.6 0.0079 1.7E-07 58.1 18.4 222 87-334 31-268 (312)
27 KOG1222 Kinesin associated pro 97.5 0.00087 1.9E-08 67.4 11.4 197 63-291 261-458 (791)
28 KOG0946 ER-Golgi vesicle-tethe 97.5 0.0031 6.6E-08 66.7 15.4 151 157-318 22-221 (970)
29 PF05536 Neurochondrin: Neuroc 97.4 0.005 1.1E-07 64.2 16.5 167 150-341 43-216 (543)
30 KOG4199 Uncharacterized conser 97.4 0.089 1.9E-06 51.3 23.4 253 64-334 61-358 (461)
31 KOG2160 Armadillo/beta-catenin 97.3 0.016 3.4E-07 56.5 17.3 187 78-289 95-283 (342)
32 PRK09687 putative lyase; Provi 97.3 0.04 8.6E-07 52.7 19.9 180 109-331 91-278 (280)
33 KOG4500 Rho/Rac GTPase guanine 97.0 0.11 2.4E-06 52.1 19.5 247 79-333 100-388 (604)
34 PF03224 V-ATPase_H_N: V-ATPas 96.9 0.064 1.4E-06 51.8 17.2 211 81-316 72-293 (312)
35 smart00504 Ubox Modified RING 96.9 0.00021 4.5E-09 52.2 -0.1 25 24-50 5-29 (63)
36 PF00514 Arm: Armadillo/beta-c 96.8 0.0023 5E-08 42.7 4.2 39 147-185 2-40 (41)
37 PF00514 Arm: Armadillo/beta-c 96.8 0.00082 1.8E-08 44.9 1.8 39 97-143 1-39 (41)
38 PRK09687 putative lyase; Provi 96.7 0.14 3E-06 49.0 17.7 152 109-287 24-187 (280)
39 KOG2160 Armadillo/beta-catenin 96.7 0.17 3.8E-06 49.4 18.2 175 128-326 96-273 (342)
40 PF05536 Neurochondrin: Neuroc 96.7 0.025 5.4E-07 59.0 13.2 160 156-335 4-168 (543)
41 KOG4500 Rho/Rac GTPase guanine 96.7 0.21 4.5E-06 50.2 18.5 201 65-288 318-519 (604)
42 KOG0168 Putative ubiquitin fus 96.6 0.061 1.3E-06 57.6 14.8 148 158-315 168-345 (1051)
43 KOG0168 Putative ubiquitin fus 96.5 0.089 1.9E-06 56.5 15.5 180 128-314 181-389 (1051)
44 KOG1789 Endocytosis protein RM 96.4 0.4 8.8E-06 52.9 19.8 136 83-230 1741-1881(2235)
45 PRK13800 putative oxidoreducta 96.3 0.82 1.8E-05 50.7 22.6 78 79-184 634-711 (897)
46 KOG4646 Uncharacterized conser 95.8 0.11 2.3E-06 44.5 10.1 111 64-186 18-128 (173)
47 PF13646 HEAT_2: HEAT repeats; 95.6 0.098 2.1E-06 39.9 8.5 87 110-227 1-87 (88)
48 PF14664 RICTOR_N: Rapamycin-i 95.5 1.2 2.5E-05 44.5 17.7 171 89-290 6-178 (371)
49 smart00185 ARM Armadillo/beta- 95.4 0.033 7.2E-07 36.3 4.5 38 148-185 3-40 (41)
50 smart00185 ARM Armadillo/beta- 95.0 0.034 7.3E-07 36.2 3.4 39 98-144 2-40 (41)
51 KOG4646 Uncharacterized conser 94.9 0.17 3.6E-06 43.4 8.2 121 128-272 30-150 (173)
52 PF13646 HEAT_2: HEAT repeats; 94.7 0.22 4.8E-06 37.9 7.9 85 159-283 1-87 (88)
53 PTZ00429 beta-adaptin; Provisi 94.3 9.7 0.00021 41.5 22.4 214 62-336 32-246 (746)
54 PRK13800 putative oxidoreducta 94.1 8.8 0.00019 42.6 21.8 144 160-331 745-895 (897)
55 PF11789 zf-Nse: Zinc-finger o 94.0 0.0089 1.9E-07 43.3 -1.2 28 21-50 12-40 (57)
56 KOG2171 Karyopherin (importin) 93.7 2 4.3E-05 47.8 15.4 151 158-332 349-501 (1075)
57 PF01602 Adaptin_N: Adaptin N 93.5 9.9 0.00021 38.7 22.0 194 67-290 80-298 (526)
58 PF01602 Adaptin_N: Adaptin N 93.3 4.8 0.0001 41.1 16.9 129 79-232 205-333 (526)
59 KOG1242 Protein containing ada 92.7 5.6 0.00012 41.6 16.1 211 105-338 210-448 (569)
60 cd00256 VATPase_H VATPase_H, r 92.4 14 0.0003 37.6 21.6 199 108-335 53-258 (429)
61 KOG1293 Proteins containing ar 92.0 3.2 6.9E-05 43.8 13.3 123 193-335 411-533 (678)
62 PF12348 CLASP_N: CLASP N term 91.8 1.3 2.9E-05 40.1 9.5 180 78-291 19-209 (228)
63 COG5113 UFD2 Ubiquitin fusion 91.8 0.068 1.5E-06 55.6 1.0 32 18-50 851-883 (929)
64 PF12348 CLASP_N: CLASP N term 91.8 3.7 8.1E-05 37.1 12.5 164 167-338 17-209 (228)
65 PF11841 DUF3361: Domain of un 91.6 8.3 0.00018 33.8 13.6 119 155-291 9-134 (160)
66 KOG3036 Protein involved in ce 91.5 7.7 0.00017 36.6 14.0 150 82-234 95-249 (293)
67 cd00256 VATPase_H VATPase_H, r 90.9 20 0.00044 36.5 20.6 191 129-338 115-311 (429)
68 KOG2973 Uncharacterized conser 90.9 3.1 6.8E-05 40.3 11.1 187 66-288 7-204 (353)
69 KOG2171 Karyopherin (importin) 89.8 22 0.00047 40.0 17.7 177 109-317 345-528 (1075)
70 PF13513 HEAT_EZ: HEAT-like re 88.5 1.5 3.3E-05 30.6 5.5 55 171-230 1-55 (55)
71 PF15227 zf-C3HC4_4: zinc fing 88.3 0.18 3.9E-06 34.0 0.5 22 27-50 5-26 (42)
72 PF10165 Ric8: Guanine nucleot 87.3 4.5 9.8E-05 41.2 10.1 141 86-231 1-167 (446)
73 KOG2999 Regulator of Rac1, req 87.2 17 0.00036 38.1 13.8 131 158-292 84-246 (713)
74 PF06371 Drf_GBD: Diaphanous G 87.1 1.5 3.2E-05 38.5 5.8 53 236-288 135-187 (187)
75 KOG1293 Proteins containing ar 86.3 16 0.00036 38.7 13.5 141 79-230 390-531 (678)
76 PF09759 Atx10homo_assoc: Spin 86.2 2.2 4.8E-05 34.6 5.8 66 83-154 3-69 (102)
77 PF00790 VHS: VHS domain; Int 86.1 16 0.00035 30.8 11.5 77 261-340 44-123 (140)
78 KOG3678 SARM protein (with ste 85.9 7.3 0.00016 39.9 10.3 137 152-313 175-315 (832)
79 PF04078 Rcd1: Cell differenti 85.8 12 0.00026 35.5 11.2 145 82-232 66-218 (262)
80 PTZ00429 beta-adaptin; Provisi 85.7 38 0.00083 37.0 16.6 92 127-232 117-208 (746)
81 PF12031 DUF3518: Domain of un 84.9 2.6 5.7E-05 39.4 6.3 82 130-214 139-228 (257)
82 cd03561 VHS VHS domain family; 84.8 6.5 0.00014 33.0 8.4 82 261-345 39-123 (133)
83 cd03569 VHS_Hrs_Vps27p VHS dom 83.2 9.7 0.00021 32.6 8.8 79 260-341 42-120 (142)
84 KOG3678 SARM protein (with ste 82.1 24 0.00051 36.4 12.1 123 81-212 237-361 (832)
85 cd03568 VHS_STAM VHS domain fa 81.7 11 0.00025 32.3 8.7 79 260-341 38-116 (144)
86 PF09759 Atx10homo_assoc: Spin 81.7 4 8.6E-05 33.1 5.5 55 236-291 5-62 (102)
87 cd03569 VHS_Hrs_Vps27p VHS dom 81.7 10 0.00022 32.4 8.4 71 157-229 41-111 (142)
88 PF06371 Drf_GBD: Diaphanous G 80.8 15 0.00033 32.0 9.5 116 62-184 66-185 (187)
89 KOG2973 Uncharacterized conser 80.7 40 0.00086 32.9 12.6 140 128-291 16-164 (353)
90 cd03561 VHS VHS domain family; 80.5 14 0.0003 31.0 8.7 70 157-228 37-108 (133)
91 PF10165 Ric8: Guanine nucleot 80.3 72 0.0016 32.5 20.6 206 78-290 44-339 (446)
92 COG5096 Vesicle coat complex, 79.1 13 0.00029 40.3 9.9 93 126-232 103-195 (757)
93 PF12755 Vac14_Fab1_bd: Vacuol 78.1 13 0.00027 29.8 7.3 67 158-230 28-94 (97)
94 PF13513 HEAT_EZ: HEAT-like re 78.1 5 0.00011 27.8 4.5 52 130-184 2-55 (55)
95 cd03568 VHS_STAM VHS domain fa 77.2 18 0.00039 31.0 8.6 59 157-217 37-95 (144)
96 KOG1789 Endocytosis protein RM 77.2 50 0.0011 37.5 13.3 137 176-335 1744-1883(2235)
97 smart00288 VHS Domain present 76.9 18 0.00039 30.4 8.4 59 157-217 37-95 (133)
98 PF04063 DUF383: Domain of unk 76.7 33 0.00072 30.9 10.5 96 234-335 12-132 (192)
99 smart00288 VHS Domain present 76.6 21 0.00045 30.1 8.6 78 261-341 39-117 (133)
100 KOG1242 Protein containing ada 76.6 1.1E+02 0.0023 32.4 18.3 166 157-339 134-328 (569)
101 cd03567 VHS_GGA VHS domain fam 76.2 21 0.00046 30.5 8.6 75 260-337 39-118 (139)
102 TIGR02270 conserved hypothetic 76.0 93 0.002 31.5 17.3 28 259-286 178-205 (410)
103 PF11698 V-ATPase_H_C: V-ATPas 73.0 11 0.00025 31.3 6.0 68 64-141 45-112 (119)
104 PF12031 DUF3518: Domain of un 71.8 20 0.00043 33.7 7.8 136 171-315 80-226 (257)
105 PF12755 Vac14_Fab1_bd: Vacuol 71.6 24 0.00051 28.2 7.4 67 260-334 28-96 (97)
106 COG1413 FOG: HEAT repeat [Ener 71.0 99 0.0021 29.5 14.8 148 108-289 43-210 (335)
107 PF14664 RICTOR_N: Rapamycin-i 70.7 1.2E+02 0.0026 30.3 18.9 239 81-334 40-363 (371)
108 cd03567 VHS_GGA VHS domain fam 70.4 32 0.0007 29.3 8.4 55 157-213 38-92 (139)
109 PF04063 DUF383: Domain of unk 70.3 29 0.00063 31.3 8.5 76 235-315 76-157 (192)
110 PF02985 HEAT: HEAT repeat; I 70.2 11 0.00024 23.1 4.1 29 203-232 1-29 (31)
111 PF04078 Rcd1: Cell differenti 68.7 1.1E+02 0.0024 29.1 13.2 152 169-334 7-167 (262)
112 PF08167 RIX1: rRNA processing 68.4 80 0.0017 27.4 11.9 118 158-290 26-145 (165)
113 KOG2042 Ubiquitin fusion degra 68.3 1.5 3.3E-05 48.2 -0.3 32 18-50 867-899 (943)
114 PF02985 HEAT: HEAT repeat; I 68.0 12 0.00027 22.9 4.0 28 159-186 2-29 (31)
115 KOG2734 Uncharacterized conser 67.7 1.5E+02 0.0033 30.4 13.9 34 152-185 120-153 (536)
116 COG5240 SEC21 Vesicle coat com 67.0 1.8E+02 0.0039 31.0 16.4 25 317-344 537-561 (898)
117 PF08045 CDC14: Cell division 66.9 47 0.001 31.5 9.4 98 82-185 107-206 (257)
118 PF14500 MMS19_N: Dos2-interac 66.4 1.2E+02 0.0026 28.7 15.4 190 77-290 10-239 (262)
119 PF00790 VHS: VHS domain; Int 66.2 26 0.00056 29.6 7.0 58 158-217 43-100 (140)
120 KOG0289 mRNA splicing factor [ 65.6 2.9 6.3E-05 42.1 1.1 76 26-107 6-132 (506)
121 KOG1248 Uncharacterized conser 63.6 2.7E+02 0.0059 31.9 16.4 175 130-335 712-898 (1176)
122 TIGR02270 conserved hypothetic 62.5 1.8E+02 0.0039 29.4 21.7 27 306-335 270-296 (410)
123 KOG2611 Neurochondrin/leucine- 61.0 2.1E+02 0.0047 29.8 14.1 144 80-230 25-180 (698)
124 KOG1241 Karyopherin (importin) 61.0 2.6E+02 0.0056 30.7 16.8 181 100-292 309-534 (859)
125 PF04821 TIMELESS: Timeless pr 58.8 1.4E+02 0.0031 28.1 11.3 106 81-212 9-119 (266)
126 KOG2259 Uncharacterized conser 58.0 62 0.0013 34.7 9.1 143 104-269 369-525 (823)
127 cd00197 VHS_ENTH_ANTH VHS, ENT 56.7 68 0.0015 25.8 7.6 70 261-333 39-113 (115)
128 PF08045 CDC14: Cell division 56.3 55 0.0012 31.0 7.8 85 132-219 108-193 (257)
129 PF13764 E3_UbLigase_R4: E3 ub 53.9 3.5E+02 0.0075 30.0 16.9 77 64-140 119-196 (802)
130 KOG3039 Uncharacterized conser 52.8 4.4 9.6E-05 37.9 -0.1 24 25-50 48-71 (303)
131 cd03572 ENTH_epsin_related ENT 52.6 87 0.0019 26.2 7.6 71 262-335 41-119 (122)
132 KOG2734 Uncharacterized conser 51.8 2.9E+02 0.0063 28.5 14.4 124 83-208 243-371 (536)
133 cd03565 VHS_Tom1 VHS domain fa 51.3 1.3E+02 0.0027 25.7 8.7 80 260-342 39-122 (141)
134 COG1413 FOG: HEAT repeat [Ener 49.7 1.5E+02 0.0032 28.3 10.1 59 157-230 43-101 (335)
135 PF11841 DUF3361: Domain of un 49.4 1.3E+02 0.0029 26.4 8.5 97 86-189 37-134 (160)
136 COG5215 KAP95 Karyopherin (imp 48.5 1.3E+02 0.0029 31.9 9.6 116 108-232 321-437 (858)
137 PF05918 API5: Apoptosis inhib 46.7 1.6E+02 0.0035 31.0 10.2 77 168-253 33-113 (556)
138 PF05004 IFRD: Interferon-rela 46.6 2.8E+02 0.006 26.8 16.4 161 158-338 87-260 (309)
139 COG5096 Vesicle coat complex, 46.4 1.9E+02 0.0041 31.7 10.8 104 158-289 93-196 (757)
140 KOG1517 Guanine nucleotide bin 45.8 5.2E+02 0.011 29.7 18.0 179 87-289 488-672 (1387)
141 PF12717 Cnd1: non-SMC mitotic 45.5 1.1E+02 0.0024 26.8 7.7 68 157-232 25-92 (178)
142 KOG1061 Vesicle coat complex A 45.4 1.7E+02 0.0037 31.8 10.1 68 158-232 122-189 (734)
143 COG5209 RCD1 Uncharacterized p 43.8 1.5E+02 0.0032 28.0 8.2 146 83-231 117-267 (315)
144 PF12717 Cnd1: non-SMC mitotic 41.6 2.4E+02 0.0052 24.6 14.1 109 81-213 3-112 (178)
145 KOG0213 Splicing factor 3b, su 41.3 1.4E+02 0.0031 32.7 8.7 114 158-291 800-915 (1172)
146 KOG2759 Vacuolar H+-ATPase V1 40.3 4.2E+02 0.0091 27.0 11.7 94 133-231 175-270 (442)
147 PF14225 MOR2-PAG1_C: Cell mor 39.3 87 0.0019 29.6 6.4 53 157-214 188-240 (262)
148 PF05004 IFRD: Interferon-rela 37.9 3.8E+02 0.0082 25.9 11.8 54 159-215 45-99 (309)
149 KOG1087 Cytosolic sorting prot 37.5 68 0.0015 33.1 5.7 77 260-343 39-116 (470)
150 PF06012 DUF908: Domain of Unk 36.9 2.4E+02 0.0053 27.4 9.3 88 171-268 236-325 (329)
151 COG5369 Uncharacterized conser 35.9 1.2E+02 0.0026 32.0 7.0 133 178-335 410-542 (743)
152 KOG1077 Vesicle coat complex A 35.6 6.3E+02 0.014 27.8 13.3 220 64-303 109-411 (938)
153 KOG2199 Signal transducing ada 35.5 1.9E+02 0.0042 29.2 8.1 80 260-342 46-125 (462)
154 PF13923 zf-C3HC4_2: Zinc fing 32.8 16 0.00034 23.7 0.1 21 27-49 5-26 (39)
155 COG4530 Uncharacterized protei 32.7 16 0.00035 30.0 0.2 22 28-50 21-42 (129)
156 PF11698 V-ATPase_H_C: V-ATPas 30.7 89 0.0019 26.1 4.3 39 147-185 76-114 (119)
157 PLN03205 ATR interacting prote 30.7 3.5E+02 0.0076 27.7 9.1 129 202-335 302-446 (652)
158 COG5231 VMA13 Vacuolar H+-ATPa 30.7 1.6E+02 0.0035 29.1 6.6 97 131-231 165-264 (432)
159 KOG1087 Cytosolic sorting prot 30.2 84 0.0018 32.4 5.0 70 157-228 38-108 (470)
160 KOG1060 Vesicle coat complex A 30.0 8.1E+02 0.018 27.3 13.9 149 61-232 282-458 (968)
161 KOG1059 Vesicle coat complex A 28.6 1.7E+02 0.0038 31.8 6.9 116 162-288 149-303 (877)
162 PF11701 UNC45-central: Myosin 28.5 3.8E+02 0.0082 23.0 10.2 92 134-230 62-157 (157)
163 KOG1058 Vesicle coat complex C 28.3 6.5E+02 0.014 27.9 11.0 74 158-241 135-208 (948)
164 PF09538 FYDLN_acid: Protein o 27.6 37 0.0008 27.8 1.5 19 28-47 21-39 (108)
165 PF12331 DUF3636: Protein of u 27.4 81 0.0018 27.4 3.7 34 236-269 113-146 (149)
166 KOG1824 TATA-binding protein-i 26.6 8.7E+02 0.019 27.7 11.8 129 158-292 436-603 (1233)
167 PF04064 DUF384: Domain of unk 25.4 1.2E+02 0.0026 21.9 3.7 29 241-271 2-30 (58)
168 PF10363 DUF2435: Protein of u 25.3 3.4E+02 0.0073 21.3 7.8 68 159-232 5-72 (92)
169 cd03565 VHS_Tom1 VHS domain fa 25.1 4.2E+02 0.0092 22.4 8.0 56 157-214 38-95 (141)
170 PF12726 SEN1_N: SEN1 N termin 24.9 9.1E+02 0.02 26.2 14.2 102 201-305 440-568 (727)
171 PF12397 U3snoRNP10: U3 small 24.0 3.8E+02 0.0083 21.5 9.9 67 158-233 7-75 (121)
172 PF04499 SAPS: SIT4 phosphatas 23.7 6.5E+02 0.014 26.0 10.1 128 156-290 20-150 (475)
173 KOG4413 26S proteasome regulat 23.4 7.6E+02 0.016 24.7 17.9 155 132-290 188-379 (524)
174 PF13445 zf-RING_UBOX: RING-ty 22.4 15 0.00033 24.8 -1.4 22 26-50 4-29 (43)
175 PF13764 E3_UbLigase_R4: E3 ub 21.6 3.5E+02 0.0075 30.0 7.9 79 253-335 111-197 (802)
176 KOG3036 Protein involved in ce 21.2 7.3E+02 0.016 23.7 17.9 245 61-334 25-290 (293)
177 PF14668 RICTOR_V: Rapamycin-i 20.7 2.2E+02 0.0048 21.5 4.5 21 235-255 47-67 (73)
178 PF05918 API5: Apoptosis inhib 20.5 2.3E+02 0.0051 29.9 6.1 89 82-214 20-108 (556)
179 KOG2259 Uncharacterized conser 20.1 1.1E+03 0.023 25.8 10.7 69 155-232 371-439 (823)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=1.4e-29 Score=283.64 Aligned_cols=255 Identities=18% Similarity=0.188 Sum_probs=213.8
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
|..++..|++.. ..+..+..|+++|+.|++++++||+||+++|++++|+.+|..+... ......++++.+|+
T Consensus 1148 Ip~Lv~lL~~~~--~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s~---s~e~a~~ElL~IL~--- 1219 (2102)
T PLN03200 1148 IPLLVDLLKPIP--DRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQD---STEEAASELLRILF--- 1219 (2102)
T ss_pred HHHHHHHhcccc--ccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCcc---chhHHHHHHHHHHh---
Confidence 555666666532 1124578999999999999999999999999999999999754221 12445677777654
Q ss_pred CCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhh------------------hchhhHHH
Q 046820 144 PLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVL------------------SENEGAIE 205 (350)
Q Consensus 144 s~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~I------------------g~~~g~i~ 205 (350)
.+++.+..+.+.+++++|+++|++|+.++|.+|+.+|++|+... +++..+ +..++++.
T Consensus 1220 -~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~---~~~~~~~a~~ai~pLv~ll~~~~~~~~~~a~~ 1295 (2102)
T PLN03200 1220 -SSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAE---HIRDSELARQAVQPLVEMLNTGSESEQHAAIG 1295 (2102)
T ss_pred -CCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh---hhhhhhhhhccchHHHHHhcccchhhhHHHHH
Confidence 46677777888889999999999999999999999999998763 432222 33468888
Q ss_pred HHHHHhcCCCChHHHH-----HHHHH----------------HHHhhhh-------------------------------
Q 046820 206 ALFKLIEEPISPTATK-----AALVV----------------IYHTIAS------------------------------- 233 (350)
Q Consensus 206 ~LV~lL~~~~~~~a~k-----~Al~a----------------L~~L~~~------------------------------- 233 (350)
+|+++++++.++++.+ .++.+ +++||.+
T Consensus 1296 ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~ 1375 (2102)
T PLN03200 1296 ALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTA 1375 (2102)
T ss_pred HHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchH
Confidence 8888998888899999 88999 8888763
Q ss_pred HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHH
Q 046820 234 SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVL 313 (350)
Q Consensus 234 ~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~l 313 (350)
.|.++++|++||.|+|||+++..|++++|.++ +++++|+.++|.||++||.||+. ++.++.+|++.|+|++||.+
T Consensus 1376 ~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~-~ilrvS~~a~E~AV~aL~kl~~~----~~~v~~Emv~~G~~~kllll 1450 (2102)
T PLN03200 1376 QEAGVCALDRLLDDEQLAELVAAHGAVVPLVG-LVVGTNYVLHEAAISALIKLGKD----RPPCKLDMVKAGIIERVLDI 1450 (2102)
T ss_pred HHHHHHHHHHHhcCHhhHHHHHHcCChhhHHH-HHHcCCHHHHHHHHHHHHHHhCC----ChHHHHHHHHhCHHHHHHHH
Confidence 16899999999999999999999999999988 89999999999999999999953 36799999999999999999
Q ss_pred HHhcCchHHHHHHHHHHHHHHhc
Q 046820 314 LQVGCAERTKEKASEVLKLMNLH 336 (350)
Q Consensus 314 lq~~~t~~ak~kA~~LLk~l~~~ 336 (350)
||+ |+.++|+||++|||+|+.+
T Consensus 1451 LQ~-c~~~lkekAaeLLrlL~~~ 1472 (2102)
T PLN03200 1451 LPE-APDSLCSAIAELLRILTNN 1472 (2102)
T ss_pred HHc-CCHHHHHHHHHHHHHhccc
Confidence 999 9999999999999999974
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.92 E-value=2.5e-23 Score=233.72 Aligned_cols=260 Identities=13% Similarity=0.098 Sum_probs=212.7
Q ss_pred cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhc-cCchHHHHHHHHhccccccccchHHHHHHHHHH
Q 046820 61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVD-NAAVSVLAAAFESFSKTCLDENVSVLEEILSTL 139 (350)
Q Consensus 61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~-aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L 139 (350)
...+.+++++|++... +++++.+|+++|+.+++++++||.+|++ +|+||.|+.+|. .+ +..++++|+++|
T Consensus 12 ~~~v~~Lve~L~s~~s--s~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~---sg----~~~vk~nAaaaL 82 (2102)
T PLN03200 12 LASVAQCIEQLRAKSS--SPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR---SG----TLGAKVNAAAVL 82 (2102)
T ss_pred HHHHHHHHHHHHcccC--CHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc---CC----CHHHHHHHHHHH
Confidence 3578899999987531 4678999999999999999999999997 699999999996 22 377899999999
Q ss_pred HhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHH
Q 046820 140 ILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTA 219 (350)
Q Consensus 140 ~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a 219 (350)
. +|+.++++|..|...|+|++|+++|++|+.++|++|+.+|++|+....++.++..|+...|+||+|+.+++++.....
T Consensus 83 ~-nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~ 161 (2102)
T PLN03200 83 G-VLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDK 161 (2102)
T ss_pred H-HHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhH
Confidence 9 899999999888889999999999999999999999999999997641124555555568999999999998732222
Q ss_pred --HHHHHHHHHHhhhhH----------------------------HHHHHHHHHHhC-CHhhHHHhhcCCCChHHHHHHH
Q 046820 220 --TKAALVVIYHTIASS----------------------------ASALSVLDGICS-TDCGRENANDKPLTMPVVVKKI 268 (350)
Q Consensus 220 --~k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~-~~eGr~ai~~~~~~v~~lv~~l 268 (350)
...|..+|+|||... +.|+.+|.+++. +++++.++. +.|+||.+|++|
T Consensus 162 ~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVI-eaGaVP~LV~LL 240 (2102)
T PLN03200 162 VVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVL-DAGAVKQLLKLL 240 (2102)
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHH-HCCCHHHHHHHH
Confidence 244568999998531 378888888876 478999996 789999999988
Q ss_pred hccC-hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcC--------chHHHHHHHHHHHHHHh
Q 046820 269 LRVS-ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGC--------AERTKEKASEVLKLMNL 335 (350)
Q Consensus 269 ~~~S-~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~--------t~~ak~kA~~LLk~l~~ 335 (350)
..++ +..+|+|+.+|++||+.+ .+.+..+++.|+++.|+.++++.. +...++.|...|..+.+
T Consensus 241 ~sg~~~~VRE~AA~AL~nLAs~s----~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 241 GQGNEVSVRAEAAGALEALSSQS----KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred ccCCChHHHHHHHHHHHHHhcCC----HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 7765 478999999999999854 468888889999999998887432 23458888888887766
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=9e-15 Score=139.98 Aligned_cols=221 Identities=17% Similarity=0.180 Sum_probs=174.1
Q ss_pred ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhccc--C
Q 046820 79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGS--A 156 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~--~ 156 (350)
|-..|..+...|-+++. +.+||+.++.+|.+|+||+++.+ + +..+|+-+-+++. |..++..++++++. +
T Consensus 180 dirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s---~----d~dvqyycttais-nIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 180 DIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKS---G----DLDVQYYCTTAIS-NIAVDRRARKILAQAEP 250 (550)
T ss_pred hhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhcc---C----ChhHHHHHHHHhh-hhhhhHHHHHHHHhccc
Confidence 44667788988888884 57999999999999999999972 2 3678999989998 88888888888865 5
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHH
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS 236 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~ 236 (350)
..++.||.+++.|+.+.|-+|..+|.+|++.. +|...|-+ .|.+|.||++|+++.- ...-+.+-++.|+
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt---~Yq~eiv~-ag~lP~lv~Llqs~~~-plilasVaCIrni------ 319 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDT---EYQREIVE-AGSLPLLVELLQSPMG-PLILASVACIRNI------ 319 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccc---hhhhHHHh-cCCchHHHHHHhCcch-hHHHHHHHHHhhc------
Confidence 59999999999999999999999999999764 66666646 7999999999987632 2333334444444
Q ss_pred HHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHH
Q 046820 237 ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV-SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQ 315 (350)
Q Consensus 237 aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~-S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq 315 (350)
+- .++.+-+..++|.+.++|+++..+ +...+-||+++||+|...+ +..+......|++++|..++-
T Consensus 320 --------si-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass----e~n~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 320 --------SI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS----EHNVSVIRESGAIPKLIELLL 386 (550)
T ss_pred --------cc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh----hhhhHHHhhcCchHHHHHHHh
Confidence 34 457777778999999999999876 5668999999999999854 456777789999999988776
Q ss_pred hcCchHHHHHHHHHHHHH
Q 046820 316 VGCAERTKEKASEVLKLM 333 (350)
Q Consensus 316 ~~~t~~ak~kA~~LLk~l 333 (350)
+++-..+..-..-+..|
T Consensus 387 -D~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 387 -DGPVSVQSEISACIAQL 403 (550)
T ss_pred -cCChhHHHHHHHHHHHH
Confidence 55555666544444444
No 4
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.50 E-value=1.8e-12 Score=136.28 Aligned_cols=214 Identities=17% Similarity=0.155 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHH
Q 046820 84 KDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMI 163 (350)
Q Consensus 84 ~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv 163 (350)
..++.-|-+++.+ ..++.-|.+.|.|+.|+++|. .+ +.+++-.+++.|- .||+..|||..+.+.|.++.|+
T Consensus 267 rv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ld---r~----n~ellil~v~fLk-kLSi~~ENK~~m~~~giV~kL~ 337 (708)
T PF05804_consen 267 RVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLD---RE----NEELLILAVTFLK-KLSIFKENKDEMAESGIVEKLL 337 (708)
T ss_pred HHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HHcCCHHHHHHHHHcCCHHHHH
Confidence 3466667788754 688888999999999999996 22 3678888989998 8999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 046820 164 WFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDG 243 (350)
Q Consensus 164 ~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~ 243 (350)
++|.+++.+....|..+|++||.+ +..+..|-+ .|+||.|+.+|.++.. ...++++|.+
T Consensus 338 kLl~s~~~~l~~~aLrlL~NLSfd---~~~R~~mV~-~GlIPkLv~LL~d~~~-----------------~~val~iLy~ 396 (708)
T PF05804_consen 338 KLLPSENEDLVNVALRLLFNLSFD---PELRSQMVS-LGLIPKLVELLKDPNF-----------------REVALKILYN 396 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHhCcC---HHHHHHHHH-CCCcHHHHHHhCCCch-----------------HHHHHHHHHH
Confidence 999999999999999999999976 367777745 8999999999987632 1357788888
Q ss_pred HhCCHhhHHHhhcCCCChHHHHHHHhccCh-hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHH
Q 046820 244 ICSTDCGRENANDKPLTMPVVVKKILRVSE-LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERT 322 (350)
Q Consensus 244 L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~-~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~a 322 (350)
||..+++|..+. ..++||.+++.++.++. ..+-.+++.+.+++.+. ++.+.+.+.|+++.|+.......
T Consensus 397 LS~dd~~r~~f~-~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-----rnaqlm~~g~gL~~L~~ra~~~~---- 466 (708)
T PF05804_consen 397 LSMDDEARSMFA-YTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-----RNAQLMCEGNGLQSLMKRALKTR---- 466 (708)
T ss_pred hccCHhhHHHHh-hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-----HHHHHHHhcCcHHHHHHHHHhcc----
Confidence 888889998875 66799999999988754 34445778888888863 47788888888998876554332
Q ss_pred HHHHHHHHHHHHhccCCC
Q 046820 323 KEKASEVLKLMNLHRDRL 340 (350)
Q Consensus 323 k~kA~~LLk~l~~~~~~~ 340 (350)
-.-|+|++|....++
T Consensus 467 ---D~lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 467 ---DPLLLKLIRNISQHD 481 (708)
T ss_pred ---cHHHHHHHHHHHhcC
Confidence 233778888766655
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.7e-11 Score=117.68 Aligned_cols=225 Identities=16% Similarity=0.178 Sum_probs=166.9
Q ss_pred CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCC
Q 046820 78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSAS 157 (350)
Q Consensus 78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~ 157 (350)
+|...+++|--.|+.++.+ .+..+-|+++|.+|.++++|++ + .-...-+.++.+. |+++.+-|-..|++.|
T Consensus 263 ~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs---~----~~plilasVaCIr-nisihplNe~lI~dag 333 (550)
T KOG4224|consen 263 GSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQS---P----MGPLILASVACIR-NISIHPLNEVLIADAG 333 (550)
T ss_pred CChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhC---c----chhHHHHHHHHHh-hcccccCcccceeccc
Confidence 5678889999999999987 4666789999999999999973 1 1224455668888 8999887888899999
Q ss_pred cHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHH
Q 046820 158 SMGCMIWFLNSGD-LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS 236 (350)
Q Consensus 158 ~l~~Lv~~L~~gs-~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~ 236 (350)
++.+||++|+-|+ .+.+-+|..+|.+|+... +.++..|-. .|+||.|..++.|++- +..+.
T Consensus 334 fl~pLVrlL~~~dnEeiqchAvstLrnLAass--e~n~~~i~e-sgAi~kl~eL~lD~pv---------------svqse 395 (550)
T KOG4224|consen 334 FLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS--EHNVSVIRE-SGAIPKLIELLLDGPV---------------SVQSE 395 (550)
T ss_pred chhHHHHHHhcCCchhhhhhHHHHHHHHhhhh--hhhhHHHhh-cCchHHHHHHHhcCCh---------------hHHHH
Confidence 9999999999994 569999999999998643 356666634 7999999999998731 12345
Q ss_pred HHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHh--hchHH-HHHHH
Q 046820 237 ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQ--VGAFQ-KLLVL 313 (350)
Q Consensus 237 aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~--~G~v~-~LL~l 313 (350)
.-+.+..|+-.++-|.++. +.|.+|.++......|...+.+|+++|.++|..--+ =..+.|+.. .+.++ .|...
T Consensus 396 isac~a~Lal~d~~k~~ll-d~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~--YarviEawd~P~~gi~g~L~Rf 472 (550)
T KOG4224|consen 396 ISACIAQLALNDNDKEALL-DSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH--YARVIEAWDHPVQGIQGRLARF 472 (550)
T ss_pred HHHHHHHHHhccccHHHHh-hcCCcceeecccCccchhhcccHHHHHHhhhhhhHH--HHHHHHHhcCcchhHHHHHHHH
Confidence 5667777777888899996 889999999998889999999999999999985421 123445542 22333 33333
Q ss_pred HHhcCchHHHHHHHHHHHHH
Q 046820 314 LQVGCAERTKEKASEVLKLM 333 (350)
Q Consensus 314 lq~~~t~~ak~kA~~LLk~l 333 (350)
+.+. ..--+..|+..+..|
T Consensus 473 l~S~-~~tf~hia~wTI~qL 491 (550)
T KOG4224|consen 473 LASH-ELTFRHIARWTIQQL 491 (550)
T ss_pred Hhhh-HHHHHHHHHHHHHHH
Confidence 3443 334555555544433
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2.9e-10 Score=114.78 Aligned_cols=252 Identities=15% Similarity=0.165 Sum_probs=199.1
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
|..+|.-+... .++.-+.+|+..|.++|..+.+.-+.++++|++|.++.+|.+ + +..++|.|+.+|- |.
T Consensus 111 v~~lV~~l~~~---~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s--~-----~~~v~eQavWALg-NI 179 (514)
T KOG0166|consen 111 VPRLVEFLSRD---DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS--P-----SADVREQAVWALG-NI 179 (514)
T ss_pred HHHHHHHHccC---CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC--C-----cHHHHHHHHHHHh-cc
Confidence 44555555432 246778999999999999999999999999999999999962 2 3679999999999 88
Q ss_pred CCCh-hhHhhcccCCcHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820 144 PLEG-EALTHLGSASSMGCMIWFLNSGD-LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK 221 (350)
Q Consensus 144 s~~~-e~k~~i~~~~~l~~Lv~~L~~gs-~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k 221 (350)
.-+. ..|..+.+.|+++.|..++...+ ..-..+++.+|.+|....+.+.....+ ..++|.|+.+|.+. ++.-..
T Consensus 180 agds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v---~~iLp~L~~ll~~~-D~~Vl~ 255 (514)
T KOG0166|consen 180 AGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV---APILPALLRLLHST-DEEVLT 255 (514)
T ss_pred ccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH---HHHHHHHHHHHhcC-CHHHHH
Confidence 8554 66888889999999999998874 467889999999998765312222334 78999999999876 778889
Q ss_pred HHHHHHHHhhhh-HH---------------------------HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc-C
Q 046820 222 AALVVIYHTIAS-SA---------------------------SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV-S 272 (350)
Q Consensus 222 ~Al~aL~~L~~~-~e---------------------------~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~-S 272 (350)
||..+|..|+.. +| .||..+.++++..+--...+...+++|.+..++.+. .
T Consensus 256 Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~ 335 (514)
T KOG0166|consen 256 DACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPK 335 (514)
T ss_pred HHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcc
Confidence 999999999732 21 699999999886555555556889999998876543 3
Q ss_pred hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 273 ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 273 ~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
+.-+..|.=++.+++... .+..+..+..|.++.|+.+|+.+ .-+.|+.|...+..+.-
T Consensus 336 ~~ikkEAcW~iSNItAG~----~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 336 ESIKKEACWTISNITAGN----QEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTS 393 (514)
T ss_pred hhHHHHHHHHHHHhhcCC----HHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcc
Confidence 345677889999999843 56778888999999999999976 57899999887775543
No 7
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.27 E-value=4.6e-10 Score=118.28 Aligned_cols=221 Identities=14% Similarity=0.126 Sum_probs=172.5
Q ss_pred cCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccC
Q 046820 77 TQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSA 156 (350)
Q Consensus 77 ~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~ 156 (350)
+++.+...-++.-|+.|+-- .+||..|.+.|+||.|+.++.+ + +..+++.++.+|+ |||.+++.+..+.+.
T Consensus 301 r~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s---~----~~~l~~~aLrlL~-NLSfd~~~R~~mV~~ 371 (708)
T PF05804_consen 301 RENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPS---E----NEDLVNVALRLLF-NLSFDPELRSQMVSL 371 (708)
T ss_pred CCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcC---C----CHHHHHHHHHHHH-HhCcCHHHHHHHHHC
Confidence 35667777788888888855 5799999999999999999962 2 3678999999999 999999999999999
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH--
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS-- 234 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~-- 234 (350)
|.++.|+.+|..++ .+..+..+|++||.+ +..+..++. .++|+.|++++-++.+++-..+++..+.||+...
T Consensus 372 GlIPkLv~LL~d~~--~~~val~iLy~LS~d---d~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn 445 (708)
T PF05804_consen 372 GLIPKLVELLKDPN--FREVALKILYNLSMD---DEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN 445 (708)
T ss_pred CCcHHHHHHhCCCc--hHHHHHHHHHHhccC---HhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence 99999999998654 567899999999975 378888966 7899999998876645555556677777775321
Q ss_pred ---------------------------------------------------------------HHHHHHHHHHhCCHhhH
Q 046820 235 ---------------------------------------------------------------ASALSVLDGICSTDCGR 251 (350)
Q Consensus 235 ---------------------------------------------------------------e~aL~vL~~L~~~~eGr 251 (350)
=.++++|.+|.-..-.-
T Consensus 446 aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~ 525 (708)
T PF05804_consen 446 AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDW 525 (708)
T ss_pred HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCH
Confidence 06888888887666677
Q ss_pred HHhhcCCCChHHHHHHHhccC--hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhc
Q 046820 252 ENANDKPLTMPVVVKKILRVS--ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVG 317 (350)
Q Consensus 252 ~ai~~~~~~v~~lv~~l~~~S--~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~ 317 (350)
+.++.+.+.+|-+.+.|..+. +.-.-.+|-++..+|.. +.+.....+.|.++.|+.+|..-
T Consensus 526 ~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-----~~~A~lL~~sgli~~Li~LL~~k 588 (708)
T PF05804_consen 526 AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-----PECAPLLAKSGLIPTLIELLNAK 588 (708)
T ss_pred HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-----HHHHHHHHhCChHHHHHHHHHhh
Confidence 778877888999988886553 22334466666667763 45777777999999999998653
No 8
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1e-09 Score=110.91 Aligned_cols=250 Identities=14% Similarity=0.097 Sum_probs=189.3
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCcc--ccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESES--NKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL 141 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~--nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~ 141 (350)
....++.+.+ .+.+.+..+..++|.+...... ....|. .|+||-+|.+|.. +. ++.++.+|..+|.
T Consensus 68 ~~~~~~~~~S----~~~~~q~~a~~~~rkllS~~~~ppi~~vi~-~G~v~~lV~~l~~--~~----~~~lq~eAAWaLT- 135 (514)
T KOG0166|consen 68 LELMLAALYS----DDPQQQLTATQAFRKLLSKERNPPIDEVIQ-SGVVPRLVEFLSR--DD----NPTLQFEAAWALT- 135 (514)
T ss_pred hHHHHHHHhC----CCHHHHHHHHHHHHHHHccCCCCCHHHHHH-cCcHHHHHHHHcc--CC----ChhHHHHHHHHHH-
Confidence 4455666655 3567788899999877654322 222344 4999999999962 21 3678999999999
Q ss_pred hCCCCh-hhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHH
Q 046820 142 LFPLEG-EALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTAT 220 (350)
Q Consensus 142 ~Ls~~~-e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~ 220 (350)
|++... +.-+.+.+.|+++.++++|.+.+.+.+++|+.+|-+++.+. +.++..+=. .|++++|+.++.....-.-.
T Consensus 136 nIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds--~~~Rd~vl~-~g~l~pLl~~l~~~~~~~~l 212 (514)
T KOG0166|consen 136 NIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS--PDCRDYVLS-CGALDPLLRLLNKSDKLSML 212 (514)
T ss_pred HHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC--hHHHHHHHh-hcchHHHHHHhccccchHHH
Confidence 887554 55567779999999999999999999999999999999765 578877635 89999999999876444577
Q ss_pred HHHHHHHHHhhhhH----------------------------HHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhcc
Q 046820 221 KAALVVIYHTIASS----------------------------ASALSVLDGICST-DCGRENANDKPLTMPVVVKKILRV 271 (350)
Q Consensus 221 k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~~ 271 (350)
+.+..+|.|||... ..|.-+|..|+.. .|.-..+ .+.|.+|.||+.|...
T Consensus 213 Rn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~v-i~~gvv~~LV~lL~~~ 291 (514)
T KOG0166|consen 213 RNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMV-IDAGVVPRLVDLLGHS 291 (514)
T ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH-HHccchHHHHHHHcCC
Confidence 88999999998521 2677778878754 4444444 5899999999988877
Q ss_pred ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 046820 272 SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLM 333 (350)
Q Consensus 272 S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l 333 (350)
+....--|+..+.++... ++...+.++..|+++.|..++...-....|+-|..++...
T Consensus 292 ~~~v~~PaLRaiGNIvtG----~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNI 349 (514)
T KOG0166|consen 292 SPKVVTPALRAIGNIVTG----SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNI 349 (514)
T ss_pred CcccccHHHhhccceeec----cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHh
Confidence 777776788888887774 4678888899999999988887544555667677666553
No 9
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.02 E-value=4.2e-08 Score=92.20 Aligned_cols=203 Identities=15% Similarity=0.106 Sum_probs=156.1
Q ss_pred hhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 046820 103 CIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLT 182 (350)
Q Consensus 103 ~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~ 182 (350)
.+-+++-...|+.+|.. .. ++.++|.|+.+|. +.+-.+.++.+|.+.|+++.+..+|...+...|+.|..+|.
T Consensus 7 ~~l~~~~l~~Ll~lL~~--t~----dp~i~e~al~al~-n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~ 79 (254)
T PF04826_consen 7 NILEAQELQKLLCLLES--TE----DPFIQEKALIALG-NSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALN 79 (254)
T ss_pred CCcCHHHHHHHHHHHhc--CC----ChHHHHHHHHHHH-hhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34567788999999973 22 4778999999999 88777789999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHhhhhchhhHHHHHHHHhcCC-CChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCCh
Q 046820 183 ELVSSDSDQRKVNVLSENEGAIEALFKLIEEP-ISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTM 261 (350)
Q Consensus 183 ~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~-~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v 261 (350)
+|+... ++...| ...|+.+.+.+.+. .+.....++ |.+|.+|+...+...-+. ..|
T Consensus 80 Nls~~~---en~~~I---k~~i~~Vc~~~~s~~lns~~Q~ag--------------LrlL~nLtv~~~~~~~l~---~~i 136 (254)
T PF04826_consen 80 NLSVND---ENQEQI---KMYIPQVCEETVSSPLNSEVQLAG--------------LRLLTNLTVTNDYHHMLA---NYI 136 (254)
T ss_pred hcCCCh---hhHHHH---HHHHHHHHHHHhcCCCCCHHHHHH--------------HHHHHccCCCcchhhhHH---hhH
Confidence 998763 677777 35677777655443 233344444 445555555555655553 469
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCCC
Q 046820 262 PVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRL 340 (350)
Q Consensus 262 ~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~~ 340 (350)
|.++.++..|+...+.++..+|++|+.+ .....+++...+++.++.+++...+...-..+-.+...+...|+..
T Consensus 137 ~~ll~LL~~G~~~~k~~vLk~L~nLS~n-----p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 137 PDLLSLLSSGSEKTKVQVLKVLVNLSEN-----PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccC-----HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 9999999999999999999999999986 3588999999999999999987654455566666666666666644
No 10
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=4.7e-08 Score=106.54 Aligned_cols=242 Identities=15% Similarity=0.141 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHh---ccc---cccccchHHHHHHHHHHHhhCCCCh-hhHhhc-c
Q 046820 83 CKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFES---FSK---TCLDENVSVLEEILSTLILLFPLEG-EALTHL-G 154 (350)
Q Consensus 83 ~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~---~~~---~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i-~ 154 (350)
.+.|+..|..++++ ++.|+.|.+.|++.++..||.- |+. ++ .....++.-|.-+|- ||-++| .||..+ .
T Consensus 315 lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd-~~~~aLRrYa~MALT-NLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 315 LCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETND-GECNALRRYAGMALT-NLTFGDVANKATLCS 391 (2195)
T ss_pred hHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhh-ccccccccchhhhhh
Confidence 35899999999986 7899999999999999888752 221 11 112235666888888 999988 678777 5
Q ss_pred cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh-
Q 046820 155 SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS- 233 (350)
Q Consensus 155 ~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~- 233 (350)
..|++++||..|.+...+--+--+.+|.+||=-.| ...|..+ +..|-+.+|+...-........|+-|.+|+||+-+
T Consensus 392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD-~nmKkvL-rE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHc 469 (2195)
T KOG2122|consen 392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRAD-SNMKKVL-RETGSVTALAACALRNKKESTLKAVLSALWNLSAHC 469 (2195)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHhcccccc-ccHHHHH-HhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcc
Confidence 68999999999999887888889999999985443 4667777 55788888886543322335789999999999532
Q ss_pred --H-------HHHHHH-----------------------HHH----HhCCHhhHHHhhcCCCChHHHHHHHhccChhHHH
Q 046820 234 --S-------ASALSV-----------------------LDG----ICSTDCGRENANDKPLTMPVVVKKILRVSELATE 277 (350)
Q Consensus 234 --~-------e~aL~v-----------------------L~~----L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E 277 (350)
| +-||++ |.+ +++|+.=|.-+ ...+|+..|+..|...|-..--
T Consensus 470 teNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQIL-R~~NCLq~LLQ~LKS~SLTiVS 548 (2195)
T KOG2122|consen 470 TENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQIL-RRHNCLQTLLQHLKSHSLTIVS 548 (2195)
T ss_pred cccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHH-HHhhHHHHHHHHhhhcceEEee
Confidence 2 123333 332 34455444433 4667777777777777777778
Q ss_pred HHHHHHHHHccccccchHHHHHHHH-hhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 278 LSVSILWKLCMNEKREEKTAFVEAL-QVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 278 ~Av~iL~~Lc~~~~~~~~~~~~~~~-~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
+|-++||||.-.++ +. ++|+ +.|+|+.|.-|+.+--..-+.--|..|..+|+.
T Consensus 549 NaCGTLWNLSAR~p----~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 549 NACGTLWNLSARSP----ED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred cchhhhhhhhcCCH----HH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 89999999988664 34 4555 999999999888865555566666666666654
No 11
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.84 E-value=9.9e-08 Score=91.49 Aligned_cols=246 Identities=15% Similarity=0.111 Sum_probs=177.0
Q ss_pred hHHHHHHHhHhhhccCChhHHHHHHHHHHHHH-hcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820 63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWA-KESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL 141 (350)
Q Consensus 63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~La-k~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~ 141 (350)
+...+.+++.+. |.+.+.+|+.+.|.+. ++..--=..+.++|.+|-+++++.+. . ..-.+=+|..+|-
T Consensus 72 elp~lt~~l~Sd----Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~--q----~~mlqfEAaWalT- 140 (526)
T COG5064 72 ELPQLTQQLFSD----DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI--Q----RDMLQFEAAWALT- 140 (526)
T ss_pred hhHHHHHHHhhh----HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc--c----hhHHHHHHHHHHh-
Confidence 455666667663 6788999999998765 44322333466799999999999621 1 1224556778888
Q ss_pred hCCCChhhH-hhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC-CChHH
Q 046820 142 LFPLEGEAL-THLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP-ISPTA 219 (350)
Q Consensus 142 ~Ls~~~e~k-~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~-~~~~a 219 (350)
|.+.+..++ +++++.|+++.++.+|.+++.+.|++|+.+|-+++.+. +.++..+=. .|++++|+.++.+. .+-.-
T Consensus 141 NiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS--~~~RD~vL~-~galeplL~ll~ss~~~ism 217 (526)
T COG5064 141 NIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDS--EGCRDYVLQ-CGALEPLLGLLLSSAIHISM 217 (526)
T ss_pred hhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCc--hhHHHHHHh-cCchHHHHHHHHhccchHHH
Confidence 887665444 45578999999999999999999999999999998664 477777645 79999999999865 34577
Q ss_pred HHHHHHHHHHhhhh-------H--H-------------------HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc
Q 046820 220 TKAALVVIYHTIAS-------S--A-------------------SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV 271 (350)
Q Consensus 220 ~k~Al~aL~~L~~~-------~--e-------------------~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~ 271 (350)
.+.+-..|.|||.- . . .|.=++.-|+..+.-+-.+.-+.|+.+-||+.|...
T Consensus 218 lRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~ 297 (526)
T COG5064 218 LRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE 297 (526)
T ss_pred HHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc
Confidence 88999999999841 1 1 455556666665433333334889999999999887
Q ss_pred ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHH
Q 046820 272 SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKAS 327 (350)
Q Consensus 272 S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~ 327 (350)
|..-+--|.....++...+ +...+..+.-|++..+..+|.+. -.+.|+-|.
T Consensus 298 sa~iqtPalR~vGNIVTG~----D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaC 348 (526)
T COG5064 298 SAKIQTPALRSVGNIVTGS----DDQTQVIINCGALKAFRSLLSSP-KENIRKEAC 348 (526)
T ss_pred cccccCHHHHhhcCeeecC----ccceehheecccHHHHHHHhcCh-hhhhhhhhh
Confidence 7766777778887887743 34556666889888877776643 345555443
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.71 E-value=2.4e-07 Score=96.74 Aligned_cols=197 Identities=17% Similarity=0.147 Sum_probs=155.2
Q ss_pred chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820 62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL 141 (350)
Q Consensus 62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~ 141 (350)
.+..+.+.-+.+. ++..|..|...|.-+++.+.+-|..+.+-|.||-|+.+|. +. +.+++.+|..+|.
T Consensus 233 ~~lpe~i~mL~~q----~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~---~~----~~evq~~acgaLR- 300 (717)
T KOG1048|consen 233 PTLPEVISMLMSQ----DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD---HR----NDEVQRQACGALR- 300 (717)
T ss_pred cccHHHHHHHhcc----ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc---CC----cHHHHHHHHHHHH-
Confidence 3455666666653 5567778999999999999999999999999999999997 33 4789999999999
Q ss_pred hCCCCh---hhHhhcccCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCC-
Q 046820 142 LFPLEG---EALTHLGSASSMGCMIWFLNS-GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPIS- 216 (350)
Q Consensus 142 ~Ls~~~---e~k~~i~~~~~l~~Lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~- 216 (350)
||..+. +||-.|.+-+.++.++++|+. ++.+.|++.+.+|-+|++.+ ..|..| ...+++.|-+-+-.+.+
T Consensus 301 NLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D---~lK~~i--i~~al~tLt~~vI~P~Sg 375 (717)
T KOG1048|consen 301 NLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND---ALKMLI--ITSALSTLTDNVIIPHSG 375 (717)
T ss_pred hhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh---HHHHHH--HHHHHHHHHHhhcccccc
Confidence 997544 688899999999999999997 79999999999999999873 677777 35777777765543211
Q ss_pred ------h------HHHHHHHHHHHHhhhhHHHHHHHHHHHhC-CHhhHHHhhcCCCChHHHHHHHhc------cChhHHH
Q 046820 217 ------P------TATKAALVVIYHTIASSASALSVLDGICS-TDCGRENANDKPLTMPVVVKKILR------VSELATE 277 (350)
Q Consensus 217 ------~------~a~k~Al~aL~~L~~~~e~aL~vL~~L~~-~~eGr~ai~~~~~~v~~lv~~l~~------~S~~~~E 277 (350)
+ .-.+ -+-..|.++.+ .+|+|+++....|.|-.|+-.+.. .++...|
T Consensus 376 w~~~~~~~~~~~~~vf~--------------n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VE 441 (717)
T KOG1048|consen 376 WEEEPAPRKAEDSTVFR--------------NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVE 441 (717)
T ss_pred cCCCCcccccccceeee--------------hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHH
Confidence 1 1112 34455566655 689999999999999999888752 3467889
Q ss_pred HHHHHHHHHccc
Q 046820 278 LSVSILWKLCMN 289 (350)
Q Consensus 278 ~Av~iL~~Lc~~ 289 (350)
++|.+|.+|...
T Consensus 442 NcvCilRNLSYr 453 (717)
T KOG1048|consen 442 NCVCILRNLSYR 453 (717)
T ss_pred HHHHHHhhcCch
Confidence 999999999764
No 13
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.64 E-value=4.7e-07 Score=73.27 Aligned_cols=117 Identities=15% Similarity=0.233 Sum_probs=95.1
Q ss_pred hhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHH
Q 046820 103 CIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLL 181 (350)
Q Consensus 103 ~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL 181 (350)
.+.+.|+++.|+.+|. ++ +..+++.++.+|. ++..+ ++....+.+.+.++.++.+|...+.+.+.+|+.+|
T Consensus 2 ~~~~~~~i~~l~~~l~---~~----~~~~~~~a~~~l~-~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L 73 (120)
T cd00020 2 AVIQAGGLPALVSLLS---SS----DENVQREAAWALS-NLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWAL 73 (120)
T ss_pred hHHHcCChHHHHHHHH---cC----CHHHHHHHHHHHH-HHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHH
Confidence 3567899999999996 22 3678999999998 77755 56666666789999999999999999999999999
Q ss_pred HHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q 046820 182 TELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTI 231 (350)
Q Consensus 182 ~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~ 231 (350)
.+|+... +.....+.. .|+++.|++++.++ +....+.++.+|.+||
T Consensus 74 ~~l~~~~--~~~~~~~~~-~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 74 RNLAAGP--EDNKLIVLE-AGGVPKLVNLLDSS-NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHccCc--HHHHHHHHH-CCChHHHHHHHhcC-CHHHHHHHHHHHHHhh
Confidence 9998764 355555534 79999999999876 6677777888887776
No 14
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.64 E-value=8.3e-07 Score=92.75 Aligned_cols=234 Identities=14% Similarity=0.118 Sum_probs=176.8
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCcc--ccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESES--NKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL 141 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~--nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~ 141 (350)
|..+|..+.+. ..+.+..|...||+|...+.. |+-.|.+.|.||.|+++|.. .. |.+++|++-.+|.
T Consensus 277 I~kLv~Ll~~~----~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~--t~----D~ev~e~iTg~LW- 345 (717)
T KOG1048|consen 277 IPKLVALLDHR----NDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRH--TQ----DDEVRELITGILW- 345 (717)
T ss_pred HHHHHHHhcCC----cHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHh--hc----chHHHHHHHHHHh-
Confidence 55566666654 457888999999999988776 99999999999999999972 22 4778888866666
Q ss_pred hCCCChhhHhhcccCCcHHHHHHHHc---c--CC---------HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHH
Q 046820 142 LFPLEGEALTHLGSASSMGCMIWFLN---S--GD---------LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEAL 207 (350)
Q Consensus 142 ~Ls~~~e~k~~i~~~~~l~~Lv~~L~---~--gs---------~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~L 207 (350)
||+-.|..|..|.. +++..|..-+- + +. .+.=.|++..|.++++.. ++.++.+.+..|.|.+|
T Consensus 346 NLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~--~eaR~~mr~c~GLIdaL 422 (717)
T KOG1048|consen 346 NLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAG--QEAREQMRECDGLIDAL 422 (717)
T ss_pred cccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchh--HHHHHHHhhccchHHHH
Confidence 99977766665432 23333333221 1 11 122248999999999865 48888998889999999
Q ss_pred HHHhc-----CCCChHHHHHHHHHHHHhhhhH------------------------------------------------
Q 046820 208 FKLIE-----EPISPTATKAALVVIYHTIASS------------------------------------------------ 234 (350)
Q Consensus 208 V~lL~-----~~~~~~a~k~Al~aL~~L~~~~------------------------------------------------ 234 (350)
+..++ +..+...+.+++-+|.||+..-
T Consensus 423 ~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~p 502 (717)
T KOG1048|consen 423 LFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIP 502 (717)
T ss_pred HHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCc
Confidence 99997 2346688999999999995310
Q ss_pred ----------------------------------HHHHHHHHHHhCC-----HhhHHHhhcCCCChHHHHHHHhccChhH
Q 046820 235 ----------------------------------ASALSVLDGICST-----DCGRENANDKPLTMPVVVKKILRVSELA 275 (350)
Q Consensus 235 ----------------------------------e~aL~vL~~L~~~-----~eGr~ai~~~~~~v~~lv~~l~~~S~~~ 275 (350)
|.+..+|.+|+.+ ..-|..+....-+.|++++++....+..
T Consensus 503 e~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~v 582 (717)
T KOG1048|consen 503 ERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDV 582 (717)
T ss_pred ccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchH
Confidence 5899999999876 4556677667888999999999999999
Q ss_pred HHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhc
Q 046820 276 TELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVG 317 (350)
Q Consensus 276 ~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~ 317 (350)
.+.+.++|.+|...-. ...+ +.-++++.|+..|...
T Consensus 583 v~s~a~~LrNls~d~r-----nk~l-igk~a~~~lv~~Lp~~ 618 (717)
T KOG1048|consen 583 VRSAAGALRNLSRDIR-----NKEL-IGKYAIPDLVRCLPGS 618 (717)
T ss_pred HHHHHHHHhhhccCch-----hhhh-hhcchHHHHHHhCcCC
Confidence 9999999999998542 4334 4478899999888644
No 15
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.61 E-value=7.4e-07 Score=72.09 Aligned_cols=117 Identities=20% Similarity=0.218 Sum_probs=92.2
Q ss_pred ccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 046820 154 GSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS 233 (350)
Q Consensus 154 ~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~ 233 (350)
.+.|.++.++.+|.+++.+.|..|+.+|.+++... +.....+-. .|+++.|++++.++ +++..+.|+.+|.+++.
T Consensus 4 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~-~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~- 78 (120)
T cd00020 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGN--NDNIQAVVE-AGGLPALVQLLKSE-DEEVVKAALWALRNLAA- 78 (120)
T ss_pred HHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC--HHHHHHHHH-CCChHHHHHHHhCC-CHHHHHHHHHHHHHHcc-
Confidence 35689999999999999999999999999999764 255555524 69999999999976 66776766666666653
Q ss_pred HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcc
Q 046820 234 SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCM 288 (350)
Q Consensus 234 ~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~ 288 (350)
............|.++.+++.+...+...+++|..+|.+||.
T Consensus 79 -------------~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 -------------GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred -------------CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 222233333467899999999988888999999999999983
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.55 E-value=6.8e-06 Score=77.33 Aligned_cols=197 Identities=15% Similarity=0.115 Sum_probs=142.9
Q ss_pred CCcchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHH
Q 046820 59 VCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILST 138 (350)
Q Consensus 59 ~~~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~ 138 (350)
+++.++..++.-|... .|+..+..++-.+-..+ ..+.|+..|.+.|+++.+..+|. .+ ++.+++.|+.+
T Consensus 9 l~~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~---~p----~~~vr~~AL~a 77 (254)
T PF04826_consen 9 LEAQELQKLLCLLEST---EDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLN---DP----NPSVREKALNA 77 (254)
T ss_pred cCHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcC---CC----ChHHHHHHHHH
Confidence 3456788888888764 36778888888888865 45799999999999999999996 22 47789999999
Q ss_pred HHhhCCCChhhHhhcccCCcHHHHHHHHccC--CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCC
Q 046820 139 LILLFPLEGEALTHLGSASSMGCMIWFLNSG--DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPIS 216 (350)
Q Consensus 139 L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~ 216 (350)
|. ||+.+.+|+..|.. .++.+.....++ +.+....+..+|.+|+-.. ++...+ .+.|+.|+.+|..| +
T Consensus 78 L~-Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~---~~~~~l---~~~i~~ll~LL~~G-~ 147 (254)
T PF04826_consen 78 LN-NLSVNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN---DYHHML---ANYIPDLLSLLSSG-S 147 (254)
T ss_pred HH-hcCCChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc---chhhhH---HhhHHHHHHHHHcC-C
Confidence 99 99988888877742 577777766665 5677788999999998553 566666 35799999999987 4
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc-ChhHHHHHHHHHHHHccccc
Q 046820 217 PTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV-SELATELSVSILWKLCMNEK 291 (350)
Q Consensus 217 ~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~-S~~~~E~Av~iL~~Lc~~~~ 291 (350)
...+-- +|++|-+|+..+.-..+++ .+.+.+.++.++.+. +...--.++.+.-+|..+-+
T Consensus 148 ~~~k~~--------------vLk~L~nLS~np~~~~~Ll-~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 148 EKTKVQ--------------VLKVLVNLSENPDMTRELL-SAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred hHHHHH--------------HHHHHHHhccCHHHHHHHH-hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 444444 4555555555555445554 345677887655443 34456777777777866543
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00014 Score=70.12 Aligned_cols=230 Identities=12% Similarity=0.203 Sum_probs=165.5
Q ss_pred ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChh----------
Q 046820 79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGE---------- 148 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e---------- 148 (350)
+.+..+..+.-++.-+-.++.||..+.+.|+.|.+...|. +++ ...+..++..++. .|-.+|+
T Consensus 160 ~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~--~~g----k~~~VRel~~a~r-~l~~dDDiRV~fg~ah~ 232 (461)
T KOG4199|consen 160 SEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLN--REG----KTRTVRELYDAIR-ALLTDDDIRVVFGQAHG 232 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHc--ccC----ccHHHHHHHHHHH-HhcCCCceeeecchhhH
Confidence 3345566777788888888999999999999999998885 233 1234444445555 3333442
Q ss_pred hHhhcccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHH
Q 046820 149 ALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVI 227 (350)
Q Consensus 149 ~k~~i~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL 227 (350)
.-+.|+..+.+..|++.|+-| ++..=..+..+|..|+-. +++|..|.+ .|.+..|++++.+.+. +..+
T Consensus 233 hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr---~E~C~~I~e-~GGl~tl~~~i~d~n~-~~~r------ 301 (461)
T KOG4199|consen 233 HARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR---DEICKSIAE-SGGLDTLLRCIDDSNE-QGNR------ 301 (461)
T ss_pred HHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH---HHHHHHHHH-ccCHHHHHHHHhhhch-hhHH------
Confidence 233555566899999999988 777777888899999854 377888866 8999999999987533 3333
Q ss_pred HHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhhc
Q 046820 228 YHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV--SELATELSVSILWKLCMNEKREEKTAFVEALQVG 305 (350)
Q Consensus 228 ~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~--S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G 305 (350)
..+..++.+|..|++.+.-+..|+ +.|+.+.++..+.+. +|.--+.+..++.-||-..++ .-..+++.|
T Consensus 302 ----~l~k~~lslLralAG~DsvKs~IV-~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pd----hsa~~ie~G 372 (461)
T KOG4199|consen 302 ----TLAKTCLSLLRALAGSDSVKSTIV-EKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPD----HSAKAIEAG 372 (461)
T ss_pred ----HHHHHHHHHHHHHhCCCchHHHHH-HhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcc----hHHHHHhcc
Confidence 123578899999999999999996 788899999999885 467778888888888987763 455666777
Q ss_pred hHHHHHHHHHhcC-chHHHHHHHHHHHHHHh
Q 046820 306 AFQKLLVLLQVGC-AERTKEKASEVLKLMNL 335 (350)
Q Consensus 306 ~v~~LL~llq~~~-t~~ak~kA~~LLk~l~~ 335 (350)
+-.-.+.-|..-. -...++.|..++|.+-.
T Consensus 373 ~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 373 AADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred hHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 6555555554321 23566777777777754
No 18
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.31 E-value=3.5e-05 Score=74.31 Aligned_cols=233 Identities=15% Similarity=0.099 Sum_probs=161.8
Q ss_pred hHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhcccCCcH
Q 046820 81 VGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGSASSM 159 (350)
Q Consensus 81 ~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~~l 159 (350)
-.+.+|.-.|-++++.....-+.++++|++|.++.+|.+ + +.++.|.++.+|- |..=+. ..+..+-.-|++
T Consensus 130 mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s--~-----~~~V~eQavWALG-NiAGDS~~~RD~vL~~gal 201 (526)
T COG5064 130 MLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS--T-----EDDVREQAVWALG-NIAGDSEGCRDYVLQCGAL 201 (526)
T ss_pred HHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC--c-----hHHHHHHHHHHhc-cccCCchhHHHHHHhcCch
Confidence 456789999999999888888889999999999999962 2 3568999999999 887444 568888888999
Q ss_pred HHHHHHHccCC--HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh-HH-
Q 046820 160 GCMIWFLNSGD--LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS-SA- 235 (350)
Q Consensus 160 ~~Lv~~L~~gs--~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~-~e- 235 (350)
+++..+|.+.. ..-=.||..+|-+|.....-+..-..| ..++|.|.+|+... ++.-.-||..+|..|+.- +|
T Consensus 202 eplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i---sqalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~ 277 (526)
T COG5064 202 EPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI---SQALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEK 277 (526)
T ss_pred HHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH---HHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHH
Confidence 99999998763 455568999999997543112222234 57899999999866 778889999999888642 22
Q ss_pred --------------------------HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccc
Q 046820 236 --------------------------SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMN 289 (350)
Q Consensus 236 --------------------------~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~ 289 (350)
-+|....++.+-.+-...+....|+++++-.+|..-...-+..|-=.+.++-.
T Consensus 278 i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA- 356 (526)
T COG5064 278 IQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA- 356 (526)
T ss_pred HHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc-
Confidence 45566666665444444444566666666555433222222222222333322
Q ss_pred cccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHH
Q 046820 290 EKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVL 330 (350)
Q Consensus 290 ~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LL 330 (350)
++-+..+..+....++.|..+|.+- .-+.|+-|..-+
T Consensus 357 ---Gnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAi 393 (526)
T COG5064 357 ---GNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAI 393 (526)
T ss_pred ---CCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHH
Confidence 3345667777999999999888865 456666665443
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.30 E-value=1.5e-05 Score=87.76 Aligned_cols=245 Identities=15% Similarity=0.099 Sum_probs=168.2
Q ss_pred HHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHh---------cccccc--ccchHHHHH
Q 046820 66 EINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFES---------FSKTCL--DENVSVLEE 134 (350)
Q Consensus 66 ~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~---------~~~~~~--~~~~~~~e~ 134 (350)
.+++.+.... .++-+.+..|=.+|.++....+..++-=.+.-+.++|=.+... .+.+.+ +.+..-+-.
T Consensus 239 LLvQilH~~d-~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lca 317 (2195)
T KOG2122|consen 239 LLVQILHGPD-DEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCA 317 (2195)
T ss_pred HHHHHhhCCc-hhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHH
Confidence 3444443322 1244555667777877776655433333333344444433221 011100 122223446
Q ss_pred HHHHHHhhCCCChhhHhhcccCCcHHHHHHHHcc-----C-------CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhh
Q 046820 135 ILSTLILLFPLEGEALTHLGSASSMGCMIWFLNS-----G-------DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEG 202 (350)
Q Consensus 135 Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~-----g-------s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g 202 (350)
|+-+|. -+++++|.++.+-+-|.|+.|..+|.- | ...-|.+|..+|.+|.-.+ ..+|..+....|
T Consensus 318 A~~~lM-K~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGD--v~NKa~LCs~rg 394 (2195)
T KOG2122|consen 318 ALCTLM-KLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGD--VANKATLCSQRG 394 (2195)
T ss_pred HHHHHH-HhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccccc--ccchhhhhhhhh
Confidence 888888 699999999998888999999887743 2 3567889999999998553 478998888899
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhh---hH---------------------------HHHHHHHHHHhC-CHhhH
Q 046820 203 AIEALFKLIEEPISPTATKAALVVIYHTIA---SS---------------------------ASALSVLDGICS-TDCGR 251 (350)
Q Consensus 203 ~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~---~~---------------------------e~aL~vL~~L~~-~~eGr 251 (350)
+|+.+|..|.+. +.....--..+|.||+= .| ...|.+|=||+. |-|.+
T Consensus 395 fMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK 473 (2195)
T KOG2122|consen 395 FMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK 473 (2195)
T ss_pred HHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence 999999999764 22455555667777741 00 367888999977 78999
Q ss_pred HHhhcCCCChHHHHHHHhccCh----hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh
Q 046820 252 ENANDKPLTMPVVVKKILRVSE----LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV 316 (350)
Q Consensus 252 ~ai~~~~~~v~~lv~~l~~~S~----~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~ 316 (350)
++|+...|++..||.+|..-++ .--|+|-+||.+|..+-++ .+.+++...+..-++.||..|-+
T Consensus 474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt-~E~yRQILR~~NCLq~LLQ~LKS 541 (2195)
T KOG2122|consen 474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIAT-CEDYRQILRRHNCLQTLLQHLKS 541 (2195)
T ss_pred hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhc-cchHHHHHHHhhHHHHHHHHhhh
Confidence 9999999999999999875432 3469999999999887663 34566666788888888888754
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.15 E-value=0.0025 Score=65.79 Aligned_cols=245 Identities=16% Similarity=0.157 Sum_probs=171.2
Q ss_pred ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCc
Q 046820 79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASS 158 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~ 158 (350)
++..+.-+++.|.+++.+++.--..+.+.++++.++.+|. ++ +.++.+.|+.+|. .+.-.+..-..+..++.
T Consensus 90 ~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~---~~----d~~Va~~A~~~L~-~l~~~~~~~~~l~~~~~ 161 (503)
T PF10508_consen 90 SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR---DP----DLSVAKAAIKALK-KLASHPEGLEQLFDSNL 161 (503)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc---CC----cHHHHHHHHHHHH-HHhCCchhHHHHhCcch
Confidence 5567777899999999888776777888899999999996 33 4778899999998 56544444445556667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH----
Q 046820 159 MGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS---- 234 (350)
Q Consensus 159 l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~---- 234 (350)
+..|..++.+.+...|.....++-.+++.. ++....+-. .|+++.+++-|.++ +.=.+.+++..|..|+...
T Consensus 162 ~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S--~~~~~~~~~-sgll~~ll~eL~~d-DiLvqlnalell~~La~~~~g~~ 237 (503)
T PF10508_consen 162 LSKLKSLMSQSSDIVRCRVYELLVEIASHS--PEAAEAVVN-SGLLDLLLKELDSD-DILVQLNALELLSELAETPHGLQ 237 (503)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcC--HHHHHHHHh-ccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHcChhHHH
Confidence 999999998877778888888999998765 355555534 79999999999874 6667788999999886421
Q ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Q 046820 235 ----------------------------------------------------------------------ASALSVLDGI 244 (350)
Q Consensus 235 ----------------------------------------------------------------------e~aL~vL~~L 244 (350)
..|+.+|+.+
T Consensus 238 yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~i 317 (503)
T PF10508_consen 238 YLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQI 317 (503)
T ss_pred HHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 2789999999
Q ss_pred hCCHhhHHHh-hcCCCChHHHHHHHhc----cChhHHHHHHHHHHHHcccccc-chHHH---HHH---HHhhchHHHHHH
Q 046820 245 CSTDCGRENA-NDKPLTMPVVVKKILR----VSELATELSVSILWKLCMNEKR-EEKTA---FVE---ALQVGAFQKLLV 312 (350)
Q Consensus 245 ~~~~eGr~ai-~~~~~~v~~lv~~l~~----~S~~~~E~Av~iL~~Lc~~~~~-~~~~~---~~~---~~~~G~v~~LL~ 312 (350)
+++.+|+..+ ..+...+..+++.+.. ++..-+-.+...|.++-....+ .++.. ... .+..+-...++.
T Consensus 318 gst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~ 397 (503)
T PF10508_consen 318 GSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLM 397 (503)
T ss_pred hCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHH
Confidence 9999999999 6667778888887764 3334567777777777443322 11111 111 111222221222
Q ss_pred HHHhcCchHHHHHHHHHHHHHHh
Q 046820 313 LLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 313 llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
-+-...=+..|--|-.+|+.+..
T Consensus 398 ~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 398 SLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HHhcCCchHHHHHHHHHHHHHhc
Confidence 22223226778887777776655
No 21
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.93 E-value=1.2e-06 Score=66.71 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.8
Q ss_pred ccccccccccCCcccCCCCCCcccCCccc
Q 046820 22 KETGASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 22 ~~~~~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
..-...+||+|||+++ +|+||||++|+
T Consensus 6 ~CpIt~~lM~dPVi~~--~G~tyer~~I~ 32 (73)
T PF04564_consen 6 LCPITGELMRDPVILP--SGHTYERSAIE 32 (73)
T ss_dssp B-TTTSSB-SSEEEET--TSEEEEHHHHH
T ss_pred CCcCcCcHhhCceeCC--cCCEEcHHHHH
Confidence 3456789999999999 99999999998
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.00086 Score=67.43 Aligned_cols=202 Identities=14% Similarity=0.127 Sum_probs=139.8
Q ss_pred ccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHH
Q 046820 98 ESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNA 177 (350)
Q Consensus 98 ~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~A 177 (350)
.+|+..|.+.|.|.-|+.++.. . +++.....+..|+ |||.+...+..++..|-+|-++.+|.+.+. +.-|
T Consensus 335 ~eNK~~M~~~~iveKL~klfp~---~----h~dL~~~tl~Llf-NlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA 404 (791)
T KOG1222|consen 335 DENKIVMEQNGIVEKLLKLFPI---Q----HPDLRKATLMLLF-NLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIA 404 (791)
T ss_pred ccchHHHHhccHHHHHHHhcCC---C----CHHHHHHHHHHhh-hccccccccHHHhhccchHHHHHHhCCccc--chhh
Confidence 5899999999999999999851 2 4667777888888 999988888888899999999999987643 3458
Q ss_pred HHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH-----------------------
Q 046820 178 VLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS----------------------- 234 (350)
Q Consensus 178 a~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~----------------------- 234 (350)
...|+.+|.++ ..|...+- .++|+-|.+.+-.+.+.+-..+-+..-.|||.+.
T Consensus 405 ~~~lYh~S~dD---~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~ 480 (791)
T KOG1222|consen 405 LNMLYHLSCDD---DAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSR 480 (791)
T ss_pred hhhhhhhccCc---HHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhccc
Confidence 99999998763 78888844 8999999987766533333232232334665421
Q ss_pred ------------------------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccC
Q 046820 235 ------------------------------------------ASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVS 272 (350)
Q Consensus 235 ------------------------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S 272 (350)
=.||++|++|.-.+--=+.|+....-||-+=..+..+-
T Consensus 481 D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga 560 (791)
T KOG1222|consen 481 DLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGA 560 (791)
T ss_pred chHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCc
Confidence 06778888887766566667666666776655554332
Q ss_pred hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh
Q 046820 273 ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV 316 (350)
Q Consensus 273 ~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~ 316 (350)
...+.-..+...+..... +..+......+|++..|..+||+
T Consensus 561 -~eddLvL~~vi~~GT~a~--d~~cA~Lla~a~~i~tlieLL~a 601 (791)
T KOG1222|consen 561 -DEDDLVLQIVIACGTMAR--DLDCARLLAPAKLIDTLIELLQA 601 (791)
T ss_pred -cchhhhhHHHHHhhhhhh--hhHHHHHhCccccHHHHHHHHHh
Confidence 222333333333333222 24566666688999999999975
No 23
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.002 Score=67.94 Aligned_cols=244 Identities=13% Similarity=0.184 Sum_probs=170.2
Q ss_pred cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820 61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI 140 (350)
Q Consensus 61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~ 140 (350)
...|..|+.++.++. =.+++..|++.|+.+++.. |..+. +-+.++|+..|.. + .-+++...-++.+++
T Consensus 21 aETI~kLcDRvessT---L~eDRR~A~rgLKa~srkY---R~~Vg-a~Gmk~li~vL~~---D--~~D~E~ik~~LdTl~ 88 (970)
T KOG0946|consen 21 AETIEKLCDRVESST---LLEDRRDAVRGLKAFSRKY---REEVG-AQGMKPLIQVLQR---D--YMDPEIIKYALDTLL 88 (970)
T ss_pred HhHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHHH---HHHHH-HcccHHHHHHHhh---c--cCCHHHHHHHHHHHH
Confidence 456888888887753 2578999999999999864 54444 4347888898862 2 125778888888888
Q ss_pred hhCCCCh------hhH-----------hhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhH
Q 046820 141 LLFPLEG------EAL-----------THLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGA 203 (350)
Q Consensus 141 ~~Ls~~~------e~k-----------~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~ 203 (350)
-+++-+| +.+ ..|...+.|.+++..+..-+...|..|+.+|.+|.+.-+ .+.+..|-..|-.
T Consensus 89 il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~-~e~q~~ll~~P~g 167 (970)
T KOG0946|consen 89 ILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP-TELQDALLVSPMG 167 (970)
T ss_pred HHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC-HHHHHHHHHCchh
Confidence 3334332 112 144578899999999999999999999999999987654 4555555466889
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhhh--------------------------------HHHHHHHHHHHhCCHhhH
Q 046820 204 IEALFKLIEEPISPTATKAALVVIYHTIAS--------------------------------SASALSVLDGICSTDCGR 251 (350)
Q Consensus 204 i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~--------------------------------~e~aL~vL~~L~~~~eGr 251 (350)
|..|+.+|+|...| -..+|+-.|..|+-. .+.||.+|-+|....-..
T Consensus 168 IS~lmdlL~DsrE~-IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN 246 (970)
T KOG0946|consen 168 ISKLMDLLRDSREP-IRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN 246 (970)
T ss_pred HHHHHHHHhhhhhh-hchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch
Confidence 99999999986433 445566666666421 169999999999988888
Q ss_pred HHhhcCCCChHHHHHHHhc---c-------Chh---HHHHHHHHHHHHccccccc--hHHHHHHHHhhchHHHHHHHHHh
Q 046820 252 ENANDKPLTMPVVVKKILR---V-------SEL---ATELSVSILWKLCMNEKRE--EKTAFVEALQVGAFQKLLVLLQV 316 (350)
Q Consensus 252 ~ai~~~~~~v~~lv~~l~~---~-------S~~---~~E~Av~iL~~Lc~~~~~~--~~~~~~~~~~~G~v~~LL~llq~ 316 (350)
..+..+.+-||.+.+++-. + ++. +--.|.-++..+..-+-+. ...+...+.+.+.+..|+.++-.
T Consensus 247 Q~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~ 326 (970)
T KOG0946|consen 247 QNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMH 326 (970)
T ss_pred hhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcC
Confidence 8888899999999987632 1 221 1223444444444432211 12344566688999999988876
Q ss_pred cC
Q 046820 317 GC 318 (350)
Q Consensus 317 ~~ 318 (350)
.|
T Consensus 327 ~~ 328 (970)
T KOG0946|consen 327 PG 328 (970)
T ss_pred CC
Confidence 65
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.70 E-value=0.0092 Score=61.62 Aligned_cols=227 Identities=14% Similarity=0.121 Sum_probs=155.3
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
+..+++.+... +.+.+++.++..-....+. .+...-+.+...|. .. +.+..+.+..+|-..|
T Consensus 5 ~~~~l~~l~~~------~~~~~~L~~l~~~~~~~~~-----l~~~~~~~lf~~L~---~~----~~e~v~~~~~iL~~~l 66 (503)
T PF10508_consen 5 INELLEELSSK------AERLEALPELKTELSSSPF-----LERLPEPVLFDCLN---TS----NREQVELICDILKRLL 66 (503)
T ss_pred HHHHHHHHhcc------cchHHHHHHHHHHHhhhhH-----HHhchHHHHHHHHh---hc----ChHHHHHHHHHHHHHH
Confidence 45566666653 4577888888765443331 11222233666665 22 2344455555555333
Q ss_pred CCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHH
Q 046820 144 PLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAA 223 (350)
Q Consensus 144 s~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~A 223 (350)
.-.+ -... .++..+.+...|.+.+...|..++..|..+.... ......+.. .++++.++..++++. ..
T Consensus 67 ~~~~-~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~--~~~~~~~~~-~~l~~~i~~~L~~~d-~~----- 134 (503)
T PF10508_consen 67 SALS-PDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS--EGAAQLLVD-NELLPLIIQCLRDPD-LS----- 134 (503)
T ss_pred hccC-HHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC--HHHHHHhcC-ccHHHHHHHHHcCCc-HH-----
Confidence 3111 1111 3457788888999999999999999999988654 244555644 899999999998773 22
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHh
Q 046820 224 LVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQ 303 (350)
Q Consensus 224 l~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~ 303 (350)
..+.|..+|..|+.+++|-+.+. ++..+..+...+...++..+=.+..++..+++.+ ++.......
T Consensus 135 ---------Va~~A~~~L~~l~~~~~~~~~l~-~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S----~~~~~~~~~ 200 (503)
T PF10508_consen 135 ---------VAKAAIKALKKLASHPEGLEQLF-DSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS----PEAAEAVVN 200 (503)
T ss_pred ---------HHHHHHHHHHHHhCCchhHHHHh-CcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC----HHHHHHHHh
Confidence 23577888888888888998886 5555888888777767777777888999999876 346666678
Q ss_pred hchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 304 VGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 304 ~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
.|.+++++..+..+ -.-.|-.|-++|.-|..
T Consensus 201 sgll~~ll~eL~~d-DiLvqlnalell~~La~ 231 (503)
T PF10508_consen 201 SGLLDLLLKELDSD-DILVQLNALELLSELAE 231 (503)
T ss_pred ccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHc
Confidence 89999999888764 45688898888888766
No 25
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=1.3e-05 Score=73.91 Aligned_cols=36 Identities=33% Similarity=0.515 Sum_probs=30.7
Q ss_pred hhhhcCCcccccc-ccccccCCcccCCCCCCcccCCccc
Q 046820 13 HARKEQPARKETG-ASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 13 ~~~~~~~~~~~~~-~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
.+-+|+|+..--. ..+||+|||+.+ +||||||..|+
T Consensus 203 rk~rEvpd~lcgkIt~el~~~pvi~p--sgIty~ra~I~ 239 (284)
T KOG4642|consen 203 RKKREVPDYLCGKITLELMREPVITP--SGITYDRADIE 239 (284)
T ss_pred hccccccchhhhhhhHHhhcCCccCc--cccchhHHHHH
Confidence 3567999987544 459999999999 99999999988
No 26
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.55 E-value=0.0079 Score=58.13 Aligned_cols=222 Identities=14% Similarity=0.157 Sum_probs=131.4
Q ss_pred HHHHHHHHhcCccccchhhcc---CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcc------cCC
Q 046820 87 VAKIKEWAKESESNKSCIVDN---AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLG------SAS 157 (350)
Q Consensus 87 l~~L~~Lak~s~~nR~~i~~a---Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~------~~~ 157 (350)
+..|+.+-+.+..+|.-+.+. +.+..++.+|.... . +.++...++..+.-+++.+++....+. ...
T Consensus 31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~-~----~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~ 105 (312)
T PF03224_consen 31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLS-S----NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSD 105 (312)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHH--------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH-
T ss_pred HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHcc-C----cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccch
Confidence 344455555445555444443 46788888887431 1 356778888877755554443333221 123
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA 237 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a 237 (350)
....+..+|.+++......|+.+|-.|....+ ...... ..++++.+++.+++..+... +....-+
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~--~~~~~~--~~~~l~~ll~~L~~~l~~~~-----------~~~~~~a 170 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGP--KRSEKL--VKEALPKLLQWLSSQLSSSD-----------SELQYIA 170 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTT--T--HHH--HHHHHHHHHHHHH-TT-HHH-----------H---HHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC--ccccch--HHHHHHHHHHHHHHhhcCCC-----------cchHHHH
Confidence 68888889999999999999999999986643 111111 14788889998886422100 0011578
Q ss_pred HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHh-----cc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHH
Q 046820 238 LSVLDGICSTDCGRENANDKPLTMPVVVKKIL-----RV--SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKL 310 (350)
Q Consensus 238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~-----~~--S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~L 310 (350)
+..|..|...++-|..+. +.++++.++..+. .. ..+-.-++.-++|.|.-. ++...++.+.+.|+.|
T Consensus 171 v~~L~~LL~~~~~R~~f~-~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-----~~~~~~~~~~~~i~~L 244 (312)
T PF03224_consen 171 VQCLQNLLRSKEYRQVFW-KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE-----PEIAEELNKKYLIPLL 244 (312)
T ss_dssp HHHHHHHHTSHHHHHHHH-THHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS-----HHHHHHHHTTSHHHHH
T ss_pred HHHHHHHhCcchhHHHHH-hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC-----HHHHHHHhccchHHHH
Confidence 888999999999999997 5899999999772 22 236688999999999874 4588889999999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHH
Q 046820 311 LVLLQVGCAERTKEKASEVLKLMN 334 (350)
Q Consensus 311 L~llq~~~t~~ak~kA~~LLk~l~ 334 (350)
+.+++..--++.-|-+-..|+.|-
T Consensus 245 ~~i~~~~~KEKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 245 ADILKDSIKEKVVRVSLAILRNLL 268 (312)
T ss_dssp HHHHHH--SHHHHHHHHHHHHHTT
T ss_pred HHHHHhcccchHHHHHHHHHHHHH
Confidence 988886533444455444444443
No 27
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.00087 Score=67.42 Aligned_cols=197 Identities=18% Similarity=0.223 Sum_probs=134.5
Q ss_pred hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhh
Q 046820 63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL 142 (350)
Q Consensus 63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~ 142 (350)
++..+-++++..... .+..-..|+.-|-++|.+ .+.---|..-..|..||..|.. . +.+..-..+..|. -
T Consensus 261 e~dr~~kklk~~~~K-QeqLLrva~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr--~-----n~~Ll~lv~~FLk-K 330 (791)
T KOG1222|consen 261 EIDRLNKKLKTAIRK-QEQLLRVAVYLLLNLAED-ISVELKMRRKNIVAMLVKALDR--S-----NSSLLTLVIKFLK-K 330 (791)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcc--c-----chHHHHHHHHHHH-H
Confidence 455555555543210 011223466666777744 2333346666788899999962 1 2556666777777 7
Q ss_pred CCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHH
Q 046820 143 FPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKA 222 (350)
Q Consensus 143 Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~ 222 (350)
||+.+|||..+...+.++.|+++....+++-+.-...+|++||-+. .++..+-. .|.+|.|+.+|.+.... ..
T Consensus 331 LSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~---glr~KMv~-~GllP~l~~ll~~d~~~---~i 403 (791)
T KOG1222|consen 331 LSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS---GLRPKMVN-GGLLPHLASLLDSDTKH---GI 403 (791)
T ss_pred hhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc---cccHHHhh-ccchHHHHHHhCCcccc---hh
Confidence 9999999999999999999999999999999999999999999664 45554435 79999999999876332 24
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHH-HHHccccc
Q 046820 223 ALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSIL-WKLCMNEK 291 (350)
Q Consensus 223 Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL-~~Lc~~~~ 291 (350)
|+..||+++ - .+--.++..-..||+.+.+.++.++...-..++-.| .++|-+.+
T Consensus 404 A~~~lYh~S--------------~-dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR 458 (791)
T KOG1222|consen 404 ALNMLYHLS--------------C-DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR 458 (791)
T ss_pred hhhhhhhhc--------------c-CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc
Confidence 556666664 2 333445556778999999999988765444444333 56776554
No 28
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0031 Score=66.68 Aligned_cols=151 Identities=15% Similarity=0.187 Sum_probs=121.4
Q ss_pred CcHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhc-CCCChHHHHHHHHHHHHhhhhH
Q 046820 157 SSMGCMIWFLNSGD-LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE-EPISPTATKAALVVIYHTIASS 234 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs-~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~-~~~~~~a~k~Al~aL~~L~~~~ 234 (350)
..|+.|+.=+.+.+ ++-|.+|+..|+.+| ..|++.+|. -.+++|++.|. |..++..++.++.+++++..+.
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~s-----rkYR~~Vga--~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFS-----RKYREEVGA--QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHH-----HHHHHHHHH--cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 35667777676664 788999999999998 379999976 45689999987 4468899999999999996431
Q ss_pred ---------------------------------------------HHHHHHHHHHhCC--HhhHHHhhcCCCChHHHHHH
Q 046820 235 ---------------------------------------------ASALSVLDGICST--DCGRENANDKPLTMPVVVKK 267 (350)
Q Consensus 235 ---------------------------------------------e~aL~vL~~L~~~--~eGr~ai~~~~~~v~~lv~~ 267 (350)
..+..+|..|.+| .|-+.++..+|.+|..+|..
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 2788899998776 68888999999999999998
Q ss_pred HhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcC
Q 046820 268 ILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGC 318 (350)
Q Consensus 268 l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~ 318 (350)
|...-..-+-.|+-.|..|.+.++ .+....+=+++|..|+.++.-.|
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n~----~IQKlVAFENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDNS----SIQKLVAFENAFERLFSIIEEEG 221 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccCc----hHHHHHHHHHHHHHHHHHHHhcC
Confidence 877666667778888888988654 46666668899999999997544
No 29
>PF05536 Neurochondrin: Neurochondrin
Probab=97.45 E-value=0.005 Score=64.17 Aligned_cols=167 Identities=15% Similarity=0.153 Sum_probs=107.7
Q ss_pred HhhcccCCcHHHHHHHHccC-------CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHH
Q 046820 150 LTHLGSASSMGCMIWFLNSG-------DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKA 222 (350)
Q Consensus 150 k~~i~~~~~l~~Lv~~L~~g-------s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~ 222 (350)
++.|-+.=..+++-++|++| ...-+.-|+.+|..++.. ++....= .--+-||.|++++.++.+...
T Consensus 43 ~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~---~~~a~~~-~~~~~IP~Lle~l~~~s~~~~--- 115 (543)
T PF05536_consen 43 RRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRD---PELASSP-QMVSRIPLLLEILSSSSDLET--- 115 (543)
T ss_pred HHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCC---hhhhcCH-HHHHHHHHHHHHHHcCCchhH---
Confidence 33444544578888999985 245566788888888764 2332110 125789999999987643222
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHH
Q 046820 223 ALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEAL 302 (350)
Q Consensus 223 Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~ 302 (350)
.+.|+.+|..++++++|+.++. +.|+|+.+++.+.. .+...|.|..+|.+++...+. .... -
T Consensus 116 -----------v~dalqcL~~Ias~~~G~~aLl-~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~---~~~~--~ 177 (543)
T PF05536_consen 116 -----------VDDALQCLLAIASSPEGAKALL-ESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQ---KSWA--E 177 (543)
T ss_pred -----------HHHHHHHHHHHHcCcHhHHHHH-hcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcch---hhhh--h
Confidence 3467777777788899999997 67999999998877 777899999999999986531 1111 1
Q ss_pred hhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCCCC
Q 046820 303 QVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRLE 341 (350)
Q Consensus 303 ~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~~~ 341 (350)
..-.+..++.-++..-+......+-+++.+|..+-...|
T Consensus 178 ~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~ 216 (543)
T PF05536_consen 178 DSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSP 216 (543)
T ss_pred hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCC
Confidence 111222333333333223334446667888877665444
No 30
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.089 Score=51.27 Aligned_cols=253 Identities=14% Similarity=0.139 Sum_probs=151.5
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
+.+.+.+|+.+.. +-.++.-+-+..+..-+|.+-..|-.-.++|+.+.+..++.. ..+ .+..++-.++.+|. .+
T Consensus 61 i~~~~~~i~e~i~-~~~~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~l-a~~---~~~~~l~ksL~al~-~l 134 (461)
T KOG4199|consen 61 INETVDKIKEHIG-QKLEETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLEL-AES---PNESVLKKSLEAIN-SL 134 (461)
T ss_pred HHHhHHHHHHHHH-hhhHHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHH-hhC---CchhHHHHHHHHHH-Hh
Confidence 6666666665432 112233333333433333333344444567999999998873 222 24567888888887 23
Q ss_pred CCChhhHhhcccCCcHHHHHHHHccCC--HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820 144 PLEGEALTHLGSASSMGCMIWFLNSGD--LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK 221 (350)
Q Consensus 144 s~~~e~k~~i~~~~~l~~Lv~~L~~gs--~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k 221 (350)
- +...-+-+..++..++.+|.... .+.--.....+..-...+ +.++..+-+ .++.+.+.+.|......+.++
T Consensus 135 t---~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h--E~nrQ~~m~-~~il~Li~~~l~~~gk~~~VR 208 (461)
T KOG4199|consen 135 T---HKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH--EVNRQLFME-LKILELILQVLNREGKTRTVR 208 (461)
T ss_pred h---cCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh--HHHHHHHHH-hhHHHHHHHHHcccCccHHHH
Confidence 2 22233445568888899887642 222112222222222222 467777656 788888886665433446777
Q ss_pred HHHHHHHHhhhhH--------------------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHH
Q 046820 222 AALVVIYHTIASS--------------------------------------ASALSVLDGICSTDCGRENANDKPLTMPV 263 (350)
Q Consensus 222 ~Al~aL~~L~~~~--------------------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~ 263 (350)
..-.++..|.... -.....|..|+--.|-..+|. +.||+..
T Consensus 209 el~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~-e~GGl~t 287 (461)
T KOG4199|consen 209 ELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIA-ESGGLDT 287 (461)
T ss_pred HHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHH-HccCHHH
Confidence 7777776664210 156677888888888888995 8999999
Q ss_pred HHHHHhcc-ChhHHHH---HHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh-cCchHHHHHHHHHHHHHH
Q 046820 264 VVKKILRV-SELATEL---SVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV-GCAERTKEKASEVLKLMN 334 (350)
Q Consensus 264 lv~~l~~~-S~~~~E~---Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~-~~t~~ak~kA~~LLk~l~ 334 (350)
|++.|... .+..++. +.+.|..|..+ +++....++.|+.+++..++.. ..+|..-+.+...+-.+.
T Consensus 288 l~~~i~d~n~~~~r~l~k~~lslLralAG~-----DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~ 358 (461)
T KOG4199|consen 288 LLRCIDDSNEQGNRTLAKTCLSLLRALAGS-----DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILC 358 (461)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhCC-----CchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 99999774 3444444 45555555543 4688899999999998877732 235666666555555554
No 31
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.016 Score=56.53 Aligned_cols=187 Identities=13% Similarity=0.151 Sum_probs=127.7
Q ss_pred CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCC
Q 046820 78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSAS 157 (350)
Q Consensus 78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~ 157 (350)
.|.+++..|+..|..++.. -.|-.-|...|+..+|+.+|. ++ +..+++.|..++-...+.++..+..+.+.+
T Consensus 95 ~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~---~~----~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~ 166 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLE---NS----DAELRELAARVIGTAVQNNPKSQEQVIELG 166 (342)
T ss_pred CCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhc---CC----cHHHHHHHHHHHHHHHhcCHHHHHHHHHcc
Confidence 5788999999999999965 467777888888888888886 33 477899999998865555556666777888
Q ss_pred cHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC-CChHHHHHHHHHHHHhhhhHH
Q 046820 158 SMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP-ISPTATKAALVVIYHTIASSA 235 (350)
Q Consensus 158 ~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~-~~~~a~k~Al~aL~~L~~~~e 235 (350)
+++.|...|.+. +..+|.+|..++.+|-.... +....-. ..+| ...|.+++.++ .+.+.+.-++..+-.|...
T Consensus 167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~-~g~~~fl-~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~-- 241 (342)
T KOG2160|consen 167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNK-PGQDEFL-KLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQE-- 241 (342)
T ss_pred cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCc-HHHHHHH-hcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHh--
Confidence 999999999876 67888999999999976542 2222223 3345 78899999875 4666666555555444321
Q ss_pred HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccc
Q 046820 236 SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMN 289 (350)
Q Consensus 236 ~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~ 289 (350)
.---..+...-+....++..+........|+|+..++.+-..
T Consensus 242 ------------~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 242 ------------DKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred ------------hhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 111111332333333444444455677889999888776553
No 32
>PRK09687 putative lyase; Provisional
Probab=97.33 E-value=0.04 Score=52.66 Aligned_cols=180 Identities=14% Similarity=0.073 Sum_probs=102.5
Q ss_pred chHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCC
Q 046820 109 AVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSD 188 (350)
Q Consensus 109 ai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~ 188 (350)
++|.|..++. .+ .+..++..|+.+|- .+..... .-.+.+++.+...+...+...|..|+..|-.
T Consensus 91 a~~~L~~l~~--~D----~d~~VR~~A~~aLG-~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~----- 154 (280)
T PRK09687 91 VFNILNNLAL--ED----KSACVRASAINATG-HRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSV----- 154 (280)
T ss_pred HHHHHHHHHh--cC----CCHHHHHHHHHHHh-ccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhc-----
Confidence 5666776642 12 24678888888887 3421110 0112345556666666677777777776632
Q ss_pred CchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCC--HhhHHHh------hcCCCC
Q 046820 189 SDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICST--DCGRENA------NDKPLT 260 (350)
Q Consensus 189 ~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~--~eGr~ai------~~~~~~ 260 (350)
++. +.+++.|+.+|.++ ++.-...|..+|-++....+.+...|..+..- ++-|.+. ..+..+
T Consensus 155 --------~~~-~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~a 224 (280)
T PRK09687 155 --------IND-EAAIPLLINLLKDP-NGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRV 224 (280)
T ss_pred --------cCC-HHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhH
Confidence 223 56778888888766 55666777777777643223333333332221 1111110 135567
Q ss_pred hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHH
Q 046820 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLK 331 (350)
Q Consensus 261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk 331 (350)
||.|++.+..+.. .-.|+.+|..+.. .-+++.|..+++....++.+.||.+-|+
T Consensus 225 v~~Li~~L~~~~~--~~~a~~ALg~ig~---------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 225 LSVLIKELKKGTV--GDLIIEAAGELGD---------------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHcCCch--HHHHHHHHHhcCC---------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 7888887765442 2345555544332 1257777777765557899999988765
No 33
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.00 E-value=0.11 Score=52.08 Aligned_cols=247 Identities=8% Similarity=0.085 Sum_probs=137.0
Q ss_pred ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhcccCC
Q 046820 79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGSAS 157 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~ 157 (350)
|.+...+.-+.|.+.+.++.+||..+-+.|.-..++.+|+.+-.-+...+.+...-+-..|. |-.++. +.+.-+++.|
T Consensus 100 d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~-Ny~l~~~~l~aq~~~~g 178 (604)
T KOG4500|consen 100 DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLH-NYILDSRELRAQVADAG 178 (604)
T ss_pred cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHH-HhhCCcHHHHHHHHhcc
Confidence 55667788899999999999999999999998888898875421110122334444555666 666665 5566777899
Q ss_pred cHHHHHHHHccC--CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh------------------
Q 046820 158 SMGCMIWFLNSG--DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP------------------ 217 (350)
Q Consensus 158 ~l~~Lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~------------------ 217 (350)
.++.++..+.-| +.+.-+....-.++|.+... +...+.- ....+...|++++.....+
T Consensus 179 Vl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~-e~~~~~~-~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~ 256 (604)
T KOG4500|consen 179 VLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC-EMLYPFC-KDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL 256 (604)
T ss_pred cHHHHHHHhhcccccHHHHHHHHhccccHHHHHH-Hhhhhhh-ccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc
Confidence 999998888765 33333333333344432211 1112222 1244555666666532211
Q ss_pred ---HHHHHH-HHHHHHhhhh------HHHHHHHHHH-------HhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHH
Q 046820 218 ---TATKAA-LVVIYHTIAS------SASALSVLDG-------ICSTDCGRENANDKPLTMPVVVKKILRVSELATELSV 280 (350)
Q Consensus 218 ---~a~k~A-l~aL~~L~~~------~e~aL~vL~~-------L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av 280 (350)
+..+++ +..+++|... .+.++..+.. |.+-+|.-..+...+-.+.-++.-+........--++
T Consensus 257 Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~ 336 (604)
T KOG4500|consen 257 VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGS 336 (604)
T ss_pred eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHH
Confidence 111222 3444444432 2344444433 3333444444533332233333333333333344455
Q ss_pred HHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh----cCchHHHHHHHHHHHHH
Q 046820 281 SILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV----GCAERTKEKASEVLKLM 333 (350)
Q Consensus 281 ~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~----~~t~~ak~kA~~LLk~l 333 (350)
=++.+..+. +.....+++.|.+.+|+.+|.. +|.-+.+.-+-.-||.|
T Consensus 337 LaigNfaR~-----D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl 388 (604)
T KOG4500|consen 337 LAIGNFARR-----DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNL 388 (604)
T ss_pred HHHHhhhcc-----chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhc
Confidence 556666664 3467788999999999998853 44455555544444433
No 34
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.92 E-value=0.064 Score=51.79 Aligned_cols=211 Identities=15% Similarity=0.175 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHHHHhcCccccchhhcc------CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcc
Q 046820 81 VGCKDLVAKIKEWAKESESNKSCIVDN------AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLG 154 (350)
Q Consensus 81 ~~~~~Al~~L~~Lak~s~~nR~~i~~a------Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~ 154 (350)
+...-.+.-|-.+..+++.....+.+. ....+++.++. .+ +..+++.|..+|..++.-++......
T Consensus 72 d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~---~~----D~~i~~~a~~iLt~Ll~~~~~~~~~~- 143 (312)
T PF03224_consen 72 DTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD---RN----DSFIQLKAAFILTSLLSQGPKRSEKL- 143 (312)
T ss_dssp HHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S----S----SHHHHHHHHHHHHHHHTSTTT--HHH-
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc---CC----CHHHHHHHHHHHHHHHHcCCccccch-
Confidence 344457777778888877655555542 13455555553 22 46678888888874444333211110
Q ss_pred cCCcHHHHHHHHccC----CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 046820 155 SASSMGCMIWFLNSG----DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHT 230 (350)
Q Consensus 155 ~~~~l~~Lv~~L~~g----s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L 230 (350)
..+.++.++..|++- +.+....|+..|.+|... +.++..+-+ .+.++.|+.+++.. ...........+|++
T Consensus 144 ~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~---~~~R~~f~~-~~~v~~l~~iL~~~-~~~~~~~~~Ql~Y~~ 218 (312)
T PF03224_consen 144 VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS---KEYRQVFWK-SNGVSPLFDILRKQ-ATNSNSSGIQLQYQA 218 (312)
T ss_dssp HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS---HHHHHHHHT-HHHHHHHHHHHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc---chhHHHHHh-cCcHHHHHHHHHhh-cccCCCCchhHHHHH
Confidence 034677777777763 334457889999999866 488888866 89999999999321 001112223344433
Q ss_pred hhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHH
Q 046820 231 IASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV-SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQK 309 (350)
Q Consensus 231 ~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~-S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~ 309 (350)
+-++=.|+-.++....+..+. .||.+++.+... .+...--++++|.|++....+ .....|+..|+.+
T Consensus 219 -------ll~lWlLSF~~~~~~~~~~~~-~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~---~~~~~mv~~~~l~- 286 (312)
T PF03224_consen 219 -------LLCLWLLSFEPEIAEELNKKY-LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK---SNIELMVLCGLLK- 286 (312)
T ss_dssp -------HHHHHHHTTSHHHHHHHHTTS-HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST---THHHHHHHH-HHH-
T ss_pred -------HHHHHHHhcCHHHHHHHhccc-hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH---HHHHHHHHccHHH-
Confidence 234445566677888886544 899999988664 467788899999999987642 3788888887666
Q ss_pred HHHHHHh
Q 046820 310 LLVLLQV 316 (350)
Q Consensus 310 LL~llq~ 316 (350)
++..|+.
T Consensus 287 ~l~~L~~ 293 (312)
T PF03224_consen 287 TLQNLSE 293 (312)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 5666653
No 35
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.91 E-value=0.00021 Score=52.19 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.5
Q ss_pred ccccccccCCcccCCCCCCcccCCccc
Q 046820 24 TGASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 24 ~~~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
-..+++|+|||+++ +|++|+|++|+
T Consensus 5 pi~~~~~~~Pv~~~--~G~v~~~~~i~ 29 (63)
T smart00504 5 PISLEVMKDPVILP--SGQTYERRAIE 29 (63)
T ss_pred cCCCCcCCCCEECC--CCCEEeHHHHH
Confidence 34679999999999 99999999987
No 36
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.79 E-value=0.0023 Score=42.71 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=36.5
Q ss_pred hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 046820 147 GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELV 185 (350)
Q Consensus 147 ~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls 185 (350)
++++..|.+.|+++.|+.+|++++.+.+.+|+.+|.+|+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 578888889999999999999999999999999999997
No 37
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.75 E-value=0.00082 Score=44.91 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=33.5
Q ss_pred CccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 97 SESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 97 s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
+++|+..|.+.|++|.|+.+|. ++ +.+++++|+.+|. ||
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~---~~----~~~v~~~a~~al~-nl 39 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK---SP----DPEVQEEAAWALG-NL 39 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT---SS----SHHHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHcccHHHHHHHHc---CC----CHHHHHHHHHHHH-HH
Confidence 4688999999999999999997 32 4789999999998 65
No 38
>PRK09687 putative lyase; Provisional
Probab=96.74 E-value=0.14 Score=48.97 Aligned_cols=152 Identities=13% Similarity=0.031 Sum_probs=98.3
Q ss_pred chHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCC
Q 046820 109 AVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSD 188 (350)
Q Consensus 109 ai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~ 188 (350)
-++.|..+|. +. +..++..|+..|. .+. ....++.+..++++.+...|..|+.+|-.|....
T Consensus 24 ~~~~L~~~L~---d~----d~~vR~~A~~aL~-~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~ 85 (280)
T PRK09687 24 NDDELFRLLD---DH----NSLKRISSIRVLQ-LRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAK 85 (280)
T ss_pred cHHHHHHHHh---CC----CHHHHHHHHHHHH-hcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Confidence 4678888885 22 4678888888887 332 3457888889899999999999999999885321
Q ss_pred CchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh----HHHHHHHHHHHhCC--HhhHHHhh------c
Q 046820 189 SDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS----SASALSVLDGICST--DCGRENAN------D 256 (350)
Q Consensus 189 ~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~----~e~aL~vL~~L~~~--~eGr~ai~------~ 256 (350)
.. ...+++.|..++.+..++.-...|..+|.+++.. ...++..|..+... .+-|.... .
T Consensus 86 ---~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 86 ---RC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN 156 (280)
T ss_pred ---cc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC
Confidence 10 1467788888855444677777889999888632 22333333222211 11111111 2
Q ss_pred CCCChHHHHHHHhccChhHHHHHHHHHHHHc
Q 046820 257 KPLTMPVVVKKILRVSELATELSVSILWKLC 287 (350)
Q Consensus 257 ~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc 287 (350)
...+|+.|+..+...++..+..|+..|..++
T Consensus 157 ~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 157 DEAAIPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 4556888888887766667777777777663
No 39
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.17 Score=49.38 Aligned_cols=175 Identities=19% Similarity=0.165 Sum_probs=116.0
Q ss_pred chHHHHHHHHHHHhhCCCCh-hhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHH
Q 046820 128 NVSVLEEILSTLILLFPLEG-EALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEA 206 (350)
Q Consensus 128 ~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~ 206 (350)
+.+-.+.|+.-|.. +- .+ +|-.-+..-|.+..++..|++++.+.|..|+.+|-+.+... +...+.+-+ .|+.+.
T Consensus 96 ~le~ke~ald~Le~-lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNN--P~~Qe~v~E-~~~L~~ 170 (342)
T KOG2160|consen 96 DLEDKEDALDNLEE-LV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNN--PKSQEQVIE-LGALSK 170 (342)
T ss_pred CHHHHHHHHHHHHH-HH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcC--HHHHHHHHH-cccHHH
Confidence 34455666666552 21 11 34344456678888888999999999999999999999876 466666545 789999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhc--cChhHHHHHHHHHH
Q 046820 207 LFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILR--VSELATELSVSILW 284 (350)
Q Consensus 207 LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~--~S~~~~E~Av~iL~ 284 (350)
|+.++....+-..+..|+-|+++|..++ +-|-..+. ...+..+|.+.|-+ .+.+.+-.|+..+.
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~-------------~~g~~~fl-~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~ 236 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNN-------------KPGQDEFL-KLNGYQVLRDVLQSNNTSVKLKRKALFLLS 236 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcC-------------cHHHHHHH-hcCCHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 9999986655566677777777776544 34667776 44558888888877 46678888888888
Q ss_pred HHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHH
Q 046820 285 KLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKA 326 (350)
Q Consensus 285 ~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA 326 (350)
.|-..... ... .+..-.|+..+..+.+......++.|
T Consensus 237 ~Ll~~~~s----~~d-~~~~~~f~~~~~~l~~~l~~~~~e~~ 273 (342)
T KOG2160|consen 237 LLLQEDKS----DED-IASSLGFQRVLENLISSLDFEVNEAA 273 (342)
T ss_pred HHHHhhhh----hhh-HHHHhhhhHHHHHHhhccchhhhHHH
Confidence 87774432 222 33333344455555443333334433
No 40
>PF05536 Neurochondrin: Neurochondrin
Probab=96.70 E-value=0.025 Score=59.03 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=113.1
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCc-hhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH
Q 046820 156 ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSD-QRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS 234 (350)
Q Consensus 156 ~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~-~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~ 234 (350)
+..++..+.+|++.+.+.|.-+..++.++....+. ...+..|-+.-| +..|-+||+.+..|... +--...
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~--------~~~~~~ 74 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDC--------PPEEYL 74 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCC--------CHHHHH
Confidence 34677888899998989999999999999765431 122323433334 47777888875332111 111123
Q ss_pred HHHHHHHHHHhCCHhhHHHhhcCC---CChHHHHHHHhccCh-hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHH
Q 046820 235 ASALSVLDGICSTDCGRENANDKP---LTMPVVVKKILRVSE-LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKL 310 (350)
Q Consensus 235 e~aL~vL~~L~~~~eGr~ai~~~~---~~v~~lv~~l~~~S~-~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~L 310 (350)
..|+++|..+|+-++-. .|+ +.||.+++.+...+. ...+.|..+|..++.+. +-.+..++.|+++.|
T Consensus 75 ~LavsvL~~f~~~~~~a----~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-----~G~~aLl~~g~v~~L 145 (543)
T PF05536_consen 75 SLAVSVLAAFCRDPELA----SSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-----EGAKALLESGAVPAL 145 (543)
T ss_pred HHHHHHHHHHcCChhhh----cCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-----HhHHHHHhcCCHHHH
Confidence 57888888888855332 233 468999999999887 88999999999999542 355666799999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 311 LVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 311 L~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
+..+.. .+..++.|..+|-.+-.
T Consensus 146 ~ei~~~--~~~~~E~Al~lL~~Lls 168 (543)
T PF05536_consen 146 CEIIPN--QSFQMEIALNLLLNLLS 168 (543)
T ss_pred HHHHHh--CcchHHHHHHHHHHHHH
Confidence 998886 46788998888877654
No 41
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=96.67 E-value=0.21 Score=50.20 Aligned_cols=201 Identities=14% Similarity=0.019 Sum_probs=132.3
Q ss_pred HHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC
Q 046820 65 LEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP 144 (350)
Q Consensus 65 ~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls 144 (350)
.+++.++.+ .|...+.-+.-.|.++++.+ .+...+++.|++.-|+++|..-+.- +.+.+.|-.++++|. ||.
T Consensus 318 ~~~~sw~~S----~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~~v--dgnV~~qhA~lsALR-nl~ 389 (604)
T KOG4500|consen 318 DFLESWFRS----DDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEKDV--DGNVERQHACLSALR-NLM 389 (604)
T ss_pred HHHHHHhcC----CchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCC--CccchhHHHHHHHHH-hcc
Confidence 344444444 34455666666899999874 7778899999999999999621111 456788899999999 999
Q ss_pred CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchh-HHhhhhchhhHHHHHHHHhcCCCChHHHHHH
Q 046820 145 LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQR-KVNVLSENEGAIEALFKLIEEPISPTATKAA 223 (350)
Q Consensus 145 ~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~-~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~A 223 (350)
++.-||..+...|..+.+...|+..++.....-..+|.-+--. ++ ....+|..+..|+-||+--+++...--.-.+
T Consensus 390 IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~---qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gES 466 (604)
T KOG4500|consen 390 IPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDS---QEYIACELAKNPELFEKLVDWSKSPDFAGVAGES 466 (604)
T ss_pred ccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhc---hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhh
Confidence 9999999998999999999999988665555445555544322 23 4556777789999999998876443223333
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcc
Q 046820 224 LVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCM 288 (350)
Q Consensus 224 l~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~ 288 (350)
.+.|..|..+.. ...---.+ -..|+|...|.+...-.-..++-|+-+|..+..
T Consensus 467 nRll~~lIkHs~-----------~kdv~~tv-pksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 467 NRLLLGLIKHSK-----------YKDVILTV-PKSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred hHHHHHHHHhhH-----------hhhhHhhc-cccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 444444432110 00111122 255678888887766555556666666665544
No 42
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.061 Score=57.64 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=104.2
Q ss_pred cHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh---
Q 046820 158 SMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS--- 233 (350)
Q Consensus 158 ~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~--- 233 (350)
-+..|+.=|+.. +......|+.=|+++.... +++....+ -..-+||.||.||++..+...+..|.++|++||..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mg-nEesLs~f-pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMG-NEESLSGF-PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhc-chhhhccc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 344444444443 4444555666666654332 13444444 34789999999999988899999999999999852
Q ss_pred --------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHc
Q 046820 234 --------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLC 287 (350)
Q Consensus 234 --------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc 287 (350)
.|.+|.+|+.|+. .++++-+ .+|++.+++..+.=-|-.++-.|++|-.|.|
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR-~H~~AiL--~AG~l~a~LsylDFFSi~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR-RHPKAIL--QAGALSAVLSYLDFFSIHAQRVALAIAANCC 322 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh-hccHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1789999999998 4566544 7899999999887788889999999999999
Q ss_pred cccccchHHHHHHHHhhchHHHHHHHHH
Q 046820 288 MNEKREEKTAFVEALQVGAFQKLLVLLQ 315 (350)
Q Consensus 288 ~~~~~~~~~~~~~~~~~G~v~~LL~llq 315 (350)
+.=.+++-..+-++ +|-|.-+||
T Consensus 323 ksi~sd~f~~v~ea-----lPlL~~lLs 345 (1051)
T KOG0168|consen 323 KSIRSDEFHFVMEA-----LPLLTPLLS 345 (1051)
T ss_pred hcCCCccchHHHHH-----HHHHHHHHh
Confidence 97765433333333 454444454
No 43
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.089 Score=56.45 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=118.9
Q ss_pred chHHHHHHHHHHHhhCCCCh-hhHhhcccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHH
Q 046820 128 NVSVLEEILSTLILLFPLEG-EALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIE 205 (350)
Q Consensus 128 ~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~ 205 (350)
++..|-+|+.-|..+|++.. +....+.-...++.||.+|+.. ..+.-.+|+++|.+|..+-+ .....+=. +++||
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP--~S~a~vV~-~~aIP 257 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP--RSSAIVVD-EHAIP 257 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc--chhheeec-ccchH
Confidence 45567778888877787665 4444554556899999999987 78999999999999987653 44444424 78999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhhh-------------------------HHHHHHHHHHHhCC--HhhHHHhhcCC
Q 046820 206 ALFKLIEEPISPTATKAALVVIYHTIAS-------------------------SASALSVLDGICST--DCGRENANDKP 258 (350)
Q Consensus 206 ~LV~lL~~~~~~~a~k~Al~aL~~L~~~-------------------------~e~aL~vL~~L~~~--~eGr~ai~~~~ 258 (350)
.|+.-|..=.+-..-.-+|.+|--++.. -+.||++-.|.|.. .+--.-+ .
T Consensus 258 vl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v---~ 334 (1051)
T KOG0168|consen 258 VLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV---M 334 (1051)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH---H
Confidence 9997665332344445556666655421 15788888888874 2111112 2
Q ss_pred CChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHH
Q 046820 259 LTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLL 314 (350)
Q Consensus 259 ~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~ll 314 (350)
.++|.|-.++..-..+.-|++...+..+...... .+...++..+.|.+...-.+|
T Consensus 335 ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h-~~~kLdql~s~dLi~~~~qLl 389 (1051)
T KOG0168|consen 335 EALPLLTPLLSYQDKKPIESVCICLTRIADGFQH-GPDKLDQLCSHDLITNIQQLL 389 (1051)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc-ChHHHHHHhchhHHHHHHHHH
Confidence 4567777766666778888888888887654432 245666666666555444443
No 44
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.4 Score=52.88 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=94.7
Q ss_pred HHH-HHHHHHHHHhcCccccchhhc----cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCC
Q 046820 83 CKD-LVAKIKEWAKESESNKSCIVD----NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSAS 157 (350)
Q Consensus 83 ~~~-Al~~L~~Lak~s~~nR~~i~~----aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~ 157 (350)
+.+ +|..|+++.+.++.--..+.. .|..+.+..+|.+- . +..++.-++.++. .+.-..+...-|++.+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~--~----~~~iq~LaL~Vi~-~~Tan~~Cv~~~a~~~ 1813 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR--K----HPKLQILALQVIL-LATANKECVTDLATCN 1813 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc--C----CchHHHHHHHHHH-HHhcccHHHHHHHhhh
Confidence 443 888999999888743333222 37788888888732 2 3567888888887 4544446666777888
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHT 230 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L 230 (350)
.+-.|..+|.+ -+..|+-+.-+|+.|++.. +..++.+ . +|++.-+..++-...+++-.-.|...|-.+
T Consensus 1814 vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~--~i~keA~-~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl 1881 (2235)
T KOG1789|consen 1814 VLTTLLTLLHS-QPSMRARVLDVLYALSSNG--QIGKEAL-E-HGGLMYILSILCLTNSDQQRAQAAELLAKL 1881 (2235)
T ss_pred HHHHHHHHHhc-ChHHHHHHHHHHHHHhcCc--HHHHHHH-h-cCchhhhhHHHhccCcHHHHHHHHHHHHHh
Confidence 99999999987 4567888999999999874 4667666 4 677777777777665665555555544444
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.30 E-value=0.82 Score=50.65 Aligned_cols=78 Identities=21% Similarity=0.070 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCc
Q 046820 79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASS 158 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~ 158 (350)
|+..+..|+..|..+. ..+++|.|+.+|. ++ +..++..|+.+|.. +. + ....
T Consensus 634 d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~---D~----d~~VR~~Aa~aL~~-l~--~-------~~~~ 685 (897)
T PRK13800 634 DPGVRRTAVAVLTETT-----------PPGFGPALVAALG---DG----AAAVRRAAAEGLRE-LV--E-------VLPP 685 (897)
T ss_pred CHHHHHHHHHHHhhhc-----------chhHHHHHHHHHc---CC----CHHHHHHHHHHHHH-HH--h-------ccCc
Confidence 4555666666655542 2457888888885 32 46788888888762 31 0 0012
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHH
Q 046820 159 MGCMIWFLNSGDLSRRRNAVLLLTEL 184 (350)
Q Consensus 159 l~~Lv~~L~~gs~~~r~~Aa~lL~~L 184 (350)
.+.+...|.+.+...|..|+..|-.+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRAL 711 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 24455556666666666666555443
No 46
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=95.85 E-value=0.11 Score=44.55 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=89.9
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
+..||.+.... .+.+.+.+.+..|.++|-+ +.|-..+.+..+....+.-|. .. +....|-++..|. |+
T Consensus 18 lq~LV~efq~t---t~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~---e~----ne~LvefgIgglC-Nl 85 (173)
T KOG4646|consen 18 LQHLVDEFQTT---TNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLE---EQ----NELLVEFGIGGLC-NL 85 (173)
T ss_pred HHHHHHHHHHh---ccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhh---cc----cHHHHHHhHHHHH-hh
Confidence 55667766554 4678888899999999976 789999999999999888885 33 4566788999999 99
Q ss_pred CCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhc
Q 046820 144 PLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVS 186 (350)
Q Consensus 144 s~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~ 186 (350)
-.+..|++.|.+.+.++.++.+|.+.....-.+|+..|..|+-
T Consensus 86 C~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~ 128 (173)
T KOG4646|consen 86 CLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEF 128 (173)
T ss_pred ccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcC
Confidence 8888999999999999999999988766666677777777763
No 47
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.62 E-value=0.098 Score=39.93 Aligned_cols=87 Identities=22% Similarity=0.260 Sum_probs=63.1
Q ss_pred hHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Q 046820 110 VSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDS 189 (350)
Q Consensus 110 i~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~ 189 (350)
||.|+..|.. + .+..++..|+.+|. .+ .+ +.+++.|+.+|++.++..|..|+..|..+
T Consensus 1 i~~L~~~l~~--~----~~~~vr~~a~~~L~-~~--~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----- 58 (88)
T PF13646_consen 1 IPALLQLLQN--D----PDPQVRAEAARALG-EL--GD--------PEAIPALIELLKDEDPMVRRAAARALGRI----- 58 (88)
T ss_dssp HHHHHHHHHT--S----SSHHHHHHHHHHHH-CC--TH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHhc--C----CCHHHHHHHHHHHH-Hc--CC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh-----
Confidence 6888998841 2 25778899988888 23 22 24799999999988999999988887754
Q ss_pred chhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHH
Q 046820 190 DQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVI 227 (350)
Q Consensus 190 ~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL 227 (350)
|. +.+++.|.+++.++.+..-...|..+|
T Consensus 59 --------~~-~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 59 --------GD-PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp --------HH-HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred --------CC-HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 34 678899999998875543345556554
No 48
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.50 E-value=1.2 Score=44.46 Aligned_cols=171 Identities=15% Similarity=0.089 Sum_probs=113.8
Q ss_pred HHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHcc
Q 046820 89 KIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNS 168 (350)
Q Consensus 89 ~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~ 168 (350)
.|-.+-++.+.-|.-+.-.-+.+-+..++- ++ +.++.-.++.++.+.+. +.+..+.+..-+.--.++..|..
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL--~~-----~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~ 77 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLL--SD-----SKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDR 77 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHC--CC-----cHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcc
Confidence 445555666655555444444555554332 12 26788888899874333 44555555555555667777776
Q ss_pred C--CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhC
Q 046820 169 G--DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICS 246 (350)
Q Consensus 169 g--s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~ 246 (350)
. ...+|++|..++..+..... ....+ . .|++..+|.+..+. +.+-...++.+|..++..+
T Consensus 78 ~~~~~~ER~QALkliR~~l~~~~---~~~~~-~-~~vvralvaiae~~-~D~lr~~cletL~El~l~~------------ 139 (371)
T PF14664_consen 78 DNKNDVEREQALKLIRAFLEIKK---GPKEI-P-RGVVRALVAIAEHE-DDRLRRICLETLCELALLN------------ 139 (371)
T ss_pred cCCChHHHHHHHHHHHHHHHhcC---CcccC-C-HHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhC------------
Confidence 5 57899999999999986531 22235 3 79999999999875 4456666666666654321
Q ss_pred CHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcccc
Q 046820 247 TDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNE 290 (350)
Q Consensus 247 ~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~ 290 (350)
-+++.+.||+.++++.+..++....|..+.+++.+-...
T Consensus 140 -----P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 140 -----PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP 178 (371)
T ss_pred -----HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc
Confidence 245568899999999998887678888888888887754
No 49
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=95.41 E-value=0.033 Score=36.25 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=34.7
Q ss_pred hhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 046820 148 EALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELV 185 (350)
Q Consensus 148 e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls 185 (350)
+++..+.+.|+++.|+.+|.+++.+.+.+|+.+|.+|+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 56777788899999999999999999999999999986
No 50
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=94.96 E-value=0.034 Score=36.23 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=32.2
Q ss_pred ccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC
Q 046820 98 ESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP 144 (350)
Q Consensus 98 ~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls 144 (350)
+.++..+.+.|++|.|+.+|. .+ +.++++.++.+|. |++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~---~~----~~~i~~~a~~aL~-nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLK---SE----DEEVVKEAAWALS-NLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HHc
Confidence 348889999999999999996 22 3678999999998 764
No 51
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=94.90 E-value=0.17 Score=43.40 Aligned_cols=121 Identities=13% Similarity=0.167 Sum_probs=90.6
Q ss_pred chHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHH
Q 046820 128 NVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEAL 207 (350)
Q Consensus 128 ~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~L 207 (350)
+.+.+|..++-|. |+.-++-|=..+...++++..+..|...+-.-++.+..-|++|..+ ..+++.| ...+.+|..
T Consensus 30 ~~eakeqv~ANLA-NFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d---~~n~~~I-~ea~g~pli 104 (173)
T KOG4646|consen 30 NIEAKEQVTANLA-NFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD---KTNAKFI-REALGLPLI 104 (173)
T ss_pred cHHHHHHHHHHHH-hhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC---hHHHHHH-HHhcCCceE
Confidence 5778899999998 9998887777887889999999999998888999999999999865 4677777 336777888
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccC
Q 046820 208 FKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVS 272 (350)
Q Consensus 208 V~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S 272 (350)
+..+.++ ....+..|+.+|+.|+..++ .-|.++. -|++|+.|.+.+
T Consensus 105 i~~lssp-~e~tv~sa~~~l~~l~~~~R-------------t~r~ell-----~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 105 IFVLSSP-PEITVHSAALFLQLLEFGER-------------TERDELL-----SPAVVRTVQRWR 150 (173)
T ss_pred EeecCCC-hHHHHHHHHHHHHHhcCccc-------------chhHHhc-----cHHHHHHHHHHH
Confidence 8888765 23455666667777664321 1233343 478888887654
No 52
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.66 E-value=0.22 Score=37.92 Aligned_cols=85 Identities=26% Similarity=0.369 Sum_probs=57.1
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820 159 MGCMIWFL-NSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA 237 (350)
Q Consensus 159 l~~Lv~~L-~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a 237 (350)
|+.|+..| ++.+...|..|+.+|..+ +. +.+++.|+++++++ ++.-...|..+|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------------~~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-------------GD-PEAIPALIELLKDE-DPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-------------TH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-------------CC-HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC------
Confidence 57788888 667899999888887733 12 57789999999765 6665555555555441
Q ss_pred HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccC-hhHHHHHHHHH
Q 046820 238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVS-ELATELSVSIL 283 (350)
Q Consensus 238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S-~~~~E~Av~iL 283 (350)
...+++.+.+.+...+ ...++.|+..|
T Consensus 60 -------------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 -------------------DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -------------------HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -------------------CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 1235677777776643 34467777665
No 53
>PTZ00429 beta-adaptin; Provisional
Probab=94.32 E-value=9.7 Score=41.48 Aligned_cols=214 Identities=15% Similarity=0.111 Sum_probs=125.6
Q ss_pred chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820 62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL 141 (350)
Q Consensus 62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~ 141 (350)
.++.++-..|.+. +...+.++++++-..--.+... .-+.+-++.++. .. +.+ +..-+...+.
T Consensus 32 ge~~ELr~~L~s~----~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~---S~----d~e-lKKLvYLYL~ 93 (746)
T PTZ00429 32 GEGAELQNDLNGT----DSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAP---ST----DLE-LKKLVYLYVL 93 (746)
T ss_pred chHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhC---CC----CHH-HHHHHHHHHH
Confidence 3566666666553 4567788888876554333110 113334444443 22 232 2333333221
Q ss_pred hCCC-ChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHH
Q 046820 142 LFPL-EGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTAT 220 (350)
Q Consensus 142 ~Ls~-~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~ 220 (350)
+..- .+| ..++ +++.+.+-|.+.++-.|..|.++|.++-.. + .+ +-+++.+.+.+.+. +|--.
T Consensus 94 ~ya~~~pe-lalL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~----~---i~---e~l~~~lkk~L~D~-~pYVR 157 (746)
T PTZ00429 94 STARLQPE-KALL----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS----S---VL---EYTLEPLRRAVADP-DPYVR 157 (746)
T ss_pred HHcccChH-HHHH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH----H---HH---HHHHHHHHHHhcCC-CHHHH
Confidence 3321 112 1122 577788888888899999998888776421 2 22 45667777888766 77788
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHH
Q 046820 221 KAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVE 300 (350)
Q Consensus 221 k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~ 300 (350)
|.|+.+++.+-.. .+ .+..+.+-++-+.+++...++...-+|+.+|..++..+++ ..
T Consensus 158 KtAalai~Kly~~-------------~p----elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~----~l-- 214 (746)
T PTZ00429 158 KTAAMGLGKLFHD-------------DM----QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE----KI-- 214 (746)
T ss_pred HHHHHHHHHHHhh-------------Cc----ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch----hh--
Confidence 8888888887431 11 1223445567777766667788889999999999876532 11
Q ss_pred HHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820 301 ALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336 (350)
Q Consensus 301 ~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~ 336 (350)
-.-.+.+.+|+..|. +|++-.+-. +|++|..+
T Consensus 215 ~l~~~~~~~Ll~~L~-e~~EW~Qi~---IL~lL~~y 246 (746)
T PTZ00429 215 ESSNEWVNRLVYHLP-ECNEWGQLY---ILELLAAQ 246 (746)
T ss_pred HHHHHHHHHHHHHhh-cCChHHHHH---HHHHHHhc
Confidence 123455677776664 466666665 66666654
No 54
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.13 E-value=8.8 Score=42.64 Aligned_cols=144 Identities=16% Similarity=0.095 Sum_probs=76.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHH
Q 046820 160 GCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALS 239 (350)
Q Consensus 160 ~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~ 239 (350)
+.|...|...+.+.|..|+..|-.+... ....++.|..+++|+ ++.....|+.+|-++....+..-.
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~------------~~~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~~~~~~~~ 811 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAG------------GAPAGDAVRALTGDP-DPLVRAAALAALAELGCPPDDVAA 811 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccc------------cchhHHHHHHHhcCC-CHHHHHHHHHHHHhcCCcchhHHH
Confidence 3444455555555665555555554321 123467888888876 577777778887776432111111
Q ss_pred HHHHHhCC-HhhHHHhh------cCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHH
Q 046820 240 VLDGICST-DCGRENAN------DKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLV 312 (350)
Q Consensus 240 vL~~L~~~-~eGr~ai~------~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~ 312 (350)
++..|... ..=|.+.. ....+++.|+..+..-+...+..|+.+|..+- ++ . . +.+.|-.
T Consensus 812 l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~--~-~--------a~~~L~~ 877 (897)
T PRK13800 812 ATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWP---GD--P-A--------ARDALTT 877 (897)
T ss_pred HHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC--H-H--------HHHHHHH
Confidence 22333221 11122111 13456677788776667777777887776541 11 1 1 1222222
Q ss_pred HHHhcCchHHHHHHHHHHH
Q 046820 313 LLQVGCAERTKEKASEVLK 331 (350)
Q Consensus 313 llq~~~t~~ak~kA~~LLk 331 (350)
.+. +..+..|+-|.+.|.
T Consensus 878 al~-D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 878 ALT-DSDADVRAYARRALA 895 (897)
T ss_pred HHh-CCCHHHHHHHHHHHh
Confidence 333 556778888777664
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=94.02 E-value=0.0089 Score=43.30 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=19.1
Q ss_pred cccccccccccCCccc-CCCCCCcccCCccc
Q 046820 21 RKETGASLIEKDPVTT-TPRNGITYDRVNIL 50 (350)
Q Consensus 21 ~~~~~~~eiM~DPVtl-~~~TG~TYDR~sIe 50 (350)
.+.-.+++.|+|||+- . -||||||++|+
T Consensus 12 ~~CPiT~~~~~~PV~s~~--C~H~fek~aI~ 40 (57)
T PF11789_consen 12 LKCPITLQPFEDPVKSKK--CGHTFEKEAIL 40 (57)
T ss_dssp SB-TTTSSB-SSEEEESS--S--EEEHHHHH
T ss_pred cCCCCcCChhhCCcCcCC--CCCeecHHHHH
Confidence 3445678899999985 4 49999999987
No 56
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=2 Score=47.82 Aligned_cols=151 Identities=16% Similarity=0.183 Sum_probs=102.3
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA 237 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a 237 (350)
.++.+-.+|.+.++..|..|..+|-.+++.. .+..+|.-+.+++..+..|+|+ +|+-.-+|+.++..++..
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc----~~~m~~~l~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~std---- 419 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGC----SDVMIGNLPKILPIVLNGLNDP-HPRVRYAALNAIGQMSTD---- 419 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHccc----HHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhh----
Confidence 5777778888999999998888888777543 2334555688999999999887 888888888888888642
Q ss_pred HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhc-cChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHH-HHHHHHH
Q 046820 238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILR-VSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQ-KLLVLLQ 315 (350)
Q Consensus 238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~-~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~-~LL~llq 315 (350)
.+-.-+.- -|.-.+|.++..+.+ .+++-+-||++.|.+....+.. -.-+-.=-+.++ +|+.++|
T Consensus 420 ---------l~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~----~~l~pYLd~lm~~~l~~L~~ 485 (1075)
T KOG2171|consen 420 ---------LQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK----SILEPYLDGLMEKKLLLLLQ 485 (1075)
T ss_pred ---------hcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHhc
Confidence 11111111 144456778887766 4678899999999987665421 111222345566 5555556
Q ss_pred hcCchHHHHHHHHHHHH
Q 046820 316 VGCAERTKEKASEVLKL 332 (350)
Q Consensus 316 ~~~t~~ak~kA~~LLk~ 332 (350)
++ ++..|+.|..-+--
T Consensus 486 ~~-~~~v~e~vvtaIas 501 (1075)
T KOG2171|consen 486 SS-KPYVQEQAVTAIAS 501 (1075)
T ss_pred CC-chhHHHHHHHHHHH
Confidence 54 89999998765543
No 57
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.49 E-value=9.9 Score=38.74 Aligned_cols=194 Identities=11% Similarity=0.126 Sum_probs=108.8
Q ss_pred HHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCC
Q 046820 67 INSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLE 146 (350)
Q Consensus 67 lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~ 146 (350)
.+..+.....+.++..+.-||+.|..+... -+.+. +++.+..+|. ++ ++.++..|+.++......+
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~------~~~~~-l~~~v~~ll~---~~----~~~VRk~A~~~l~~i~~~~ 145 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP------EMAEP-LIPDVIKLLS---DP----SPYVRKKAALALLKIYRKD 145 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH------HHHHH-HHHHHHHHHH---SS----SHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhccc------chhhH-HHHHHHHHhc---CC----chHHHHHHHHHHHHHhccC
Confidence 444444444345666667788877777621 23322 4667777775 32 4778988888777322222
Q ss_pred hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHH
Q 046820 147 GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVV 226 (350)
Q Consensus 147 ~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~a 226 (350)
+ ..+... .++.+..+|...++..+.+|..++..+ ...+ +.+...+ +.++..|.+++... +|-..-..++.
T Consensus 146 p---~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~-~~~~~~~---~~~~~~L~~~l~~~-~~~~q~~il~~ 215 (526)
T PF01602_consen 146 P---DLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCND-DSYKSLI---PKLIRILCQLLSDP-DPWLQIKILRL 215 (526)
T ss_dssp H---CCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH-HHHTTHH---HHHHHHHHHHHTCC-SHHHHHHHHHH
T ss_pred H---HHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCc-chhhhhH---HHHHHHhhhccccc-chHHHHHHHHH
Confidence 2 222222 589999999888999999999999999 2211 1222222 45555555555433 34333333444
Q ss_pred HHHhhh--------------------hH-----HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHH
Q 046820 227 IYHTIA--------------------SS-----ASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVS 281 (350)
Q Consensus 227 L~~L~~--------------------~~-----e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~ 281 (350)
|..++. +. -.|..++-.+...++ + -..+++.+++.+...++.-+-.+..
T Consensus 216 l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----~--~~~~~~~L~~lL~s~~~nvr~~~L~ 289 (526)
T PF01602_consen 216 LRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----L--LQKAINPLIKLLSSSDPNVRYIALD 289 (526)
T ss_dssp HTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----H--HHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred HHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH----H--HHhhHHHHHHHhhcccchhehhHHH
Confidence 433322 11 134444444444433 1 1234677777666445567778888
Q ss_pred HHHHHcccc
Q 046820 282 ILWKLCMNE 290 (350)
Q Consensus 282 iL~~Lc~~~ 290 (350)
.|..++...
T Consensus 290 ~L~~l~~~~ 298 (526)
T PF01602_consen 290 SLSQLAQSN 298 (526)
T ss_dssp HHHHHCCHC
T ss_pred HHHHhhccc
Confidence 888888754
No 58
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.29 E-value=4.8 Score=41.07 Aligned_cols=129 Identities=19% Similarity=0.191 Sum_probs=65.4
Q ss_pred ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCc
Q 046820 79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASS 158 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~ 158 (350)
++-.+...++-|..++..++....- ...++.+..++.+ . +..+.-+++.++. .+...++ .-..+
T Consensus 205 ~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s--~-----~~~V~~e~~~~i~-~l~~~~~-----~~~~~ 268 (526)
T PF01602_consen 205 DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQS--S-----SPSVVYEAIRLII-KLSPSPE-----LLQKA 268 (526)
T ss_dssp SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHH--H-----HHHHHHHHHHHHH-HHSSSHH-----HHHHH
T ss_pred chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhc--c-----ccHHHHHHHHHHH-HhhcchH-----HHHhh
Confidence 4444555555555555444333211 3455666666641 1 2345555556655 3332222 11235
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820 159 MGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232 (350)
Q Consensus 159 l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~ 232 (350)
++.++.+|.+.+.+.|.-+...|..++... ...+-. .. ..+..++...+..-++.++..|++++.
T Consensus 269 ~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-----~~~v~~-~~---~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 269 INPLIKLLSSSDPNVRYIALDSLSQLAQSN-----PPAVFN-QS---LILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-----HHHHGT-HH---HHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhhcccchhehhHHHHHHHhhccc-----chhhhh-hh---hhhheecCCCChhHHHHHHHHHhhccc
Confidence 777777777777777777777777776432 222211 11 112233322255666777777777764
No 59
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=92.70 E-value=5.6 Score=41.58 Aligned_cols=211 Identities=14% Similarity=0.172 Sum_probs=118.4
Q ss_pred hccCchHHHHHHHHhccccccccchHHHH---HHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHH
Q 046820 105 VDNAAVSVLAAAFESFSKTCLDENVSVLE---EILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLL 181 (350)
Q Consensus 105 ~~aGai~~Lv~lL~~~~~~~~~~~~~~~e---~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL 181 (350)
.+.+++|.+-.+|.+|++. ...+++ .|+.++...+ +... -...+++++.-+....+.+|.+++.+|
T Consensus 210 ~EPyiv~~lp~il~~~~d~----~~~Vr~Aa~~a~kai~~~~--~~~a-----VK~llpsll~~l~~~kWrtK~aslell 278 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDK----INKVREAAVEAAKAIMRCL--SAYA-----VKLLLPSLLGSLLEAKWRTKMASLELL 278 (569)
T ss_pred CCchHHhhHHHHHHHhhcc----chhhhHHHHHHHHHHHHhc--Ccch-----hhHhhhhhHHHHHHHhhhhHHHHHHHH
Confidence 3456777777777766543 233443 3444444222 2211 112344444445444789999999999
Q ss_pred HHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh--H-H---HHHHHHHHHhCCH-------
Q 046820 182 TELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS--S-A---SALSVLDGICSTD------- 248 (350)
Q Consensus 182 ~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~--~-e---~aL~vL~~L~~~~------- 248 (350)
-.+....+ .... . .-+.+||-|.+.+-|. .+.-.+++..+|..+++. | + ..=.+|+.++...
T Consensus 279 g~m~~~ap--~qLs-~-~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~ 353 (569)
T KOG1242|consen 279 GAMADCAP--KQLS-L-CLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECL 353 (569)
T ss_pred HHHHHhch--HHHH-H-HHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHH
Confidence 98875532 2222 2 2388999999999876 788999999999999753 1 1 1111222222211
Q ss_pred --hhHHHhhc--CCCChHHHHHHHhcc----ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh---c
Q 046820 249 --CGRENAND--KPLTMPVVVKKILRV----SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV---G 317 (350)
Q Consensus 249 --eGr~ai~~--~~~~v~~lv~~l~~~----S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~---~ 317 (350)
.|+..++. ++-.+..+|-.+.|+ |...+..++.|.+++|+.-.+ +..+ ...+++|+=-++. +
T Consensus 354 ~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD--p~~l-----apfl~~Llp~lk~~~~d 426 (569)
T KOG1242|consen 354 DSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED--PKDL-----APFLPSLLPGLKENLDD 426 (569)
T ss_pred HhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC--HHHH-----hhhHHHHhhHHHHHhcC
Confidence 12222221 344556666666554 335578899999999996521 1111 1123333322221 2
Q ss_pred CchHHHHHHHHHH-HHHHhccC
Q 046820 318 CAERTKEKASEVL-KLMNLHRD 338 (350)
Q Consensus 318 ~t~~ak~kA~~LL-k~l~~~~~ 338 (350)
--|.+|.-|..-| .++++...
T Consensus 427 ~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 427 AVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred CChhHHHHHHHHHHHHHHHHHh
Confidence 1378888888777 66666444
No 60
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=92.39 E-value=14 Score=37.57 Aligned_cols=199 Identities=13% Similarity=0.067 Sum_probs=121.2
Q ss_pred CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhc-----ccCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 046820 108 AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHL-----GSASSMGCMIWFLNSGDLSRRRNAVLLLT 182 (350)
Q Consensus 108 Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i-----~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~ 182 (350)
..+..++.+|.. . ...++.+..+..+.-+|..++..-..+ ..++.....+.+|.+++.-....|..+|-
T Consensus 53 ~y~~~~l~ll~~---~---~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt 126 (429)
T cd00256 53 QYVKTFVNLLSQ---I---DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILA 126 (429)
T ss_pred HHHHHHHHHHhc---c---CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHH
Confidence 567777777752 1 135567777777665555443221222 22567788888898888777888888888
Q ss_pred HHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChH
Q 046820 183 ELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMP 262 (350)
Q Consensus 183 ~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~ 262 (350)
.|.+... ...... ...-++.-|...++++.+.+.. .-++..|..|...++-|..+..+. +++
T Consensus 127 ~l~~~~~--~~~~~~-~l~~~~~~l~~~l~~~~~~~~~--------------~~~v~~L~~LL~~~~~R~~f~~~~-~v~ 188 (429)
T cd00256 127 KLACFGL--AKMEGS-DLDYYFNWLKEQLNNITNNDYV--------------QTAARCLQMLLRVDEYRFAFVLAD-GVP 188 (429)
T ss_pred HHHhcCc--cccchh-HHHHHHHHHHHHhhccCCcchH--------------HHHHHHHHHHhCCchHHHHHHHcc-CHH
Confidence 8865421 110000 0012334455555543222222 345667777788888998886544 899
Q ss_pred HHHHHHhccC--hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 263 VVVKKILRVS--ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 263 ~lv~~l~~~S--~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
.++..|...+ -+..=++.-++|.|.-.. .....+...+.++.|+.+++..--++.=|.+-.+|+.|-.
T Consensus 189 ~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~-----~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 189 TLVKLLSNATLGFQLQYQSIFCIWLLTFNP-----HAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHhccH-----HHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 9999887643 366788999999997642 2444555789999998888744223444444444554444
No 61
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=91.99 E-value=3.2 Score=43.79 Aligned_cols=123 Identities=12% Similarity=0.044 Sum_probs=87.3
Q ss_pred HHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccC
Q 046820 193 KVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVS 272 (350)
Q Consensus 193 ~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S 272 (350)
.+... ....++.+||+++.++ +..-.+.++.+|.|++. ....=+..+. ..|+|..+.+.+....
T Consensus 411 L~tg~-~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVm-------------efs~~kskfl-~~ngId~l~s~~~~~~ 474 (678)
T KOG1293|consen 411 LRTGL-KRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVM-------------EFSNLKSKFL-RNNGIDILESMLTDPD 474 (678)
T ss_pred HHcCC-ccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHh-------------hcccHHHHHH-HcCcHHHHHHHhcCCC
Confidence 34444 3467899999999877 55777888889998863 1222345554 6789999999998888
Q ss_pred hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 273 ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 273 ~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
+..+..++-+|..+.-++ ++......-.-+...++..+-.+--...++.+=.|||.|.-
T Consensus 475 ~n~r~~~~~~Lr~l~f~~----de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 475 FNSRANSLWVLRHLMFNC----DEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred chHHHHHHHHHHHHHhcc----hHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 888889999999987765 23444444444444455555556567899998888887765
No 62
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.80 E-value=1.3 Score=40.15 Aligned_cols=180 Identities=13% Similarity=0.091 Sum_probs=95.6
Q ss_pred CChhHHHHHHHHHHHHHhcC--ccccchhhcc--CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhc
Q 046820 78 QDQVGCKDLVAKIKEWAKES--ESNKSCIVDN--AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHL 153 (350)
Q Consensus 78 ~~~~~~~~Al~~L~~Lak~s--~~nR~~i~~a--Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i 153 (350)
.+-..+.+|+.+|+.+.+.+ ..+...+.+. .++..+...+.+ ....+..+|+.++.. +. ...+..+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-------~Rs~v~~~A~~~l~~-l~--~~l~~~~ 88 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-------LRSKVSKTACQLLSD-LA--RQLGSHF 88 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-------H---HHHHHHHHHHH-HH--HHHGGGG
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-------hHHHHHHHHHHHHHH-HH--HHHhHhH
Confidence 45688899999999999987 2233333222 333444444431 123456666666552 22 1111112
Q ss_pred c--cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhH-HHHHHHHhcCCCChHHHHHHHHHHHHh
Q 046820 154 G--SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGA-IEALFKLIEEPISPTATKAALVVIYHT 230 (350)
Q Consensus 154 ~--~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~-i~~LV~lL~~~~~~~a~k~Al~aL~~L 230 (350)
. -...++.|+..+.++..-.+..|..+|..+.... . . . +.+ ++.+.....+. ++.....++..|..+
T Consensus 89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~---~----~-~-~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESC---S----Y-S-PKILLEILSQGLKSK-NPQVREECAEWLAII 158 (228)
T ss_dssp HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--------H----HHHHHHHHHHTT-S--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHC---C----c-H-HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 1 1346888888888888888999999999987542 1 1 1 344 44555555554 677777667766666
Q ss_pred hhhHHHHHHHHHHHhCCHhhHHHhhcC----CCChHHHHHHHhccChhHHHHHHHHHHHHccccc
Q 046820 231 IASSASALSVLDGICSTDCGRENANDK----PLTMPVVVKKILRVSELATELSVSILWKLCMNEK 291 (350)
Q Consensus 231 ~~~~e~aL~vL~~L~~~~eGr~ai~~~----~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~ 291 (350)
..... ........ ...++.+++.+...++..++.|-.+++.+.+..+
T Consensus 159 l~~~~--------------~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 159 LEKWG--------------SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HTT-------------------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHcc--------------chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 43211 00111111 1235666776777788999999999999987654
No 63
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.068 Score=55.59 Aligned_cols=32 Identities=34% Similarity=0.353 Sum_probs=26.8
Q ss_pred CCcc-ccccccccccCCcccCCCCCCcccCCccc
Q 046820 18 QPAR-KETGASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 18 ~~~~-~~~~~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
+||. .|-+-=.||||||.++ +||+|-||+-|.
T Consensus 851 vPDeFlDPLmftimkdPV~Lp-~S~i~IDRSTik 883 (929)
T COG5113 851 VPDEFLDPLMFTIMKDPVKLP-TSRITIDRSTIK 883 (929)
T ss_pred CchhhhCchhhhcccCCeecc-cccccccHHHHH
Confidence 8885 4555669999999996 579999999998
No 64
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.77 E-value=3.7 Score=37.14 Aligned_cols=164 Identities=15% Similarity=0.133 Sum_probs=77.5
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCchhH-HhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh------------
Q 046820 167 NSGDLSRRRNAVLLLTELVSSDSDQRK-VNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS------------ 233 (350)
Q Consensus 167 ~~gs~~~r~~Aa~lL~~Ls~~~~~~~~-~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~------------ 233 (350)
.+.+++.|..|..-|..+...+..... ...+.....++..+...+.+. .....+.|+.++-.++..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 345788888888888888654300011 111111123444555555543 234566777666666431
Q ss_pred ---------------HHHHHHHHHHHhCCHhhHHHhhcCCCC-hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHH
Q 046820 234 ---------------SASALSVLDGICSTDCGRENANDKPLT-MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTA 297 (350)
Q Consensus 234 ---------------~e~aL~vL~~L~~~~eGr~ai~~~~~~-v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~ 297 (350)
.+.|..+|..++..-.. .... ++.+...+..-++..++.++..|..+....+......
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~------~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSY------SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCc------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 13555555555553210 0111 2222222334567888889988888877654100001
Q ss_pred HHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccC
Q 046820 298 FVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRD 338 (350)
Q Consensus 298 ~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~ 338 (350)
.....-...++.+. -.-.|..+.+|+.|+.++..|...|+
T Consensus 170 ~~~~~~~~l~~~l~-~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 170 QKSAFLKQLVKALV-KLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp --HHHHHHHHHHHH-HHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred cccchHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 00000011233232 23347789999999999999988775
No 65
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=91.58 E-value=8.3 Score=33.84 Aligned_cols=119 Identities=11% Similarity=0.179 Sum_probs=84.2
Q ss_pred cCCcHHHHHHHHccCCH------HHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCC-ChHHHHHHHHHH
Q 046820 155 SASSMGCMIWFLNSGDL------SRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPI-SPTATKAALVVI 227 (350)
Q Consensus 155 ~~~~l~~Lv~~L~~gs~------~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~-~~~a~k~Al~aL 227 (350)
+.+++..|+.++++|+. +.=.++...+.+|...+- -.-+.+ + +.+|.-.+..+.... ++.
T Consensus 9 ~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~--vsWd~l-~-~~FI~Kia~~Vn~~~~d~~--------- 75 (160)
T PF11841_consen 9 SRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI--VSWDTL-S-DSFIKKIASYVNSSAMDAS--------- 75 (160)
T ss_pred hccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc--Cchhhc-c-HHHHHHHHHHHccccccch---------
Confidence 45789999999998863 333446666666665421 123445 3 678888888887442 221
Q ss_pred HHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccc
Q 046820 228 YHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEK 291 (350)
Q Consensus 228 ~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~ 291 (350)
--+.||++|+.+.......-..+...-.++.++..+...++.-+-+|++.+-+|....+
T Consensus 76 -----i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 76 -----ILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred -----HHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 12478888888877666655555678889999999988888889999999999988764
No 66
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.53 E-value=7.7 Score=36.57 Aligned_cols=150 Identities=12% Similarity=0.067 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhcccCCcHH
Q 046820 82 GCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGSASSMG 160 (350)
Q Consensus 82 ~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~~l~ 160 (350)
-.+.|+.-+.-+|.+ ++.|..+..+-+.-.|-.+|.-.+.+ -.....+-.++.++-.++..+| +--+-+...+.++
T Consensus 95 RVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~--r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 95 RVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKS--RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred hHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccC--CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 345677666666655 67788888887776777777521111 1223455667777765555565 4344556789999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHhcCCCchhH-Hh---hhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH
Q 046820 161 CMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRK-VN---VLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS 234 (350)
Q Consensus 161 ~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~-~~---~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~ 234 (350)
..++.+.+||..+|.-|+.++..+..++++=.+ |. ......-.+..+|.-+.+..+++..|..+++..+|+.+.
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999988766431111 11 111112333344433334458899998888888887543
No 67
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=90.92 E-value=20 Score=36.46 Aligned_cols=191 Identities=13% Similarity=0.060 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHH
Q 046820 129 VSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEAL 207 (350)
Q Consensus 129 ~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~L 207 (350)
.-+++.+..+|..+++.+.++.........++-+...|+++ +.....-|+..|..|.... .++..+-+ .+.++.|
T Consensus 115 ~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~---~~R~~f~~-~~~v~~L 190 (429)
T cd00256 115 QFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD---EYRFAFVL-ADGVPTL 190 (429)
T ss_pred hhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc---hHHHHHHH-ccCHHHH
Confidence 44667777777643332221100000011334555666665 4677777888898888763 78877755 5689999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc-ChhHHHHHHHHHHHH
Q 046820 208 FKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV-SELATELSVSILWKL 286 (350)
Q Consensus 208 V~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~-S~~~~E~Av~iL~~L 286 (350)
+.+|+... .....+|+.+ -++=.|+=.+++...+ .+.+.|+.+++.+... .....--++++|.|+
T Consensus 191 ~~~L~~~~------~~~Ql~Y~~l-------l~lWlLSF~~~~~~~~-~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nl 256 (429)
T cd00256 191 VKLLSNAT------LGFQLQYQSI-------FCIWLLTFNPHAAEVL-KRLSLIQDLSDILKESTKEKVIRIVLAIFRNL 256 (429)
T ss_pred HHHHhhcc------ccHHHHHHHH-------HHHHHHhccHHHHHhh-ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99998643 1233344432 1222233334444444 4678899999977654 356678899999999
Q ss_pred ccccccc--hHHHHHHHHhhchHHHHHHHHHhcC--chHHHHHHHHHHHHHHhccC
Q 046820 287 CMNEKRE--EKTAFVEALQVGAFQKLLVLLQVGC--AERTKEKASEVLKLMNLHRD 338 (350)
Q Consensus 287 c~~~~~~--~~~~~~~~~~~G~v~~LL~llq~~~--t~~ak~kA~~LLk~l~~~~~ 338 (350)
...+.+. ...+...|+..|+.+ ++..|+... -+...+--..|-..|....+
T Consensus 257 l~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k 311 (429)
T cd00256 257 ISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQ 311 (429)
T ss_pred hhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 8865321 124567777777655 666776432 24555555555555555433
No 68
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.86 E-value=3.1 Score=40.28 Aligned_cols=187 Identities=14% Similarity=0.131 Sum_probs=107.6
Q ss_pred HHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhcc-CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC
Q 046820 66 EINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDN-AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP 144 (350)
Q Consensus 66 ~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~a-Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls 144 (350)
+++.-+.+. ++..+..|+..+-.++.. .-+.+.... -.++.|..++. .. .-.+.|+++|. |++
T Consensus 7 elv~ll~~~----sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~---~~------~~~~~a~~alV-nls 70 (353)
T KOG2973|consen 7 ELVELLHSL----SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLK---DL------DPAEPAATALV-NLS 70 (353)
T ss_pred HHHHHhccC----ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHcc---Cc------ccccHHHHHHH-HHH
Confidence 444445443 456677788888888766 334444332 56777888774 22 11577889999 898
Q ss_pred CChhhHhhcccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhch-----hhHHHHHHHHhcCCCChH
Q 046820 145 LEGEALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSEN-----EGAIEALFKLIEEPISPT 218 (350)
Q Consensus 145 ~~~e~k~~i~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~-----~g~i~~LV~lL~~~~~~~ 218 (350)
-+.+-++.+... .+..+++.+-.. +.-++. .+.+|.+|+...+ .....+... .|.+...+.+...+.+..
T Consensus 71 q~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~-~cmlL~NLs~~~~--~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~ 146 (353)
T KOG2973|consen 71 QKEELRKKLLQD-LLKVLMDMLTDPQSPLADL-ICMLLSNLSRDDD--EVAALLTNLTEKKDSGLMRLARAFCDKSYNAY 146 (353)
T ss_pred hhHHHHHHHHHH-HHHHHHHHhcCcccchHHH-HHHHHHHhccCch--HHHHHHHhcccccccchHHHHHHHhCcccccc
Confidence 666555555444 888999988776 444444 7889999997753 333333221 233333333333221110
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHh--c--cChhHHHHHHHHHHHHcc
Q 046820 219 ATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKIL--R--VSELATELSVSILWKLCM 288 (350)
Q Consensus 219 a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~--~--~S~~~~E~Av~iL~~Lc~ 288 (350)
+ .-..-.-++.+|...+.||.-+. ++--+ .+.+++ . .|..-+..-+++|.|.|-
T Consensus 147 a-------------~f~ylA~vf~nls~~~~gR~l~~-~~k~~--p~~kll~ft~~~s~vRr~GvagtlkN~cF 204 (353)
T KOG2973|consen 147 A-------------EFHYLAPVFANLSQFEAGRKLLL-EPKRF--PDQKLLPFTSEDSQVRRGGVAGTLKNCCF 204 (353)
T ss_pred c-------------chhHHHHHHHHHhhhhhhhhHhc-chhhh--hHhhhhcccccchhhhccchHHHHHhhhc
Confidence 0 01244557888888888998875 44422 223332 2 233445667777777664
No 69
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.77 E-value=22 Score=39.99 Aligned_cols=177 Identities=12% Similarity=0.045 Sum_probs=103.0
Q ss_pred chHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhccc-CCcHHHHHHHHccCCHHHHHHHHHHHHHHhc
Q 046820 109 AVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGS-ASSMGCMIWFLNSGDLSRRRNAVLLLTELVS 186 (350)
Q Consensus 109 ai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~-~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~ 186 (350)
+.|++...+..+-.+ .+..-+..++-+|. .+.+ -.+.++.. +..++-++..|+..++..|.-|..+|-.++.
T Consensus 345 v~p~~~~~l~~~l~S---~~w~~R~AaL~Als---~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 345 VLPPLFEALEAMLQS---TEWKERHAALLALS---VIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred ehHHHHHHHHHHhcC---CCHHHHHHHHHHHH---HHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence 566666666433221 12334555665555 2333 22333333 5577777788888899999999999999986
Q ss_pred CCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHH
Q 046820 187 SDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVK 266 (350)
Q Consensus 187 ~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~ 266 (350)
+-. +.....- ..-++++|+.++.+..+++-...|..+|.|+... |+ ..++ ..-++.+++
T Consensus 419 dl~-p~iqk~~--~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-------------~~---~~~l--~pYLd~lm~ 477 (1075)
T KOG2171|consen 419 DLQ-PEIQKKH--HERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-------------CD---KSIL--EPYLDGLME 477 (1075)
T ss_pred hhc-HHHHHHH--HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-------------Cc---HHHH--HHHHHHHHH
Confidence 532 2222111 2456678899998777778778888888877532 21 1111 111333343
Q ss_pred ----HH-hccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhc
Q 046820 267 ----KI-LRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVG 317 (350)
Q Consensus 267 ----~l-~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~ 317 (350)
.+ .++++..+|.+|+++..++.-.......+ =.-.++-|...||..
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY-----~d~~Mp~L~~~L~n~ 528 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPY-----FDRLMPLLKNFLQNA 528 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhH-----HHHHHHHHHHHHhCC
Confidence 22 24678899999999988886433211111 122456666666643
No 70
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.50 E-value=1.5 Score=30.58 Aligned_cols=55 Identities=18% Similarity=0.124 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 046820 171 LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHT 230 (350)
Q Consensus 171 ~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L 230 (350)
+..|.+|+..|-+++...+ +.... . .+.+++.|+.+|+|+ ++.-...|..+|-+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~-~~~~~-~--~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCP-ELLQP-Y--LPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTH-HHHHH-H--HHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccH-HHHHH-H--HHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 3568889999988765532 22232 2 379999999999876 445566667776553
No 71
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=88.29 E-value=0.18 Score=34.05 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=16.9
Q ss_pred cccccCCcccCCCCCCcccCCccc
Q 046820 27 SLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 27 ~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
+++++|||++. -|++|=+.-|+
T Consensus 5 ~~~~~~Pv~l~--CGH~FC~~Cl~ 26 (42)
T PF15227_consen 5 LDLFKDPVSLP--CGHSFCRSCLE 26 (42)
T ss_dssp TSB-SSEEE-S--SSSEEEHHHHH
T ss_pred chhhCCccccC--CcCHHHHHHHH
Confidence 58999999999 99999776654
No 72
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=87.25 E-value=4.5 Score=41.25 Aligned_cols=141 Identities=14% Similarity=0.081 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCccccchhhccCchHHHHHHHHhccc----cccccchHHHHHHHHHHHhhCC-CChhhHhhcccCCcHH
Q 046820 86 LVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSK----TCLDENVSVLEEILSTLILLFP-LEGEALTHLGSASSMG 160 (350)
Q Consensus 86 Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~----~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k~~i~~~~~l~ 160 (350)
||..||-++++. .+-.-|.....+..|+.+-. +.. .....+..+..+|+.+|. |+= .++..+....+.+..+
T Consensus 1 ~L~~LRiLsRd~-~~~~~l~~~~~l~~L~~~a~-l~~~~~~~~~~~~~~v~~EALKCL~-N~lf~s~~aR~~~~~~~~~~ 77 (446)
T PF10165_consen 1 CLETLRILSRDP-TGLDPLFTEEGLSTLLKHAG-LSESDEDEFESPDPDVSREALKCLC-NALFLSPSARQIFVDLGLAE 77 (446)
T ss_pred CHHHHHHHccCc-ccchhhccHHHHHHHHHhcC-CcccccccccCCChHHHHHHHHHHH-HHHhCCHHHHHHHHHcCcHH
Confidence 356677777664 34444444444555555441 111 000234678899999998 664 4456778888889999
Q ss_pred HHHHHHccC-----CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcC-------C---------CChHH
Q 046820 161 CMIWFLNSG-----DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEE-------P---------ISPTA 219 (350)
Q Consensus 161 ~Lv~~L~~g-----s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~-------~---------~~~~a 219 (350)
.++..|+.. +.+...-..++||=++.... +.+..+-...+.+..++..|.. . .+..+
T Consensus 78 ~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~--~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~ 155 (446)
T PF10165_consen 78 KLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRP--DDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEA 155 (446)
T ss_pred HHHHHHHcccccCCChhHHHHHHHHHHHHhcCCh--hHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHH
Confidence 999999987 78999999999998876543 3433332445666666665531 1 13345
Q ss_pred HHHHHHHHHHhh
Q 046820 220 TKAALVVIYHTI 231 (350)
Q Consensus 220 ~k~Al~aL~~L~ 231 (350)
....++.|||+.
T Consensus 156 l~EiLKllFNit 167 (446)
T PF10165_consen 156 LSEILKLLFNIT 167 (446)
T ss_pred HHHHHHHHHHhh
Confidence 678899999994
No 73
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=87.22 E-value=17 Score=38.07 Aligned_cols=131 Identities=13% Similarity=0.140 Sum_probs=93.7
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCC---hHHHHHHHHHHHHhhh--
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPIS---PTATKAALVVIYHTIA-- 232 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~---~~a~k~Al~aL~~L~~-- 232 (350)
....+.+++.+|+..+|..|..-|-+||.+. ....+.| + ...+..|..++.++.. ..-..-.++++..+-.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~--~fa~efi-~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehg 159 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDP--TFAEEFI-R-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHG 159 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccH--HHHHHHH-h-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhc
Confidence 5677889999999999999888888888653 2445555 5 4566888999988732 2333444555554421
Q ss_pred ---h------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHH
Q 046820 233 ---S------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWK 285 (350)
Q Consensus 233 ---~------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~ 285 (350)
| ...||.+|+++.-+.......+.+.--+..|+..+..+...-.-+|.+.|-+
T Consensus 160 vvsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 160 VVSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 1 1589999999988876555555677778888888877776666679999999
Q ss_pred Hcccccc
Q 046820 286 LCMNEKR 292 (350)
Q Consensus 286 Lc~~~~~ 292 (350)
+-....+
T Consensus 240 l~~~a~~ 246 (713)
T KOG2999|consen 240 LFRKAPD 246 (713)
T ss_pred HHhhCCh
Confidence 8887654
No 74
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=87.08 E-value=1.5 Score=38.49 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcc
Q 046820 236 SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCM 288 (350)
Q Consensus 236 ~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~ 288 (350)
.++..|..|+.+..|+..+..++.+|..++..+...+...+..|..+|..||.
T Consensus 135 ~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc~ 187 (187)
T PF06371_consen 135 ECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALCL 187 (187)
T ss_dssp HHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Confidence 67888889999999999999999999999999988888999999999999983
No 75
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=86.27 E-value=16 Score=38.66 Aligned_cols=141 Identities=11% Similarity=0.165 Sum_probs=93.4
Q ss_pred ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhcccCC
Q 046820 79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGSAS 157 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~ 157 (350)
|......|+-.++.+++.=..-|.-+..+.++.+|+.+|. .+ +..++..++.+|. |+-.+= ..|...-+.+
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~---dp----~~~i~~~~lgai~-NlVmefs~~kskfl~~n 461 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM---DP----EIMIMGITLGAIC-NLVMEFSNLKSKFLRNN 461 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh---Cc----chhHHHHHHHHHH-HHHhhcccHHHHHHHcC
Confidence 4333445666666666554444444777788999999995 32 3557777889998 776432 4466666778
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHT 230 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L 230 (350)
.|+-+...+..-....|.++..+|+.++-..+ +..+...=+ .=.-..++.+..|+ ++.-..-++..|.||
T Consensus 462 gId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d-e~~k~~~~~-ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 462 GIDILESMLTDPDFNSRANSLWVLRHLMFNCD-EEEKFQLLA-KIPANLILDLINDP-DWAVQEQCFQLLRNL 531 (678)
T ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHHhcch-HHHHHHHHH-HhhHHHHHHHHhCC-CHHHHHHHHHHHHHh
Confidence 99999999999999999999999999986644 333322201 11224555666655 655555556666666
No 76
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=86.18 E-value=2.2 Score=34.58 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC-CCChhhHhhcc
Q 046820 83 CKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF-PLEGEALTHLG 154 (350)
Q Consensus 83 ~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L-s~~~e~k~~i~ 154 (350)
+...++-|..++.++..+...+.+.|.+|.+++.-. + + +.++-..|-|+.++. || .-+++|+..|.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~-i--D--~~nP~irEwai~aiR-nL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCN-I--D--DHNPFIREWAIFAIR-NLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcC-C--C--cccHHHHHHHHHHHH-HHHhCCHHHHHHHH
Confidence 445678889999999999999999999999998764 2 2 346888999999999 55 44558887764
No 77
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=86.13 E-value=16 Score=30.85 Aligned_cols=77 Identities=17% Similarity=0.084 Sum_probs=58.6
Q ss_pred hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchH---HHHHHHHHHHHHHhcc
Q 046820 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAER---TKEKASEVLKLMNLHR 337 (350)
Q Consensus 261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~---ak~kA~~LLk~l~~~~ 337 (350)
+..|-+.|...++..+-+|+.+|=.+.+++| .....++.+...+..|..++....+.. +|+|+.++|+......
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg---~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCG---PRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH---HHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 5678888888899999999999999999886 356677777777888877776544444 8999777777766644
Q ss_pred CCC
Q 046820 338 DRL 340 (350)
Q Consensus 338 ~~~ 340 (350)
++.
T Consensus 121 ~~~ 123 (140)
T PF00790_consen 121 KSD 123 (140)
T ss_dssp TTS
T ss_pred CCC
Confidence 433
No 78
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=85.88 E-value=7.3 Score=39.93 Aligned_cols=137 Identities=12% Similarity=0.112 Sum_probs=86.7
Q ss_pred hcccCCcHHHHHHHHccCCHHH--HHHHHHHHHHHhcCCCchhHHhhhhch-hhHHHHHHHHhcCCCChHHHHHHHHHHH
Q 046820 152 HLGSASSMGCMIWFLNSGDLSR--RRNAVLLLTELVSSDSDQRKVNVLSEN-EGAIEALFKLIEEPISPTATKAALVVIY 228 (350)
Q Consensus 152 ~i~~~~~l~~Lv~~L~~gs~~~--r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~-~g~i~~LV~lL~~~~~~~a~k~Al~aL~ 228 (350)
.|...|.++.|++++...+.++ |..|+.+|+..... ++++.|.+. .|.|-.| -+....+...+
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a----eN~d~va~~~~~~Il~l---AK~~e~~e~aR------- 240 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA----ENRDRVARIGLGVILNL---AKEREPVELAR------- 240 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh----hhhhHHhhccchhhhhh---hhhcCcHHHHH-------
Confidence 4445689999999999986665 99999999998754 455555331 2444333 33332333333
Q ss_pred HhhhhHHHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchH
Q 046820 229 HTIASSASALSVLDGICST-DCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAF 307 (350)
Q Consensus 229 ~L~~~~e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v 307 (350)
..+.+|+++-.+ +|-...+. .++++-.++--..+..+.--.||+-+|.+..-+++ -++...|++-.+-
T Consensus 241 -------~~~~il~~mFKHSeet~~~Lv-aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~---~a~qrrmveKr~~ 309 (832)
T KOG3678|consen 241 -------SVAGILEHMFKHSEETCQRLV-AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGG---QAVQRRMVEKRAA 309 (832)
T ss_pred -------HHHHHHHHHhhhhHHHHHHHH-hhcccchheeecccCCHHHHHHHHHHhhhhhhhch---hHHHHHHHHhhhh
Confidence 445556666554 33344443 56777666555556667667788888888777664 3567778877777
Q ss_pred HHHHHH
Q 046820 308 QKLLVL 313 (350)
Q Consensus 308 ~~LL~l 313 (350)
+.|+-+
T Consensus 310 EWLF~L 315 (832)
T KOG3678|consen 310 EWLFPL 315 (832)
T ss_pred hhhhhh
Confidence 766543
No 79
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=85.77 E-value=12 Score=35.49 Aligned_cols=145 Identities=13% Similarity=0.094 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhcccCCcHH
Q 046820 82 GCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGSASSMG 160 (350)
Q Consensus 82 ~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~~l~ 160 (350)
-.+.|+.=+.-+|. +++.|..+.++.+.-.|-.+|.-.+... ....++-..+.++-.++..++ |.-.-+.+.+.++
T Consensus 66 RVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r--~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiip 142 (262)
T PF04078_consen 66 RVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTR--PFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIP 142 (262)
T ss_dssp HHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SH--HHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhcccccc--ccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHH
Confidence 34568877777887 5788999999998888888886211110 112233445555543334343 4445556789999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhc-------CCCChHHHHHHHHHHHHhhh
Q 046820 161 CMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE-------EPISPTATKAALVVIYHTIA 232 (350)
Q Consensus 161 ~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~-------~~~~~~a~k~Al~aL~~L~~ 232 (350)
.-.+.++.|+.-+|.-|..++..+..++ .-..-+....+=+.++..+|. +..+++..|-..++-..|+.
T Consensus 143 lcLr~me~GselSKtvAtfIlqKIL~dd---~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 143 LCLRIMEFGSELSKTVATFILQKILLDD---VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHHHHSH---HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHcch---hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 9999999999999999999999998663 222233343444444444433 33467777766666666653
No 80
>PTZ00429 beta-adaptin; Provisional
Probab=85.71 E-value=38 Score=36.98 Aligned_cols=92 Identities=14% Similarity=0.198 Sum_probs=67.8
Q ss_pred cchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHH
Q 046820 127 ENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEA 206 (350)
Q Consensus 127 ~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~ 206 (350)
.++.++-.|+.+|. .+...+ .-. -.+..+.+.|...++-.|..|+..+..|.... + +.+ ...|+++.
T Consensus 117 ~Np~IRaLALRtLs-~Ir~~~-i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~--p---elv-~~~~~~~~ 183 (746)
T PTZ00429 117 SSPVVRALAVRTMM-CIRVSS-VLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD--M---QLF-YQQDFKKD 183 (746)
T ss_pred CCHHHHHHHHHHHH-cCCcHH-HHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--c---ccc-cccchHHH
Confidence 35778888988888 454332 111 24666777788889999999999999997543 1 233 33688999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820 207 LFKLIEEPISPTATKAALVVIYHTIA 232 (350)
Q Consensus 207 LV~lL~~~~~~~a~k~Al~aL~~L~~ 232 (350)
|.++|.|. ++.-+-+|+.+|+.++.
T Consensus 184 L~~LL~D~-dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 184 LVELLNDN-NPVVASNAAAIVCEVND 208 (746)
T ss_pred HHHHhcCC-CccHHHHHHHHHHHHHH
Confidence 99999876 77888999999999964
No 81
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.90 E-value=2.6 Score=39.42 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhCCCChhhHhhcccCC-------cHHHHHHHHcc-CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchh
Q 046820 130 SVLEEILSTLILLFPLEGEALTHLGSAS-------SMGCMIWFLNS-GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENE 201 (350)
Q Consensus 130 ~~~e~Al~~L~~~Ls~~~e~k~~i~~~~-------~l~~Lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~ 201 (350)
..|.-|+.+|. -|++.|.|-..|-+.+ .+..|+++|.. ++.-.|+-|..+|.+|+..+ +..+..|+...
T Consensus 139 SPqrlaLEaLc-KLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~--~~~~r~iA~q~ 215 (257)
T PF12031_consen 139 SPQRLALEALC-KLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGD--EAAARAIAMQK 215 (257)
T ss_pred CHHHHHHHHHH-HhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhccc--HHHHHHHHHhh
Confidence 45888999999 6998888887664433 34445555543 48899999999999998664 35565677678
Q ss_pred hHHHHHHHHhcCC
Q 046820 202 GAIEALFKLIEEP 214 (350)
Q Consensus 202 g~i~~LV~lL~~~ 214 (350)
++|..||.++.+.
T Consensus 216 ~~i~~Li~FiE~a 228 (257)
T PF12031_consen 216 PCISHLIAFIEDA 228 (257)
T ss_pred chHHHHHHHHHHH
Confidence 9999999999753
No 82
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.82 E-value=6.5 Score=33.04 Aligned_cols=82 Identities=17% Similarity=0.121 Sum_probs=59.7
Q ss_pred hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh--cCchHHHHHHHHHHHHHHhccC
Q 046820 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV--GCAERTKEKASEVLKLMNLHRD 338 (350)
Q Consensus 261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~--~~t~~ak~kA~~LLk~l~~~~~ 338 (350)
+.+|-++|...++..+-.|+.+|=.+.+++|. ....+......+..|..++.. ...+..|+|+.++++.......
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~---~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGK---PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh---HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 56777888888899999999999999998863 455666665555556666654 3467999998888888777666
Q ss_pred CC-CCCCc
Q 046820 339 RL-ECVDG 345 (350)
Q Consensus 339 ~~-~c~~~ 345 (350)
++ +..+.
T Consensus 116 ~~~~~~~~ 123 (133)
T cd03561 116 GHSEDLPG 123 (133)
T ss_pred CCCccchH
Confidence 55 54443
No 83
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=83.18 E-value=9.7 Score=32.58 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=60.8
Q ss_pred ChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCC
Q 046820 260 TMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDR 339 (350)
Q Consensus 260 ~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~ 339 (350)
++.++-++|...++...-.|..+|-.+.+++| .....+....+.+..|..+++....+..|+|+-++++......++
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG---~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCG---THFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC---HHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 45778888888888889999999988888876 356777778888888887777666689999977777766665444
Q ss_pred CC
Q 046820 340 LE 341 (350)
Q Consensus 340 ~~ 341 (350)
.|
T Consensus 119 ~~ 120 (142)
T cd03569 119 KP 120 (142)
T ss_pred Cc
Confidence 43
No 84
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=82.10 E-value=24 Score=36.37 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh--hhHhhcccCCc
Q 046820 81 VGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG--EALTHLGSASS 158 (350)
Q Consensus 81 ~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~--e~k~~i~~~~~ 158 (350)
+.+...+.-|..+-|.|++....++++|.+..++--.+ .. ++.++.++.-+|- |..+.- +.++.|.+..+
T Consensus 237 e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~r---Rt----~P~lLRH~ALAL~-N~~L~~~~a~qrrmveKr~ 308 (832)
T KOG3678|consen 237 ELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCR---RT----DPALLRHCALALG-NCALHGGQAVQRRMVEKRA 308 (832)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecc---cC----CHHHHHHHHHHhh-hhhhhchhHHHHHHHHhhh
Confidence 33444555555666666666666677766665554333 22 2556666555555 555443 55555544433
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhc
Q 046820 159 MGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE 212 (350)
Q Consensus 159 l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~ 212 (350)
-+-|..+--+.+.-.|.+|+.+..-|+++..-+.....-|. -.++++||..+.
T Consensus 309 ~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~T-laLVEPlva~~D 361 (832)
T KOG3678|consen 309 AEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGT-LALVEPLVASLD 361 (832)
T ss_pred hhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccc-hhhhhhhhhccC
Confidence 33333333344677889999999999876421112222222 457788887775
No 85
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=81.70 E-value=11 Score=32.27 Aligned_cols=79 Identities=18% Similarity=0.063 Sum_probs=59.5
Q ss_pred ChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCC
Q 046820 260 TMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDR 339 (350)
Q Consensus 260 ~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~ 339 (350)
++.+|.++|...++...-.|+.+|-.+.+++| .....++.+...+..|..++.....+..|+|..++++.......+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG---~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCG---KRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC---HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 35778888877788889999999999999987 357778888888888777776545689999976666665554443
Q ss_pred CC
Q 046820 340 LE 341 (350)
Q Consensus 340 ~~ 341 (350)
+|
T Consensus 115 ~~ 116 (144)
T cd03568 115 DP 116 (144)
T ss_pred Cc
Confidence 33
No 86
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=81.69 E-value=4 Score=33.12 Aligned_cols=55 Identities=9% Similarity=0.219 Sum_probs=41.2
Q ss_pred HHHHHHHHHhC-CHhhHHHhhcCCCChHHHHHHHh--ccChhHHHHHHHHHHHHccccc
Q 046820 236 SALSVLDGICS-TDCGRENANDKPLTMPVVVKKIL--RVSELATELSVSILWKLCMNEK 291 (350)
Q Consensus 236 ~aL~vL~~L~~-~~eGr~ai~~~~~~v~~lv~~l~--~~S~~~~E~Av~iL~~Lc~~~~ 291 (350)
..+.++.+||- +++-...+ .+.++||.++.... ..+|-.+|+|+-++-+||..+.
T Consensus 5 ~lvrlianl~~~~~~~Qd~v-r~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 5 DLVRLIANLCYKNKEVQDLV-RELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHhCCHHHHHHH-HHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 35667777765 45555566 47778999988743 3578899999999999999764
No 87
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=81.69 E-value=10 Score=32.45 Aligned_cols=71 Identities=18% Similarity=0.132 Sum_probs=53.4
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYH 229 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~ 229 (350)
.++..|.+=|.++++.....|..+|..+..... ..+...|++ .+++..|++++.+..+++-++-.+..+.+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG-~~fh~evas-~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 111 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCG-THFHDEVAS-REFMDELKDLIKTTKNEEVRQKILELIQA 111 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC-HHHHHHHhh-HHHHHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 477778888889999999999999999997753 456777866 89999999999875455444444444433
No 88
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=80.85 E-value=15 Score=32.00 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=73.9
Q ss_pred chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCcc--ccchhhccCchHHHHHHHHhcccc--ccccchHHHHHHHH
Q 046820 62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESES--NKSCIVDNAAVSVLAAAFESFSKT--CLDENVSVLEEILS 137 (350)
Q Consensus 62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~--nR~~i~~aGai~~Lv~lL~~~~~~--~~~~~~~~~e~Al~ 137 (350)
.....++..+.... ...+.+..|+..-+.++. -+.++ +.|++..|+.+|..+... ..+.+...+.+.+.
T Consensus 66 ~~p~~~i~~L~~~~------~~~~~L~~L~v~Lrt~~~~Wv~~Fl-~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~ 138 (187)
T PF06371_consen 66 SSPEWYIKKLKSRP------STSKILKSLRVSLRTNPISWVQEFL-ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLR 138 (187)
T ss_dssp HHHHHHHHHHTTT--------HHHHHHHHHHHHHHS-HHHHHHH--HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHccC------ccHHHHHHHHHHhccCCchHHHHhc-cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHH
Confidence 34556777776532 122677777766665432 23333 568899999999753211 00123466777888
Q ss_pred HHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 046820 138 TLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTEL 184 (350)
Q Consensus 138 ~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~L 184 (350)
+|..++........++..++.+..|+..|.+.+...|..+.-+|-.+
T Consensus 139 Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 139 CLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 88855543333345667899999999999999999999988877655
No 89
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.73 E-value=40 Score=32.92 Aligned_cols=140 Identities=13% Similarity=0.086 Sum_probs=84.1
Q ss_pred chHHHHHHHHHHHhhCCCChhhHhhcc-cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHH
Q 046820 128 NVSVLEEILSTLILLFPLEGEALTHLG-SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEA 206 (350)
Q Consensus 128 ~~~~~e~Al~~L~~~Ls~~~e~k~~i~-~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~ 206 (350)
++.++..|+..|+ .|.-. ..+.... +...++.+..++..-.. -+.|+.+|-+++.. +..+..+-. .++.-
T Consensus 16 sP~v~~~AV~~l~-~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~---~~l~~~ll~--~~~k~ 86 (353)
T KOG2973|consen 16 SPPVRKAAVEHLL-GLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK---EELRKKLLQ--DLLKV 86 (353)
T ss_pred ChHHHHHHHHHHh-hcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh---HHHHHHHHH--HHHHH
Confidence 3668888888888 56533 2222222 34467778887765333 45689999999965 355555523 48888
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcC-----CCChHHHHHHHhccCh---hHHHH
Q 046820 207 LFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDK-----PLTMPVVVKKILRVSE---LATEL 278 (350)
Q Consensus 207 LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~-----~~~v~~lv~~l~~~S~---~~~E~ 278 (350)
++.++-++.++ +.+.+..+|.||+.-+.+..++... ..++.-+++..-+.+. ..=+|
T Consensus 87 l~~~~~~p~~~---------------lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~y 151 (353)
T KOG2973|consen 87 LMDMLTDPQSP---------------LADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHY 151 (353)
T ss_pred HHHHhcCcccc---------------hHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhH
Confidence 88888877443 2334444555555544444443321 1456666665554332 34578
Q ss_pred HHHHHHHHccccc
Q 046820 279 SVSILWKLCMNEK 291 (350)
Q Consensus 279 Av~iL~~Lc~~~~ 291 (350)
-+.++.+|.++..
T Consensus 152 lA~vf~nls~~~~ 164 (353)
T KOG2973|consen 152 LAPVFANLSQFEA 164 (353)
T ss_pred HHHHHHHHhhhhh
Confidence 8889999988753
No 90
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=80.45 E-value=14 Score=31.05 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=51.7
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC--CChHHHHHHHHHHH
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP--ISPTATKAALVVIY 228 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~--~~~~a~k~Al~aL~ 228 (350)
.+++.|-+=|+++++.....|..+|..+..... ..+...|++ ..++..|++++.+. .+++-++-.+..+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg-~~f~~~i~s-~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~ 108 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCG-KPFHLQVAD-KEFLLELVKIAKNSPKYDPKVREKALELIL 108 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC-hHHHHHHhh-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 367777777889999999999999999998754 457778866 68888899999863 34444343333333
No 91
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=80.34 E-value=72 Score=32.54 Aligned_cols=206 Identities=14% Similarity=0.121 Sum_probs=122.1
Q ss_pred CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC-CChhhH-hhccc
Q 046820 78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP-LEGEAL-THLGS 155 (350)
Q Consensus 78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k-~~i~~ 155 (350)
.+.....+|++-|.+.-..++.-|..+++.|..+.++..|+.+.+. ..+.++.=-...+|+ ++. ...+.+ +.+.+
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~--~~~~d~~Fl~~RLLF-LlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDS--SQPSDVEFLDSRLLF-LLTALRPDDRKKLIEE 120 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccccc--CCChhHHHHHHHHHH-HHhcCChhHHHHHHHH
Confidence 3556778999999999999999999999999999999999854221 012334444667777 454 344444 44445
Q ss_pred CCcHHHHHHHHccC-----------------CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC----
Q 046820 156 ASSMGCMIWFLNSG-----------------DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP---- 214 (350)
Q Consensus 156 ~~~l~~Lv~~L~~g-----------------s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~---- 214 (350)
.+.++.|+..|..- ..+.=..+..++|++..... .... ..-.+.++.|+.+++.-
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~--~~~~--~~~~~~~~~l~~il~~~l~~~ 196 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP--KSVP--EEFSPSIPHLVSILRRLLPPP 196 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC--cccc--hhhhHHHHHHHHHHHHHhccC
Confidence 56777777666431 11222356788888864432 1110 01134445555444311
Q ss_pred ----CChHHHHHHHHHHHHhhhh--------------------H------------------------H---HHHHHHHH
Q 046820 215 ----ISPTATKAALVVIYHTIAS--------------------S------------------------A---SALSVLDG 243 (350)
Q Consensus 215 ----~~~~a~k~Al~aL~~L~~~--------------------~------------------------e---~aL~vL~~ 243 (350)
.-..-...++.+|.|+... + + --|.+|..
T Consensus 197 ~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~ 276 (446)
T PF10165_consen 197 PSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTR 276 (446)
T ss_pred CCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHH
Confidence 1123445667777777210 0 0 34566666
Q ss_pred HhCC-HhhHHHhhc--------------CCCCh-HHHHHHHhccChhHHHHHHHHHHHHcccc
Q 046820 244 ICST-DCGRENAND--------------KPLTM-PVVVKKILRVSELATELSVSILWKLCMNE 290 (350)
Q Consensus 244 L~~~-~eGr~ai~~--------------~~~~v-~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~ 290 (350)
++.. .+-|..+.. ....+ .-|++.|....+.-++.+...||.||..+
T Consensus 277 ~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 277 LARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 6665 344444432 12233 44566565555788999999999999854
No 92
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=79.10 E-value=13 Score=40.28 Aligned_cols=93 Identities=23% Similarity=0.254 Sum_probs=72.2
Q ss_pred ccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHH
Q 046820 126 DENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIE 205 (350)
Q Consensus 126 ~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~ 205 (350)
+.++.++--|++.|. .+..++ ++ ...++++.+.|.+++...|.+|+..+.++-..+ .+.+. + .|.+.
T Consensus 103 d~N~~iR~~AlR~ls-~l~~~e----l~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~---~-~g~~~ 169 (757)
T COG5096 103 DPNEEIRGFALRTLS-LLRVKE----LL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYH---E-LGLID 169 (757)
T ss_pred CCCHHHHHHHHHHHH-hcChHH----HH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--Hhhhh---c-ccHHH
Confidence 347888888999998 454332 11 236899999999999999999999999998653 23332 3 57888
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820 206 ALFKLIEEPISPTATKAALVVIYHTIA 232 (350)
Q Consensus 206 ~LV~lL~~~~~~~a~k~Al~aL~~L~~ 232 (350)
.+..++.|. +|.-+.+|+.+|+.+..
T Consensus 170 ~l~~l~~D~-dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 170 ILKELVADS-DPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHhhCC-CchHHHHHHHHHHHhch
Confidence 888999876 78899999999999864
No 93
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=78.12 E-value=13 Score=29.75 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=48.8
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHT 230 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L 230 (350)
.+++++..+...+...|..|+-.|++++.... -..+..-+.++..|.+++.|. ++ .++.|...|-+|
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~----~~~l~~f~~IF~~L~kl~~D~-d~-~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVAR----GEILPYFNEIFDALCKLSADP-DE-NVRSAAELLDRL 94 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCC-ch-hHHHHHHHHHHH
Confidence 57888888888899999999999999986531 122323478999999999876 33 355555555444
No 94
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=78.06 E-value=5 Score=27.84 Aligned_cols=52 Identities=21% Similarity=0.055 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhCCCC-hh-hHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 046820 130 SVLEEILSTLILLFPLE-GE-ALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTEL 184 (350)
Q Consensus 130 ~~~e~Al~~L~~~Ls~~-~e-~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~L 184 (350)
.+++.|+.+|- .+.-. .+ .+. ..+..++.|+..|+..+.+.|.+|+..|-+|
T Consensus 2 ~vR~~A~~aLg-~l~~~~~~~~~~--~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALG-RLAEGCPELLQP--YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHH-CTTTTTHHHHHH--HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHh-hHhcccHHHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46788888887 45422 21 122 2346899999999888889999999988654
No 95
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=77.24 E-value=18 Score=31.03 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=49.0
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP 217 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~ 217 (350)
.++..|.+=|.++++.....|..+|..+..... ..+...|++ .+++..|++++.+..++
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evas-k~Fl~eL~kl~~~~~~~ 95 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCG-KRFHQEVAS-RDFTQELKKLINDRVHP 95 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHhh-HHHHHHHHHHhcccCCH
Confidence 477888888889999999999999999998754 567777866 89999999999876444
No 96
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=77.20 E-value=50 Score=37.53 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCCchhHHhhhhch---hhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHH
Q 046820 176 NAVLLLTELVSSDSDQRKVNVLSEN---EGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRE 252 (350)
Q Consensus 176 ~Aa~lL~~Ls~~~~~~~~~~~Ig~~---~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ 252 (350)
-+..+|.+|.+.. ++.....|+. -|.++-+...|+...+++..+ .||.++..+-...+-..
T Consensus 1744 m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~--------------LaL~Vi~~~Tan~~Cv~ 1807 (2235)
T KOG1789|consen 1744 MTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQI--------------LALQVILLATANKECVT 1807 (2235)
T ss_pred HHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHH--------------HHHHHHHHHhcccHHHH
Confidence 3455566665433 2333333332 244555555665554554444 45555555555555555
Q ss_pred HhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHH
Q 046820 253 NANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKL 332 (350)
Q Consensus 253 ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~ 332 (350)
.|. ..+.+-.|+. |+-.-+..++.+..+|++|.+.. +...++++.|++.-++..+-...++..|..|++||--
T Consensus 1808 ~~a-~~~vL~~LL~-lLHS~PS~R~~vL~vLYAL~S~~-----~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaK 1880 (2235)
T KOG1789|consen 1808 DLA-TCNVLTTLLT-LLHSQPSMRARVLDVLYALSSNG-----QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAK 1880 (2235)
T ss_pred HHH-hhhHHHHHHH-HHhcChHHHHHHHHHHHHHhcCc-----HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHH
Confidence 554 3344444444 33445667799999999999864 5888999999888888777666678999999999987
Q ss_pred HHh
Q 046820 333 MNL 335 (350)
Q Consensus 333 l~~ 335 (350)
|..
T Consensus 1881 l~A 1883 (2235)
T KOG1789|consen 1881 LQA 1883 (2235)
T ss_pred hhh
Confidence 765
No 97
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.88 E-value=18 Score=30.40 Aligned_cols=59 Identities=17% Similarity=0.090 Sum_probs=47.8
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP 217 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~ 217 (350)
.++..|-+=|+++++.....|..+|..+..... ..+...|++ .+++..|++++.+..+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg-~~f~~ev~s-~~fl~~L~~l~~~~~~~ 95 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCG-SKFHLEVAS-KEFLNELVKLIKPKYPL 95 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHh-HHHHHHHHHHHcCCCCc
Confidence 367777777888999999999999999997754 467777865 89999999999876443
No 98
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=76.74 E-value=33 Score=30.94 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhCCHhhHHHhhcCC---------------CChHHHHHHHhccC------hhHHHHHHHHHHHHcccccc
Q 046820 234 SASALSVLDGICSTDCGRENANDKP---------------LTMPVVVKKILRVS------ELATELSVSILWKLCMNEKR 292 (350)
Q Consensus 234 ~e~aL~vL~~L~~~~eGr~ai~~~~---------------~~v~~lv~~l~~~S------~~~~E~Av~iL~~Lc~~~~~ 292 (350)
.+.+..+|.||..+++|...++... ..+..|++.+.++. ...-+|.+.+|.++.+..
T Consensus 12 adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~-- 89 (192)
T PF04063_consen 12 ADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP-- 89 (192)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH--
Confidence 4678888888888888888665422 35677777776632 234689999999999863
Q ss_pred chHHHHHHHH--hhch--HHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 293 EEKTAFVEAL--QVGA--FQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 293 ~~~~~~~~~~--~~G~--v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
+.++-.+ +.+. +++|+...+.. +.--|+-+...+|.+.-
T Consensus 90 ---~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccF 132 (192)
T PF04063_consen 90 ---EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCF 132 (192)
T ss_pred ---HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhc
Confidence 4555555 5556 88988777766 55556666666666543
No 99
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.65 E-value=21 Score=30.08 Aligned_cols=78 Identities=12% Similarity=0.070 Sum_probs=57.2
Q ss_pred hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCc-hHHHHHHHHHHHHHHhccCC
Q 046820 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCA-ERTKEKASEVLKLMNLHRDR 339 (350)
Q Consensus 261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t-~~ak~kA~~LLk~l~~~~~~ 339 (350)
+..|-++|...++...-.|+.+|=.+.+++| .....++.+...+..|..++....+ +..|+|+.+++.......++
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg---~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCG---SKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC---HHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 4667788888889999999999999999886 3567777777777877766654333 34899977777766665444
Q ss_pred CC
Q 046820 340 LE 341 (350)
Q Consensus 340 ~~ 341 (350)
+|
T Consensus 116 ~~ 117 (133)
T smart00288 116 DP 117 (133)
T ss_pred CC
Confidence 44
No 100
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=76.59 E-value=1.1e+02 Score=32.39 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=106.9
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh---
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS--- 233 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~--- 233 (350)
..++.+.++|..++...+..|+.-+..+.... .-..+ ...+++..|-+.+++..+..-..+++-+.-.++.+
T Consensus 134 ~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~----~i~~~-~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~ 208 (569)
T KOG1242|consen 134 YVLELLLELLTSTKIAERAGAAYGLAGLVNGL----GIESL-KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP 208 (569)
T ss_pred HHHHHHHHHhccccHHHHhhhhHHHHHHHcCc----HHhhh-hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC
Confidence 47888899999889999999999999987542 22334 33789999999998764432222333222222210
Q ss_pred ------------------------HHHHHHHHHHHhCC--HhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHc
Q 046820 234 ------------------------SASALSVLDGICST--DCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLC 287 (350)
Q Consensus 234 ------------------------~e~aL~vL~~L~~~--~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc 287 (350)
.+.+..+...+..| +.|...+ +|.++.-|+...=+.|.+++..|..+.
T Consensus 209 ~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~l------lpsll~~l~~~kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 209 PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLL------LPSLLGSLLEAKWRTKMASLELLGAMA 282 (569)
T ss_pred CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHh------hhhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 13444444444333 3343333 455555555555588999999999887
Q ss_pred cccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCC
Q 046820 288 MNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDR 339 (350)
Q Consensus 288 ~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~ 339 (350)
.... ...+.--..++++|-..|. +.-+..|+-+.+.|.-+..+-++
T Consensus 283 ~~ap-----~qLs~~lp~iiP~lsevl~-DT~~evr~a~~~~l~~~~svidN 328 (569)
T KOG1242|consen 283 DCAP-----KQLSLCLPDLIPVLSEVLW-DTKPEVRKAGIETLLKFGSVIDN 328 (569)
T ss_pred Hhch-----HHHHHHHhHhhHHHHHHHc-cCCHHHHHHHHHHHHHHHHhhcc
Confidence 7543 3344445667888877776 54688899988888888775543
No 101
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=76.16 E-value=21 Score=30.46 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=55.8
Q ss_pred ChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh-----cCchHHHHHHHHHHHHHH
Q 046820 260 TMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV-----GCAERTKEKASEVLKLMN 334 (350)
Q Consensus 260 ~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~-----~~t~~ak~kA~~LLk~l~ 334 (350)
++.++.++|...++...-.|..+|=.+.+++| .....+..+...+.-|+.++.. ...+..|+|.-+|++.-.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG---~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCG---ERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC---HHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45677888877888888999999999999887 3577777788888888887752 235789999666665554
Q ss_pred hcc
Q 046820 335 LHR 337 (350)
Q Consensus 335 ~~~ 337 (350)
...
T Consensus 116 ~~f 118 (139)
T cd03567 116 LEL 118 (139)
T ss_pred HHh
Confidence 433
No 102
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=76.01 E-value=93 Score=31.46 Aligned_cols=28 Identities=4% Similarity=-0.179 Sum_probs=14.7
Q ss_pred CChHHHHHHHhccChhHHHHHHHHHHHH
Q 046820 259 LTMPVVVKKILRVSELATELSVSILWKL 286 (350)
Q Consensus 259 ~~v~~lv~~l~~~S~~~~E~Av~iL~~L 286 (350)
.+++.|...+...++..+..|+..|..+
T Consensus 178 ~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 178 LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 3455555444444555566666665444
No 103
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=72.99 E-value=11 Score=31.35 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=50.5
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL 141 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~ 141 (350)
+..|+.-|..+. |+....-|..+|..+++..+.-|..+.+.|+-..+..++. ++ +++++.+|+-++..
T Consensus 45 lk~L~~lL~~s~---d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~---h~----d~eVr~eAL~avQk 112 (119)
T PF11698_consen 45 LKKLIKLLDKSD---DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN---HE----DPEVRYEALLAVQK 112 (119)
T ss_dssp HHHHHHHH-SHH---HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS----S----SHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC---CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc---CC----CHHHHHHHHHHHHH
Confidence 555555553332 4444556999999999999999999988899999999996 33 58899999888763
No 104
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=71.82 E-value=20 Score=33.70 Aligned_cols=136 Identities=17% Similarity=0.195 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC----CChHHHHHHHHHHHHhhhhHHHHHHHHHHHhC
Q 046820 171 LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP----ISPTATKAALVVIYHTIASSASALSVLDGICS 246 (350)
Q Consensus 171 ~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~----~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~ 246 (350)
..-|+||..+|-+++-.-|=..+-+.| . .-++.+|+.-.-.+ .+|...- .-....+.-+.||.+|..||-
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I-~-~PildGLLHWaVcpsa~A~Dpfp~~----~~~~~lSPqrlaLEaLcKLsV 153 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESI-A-RPILDGLLHWAVCPSAEAQDPFPTA----GPHSPLSPQRLALEALCKLSV 153 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHH-H-HHHHHHHHHHHhccchhccCCCCCC----CCCCCCCHHHHHHHHHHHhhe
Confidence 356788998888887432211334444 2 34555555444321 1110000 000000123567777777776
Q ss_pred CHhhHHHhhcCCC------ChHHHHHHHh-ccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHH
Q 046820 247 TDCGRENANDKPL------TMPVVVKKIL-RVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQ 315 (350)
Q Consensus 247 ~~eGr~ai~~~~~------~v~~lv~~l~-~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq 315 (350)
.+....-|++.+. -+..|++.+- +.....+|.|+.+|.++|..+ +..++..+.+.+.|..|+.-+.
T Consensus 154 ~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~---~~~~r~iA~q~~~i~~Li~FiE 226 (257)
T PF12031_consen 154 IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGD---EAAARAIAMQKPCISHLIAFIE 226 (257)
T ss_pred eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhccc---HHHHHHHHHhhchHHHHHHHHH
Confidence 6544433433322 1233344332 245678999999999999964 2456677779999999987775
No 105
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=71.59 E-value=24 Score=28.17 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=47.9
Q ss_pred ChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHH--hhchHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820 260 TMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEAL--QVGAFQKLLVLLQVGCAERTKEKASEVLKLMN 334 (350)
Q Consensus 260 ~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~--~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~ 334 (350)
.+++++..+.....+.+.+|...|.++++..+ .+++ -.-+|..|..++. +..+..|.-|.-|-++|+
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~-------~~~l~~f~~IF~~L~kl~~-D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVAR-------GEILPYFNEIFDALCKLSA-DPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHhc
Confidence 36777777767778999999999999998643 2333 2346776665444 656788888877777765
No 106
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=71.04 E-value=99 Score=29.54 Aligned_cols=148 Identities=18% Similarity=0.145 Sum_probs=79.8
Q ss_pred CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcC
Q 046820 108 AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSS 187 (350)
Q Consensus 108 Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~ 187 (350)
-.++.+..++. +. +..+.-.|...|. .+ ....+++.+..+|...+...|..|+..|-.
T Consensus 43 ~~~~~~~~~l~---~~----~~~vr~~aa~~l~-~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~---- 100 (335)
T COG1413 43 EAADELLKLLE---DE----DLLVRLSAAVALG-EL----------GSEEAVPLLRELLSDEDPRVRDAAADALGE---- 100 (335)
T ss_pred hhHHHHHHHHc---CC----CHHHHHHHHHHHh-hh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHc----
Confidence 35666777664 11 2344555544443 11 122467777777777777666666662222
Q ss_pred CCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCC--------------------
Q 046820 188 DSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICST-------------------- 247 (350)
Q Consensus 188 ~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~-------------------- 247 (350)
+|. +..++.|+.++.+..+......+..+|..+-... ....++..+..-
T Consensus 101 ---------~~~-~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 101 ---------LGD-PEAVPPLVELLENDENEGVRAAAARALGKLGDER-ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ---------cCC-hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 223 5666777777764324455566666666663211 111222222221
Q ss_pred HhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccc
Q 046820 248 DCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMN 289 (350)
Q Consensus 248 ~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~ 289 (350)
.+....+ .++..++.+.+.+.......+..|+..|..+...
T Consensus 170 ~~~l~~~-~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 170 AEALGEL-GDPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHc-CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 1111112 4666778888877776777777888888777664
No 107
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=70.66 E-value=1.2e+02 Score=30.27 Aligned_cols=239 Identities=11% Similarity=0.090 Sum_probs=139.1
Q ss_pred hHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHH
Q 046820 81 VGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMG 160 (350)
Q Consensus 81 ~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~ 160 (350)
+.+..+++-+|-+..+ +..=..+.+.+.--.++.-|.. +. .+..-+|+|+......+.+.+..+. ...+.+.
T Consensus 40 ~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~--~~---~~~~ER~QALkliR~~l~~~~~~~~--~~~~vvr 111 (371)
T PF14664_consen 40 EVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDR--DN---KNDVEREQALKLIRAFLEIKKGPKE--IPRGVVR 111 (371)
T ss_pred HHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcc--cC---CChHHHHHHHHHHHHHHHhcCCccc--CCHHHHH
Confidence 4445566666666655 4455566666656666666641 11 1222367888888765554322111 1456899
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH------
Q 046820 161 CMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS------ 234 (350)
Q Consensus 161 ~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~------ 234 (350)
+||.+..+.+..-|.-|..+|.+|+-.+ ++ .+.. .|.+..|++.+-++. .+.....+.+++++..+.
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~~--P~---lv~~-~gG~~~L~~~l~d~~-~~~~~~l~~~lL~lLd~p~tR~yl 184 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALLN--PE---LVAE-CGGIRVLLRALIDGS-FSISESLLDTLLYLLDSPRTRKYL 184 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhC--HH---HHHH-cCCHHHHHHHHHhcc-HhHHHHHHHHHHHHhCCcchhhhh
Confidence 9999999888888999999999998553 23 3323 678889998888763 335555666666663210
Q ss_pred ------HH------------------------HHHHHHHHhCCHhhHHHhhcCC-CChHHHHHHHhccChhHHHHHHHHH
Q 046820 235 ------AS------------------------ALSVLDGICSTDCGRENANDKP-LTMPVVVKKILRVSELATELSVSIL 283 (350)
Q Consensus 235 ------e~------------------------aL~vL~~L~~~~eGr~ai~~~~-~~v~~lv~~l~~~S~~~~E~Av~iL 283 (350)
+. +-.++..+-..=.|--.+..+. .++..+|..+.--++..++.-..+|
T Consensus 185 ~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll 264 (371)
T PF14664_consen 185 RPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLL 264 (371)
T ss_pred cCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 1111111111122333333232 4666666666555555566666666
Q ss_pred HHHccccccch--------------------------------------------H---H-HHHHHHhhchHHHHHHHHH
Q 046820 284 WKLCMNEKREE--------------------------------------------K---T-AFVEALQVGAFQKLLVLLQ 315 (350)
Q Consensus 284 ~~Lc~~~~~~~--------------------------------------------~---~-~~~~~~~~G~v~~LL~llq 315 (350)
..+-+-....+ + . ...-.++.|.++.|+.++.
T Consensus 265 ~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~ 344 (371)
T PF14664_consen 265 FDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIE 344 (371)
T ss_pred HHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHh
Confidence 55443211100 0 0 1222348999999999888
Q ss_pred hcCchHHHHHHHHHHHHHH
Q 046820 316 VGCAERTKEKASEVLKLMN 334 (350)
Q Consensus 316 ~~~t~~ak~kA~~LLk~l~ 334 (350)
....+..++||+-||..+-
T Consensus 345 ~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 345 SSEDSSLSRKATLLLGELL 363 (371)
T ss_pred cCCCchHHHHHHHHHHHHH
Confidence 7656889999998887543
No 108
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=70.43 E-value=32 Score=29.33 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=46.2
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcC
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEE 213 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~ 213 (350)
.++..|.+=|.++++.....|..+|..+..... ..+...|++ .+++..|++++..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evas-~~Fl~el~kl~~~ 92 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCG-ERFHSEVGK-FRFLNELIKLVSP 92 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHHh-HHHHHHHHHHhcc
Confidence 467778888889999999999999999997754 567778866 8999999999964
No 109
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=70.35 E-value=29 Score=31.30 Aligned_cols=76 Identities=18% Similarity=0.116 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHH---hccChhHHHHHHHHHHHHccccccchHHHHHHHH--h-hchHH
Q 046820 235 ASALSVLDGICSTDCGRENANDKPLTMPVVVKKI---LRVSELATELSVSILWKLCMNEKREEKTAFVEAL--Q-VGAFQ 308 (350)
Q Consensus 235 e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l---~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~--~-~G~v~ 308 (350)
+....+|.|++.+++||.-++.....+.++-+++ ...|..-+.-+++++-|.|-... .-...+ + ..+++
T Consensus 76 ~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~-----~H~~LL~~~~~~iLp 150 (192)
T PF04063_consen 76 DYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTD-----SHEWLLSDDEVDILP 150 (192)
T ss_pred hHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHh-----HHHHhcCchhhhhHH
Confidence 4678899999999999999997666665443333 23467778899999999887431 112222 2 57888
Q ss_pred HHHHHHH
Q 046820 309 KLLVLLQ 315 (350)
Q Consensus 309 ~LL~llq 315 (350)
.||.-|-
T Consensus 151 ~LLlPLa 157 (192)
T PF04063_consen 151 YLLLPLA 157 (192)
T ss_pred HHHhhcc
Confidence 8776654
No 110
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=70.21 E-value=11 Score=23.13 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820 203 AIEALFKLIEEPISPTATKAALVVIYHTIA 232 (350)
Q Consensus 203 ~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~ 232 (350)
++|.++++++|+ +++-...|..+|.+++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 478899999987 77888888888888764
No 111
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=68.67 E-value=1.1e+02 Score=29.09 Aligned_cols=152 Identities=20% Similarity=0.154 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC---C-ChHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 046820 169 GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP---I-SPTATKAALVVIYHTIASSASALSVLDGI 244 (350)
Q Consensus 169 gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~---~-~~~a~k~Al~aL~~L~~~~e~aL~vL~~L 244 (350)
-+++.|++|..-|..--+.- ++....+=...|.+..|++=+-+- . ++..+. ..--.+ --||++|-.+
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~--~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~---~~snRV----cnaLaLlQ~v 77 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESF--PDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTA---RQSNRV----CNALALLQCV 77 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---H---HHHHHH----HHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHhhhcc--cchhHHHHcCCChHHHHHHHHHHHcccCCCcccCH---HHHHHH----HHHHHHHHHH
Confidence 35778888766555443222 245545545578887777433221 0 111000 011111 3689999999
Q ss_pred hCCHhhHHHhhcCCCChHHHHHHHhccC-hhH----HHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCc
Q 046820 245 CSTDCGRENANDKPLTMPVVVKKILRVS-ELA----TELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCA 319 (350)
Q Consensus 245 ~~~~eGr~ai~~~~~~v~~lv~~l~~~S-~~~----~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t 319 (350)
++++|-|..++ .+...--+--.+...+ .+. +=.+.+|...+.+. ++.++..-.++...++-.|..|..| +
T Consensus 78 Ashpetr~~Fl-~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~---d~~evi~fLl~tEiiplcLr~me~G-s 152 (262)
T PF04078_consen 78 ASHPETRMPFL-KAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKT---DDPEVISFLLQTEIIPLCLRIMEFG-S 152 (262)
T ss_dssp HH-TTTHHHHH-HTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT-----HHHHHHHHCTTHHHHHHHHHHHS--
T ss_pred HcChHHHHHHH-HcCchhhehhhhhccccccccchhhHhHHHHHHHHHcC---CcHHHHHHHHhhchHHHHHHHHHhc-c
Confidence 99999999997 3442222233332222 222 33467777777774 3467888888999999888888875 8
Q ss_pred hHHHHHHHHHHHHHH
Q 046820 320 ERTKEKASEVLKLMN 334 (350)
Q Consensus 320 ~~ak~kA~~LLk~l~ 334 (350)
.-.|-.|.-+++-+-
T Consensus 153 elSKtvAtfIlqKIL 167 (262)
T PF04078_consen 153 ELSKTVATFILQKIL 167 (262)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999886543
No 112
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=68.37 E-value=80 Score=27.44 Aligned_cols=118 Identities=20% Similarity=0.246 Sum_probs=73.4
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA 237 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a 237 (350)
.+..+..+|++.+.+.|-.++.++.-+....+ .-..+....-.+..|+.+|+++.++...+.+..+|-.+.
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~---~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~------ 96 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS---WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF------ 96 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH------
Confidence 45667888999999999999999998885431 222223335688999999998756656666666665553
Q ss_pred HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccCh--hHHHHHHHHHHHHcccc
Q 046820 238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSE--LATELSVSILWKLCMNE 290 (350)
Q Consensus 238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~--~~~E~Av~iL~~Lc~~~ 290 (350)
..+.+.++-..++. .+ .+|.++..+..-.. ...+.+...|..+-...
T Consensus 97 ----~~~~~~p~l~Rei~-tp-~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 97 ----DLIRGKPTLTREIA-TP-NLPKFIQSLLQLLQDSSCPETALDALATLLPHH 145 (165)
T ss_pred ----HHhcCCCchHHHHh-hc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHC
Confidence 23334444333332 22 25666665554333 55666666666655433
No 113
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=68.25 E-value=1.5 Score=48.16 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=25.9
Q ss_pred CCccccc-cccccccCCcccCCCCCCcccCCccc
Q 046820 18 QPARKET-GASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 18 ~~~~~~~-~~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
+||-..+ .---+|+|||.++ .+|+|-||+-|+
T Consensus 867 vpdef~DPlm~Tlm~dPV~LP-~Srv~vDRsti~ 899 (943)
T KOG2042|consen 867 VPDEFLDPLMSTLMSDPVVLP-SSRVTVDRSTIE 899 (943)
T ss_pred CchhhhCccccccCCCCccCC-cccccccHHHHH
Confidence 7775444 4558999999996 379999999999
No 114
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=68.02 E-value=12 Score=22.92 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=24.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhc
Q 046820 159 MGCMIWFLNSGDLSRRRNAVLLLTELVS 186 (350)
Q Consensus 159 l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~ 186 (350)
++.+...|...+++.|..|+..|-.+..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999998864
No 115
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.69 E-value=1.5e+02 Score=30.41 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=22.1
Q ss_pred hcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 046820 152 HLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELV 185 (350)
Q Consensus 152 ~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls 185 (350)
++.+-.++++++.+|.+.+.+.-...+-+|.+|.
T Consensus 120 ~lveln~V~slL~LLgHeNtDI~iavvdLLqELT 153 (536)
T KOG2734|consen 120 ILVELNAVQSLLELLGHENTDIAIAVVDLLQELT 153 (536)
T ss_pred HHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhh
Confidence 4445567777777777766666566666666665
No 116
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=66.98 E-value=1.8e+02 Score=31.01 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=19.6
Q ss_pred cCchHHHHHHHHHHHHHHhccCCCCCCC
Q 046820 317 GCAERTKEKASEVLKLMNLHRDRLECVD 344 (350)
Q Consensus 317 ~~t~~ak~kA~~LLk~l~~~~~~~~c~~ 344 (350)
+-.+..|.+|.-+|+.++. .+.|+|
T Consensus 537 D~DdeVRdrAsf~l~~~~~---~da~~p 561 (898)
T COG5240 537 DQDDEVRDRASFLLRNMRL---SDACEP 561 (898)
T ss_pred cccHHHHHHHHHHHHhhhh---hhhhhc
Confidence 4467899999999999985 345766
No 117
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=66.87 E-value=47 Score=31.47 Aligned_cols=98 Identities=10% Similarity=0.070 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHH
Q 046820 82 GCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGC 161 (350)
Q Consensus 82 ~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~ 161 (350)
....|++-|.-++=-++..|.++.+...+..|+.+|... . .+.++-.++.+|...|-=+..|.+...+-+++..
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~-~-----~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~ 180 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS-N-----PPAIQSACLDTLVCILLDSPENQRDFEELNGLST 180 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC-C-----CchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHH
Confidence 345588899999989999999999999999999999521 1 2557777777777433323377777778899999
Q ss_pred HHHHHccC--CHHHHHHHHHHHHHHh
Q 046820 162 MIWFLNSG--DLSRRRNAVLLLTELV 185 (350)
Q Consensus 162 Lv~~L~~g--s~~~r~~Aa~lL~~Ls 185 (350)
++.++++. +.+.|...+-.|+...
T Consensus 181 v~~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 181 VCSLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HHHHHccccccHHHhHHHHHHHHHHH
Confidence 99999986 4566666666555544
No 118
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=66.41 E-value=1.2e+02 Score=28.67 Aligned_cols=190 Identities=15% Similarity=0.185 Sum_probs=114.0
Q ss_pred cCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHh-ccccccccchHHHHHHHHHHHhh--CC-CChhhHhh
Q 046820 77 TQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFES-FSKTCLDENVSVLEEILSTLILL--FP-LEGEALTH 152 (350)
Q Consensus 77 ~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~-~~~~~~~~~~~~~e~Al~~L~~~--Ls-~~~e~k~~ 152 (350)
+.|...+.+|+.-|......-+.+. +. ..-+.+|+.++.+ +. +......++..|..+ +. .+.+.-.
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~--L~-~~ev~~L~~F~~~rl~------D~~~~~~~l~gl~~L~~~~~~~~~~~~- 79 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDF--LS-RQEVQVLLDFFCSRLD------DHACVQPALKGLLALVKMKNFSPESAV- 79 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhh--cc-HHHHHHHHHHHHHHhc------cHhhHHHHHHHHHHHHhCcCCChhhHH-
Confidence 3566777788888887776655433 22 2236788887742 21 122333334444422 22 2221100
Q ss_pred cccCCcHHHHHHHHc--cCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 046820 153 LGSASSMGCMIWFLN--SGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHT 230 (350)
Q Consensus 153 i~~~~~l~~Lv~~L~--~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L 230 (350)
..+..+..-.. +-....|...-.+|..|.... ......+| .+++.++++++....+|+-..-+-..+..+
T Consensus 80 ----~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~--~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 80 ----KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMG--DDFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred ----HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhch--hHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 11222221111 124677888888899887543 12333453 489999999998778998766665555544
Q ss_pred hhh----------------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHH
Q 046820 231 IAS----------------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELAT 276 (350)
Q Consensus 231 ~~~----------------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~ 276 (350)
... .+...++...|++++. + .+-++|.++++|...++..|
T Consensus 152 ~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~----f--a~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 152 LQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL----F--APFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred HHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh----h--HHHHHHHHHHHHcCCCcHHH
Confidence 320 0466677777777542 2 24679999999999999999
Q ss_pred HHHHHHHHHHcccc
Q 046820 277 ELSVSILWKLCMNE 290 (350)
Q Consensus 277 E~Av~iL~~Lc~~~ 290 (350)
..+..+|..-+...
T Consensus 226 ~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 226 LDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHHC
Confidence 99999998766544
No 119
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=66.16 E-value=26 Score=29.60 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=47.0
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP 217 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~ 217 (350)
++..|-+=|+++++.....|..+|..+..... +.+...+++ ..++..|++++.+....
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg-~~f~~ev~~-~~fl~~l~~l~~~~~~~ 100 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCG-PRFHREVAS-KEFLDELVKLIKSKKTD 100 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH-HHHHHHHTS-HHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHhH-HHHHHHHHHHHccCCCC
Confidence 56666677888999999999999999997643 567778877 79999999999876443
No 120
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=65.57 E-value=2.9 Score=42.06 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=48.5
Q ss_pred ccccccCCcccCCCCCCcccCCccc----------cCC-----CCc---------ccCC---------------------
Q 046820 26 ASLIEKDPVTTTPRNGITYDRVNIL----------IEN-----ERI---------IPVC--------------------- 60 (350)
Q Consensus 26 ~~eiM~DPVtl~~~TG~TYDR~sIe----------~PN-----~r~---------~p~~--------------------- 60 (350)
+-|+=++||.- |.||.-|||+=|| |-| |++ .|.+
T Consensus 6 SgEvP~~PVvS-~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~~~v~pk~~satSIPalL~~lQdEWDavM 84 (506)
T KOG0289|consen 6 SGEVPEEPVVS-PVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKVPAQVRPKPPSATSIPALLKTLQDEWDAVM 84 (506)
T ss_pred cCCCCCCcccc-ccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeeccccccccCCCCCccchHHHHHHHHHHHHHHH
Confidence 34677899964 4699999999999 334 222 1111
Q ss_pred ------cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhcc
Q 046820 61 ------SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDN 107 (350)
Q Consensus 61 ------~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~a 107 (350)
..+....-++|+... -..-.|.+-|.+|.||-++.|..+++.
T Consensus 85 L~~F~LRqqL~ttrQELShaL-----YqhDAAcrViaRL~kE~~eareaLa~~ 132 (506)
T KOG0289|consen 85 LESFTLRQQLQTTRQELSHAL-----YQHDAACRVIARLTKERDEAREALAKL 132 (506)
T ss_pred HHhhHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 112333444444443 334467888999999999999888753
No 121
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.59 E-value=2.7e+02 Score=31.88 Aligned_cols=175 Identities=15% Similarity=0.150 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhhCCCC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhc--hhhHHHH
Q 046820 130 SVLEEILSTLILLFPLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSE--NEGAIEA 206 (350)
Q Consensus 130 ~~~e~Al~~L~~~Ls~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~--~~g~i~~ 206 (350)
..+-..+.+|..++... .+....+. ..|+-++-.++.-+..+|.+|-.+|+++... .....-|+ ....|..
T Consensus 712 ~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i----~~~~d~g~e~~~~~lne 785 (1176)
T KOG1248|consen 712 PAQASRLKCLKRLLKLLSAEHCDLIP--KLIPEVILSLKEVNVKARRNAFALLVFIGAI----QSSLDDGNEPASAILNE 785 (1176)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHhcccccHHHHhhHHHHHHHHHHH----HhhhcccccchHHHHHH
Confidence 34555666665333322 24444332 2455555556666899999999999999721 01111111 1235566
Q ss_pred HHHHhcCC--CChHHHHHH-HHHHHHhhh------hHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHH
Q 046820 207 LFKLIEEP--ISPTATKAA-LVVIYHTIA------SSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATE 277 (350)
Q Consensus 207 LV~lL~~~--~~~~a~k~A-l~aL~~L~~------~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E 277 (350)
.+.++..+ .+..-+.++ +.++.++.. .++..-.+++.+|.+ |-..++.-..
T Consensus 786 fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~--------------------L~s~sreI~k 845 (1176)
T KOG1248|consen 786 FLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLY--------------------LASNSREIAK 845 (1176)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--------------------HhcCCHHHHH
Confidence 66666543 222222222 444444431 123333344443332 2234555567
Q ss_pred HHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 278 LSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 278 ~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
.||+.+-.+|...+ +.+. ....+-.++.++.+++ +.+-..|.|.+-||+.|-+
T Consensus 846 aAI~fikvlv~~~p---e~~l-~~~~~~LL~sll~ls~-d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 846 AAIGFIKVLVYKFP---EECL-SPHLEELLPSLLALSH-DHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHHHcCC---HHHH-hhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHH
Confidence 78888777777543 2221 2223335777776555 4477888888888877765
No 122
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=62.55 E-value=1.8e+02 Score=29.42 Aligned_cols=27 Identities=19% Similarity=0.056 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 306 AFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 306 ~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
+++.|+..+. .+..++.|.+-++.+.+
T Consensus 270 av~~L~~~l~---d~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 270 AAPWCLEAMR---EPPWARLAGEAFSLITG 296 (410)
T ss_pred hHHHHHHHhc---CcHHHHHHHHHHHHhhC
Confidence 5665554433 34699999999999988
No 123
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=61.02 E-value=2.1e+02 Score=29.80 Aligned_cols=144 Identities=12% Similarity=0.137 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHHHhcCc---cccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh--hhHhhcc
Q 046820 80 QVGCKDLVAKIKEWAKESE---SNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG--EALTHLG 154 (350)
Q Consensus 80 ~~~~~~Al~~L~~Lak~s~---~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~--e~k~~i~ 154 (350)
.+++..|+--.-.+.|.++ .||+.+-++-..+++=.+|..-+.++...+-....-++++|....+..+ ..++++
T Consensus 25 D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v- 103 (698)
T KOG2611|consen 25 DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV- 103 (698)
T ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH-
Confidence 4788999988889998876 4899999995678999998632111001222234457777764444443 334555
Q ss_pred cCCcHHHHHHHHccC-CHH--H----HHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHH
Q 046820 155 SASSMGCMIWFLNSG-DLS--R----RRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVI 227 (350)
Q Consensus 155 ~~~~l~~Lv~~L~~g-s~~--~----r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL 227 (350)
+.|+.|..++..| +.+ . =..+-..|+..++.. +.....| + .|.++.+-++-.-+.......-|+.++
T Consensus 104 --~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e--~G~~~Li-a-~G~~~~~~Q~y~~~~~~~d~alal~Vl 177 (698)
T KOG2611|consen 104 --SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE--AGLMTLI-A-SGGLRVIAQMYELPDGSHDMALALKVL 177 (698)
T ss_pred --HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC--chhHHHH-h-cCchHHHHHHHhCCCCchhHHHHHHHH
Confidence 4789999999887 322 2 235566777777654 3566677 4 688888887765433333444455554
Q ss_pred HHh
Q 046820 228 YHT 230 (350)
Q Consensus 228 ~~L 230 (350)
.-+
T Consensus 178 ll~ 180 (698)
T KOG2611|consen 178 LLL 180 (698)
T ss_pred HHH
Confidence 433
No 124
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.01 E-value=2.6e+02 Score=30.70 Aligned_cols=181 Identities=13% Similarity=0.127 Sum_probs=108.2
Q ss_pred ccchhhcc--CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhh-HhhcccCCcHHHHHHHHccCCHHHHHH
Q 046820 100 NKSCIVDN--AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEA-LTHLGSASSMGCMIWFLNSGDLSRRRN 176 (350)
Q Consensus 100 nR~~i~~a--Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~-k~~i~~~~~l~~Lv~~L~~gs~~~r~~ 176 (350)
+..+...+ +++|.|+++|-.-.+++-+-+-.....|-..|. ++. +. +..|+. ..++++-.-+++.++..|+-
T Consensus 309 ~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~-l~A---~~~~D~Iv~-~Vl~Fiee~i~~pdwr~rea 383 (859)
T KOG1241|consen 309 SKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLM-LFA---QCVGDDIVP-HVLPFIEENIQNPDWRNREA 383 (859)
T ss_pred hhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHH-HHH---HHhcccchh-hhHHHHHHhcCCcchhhhhH
Confidence 34444444 889999999963211110112334555666665 343 22 223333 57788887888889999999
Q ss_pred HHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH----------------------
Q 046820 177 AVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS---------------------- 234 (350)
Q Consensus 177 Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~---------------------- 234 (350)
|+.++-+....-+ +.....+ +++++|.++++..|+ +-..+..+..+|..++...
T Consensus 384 avmAFGSIl~gp~-~~~Lt~i--V~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 384 AVMAFGSILEGPE-PDKLTPI--VIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN 459 (859)
T ss_pred HHHHHHhhhcCCc-hhhhhHH--HhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh
Confidence 9988888875422 3333334 489999999999966 5556667788888876421
Q ss_pred ------HHHHHHHHHHhCCHhhHHHhhcCC-------CChHHHHHHHhccChh-------HHHHHHHHHHHHcccccc
Q 046820 235 ------ASALSVLDGICSTDCGRENANDKP-------LTMPVVVKKILRVSEL-------ATELSVSILWKLCMNEKR 292 (350)
Q Consensus 235 ------e~aL~vL~~L~~~~eGr~ai~~~~-------~~v~~lv~~l~~~S~~-------~~E~Av~iL~~Lc~~~~~ 292 (350)
..+.-++..|+. +-.+..... --.+.+++.|..+.++ .+-.|-.+|..|.+++.+
T Consensus 460 DePrva~N~CWAf~~Lae---a~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 460 DEPRVASNVCWAFISLAE---AAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred hCchHHHHHHHHHHHHHH---HHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 133344444442 222221111 1345667777665443 356788889888888753
No 125
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=58.76 E-value=1.4e+02 Score=28.10 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHhcCcc-c---cchhhccCchH-HHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhccc
Q 046820 81 VGCKDLVAKIKEWAKESES-N---KSCIVDNAAVS-VLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGS 155 (350)
Q Consensus 81 ~~~~~Al~~L~~Lak~s~~-n---R~~i~~aGai~-~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~ 155 (350)
++|.++|++|..+.+..+. . |+++++.+++. =|+.+|.++.. +..+...++.+|. +|..+-+.- ...
T Consensus 9 ~dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~-----~~~l~~~~l~LLV-~LT~P~~~~--~~~ 80 (266)
T PF04821_consen 9 DDCLECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKD-----DDKLFLACLRLLV-NLTWPIELL--VES 80 (266)
T ss_pred HhHHHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccC-----chHHHHHHHHHHH-HhCCCHHHh--ccC
Confidence 5789999999877766553 3 67788877666 67777763332 3567788888888 786442210 000
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhc
Q 046820 156 ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE 212 (350)
Q Consensus 156 ~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~ 212 (350)
...+...+.+...+...|- .+|..+.. ++++..+++++.
T Consensus 81 -----------~~~~~~~~~~~~~l~~~l~------~yK~afl~-~~~l~~~~~~l~ 119 (266)
T PF04821_consen 81 -----------QPKDKNQRRNIPELLKYLQ------SYKEAFLD-PRVLKALIRLLL 119 (266)
T ss_pred -----------CCCChHHHHHHHHHHHHHH------HHHHHHcc-cHHHHHHHHHHh
Confidence 0013445555555656664 67888766 788888887774
No 126
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.96 E-value=62 Score=34.75 Aligned_cols=143 Identities=15% Similarity=0.176 Sum_probs=86.3
Q ss_pred hhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 046820 104 IVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTE 183 (350)
Q Consensus 104 i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~ 183 (350)
|...|+-.+++.-|. |.--+|++.|++.+. .|+.+.- - -...+++.|+.++...-.+.|..|...|..
T Consensus 369 iI~sGACGA~VhGlE-------DEf~EVR~AAV~Sl~-~La~ssP---~-FA~~aldfLvDMfNDE~~~VRL~ai~aL~~ 436 (823)
T KOG2259|consen 369 IIPSGACGALVHGLE-------DEFYEVRRAAVASLC-SLATSSP---G-FAVRALDFLVDMFNDEIEVVRLKAIFALTM 436 (823)
T ss_pred cccccccceeeeech-------HHHHHHHHHHHHHHH-HHHcCCC---C-cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 444556666666553 123578899999998 5654320 0 012379999999988888999999999998
Q ss_pred HhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh------HHHHHHHHHHHhCCHhhHHHhhc-
Q 046820 184 LVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS------SASALSVLDGICSTDCGRENAND- 256 (350)
Q Consensus 184 Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~------~e~aL~vL~~L~~~~eGr~ai~~- 256 (350)
++.. ..| + ..-++...+-|.|. + ..++.++.-|+..+.. +-..-.+|.+|...+.-|.+|..
T Consensus 437 Is~~-------l~i-~-eeql~~il~~L~D~-s-~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~c 505 (823)
T KOG2259|consen 437 ISVH-------LAI-R-EEQLRQILESLEDR-S-VDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRC 505 (823)
T ss_pred HHHH-------hee-c-HHHHHHHHHHHHhc-C-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHH
Confidence 8732 234 3 56667777777664 3 3455555555544321 11334456666666666655542
Q ss_pred -------CCCChHHHHHHHh
Q 046820 257 -------KPLTMPVVVKKIL 269 (350)
Q Consensus 257 -------~~~~v~~lv~~l~ 269 (350)
|..-+-.+++.+.
T Consensus 506 m~~iGqnH~~lv~s~m~rfl 525 (823)
T KOG2259|consen 506 MGRIGQNHRRLVLSNMGRFL 525 (823)
T ss_pred HHHHhccChhhHHHHHHHHH
Confidence 4444555555544
No 127
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=56.72 E-value=68 Score=25.82 Aligned_cols=70 Identities=19% Similarity=0.131 Sum_probs=49.2
Q ss_pred hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHH----HH-hcCchHHHHHHHHHHHHH
Q 046820 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVL----LQ-VGCAERTKEKASEVLKLM 333 (350)
Q Consensus 261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~l----lq-~~~t~~ak~kA~~LLk~l 333 (350)
+..|-++|...++...-.|..+|-.++++++ +.+..++.+......++.. .+ .+-+...|+|+.+|++..
T Consensus 39 ~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g---~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 39 VDAIKKRINNKNPHVVLKALTLLEYCVKNCG---ERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc---HHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 5666777777778888999999999999986 4677777766655555432 11 112578999988887654
No 128
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=56.29 E-value=55 Score=31.00 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHH
Q 046820 132 LEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNS-GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKL 210 (350)
Q Consensus 132 ~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~l 210 (350)
...|+.+|-..+=+.+..|........++.++.+|.. ........+..+|..+.-+. +.+.... +..+.+..++.+
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~--p~N~r~F-E~~~Gl~~v~~l 184 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDS--PENQRDF-EELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcC--hHHHHHH-HHhCCHHHHHHH
Confidence 4556666665444677888888888999999999954 46777777777777776554 4666666 447888999999
Q ss_pred hcCCCChHH
Q 046820 211 IEEPISPTA 219 (350)
Q Consensus 211 L~~~~~~~a 219 (350)
+++...++.
T Consensus 185 lk~~~~~~~ 193 (257)
T PF08045_consen 185 LKSKSTDRE 193 (257)
T ss_pred HccccccHH
Confidence 998744433
No 129
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=53.87 E-value=3.5e+02 Score=30.00 Aligned_cols=77 Identities=9% Similarity=0.172 Sum_probs=46.0
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHh-ccccccccchHHHHHHHHHHH
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFES-FSKTCLDENVSVLEEILSTLI 140 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~-~~~~~~~~~~~~~e~Al~~L~ 140 (350)
+..++..|.+.............+-+|-..+-.-..||+.|.+.|+++.|++.|.. |..+......++.|..+.++-
T Consensus 119 L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 119 LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence 44455555443221122445566666666555558999999999999999999852 333200112455666665554
No 130
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.84 E-value=4.4 Score=37.87 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.2
Q ss_pred cccccccCCcccCCCCCCcccCCccc
Q 046820 25 GASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 25 ~~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
+.+|--+|||+.. +|.-|||+.|-
T Consensus 48 LtLqPc~dPvit~--~GylfdrEaIL 71 (303)
T KOG3039|consen 48 LTLQPCRDPVITP--DGYLFDREAIL 71 (303)
T ss_pred eecccccCCccCC--CCeeeeHHHHH
Confidence 4678899999999 99999998864
No 131
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=52.60 E-value=87 Score=26.19 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=49.2
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh-----cC---chHHHHHHHHHHHHH
Q 046820 262 PVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV-----GC---AERTKEKASEVLKLM 333 (350)
Q Consensus 262 ~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~-----~~---t~~ak~kA~~LLk~l 333 (350)
..|.++|...++..|-.|..+|-.+|.++. +.++.++.+.-.+=+-+...+- .| +...|.+|.+++.++
T Consensus 41 d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~---~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 41 EYLLKRLKRSSPHVKLKVLKIIKHLCEKGN---SDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhhCC---HHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 455666666677788899999999999874 5677777744333333333321 11 357899999999998
Q ss_pred Hh
Q 046820 334 NL 335 (350)
Q Consensus 334 ~~ 335 (350)
-.
T Consensus 118 f~ 119 (122)
T cd03572 118 FS 119 (122)
T ss_pred hc
Confidence 65
No 132
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.84 E-value=2.9e+02 Score=28.49 Aligned_cols=124 Identities=10% Similarity=0.113 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhcccccc--ccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHH
Q 046820 83 CKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCL--DENVSVLEEILSTLILLFPLEGEALTHLGSASSMG 160 (350)
Q Consensus 83 ~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~--~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~ 160 (350)
+.-|..-|.-+-..+.+||.++.....|..|++-+..|...++ ....+..|+-...|.. +-...+||........++
T Consensus 243 k~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs-~lm~~~nr~~Fl~~EGlq 321 (536)
T KOG2734|consen 243 KQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCS-LLMAPANRERFLKGEGLQ 321 (536)
T ss_pred HHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHH-HhcChhhhhhhhccccHH
Confidence 3446666677778888899999999889999998876632211 1123556777777763 333458888888878888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhch---hhHHHHHH
Q 046820 161 CMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSEN---EGAIEALF 208 (350)
Q Consensus 161 ~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~---~g~i~~LV 208 (350)
.+.-+++. .-.+|..|..+|-......+.-++|...++. .-+++...
T Consensus 322 Lm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 322 LMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 88888887 5567889999999987654322444443332 34555555
No 133
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=51.30 E-value=1.3e+02 Score=25.66 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=55.0
Q ss_pred ChHHHHHHHhcc-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHH-HHHHHHhc--CchHHHHHHHHHHHHHHh
Q 046820 260 TMPVVVKKILRV-SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQK-LLVLLQVG--CAERTKEKASEVLKLMNL 335 (350)
Q Consensus 260 ~v~~lv~~l~~~-S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~-LL~llq~~--~t~~ak~kA~~LLk~l~~ 335 (350)
++.+|-++|... ++...-.|..+|=.+.+++| .....++.+...+.- |..++... .....|.|..++++-...
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG---~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCG---HRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 356667777543 56677789999988888887 357777777777776 67666522 234789997777776666
Q ss_pred ccCCCCC
Q 046820 336 HRDRLEC 342 (350)
Q Consensus 336 ~~~~~~c 342 (350)
.-+++|-
T Consensus 116 ~f~~~~~ 122 (141)
T cd03565 116 AFRGSPD 122 (141)
T ss_pred HhCCCcc
Confidence 5555554
No 134
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=49.68 E-value=1.5e+02 Score=28.28 Aligned_cols=59 Identities=25% Similarity=0.303 Sum_probs=44.4
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHT 230 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L 230 (350)
..++.+...|.+.+...|..|+..|..+ |. ..+++.|..++.+. ++.....|..+|.++
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------------~~-~~av~~l~~~l~d~-~~~vr~~a~~aLg~~ 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-------------GS-EEAVPLLRELLSDE-DPRVRDAAADALGEL 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-------------ch-HHHHHHHHHHhcCC-CHHHHHHHHHHHHcc
Confidence 5789999999988888888888774432 23 67889999999877 556666666666665
No 135
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=49.43 E-value=1.3e+02 Score=26.39 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhh-HhhcccCCcHHHHHH
Q 046820 86 LVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEA-LTHLGSASSMGCMIW 164 (350)
Q Consensus 86 Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~-k~~i~~~~~l~~Lv~ 164 (350)
+|.....|-..+ ..-.-..+.-+|.-++.++. .+. .+..++..++++|- ++-++... -..+...=.++.|+.
T Consensus 37 ~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn-~~~----~d~~i~q~sLaILE-s~Vl~S~~ly~~V~~evt~~~Li~ 109 (160)
T PF11841_consen 37 ALTAFVELMEHG-IVSWDTLSDSFIKKIASYVN-SSA----MDASILQRSLAILE-SIVLNSPKLYQLVEQEVTLESLIR 109 (160)
T ss_pred HHHHHHHHHhcC-cCchhhccHHHHHHHHHHHc-ccc----ccchHHHHHHHHHH-HHHhCCHHHHHHHhccCCHHHHHH
Confidence 555555555443 22223445567788888875 111 24678899999998 45444433 345555668999999
Q ss_pred HHccCCHHHHHHHHHHHHHHhcCCC
Q 046820 165 FLNSGDLSRRRNAVLLLTELVSSDS 189 (350)
Q Consensus 165 ~L~~gs~~~r~~Aa~lL~~Ls~~~~ 189 (350)
.|+.++.+-..||.+++-.|....+
T Consensus 110 hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999976554
No 136
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=48.54 E-value=1.3e+02 Score=31.95 Aligned_cols=116 Identities=10% Similarity=0.083 Sum_probs=75.7
Q ss_pred CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhH-hhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhc
Q 046820 108 AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEAL-THLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVS 186 (350)
Q Consensus 108 Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k-~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~ 186 (350)
.++|.|+++|..-+++..+.+-.+--.|-+.|- ++. +++ ..|+++ .+..+-.-+++.+...|+.|+.++-+...
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLq-lfa---q~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~ 395 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQ-LFA---QLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMH 395 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHH-HHH---HHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhc
Confidence 578999999963221100112223344555555 332 333 455555 67777777888899999999999888874
Q ss_pred CCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820 187 SDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232 (350)
Q Consensus 187 ~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~ 232 (350)
. .|......+ ++.++|.+..+..|+ .-..+.-+..+++.++.
T Consensus 396 g-p~~~~lT~~--V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad 437 (858)
T COG5215 396 G-PCEDCLTKI--VPQALPGIENEMSDS-CLWVKSTTAWCFGAIAD 437 (858)
T ss_pred C-ccHHHHHhh--HHhhhHHHHHhcccc-eeehhhHHHHHHHHHHH
Confidence 4 334555555 589999999998865 55677777888888864
No 137
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=46.73 E-value=1.6e+02 Score=31.02 Aligned_cols=77 Identities=22% Similarity=0.198 Sum_probs=45.8
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH----HHHHHHHHH
Q 046820 168 SGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS----ASALSVLDG 243 (350)
Q Consensus 168 ~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~----e~aL~vL~~ 243 (350)
.|+.++|.-|+..|-.....= ..+ . ..+|.++++|..|. +..-.+.|++.|-.+|..+ .+..-+|.+
T Consensus 33 kg~~k~K~Laaq~I~kffk~F------P~l-~-~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~~~v~kvaDvL~Q 103 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHF------PDL-Q-EEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQ 103 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-------GGG-H-HHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T--T-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhC------hhh-H-HHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHH
Confidence 467778888888777776431 123 2 57778888888766 5667777788888887542 466667777
Q ss_pred HhCCHhhHHH
Q 046820 244 ICSTDCGREN 253 (350)
Q Consensus 244 L~~~~eGr~a 253 (350)
|...++..+-
T Consensus 104 lL~tdd~~E~ 113 (556)
T PF05918_consen 104 LLQTDDPVEL 113 (556)
T ss_dssp HTT---HHHH
T ss_pred HHhcccHHHH
Confidence 7666654443
No 138
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=46.63 E-value=2.8e+02 Score=26.79 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=79.3
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcC-CCchhHHhhhhchhhHHHHHHHHhcCCC-ChHHHHHHHHHHHHhhh---
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSS-DSDQRKVNVLSENEGAIEALFKLIEEPI-SPTATKAALVVIYHTIA--- 232 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~-~~~~~~~~~Ig~~~g~i~~LV~lL~~~~-~~~a~k~Al~aL~~L~~--- 232 (350)
.++.+.+.++.|+.+.+.-|+.++-=|+-. +...+..+.. ..+.|.|.+++.++. ++.+.-.++.+|--++-
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~---~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~ 163 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF---EELKPVLKRILTDSSASPKARAACLEALAICTFVGG 163 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH---HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhc
Confidence 467788889999777777776665544321 1001233333 578889999998873 23332333333333321
Q ss_pred h----HHHHHHHHHHH--hCCH--hhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhh
Q 046820 233 S----SASALSVLDGI--CSTD--CGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQV 304 (350)
Q Consensus 233 ~----~e~aL~vL~~L--~~~~--eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~ 304 (350)
. .+..+..|+.+ ..+. .|.......+. .+.++- +-=.|-+.|+..+.. ...... -.
T Consensus 164 ~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~-~~~l~~--------aAL~aW~lLlt~~~~------~~~~~~-~~ 227 (309)
T PF05004_consen 164 SDEEETEELMESLESIFLLSILKSDGNAPVVAAED-DAALVA--------AALSAWALLLTTLPD------SKLEDL-LE 227 (309)
T ss_pred CChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCC-ccHHHH--------HHHHHHHHHHhcCCH------HHHHHH-HH
Confidence 1 12233444422 1111 12111111110 111111 112344555555542 122222 23
Q ss_pred chHHHHHHHHHhcCchHHHHHHHHHHHHHHhccC
Q 046820 305 GAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRD 338 (350)
Q Consensus 305 G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~ 338 (350)
..+++|..+|+++ ....|--|.+-|-++-...+
T Consensus 228 ~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 228 EALPALSELLDSD-DVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhh
Confidence 4577788888765 56788888888887766443
No 139
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=46.38 E-value=1.9e+02 Score=31.71 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=72.7
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA 237 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a 237 (350)
+++.+.+=|.+.+...|..|.+++..|- ..+.+ .-+++++.+.+.++ ++.-.|.|.-+++.+-..+
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~-------~~el~---~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld--- 158 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLR-------VKELL---GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD--- 158 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcC-------hHHHH---HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC---
Confidence 6777888888889999999988887763 23344 46788999999877 7788888888888774211
Q ss_pred HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccc
Q 046820 238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMN 289 (350)
Q Consensus 238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~ 289 (350)
..+..+.|.+-.+..++...+|.+.-+|+..|..++..
T Consensus 159 --------------~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 159 --------------KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred --------------HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 11222333445555555566788888888888877763
No 140
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.83 E-value=5.2e+02 Score=29.72 Aligned_cols=179 Identities=9% Similarity=0.045 Sum_probs=90.8
Q ss_pred HHHHHHHHhcCccccchh--h-ccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHH
Q 046820 87 VAKIKEWAKESESNKSCI--V-DNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMI 163 (350)
Q Consensus 87 l~~L~~Lak~s~~nR~~i--~-~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv 163 (350)
++.|..|++==+-.+..+ + ..|+.|..+++|++ +. .++.---+-+-...|++|+..+.-+.....-...+
T Consensus 488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS--~a-----~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~ 560 (1387)
T KOG1517|consen 488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS--SA-----RELRPILVFIWAKILAVDPSCQADLVKENGYKYFL 560 (1387)
T ss_pred HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc--ch-----HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEE
Confidence 444455554334444443 2 34999999999972 21 33333333333335677875554333222222233
Q ss_pred HHHcc-C--CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHH
Q 046820 164 WFLNS-G--DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSV 240 (350)
Q Consensus 164 ~~L~~-g--s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~v 240 (350)
.+|.. + +.|.|.-||.+|-.+...-. -..+..+ + .+.|..-+..|.++..+-...-..-+|-.|....
T Consensus 561 ~vL~~~~~~~~EqrtmaAFVLAviv~nf~-lGQ~acl-~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~------ 631 (1387)
T KOG1517|consen 561 QVLDPSQAIPPEQRTMAAFVLAVIVRNFK-LGQKACL-N-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY------ 631 (1387)
T ss_pred EEecCcCCCCHHHHHHHHHHHHHHHcccc-hhHHHhc-c-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc------
Confidence 34443 3 46889999999988874321 1122233 3 5677777777876534444444444444443322
Q ss_pred HHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccc
Q 046820 241 LDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMN 289 (350)
Q Consensus 241 L~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~ 289 (350)
++.|=. ....++...|...+....+..+-.||.+|-.+-.+
T Consensus 632 -------~~Arw~-G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 632 -------DEARWS-GRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred -------chhhhc-cccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 111111 01233344444444444555566666666665554
No 141
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=45.51 E-value=1.1e+02 Score=26.76 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=49.8
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~ 232 (350)
..++.+...|+..++..|.+|..+|..|...+ ..| + + ..++..++..+.|. ++.-...|...+..+..
T Consensus 25 ~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~ik--~-k-~~l~~~~l~~l~D~-~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 25 PYLPNLYKCLRDEDPLVRKTALLVLSHLILED---MIK--V-K-GQLFSRILKLLVDE-NPEIRSLARSFFSELLK 92 (178)
T ss_pred hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---cee--e-h-hhhhHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 36888899999999999999999999997552 222 2 1 23447888888776 66666777777777653
No 142
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.36 E-value=1.7e+02 Score=31.84 Aligned_cols=68 Identities=21% Similarity=0.336 Sum_probs=54.1
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~ 232 (350)
..++|...|+.+.+..|.-|+..+-++-..+ .... ...|+++.|-+++.|. +|..+-+|+.+|..+..
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~-----~~~~-~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDID-----PDLV-EDSGLVDALKDLLSDS-NPMVVANALAALSEIHE 189 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcCC-----hhhc-cccchhHHHHHHhcCC-CchHHHHHHHHHHHHHH
Confidence 5788888899999999998888888776432 2222 4589999999999965 78899999999998853
No 143
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=43.77 E-value=1.5e+02 Score=27.96 Aligned_cols=146 Identities=10% Similarity=0.068 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhcccCCcHHH
Q 046820 83 CKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGSASSMGC 161 (350)
Q Consensus 83 ~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~~l~~ 161 (350)
.+.|+.-|.-++++ ++.|..+.++-+.-.|-.+|.-.+.+ ......+-.++.++-.++..++ +..+-+...+.++.
T Consensus 117 vcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~--~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 117 VCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSN--SKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred HHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccC--CccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 35677666666665 78888888888766777777522111 0112233445555543334343 33344456789999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHhcCCCc-hhHHhhh---hchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q 046820 162 MIWFLNSGDLSRRRNAVLLLTELVSSDSD-QRKVNVL---SENEGAIEALFKLIEEPISPTATKAALVVIYHTI 231 (350)
Q Consensus 162 Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~-~~~~~~I---g~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~ 231 (350)
..+++..|+.-+|.-|+.++..+..+++. +-.|... -...-++..+|.-+-+-.+.+..|-++++-..||
T Consensus 194 cLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs 267 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS 267 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Confidence 99999999999999888888777655321 1112222 1122333444432323335567776666666665
No 144
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=41.60 E-value=2.4e+02 Score=24.57 Aligned_cols=109 Identities=14% Similarity=0.162 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcc-cCCcH
Q 046820 81 VGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLG-SASSM 159 (350)
Q Consensus 81 ~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~-~~~~l 159 (350)
.-+..++..+-.|+...+. +++. .+|.+...|. + .++.++..|+.+|.. |-..+ .+. .+..+
T Consensus 3 ~vR~n~i~~l~DL~~r~~~----~ve~-~~~~l~~~L~---D----~~~~VR~~al~~Ls~-Li~~d----~ik~k~~l~ 65 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPN----LVEP-YLPNLYKCLR---D----EDPLVRKTALLVLSH-LILED----MIKVKGQLF 65 (178)
T ss_pred HHHHHHHHHHHHHHHhCcH----HHHh-HHHHHHHHHC---C----CCHHHHHHHHHHHHH-HHHcC----ceeehhhhh
Confidence 4455677777777766532 3322 4677777775 3 358899999999984 42222 222 22344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcC
Q 046820 160 GCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEE 213 (350)
Q Consensus 160 ~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~ 213 (350)
..++..|...+.+.|..|...+.+++... ....+ ...++.++.-+.+
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~----~~~~i---~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKKR----NPNII---YNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhc----cchHH---HHHHHHHHHHHhC
Confidence 78888887779999999999999998541 12233 3555566655554
No 145
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=41.27 E-value=1.4e+02 Score=32.71 Aligned_cols=114 Identities=15% Similarity=0.213 Sum_probs=65.0
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC-chhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHH
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDS-DQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS 236 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~-~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~ 236 (350)
.+..+.|.|++.+...|++|+.++-+|+..-. |.+. ..+|. -|.| |..-|... +|.-.-.-+.+|+.++..
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee-~~m~~-lGvv--LyEylgee-ypEvLgsILgAikaI~nv--- 871 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEE-KLMGH-LGVV--LYEYLGEE-YPEVLGSILGAIKAIVNV--- 871 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHH-HHHHH-hhHH--HHHhcCcc-cHHHHHHHHHHHHHHHHh---
Confidence 56678899999999999999999999974321 0111 13322 3433 34444433 443333333333333210
Q ss_pred HHHHHHHHhCCHhhHHHhh-cCCCChHHHHHHHhccChhHHHHHHHHHHHHccccc
Q 046820 237 ALSVLDGICSTDCGRENAN-DKPLTMPVVVKKILRVSELATELSVSILWKLCMNEK 291 (350)
Q Consensus 237 aL~vL~~L~~~~eGr~ai~-~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~ 291 (350)
-|-..+. -..+.+|.|.-+|.+--..-+|+++..+..+|..++
T Consensus 872 ------------igm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp 915 (1172)
T KOG0213|consen 872 ------------IGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP 915 (1172)
T ss_pred ------------ccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc
Confidence 0111111 012445666665655566788999999999998775
No 146
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=40.29 E-value=4.2e+02 Score=27.03 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=59.0
Q ss_pred HHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHH
Q 046820 133 EEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNS--GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKL 210 (350)
Q Consensus 133 e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~--gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~l 210 (350)
--++.+|..+|- -++.+-.+...+.+..++.+|-+ ++.+-..+....+--|+-. +...+.+ ...+.|+.|+++
T Consensus 175 ~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn---~~~ae~~-~~~~li~~L~~I 249 (442)
T KOG2759|consen 175 QFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN---PHAAEKL-KRFDLIQDLSDI 249 (442)
T ss_pred HHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC---HHHHHHH-hhccHHHHHHHH
Confidence 345555653333 34667777777788888888843 3677777777777666633 3455666 557888888888
Q ss_pred hcCCCChHHHHHHHHHHHHhh
Q 046820 211 IEEPISPTATKAALVVIYHTI 231 (350)
Q Consensus 211 L~~~~~~~a~k~Al~aL~~L~ 231 (350)
+++..-..-.+-.+.++.|++
T Consensus 250 vk~~~KEKV~Rivlai~~Nll 270 (442)
T KOG2759|consen 250 VKESTKEKVTRIVLAIFRNLL 270 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 876433344455555555554
No 147
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=39.29 E-value=87 Score=29.64 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=42.1
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP 214 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~ 214 (350)
..+..+..+|.+|..--|.....+|+.|....| .....| +++|.+|+++|+.+
T Consensus 188 ~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d---~~~~~~--~dlispllrlL~t~ 240 (262)
T PF14225_consen 188 QILTFLLGLLENGPPWLRRKTLQILKVLLPHVD---MRSPHG--ADLISPLLRLLQTD 240 (262)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc---CCCCcc--hHHHHHHHHHhCCc
Confidence 467788999999999999999999999986543 222353 57999999999865
No 148
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=37.92 E-value=3.8e+02 Score=25.85 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=34.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhh-hchhhHHHHHHHHhcCCC
Q 046820 159 MGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVL-SENEGAIEALFKLIEEPI 215 (350)
Q Consensus 159 l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~I-g~~~g~i~~LV~lL~~~~ 215 (350)
|.-.+.-|...+.+.|+.|...|..+..... ....+ .....++..+.+.++.+.
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~---~~d~v~~~~~tL~~~~~k~lkkg~ 99 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY---LPDFVEDRRETLLDALLKSLKKGK 99 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHhccCC
Confidence 4344444555678899999999988875432 11222 233567888888888774
No 149
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.54 E-value=68 Score=33.07 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=54.2
Q ss_pred ChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhc-CchHHHHHHHHHHHHHHhccC
Q 046820 260 TMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVG-CAERTKEKASEVLKLMNLHRD 338 (350)
Q Consensus 260 ~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~-~t~~ak~kA~~LLk~l~~~~~ 338 (350)
+|-+|.++|...++..+-.|..+|=.+.+++| ...-.++.+.+++..++...--. .....|+| +|.++.. |.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG---~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~k---iL~LI~~-W~ 111 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCG---YSFHLQVASKEFLNEMVKRPKNKPRDLKVREK---ILELIDT-WQ 111 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHhccccCCcchhHHHH---HHHHHHH-HH
Confidence 45667777766667888899997777777776 35666777888888866555444 35678888 5555554 77
Q ss_pred CCCCC
Q 046820 339 RLECV 343 (350)
Q Consensus 339 ~~~c~ 343 (350)
..-|-
T Consensus 112 ~af~~ 116 (470)
T KOG1087|consen 112 QAFCG 116 (470)
T ss_pred HHccC
Confidence 67776
No 150
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=36.86 E-value=2.4e+02 Score=27.36 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC--CChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCH
Q 046820 171 LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP--ISPTATKAALVVIYHTIASSASALSVLDGICSTD 248 (350)
Q Consensus 171 ~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~--~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~ 248 (350)
...|..|...|........ ..-..+-..++++..|+++++-+ .+....-+|+.+|-.++...-..-.++..|...
T Consensus 236 l~iRllAi~~l~~~~~~~~--~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~- 312 (329)
T PF06012_consen 236 LQIRLLAIANLVYIHPESQ--FSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGAN- 312 (329)
T ss_pred HHHHHHHHHHHHhhCCCHH--HHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCC-
Confidence 4566777777776654321 22222323367999999999854 344556666777777765443444455555442
Q ss_pred hhHHHhhcCCCChHHHHHHH
Q 046820 249 CGRENANDKPLTMPVVVKKI 268 (350)
Q Consensus 249 eGr~ai~~~~~~v~~lv~~l 268 (350)
..-|.++.+++.+
T Consensus 313 -------v~HGiL~~llR~~ 325 (329)
T PF06012_consen 313 -------VSHGILPQLLRKC 325 (329)
T ss_pred -------CCcccHHHHHHHH
Confidence 2456677777654
No 151
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=35.88 E-value=1.2e+02 Score=31.98 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=74.2
Q ss_pred HHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcC
Q 046820 178 VLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDK 257 (350)
Q Consensus 178 a~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~ 257 (350)
+..|.++|.+. ...+..+.. ..+.+.|+++|.++ +-.-.--+...++|+... ...=++-+ -.
T Consensus 410 ~l~LkS~SrSV--~~LRTgL~d-~~I~elLi~~Ls~P-eimi~~~~t~~icn~vv~-------------fsnL~~~f-L~ 471 (743)
T COG5369 410 VLFLKSMSRSV--TFLRTGLLD-YPIVELLIDALSNP-EIMIEFPDTIDICNKVVP-------------FSNLGAGF-LE 471 (743)
T ss_pred HHHHHHhhHHH--HHHHhhccc-cchHHHHHHHhcCc-cceeeccchhhhhheeee-------------ccchHHHH-HH
Confidence 33444554332 245555644 78999999999875 222222344555555321 11122333 35
Q ss_pred CCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 258 PLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 258 ~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
.+.|..+++++..-.+.-+.+.+-+|..|--++. ..+..+-..+-| +.+++....-.| -..++. .|++|+.
T Consensus 472 ~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq--~~ekf~~Lakig-~~kvl~~~NDpc-~~vq~q---~lQilrN 542 (743)
T COG5369 472 KSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ--KNEKFKFLAKIG-VEKVLSYTNDPC-FKVQHQ---VLQILRN 542 (743)
T ss_pred hhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc--chhhhhhHHhcC-HHHHHHHhcCcc-cccHHH---HHHHHHh
Confidence 6778888888875555556666777777665542 234444444544 777776554444 345555 5566655
No 152
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.64 E-value=6.3e+02 Score=27.76 Aligned_cols=220 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
+...+..++....+.++-..+=||.-+.+.... +++..+..- || .+|.+.+.. +-.-+..|+..|. ++
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~~D--I~---KlLvS~~~~----~~vkqkaALclL~-L~ 176 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFADD--IP---KLLVSGSSM----DYVKQKAALCLLR-LF 176 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhhhh--hH---HHHhCCcch----HHHHHHHHHHHHH-HH
Q ss_pred CCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC---------
Q 046820 144 PLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP--------- 214 (350)
Q Consensus 144 s~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~--------- 214 (350)
. .+-..+.-.+-.+.++++|...++..-..|..++..|+...+ +.+|-.++-.-+-+.-+|.....+
T Consensus 177 r---~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p-~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~v 252 (938)
T KOG1077|consen 177 R---KSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP-ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFV 252 (938)
T ss_pred h---cCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC-HHHhhhHHHHHHHHHHHHhhcccchhhceeecC
Q ss_pred CChHHHHHHHHHHHHhhhhHH-----------------------------------------------------------
Q 046820 215 ISPTATKAALVVIYHTIASSA----------------------------------------------------------- 235 (350)
Q Consensus 215 ~~~~a~k~Al~aL~~L~~~~e----------------------------------------------------------- 235 (350)
+.|=..-..++.|.+.....+
T Consensus 253 P~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~ 332 (938)
T KOG1077|consen 253 PAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVN 332 (938)
T ss_pred CChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q ss_pred ---------------HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHH
Q 046820 236 ---------------SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVE 300 (350)
Q Consensus 236 ---------------~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~ 300 (350)
.+|.-+..||++...-.++-.|-..|-..++.=..+|-+ ..||..|+.+|..+-- ...+.+
T Consensus 333 ~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSir--rravDLLY~mcD~~Na--k~IV~e 408 (938)
T KOG1077|consen 333 QLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIR--RRAVDLLYAMCDVSNA--KQIVAE 408 (938)
T ss_pred HHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHH--HHHHHHHHHHhchhhH--HHHHHH
Q ss_pred HHh
Q 046820 301 ALQ 303 (350)
Q Consensus 301 ~~~ 303 (350)
+++
T Consensus 409 lLq 411 (938)
T KOG1077|consen 409 LLQ 411 (938)
T ss_pred HHH
No 153
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=35.50 E-value=1.9e+02 Score=29.18 Aligned_cols=80 Identities=13% Similarity=0.073 Sum_probs=58.0
Q ss_pred ChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCC
Q 046820 260 TMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDR 339 (350)
Q Consensus 260 ~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~ 339 (350)
|+..+.++|..-.+...-.|++.|-++..+++ ...+.|+-+......|..++.+..-++.++|-+.+++-..+..+.
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg---~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCG---KRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc---hHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 45666666665666667789999999888886 357777777776676766666444689999988888877776666
Q ss_pred CCC
Q 046820 340 LEC 342 (350)
Q Consensus 340 ~~c 342 (350)
+|-
T Consensus 123 Dp~ 125 (462)
T KOG2199|consen 123 DPS 125 (462)
T ss_pred Ccc
Confidence 654
No 154
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=32.81 E-value=16 Score=23.71 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=15.0
Q ss_pred cccccCC-cccCCCCCCcccCCcc
Q 046820 27 SLIEKDP-VTTTPRNGITYDRVNI 49 (350)
Q Consensus 27 ~eiM~DP-Vtl~~~TG~TYDR~sI 49 (350)
.+.|+|| |.+. -|++|=++-|
T Consensus 5 ~~~~~~~~~~~~--CGH~fC~~C~ 26 (39)
T PF13923_consen 5 LDELRDPVVVTP--CGHSFCKECI 26 (39)
T ss_dssp TSB-SSEEEECT--TSEEEEHHHH
T ss_pred CCcccCcCEECC--CCCchhHHHH
Confidence 4789999 4677 8999966544
No 155
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.65 E-value=16 Score=29.97 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=17.0
Q ss_pred ccccCCcccCCCCCCcccCCccc
Q 046820 28 LIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 28 eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
++=|||++ ||-||.+|-|+..+
T Consensus 21 DLNrdPiV-sPytG~s~P~s~fe 42 (129)
T COG4530 21 DLNRDPIV-SPYTGKSYPRSYFE 42 (129)
T ss_pred ccCCCccc-cCcccccchHHHHH
Confidence 67899974 56799999886643
No 156
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=30.74 E-value=89 Score=26.06 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=32.8
Q ss_pred hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 046820 147 GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELV 185 (350)
Q Consensus 147 ~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls 185 (350)
++.|.++..-|+=..+..+|.+.+.+.|.+|..++..|.
T Consensus 76 p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 76 PNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 366777777888899999999999999999999998875
No 157
>PLN03205 ATR interacting protein; Provisional
Probab=30.67 E-value=3.5e+02 Score=27.66 Aligned_cols=129 Identities=13% Similarity=0.139 Sum_probs=74.4
Q ss_pred hHHHHHHHHhcCC-CChHHHHHHHHHHHHhhhhH-----HH----HHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc
Q 046820 202 GAIEALFKLIEEP-ISPTATKAALVVIYHTIASS-----AS----ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV 271 (350)
Q Consensus 202 g~i~~LV~lL~~~-~~~~a~k~Al~aL~~L~~~~-----e~----aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~ 271 (350)
..|..|-.++-.- ..---.+.=+.+|++||... .+ -..+|.+||..+ -|-+.. ...---.+.++|...
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~-~~~~~~-~~~NWvsLfElm~Qi 379 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDE-KRFEAS-WDANWHSLFELMNQI 379 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCc-cccccc-ccccHHHHHHHHHHH
Confidence 4455555444321 11123455577788887431 23 345566777742 333322 222345566666543
Q ss_pred ----Ch-hHHHHHHHHHHHHccccccchHH-HHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 272 ----SE-LATELSVSILWKLCMNEKREEKT-AFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 272 ----S~-~~~E~Av~iL~~Lc~~~~~~~~~-~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
+. ..+=.|++|+-.+...+- .. .++...+..+|.++-++|+..++.+.|+.|-.||=+|-.
T Consensus 380 Av~~TEE~VrLEAvSIMnVIlmssn---a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 380 ASIRTEEDVKLEALSIMNIIVMSTD---AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred HhccchhheeeehhhhhHHhhhccc---hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 22 234568888877766431 12 233333667899999999988889999999988876655
No 158
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=30.66 E-value=1.6e+02 Score=29.12 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhCCCChhhHhhc-ccCCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHH
Q 046820 131 VLEEILSTLILLFPLEGEALTHL-GSASSMGCMIWFLNS--GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEAL 207 (350)
Q Consensus 131 ~~e~Al~~L~~~Ls~~~e~k~~i-~~~~~l~~Lv~~L~~--gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~L 207 (350)
.+--|+..|. +|....|.|.++ ++..+-..++.+|++ |..+-..|...++--|+-. +.+.+.|-.....|.-|
T Consensus 165 Trlfav~cl~-~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~---~~~aqdi~K~~dli~dl 240 (432)
T COG5231 165 TRLFAVSCLS-NLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS---KECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHh-hhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHH
Confidence 3455677777 677677777655 566777889999987 5678888888888877644 35555665557889999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhh
Q 046820 208 FKLIEEPISPTATKAALVVIYHTI 231 (350)
Q Consensus 208 V~lL~~~~~~~a~k~Al~aL~~L~ 231 (350)
+++++...-..-.+-...++.|+|
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~ 264 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVL 264 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999986422222333344444443
No 159
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.23 E-value=84 Score=32.42 Aligned_cols=70 Identities=14% Similarity=0.038 Sum_probs=51.7
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC-CChHHHHHHHHHHH
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP-ISPTATKAALVVIY 228 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~-~~~~a~k~Al~aL~ 228 (350)
+++..|.+-|.+.+......|..+|..+..... ..+...|++ .+++..+|.+.++. .+..-.+-.+..|.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG-~~fh~~Va~-k~fL~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCG-YSFHLQVAS-KEFLNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhh-HHHHHHHHH-HHHHHHHHhccccCCcchhHHHHHHHHHH
Confidence 577888888888877888999999999987753 455657866 89999999999976 44434444444443
No 160
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.01 E-value=8.1e+02 Score=27.28 Aligned_cols=149 Identities=12% Similarity=0.138 Sum_probs=79.2
Q ss_pred cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820 61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI 140 (350)
Q Consensus 61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~ 140 (350)
..++..+++.++.-..+.++...+.++.-...+|-.+ ....++.+|+.+|.+ + .+++.-.+..+.
T Consensus 282 d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-------~~~~i~kaLvrLLrs--~------~~vqyvvL~nIa 346 (968)
T KOG1060|consen 282 DPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-------QVTKIAKALVRLLRS--N------REVQYVVLQNIA 346 (968)
T ss_pred CccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-------HHHHHHHHHHHHHhc--C------CcchhhhHHHHH
Confidence 3577888888776655556555566665556665432 112457788888862 1 222332222221
Q ss_pred ---h--------------hCCCCh-hh---H----hhcccCCcHHHHHHHHccC--CHHHHHHHHHHHHHHhcCCCchhH
Q 046820 141 ---L--------------LFPLEG-EA---L----THLGSASSMGCMIWFLNSG--DLSRRRNAVLLLTELVSSDSDQRK 193 (350)
Q Consensus 141 ---~--------------~Ls~~~-e~---k----~~i~~~~~l~~Lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~ 193 (350)
. ..+.+. .. | ..+++.+-+..|.+=|+.= +.+ |.-|+.++..+. .+
T Consensus 347 ~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d-~~faa~aV~AiG------rC 419 (968)
T KOG1060|consen 347 TISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSD-RSFAAAAVKAIG------RC 419 (968)
T ss_pred HHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc-hhHHHHHHHHHH------HH
Confidence 0 011111 11 1 1223444555554444321 111 136788888886 23
Q ss_pred Hhhhhc-hhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820 194 VNVLSE-NEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232 (350)
Q Consensus 194 ~~~Ig~-~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~ 232 (350)
...+++ ..-++.+||.++++. +.--+-.|+.+|--|..
T Consensus 420 A~~~~sv~~tCL~gLv~Llssh-de~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 420 ASRIGSVTDTCLNGLVQLLSSH-DELVVAEAVVVIKRLLQ 458 (968)
T ss_pred HHhhCchhhHHHHHHHHHHhcc-cchhHHHHHHHHHHHHh
Confidence 333444 366999999999976 44455666677766653
No 161
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.60 E-value=1.7e+02 Score=31.83 Aligned_cols=116 Identities=21% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH-------
Q 046820 162 MIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS------- 234 (350)
Q Consensus 162 Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~------- 234 (350)
++-+|.+..+-.|..|+.+|+.+. -.|.+.+ ..+||-|+.=|.++ +|.-..+|+.+++.|+.-+
T Consensus 149 v~tLL~sskpYvRKkAIl~lykvF-----LkYPeAl---r~~FprL~EkLeDp-Dp~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 149 VFTLLNSSKPYVRKKAILLLYKVF-----LKYPEAL---RPCFPRLVEKLEDP-DPSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHH-----HhhhHhH---hhhHHHHHHhccCC-CchHHHHHHHHHHHHHhhCCcccccc
Q ss_pred --------------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHH
Q 046820 235 --------------------------------ASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSI 282 (350)
Q Consensus 235 --------------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~i 282 (350)
+..-++++-|+..=+.-.|+.--..||-.+|.. ..+.....|-++|
T Consensus 220 AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~--s~s~g~~d~~asi 297 (877)
T KOG1059|consen 220 APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAV--SMSSGMSDHSASI 297 (877)
T ss_pred cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheee--hhccCCCCcHHHH
Q ss_pred HHHHcc
Q 046820 283 LWKLCM 288 (350)
Q Consensus 283 L~~Lc~ 288 (350)
-+.+-+
T Consensus 298 qLCvqK 303 (877)
T KOG1059|consen 298 QLCVQK 303 (877)
T ss_pred HHHHHH
No 162
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=28.48 E-value=3.8e+02 Score=22.97 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCChhh-HhhcccCCcHHHHHHHHc--cCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHH
Q 046820 134 EILSTLILLFPLEGEA-LTHLGSASSMGCMIWFLN--SGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKL 210 (350)
Q Consensus 134 ~Al~~L~~~Ls~~~e~-k~~i~~~~~l~~Lv~~L~--~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~l 210 (350)
.++.+|..+++...+- -.++...|.++.+..... +.+......++.+|-.=+.+ +..+..| ....++-|-++
T Consensus 62 ~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I--~~~~~~~L~~~ 136 (157)
T PF11701_consen 62 IAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFI--SKNYVSWLKEL 136 (157)
T ss_dssp HHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCC--HHHCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHH--HHHHHHHHHHH
Q ss_pred hcCCCChH-HHHHHHHHHHHh
Q 046820 211 IEEPISPT-ATKAALVVIYHT 230 (350)
Q Consensus 211 L~~~~~~~-a~k~Al~aL~~L 230 (350)
++++.+.. -+--|+.+|.-|
T Consensus 137 ~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 137 YKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp TTTCC-HH-CHHHHHHHHHHC
T ss_pred HccccchHHHHHHHHHHHhcC
No 163
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.30 E-value=6.5e+02 Score=27.87 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=50.1
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA 237 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a 237 (350)
.++++-..|.+.+.-.|.||..+++++-... -..+ +++=+-+-.+|....+|..+++|...|+..- .|+|
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~~-----~~L~---pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D--~ErA 204 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNF-----EHLI---PDAPELIESFLLTEQDPSCKRNAFLMLFTTD--PERA 204 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhhh-----hhhc---CChHHHHHHHHHhccCchhHHHHHHHHHhcC--HHHH
Confidence 5677778888889999999999999987542 1133 3332333345544557889999999998873 3454
Q ss_pred HHHH
Q 046820 238 LSVL 241 (350)
Q Consensus 238 L~vL 241 (350)
|.-|
T Consensus 205 l~Yl 208 (948)
T KOG1058|consen 205 LNYL 208 (948)
T ss_pred HHHH
Confidence 4433
No 164
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.57 E-value=37 Score=27.80 Aligned_cols=19 Identities=26% Similarity=0.594 Sum_probs=16.5
Q ss_pred ccccCCcccCCCCCCcccCC
Q 046820 28 LIEKDPVTTTPRNGITYDRV 47 (350)
Q Consensus 28 eiM~DPVtl~~~TG~TYDR~ 47 (350)
++.|+|++ ||-||-+|+.+
T Consensus 21 DLnk~Piv-CP~CG~~~~~~ 39 (108)
T PF09538_consen 21 DLNKDPIV-CPKCGTEFPPE 39 (108)
T ss_pred cCCCCCcc-CCCCCCccCcc
Confidence 78899965 88899999987
No 165
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=27.38 E-value=81 Score=27.38 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHh
Q 046820 236 SALSVLDGICSTDCGRENANDKPLTMPVVVKKIL 269 (350)
Q Consensus 236 ~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~ 269 (350)
.+|.+|-.++..+-|...+..|+.+||-+|..|.
T Consensus 113 ~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~ 146 (149)
T PF12331_consen 113 EALRTLTSFAFSPFGALQLASHPTAIPRLVRALH 146 (149)
T ss_pred HHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHH
Confidence 7899999999999999999999999999998763
No 166
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=26.59 E-value=8.7e+02 Score=27.71 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=78.8
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC-CChHHHHHHHHHHHHhhhh---
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP-ISPTATKAALVVIYHTIAS--- 233 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~-~~~~a~k~Al~aL~~L~~~--- 233 (350)
.+..|-+-|+..++.+|..+-.+|.+|.-+-. ......+ ...+|+....|.|. .+...+++++..|+++...
T Consensus 436 iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp-~~l~~~~---~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p 511 (1233)
T KOG1824|consen 436 IVKAIQKQLREKSVKTRQGCFLLLTELINVLP-GALAQHI---PSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPP 511 (1233)
T ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHhCc-chhhhcc---cccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCCh
Confidence 34555555666788899999999999974432 1222223 55788888888876 3457889999999988321
Q ss_pred -------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHH--------hc-cC-hhHHHH
Q 046820 234 -------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKKI--------LR-VS-ELATEL 278 (350)
Q Consensus 234 -------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l--------~~-~S-~~~~E~ 278 (350)
...||.+...++..=.-...- ..-..++-|+.| .. .+ ...+|.
T Consensus 512 ~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~--~~~d~~~~v~~m~~~tl~rL~a~d~DqeVker 589 (1233)
T KOG1824|consen 512 EVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPP--SSFDASPYVKTMYDCTLQRLKATDSDQEVKER 589 (1233)
T ss_pred hhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCC--ccCCCChhHHHHHHHHHHHHhcccccHHHHHH
Confidence 037888888887641111110 001122223322 21 22 367999
Q ss_pred HHHHHHHHcccccc
Q 046820 279 SVSILWKLCMNEKR 292 (350)
Q Consensus 279 Av~iL~~Lc~~~~~ 292 (350)
|++....+-...+|
T Consensus 590 aIscmgq~i~~fgD 603 (1233)
T KOG1824|consen 590 AISCMGQIIANFGD 603 (1233)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999887665554
No 167
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=25.41 E-value=1.2e+02 Score=21.90 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=22.5
Q ss_pred HHHHhCCHhhHHHhhcCCCChHHHHHHHhcc
Q 046820 241 LDGICSTDCGRENANDKPLTMPVVVKKILRV 271 (350)
Q Consensus 241 L~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~ 271 (350)
|-.||++..||..+. ..++.++++.+...
T Consensus 2 LllL~~T~~GR~~lR--~~~vY~IlRe~h~~ 30 (58)
T PF04064_consen 2 LLLLCATREGREYLR--EKGVYPILRELHKW 30 (58)
T ss_pred HhHHhccHHHHHHHH--HcCchHHHHHHHhc
Confidence 567899999999994 45678888877654
No 168
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=25.28 E-value=3.4e+02 Score=21.30 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=45.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820 159 MGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232 (350)
Q Consensus 159 l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~ 232 (350)
++....-|....+..|.++...|..|.... . ..+...+.++..+...|+++ ++----+|.+.|..|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~---~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESK---S--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcC---C--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHH
Confidence 445555666667788999999999998653 2 12224578888888888877 44455556666666654
No 169
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=25.11 E-value=4.2e+02 Score=22.39 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=42.1
Q ss_pred CcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHH-HHHHhcCC
Q 046820 157 SSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEA-LFKLIEEP 214 (350)
Q Consensus 157 ~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~-LV~lL~~~ 214 (350)
.++.+|-+=|.++ +...-..|..+|..+..... ..+...|++ .+++.. |++++...
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG-~~fh~eias-k~Fl~e~L~~~i~~~ 95 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCG-HRFHVLVAK-KDFIKDVLVKLINPK 95 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcc-HHHHHHHHH-HHhhhHHHHHHHccc
Confidence 3666666666654 67777789999999987754 567777866 799998 99999743
No 170
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=24.86 E-value=9.1e+02 Score=26.16 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=78.5
Q ss_pred hhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh--------------------------HHHHHHHHHHHhCC-HhhHHH
Q 046820 201 EGAIEALFKLIEEPISPTATKAALVVIYHTIAS--------------------------SASALSVLDGICST-DCGREN 253 (350)
Q Consensus 201 ~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~--------------------------~e~aL~vL~~L~~~-~eGr~a 253 (350)
+.+...+...+..+ ++...+..+.++.+++.- .+..-.+|+.++.. ++.-..
T Consensus 440 ~~lW~~l~~~~~~~-~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~ 518 (727)
T PF12726_consen 440 PNLWKALLKSLDSD-NPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKE 518 (727)
T ss_pred HHHHHHHHHhhcCC-ChHHHHHHHHHHHHhccccccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45667777777644 567888888998888531 13677889999885 788888
Q ss_pred hhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhc
Q 046820 254 ANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVG 305 (350)
Q Consensus 254 i~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G 305 (350)
++.+..+..+++..++...+.-.+.|+.+|..+..-.+ ..++.+++++..
T Consensus 519 l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~--R~e~i~~ll~~~ 568 (727)
T PF12726_consen 519 LLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG--RLEAIQALLQSN 568 (727)
T ss_pred HHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHh
Confidence 99999999999999999999999999999999987443 245666666543
No 171
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=24.03 E-value=3.8e+02 Score=21.54 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=44.7
Q ss_pred cHHHHHHHHc-cCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHH-HHHHHHHHHhhhh
Q 046820 158 SMGCMIWFLN-SGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTAT-KAALVVIYHTIAS 233 (350)
Q Consensus 158 ~l~~Lv~~L~-~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~-k~Al~aL~~L~~~ 233 (350)
.++.+...|+ +...+.|..+-.++-.|++.. .+ + +.++..|++-+-....+... +.++.+|..++..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~-------~L-~-~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKV-------PL-S-DEVLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc-------CC-c-HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 4677888888 557899998888888887542 34 2 45666666544433233344 7888888888743
No 172
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=23.66 E-value=6.5e+02 Score=25.99 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCc--hhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 046820 156 ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSD--QRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS 233 (350)
Q Consensus 156 ~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~--~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~ 233 (350)
++.++.+++-+..... .-.+|+-++.+... ....+-+.+ .++|+.|+.+|....++....+|...|..+...
T Consensus 20 ~~~v~~llkHI~~~~I-----mDlLLklIs~d~~~~~~~ilewL~~-q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~i 93 (475)
T PF04499_consen 20 PNFVDNLLKHIDTPAI-----MDLLLKLISTDKPESPTGILEWLAE-QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRI 93 (475)
T ss_pred ccHHHHHHHhcCCcHH-----HHHHHHHHccCcccchHHHHHHHHH-hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhc-cChhHHHHHHHHHHHHcccc
Q 046820 234 SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILR-VSELATELSVSILWKLCMNE 290 (350)
Q Consensus 234 ~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~-~S~~~~E~Av~iL~~Lc~~~ 290 (350)
...+..-. .-+..+.--..-+..+.+|..+++.|+. ....+--++++|+..|.+..
T Consensus 94 s~n~~~~~-~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 94 SRNAPQNE-QSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred hhcccccc-ccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
No 173
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=7.6e+02 Score=24.70 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=93.7
Q ss_pred HHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHH
Q 046820 132 LEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNS-GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKL 210 (350)
Q Consensus 132 ~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~l 210 (350)
+-..+..+....|++.+...-....|.++.|..=|+. .+.-.+.+..-+.++|+..+ ..++-+.. .|+|..+-++
T Consensus 188 RvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaete---HgreflaQ-eglIdlicnI 263 (524)
T KOG4413|consen 188 RVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE---HGREFLAQ-EGLIDLICNI 263 (524)
T ss_pred HHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh---hhhhhcch-hhHHHHHHHH
Confidence 3445555554556776555555556888888877775 36667788888889998653 34455544 6777777776
Q ss_pred hcCC-CChHHHHHHHHH---------HHHhhh-------------------h-----HHHHHHHHHHHhCCHhhHHHhhc
Q 046820 211 IEEP-ISPTATKAALVV---------IYHTIA-------------------S-----SASALSVLDGICSTDCGRENAND 256 (350)
Q Consensus 211 L~~~-~~~~a~k~Al~a---------L~~L~~-------------------~-----~e~aL~vL~~L~~~~eGr~ai~~ 256 (350)
+..- .+|-.+--+++. ++.+++ . -+.|..+|..|.+.-+|..-+..
T Consensus 264 IsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllk 343 (524)
T KOG4413|consen 264 ISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLK 343 (524)
T ss_pred hhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhc
Confidence 6522 233222222221 111110 0 15899999999999999988864
Q ss_pred CCC-ChHHHHHHHhccC-hhHHHHHHHHHHHHcccc
Q 046820 257 KPL-TMPVVVKKILRVS-ELATELSVSILWKLCMNE 290 (350)
Q Consensus 257 ~~~-~v~~lv~~l~~~S-~~~~E~Av~iL~~Lc~~~ 290 (350)
..- +..-++-..+.-+ +.-+|.|+..|.++...-
T Consensus 344 TgppaaehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 344 TGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred cCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 332 3333444444333 455788888888887643
No 174
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=22.38 E-value=15 Score=24.82 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=13.2
Q ss_pred ccccccC----CcccCCCCCCcccCCccc
Q 046820 26 ASLIEKD----PVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 26 ~~eiM~D----PVtl~~~TG~TYDR~sIe 50 (350)
.+| |.+ ||.+. =|+||-+.+|+
T Consensus 4 c~e-~~~~~n~P~~L~--CGH~~c~~cl~ 29 (43)
T PF13445_consen 4 CKE-FSTEENPPMVLP--CGHVFCKDCLQ 29 (43)
T ss_dssp T-----TTSS-EEE-S--SS-EEEHHHHH
T ss_pred ccc-ccCCCCCCEEEe--CccHHHHHHHH
Confidence 356 777 99999 99999987764
No 175
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=21.59 E-value=3.5e+02 Score=30.01 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=49.9
Q ss_pred HhhcCCCChHHHHHHHhccCh--hHHHHHHHH--HHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCch----HHHH
Q 046820 253 NANDKPLTMPVVVKKILRVSE--LATELSVSI--LWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAE----RTKE 324 (350)
Q Consensus 253 ai~~~~~~v~~lv~~l~~~S~--~~~E~Av~i--L~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~----~ak~ 324 (350)
.++.+.||+..++.+|....+ ..++....+ |+..|.+- ...++.+++.|+++.||..+..-+.. -.-.
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv----~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~ 186 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV----KVNRRALLELNALNRLLSVLNRALQANQNSSQAE 186 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh----HHHHHHHHHcCCHHHHHHHHHHHHhCccccccch
Confidence 344678889888888865432 333333333 33345543 45788888999999999988532222 1245
Q ss_pred HHHHHHHHHHh
Q 046820 325 KASEVLKLMNL 335 (350)
Q Consensus 325 kA~~LLk~l~~ 335 (350)
-+.+||.++..
T Consensus 187 i~E~LL~IiE~ 197 (802)
T PF13764_consen 187 IAEQLLEIIES 197 (802)
T ss_pred HHHHHHHHHHH
Confidence 56678887766
No 176
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=21.19 E-value=7.3e+02 Score=23.72 Aligned_cols=245 Identities=15% Similarity=0.130 Sum_probs=130.0
Q ss_pred cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhh-ccCchHHHHHHHHh-c---ccccc-ccchHHHHH
Q 046820 61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIV-DNAAVSVLAAAFES-F---SKTCL-DENVSVLEE 134 (350)
Q Consensus 61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~-~aGai~~Lv~lL~~-~---~~~~~-~~~~~~~e~ 134 (350)
.+.+..++-.+.+. +.+..|+.+|-.--+..+.---.+= ..|.+.+|+.=.-+ + ++... .....-.=+
T Consensus 25 ~dk~~~~i~~l~~~------p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcn 98 (293)
T KOG3036|consen 25 NDKAYQLILSLVSP------PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCN 98 (293)
T ss_pred ccchhhHHHHhhCC------chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHH
Confidence 34566777777653 4455677666554443322222222 23666666553221 1 11100 011222356
Q ss_pred HHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccC----C-HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHH
Q 046820 135 ILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSG----D-LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFK 209 (350)
Q Consensus 135 Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~g----s-~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~ 209 (350)
|+++|. .+....|.|.....+..=-.+--+|..+ . .--|..+..++-.|...+|.+-++-.+ . .++||..++
T Consensus 99 aL~LlQ-cvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl-~-TeIVPlCLr 175 (293)
T KOG3036|consen 99 ALALLQ-CVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLL-T-TEIVPLCLR 175 (293)
T ss_pred HHHHHH-HHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHH-H-hhhHHHHHH
Confidence 777777 3444555555544433222333344333 2 346888999999999876533334344 4 799999999
Q ss_pred HhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCC---ChHHHHHHH----h-ccChhHHHHHHH
Q 046820 210 LIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPL---TMPVVVKKI----L-RVSELATELSVS 281 (350)
Q Consensus 210 lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~---~v~~lv~~l----~-~~S~~~~E~Av~ 281 (350)
+...| + ...|-...-+ |..+...+.|-.-|+.... +|..+.+.| . ..|.+.-.|++.
T Consensus 176 ime~G-S-elSKtvA~fI-------------lqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviR 240 (293)
T KOG3036|consen 176 IMESG-S-ELSKTVATFI-------------LQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIR 240 (293)
T ss_pred HHhcc-c-HHHHHHHHHH-------------HHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99877 3 3444333333 3333333344444332221 233333333 2 256788899999
Q ss_pred HHHHHccccccc--hHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820 282 ILWKLCMNEKRE--EKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMN 334 (350)
Q Consensus 282 iL~~Lc~~~~~~--~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~ 334 (350)
+...||.+.+-. -..+.-+-++-|.|..++ +.+ +.+|+--+.||+.+.
T Consensus 241 cYlrLsdnprar~aL~~clPd~Lrd~tfs~~l---~~D--~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 241 CYLRLSDNPRARAALRSCLPDQLRDGTFSLLL---KDD--PETKQWLQQLLKNLC 290 (293)
T ss_pred HHHHhcCCHHHHHHHHhhCcchhccchHHHHH---hcC--hhHHHHHHHHHHHhc
Confidence 999999865310 012333445677888654 555 346666666776654
No 177
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=20.72 E-value=2.2e+02 Score=21.48 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCCHhhHHHhh
Q 046820 235 ASALSVLDGICSTDCGRENAN 255 (350)
Q Consensus 235 e~aL~vL~~L~~~~eGr~ai~ 255 (350)
--|+-+|..++++.+|.+.+.
T Consensus 47 GT~fy~Lglis~T~~G~~~L~ 67 (73)
T PF14668_consen 47 GTCFYVLGLISSTEEGAEILD 67 (73)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 378888888888888888763
No 178
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=20.48 E-value=2.3e+02 Score=29.89 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHH
Q 046820 82 GCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGC 161 (350)
Q Consensus 82 ~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~ 161 (350)
...++-..|-..+|.+..-++..+ .+|| .++..| ++.+++|+.+++
T Consensus 20 ~~~~~y~~il~~~kg~~k~K~Laa--q~I~---kffk~F--------P~l~~~Ai~a~~--------------------- 65 (556)
T PF05918_consen 20 QHEEDYKEILDGVKGSPKEKRLAA--QFIP---KFFKHF--------PDLQEEAINAQL--------------------- 65 (556)
T ss_dssp GGHHHHHHHHHGGGS-HHHHHHHH--HHHH---HHHCC---------GGGHHHHHHHHH---------------------
T ss_pred cCHHHHHHHHHHccCCHHHHHHHH--HHHH---HHHhhC--------hhhHHHHHHHHH---------------------
Confidence 445677778888887766554433 2344 333322 346777777776
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC
Q 046820 162 MIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP 214 (350)
Q Consensus 162 Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~ 214 (350)
.+....+...|.+|..-|-.++... .+.+ +.++..|++||...
T Consensus 66 --DLcEDed~~iR~~aik~lp~~ck~~-----~~~v---~kvaDvL~QlL~td 108 (556)
T PF05918_consen 66 --DLCEDEDVQIRKQAIKGLPQLCKDN-----PEHV---SKVADVLVQLLQTD 108 (556)
T ss_dssp --HHHT-SSHHHHHHHHHHGGGG--T-------T-H---HHHHHHHHHHTT--
T ss_pred --HHHhcccHHHHHHHHHhHHHHHHhH-----HHHH---hHHHHHHHHHHhcc
Confidence 2333345556666666666555331 2222 34445566666543
No 179
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.10 E-value=1.1e+03 Score=25.83 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=47.1
Q ss_pred cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820 155 SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232 (350)
Q Consensus 155 ~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~ 232 (350)
..|+=..+|+=|...=.+.|..|+.-+++|+.... .+ ...++.-||+++.|.. ..-.-.|+.+|..++.
T Consensus 371 ~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP--~F------A~~aldfLvDMfNDE~-~~VRL~ai~aL~~Is~ 439 (823)
T KOG2259|consen 371 PSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP--GF------AVRALDFLVDMFNDEI-EVVRLKAIFALTMISV 439 (823)
T ss_pred cccccceeeeechHHHHHHHHHHHHHHHHHHcCCC--Cc------HHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHH
Confidence 44555666665555558999999999999986532 22 2578899999998763 3344556666666553
Done!