Query 046820
Match_columns 350
No_of_seqs 165 out of 753
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:51:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 99.9 7.8E-23 2.7E-27 199.2 22.3 246 81-336 47-335 (354)
2 3nmz_A APC variant protein; pr 99.9 3.6E-21 1.2E-25 193.3 21.9 244 83-336 165-451 (458)
3 3l6x_A Catenin delta-1; cateni 99.9 8.7E-21 3E-25 195.3 23.2 258 59-336 45-385 (584)
4 1xm9_A Plakophilin 1; armadill 99.9 4.5E-20 1.5E-24 184.7 23.9 254 63-335 3-360 (457)
5 3tt9_A Plakophilin-2; cell adh 99.9 8.1E-21 2.8E-25 174.8 16.2 198 61-289 7-230 (233)
6 4hxt_A De novo protein OR329; 99.8 6.7E-19 2.3E-23 158.7 23.9 240 63-338 3-244 (252)
7 4db8_A Armadillo-repeat protei 99.8 7E-19 2.4E-23 159.8 21.0 237 62-334 12-250 (252)
8 3ul1_B Importin subunit alpha- 99.8 1.9E-18 6.6E-23 174.9 22.3 255 62-335 57-345 (510)
9 3now_A UNC-45 protein, SD10334 99.8 1.9E-17 6.3E-22 176.0 25.6 252 64-335 423-737 (810)
10 3l6x_A Catenin delta-1; cateni 99.8 7.7E-18 2.6E-22 173.4 21.4 234 64-317 92-407 (584)
11 1xm9_A Plakophilin 1; armadill 99.8 8.3E-18 2.8E-22 168.2 20.6 256 64-334 46-448 (457)
12 3nmw_A APC variant protein; AR 99.8 3.5E-18 1.2E-22 166.3 17.1 201 80-291 98-337 (354)
13 4b8j_A Importin subunit alpha- 99.8 7.1E-17 2.4E-21 162.7 26.4 257 61-335 73-358 (528)
14 3nmz_A APC variant protein; pr 99.8 1.7E-17 5.7E-22 166.7 21.0 250 78-334 94-407 (458)
15 3tpo_A Importin subunit alpha- 99.8 7.5E-17 2.6E-21 163.7 24.8 256 61-335 75-364 (529)
16 3ul1_B Importin subunit alpha- 99.7 7.3E-17 2.5E-21 163.3 19.9 251 64-335 102-387 (510)
17 3now_A UNC-45 protein, SD10334 99.7 1.8E-16 6E-21 168.5 23.2 236 79-335 392-694 (810)
18 3tpo_A Importin subunit alpha- 99.7 2.5E-16 8.5E-21 159.9 23.3 251 64-335 121-406 (529)
19 4db6_A Armadillo repeat protei 99.7 4.3E-16 1.5E-20 137.7 18.8 198 107-335 11-209 (210)
20 4db6_A Armadillo repeat protei 99.7 8E-16 2.7E-20 136.0 19.7 193 66-288 16-209 (210)
21 3tt9_A Plakophilin-2; cell adh 99.7 1.2E-16 4.2E-21 146.8 13.3 197 109-334 9-228 (233)
22 4b8j_A Importin subunit alpha- 99.7 3E-15 1E-19 150.7 24.0 251 64-336 119-401 (528)
23 1jdh_A Beta-catenin; beta-cate 99.7 5E-15 1.7E-19 147.8 24.8 252 63-335 18-339 (529)
24 2z6h_A Catenin beta-1, beta-ca 99.7 7.4E-15 2.5E-19 152.2 25.6 252 63-335 15-336 (644)
25 1wa5_B Importin alpha subunit; 99.7 7.9E-15 2.7E-19 148.0 25.1 253 62-335 87-370 (530)
26 2jdq_A Importin alpha-1 subuni 99.7 2.3E-14 7.9E-19 139.9 26.1 251 64-335 22-305 (450)
27 2z6g_A B-catenin; FULL-length, 99.7 5.3E-15 1.8E-19 157.2 23.0 243 63-336 116-390 (780)
28 1jdh_A Beta-catenin; beta-cate 99.7 8E-15 2.7E-19 146.3 23.0 253 64-335 103-385 (529)
29 4db8_A Armadillo-repeat protei 99.7 1.2E-15 4.1E-20 138.3 15.0 185 78-288 66-251 (252)
30 2jdq_A Importin alpha-1 subuni 99.6 3.4E-14 1.2E-18 138.7 25.4 252 64-335 66-347 (450)
31 1wa5_B Importin alpha subunit; 99.6 2.2E-14 7.5E-19 144.8 23.6 251 64-335 132-412 (530)
32 4hxt_A De novo protein OR329; 99.6 1.5E-14 5.1E-19 130.1 18.2 199 64-292 46-245 (252)
33 2z6h_A Catenin beta-1, beta-ca 99.6 5.8E-14 2E-18 145.5 24.1 253 64-335 100-382 (644)
34 3opb_A SWI5-dependent HO expre 99.6 5.5E-14 1.9E-18 147.7 19.7 223 100-337 449-730 (778)
35 2z6g_A B-catenin; FULL-length, 99.6 1.9E-13 6.7E-18 145.2 24.3 243 78-335 246-518 (780)
36 1xqr_A HSPBP1 protein; armadil 99.6 3E-13 1E-17 128.4 20.5 203 61-290 27-240 (296)
37 1xqr_A HSPBP1 protein; armadil 99.4 3.1E-12 1.1E-16 121.4 16.3 183 130-335 55-238 (296)
38 3opb_A SWI5-dependent HO expre 99.3 3.1E-10 1.1E-14 119.4 21.2 249 62-335 330-635 (778)
39 3grl_A General vesicular trans 99.1 8.8E-09 3E-13 106.2 20.3 254 61-328 20-335 (651)
40 3ltm_A Alpha-REP4; protein eng 98.5 2.1E-05 7.3E-10 68.8 20.5 189 61-338 18-206 (211)
41 3ltj_A Alpharep-4; protein eng 98.3 0.00014 4.7E-09 63.1 20.5 188 58-334 10-197 (201)
42 3grl_A General vesicular trans 98.2 0.00019 6.3E-09 74.2 23.0 253 64-333 62-392 (651)
43 2bay_A PRE-mRNA splicing facto 98.0 5.4E-07 1.9E-11 65.2 -1.2 24 25-50 8-32 (61)
44 4gmo_A Putative uncharacterize 98.0 5.1E-05 1.7E-09 79.3 12.7 198 62-288 34-258 (684)
45 3ltm_A Alpha-REP4; protein eng 97.8 0.0022 7.6E-08 55.7 18.0 154 106-333 17-170 (211)
46 2kr4_A Ubiquitin conjugation f 97.7 4.1E-06 1.4E-10 64.4 -0.7 32 17-50 10-42 (85)
47 1oyz_A Hypothetical protein YI 97.7 0.0037 1.3E-07 56.8 18.9 30 258-287 158-187 (280)
48 2kre_A Ubiquitin conjugation f 97.6 6.4E-06 2.2E-10 65.4 -0.6 33 16-50 24-57 (100)
49 3ltj_A Alpharep-4; protein eng 97.6 0.0039 1.3E-07 53.7 17.2 153 107-333 13-165 (201)
50 3m62_A Ubiquitin conjugation f 97.6 7.4E-06 2.5E-10 87.6 -1.3 34 15-50 885-920 (968)
51 1wgm_A Ubiquitin conjugation f 97.6 1.1E-05 3.6E-10 63.9 -0.1 32 17-50 18-51 (98)
52 4gmo_A Putative uncharacterize 97.5 0.0017 5.8E-08 67.8 16.0 206 109-333 35-256 (684)
53 1oyz_A Hypothetical protein YI 97.5 0.021 7.1E-07 51.7 21.6 119 157-330 159-277 (280)
54 2f42_A STIP1 homology and U-bo 97.3 4.4E-05 1.5E-09 66.9 0.2 34 15-50 100-134 (179)
55 4fdd_A Transportin-1; heat rep 97.2 0.0089 3E-07 63.2 16.9 234 78-335 140-429 (852)
56 2yu4_A E3 SUMO-protein ligase 97.1 5.7E-05 2E-09 59.0 -0.8 28 21-50 8-36 (94)
57 2c2l_A CHIP, carboxy terminus 96.8 0.00027 9.3E-09 64.9 0.9 33 16-50 203-236 (281)
58 4fdd_A Transportin-1; heat rep 96.8 0.062 2.1E-06 56.7 19.2 232 78-334 102-387 (852)
59 2vgl_B AP-2 complex subunit be 96.8 0.073 2.5E-06 54.1 18.8 228 68-327 123-411 (591)
60 1ibr_B P95, importin beta-1 su 96.5 0.085 2.9E-06 50.4 16.1 247 64-337 130-439 (462)
61 1b3u_A Protein (protein phosph 96.1 0.35 1.2E-05 47.7 19.0 106 63-188 11-118 (588)
62 1b3u_A Protein (protein phosph 96.0 0.72 2.5E-05 45.3 20.6 210 79-335 100-310 (588)
63 2vgl_B AP-2 complex subunit be 95.7 0.039 1.3E-06 56.1 10.2 217 62-337 13-230 (591)
64 1u6g_C TIP120 protein, CAND1; 95.6 0.37 1.2E-05 52.9 17.9 248 61-337 5-286 (1230)
65 1ibr_B P95, importin beta-1 su 95.4 1.8 6.3E-05 40.9 21.0 159 156-335 127-288 (462)
66 2bpt_A Importin beta-1 subunit 95.3 2.8 9.7E-05 43.3 22.8 229 61-335 3-253 (861)
67 2qk1_A Protein STU2; STU2P, XM 95.1 0.35 1.2E-05 43.6 13.5 192 67-291 21-223 (249)
68 3dad_A FH1/FH2 domain-containi 95.0 0.53 1.8E-05 44.8 14.6 136 62-212 118-264 (339)
69 2qk2_A LP04448P; mini spindles 94.7 0.7 2.4E-05 40.7 14.0 131 79-231 70-204 (242)
70 1te4_A Conserved protein MTH18 94.6 0.1 3.5E-06 41.9 7.5 88 109-229 43-130 (131)
71 2qk2_A LP04448P; mini spindles 94.5 1.1 3.6E-05 39.5 14.8 162 161-338 19-208 (242)
72 1w63_A Adapter-related protein 94.5 2.9 0.0001 42.5 20.0 133 79-232 247-379 (618)
73 1w63_A Adapter-related protein 94.4 2 6.7E-05 43.8 18.4 155 67-245 108-280 (618)
74 3dad_A FH1/FH2 domain-containi 94.2 1.5 5.2E-05 41.7 15.7 156 158-333 119-284 (339)
75 3htk_C E3 SUMO-protein ligase 94.2 0.0063 2.1E-07 56.1 -0.8 24 25-50 186-210 (267)
76 2iw3_A Elongation factor 3A; a 94.2 4.9 0.00017 43.5 21.4 225 84-338 70-327 (986)
77 1qgr_A Protein (importin beta 94.1 3.6 0.00012 42.5 20.1 235 79-337 143-439 (876)
78 3b2a_A TON_1937, putative unch 93.8 2 6.7E-05 39.1 14.7 147 78-248 45-220 (265)
79 2bpt_A Importin beta-1 subunit 93.3 7.6 0.00026 40.0 20.7 243 79-336 148-441 (861)
80 1te4_A Conserved protein MTH18 93.2 0.16 5.4E-06 40.7 6.1 86 158-283 43-128 (131)
81 1t1h_A Gspef-atpub14, armadill 92.4 0.014 4.7E-07 43.1 -1.3 24 25-50 13-36 (78)
82 3b2a_A TON_1937, putative unch 92.1 2.3 7.7E-05 38.7 12.5 166 156-334 32-217 (265)
83 2vgl_A Adaptor protein complex 90.2 18 0.0006 36.8 21.6 223 78-336 341-590 (621)
84 2qk1_A Protein STU2; STU2P, XM 89.5 5.8 0.0002 35.4 13.1 139 79-231 74-219 (249)
85 2fv2_A RCD1 required for cell 86.2 15 0.0005 33.6 13.4 145 83-233 73-225 (268)
86 1qgr_A Protein (importin beta 86.0 26 0.0009 35.9 17.3 159 156-335 127-288 (876)
87 1u6g_C TIP120 protein, CAND1; 85.7 7.6 0.00026 42.4 13.5 180 128-335 19-204 (1230)
88 3tjz_B Coatomer subunit gamma; 85.5 25 0.00087 33.3 16.0 137 158-340 105-243 (355)
89 1x5b_A Signal transducing adap 79.3 9.4 0.00032 32.2 8.8 78 261-341 54-131 (163)
90 1x5b_A Signal transducing adap 78.8 8.6 0.00029 32.4 8.4 60 157-218 52-111 (163)
91 3zyq_A Hepatocyte growth facto 75.3 9.5 0.00033 33.8 8.1 76 261-339 47-122 (226)
92 4ffb_C Protein STU2; tubulin f 74.9 45 0.0015 29.5 12.9 188 68-291 15-215 (278)
93 2f31_A Diaphanous protein homo 74.5 6 0.00021 35.1 6.6 56 236-291 73-128 (233)
94 3ldz_A STAM-1, signal transduc 73.5 15 0.0005 30.1 8.2 77 261-341 44-120 (140)
95 1dvp_A HRS, hepatocyte growth 73.2 14 0.00046 32.5 8.5 78 261-341 44-121 (220)
96 3g2s_A C-terminal fragment of 73.0 18 0.00061 30.0 8.7 55 158-214 49-103 (149)
97 3eg5_B Protein diaphanous homo 71.2 18 0.0006 34.7 9.4 90 236-325 139-236 (383)
98 3ztg_A E3 ubiquitin-protein li 70.5 0.72 2.5E-05 34.6 -0.5 23 26-50 19-42 (92)
99 2db0_A 253AA long hypothetical 70.1 57 0.002 28.7 12.4 67 156-231 102-172 (253)
100 2vgl_A Adaptor protein complex 69.6 98 0.0034 31.2 22.9 106 158-291 112-219 (621)
101 1mhq_A ADP-ribosylation factor 69.4 22 0.00075 29.4 8.5 55 157-213 38-92 (148)
102 1juq_A ADP-ribosylation factor 69.0 17 0.00059 30.8 7.9 54 158-213 51-104 (171)
103 1juq_A ADP-ribosylation factor 67.9 17 0.00059 30.8 7.7 73 261-336 52-129 (171)
104 3zyq_A Hepatocyte growth facto 67.5 13 0.00044 33.0 7.1 63 157-221 45-107 (226)
105 3g2s_A C-terminal fragment of 67.3 20 0.00069 29.7 7.8 74 261-337 50-128 (149)
106 3oc3_A Helicase MOT1, MOT1; re 65.7 1.3E+02 0.0044 31.1 15.3 221 40-287 155-403 (800)
107 3ebb_A Phospholipase A2-activa 65.5 68 0.0023 29.6 11.9 131 132-282 165-300 (304)
108 1dvp_A HRS, hepatocyte growth 64.7 15 0.00052 32.2 7.0 58 158-217 43-100 (220)
109 3ldz_A STAM-1, signal transduc 64.4 23 0.00078 28.9 7.5 54 158-213 43-96 (140)
110 1mhq_A ADP-ribosylation factor 63.6 17 0.00059 30.0 6.7 73 261-336 40-117 (148)
111 3eg5_B Protein diaphanous homo 60.8 1.2E+02 0.0039 28.9 14.1 159 65-230 69-243 (383)
112 2bnx_A Diaphanous protein homo 60.5 17 0.00059 34.8 7.0 56 236-291 77-132 (386)
113 2f31_A Diaphanous protein homo 56.9 1E+02 0.0034 27.0 12.5 117 66-187 4-126 (233)
114 1elk_A Target of MYB1; superhe 56.4 35 0.0012 28.3 7.4 78 261-341 55-136 (157)
115 2fv2_A RCD1 required for cell 53.7 91 0.0031 28.4 10.1 92 236-333 75-172 (268)
116 1elk_A Target of MYB1; superhe 53.3 58 0.002 26.9 8.3 54 158-213 54-109 (157)
117 2yur_A Retinoblastoma-binding 52.8 3.8 0.00013 29.4 0.6 23 26-50 21-44 (74)
118 2iw3_A Elongation factor 3A; a 52.7 2.5E+02 0.0086 30.3 19.0 174 80-289 28-205 (986)
119 1jm7_B BARD1, BRCA1-associated 52.6 6.5 0.00022 30.8 2.1 23 26-50 28-51 (117)
120 1vdy_A Hypothetical protein (R 45.0 60 0.0021 26.6 6.9 74 261-338 51-133 (140)
121 3tjz_B Coatomer subunit gamma; 41.7 2.3E+02 0.0078 26.6 12.6 91 128-234 117-207 (355)
122 3fl2_A E3 ubiquitin-protein li 41.4 4.1 0.00014 32.2 -0.8 23 26-50 58-80 (124)
123 4ady_A RPN2, 26S proteasome re 38.6 4E+02 0.014 28.6 14.9 29 306-334 612-640 (963)
124 3ebb_A Phospholipase A2-activa 36.1 2.6E+02 0.0087 25.6 14.9 240 59-333 52-304 (304)
125 1z6u_A NP95-like ring finger p 34.5 6.3 0.00021 32.6 -0.8 23 26-50 84-106 (150)
126 2ecy_A TNF receptor-associated 34.4 8.5 0.00029 26.6 0.0 22 27-50 22-43 (66)
127 4ady_A RPN2, 26S proteasome re 34.2 4.7E+02 0.016 28.1 18.1 32 259-290 611-643 (963)
128 2ysj_A Tripartite motif-contai 33.1 8.2 0.00028 26.3 -0.2 22 27-50 27-48 (63)
129 2egp_A Tripartite motif-contai 29.7 13 0.00044 26.4 0.3 22 27-50 19-40 (79)
130 3u0r_A Apoptosis inhibitor 5; 29.1 2.1E+02 0.0073 28.4 9.0 110 167-285 38-160 (507)
131 1bor_A Transcription factor PM 29.0 28 0.00096 23.2 2.0 22 27-50 13-34 (56)
132 3rru_A TOM1L1 protein; structu 28.4 78 0.0027 26.1 5.0 78 261-341 55-136 (152)
133 2bnx_A Diaphanous protein homo 28.4 3.8E+02 0.013 25.2 13.6 158 66-230 8-181 (386)
134 2ecj_A Tripartite motif-contai 28.3 15 0.0005 24.3 0.4 23 26-50 21-43 (58)
135 1jm7_A BRCA1, breast cancer ty 26.7 19 0.00065 27.4 0.9 23 26-50 27-49 (112)
136 1wa5_C Importin alpha RE-expor 26.0 5.8E+02 0.02 26.6 13.6 118 86-232 23-152 (960)
137 4ayc_A E3 ubiquitin-protein li 25.5 10 0.00036 30.5 -0.9 23 26-50 59-81 (138)
138 2of3_A ZYG-9; multifunctional 25.5 3.7E+02 0.013 24.1 12.3 65 158-231 168-235 (266)
139 2ckl_A Polycomb group ring fin 25.3 11 0.00037 28.9 -0.9 23 26-50 21-44 (108)
140 2csy_A Zinc finger protein 183 24.7 11 0.00039 27.1 -0.8 23 26-50 21-43 (81)
141 1rmd_A RAG1; V(D)J recombinati 24.4 12 0.0004 29.1 -0.8 22 27-50 30-51 (116)
142 3l11_A E3 ubiquitin-protein li 22.8 18 0.0006 28.0 -0.0 22 27-50 22-43 (115)
143 2ecv_A Tripartite motif-contai 22.8 30 0.001 24.5 1.3 22 27-50 26-47 (85)
144 2y43_A E3 ubiquitin-protein li 22.2 14 0.00048 27.7 -0.7 22 27-50 29-51 (99)
145 2x19_B Importin-13; nuclear tr 21.2 6.9E+02 0.024 25.7 12.1 134 79-231 462-598 (963)
146 2djb_A Polycomb group ring fin 20.3 20 0.00067 25.1 -0.2 22 27-50 22-44 (72)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.91 E-value=7.8e-23 Score=199.18 Aligned_cols=246 Identities=13% Similarity=0.126 Sum_probs=204.6
Q ss_pred hHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhc----cccccccchHHHHHHHHHHHhhCCCCh-hhHhhcc-
Q 046820 81 VGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESF----SKTCLDENVSVLEEILSTLILLFPLEG-EALTHLG- 154 (350)
Q Consensus 81 ~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~----~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~- 154 (350)
+.+++|+..|.+++.+ ++||.+|.+.|++++|+.+|.+- .......+..++++|..+|. ||..++ ++|..+.
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~-nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT-NLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH-HHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHH-HHHcCCHHHHHHHHH
Confidence 5567899999999987 78999999999999999999521 00000123568999999999 898665 5887775
Q ss_pred cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh-h
Q 046820 155 SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA-S 233 (350)
Q Consensus 155 ~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~-~ 233 (350)
..|+|+.|+.+|++++.+.+++|+.+|.+|+...+ +.++..|.+ .|+|+.||++|....++...+.|+.+|+||+. .
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~i~~-~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC-HHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC-HHHHHHHHH-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 56789999999999999999999999999986422 478888866 79999999986544477888999999999975 2
Q ss_pred --H------------------------------HHHHHHHHHHhC----CHhhHHHhhcCCCChHHHHHHHhccChhHHH
Q 046820 234 --S------------------------------ASALSVLDGICS----TDCGRENANDKPLTMPVVVKKILRVSELATE 277 (350)
Q Consensus 234 --~------------------------------e~aL~vL~~L~~----~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E 277 (350)
+ +.|..+|.+|+. ++++|..+. +.|+||.||+.|..++...++
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-TTTHHHHHHHHTTCSCHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HcCCHHHHHHHHcCCChHHHH
Confidence 1 357888999984 899998885 789999999999999999999
Q ss_pred HHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820 278 LSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336 (350)
Q Consensus 278 ~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~ 336 (350)
+|+.+|+++|..+ .+..+.+++.|+++.|+.+|+++ +++.|+.|...|..|...
T Consensus 282 ~A~~aL~nLa~~~----~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 282 NACGTLWNLSARN----PKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHHHTSSC----HHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCC----HHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcC
Confidence 9999999999743 45778888999999999988865 789999999999999874
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.87 E-value=3.6e-21 Score=193.35 Aligned_cols=244 Identities=13% Similarity=0.131 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhc----cccccccchHHHHHHHHHHHhhCCCCh-hhHhhcc-cC
Q 046820 83 CKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESF----SKTCLDENVSVLEEILSTLILLFPLEG-EALTHLG-SA 156 (350)
Q Consensus 83 ~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~----~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~-~~ 156 (350)
+++|+..|.+++.+ ++||.+|.+.|++++|+.+|..- .......+..++++|..+|. ||..++ ++|..+. ..
T Consensus 165 ~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~-nLa~~~~~~k~~i~~~~ 242 (458)
T 3nmz_A 165 ICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT-NLTFGDVANKATLCSMK 242 (458)
T ss_dssp THHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH-HHhCCCcccHHHHHHcC
Confidence 45899999999765 89999999999999999999521 00000123568999999999 888665 5777774 56
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh-hH-
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA-SS- 234 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~-~~- 234 (350)
|+|+.|+.+|++++.+.+++|+.+|.+|+...+ +.++..|.+ .|+|+.||++|....++...+.|+.+|+||+. ..
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~ 320 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCC-HHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC-HHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHH
Confidence 789999999999999999999999999986422 478888866 89999999987554477889999999999975 21
Q ss_pred -------------------------------HHHHHHHHHHh----CCHhhHHHhhcCCCChHHHHHHHhccChhHHHHH
Q 046820 235 -------------------------------ASALSVLDGIC----STDCGRENANDKPLTMPVVVKKILRVSELATELS 279 (350)
Q Consensus 235 -------------------------------e~aL~vL~~L~----~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~A 279 (350)
+.|..+|.+|+ ..++.+..|. +.|+||.||++|..++...++.|
T Consensus 321 nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~G~i~~Lv~LL~~~~~~v~~~A 399 (458)
T 3nmz_A 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIVSNA 399 (458)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHSSCSCHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HcccHHHHHHHHcCCChHHHHHH
Confidence 24788999998 5899999886 68899999999998999999999
Q ss_pred HHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820 280 VSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336 (350)
Q Consensus 280 v~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~ 336 (350)
+.+|++++..+ .+....+++.|+++.|+.+|+++ +++.|+.|...|+.|...
T Consensus 400 ~~aL~nLa~~~----~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 400 CGTLWNLSARN----PKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHSSC----HHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCC----HHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcC
Confidence 99999999743 45788888999999999988865 789999999999998864
No 3
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.87 E-value=8.7e-21 Score=195.32 Aligned_cols=258 Identities=14% Similarity=0.102 Sum_probs=205.8
Q ss_pred CCcchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHH
Q 046820 59 VCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILST 138 (350)
Q Consensus 59 ~~~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~ 138 (350)
+....+..+|..|.+ ++++.+..|+..|+.++..++.||..|++.|+||.|+.+|. .+ +..++++|+.+
T Consensus 45 ~~~~~i~~LV~~L~s----~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~---s~----~~~vq~~Aa~A 113 (584)
T 3l6x_A 45 WRQPELPEVIAMLGF----RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD---HP----KKEVHLGACGA 113 (584)
T ss_dssp CCCCCHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG---CS----SHHHHHHHHHH
T ss_pred cccccHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC---CC----CHHHHHHHHHH
Confidence 344578899999976 46788889999999999999999999999999999999997 22 47899999999
Q ss_pred HHhhCCCC--hhhHhhcccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhc---
Q 046820 139 LILLFPLE--GEALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE--- 212 (350)
Q Consensus 139 L~~~Ls~~--~e~k~~i~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~--- 212 (350)
|. ||+.. +++|..|.+.|+|+.|+.+|+++ +.+.+++|+.+|.+|+.. ++++..|. .++++.||++|.
T Consensus 114 L~-nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~---~~~k~~I~--~~alp~Lv~LL~~p~ 187 (584)
T 3l6x_A 114 LK-NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH---DSIKMEIV--DHALHALTDEVIIPH 187 (584)
T ss_dssp HH-HHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS---GGGHHHHH--HHTHHHHHHHTHHHH
T ss_pred HH-HHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC---chhhHHHH--hccHHHHHHHHhccc
Confidence 99 99974 69999999999999999999984 789999999999999975 47888885 467999999872
Q ss_pred --------------CCCChHHHHHHHHHHHHhhhhH-----------------------------------HHHHHHHHH
Q 046820 213 --------------EPISPTATKAALVVIYHTIASS-----------------------------------ASALSVLDG 243 (350)
Q Consensus 213 --------------~~~~~~a~k~Al~aL~~L~~~~-----------------------------------e~aL~vL~~ 243 (350)
+..++...+.|..+|+||+..+ |.|+.+|.+
T Consensus 188 sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~N 267 (584)
T 3l6x_A 188 SGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN 267 (584)
T ss_dssp HCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHH
Confidence 1124577888999999996421 358899999
Q ss_pred HhCCHh--------------------------hHHHhhcCCCChHHHHHHHhc-cChhHHHHHHHHHHHHccccccchHH
Q 046820 244 ICSTDC--------------------------GRENANDKPLTMPVVVKKILR-VSELATELSVSILWKLCMNEKREEKT 296 (350)
Q Consensus 244 L~~~~e--------------------------Gr~ai~~~~~~v~~lv~~l~~-~S~~~~E~Av~iL~~Lc~~~~~~~~~ 296 (350)
||...+ |.+.+ -++++|+.++.+|.. .++..+|.|+.+|++||...... ..
T Consensus 268 Ls~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L-~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~-~~ 345 (584)
T 3l6x_A 268 LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELL-FQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY-GR 345 (584)
T ss_dssp HHTTHHHHSTTCCC--------------CCCCGGGGG-GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH-HH
T ss_pred hhccccccccchhhhhhhcccccccccccCchhHHHH-hcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc-cH
Confidence 987532 22222 244556778888854 46888999999999999854211 11
Q ss_pred HHHHHH-hhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820 297 AFVEAL-QVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336 (350)
Q Consensus 297 ~~~~~~-~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~ 336 (350)
..+.++ ++|+++.|+.+|+.+ ++..++.|..+|+.|...
T Consensus 346 ~~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~ 385 (584)
T 3l6x_A 346 YIRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVD 385 (584)
T ss_dssp HHHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC
Confidence 223344 689999999999876 789999999999999874
No 4
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.86 E-value=4.5e-20 Score=184.71 Aligned_cols=254 Identities=13% Similarity=0.077 Sum_probs=199.2
Q ss_pred hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhh
Q 046820 63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL 142 (350)
Q Consensus 63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~ 142 (350)
.+..+++.|.+ ++++.+..|+..|+.++..++.+|..+.++|+||.|+.+|. ++ +..+++.|..+|. |
T Consensus 3 ~l~~lv~~L~s----~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~---s~----~~~~~~~A~~aL~-n 70 (457)
T 1xm9_A 3 TIPKAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR---SP----NQNVQQAAAGALR-N 70 (457)
T ss_dssp CHHHHHHHHHS----SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT---SS----CHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc---CC----CHHHHHHHHHHHH-H
Confidence 46678888876 36788999999999999988888999999999999999996 22 4778999999999 8
Q ss_pred CCCC-hhhHhhcccCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhc--------
Q 046820 143 FPLE-GEALTHLGSASSMGCMIWFLN-SGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE-------- 212 (350)
Q Consensus 143 Ls~~-~e~k~~i~~~~~l~~Lv~~L~-~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~-------- 212 (350)
|+.+ +++|..|.+.|+++.|+.+|+ +++.+.+++|+.+|.+|+.. + +++..|.+ |+++.|+++|.
T Consensus 71 La~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~--~~~~~i~~--g~i~~Lv~ll~~~~s~~~~ 145 (457)
T 1xm9_A 71 LVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-D--ELKEELIA--DALPVLADRVIIPFSGWCD 145 (457)
T ss_dssp HHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-S--STHHHHHH--HHHHHHHHHTTHHHHTCC-
T ss_pred HhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-H--HhHHHHHh--ccHHHHHHHHhcccccccc
Confidence 8866 799999999999999999999 88999999999999999976 3 68887744 99999999993
Q ss_pred CC-------CChHHHHHHHHHHHHhhhhH----------------------------------HHHHHHHHHHhCC----
Q 046820 213 EP-------ISPTATKAALVVIYHTIASS----------------------------------ASALSVLDGICST---- 247 (350)
Q Consensus 213 ~~-------~~~~a~k~Al~aL~~L~~~~----------------------------------e~aL~vL~~L~~~---- 247 (350)
++ .++...+.|..+|+|||... +.|+.+|.+|+..
T Consensus 146 ~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~ 225 (457)
T 1xm9_A 146 GNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE 225 (457)
T ss_dssp --------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHH
T ss_pred CccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhcc
Confidence 22 12344568999999997531 2345666666521
Q ss_pred -----------------------------------------------HhhHHHhhcCCCChHHHHHHHhcc-ChhHHHHH
Q 046820 248 -----------------------------------------------DCGRENANDKPLTMPVVVKKILRV-SELATELS 279 (350)
Q Consensus 248 -----------------------------------------------~eGr~ai~~~~~~v~~lv~~l~~~-S~~~~E~A 279 (350)
++|.+.+ -+.++|+.++..|... ++..+|.|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~l~~L~~lL~~~~~~~~~e~a 304 (457)
T 1xm9_A 226 VPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL-YHSDAIRTYLNLMGKSKKDATLEAC 304 (457)
T ss_dssp SCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG-GSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH-hCcchHHHHHHHHhhcCCHHHHHHH
Confidence 1222333 3566788888888765 57889999
Q ss_pred HHHHHHHccccccchHHHHHHHH-hhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 280 VSILWKLCMNEKREEKTAFVEAL-QVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 280 v~iL~~Lc~~~~~~~~~~~~~~~-~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
+.+|+++|...........+.++ +.|+++.|+.+|+.+ +++.|+.|..+|+.|..
T Consensus 305 ~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSR 360 (457)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhc
Confidence 99999999865321112324455 689999999998866 78999999999999976
No 5
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=8.1e-21 Score=174.78 Aligned_cols=198 Identities=15% Similarity=0.125 Sum_probs=161.7
Q ss_pred cchHHHHHHHhHhhhccCCh--hHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHH
Q 046820 61 SVEVLEINSKIKTACETQDQ--VGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILST 138 (350)
Q Consensus 61 ~~~v~~lv~~l~~~~~~~~~--~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~ 138 (350)
...+..+|+.|.+. |+ +.+..|+..|+.+++.++.||..|.+.|+||.|+.+|. .+ +.+++++|+.+
T Consensus 7 ~~~i~~lV~lL~s~----~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~---s~----~~~vq~~Aa~a 75 (233)
T 3tt9_A 7 EMTLERAVSMLEAD----HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK---VQ----NEDVQRAVCGA 75 (233)
T ss_dssp CCCHHHHHHTCCSS----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGG---CC----CHHHHHHHHHH
T ss_pred hccHHHHHHHhCCC----CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHc---CC----CHHHHHHHHHH
Confidence 34677888888764 44 56778999999999999999999999999999999997 22 37899999999
Q ss_pred HHhhCCCC-hhhHhhcccCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcC---
Q 046820 139 LILLFPLE-GEALTHLGSASSMGCMIWFLN-SGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEE--- 213 (350)
Q Consensus 139 L~~~Ls~~-~e~k~~i~~~~~l~~Lv~~L~-~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~--- 213 (350)
|. ||+.+ +++|..|.+.|+|+.|+++|+ +++.+.+++|+.+|++||.. +.+|..|.+ ++|++|++++..
T Consensus 76 L~-nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~---~~~k~~i~~--~~i~~Lv~ll~~p~s 149 (233)
T 3tt9_A 76 LR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN---DKLKNLMIT--EALLTLTENIIIPFS 149 (233)
T ss_dssp HH-HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS---GGGHHHHHH--HHHHHHCCCCCHHHH
T ss_pred HH-HHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC---hhhHHHHHh--ccHHHHHHHHhcccc
Confidence 99 99874 689999999999999999998 57999999999999999976 378888844 679999997741
Q ss_pred C------------CChHHHHHHHHHHHHhhhhHHHHHHHHHHHhC-CHhhHHHhhcCCCChHHHHHHHhcc------Chh
Q 046820 214 P------------ISPTATKAALVVIYHTIASSASALSVLDGICS-TDCGRENANDKPLTMPVVVKKILRV------SEL 274 (350)
Q Consensus 214 ~------------~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~-~~eGr~ai~~~~~~v~~lv~~l~~~------S~~ 274 (350)
+ .++.... -|..+|.+|+. .+++|.+|...+|.|++||..+... ++.
T Consensus 150 G~~~~~~~~~~~~~~~~v~~--------------na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k 215 (233)
T 3tt9_A 150 GWPEGDYPKANGLLDFDIFY--------------NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDK 215 (233)
T ss_dssp CCCGGGCCCCCTTCCHHHHH--------------HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCH
T ss_pred CCcccccccccccchHHHHH--------------HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhH
Confidence 1 1223333 44555566655 5799999988888999999998753 457
Q ss_pred HHHHHHHHHHHHccc
Q 046820 275 ATELSVSILWKLCMN 289 (350)
Q Consensus 275 ~~E~Av~iL~~Lc~~ 289 (350)
.+|+||.+|++||..
T Consensus 216 ~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 216 ATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhh
Confidence 899999999999974
No 6
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.84 E-value=6.7e-19 Score=158.71 Aligned_cols=240 Identities=18% Similarity=0.210 Sum_probs=197.7
Q ss_pred hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhh
Q 046820 63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL 142 (350)
Q Consensus 63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~ 142 (350)
.+..++..+.+ .+++.+..|+..|..++..++.++..+.+.|++|.|+.+|. ++ +.++++.|+.+|. +
T Consensus 3 ~i~~L~~~L~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~---~~----~~~v~~~a~~~L~-~ 70 (252)
T 4hxt_A 3 DVEKLVKLLTS----TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT---ST----DSEVQKEAARALA-N 70 (252)
T ss_dssp HHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CS----CHHHHHHHHHHHH-H
T ss_pred cHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh---CC----CHHHHHHHHHHHH-H
Confidence 35567777765 35678889999999999999899999999999999999996 22 3778999999999 7
Q ss_pred CCCC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820 143 FPLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK 221 (350)
Q Consensus 143 Ls~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k 221 (350)
++.+ ++++..+.+.+.++.++.+|++++.+.+.+|+.+|.+|+... +.++..+.. .|+++.|+++++++ ++....
T Consensus 71 l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~-~~~i~~L~~~l~~~-~~~~~~ 146 (252)
T 4hxt_A 71 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DEAIKAIVD-AGGVEVLVKLLTST-DSEVQK 146 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHH-TTHHHHHHHHTTCS-CHHHHH
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHH-CCCHHHHHHHHcCC-CHHHHH
Confidence 8766 688888888999999999999999999999999999999654 477777756 89999999999976 555555
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhCCHhh-HHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHH
Q 046820 222 AALVVIYHTIASSASALSVLDGICSTDCG-RENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVE 300 (350)
Q Consensus 222 ~Al~aL~~L~~~~e~aL~vL~~L~~~~eG-r~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~ 300 (350)
.|+.+|.+++ ...+. +..+ .+.++++.+++.+...++..++.|+.+|.++|..+ +.....
T Consensus 147 ~a~~~L~~l~--------------~~~~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~~~~ 207 (252)
T 4hxt_A 147 EAARALANIA--------------SGPDEAIKAI-VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP----TSAIKA 207 (252)
T ss_dssp HHHHHHHHHT--------------TSCHHHHHHH-HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB----HHHHHH
T ss_pred HHHHHHHHHH--------------cCCHHHHHHH-HHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC----HHHHHH
Confidence 5555555554 43333 3445 46899999999998888899999999999999853 457778
Q ss_pred HHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccC
Q 046820 301 ALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRD 338 (350)
Q Consensus 301 ~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~ 338 (350)
+.+.|+++.|+.+++.+ .+..|+.|...|..+.....
T Consensus 208 l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 208 IVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHTCB
T ss_pred HHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCCC
Confidence 88999999999988854 78999999999999988554
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.82 E-value=7e-19 Score=159.85 Aligned_cols=237 Identities=16% Similarity=0.229 Sum_probs=192.3
Q ss_pred chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820 62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL 141 (350)
Q Consensus 62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~ 141 (350)
.....++..|.+. |++.+..|+..|+.+...++.++..+.+.|++|.|+.+|. ++ +..+++.|+.+|.
T Consensus 12 ~~~~~~~~~L~s~----~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~---~~----~~~v~~~a~~~L~- 79 (252)
T 4db8_A 12 SELPQMTQQLNSD----DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS---SP----NEQILQEALWALS- 79 (252)
T ss_dssp CSHHHHHHHHHSS----CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG---CS----CHHHHHHHHHHHH-
T ss_pred chHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc---CC----CHHHHHHHHHHHH-
Confidence 4566788888774 5688999999998777667889999999999999999996 22 3678999999999
Q ss_pred hCCC-ChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHH-hhhhchhhHHHHHHHHhcCCCChHH
Q 046820 142 LFPL-EGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKV-NVLSENEGAIEALFKLIEEPISPTA 219 (350)
Q Consensus 142 ~Ls~-~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~-~~Ig~~~g~i~~LV~lL~~~~~~~a 219 (350)
++.. +++++..+.+.|.++.|+.+|++++.+.|.+|+.+|.+|+... ..+ ..+.. .|+++.|+++|+++ ++..
T Consensus 80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~-~~~i~~L~~lL~~~-~~~v 154 (252)
T 4db8_A 80 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---NEQIQAVID-AGALPALVQLLSSP-NEQI 154 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHH-TTHHHHHHHGGGCS-CHHH
T ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC---chHHHHHHH-CCCHHHHHHHHhCC-CHHH
Confidence 7876 4588888888899999999999999999999999999998764 444 55545 79999999999876 6666
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHH
Q 046820 220 TKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFV 299 (350)
Q Consensus 220 ~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~ 299 (350)
...|+.+|.+|+.. .++.+..+ .+.++++.+++.+...++..++.|+.+|.++|..+ +....
T Consensus 155 ~~~a~~~L~~l~~~-------------~~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~~~ 216 (252)
T 4db8_A 155 LQEALWALSNIASG-------------GNEQIQAV-IDAGALPALVQLLSSPNEQILQEALWALSNIASGG----NEQKQ 216 (252)
T ss_dssp HHHHHHHHHHHTTS-------------CHHHHHHH-HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC----HHHHH
T ss_pred HHHHHHHHHHHHcC-------------ChHHHHHH-HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC----HHHHH
Confidence 66666666665532 23444444 46899999999998888899999999999999754 45677
Q ss_pred HHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820 300 EALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMN 334 (350)
Q Consensus 300 ~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~ 334 (350)
.+.+.|+++.|+.+++.+ .+..|+.|...|..|.
T Consensus 217 ~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 217 AVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHTTC
T ss_pred HHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHHHh
Confidence 788999999999888865 7899999998887653
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.81 E-value=1.9e-18 Score=174.91 Aligned_cols=255 Identities=12% Similarity=0.089 Sum_probs=206.5
Q ss_pred chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHh-cCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820 62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAK-ESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI 140 (350)
Q Consensus 62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak-~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~ 140 (350)
..+.++|+.+.+ +|.+.+.+|+..+|++.. +...-...|.++|+||.|+.+|.. .+ ++.+|.+|..+|.
T Consensus 57 ~~i~~~v~~l~s----~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~--~~----~~~lq~~Aa~aL~ 126 (510)
T 3ul1_B 57 WSVEDIVKGINS----NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TD----CSPIQFESAWALT 126 (510)
T ss_dssp CCHHHHHHHHTS----SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC--TT----CHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcC----CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC--CC----CHHHHHHHHHHHH
Confidence 358899999987 478999999999998654 333334678899999999999962 22 4678999999999
Q ss_pred hhCC-CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCC----
Q 046820 141 LLFP-LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPI---- 215 (350)
Q Consensus 141 ~~Ls-~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~---- 215 (350)
|++ -+++++..+.+.|+++.|+.+|++++.+.|++|+.+|.+|+.+. +.++..+-. .|+++.|+.+|.++.
T Consensus 127 -nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~--~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~ 202 (510)
T 3ul1_B 127 -NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIK-HGAIDPLLALLAVPDLSTL 202 (510)
T ss_dssp -HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTCHHHHHHHTCSSCGGGS
T ss_pred -HHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHH-cCChHHHHHHHHhccchhh
Confidence 885 45588888899999999999999999999999999999999764 477877745 899999999998652
Q ss_pred ChHHHHHHHHHHHHhhhhH----------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHH
Q 046820 216 SPTATKAALVVIYHTIASS----------------------------ASALSVLDGICSTDCGRENANDKPLTMPVVVKK 267 (350)
Q Consensus 216 ~~~a~k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~ 267 (350)
.....+.+..+|.+++... ..++.+|.+|+.....+..+....|+++.|+++
T Consensus 203 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 282 (510)
T 3ul1_B 203 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 282 (510)
T ss_dssp CHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhh
Confidence 2235677888888886421 368889999998766666665689999999999
Q ss_pred HhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 268 ILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 268 l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
+...+...++.|+.+|++++..+ +.....+++.|+++.|..+|+.. .+..|+.|...|..+..
T Consensus 283 L~~~~~~v~~~al~aL~nl~~~~----~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 283 LGATELPIVTPALRAIGNIVTGT----DEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA 345 (510)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTT
T ss_pred hcCCChhhhhHHHHHHHHhhcCC----HHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHc
Confidence 98888899999999999999854 45777788999999988888754 68899999888887754
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.78 E-value=1.9e-17 Score=176.00 Aligned_cols=252 Identities=10% Similarity=0.048 Sum_probs=205.4
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCcc-----------------------------cc---chhhccCchH
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESES-----------------------------NK---SCIVDNAAVS 111 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~-----------------------------nR---~~i~~aGai~ 111 (350)
+..|+.-+++ ++...+..|+..|.+++..++. ++ ..+.++|++|
T Consensus 423 Ip~LV~LL~s----~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 423 IHALMDLARG----GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp HHHHHHHHHT----TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHhCC----CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 4556666654 4567788999999999986532 23 5788999999
Q ss_pred HHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCch
Q 046820 112 VLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQ 191 (350)
Q Consensus 112 ~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~ 191 (350)
.|+.+|. ++ ++.++++|+.+|. |++.+++++..+.+.|++++|+.+|++|+...|.+|+.+|.+|+...+ +
T Consensus 499 ~LV~LL~---s~----s~~vqe~Aa~aL~-NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~-p 569 (810)
T 3now_A 499 ALCALAK---TE----SHNSQELIARVLN-AVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN-P 569 (810)
T ss_dssp HHHHHHT---CC----CHHHHHHHHHHHH-HHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC-H
T ss_pred HHHHHHc---CC----CHHHHHHHHHHHH-HHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC-h
Confidence 9999997 22 3779999999999 898777899989899999999999999999999999999999986532 2
Q ss_pred hHHhhhh--chhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH----------------------------HHHHHHH
Q 046820 192 RKVNVLS--ENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS----------------------------ASALSVL 241 (350)
Q Consensus 192 ~~~~~Ig--~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~----------------------------e~aL~vL 241 (350)
. ..++ ...|++++|+.+|..+.+.....+|+.+|.||+..+ +.|+.+|
T Consensus 570 ~--~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L 647 (810)
T 3now_A 570 E--VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL 647 (810)
T ss_dssp H--HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred h--hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2 2221 125799999999986545455678999999997531 4799999
Q ss_pred HHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHh-hchHHHHHHHHHhcCch
Q 046820 242 DGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQ-VGAFQKLLVLLQVGCAE 320 (350)
Q Consensus 242 ~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~-~G~v~~LL~llq~~~t~ 320 (350)
.+|+.+++.+..+....++++.|+.++...+...++.|+.+|++++..+ +...+.+++ .|+++.|+.+++.+ .+
T Consensus 648 ~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s----~~~~~~ii~~~g~I~~Lv~LL~s~-d~ 722 (810)
T 3now_A 648 CNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS----VKCCEKILAIASWLDILHTLIANP-SP 722 (810)
T ss_dssp HHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC----HHHHHHHHTSTTHHHHHHHHHTCS-SH
T ss_pred HHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC----HHHHHHHHHHcCCHHHHHHHHCCC-CH
Confidence 9999999999998744789999999887777889999999999999853 346777787 89999999999865 78
Q ss_pred HHHHHHHHHHHHHHh
Q 046820 321 RTKEKASEVLKLMNL 335 (350)
Q Consensus 321 ~ak~kA~~LLk~l~~ 335 (350)
..|+.|...|..+-.
T Consensus 723 ~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 723 AVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998877754
No 10
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.78 E-value=7.7e-18 Score=173.41 Aligned_cols=234 Identities=13% Similarity=0.122 Sum_probs=185.9
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhc-CccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhh
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKE-SESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL 142 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~-s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~ 142 (350)
|..||+-|.+ ++...+..|+..|++|+.. ++.||..|+++|+||.|+.+|.+ .. +.+++++|..+|. +
T Consensus 92 Ip~LV~LL~s----~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s--~~----~~~~~e~aa~aL~-n 160 (584)
T 3l6x_A 92 IPVLVGLLDH----PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK--AR----DMDLTEVITGTLW-N 160 (584)
T ss_dssp HHHHHHGGGC----SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHH--CC----SHHHHHHHHHHHH-H
T ss_pred cHHHHHHHCC----CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcC--CC----CHHHHHHHHHHHH-H
Confidence 4455655554 4678899999999999985 78999999999999999999972 12 3678999999998 8
Q ss_pred CCCChhhHhhcccCCcHHHHHHHHc---c---------------CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHH
Q 046820 143 FPLEGEALTHLGSASSMGCMIWFLN---S---------------GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAI 204 (350)
Q Consensus 143 Ls~~~e~k~~i~~~~~l~~Lv~~L~---~---------------gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i 204 (350)
|+.++++|..|.+ ++++.|+.+|. + .+.+.+++|+.+|++|++.. ++++..|.+..|+|
T Consensus 161 LS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~--~~~R~~i~~~~Gli 237 (584)
T 3l6x_A 161 LSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSER--SEARRKLRECDGLV 237 (584)
T ss_dssp HTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSC--HHHHHHHHHSTTHH
T ss_pred HhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCC--HHHHHHHHHcCCcH
Confidence 9988899988875 57999999872 1 14688999999999999764 46677776768999
Q ss_pred HHHHHHhcC-----CCChHHHHHHHHHHHHhhhh----------------------------------------------
Q 046820 205 EALFKLIEE-----PISPTATKAALVVIYHTIAS---------------------------------------------- 233 (350)
Q Consensus 205 ~~LV~lL~~-----~~~~~a~k~Al~aL~~L~~~---------------------------------------------- 233 (350)
+.||.+|++ ..+...++.|+.+|.|||..
T Consensus 238 ~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL 317 (584)
T 3l6x_A 238 DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLL 317 (584)
T ss_dssp HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHH
Confidence 999999974 23567889999999887521
Q ss_pred --------HHHHHHHHHHHhCCH----hhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHH
Q 046820 234 --------SASALSVLDGICSTD----CGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEA 301 (350)
Q Consensus 234 --------~e~aL~vL~~L~~~~----eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~ 301 (350)
.|.|..+|.+||.+. +.-..++.+.+++|.||++|...++..++.|+.+|.+|+....+ ++.
T Consensus 318 ~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~------~~~ 391 (584)
T 3l6x_A 318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN------KEL 391 (584)
T ss_dssp HHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC------HHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH------HHH
Confidence 157889999998752 22223446788899999999889999999999999999986532 234
Q ss_pred HhhchHHHHHHHHHhc
Q 046820 302 LQVGAFQKLLVLLQVG 317 (350)
Q Consensus 302 ~~~G~v~~LL~llq~~ 317 (350)
+..|+++.|+.+|..+
T Consensus 392 I~~g~ip~LV~LL~~~ 407 (584)
T 3l6x_A 392 IGKHAIPNLVKNLPGG 407 (584)
T ss_dssp HHHHHHHHHHHTSSSS
T ss_pred HHhCCHHHHHHHhcCC
Confidence 4789999999888754
No 11
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.78 E-value=8.3e-18 Score=168.24 Aligned_cols=256 Identities=11% Similarity=0.116 Sum_probs=187.0
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
+..+++-|.+ +++..+..|+..|++|+..+++||..|+++|+||.|+.+|.. ++ +.+++++|+.+|. ||
T Consensus 46 i~~Lv~lL~s----~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~--~~----~~~~~~~a~~aL~-nL 114 (457)
T 1xm9_A 46 ICKLVDLLRS----PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR--TG----NAEIQKQLTGLLW-NL 114 (457)
T ss_dssp HHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT--CC----CHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh--CC----CHHHHHHHHHHHH-HH
Confidence 5566666664 467888999999999999889999999999999999999961 12 3679999999999 89
Q ss_pred CCChhhHhhcccCCcHHHHHHHH--------ccCCHHHHH--------HHHHHHHHHhcCCCchhHHhhhhchhhHHHHH
Q 046820 144 PLEGEALTHLGSASSMGCMIWFL--------NSGDLSRRR--------NAVLLLTELVSSDSDQRKVNVLSENEGAIEAL 207 (350)
Q Consensus 144 s~~~e~k~~i~~~~~l~~Lv~~L--------~~gs~~~r~--------~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~L 207 (350)
+.++++|..|.+ |+++.|+.+| ++++.+.|+ +|+.+|.+|+.. ++++..|.+..|+++.|
T Consensus 115 a~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~---~~~~~~i~~~~g~i~~L 190 (457)
T 1xm9_A 115 SSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA---DAGRQTMRNYSGLIDSL 190 (457)
T ss_dssp HTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS---HHHHHHHTTSTTHHHHH
T ss_pred hcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC---HHHHHHHHHcCCCHHHH
Confidence 877888887778 9999999999 333444444 999999999965 47888885534999999
Q ss_pred HHHhcCC-----CChHHHHHHHHHHHHhhh--------------------------------------------------
Q 046820 208 FKLIEEP-----ISPTATKAALVVIYHTIA-------------------------------------------------- 232 (350)
Q Consensus 208 V~lL~~~-----~~~~a~k~Al~aL~~L~~-------------------------------------------------- 232 (350)
+.+|+++ .+.+.+..|+.+|.||+.
T Consensus 191 v~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (457)
T 1xm9_A 191 MAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEE 270 (457)
T ss_dssp HHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCC
T ss_pred HHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccc
Confidence 9999852 234567777777777641
Q ss_pred -----------------------------hHHHHHHHHHHHhCCHh-----hHHHhhcCCCChHHHHHHHhccChhHHHH
Q 046820 233 -----------------------------SSASALSVLDGICSTDC-----GRENANDKPLTMPVVVKKILRVSELATEL 278 (350)
Q Consensus 233 -----------------------------~~e~aL~vL~~L~~~~e-----Gr~ai~~~~~~v~~lv~~l~~~S~~~~E~ 278 (350)
..|.|+.+|.+||.... -...+....+++|.|++++..++...+..
T Consensus 271 ~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~ 350 (457)
T 1xm9_A 271 TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRS 350 (457)
T ss_dssp SSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHH
T ss_pred cCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHH
Confidence 01457899999987531 11234457899999999998888888888
Q ss_pred HHHHHHHHccccccc------------------------------------------hHHHHHHHHhhchHHHHHHHHHh
Q 046820 279 SVSILWKLCMNEKRE------------------------------------------EKTAFVEALQVGAFQKLLVLLQV 316 (350)
Q Consensus 279 Av~iL~~Lc~~~~~~------------------------------------------~~~~~~~~~~~G~v~~LL~llq~ 316 (350)
|+.+|.+++...... +......+.+.|++++|..++.+
T Consensus 351 A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~ 430 (457)
T 1xm9_A 351 GASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRS 430 (457)
T ss_dssp HHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcC
Confidence 888888876543110 01223334467888888876665
Q ss_pred cCchHHHHHHHHHHHHHH
Q 046820 317 GCAERTKEKASEVLKLMN 334 (350)
Q Consensus 317 ~~t~~ak~kA~~LLk~l~ 334 (350)
+-+++++++|..+|..+.
T Consensus 431 ~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 431 SASPKAAEAARLLLSDMW 448 (457)
T ss_dssp TTCHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 436888888888776443
No 12
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.78 E-value=3.5e-18 Score=166.32 Aligned_cols=201 Identities=11% Similarity=0.058 Sum_probs=170.9
Q ss_pred hhHHHHHHHHHHHHHhcCccccchhhc-cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCC--hhhHhhcccC
Q 046820 80 QVGCKDLVAKIKEWAKESESNKSCIVD-NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLE--GEALTHLGSA 156 (350)
Q Consensus 80 ~~~~~~Al~~L~~Lak~s~~nR~~i~~-aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~--~e~k~~i~~~ 156 (350)
+..+..|+..|.+|++.++.+|..|.. .|+||.|+.+|. .+ +.+++++|..+|. ||+.. +++|..|.+.
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~---s~----~~~v~~~A~~aL~-nLs~~~~~~~k~~i~~~ 169 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK---SE----SEDLQQVIASVLR-NLSWRADVNSKKTLREV 169 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG---CS----CHHHHHHHHHHHH-HHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC---CC----CHHHHHHHHHHHH-HHhccCCHHHHHHHHHC
Confidence 456788999999999998889999864 588999999996 22 3779999999999 89864 5789999899
Q ss_pred CcHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh---HHHHHHHHHHHHhhh
Q 046820 157 SSMGCMIWFL-NSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP---TATKAALVVIYHTIA 232 (350)
Q Consensus 157 ~~l~~Lv~~L-~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~---~a~k~Al~aL~~L~~ 232 (350)
|+++.|+.+| ++++.+.+++|+.+|.+|+... ++++..|....|+|+.||++|+++.+. ..++.|..+|.||+.
T Consensus 170 G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~--~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~ 247 (354)
T 3nmw_A 170 GSVKALMECALEVKKESTLKSVLSALWNLSAHC--TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247 (354)
T ss_dssp THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC--hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHh
Confidence 9999999975 6678999999999999999743 377888864589999999999876332 478899999999984
Q ss_pred ----hH---------------------------HHHHHHHHHHh-CCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHH
Q 046820 233 ----SS---------------------------ASALSVLDGIC-STDCGRENANDKPLTMPVVVKKILRVSELATELSV 280 (350)
Q Consensus 233 ----~~---------------------------e~aL~vL~~L~-~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av 280 (350)
.. +.|+.+|.+|+ ..++.+..|. +.|+||+|++++...++..++.|+
T Consensus 248 ~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~-~~G~i~~Lv~LL~s~~~~i~~~A~ 326 (354)
T 3nmw_A 248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW-DMGAVSMLKNLIHSKHKMIAMGSA 326 (354)
T ss_dssp HHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH-HTTHHHHHHTTTTCSSHHHHHHHH
T ss_pred hccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHH
Confidence 21 47999999999 5789999985 789999999988888899999999
Q ss_pred HHHHHHccccc
Q 046820 281 SILWKLCMNEK 291 (350)
Q Consensus 281 ~iL~~Lc~~~~ 291 (350)
.+|++|+.+.+
T Consensus 327 ~aL~nL~~~~~ 337 (354)
T 3nmw_A 327 AALRNLMANRP 337 (354)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCH
Confidence 99999999764
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.77 E-value=7.1e-17 Score=162.66 Aligned_cols=257 Identities=12% Similarity=0.074 Sum_probs=213.5
Q ss_pred cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCc-cccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHH
Q 046820 61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESE-SNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTL 139 (350)
Q Consensus 61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~-~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L 139 (350)
...+..++..+.+ ++++.+..|+..|+.++.... .++..+.+.|++|.|+.+|. .+ .+..+++.|+.+|
T Consensus 73 ~~~l~~lv~~L~s----~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~---~~---~~~~v~~~A~~~L 142 (528)
T 4b8j_A 73 LESLPAMIGGVYS----DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT---RE---DFPQLQFEAAWAL 142 (528)
T ss_dssp --CHHHHHHHHTS----SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT---CT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC---CC---CCHHHHHHHHHHH
Confidence 3457788888865 467888999999999977654 67888999999999999996 22 1267899999999
Q ss_pred HhhCCCC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChH
Q 046820 140 ILLFPLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPT 218 (350)
Q Consensus 140 ~~~Ls~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~ 218 (350)
. ++..+ ++++..+...|+++.|+.+|.+++.+.|.+|+.+|.+|+... +.++..+.. .|+++.|+.+|.+..++.
T Consensus 143 ~-~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~--~~~~~~i~~-~g~l~~Ll~lL~~~~~~~ 218 (528)
T 4b8j_A 143 T-NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS--PKCRDLVLA-NGALLPLLAQLNEHTKLS 218 (528)
T ss_dssp H-HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC--HHHHHHHHH-TTCHHHHHHTCCTTCCHH
T ss_pred H-HHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC--hhhHHHHHH-CCcHHHHHHHHhcCCCHH
Confidence 9 77654 578888888899999999999999999999999999999764 467777745 799999999997666788
Q ss_pred HHHHHHHHHHHhhhh---------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc
Q 046820 219 ATKAALVVIYHTIAS---------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV 271 (350)
Q Consensus 219 a~k~Al~aL~~L~~~---------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~ 271 (350)
....|..+|.+|+.. ...++.+|.+|+...+.+.....+.++++.++..|...
T Consensus 219 v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~ 298 (528)
T 4b8j_A 219 MLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP 298 (528)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC
Confidence 999999999999753 14789999999987766655555789999999999888
Q ss_pred ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 272 SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 272 S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
++..++.|+.+|.++|... +...+.+++.|+++.|+.+|+.+..+..++.|...|..+..
T Consensus 299 ~~~v~~~a~~~L~nl~~~~----~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 299 SPSVLIPALRTVGNIVTGD----DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp CHHHHHHHHHHHHHHTTSC----HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHcCC----HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 8899999999999999854 45677788999999999999866478999999999888864
No 14
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.7e-17 Score=166.66 Aligned_cols=250 Identities=14% Similarity=0.094 Sum_probs=199.5
Q ss_pred CChhHHHHHHHHHHHHHhcCccccchhhccCch----------HHHHHHHHhccccccccc-hHHHH-------HHHHHH
Q 046820 78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAV----------SVLAAAFESFSKTCLDEN-VSVLE-------EILSTL 139 (350)
Q Consensus 78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai----------~~Lv~lL~~~~~~~~~~~-~~~~e-------~Al~~L 139 (350)
++++.+.+|+..|.+++...+.......+.|++ +.++.++.+...++ +.+ ..+.| +|+.+|
T Consensus 94 ~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~qAv~aL 172 (458)
T 3nmz_A 94 GSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM-DQDKNPMPAPVEHQICPAVCVL 172 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSS-CCCSCC--CCCTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc-ccccCCccchhhHHHHHHHHHH
Confidence 567889999999999999998888888888888 56666665211010 100 01444 899999
Q ss_pred HhhCCCChhhHhhcccCCcHHHHHHHHcc-----------CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHH
Q 046820 140 ILLFPLEGEALTHLGSASSMGCMIWFLNS-----------GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALF 208 (350)
Q Consensus 140 ~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~-----------gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV 208 (350)
. |++.++++|..|.+.|+++.|+.+|.. .+...+.+|+.+|.+|+... +.++..|....|+||.||
T Consensus 173 ~-nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~--~~~k~~i~~~~GaIp~LV 249 (458)
T 3nmz_A 173 M-KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD--VANKATLCSMKGCMRALV 249 (458)
T ss_dssp H-HHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHCHHHHHHHH
T ss_pred H-HhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC--cccHHHHHHcCCcHHHHH
Confidence 9 999888999999999999999999952 23667999999999999764 367777744478999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhhh----H--------------------------HHHHHHHHHHhC-CHhhHHHhhcC
Q 046820 209 KLIEEPISPTATKAALVVIYHTIAS----S--------------------------ASALSVLDGICS-TDCGRENANDK 257 (350)
Q Consensus 209 ~lL~~~~~~~a~k~Al~aL~~L~~~----~--------------------------e~aL~vL~~L~~-~~eGr~ai~~~ 257 (350)
++|+++ ++.....|..+|.||+.. + +.++.+|.+|+. +++.+..|...
T Consensus 250 ~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~ 328 (458)
T 3nmz_A 250 AQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 328 (458)
T ss_dssp HGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHS
T ss_pred HHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHh
Confidence 999976 678889999999999641 1 478899999999 88999999778
Q ss_pred CCChHHHHHHHhccChh----HHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 046820 258 PLTMPVVVKKILRVSEL----ATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLM 333 (350)
Q Consensus 258 ~~~v~~lv~~l~~~S~~----~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l 333 (350)
.|+||+|+++|...++. .++.|+.+|++|+.+-. ++++.++.+.+.|+++.|+.+|..+ +...++.|...|..+
T Consensus 329 ~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a-~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 329 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA-TNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNL 406 (458)
T ss_dssp TTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHH
Confidence 99999999999877653 78999999999996300 1145778888999999999998865 788999999999888
Q ss_pred H
Q 046820 334 N 334 (350)
Q Consensus 334 ~ 334 (350)
.
T Consensus 407 a 407 (458)
T 3nmz_A 407 S 407 (458)
T ss_dssp H
T ss_pred H
Confidence 7
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.76 E-value=7.5e-17 Score=163.70 Aligned_cols=256 Identities=12% Similarity=0.092 Sum_probs=206.9
Q ss_pred cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHH-hcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHH
Q 046820 61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWA-KESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTL 139 (350)
Q Consensus 61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~La-k~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L 139 (350)
...+..+++.+.+ .|++.+..|+..+|.+. ++.......+.+.|+||.|+.+|.. .+ ++.++.+|..+|
T Consensus 75 ~~~l~~lv~~l~s----~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~--~~----~~~~q~~Aa~aL 144 (529)
T 3tpo_A 75 NWSVEDIVKGINS----NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TD----CSPIQFESAWAL 144 (529)
T ss_dssp SCCHHHHHHHHTS----SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC--TT----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC--CC----CHHHHHHHHHHH
Confidence 3467888888876 47889999999999765 4443445678899999999999962 22 477899999999
Q ss_pred HhhCCCC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCC--
Q 046820 140 ILLFPLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPIS-- 216 (350)
Q Consensus 140 ~~~Ls~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~-- 216 (350)
. |++.. ++++..+.+.|+++.|+.+|.+++.+.+++|+.+|.+|+.+. +.++..+-. .|+++.|+.+|.++..
T Consensus 145 ~-nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~--~~~r~~i~~-~g~i~~Ll~lL~~~~~~~ 220 (529)
T 3tpo_A 145 T-NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG--SAFRDLVIK-HGAIDPLLALLAVPDLST 220 (529)
T ss_dssp H-HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTCHHHHHHTTCSSCGGG
T ss_pred H-HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC--HHHHHHHHH-cCCcHHHHHHHhccchhH
Confidence 9 78644 477788889999999999999999999999999999999764 578888755 8999999999986522
Q ss_pred --hHHHHHHHHHHHHhhhhH----------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHH
Q 046820 217 --PTATKAALVVIYHTIASS----------------------------ASALSVLDGICSTDCGRENANDKPLTMPVVVK 266 (350)
Q Consensus 217 --~~a~k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~ 266 (350)
....+.+..+|.+++... ..++.+|..|+...+.+..+....|++|.|++
T Consensus 221 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~ 300 (529)
T 3tpo_A 221 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 300 (529)
T ss_dssp SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHH
Confidence 235667888888886421 36888889998876666666668999999999
Q ss_pred HHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 267 KILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 267 ~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
.+...+...++.|+.+|++++..+ +.....++..|+++.|..+|.+. .+..|+.|...|..+..
T Consensus 301 lL~~~~~~v~~~a~~aL~nl~~~~----~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~ 364 (529)
T 3tpo_A 301 LLGATELPIVTPALRAIGNIVTGT----DEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA 364 (529)
T ss_dssp HHTCSCHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHT
T ss_pred HhcCCChhHHHHHHHHHHHHHccc----hHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhc
Confidence 998888899999999999999854 45777788999999999888754 68889999888887754
No 16
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.74 E-value=7.3e-17 Score=163.30 Aligned_cols=251 Identities=11% Similarity=0.088 Sum_probs=201.7
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
|..||+-|+.. .++..|.+|+..|.+++..+++++..++++|+||.|+.+|. ++ +.++++.|+.+|. |+
T Consensus 102 ip~LV~lL~~~---~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~---s~----~~~v~e~A~~aL~-nL 170 (510)
T 3ul1_B 102 IPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA---SP----HAHISEQAVWALG-NI 170 (510)
T ss_dssp HHHHHHHTTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CS----CHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HH
Confidence 45566666543 34677889999999999999999999999999999999996 22 4789999999999 88
Q ss_pred CCC-hhhHhhcccCCcHHHHHHHHccCC-----HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh
Q 046820 144 PLE-GEALTHLGSASSMGCMIWFLNSGD-----LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP 217 (350)
Q Consensus 144 s~~-~e~k~~i~~~~~l~~Lv~~L~~gs-----~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~ 217 (350)
+.+ ++.+..+.+.|+++.|+.+|.+.+ .....+++.+|.+++.... ... .+....|+++.|++++.++ ++
T Consensus 171 a~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~--~~~-~~~~~~~~lp~L~~LL~~~-~~ 246 (510)
T 3ul1_B 171 AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN--PAP-PLDAVEQILPTLVRLLHHN-DP 246 (510)
T ss_dssp HTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCS--SCC-CHHHHHHHHHHHHHHTTCS-CH
T ss_pred HhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhccc--chh-HHHHHHhHHHHHHHHHhcC-CH
Confidence 765 477888889999999999998753 4567789999999986542 222 2223479999999999876 67
Q ss_pred HHHHHHHHHHHHhhhhH----------------------------HHHHHHHHHHhCCH-hhHHHhhcCCCChHHHHHHH
Q 046820 218 TATKAALVVIYHTIASS----------------------------ASALSVLDGICSTD-CGRENANDKPLTMPVVVKKI 268 (350)
Q Consensus 218 ~a~k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~~~-eGr~ai~~~~~~v~~lv~~l 268 (350)
.....|..+|.+|+... ..++.+|.+|++.. +.+..+ ...++++.++.++
T Consensus 247 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i-~~~g~l~~L~~LL 325 (510)
T 3ul1_B 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV-IDAGALAVFPSLL 325 (510)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTGGGGCC-CT
T ss_pred HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHH-hhccchHHHHHHh
Confidence 88899999999997421 37899999998754 445555 4789999999988
Q ss_pred hccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 269 LRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 269 ~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
...++..++.|+.+|.+|+..+ ......+.+.|+++.|+.+++.+ ....|+.|...|..+..
T Consensus 326 ~~~~~~v~~~A~~aL~nl~a~~----~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 326 TNPKTNIQKEATWTMSNITAGR----QDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTS 387 (510)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCc----HHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 7778889999999999999865 34677777999999999998865 78999999988887754
No 17
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.74 E-value=1.8e-16 Score=168.52 Aligned_cols=236 Identities=14% Similarity=0.116 Sum_probs=193.7
Q ss_pred ChhHHHHHHHHHHHHHhcCccccchhh-ccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChh---------
Q 046820 79 DQVGCKDLVAKIKEWAKESESNKSCIV-DNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGE--------- 148 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~-~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e--------- 148 (350)
|.+.+..|+..|..|+... .+|..++ +.|++|.|+.+|++ + +..++..|+.+|. |+..+.+
T Consensus 392 d~~v~~~AveaLayLS~~~-~vk~~lv~d~g~Ip~LV~LL~s---~----d~~i~~~al~~L~-NLt~~~d~q~~~~~l~ 462 (810)
T 3now_A 392 DKDIRRWAADGLAYLTLDA-ECKEKLIEDKASIHALMDLARG---G----NQSCLYGVVTTFV-NLCNAYEKQEMLPEMI 462 (810)
T ss_dssp CSSHHHHHHHHHHHHTTSH-HHHHHHHHCHHHHHHHHHHHHT---T----CGGGHHHHHHHHH-HHTTCSCCCCCCCSCG
T ss_pred CHHHHHHHHHHHHHHhCCc-HHHHHHHHccchHHHHHHHhCC---C----ChHHHHHHHHHHH-HHcCCchhhhhhHHHH
Confidence 5677888999999999765 5555555 67999999999972 2 3568999999999 8975321
Q ss_pred ---------------------hH---hhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHH
Q 046820 149 ---------------------AL---THLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAI 204 (350)
Q Consensus 149 ---------------------~k---~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i 204 (350)
.+ +.+.+.|+++.|+.+|++++.+.|++|+.+|.+|+.+ ++++..|.. .|++
T Consensus 463 ~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d---~~~r~~Vv~-~Gai 538 (810)
T 3now_A 463 ELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL---KELRGKVVQ-EGGV 538 (810)
T ss_dssp GGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS---HHHHHHHHH-TTHH
T ss_pred HHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHH-CCCH
Confidence 22 4566789999999999999999999999999999954 478888866 8999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhhhH-------------------------------HHHHHHHHHHhCC-HhhHH
Q 046820 205 EALFKLIEEPISPTATKAALVVIYHTIASS-------------------------------ASALSVLDGICST-DCGRE 252 (350)
Q Consensus 205 ~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~-------------------------------e~aL~vL~~L~~~-~eGr~ 252 (350)
++|+.+|+++ ++..++.|..+|.+|+.+. ..|+.+|.+|++. ++.+.
T Consensus 539 p~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 539 KALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp HHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999987 6788999999999986320 2588999999997 56677
Q ss_pred HhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHh-hchHHHHHHHHHhcCchHHHHHHHHHHH
Q 046820 253 NANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQ-VGAFQKLLVLLQVGCAERTKEKASEVLK 331 (350)
Q Consensus 253 ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~-~G~v~~LL~llq~~~t~~ak~kA~~LLk 331 (350)
.|. .+|++|.++..+...++..++.|+.+|.+|+... ..+...+. .|+++.|+.+++++ ....|+.|...|.
T Consensus 618 ~Ii-~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-----~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALa 690 (810)
T 3now_A 618 RII-KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-----DVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALA 690 (810)
T ss_dssp HHH-HTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-----HHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHH
T ss_pred HHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-----HHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 775 5789999999999888899999999999999842 35555554 68999888888865 6789999999999
Q ss_pred HHHh
Q 046820 332 LMNL 335 (350)
Q Consensus 332 ~l~~ 335 (350)
.+..
T Consensus 691 nLt~ 694 (810)
T 3now_A 691 IITS 694 (810)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8876
No 18
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.73 E-value=2.5e-16 Score=159.85 Aligned_cols=251 Identities=12% Similarity=0.090 Sum_probs=202.6
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
|..||+-|... .++..+.+|+..|.+++..++.++..++++|+||.|+.+|. ++ +..+++.|+.+|. |+
T Consensus 121 ip~Lv~lL~~~---~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~---s~----~~~v~e~A~~aL~-nL 189 (529)
T 3tpo_A 121 IPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA---SP----HAHISEQAVWALG-NI 189 (529)
T ss_dssp HHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CS----CHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HH
Confidence 44566666543 24678889999999999999999999999999999999996 22 4779999999999 88
Q ss_pred CCC-hhhHhhcccCCcHHHHHHHHccCC-----HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh
Q 046820 144 PLE-GEALTHLGSASSMGCMIWFLNSGD-----LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP 217 (350)
Q Consensus 144 s~~-~e~k~~i~~~~~l~~Lv~~L~~gs-----~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~ 217 (350)
+.+ ++++..+.+.|+++.|+.+|...+ .....+++.+|.+++.... ... .+....|+++.|+++|.++ ++
T Consensus 190 a~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~--~~~-~~~~~~~~lp~L~~LL~~~-~~ 265 (529)
T 3tpo_A 190 AGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN--PAP-PLDAVEQILPTLVRLLHHN-DP 265 (529)
T ss_dssp HTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCT--TCC-CHHHHHHHHHHHHHHTTSS-CH
T ss_pred hccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhccc--chh-hHHHHhhHHHHHHHHhcCC-cH
Confidence 755 478888889999999999998653 4567889999999986542 222 2223479999999999876 77
Q ss_pred HHHHHHHHHHHHhhhhH----------------------------HHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHH
Q 046820 218 TATKAALVVIYHTIASS----------------------------ASALSVLDGICST-DCGRENANDKPLTMPVVVKKI 268 (350)
Q Consensus 218 ~a~k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l 268 (350)
....+|..+|.+++... ..++.+|.+|+.. ++.+..+. ..|+++.++.++
T Consensus 266 ~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL 344 (529)
T 3tpo_A 266 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLL 344 (529)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGHHHHT
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHh-hcccHHHHHHHH
Confidence 88899999999997421 3789999999875 55555664 789999999988
Q ss_pred hccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 269 LRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 269 ~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
...++..++.|+.+|.+||..+ ......+.+.|+++.|+.+++.+ ....|+.|...|..+..
T Consensus 345 ~~~~~~i~~~a~~aL~nl~~~~----~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 345 TNPKTNIQKEATWTMSNITAGR----QDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTS 406 (529)
T ss_dssp TCSSHHHHHHHHHHHHHHHTSC----HHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhccc----HHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHc
Confidence 8788888999999999999864 34677777999999999999866 68899999988877754
No 19
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.71 E-value=4.3e-16 Score=137.68 Aligned_cols=198 Identities=16% Similarity=0.217 Sum_probs=160.3
Q ss_pred cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC-CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 046820 107 NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP-LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELV 185 (350)
Q Consensus 107 aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls 185 (350)
.|..|.|+.+|. ++ +.+++++|+.+|. +++ -+++++..+.+.|+++.|+.+|++++.+.+..|+.+|.+|+
T Consensus 11 ~~~~~~l~~LL~---s~----~~~v~~~a~~~L~-~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 11 GSELPQMVQQLN---SP----DQQELQSALRKLS-QIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82 (210)
T ss_dssp --CHHHHHHHTT---CS----CHHHHHHHHHHHH-HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHhc---CC----CHHHHHHHHHHHH-HHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 478999999996 22 4778999999999 776 45577888888899999999999999999999999999998
Q ss_pred cCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHH
Q 046820 186 SSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVV 265 (350)
Q Consensus 186 ~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv 265 (350)
... +.++..+.. .|+++.|+.+|+++ ++...+.|..+|.|++. ..++.+..+. +.++++.++
T Consensus 83 ~~~--~~~~~~i~~-~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~-------------~~~~~~~~~~-~~~~i~~L~ 144 (210)
T 4db6_A 83 SGG--NEQIQAVID-AGALPALVQLLSSP-NEQILQEALWALSNIAS-------------GGNEQIQAVI-DAGALPALV 144 (210)
T ss_dssp TSC--HHHHHHHHH-TTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTT-------------SCHHHHHHHH-HTTHHHHHH
T ss_pred cCC--cHHHHHHHH-CCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHc-------------CCHHHHHHHH-HcCcHHHHH
Confidence 654 467777755 89999999999877 56666666666655553 2344555564 678999999
Q ss_pred HHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 266 KKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 266 ~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
+.+...++..+++|+.+|+++|..+ +.....+.+.|+++.|+.+++. .++..|++|...|..|..
T Consensus 145 ~ll~~~~~~v~~~a~~aL~~l~~~~----~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 145 QLLSSPNEQILQEALWALSNIASGG----NEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTSC----HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCC----cHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHhc
Confidence 9998888999999999999999864 3466778899999999988885 478999999999988753
No 20
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.71 E-value=8e-16 Score=135.95 Aligned_cols=193 Identities=16% Similarity=0.232 Sum_probs=158.2
Q ss_pred HHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCC
Q 046820 66 EINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPL 145 (350)
Q Consensus 66 ~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~ 145 (350)
.++.-+.+ .|++.+..|+..|..++..++.++..+.+.|++|.|+.+|. ++ +..+++.|+.+|. +++.
T Consensus 16 ~l~~LL~s----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~---~~----~~~v~~~a~~~L~-~l~~ 83 (210)
T 4db6_A 16 QMVQQLNS----PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS---SP----NEQILQEALWALS-NIAS 83 (210)
T ss_dssp HHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CS----CHHHHHHHHHHHH-HHTT
T ss_pred HHHHHhcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HHhc
Confidence 44444444 46788889999999999999999999999999999999996 22 4778999999999 7874
Q ss_pred -ChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHH
Q 046820 146 -EGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAAL 224 (350)
Q Consensus 146 -~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al 224 (350)
+++++..+.+.|.++.|+.+|++++...|.+|+.+|.+|+... +..+..+.. .|+++.|+++++++ ++...+.|+
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~a~ 159 (210)
T 4db6_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVID-AGALPALVQLLSSP-NEQILQEAL 159 (210)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHH
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHHHHHHH-cCcHHHHHHHHcCC-CHHHHHHHH
Confidence 4577888888999999999999999999999999999999654 355555545 79999999999976 666666666
Q ss_pred HHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcc
Q 046820 225 VVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCM 288 (350)
Q Consensus 225 ~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~ 288 (350)
.+|.+++.. .++.+..+. ..|+++.|++.+...++..++.|..+|.++|.
T Consensus 160 ~aL~~l~~~-------------~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 160 WALSNIASG-------------GNEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHTS-------------CHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcC-------------CcHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 666666532 155666664 67899999998888889999999999999986
No 21
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=146.83 Aligned_cols=197 Identities=11% Similarity=0.078 Sum_probs=153.9
Q ss_pred chHHHHHHHHhccccccccchHHHHHHHHHHHhhCCC-ChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcC
Q 046820 109 AVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPL-EGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSS 187 (350)
Q Consensus 109 ai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~-~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~ 187 (350)
.+|.|+.+|.+ ++ ...+++..|...|. +|.. ++++|..|.+.|+|+.||.+|++++.+.+++|+.+|.+|+..
T Consensus 9 ~i~~lV~lL~s--~~---~~~~~q~~Aa~~l~-~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 9 TLERAVSMLEA--DH---MLPSRISAAATFIQ-HECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp CHHHHHHTCCS--SC---CCHHHHHHHHHHHH-HHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHhCC--CC---chHHHHHHHHHHHH-HHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 58999999962 21 12367888888888 7774 457888888899999999999999999999999999999975
Q ss_pred CCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHH
Q 046820 188 DSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKK 267 (350)
Q Consensus 188 ~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~ 267 (350)
+ ++++..|.+ .|+||.||++|++..+....+.|..+|+| |+.+++.|..|.. ++||+|++.
T Consensus 83 ~--~~nk~~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~n--------------LS~~~~~k~~i~~--~~i~~Lv~l 143 (233)
T 3tt9_A 83 D--NDNKLEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWN--------------LSSNDKLKNLMIT--EALLTLTEN 143 (233)
T ss_dssp C--HHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------HHTSGGGHHHHHH--HHHHHHCCC
T ss_pred C--HHHHHHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHH--------------HHcChhhHHHHHh--ccHHHHHHH
Confidence 4 489999977 89999999999854355555555555554 4567788888874 479999986
Q ss_pred Hh---cc-------------ChhHHHHHHHHHHHHccccccchHHHHHHHHhh-chHHHHHHHHHhc-----CchHHHHH
Q 046820 268 IL---RV-------------SELATELSVSILWKLCMNEKREEKTAFVEALQV-GAFQKLLVLLQVG-----CAERTKEK 325 (350)
Q Consensus 268 l~---~~-------------S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~-G~v~~LL~llq~~-----~t~~ak~k 325 (350)
+. .+ .....++|+++|.+|+..+ ++.++.|.+. |.|+.|+.+++.. ..++.++.
T Consensus 144 l~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~----~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En 219 (233)
T 3tt9_A 144 IIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG----ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATEN 219 (233)
T ss_dssp CCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSC----HHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HhccccCCcccccccccccchHHHHHHHHHHHHHHhcCC----HHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHH
Confidence 53 12 2367899999999999853 4577788754 7899999999853 25688999
Q ss_pred HHHHHHHHH
Q 046820 326 ASEVLKLMN 334 (350)
Q Consensus 326 A~~LLk~l~ 334 (350)
|...|+.|.
T Consensus 220 ~v~~L~nLs 228 (233)
T 3tt9_A 220 CVCILHNLS 228 (233)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998875
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.69 E-value=3e-15 Score=150.71 Aligned_cols=251 Identities=14% Similarity=0.106 Sum_probs=204.9
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
+..++.-+.+. .++..+..|+..|..++..++.++..+.+.|++|.|+.+|. ++ +..+++.|+.+|. ++
T Consensus 119 v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~---~~----~~~v~~~a~~aL~-~l 187 (528)
T 4b8j_A 119 VPRFVQFLTRE---DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG---SS----SDDVREQAVWALG-NV 187 (528)
T ss_dssp HHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CS----CHHHHHHHHHHHH-HH
T ss_pred HHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc---CC----CHHHHHHHHHHHH-HH
Confidence 45566666542 12677889999999999998999999999999999999996 22 4779999999999 77
Q ss_pred CCC-hhhHhhcccCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820 144 PLE-GEALTHLGSASSMGCMIWFL-NSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK 221 (350)
Q Consensus 144 s~~-~e~k~~i~~~~~l~~Lv~~L-~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k 221 (350)
..+ ++++..+...|+++.|+.+| .+.+...+.+|+.+|.+|+...+ .....+ ..|+++.|+.+|.++ ++....
T Consensus 188 ~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~--~~~~~~--~~~~l~~L~~lL~~~-~~~v~~ 262 (528)
T 4b8j_A 188 AGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP--QPSFEQ--TRPALPALARLIHSN-DEEVLT 262 (528)
T ss_dssp HHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS--CCCHHH--HTTHHHHHHHHTTCC-CHHHHH
T ss_pred hCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC--CCcHHH--HHHHHHHHHHHHCCC-CHHHHH
Confidence 644 46777887889999999999 55689999999999999997632 222222 379999999999876 778889
Q ss_pred HHHHHHHHhhhh----------------------------HHHHHHHHHHHhC-CHhhHHHhhcCCCChHHHHHHHhcc-
Q 046820 222 AALVVIYHTIAS----------------------------SASALSVLDGICS-TDCGRENANDKPLTMPVVVKKILRV- 271 (350)
Q Consensus 222 ~Al~aL~~L~~~----------------------------~e~aL~vL~~L~~-~~eGr~ai~~~~~~v~~lv~~l~~~- 271 (350)
.|+.+|.+|+.. .+.|+.+|.+|+. .++....+. +.+++|.|+..|...
T Consensus 263 ~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~ 341 (528)
T 4b8j_A 263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCII-DHQALPCLLSLLTQNL 341 (528)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHH-HhhhHHHHHHHHcCCC
Confidence 999999999742 1489999999998 466666665 789999999999888
Q ss_pred ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820 272 SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336 (350)
Q Consensus 272 S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~ 336 (350)
++..++.|+.+|.+++..+ ......++..|+++.|+.+|+.+ .+..|+.|...|..+...
T Consensus 342 ~~~v~~~A~~~L~nl~~~~----~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 342 KKSIKKEACWTISNITAGN----KDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSC----HHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCC----HHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 7888999999999999843 45677778899999999999876 789999999999888764
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.69 E-value=5e-15 Score=147.82 Aligned_cols=252 Identities=14% Similarity=0.122 Sum_probs=194.0
Q ss_pred hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhc-cCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820 63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVD-NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL 141 (350)
Q Consensus 63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~-aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~ 141 (350)
-+..++.-+++ +++..+..|+..|..++..+ .+|..+.. .|+++.|+.+|.+ .. +.+++..|+.+|.
T Consensus 18 ~i~~Lv~lL~~----~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~--~~----~~~~~~~a~~~L~- 85 (529)
T 1jdh_A 18 AIPELTKLLND----EDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQN--TN----DVETARCTAGTLH- 85 (529)
T ss_dssp HHHHHHHHHTC----SCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHH--CC----CHHHHHHHHHHHH-
T ss_pred hHHHHHHHhCC----CCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhc--CC----CHHHHHHHHHHHH-
Confidence 35566666654 46788889999999999765 46655554 5999999999962 21 3678999999999
Q ss_pred hCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820 142 LFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK 221 (350)
Q Consensus 142 ~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k 221 (350)
+|+.+++++..+.+.|.++.|+.+|++++.+.+.+|+.+|.+|+...+ ..+..+.. .|+++.|+++++++ +++...
T Consensus 86 ~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~-~g~i~~L~~ll~~~-~~~~~~ 161 (529)
T 1jdh_A 86 NLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE--GAKMAVRL-AGGLQKMVALLNKT-NVKFLA 161 (529)
T ss_dssp HHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT--THHHHHHH-HTHHHHHHHGGGCC-CHHHHH
T ss_pred HHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc--chHHHHHH-cCCHHHHHHHHhcC-CHHHHH
Confidence 788788888888888999999999999999999999999999987643 56666645 79999999999976 666777
Q ss_pred HHHHHHHHhhhhH-----------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHh---
Q 046820 222 AALVVIYHTIASS-----------------------------ASALSVLDGICSTDCGRENANDKPLTMPVVVKKIL--- 269 (350)
Q Consensus 222 ~Al~aL~~L~~~~-----------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~--- 269 (350)
.+..+|.+++..+ +.+..+|.+|+.+++.+..+. ..++++.+++.+.
T Consensus 162 ~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~g~~~~L~~ll~~~~ 240 (529)
T 1jdh_A 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGLHLTDPS 240 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHH-HTTHHHHHHTTTTSSC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHH-HCCCHHHHHHHHhCCC
Confidence 7778888876421 246788889999988888876 4566666554443
Q ss_pred ------------------------------------ccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHH
Q 046820 270 ------------------------------------RVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVL 313 (350)
Q Consensus 270 ------------------------------------~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~l 313 (350)
..++..++.|+.+|+++|..+ .+....+.+.|+++.|+.+
T Consensus 241 ~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~----~~~~~~~~~~~~v~~L~~l 316 (529)
T 1jdh_A 241 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRT 316 (529)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC----HHHHHHHHHTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC----HHHHHHHHHcCChHHHHHH
Confidence 334556777777787777743 3466777799999999999
Q ss_pred HHhcC-chHHHHHHHHHHHHHHh
Q 046820 314 LQVGC-AERTKEKASEVLKLMNL 335 (350)
Q Consensus 314 lq~~~-t~~ak~kA~~LLk~l~~ 335 (350)
|.... .+..++.|...|..+..
T Consensus 317 l~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 317 VLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHccCCHHHHHHHHHHHHHHHHc
Confidence 98643 37889998888887753
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.68 E-value=7.4e-15 Score=152.20 Aligned_cols=252 Identities=14% Similarity=0.126 Sum_probs=195.9
Q ss_pred hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhcc-CchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820 63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDN-AAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL 141 (350)
Q Consensus 63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~a-Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~ 141 (350)
.+..++.-+++ +++..+..|+..|..++.++ .+|..+... |+++.|+.+|.+ .. +.+++..|+.+|.
T Consensus 15 ~i~~Lv~lL~~----~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~--~~----~~~~~~~A~~~L~- 82 (644)
T 2z6h_A 15 AIPELTKLLND----EDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQN--TN----DVETARCTAGTLH- 82 (644)
T ss_dssp THHHHHHHHTC----SCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHS--CC----CHHHHHHHHHHHH-
T ss_pred hHHHHHHHHcC----CCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhc--CC----CHHHHHHHHHHHH-
Confidence 36667776664 46788889999999999876 477777655 999999999972 11 4678999999999
Q ss_pred hCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820 142 LFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK 221 (350)
Q Consensus 142 ~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k 221 (350)
+|+.+++++..+.+.|.++.|+.+|++++.+.+.+|+.+|.+|+...+ ..+..+.. .|+++.|+++|+++ +++...
T Consensus 83 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~--~~~~~v~~-~g~i~~Lv~lL~~~-~~~~~~ 158 (644)
T 2z6h_A 83 NLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE--GAKMAVRL-AGGLQKMVALLNKT-NVKFLA 158 (644)
T ss_dssp HHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHST--THHHHHHH-TTHHHHHHHGGGCC-CHHHHH
T ss_pred HHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc--hhHHHHHH-CCChHHHHHHHCcC-CHHHHH
Confidence 888888888888888999999999999999999999999999987642 55666644 79999999999977 667777
Q ss_pred HHHHHHHHhhhhH-----------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc-
Q 046820 222 AALVVIYHTIASS-----------------------------ASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV- 271 (350)
Q Consensus 222 ~Al~aL~~L~~~~-----------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~- 271 (350)
.++.+|.+++..+ +.++.+|.+|+.+++.|..+. ..++++.+++.+...
T Consensus 159 ~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~-~~g~l~~L~~ll~~~~ 237 (644)
T 2z6h_A 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGLHLTDPS 237 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHH-HTTHHHHHHTTTTCSC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHH-HCCCHHHHHHHHhcCC
Confidence 7788898887411 357889999999999999886 456777776655443
Q ss_pred --------------------------------------ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHH
Q 046820 272 --------------------------------------SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVL 313 (350)
Q Consensus 272 --------------------------------------S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~l 313 (350)
++..++.|+.+|++||..+ ......+.+.|+++.|+.+
T Consensus 238 ~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~----~~~~~~v~~~g~v~~Lv~l 313 (644)
T 2z6h_A 238 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRT 313 (644)
T ss_dssp HHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----HHHHHHHHHcCCHHHHHHH
Confidence 3444556666666665532 3456677789999999999
Q ss_pred HHhcCc-hHHHHHHHHHHHHHHh
Q 046820 314 LQVGCA-ERTKEKASEVLKLMNL 335 (350)
Q Consensus 314 lq~~~t-~~ak~kA~~LLk~l~~ 335 (350)
|+...+ +..+..|...|..|..
T Consensus 314 L~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 314 VLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHccCCcHHHHHHHHHHHHHHhc
Confidence 986543 6889998888888753
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.68 E-value=7.9e-15 Score=148.03 Aligned_cols=253 Identities=11% Similarity=0.121 Sum_probs=206.6
Q ss_pred chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhc-CccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820 62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKE-SESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI 140 (350)
Q Consensus 62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~-s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~ 140 (350)
..+..++..|.+ +++..+..|+..|+.+... +..++..+.+.|++|.|+.+|.+ +. +..++.+|+.+|.
T Consensus 87 ~~i~~lv~~L~s----~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~--~~----~~~v~~~A~~~L~ 156 (530)
T 1wa5_B 87 QELPQMTQQLNS----DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE--NQ----PEMLQLEAAWALT 156 (530)
T ss_dssp CCHHHHHHHHSC----SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST--TS----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCC--CC----CHHHHHHHHHHHH
Confidence 347777777765 4678888999999998654 35567788899999999999962 11 3678999999999
Q ss_pred hhCCCC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHH
Q 046820 141 LLFPLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTA 219 (350)
Q Consensus 141 ~~Ls~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a 219 (350)
++... ++.+..+...++++.|+.+|++++.+.|.+|+.+|.+|+... +.++..+.. .|+++.|+.++.+. ++..
T Consensus 157 -~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~--~~~~~~~~~-~~~l~~L~~ll~~~-~~~v 231 (530)
T 1wa5_B 157 -NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS--TDYRDYVLQ-CNAMEPILGLFNSN-KPSL 231 (530)
T ss_dssp -HHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTCHHHHHHGGGSC-CHHH
T ss_pred -HHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--ccchHHHHH-cCcHHHHHHHhccC-CHHH
Confidence 67643 467777778899999999999999999999999999999764 467777645 79999999999974 7788
Q ss_pred HHHHHHHHHHhhhhH----------------------------HHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhc
Q 046820 220 TKAALVVIYHTIASS----------------------------ASALSVLDGICST-DCGRENANDKPLTMPVVVKKILR 270 (350)
Q Consensus 220 ~k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~ 270 (350)
...|+.+|.+|+... ..++.+|.+|+.. ++....+. ..++++.|+..+..
T Consensus 232 ~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~Lv~lL~~ 310 (530)
T 1wa5_B 232 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVELLSH 310 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHH-hcCcHHHHHHHHCC
Confidence 899999999998320 3789999999975 55666664 67899999999987
Q ss_pred cChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 271 VSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 271 ~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
.++..++.|+.+|.++|... +...+.++..|+++.|+.+|+.+ .+..|+.|...|..+..
T Consensus 311 ~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 311 ESTLVQTPALRAVGNIVTGN----DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA 370 (530)
T ss_dssp SCHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHHHHcCC----HHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 88889999999999999854 34666677889999999988865 68899999988888764
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.66 E-value=2.3e-14 Score=139.88 Aligned_cols=251 Identities=14% Similarity=0.079 Sum_probs=198.7
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHh--cCccccchhhcc-CchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAK--ESESNKSCIVDN-AAVSVLAAAFESFSKTCLDENVSVLEEILSTLI 140 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak--~s~~nR~~i~~a-Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~ 140 (350)
+..+++.+.+ +++..+..|+..|+.+.. .++..+. +.+. |++|.|+.+|.+ + .+..++..|+.+|.
T Consensus 22 l~~l~~~l~s----~~~~~r~~A~~~L~~l~~~~~~~~~~~-~~~~~~~i~~L~~~L~~--~----~~~~v~~~a~~~L~ 90 (450)
T 2jdq_A 22 TSDMIEMIFS----KSPEQQLSATQKFRKLLSKEPNPPIDE-VISTPGVVARFVEFLKR--K----ENCTLQFESAWVLT 90 (450)
T ss_dssp CHHHHHHHHS----SCHHHHHHHHHHHHHHHHSSSSCCHHH-HHTSTTHHHHHHHHHTC--T----TCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC----CCHHHHHHHHHHHHHHhcCCCCCcHHH-HHHcCCcHHHHHHHHCC--C----CCHHHHHHHHHHHH
Confidence 5677777765 467788899999999765 3334444 4455 999999999962 2 13678999999998
Q ss_pred hhCCC-ChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHH
Q 046820 141 LLFPL-EGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTA 219 (350)
Q Consensus 141 ~~Ls~-~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a 219 (350)
++.. ++++...+...+.++.|+.+|++++.+.|+.|+.+|.+|+... +.++..+-. .|+++.|++++.+..++..
T Consensus 91 -~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~--~~~~~~~~~-~~~i~~L~~~l~~~~~~~v 166 (450)
T 2jdq_A 91 -NIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS--TMCRDYVLD-CNILPPLLQLFSKQNRLTM 166 (450)
T ss_dssp -HHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTCHHHHHHHTTSCCCHHH
T ss_pred -HHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC--HHHHHHHHH-CCCHHHHHHHhcCCCCHHH
Confidence 6654 3466666667899999999999999999999999999999764 366666644 7999999999997557888
Q ss_pred HHHHHHHHHHhhhh----------------------------HHHHHHHHHHHhCCH-hhHHHhhcCCCChHHHHHHHhc
Q 046820 220 TKAALVVIYHTIAS----------------------------SASALSVLDGICSTD-CGRENANDKPLTMPVVVKKILR 270 (350)
Q Consensus 220 ~k~Al~aL~~L~~~----------------------------~e~aL~vL~~L~~~~-eGr~ai~~~~~~v~~lv~~l~~ 270 (350)
.+.|+.+|.+++.. .+.++.+|.+|+... +.+..+ ...+++|.+++.+..
T Consensus 167 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~ll~~ 245 (450)
T 2jdq_A 167 TRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV-IDAGVCRRLVELLMH 245 (450)
T ss_dssp HHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHH-HHTTTHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHH-HHcCcHHHHHHHHCC
Confidence 99999999999831 147888999999864 445555 467899999999887
Q ss_pred cChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 271 VSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 271 ~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
.++..++.|+.+|.+++... +...+.+++.|+++.|+.+|+.. .+..|+.|...|..+..
T Consensus 246 ~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 246 NDYKVVSPALRAVGNIVTGD----DIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITA 305 (450)
T ss_dssp SCHHHHHHHHHHHHHHTTSC----HHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHhhCC----hHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 78889999999999999864 34566677889999999988864 78899998888877754
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.66 E-value=5.3e-15 Score=157.25 Aligned_cols=243 Identities=12% Similarity=0.082 Sum_probs=187.7
Q ss_pred hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhh
Q 046820 63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL 142 (350)
Q Consensus 63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~ 142 (350)
.+..+++.|.++ +.+.+..+++.|+.. ++.++. .|++|.|+.+|. +. +..+++.|+.+|. +
T Consensus 116 ~i~~lv~~L~~~----~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~---~~----d~~vr~~A~~~L~-~ 176 (780)
T 2z6g_A 116 AHPTNVQRLAEP----SQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLN---DE----DQVVVNKAAVMVH-Q 176 (780)
T ss_dssp ----------CC----SCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHH---CS----CHHHHHHHHHHHH-H
T ss_pred cHHHHHHHhcCc----cHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHC---CC----CHHHHHHHHHHHH-H
Confidence 356777888764 345666677776643 445666 899999999996 22 4779999999999 7
Q ss_pred CCCChhhHhhcc-cCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHH
Q 046820 143 FPLEGEALTHLG-SASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTAT 220 (350)
Q Consensus 143 Ls~~~e~k~~i~-~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~ 220 (350)
|+.+++++..+. .++.++.|+.+|+++ +.+.|.+|+.+|++|+.. .+++..|+. .|+|+.|+++|+++ ++..+
T Consensus 177 L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~---~~~~~~i~~-~g~I~~Lv~lL~~~-~~~v~ 251 (780)
T 2z6g_A 177 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH---REGLLAIFK-SGGIPALVNMLGSP-VDSVL 251 (780)
T ss_dssp HHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS---HHHHHHHHH-TTHHHHHHHHTTCS-CHHHH
T ss_pred HhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC---chhHHHHHH-cCCHHHHHHHHcCC-CHHHH
Confidence 887777776665 468999999999977 899999999999999876 367878877 69999999999977 68899
Q ss_pred HHHHHHHHHhhhhH----------------------------HHHHHHHHHHhC-CHhhHHHhhcCCCChHHHHHHHhcc
Q 046820 221 KAALVVIYHTIASS----------------------------ASALSVLDGICS-TDCGRENANDKPLTMPVVVKKILRV 271 (350)
Q Consensus 221 k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~-~~eGr~ai~~~~~~v~~lv~~l~~~ 271 (350)
+.|+.+|.+|+... +.++.+|..|+. +++++..+. ..++++.|++.+...
T Consensus 252 ~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~-~~~~i~~Lv~lL~~~ 330 (780)
T 2z6g_A 252 FHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL-ASGGPQALVNIMRTY 330 (780)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH-TTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH-HcCCHHHHHHHHhcC
Confidence 99999999997531 356678888885 689999986 568899999988776
Q ss_pred Ch-hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820 272 SE-LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336 (350)
Q Consensus 272 S~-~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~ 336 (350)
++ ...+.|+.+|++||... .....+++.|+++.|+.+++.+ .+..++.|...|..|...
T Consensus 331 ~~~~~~~~a~~aL~~Ls~~~-----~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a~~~L~~L~~~ 390 (780)
T 2z6g_A 331 TYEKLLWTTSRVLKVLSVCS-----SNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDA 390 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTST-----THHHHHHHTTHHHHHGGGTTCS-CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhcCh-----HHHHHHHHhchHHHHHHHHcCC-chHHHHHHHHHHHHHhcc
Confidence 54 56789999999999753 3667788999999999888755 678899988888877653
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.66 E-value=8e-15 Score=146.33 Aligned_cols=253 Identities=13% Similarity=0.107 Sum_probs=201.0
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
+..+++-+.+ +++..+..|+..|..++..++.++..+.+.|++|.|+.+|. ++ +.++++.+..+|. ++
T Consensus 103 i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~---~~----~~~~~~~~~~~L~-~l 170 (529)
T 1jdh_A 103 IPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KT----NVKFLAITTDCLQ-IL 170 (529)
T ss_dssp HHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG---CC----CHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh---cC----CHHHHHHHHHHHH-HH
Confidence 3344444443 46678889999999999998889999999999999999996 22 3667788878887 67
Q ss_pred CCC-hhhHhhcccCCcHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820 144 PLE-GEALTHLGSASSMGCMIWFLNSGD-LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK 221 (350)
Q Consensus 144 s~~-~e~k~~i~~~~~l~~Lv~~L~~gs-~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k 221 (350)
+.. ++++..+.+.++++.++.+|++++ ...+..++.+|.+|+.. +.++..+.. .|+++.|+.++.++ ++...+
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~-~g~~~~L~~ll~~~-~~~~~~ 245 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC---SSNKPAIVE-AGGMQALGLHLTDP-SQRLVQ 245 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---TTHHHHHHH-TTHHHHHHTTTTSS-CHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC---cccHHHHHH-CCCHHHHHHHHhCC-ChHHHH
Confidence 654 588888888899999999999884 55666788999999865 367777745 79999999999877 778889
Q ss_pred HHHHHHHHhhhh-------------------------HHHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhccC--h
Q 046820 222 AALVVIYHTIAS-------------------------SASALSVLDGICST-DCGRENANDKPLTMPVVVKKILRVS--E 273 (350)
Q Consensus 222 ~Al~aL~~L~~~-------------------------~e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~~S--~ 273 (350)
.++.+|.+|+.. .+.++.+|.+|+.. ++.+..+. +.++++.+++.+...+ +
T Consensus 246 ~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~L~~ll~~~~~~~ 324 (529)
T 1jdh_A 246 NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVLRAGDRE 324 (529)
T ss_dssp HHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHH-HTTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHHccCCHH
Confidence 999999998742 14789999999885 56888875 6789999999997643 5
Q ss_pred hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 274 LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 274 ~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
..++.|+.+|++|+...++ ++..+..+.+.|+++.|+.+|+.+..+..++.|...|..+..
T Consensus 325 ~v~~~a~~~L~nl~~~~~~-~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 325 DITEPAICALRHLTSRHQE-AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHHHHHHHHHHHHTSSSTT-HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCch-HHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 7889999999999986542 234566777999999999999876556788888777776653
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.66 E-value=1.2e-15 Score=138.35 Aligned_cols=185 Identities=15% Similarity=0.203 Sum_probs=153.5
Q ss_pred CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhH-hhcccC
Q 046820 78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEAL-THLGSA 156 (350)
Q Consensus 78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k-~~i~~~ 156 (350)
++++.+..|+..|..++..++.++..+.+.|++|.|+.+|. ++ +..+++.|+.+|. +|+.+++++ ..+.+.
T Consensus 66 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~---~~----~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~ 137 (252)
T 4db8_A 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SP----NEQILQEALWALS-NIASGGNEQIQAVIDA 137 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---CS----CHHHHHHHHHHHH-HHTTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HhhcCCchHHHHHHHC
Confidence 45678889999999999999999999999999999999997 22 4779999999999 888777766 777889
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHH
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS 236 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~ 236 (350)
|.++.|+.+|++++.+.+.+|+.+|.+|+... +..+..+.. .|+++.|++++.++ ++.....|+.+|.+++.
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~---- 209 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVID-AGALPALVQLLSSP-NEQILQEALWALSNIAS---- 209 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHH-TTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTT----
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--hHHHHHHHH-CCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhc----
Confidence 99999999999999999999999999999754 366666645 79999999999976 66555555555555542
Q ss_pred HHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcc
Q 046820 237 ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCM 288 (350)
Q Consensus 237 aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~ 288 (350)
..++.+..+. +.++++.+++.+...++..++.|+.+|.+||+
T Consensus 210 ---------~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 210 ---------GGNEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp ---------SCHHHHHHHH-HTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred ---------CCHHHHHHHH-HCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 2355666664 67899999999988889999999999999986
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.65 E-value=3.4e-14 Score=138.67 Aligned_cols=252 Identities=12% Similarity=0.076 Sum_probs=199.8
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
+..+++.+.+. .+...+..|+..|..++..++.++..+.+.|++|.|+.+|. ++ +..+++.|+.+|. ++
T Consensus 66 i~~L~~~L~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~----~~~vr~~a~~~L~-~l 134 (450)
T 2jdq_A 66 VARFVEFLKRK---ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS---SE----FEDVQEQAVWALG-NI 134 (450)
T ss_dssp HHHHHHHHTCT---TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTT---CS----CHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HH
Confidence 44555555442 15678889999999999988888888889999999999996 22 4779999999998 67
Q ss_pred CCC-hhhHhhcccCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820 144 PLE-GEALTHLGSASSMGCMIWFLNS-GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK 221 (350)
Q Consensus 144 s~~-~e~k~~i~~~~~l~~Lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k 221 (350)
..+ ++.+..+.+.+.++.++.+|++ .+.+.|.+|+.+|.+|+...+ +.....+ ..++++.|+++++++ ++....
T Consensus 135 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~--~~~~l~~L~~~l~~~-~~~v~~ 210 (450)
T 2jdq_A 135 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS-PPPEFAK--VSPCLNVLSWLLFVS-DTDVLA 210 (450)
T ss_dssp HTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSS-SCCCGGG--TGGGHHHHHHHTTCC-CHHHHH
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCC-CCCCHHH--HHHHHHHHHHHHccC-CHHHHH
Confidence 644 3677777788999999999996 589999999999999996531 1222223 279999999999876 677888
Q ss_pred HHHHHHHHhhhh----------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccCh
Q 046820 222 AALVVIYHTIAS----------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSE 273 (350)
Q Consensus 222 ~Al~aL~~L~~~----------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~ 273 (350)
.|..+|.+++.. .+.|+.+|.+|+...+.......+.++++.+++.+...++
T Consensus 211 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 290 (450)
T 2jdq_A 211 DACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKE 290 (450)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCH
Confidence 999999999642 1478999999998644443333467899999999888788
Q ss_pred hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 274 LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 274 ~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
..++.|+.+|.+++..+ ....+.+++.|+++.|+.+|+.+ .+..|+.|...|..+..
T Consensus 291 ~vr~~a~~~L~~l~~~~----~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 291 SIKKEACWTISNITAGN----RAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHHHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC----HHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence 88999999999999754 34666777889999999999865 78899999998887754
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.64 E-value=2.2e-14 Score=144.76 Aligned_cols=251 Identities=16% Similarity=0.115 Sum_probs=201.5
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
+..++.-+.+. .++..+..|+..|..++..++.++..+.+.|++|.|+.+|.+ + +..+++.|+.+|. ++
T Consensus 132 i~~Lv~~L~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~---~----~~~vr~~A~~aL~-~l 200 (530)
T 1wa5_B 132 VPRLVEFMREN---QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT---G----SVEVKEQAIWALG-NV 200 (530)
T ss_dssp HHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH---C----CHHHHHHHHHHHH-HH
T ss_pred HHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC---C----CHHHHHHHHHHHH-HH
Confidence 34444444432 156778899999999999888899999999999999999972 2 3779999999999 77
Q ss_pred CCC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHH
Q 046820 144 PLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKA 222 (350)
Q Consensus 144 s~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~ 222 (350)
..+ ++++..+...+.++.|+.+|.+.+.+.+.+|+.+|.+|+...+ +.....+ ..++++.|+.+|.++ ++.....
T Consensus 201 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~--~~~~l~~L~~lL~~~-d~~v~~~ 276 (530)
T 1wa5_B 201 AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK-PQPDWSV--VSQALPTLAKLIYSM-DTETLVD 276 (530)
T ss_dssp HTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS-SCCCHHH--HGGGHHHHHHHTTCC-CHHHHHH
T ss_pred hCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC-CCCcHHH--HHhHHHHHHHHHcCC-CHHHHHH
Confidence 644 4777777778999999999999999999999999999996531 1222222 379999999999876 6778889
Q ss_pred HHHHHHHhhhh----------------------------HHHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhccCh
Q 046820 223 ALVVIYHTIAS----------------------------SASALSVLDGICST-DCGRENANDKPLTMPVVVKKILRVSE 273 (350)
Q Consensus 223 Al~aL~~L~~~----------------------------~e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~~S~ 273 (350)
|+.+|.+|+.. .+.|+.+|.+|+.. ++....+. +.+++|.++..|...++
T Consensus 277 a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~ 355 (530)
T 1wa5_B 277 ACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSPKE 355 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHH-HcchHHHHHHHHcCCCH
Confidence 99999999742 14789999999974 55555554 57899999998887788
Q ss_pred hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 274 LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 274 ~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
..++.|+.+|.+++..+ ....+.+++.|+++.|+.+|+.+ .+..|+.|...|..+..
T Consensus 356 ~vr~~A~~aL~~l~~~~----~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 356 NIKKEACWTISNITAGN----TEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASS 412 (530)
T ss_dssp HHHHHHHHHHHHHTTSC----HHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC----HHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHh
Confidence 88999999999999854 34666777899999999999864 78999999999988865
No 32
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.62 E-value=1.5e-14 Score=130.06 Aligned_cols=199 Identities=17% Similarity=0.177 Sum_probs=160.5
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
+..++.-+.+ ++.+.+..|+..|..++..++.++..+.+.|++|.|+.+|. ++ +.++++.|+.+|. +|
T Consensus 46 i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~---~~----~~~v~~~a~~~L~-~l 113 (252)
T 4hxt_A 46 VEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---ST----DSEVQKEAARALA-NI 113 (252)
T ss_dssp HHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CS----SHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HH
Confidence 3445555544 46678889999999999998999999999999999999996 22 4778999999999 78
Q ss_pred C-CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHH
Q 046820 144 P-LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKA 222 (350)
Q Consensus 144 s-~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~ 222 (350)
. .+++++..+.+.|.++.|+.+|++++.+.+.+|+.+|.+|+... +..+..+.. .|+++.|+.++.++ ++.....
T Consensus 114 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~ 189 (252)
T 4hxt_A 114 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DEAIKAIVD-AGGVEVLVKLLTST-DSEVQKE 189 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHH-CcCHHHHHHHHCCC-CHHHHHH
Confidence 7 56688888888899999999999999999999999999999754 356556645 89999999999865 5555555
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcccccc
Q 046820 223 ALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKR 292 (350)
Q Consensus 223 Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~ 292 (350)
|+.+|.+++. ..++.+..+. +.++++.+++.+...++..++.|+.+|.+|+.....
T Consensus 190 a~~~L~~l~~-------------~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 190 AARALANIAS-------------GPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHTT-------------SBHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHc-------------CCHHHHHHHH-HCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 5555555542 1345555664 689999999998888889999999999999987653
No 33
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.62 E-value=5.8e-14 Score=145.49 Aligned_cols=253 Identities=13% Similarity=0.109 Sum_probs=200.4
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
+..+++-+.+ +++..+..|+..|.+++..++.++..+.+.|++|.|+.+|. .+ +..++..++.+|. ++
T Consensus 100 i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~---~~----~~~~~~~a~~~L~-~L 167 (644)
T 2z6h_A 100 IPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KT----NVKFLAITTDCLQ-IL 167 (644)
T ss_dssp HHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG---CC----CHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHC---cC----CHHHHHHHHHHHH-HH
Confidence 4445555544 46678889999999999998889999999999999999996 22 3556666777777 67
Q ss_pred CC-ChhhHhhcccCCcHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820 144 PL-EGEALTHLGSASSMGCMIWFLNSGD-LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK 221 (350)
Q Consensus 144 s~-~~e~k~~i~~~~~l~~Lv~~L~~gs-~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k 221 (350)
+. ++++|..+.+.++++.|+.+|++++ ...+.+++.+|.+|+.. +.++..+-. .|+++.|+.+++++ ++....
T Consensus 168 a~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~---~~~~~~l~~-~g~l~~L~~ll~~~-~~~~~~ 242 (644)
T 2z6h_A 168 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC---SSNKPAIVE-AGGMQALGLHLTDP-SQRLVQ 242 (644)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC---TTHHHHHHH-TTHHHHHHTTTTCS-CHHHHH
T ss_pred HhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC---cccHHHHHH-CCCHHHHHHHHhcC-CHHHHH
Confidence 65 5688888888899999999999884 66788999999999864 367777645 79999999999876 678889
Q ss_pred HHHHHHHHhhhh-------------------------HHHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhccC--h
Q 046820 222 AALVVIYHTIAS-------------------------SASALSVLDGICST-DCGRENANDKPLTMPVVVKKILRVS--E 273 (350)
Q Consensus 222 ~Al~aL~~L~~~-------------------------~e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~~S--~ 273 (350)
.++.+|.+|+.. .+.+..+|.+|+.. ++.+..+. +.++|+.|++.+...+ +
T Consensus 243 ~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~-~~g~v~~Lv~lL~~~~~~~ 321 (644)
T 2z6h_A 243 NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVLRAGDRE 321 (644)
T ss_dssp HHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHHHHHccCCcH
Confidence 999999999752 14789999999885 56777775 6789999999998744 6
Q ss_pred hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 274 LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 274 ~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
..++.|+.+|.+|+...++ +......+...|+++.|+.+|+....+..++.|..+|..+..
T Consensus 322 ~v~~~a~~aL~nL~~~~~~-~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 322 DITEPAICALRHLTSRHQE-AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HHHHHHHHHHHHHTSSSTT-HHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCch-HHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 8899999999999986542 122344466889999999999876556888888888877654
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.5e-14 Score=147.73 Aligned_cols=223 Identities=12% Similarity=0.090 Sum_probs=176.4
Q ss_pred ccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHH---HHHH
Q 046820 100 NKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLS---RRRN 176 (350)
Q Consensus 100 nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~---~r~~ 176 (350)
||..+.++|+||.|+.++.+ + +..+++.|+.+|. +|+.++++|..+...|+++.|+.+|.+++.. .|.+
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S---~----s~~~re~A~~aL~-nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~ 520 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHN---L----SPNCKQQVVRIIY-NITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRIL 520 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGG---S----CHHHHHHHHHHHH-HHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcC---C----CHHHHHHHHHHHH-HHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHH
Confidence 78889999999999999962 2 3678999999999 8998889999999999999999999999654 8999
Q ss_pred HHHHHHHHhcCCCchhHHhhhh--chhhHHHHHHHHhcCCCCh-------------HHHHHHHHHHHHhhhhH-------
Q 046820 177 AVLLLTELVSSDSDQRKVNVLS--ENEGAIEALFKLIEEPISP-------------TATKAALVVIYHTIASS------- 234 (350)
Q Consensus 177 Aa~lL~~Ls~~~~~~~~~~~Ig--~~~g~i~~LV~lL~~~~~~-------------~a~k~Al~aL~~L~~~~------- 234 (350)
|+.+|.+|+...+ ....++ ...|+|++|+.||..+... ..+..|+++|.||+...
T Consensus 521 AA~ALArLlis~n---p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~ 597 (778)
T 3opb_A 521 GCRALTRMLIFTN---PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEV 597 (778)
T ss_dssp HHHHHHHHHHTSC---HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHhcCC---HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHH
Confidence 9999999986542 223453 2259999999999832111 23789999999997531
Q ss_pred --------------------------HHHHHHHHHHhCCHhhH-HHhhcCCC-----ChHHHHHHHhccChhHHHHHHHH
Q 046820 235 --------------------------ASALSVLDGICSTDCGR-ENANDKPL-----TMPVVVKKILRVSELATELSVSI 282 (350)
Q Consensus 235 --------------------------e~aL~vL~~L~~~~eGr-~ai~~~~~-----~v~~lv~~l~~~S~~~~E~Av~i 282 (350)
+.|+.++.+|+.+++|+ +.+..... .++.+|.++.......++.|+++
T Consensus 598 r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagA 677 (778)
T 3opb_A 598 CKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAI 677 (778)
T ss_dssp HHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHH
Confidence 37999999999999998 46754331 37789998877778899999999
Q ss_pred HHHHccccccchHHHHHHHHhh-chHHHHHHHHHhc-CchHHHHHHHHHHHHHHhcc
Q 046820 283 LWKLCMNEKREEKTAFVEALQV-GAFQKLLVLLQVG-CAERTKEKASEVLKLMNLHR 337 (350)
Q Consensus 283 L~~Lc~~~~~~~~~~~~~~~~~-G~v~~LL~llq~~-~t~~ak~kA~~LLk~l~~~~ 337 (350)
|.+++... +...+.+++. ++++.|+.+++.. ..+..+.++..+|..+..+-
T Consensus 678 LAnLts~~----~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 678 FANIATTI----PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHC----HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCC----hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 99997643 4567777765 8999999999973 35889999999999888744
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.58 E-value=1.9e-13 Score=145.23 Aligned_cols=243 Identities=14% Similarity=0.113 Sum_probs=194.0
Q ss_pred CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCC-ChhhHhhcccC
Q 046820 78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPL-EGEALTHLGSA 156 (350)
Q Consensus 78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~-~~e~k~~i~~~ 156 (350)
++...+..|+..|.+++..++.+|..+.+.|++|.|+.+|. .+ +..+++.++.+|. +|+. +++++..+.+.
T Consensus 246 ~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~---~~----~~~v~~~a~~aL~-~La~~~~e~~~~i~~~ 317 (780)
T 2z6g_A 246 PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KT----NVKFLAITTDCLQ-ILAYGNQESKLIILAS 317 (780)
T ss_dssp SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG---CC----CHHHHHHHHHHHH-HHHTTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHh---cC----CHHHHHHHHHHHH-HHhcCChHHHHHHHHc
Confidence 46678889999999999999899999999999999999996 22 3567788877887 6665 45888888888
Q ss_pred CcHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh--
Q 046820 157 SSMGCMIWFLNSGD-LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS-- 233 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs-~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~-- 233 (350)
+.++.|+.+|++++ ...+..|+.+|.+|+... .++..+.. .|+++.|+.++.++ ++..++.|+.+|.+|+..
T Consensus 318 ~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~---~~~~~i~~-~g~l~~Ll~lL~~~-~~~~~~~a~~~L~~L~~~~~ 392 (780)
T 2z6g_A 318 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVE-AGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAAT 392 (780)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST---THHHHHHH-TTHHHHHGGGTTCS-CHHHHHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh---HHHHHHHH-hchHHHHHHHHcCC-chHHHHHHHHHHHHHhccch
Confidence 99999999999885 455668899999999653 56766645 79999999999876 677889999999998631
Q ss_pred -----------------------HHHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhccC--hhHHHHHHHHHHHHc
Q 046820 234 -----------------------SASALSVLDGICST-DCGRENANDKPLTMPVVVKKILRVS--ELATELSVSILWKLC 287 (350)
Q Consensus 234 -----------------------~e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~~S--~~~~E~Av~iL~~Lc 287 (350)
.+.|+.+|.+|+.. ++.+..+. ..++|+.|++.|...+ +..++.|+.+|.+|+
T Consensus 393 ~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 393 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH-TTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH-HCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 15789999999886 46666665 7889999999998643 378999999999998
Q ss_pred cccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 288 MNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 288 ~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
....+ .......+...|+++.|+.+|+....+..++.|...|..+..
T Consensus 472 ~~~~~-~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 472 SRHQD-AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp SSSTT-HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred hcCch-HHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 76532 122344556889999999988876555888888888887763
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.55 E-value=3e-13 Score=128.40 Aligned_cols=203 Identities=7% Similarity=0.034 Sum_probs=162.0
Q ss_pred cchHHHHHHHhHhhhc--------cCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHH-HHHhccccccccchHH
Q 046820 61 SVEVLEINSKIKTACE--------TQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAA-AFESFSKTCLDENVSV 131 (350)
Q Consensus 61 ~~~v~~lv~~l~~~~~--------~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~-lL~~~~~~~~~~~~~~ 131 (350)
...+...+.-|.+... .++.+.+..|+..|..+... ..|...|.+.|++|.|+. +|. ++ +..+
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~---s~----~~~v 98 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLE---AG----AAGL 98 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTT---CS----SHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHc---CC----CHHH
Confidence 4456666666765310 23457888999999999975 458888999999999999 996 22 4779
Q ss_pred HHHHHHHHHhhCC-CChhhHhhcccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHH
Q 046820 132 LEEILSTLILLFP-LEGEALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFK 209 (350)
Q Consensus 132 ~e~Al~~L~~~Ls-~~~e~k~~i~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~ 209 (350)
++.|+.+|. ++. -+++.+..+.+.|+++.|+.+|+++ +...|.+|+.+|-+|+... +.....+.. .|+++.|+.
T Consensus 99 r~~Aa~~Lg-~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~--~~~~~~~~~-~ggi~~L~~ 174 (296)
T 1xqr_A 99 RWRAAQLIG-TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ--EAGLLQFLR-LDGFSVLMR 174 (296)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTHHHHHHH
T ss_pred HHHHHHHHH-HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC--cHHHHHHHH-CCCHHHHHH
Confidence 999999998 665 4457788888889999999999976 7899999999999998654 345545534 689999999
Q ss_pred HhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccc
Q 046820 210 LIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMN 289 (350)
Q Consensus 210 lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~ 289 (350)
+|+++ ++...+.|..+|.+|+.. .++-+..+. +.|+|+.|+++|...+...+|.|+.+|.+|+..
T Consensus 175 lL~~~-d~~v~~~A~~aLs~L~~~-------------~~~~~~~vv-~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 175 AMQQQ-VQKLKVKSAFLLQNLLVG-------------HPEHKGTLC-SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHSS-CHHHHHHHHHHHHHHHHH-------------CGGGHHHHH-HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHcCC-CHHHHHHHHHHHHHHHhC-------------ChHHHHHHH-HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99986 778888888888888642 255667775 789999999998888889999999999999986
Q ss_pred c
Q 046820 290 E 290 (350)
Q Consensus 290 ~ 290 (350)
.
T Consensus 240 ~ 240 (296)
T 1xqr_A 240 F 240 (296)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.42 E-value=3.1e-12 Score=121.37 Aligned_cols=183 Identities=16% Similarity=0.129 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHH-HHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHH
Q 046820 130 SVLEEILSTLILLFPLEGEALTHLGSASSMGCMIW-FLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALF 208 (350)
Q Consensus 130 ~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~-~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV 208 (350)
+-.+.|+..|. .+.-+.++...+...|.++.++. +|.+++.+.|+.|+.+|-+++... +.++..+-+ .|+++.|+
T Consensus 55 e~k~~Al~~L~-~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n--~~~~~~vv~-~g~l~~Ll 130 (296)
T 1xqr_A 55 QEREGALELLA-DLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV--AAIQEQVLG-LGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHH-HHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTHHHHHH
T ss_pred HHHHHHHHHHH-HHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHH-CCCHHHHH
Confidence 34566777777 45444467777778899999999 999999999999999999999764 467666645 79999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcc
Q 046820 209 KLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCM 288 (350)
Q Consensus 209 ~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~ 288 (350)
.+|+++.++...+.|+.+|.+++. ..+++..++. ..++||.|+..|...+...+..|+.+|.++|.
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~-------------~~~~~~~~~~-~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~ 196 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVR-------------EQEAGLLQFL-RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 196 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHT-------------TCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHc-------------CCcHHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 999865455555555555555542 3456777775 46899999999988889999999999999998
Q ss_pred ccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 289 NEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 289 ~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
.+ .+..+.+++.|+++.|+.+|.+. .+..+++|...|..+..
T Consensus 197 ~~----~~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 197 GH----PEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HC----GGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHT
T ss_pred CC----hHHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHh
Confidence 64 34777888999999999999876 67899999888876655
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.26 E-value=3.1e-10 Score=119.42 Aligned_cols=249 Identities=10% Similarity=0.067 Sum_probs=180.0
Q ss_pred chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhcc-CchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820 62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDN-AAVSVLAAAFESFSKTCLDENVSVLEEILSTLI 140 (350)
Q Consensus 62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~a-Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~ 140 (350)
..+..+...+.......+...+.-|+.-|.-++.. +..|..|++. |+++.|+.++.. .. +..+.-.++.+|.
T Consensus 330 ~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~--~~----d~s~~Ygal~IL~ 402 (778)
T 3opb_A 330 INLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKS--QK----MTHCLYGLLVIMA 402 (778)
T ss_dssp CCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTT--TC----CTTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhC--CC----CchHHHHHHHHHH
Confidence 34555655555444333444577799999999875 5677788776 999999999972 12 2447788888988
Q ss_pred hhCCCCh--------------------------------------h-hHhhcccCCcHHHHHHHHccCCHHHHHHHHHHH
Q 046820 141 LLFPLEG--------------------------------------E-ALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLL 181 (350)
Q Consensus 141 ~~Ls~~~--------------------------------------e-~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL 181 (350)
||.-+. + +++.+.+.|+++.|+.++++++...|+.|+.+|
T Consensus 403 -NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL 481 (778)
T 3opb_A 403 -NLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRII 481 (778)
T ss_dssp -HTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred -HhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 885211 1 455777889999999999999999999999999
Q ss_pred HHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh--HHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCC
Q 046820 182 TELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP--TATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPL 259 (350)
Q Consensus 182 ~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~--~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~ 259 (350)
.+|+.. +.++..+.. .|+++.|+.+|.++... +.+..|+.+|.++..+.+-.+. +. | . ...+
T Consensus 482 ~nLS~d---~~~R~~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~----f~----~-~---~~~~ 545 (778)
T 3opb_A 482 YNITRS---KNFIPQLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI----FK----K-Y---SALN 545 (778)
T ss_dssp HHHHTS---GGGHHHHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH----SS----S-S---CSTT
T ss_pred HHHcCC---HHHHHHHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH----cC----C-C---cccc
Confidence 999865 478888856 89999999999987432 2677888888888643211110 00 1 0 1238
Q ss_pred ChHHHHHHHhcc--Ch------------hHHHHHHHHHHHHccccccchHHHHHHHHhh-chHHHHHHHHHhcCchHHHH
Q 046820 260 TMPVVVKKILRV--SE------------LATELSVSILWKLCMNEKREEKTAFVEALQV-GAFQKLLVLLQVGCAERTKE 324 (350)
Q Consensus 260 ~v~~lv~~l~~~--S~------------~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~-G~v~~LL~llq~~~t~~ak~ 324 (350)
+||+|+++|... +. ..+-.|+-+|-+|+....+..++.+..++++ |+++.|..+|.++ ++..|+
T Consensus 546 aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~Vrr 624 (778)
T 3opb_A 546 AIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQR 624 (778)
T ss_dssp HHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHH
T ss_pred chHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHH
Confidence 999999987621 11 2377899999999997532113467778885 9999998888766 788999
Q ss_pred HHHHHHHHHHh
Q 046820 325 KASEVLKLMNL 335 (350)
Q Consensus 325 kA~~LLk~l~~ 335 (350)
.|.+++-.|-.
T Consensus 625 AA~elI~NL~~ 635 (778)
T 3opb_A 625 STLELISNMMS 635 (778)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999999986
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.06 E-value=8.8e-09 Score=106.16 Aligned_cols=254 Identities=13% Similarity=0.140 Sum_probs=182.2
Q ss_pred cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820 61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI 140 (350)
Q Consensus 61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~ 140 (350)
.+.|..|+.+++++. -.+++..|+..|+.++|+. |. -+.+++.|.|+..|.... .+.+....++.+|+
T Consensus 20 ~etI~~L~~Rl~~~t---l~eDRR~Av~~Lk~~sk~y---~~-~Vg~~~l~~li~~L~~d~-----~D~e~v~~~LetL~ 87 (651)
T 3grl_A 20 AETIQKLCDRVASST---LLDDRRNAVRALKSLSKKY---RL-EVGIQAMEHLIHVLQTDR-----SDSEIIGYALDTLY 87 (651)
T ss_dssp HHHHHHHHHHHHHCC---SHHHHHHHHHHHHHTTTTT---TT-HHHHHTHHHHHHHHHSCT-----TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHHh---HH-HhhhhhHHHHHHHHhccc-----ccHHHHHHHHHHHH
Confidence 356888888887753 4688999999999998764 32 334667999999997322 24778888899887
Q ss_pred hhCCCChh-----------------hH-hhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhh
Q 046820 141 LLFPLEGE-----------------AL-THLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEG 202 (350)
Q Consensus 141 ~~Ls~~~e-----------------~k-~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g 202 (350)
-.+..+++ +- ..+.+.+.+..|+.+|++.+...|.+++.+|..|..... +.+.+.|=..++
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~-~~~Q~~Il~~p~ 166 (651)
T 3grl_A 88 NIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLG-PQVQQIILVSPM 166 (651)
T ss_dssp HHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSH-HHHHHHHHHSTT
T ss_pred HHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCc-HHHHHHHHhCcc
Confidence 33342221 11 133567899999999999999999999999999987643 235555545589
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH--------------------------------HHHHHHHHHHhCCHhh
Q 046820 203 AIEALFKLIEEPISPTATKAALVVIYHTIASS--------------------------------ASALSVLDGICSTDCG 250 (350)
Q Consensus 203 ~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~--------------------------------e~aL~vL~~L~~~~eG 250 (350)
.|+.||.+|.+. ...-...|+-.|.+|+..+ +.||.+|.+|....-.
T Consensus 167 gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s 245 (651)
T 3grl_A 167 GVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS 245 (651)
T ss_dssp HHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence 999999999976 3445666788888886532 4899999999998666
Q ss_pred HHHhhcCCCChHHHHHHHhcc------ChhH---HHHHHHHHHHHcccccc--chHHHHHHHHhhchHHHHHHHHHhcC-
Q 046820 251 RENANDKPLTMPVVVKKILRV------SELA---TELSVSILWKLCMNEKR--EEKTAFVEALQVGAFQKLLVLLQVGC- 318 (350)
Q Consensus 251 r~ai~~~~~~v~~lv~~l~~~------S~~~---~E~Av~iL~~Lc~~~~~--~~~~~~~~~~~~G~v~~LL~llq~~~- 318 (350)
.+.+..+.++||.|..++... +++- .-.++.++..+|..++. ++..+...+.+.|++..|+.++-+.+
T Consensus 246 NQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~ 325 (651)
T 3grl_A 246 NQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGV 325 (651)
T ss_dssp HHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSC
T ss_pred HHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCC
Confidence 777778889999999866422 1112 23367777777876542 13456666679999999999887654
Q ss_pred chHHHHHHHH
Q 046820 319 AERTKEKASE 328 (350)
Q Consensus 319 t~~ak~kA~~ 328 (350)
+...|..|-.
T Consensus 326 p~~i~~~Al~ 335 (651)
T 3grl_A 326 PADILTETIN 335 (651)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3456655433
No 40
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.49 E-value=2.1e-05 Score=68.81 Aligned_cols=189 Identities=14% Similarity=0.069 Sum_probs=131.8
Q ss_pred cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820 61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI 140 (350)
Q Consensus 61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~ 140 (350)
+..+..+++.+.+ ++...+..|+..|..+. ..+++|.|+.+|. ++ +..++..|+.+|.
T Consensus 18 ~~~~~~L~~~L~~----~~~~vR~~A~~~L~~~~-----------~~~~~~~L~~~l~---~~----~~~vr~~a~~aL~ 75 (211)
T 3ltm_A 18 PEKVEMYIKNLQD----DSYYVRRAAAYALGKIG-----------DERAVEPLIKALK---DE----DAWVRRAAADALG 75 (211)
T ss_dssp GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTT---CS----CHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHcC----CCHHHHHHHHHHHHHhC-----------CccHHHHHHHHHc---CC----CHHHHHHHHHHHH
Confidence 4567778888765 35677777887776653 2467999999986 22 4778888988887
Q ss_pred hhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHH
Q 046820 141 LLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTAT 220 (350)
Q Consensus 141 ~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~ 220 (350)
.+. .++.++.|+..|++.+...|..|+..|..+. . +++++.|+.++.++ ++...
T Consensus 76 -~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------------~-~~~~~~L~~~l~d~-~~~vr 129 (211)
T 3ltm_A 76 -QIG----------DERAVEPLIKALKDEDGWVRQSAAVALGQIG-------------D-ERAVEPLIKALKDE-DWFVR 129 (211)
T ss_dssp -HHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------------C-GGGHHHHHHHTTCS-SHHHH
T ss_pred -hhC----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------------c-HHHHHHHHHHHhCC-CHHHH
Confidence 332 3457899999999999999999988887663 2 46788899999766 55555
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHH
Q 046820 221 KAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVE 300 (350)
Q Consensus 221 k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~ 300 (350)
..|+.+|.++. .+..++.+.+.+...++..+..|+.+|..+..
T Consensus 130 ~~a~~aL~~~~-------------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------ 172 (211)
T 3ltm_A 130 IAAAFALGEIG-------------------------DERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ 172 (211)
T ss_dssp HHHHHHHHHHC-------------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------
T ss_pred HHHHHHHHHcC-------------------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------
Confidence 55555554441 23467888887766677888899999877743
Q ss_pred HHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccC
Q 046820 301 ALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRD 338 (350)
Q Consensus 301 ~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~ 338 (350)
..+++.|..+++. ..+..|+.|.+.|..+.....
T Consensus 173 ---~~~~~~L~~~l~d-~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 173 ---ERVRAAMEKLAET-GTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ---HHHHHHHHHHHHH-CCHHHHHHHHHHHHC------
T ss_pred ---hhHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCCC
Confidence 1245556666664 478999999999888877444
No 41
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.28 E-value=0.00014 Score=63.06 Aligned_cols=188 Identities=13% Similarity=0.060 Sum_probs=134.4
Q ss_pred cCCcchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHH
Q 046820 58 PVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILS 137 (350)
Q Consensus 58 p~~~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~ 137 (350)
+..+.....+++.|.+. ++..+..|+..|..+.. .++++.|+.+|. ++ +..++..|+.
T Consensus 10 ~~~~~~~~~~i~~L~~~----~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~---~~----~~~vr~~a~~ 67 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD-----------ERAVEPLIKALK---DE----DAWVRRAAAD 67 (201)
T ss_dssp CCCHHHHHHHHHHTTCS----CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT---CS----SHHHHHHHHH
T ss_pred ccCCcchHHHHHHhcCC----CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHc---CC----CHHHHHHHHH
Confidence 34455677788888773 66778888888776532 367999999995 32 4678888888
Q ss_pred HHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh
Q 046820 138 TLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP 217 (350)
Q Consensus 138 ~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~ 217 (350)
+|. .+. .+..++.|+..|.+.+...|..|+..|..+. . +++++.|+.++.++ ++
T Consensus 68 ~L~-~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------------~-~~~~~~L~~~l~d~-~~ 121 (201)
T 3ltj_A 68 ALG-QIG----------DERAVEPLIKALKDEDGWVRQSAAVALGQIG-------------D-ERAVEPLIKALKDE-DW 121 (201)
T ss_dssp HHH-HHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------------C-GGGHHHHHHHTTCS-SH
T ss_pred HHH-hhC----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------------c-HHHHHHHHHHHcCC-CH
Confidence 887 232 3468899999999999999999999887653 2 46788899999766 55
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHH
Q 046820 218 TATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTA 297 (350)
Q Consensus 218 ~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~ 297 (350)
.....|..+|..+. .+..++.+.+.+...++..+..|+.+|..+.. .
T Consensus 122 ~vr~~a~~aL~~~~-------------------------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------~-- 168 (201)
T 3ltj_A 122 FVRIAAAFALGEIG-------------------------DERAVEPLIKALKDEDGWVRQSAADALGEIGG------E-- 168 (201)
T ss_dssp HHHHHHHHHHHHHT-------------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------H--
T ss_pred HHHHHHHHHHHHhC-------------------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------h--
Confidence 55555555544431 24567888888777777888999999977743 1
Q ss_pred HHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820 298 FVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMN 334 (350)
Q Consensus 298 ~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~ 334 (350)
.+++.|..+++. ..+..|..|.+.|..+.
T Consensus 169 -------~~~~~L~~~l~d-~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 169 -------RVRAAMEKLAET-GTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------HHHHHHHHHHHH-CCHHHHHHHHHHHHHCC
T ss_pred -------hHHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence 145556666664 47889999988887654
No 42
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.23 E-value=0.00019 Score=74.16 Aligned_cols=253 Identities=13% Similarity=0.091 Sum_probs=169.8
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCcccc------------------chhhccCchHHHHHHHHhcccccc
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNK------------------SCIVDNAAVSVLAAAFESFSKTCL 125 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR------------------~~i~~aGai~~Lv~lL~~~~~~~~ 125 (350)
+..++.-|+... .|.+....+|..|..+...++... .++.+.+.|+.|+.+|. ..
T Consensus 62 l~~li~~L~~d~--~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~---~~-- 134 (651)
T 3grl_A 62 MEHLIHVLQTDR--SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE---EF-- 134 (651)
T ss_dssp HHHHHHHHHSCT--TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT---CC--
T ss_pred HHHHHHHHhccc--ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc---Cc--
Confidence 445555555432 455556667777766655433211 23556688999999996 22
Q ss_pred ccchHHHHHHHHHHHhhCCCCh-hhHhhc-ccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhH
Q 046820 126 DENVSVLEEILSTLILLFPLEG-EALTHL-GSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGA 203 (350)
Q Consensus 126 ~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i-~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~ 203 (350)
+..++-.++..|..++.... +.++.| ..+++++.|+.+|.......|-.|..+|.+|+..+ ++....+.- .|+
T Consensus 135 --df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n--~~iQklVAF-Ena 209 (651)
T 3grl_A 135 --DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN--GAIQKIVAF-ENA 209 (651)
T ss_dssp --CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTH
T ss_pred --cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC--HHHHHHHHH-hcc
Confidence 35677888887774333333 356655 57899999999999888999999999999999875 577777744 899
Q ss_pred HHHHHHHhcCCC---ChHHHHHHHHHHHHhhhhH-------------------------------------HHHHHHHHH
Q 046820 204 IEALFKLIEEPI---SPTATKAALVVIYHTIASS-------------------------------------ASALSVLDG 243 (350)
Q Consensus 204 i~~LV~lL~~~~---~~~a~k~Al~aL~~L~~~~-------------------------------------e~aL~vL~~ 243 (350)
|+.|+++++... ....+.|++.+|.||...| -.++.++..
T Consensus 210 Fe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrl 289 (651)
T 3grl_A 210 FERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRV 289 (651)
T ss_dssp HHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHH
Confidence 999999998532 2467899999999996422 147888888
Q ss_pred HhCCH-------hhHHHhhcCCCChHHHHHHHhcc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhh--------ch
Q 046820 244 ICSTD-------CGRENANDKPLTMPVVVKKILRV--SELATELSVSILWKLCMNEKREEKTAFVEALQV--------GA 306 (350)
Q Consensus 244 L~~~~-------eGr~ai~~~~~~v~~lv~~l~~~--S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~--------G~ 306 (350)
|+.-. ....++ .+.|++..+++.++.. +..-+..|..++..+++.+. .......+. .+
T Consensus 290 Lv~~~~~~~~t~~nQ~~~-~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~----~~Q~~fa~~~vp~~~~~p~ 364 (651)
T 3grl_A 290 LVSPNNPPGATSSCQKAM-FQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ----VNQDYFASVNAPSNPPRPA 364 (651)
T ss_dssp HTCTTSCHHHHHHHHHHH-HHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH----HHHHHHHHCEESSSSCEEH
T ss_pred HhCCCCCCCCCHHHHHHH-HHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH----HHHHHHhhccCCCCCCcCh
Confidence 87741 123345 4788899999988853 56677889999999998653 344444433 22
Q ss_pred HHHHHHHH-HhcCchHHHHHHHHHHHHH
Q 046820 307 FQKLLVLL-QVGCAERTKEKASEVLKLM 333 (350)
Q Consensus 307 v~~LL~ll-q~~~t~~ak~kA~~LLk~l 333 (350)
+-.+|..+ .+--+...|--|...++.+
T Consensus 365 li~lL~~~~~~~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 365 IVVLLMSMVNERQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 33333222 2222456676666666554
No 43
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.98 E-value=5.4e-07 Score=65.19 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=22.3
Q ss_pred cccccccCCccc-CCCCCCcccCCccc
Q 046820 25 GASLIEKDPVTT-TPRNGITYDRVNIL 50 (350)
Q Consensus 25 ~~~eiM~DPVtl-~~~TG~TYDR~sIe 50 (350)
.+.++|+|||++ . ||+||||++|+
T Consensus 8 Is~~~m~dPV~~~~--sG~~yer~~I~ 32 (61)
T 2bay_A 8 ISGKVPRRPVLSPK--SRTIFEKSLLE 32 (61)
T ss_dssp TTCSCCSSEEEETT--TTEEEEHHHHH
T ss_pred CCCCCCCCCEEeCC--CCcEEcHHHHH
Confidence 468999999999 9 99999999998
No 44
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.95 E-value=5.1e-05 Score=79.33 Aligned_cols=198 Identities=10% Similarity=0.093 Sum_probs=133.7
Q ss_pred chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHH-HHHhccccccccchHHHHHHHHHHH
Q 046820 62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAA-AFESFSKTCLDENVSVLEEILSTLI 140 (350)
Q Consensus 62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~-lL~~~~~~~~~~~~~~~e~Al~~L~ 140 (350)
..+..++++|+++ |+..+..|+..|..++. ++.+|+.+...|+|+.++. +|. + .+.+++++|..+|.
T Consensus 34 ~~i~Pll~~L~S~----~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~---D----~~~~Vr~~A~gaLr 101 (684)
T 4gmo_A 34 DKILPVLKDLKSP----DAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLT---D----NNIDSRAAGWEILK 101 (684)
T ss_dssp HTTHHHHHHHSSS----CCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTT---C----SCHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCC----CHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcC---C----CCHHHHHHHHHHHH
Confidence 3566788888764 67889999999999995 7889999888888876655 553 2 35789999999998
Q ss_pred hhCCCCh--hhHhhcccCCcHHHHHHHHccCC---------------------HHHHHHHHHHHHHHhcCCCchhHHhhh
Q 046820 141 LLFPLEG--EALTHLGSASSMGCMIWFLNSGD---------------------LSRRRNAVLLLTELVSSDSDQRKVNVL 197 (350)
Q Consensus 141 ~~Ls~~~--e~k~~i~~~~~l~~Lv~~L~~gs---------------------~~~r~~Aa~lL~~Ls~~~~~~~~~~~I 197 (350)
||+.+. +....+...+.+.+|..+|++.. .+.-.++..+|..|+...+ .....+
T Consensus 102 -nL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~--~~~~~v 178 (684)
T 4gmo_A 102 -VLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARD--EIHEAV 178 (684)
T ss_dssp -HHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHH
T ss_pred -HHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHH
Confidence 887553 45556677889999999886521 1222467788888886542 555566
Q ss_pred hchhhHHHHHHHHhcCC--CChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCC-ChHHHHHHHhccChh
Q 046820 198 SENEGAIEALFKLIEEP--ISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPL-TMPVVVKKILRVSEL 274 (350)
Q Consensus 198 g~~~g~i~~LV~lL~~~--~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~-~v~~lv~~l~~~S~~ 274 (350)
.. .+.++.|+.+|.+. .+......|+.+|+.|+..+.. -...+..+.. .+-.++-.+...+..
T Consensus 179 ~~-~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~-------------~~~~i~~~~~~~~~~~ll~~~~~~~~ 244 (684)
T 4gmo_A 179 AT-KQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLK-------------VGQAITDDQETHVYDVLLKLATGTDP 244 (684)
T ss_dssp HT-CHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHH-------------HHHHHHTCCSSCHHHHHHHHHHSSCT
T ss_pred Hh-cccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHH-------------HHHHHHhcchHHHHHHHHHHhcCCcH
Confidence 45 68999999888542 3456778889999999875543 2233332221 111122223344444
Q ss_pred HHHHHHHHHHHHcc
Q 046820 275 ATELSVSILWKLCM 288 (350)
Q Consensus 275 ~~E~Av~iL~~Lc~ 288 (350)
.+-.+.++|+++..
T Consensus 245 ~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 245 RAVMACGVLHNVFT 258 (684)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhh
Confidence 56678889988753
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.75 E-value=0.0022 Score=55.71 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=105.8
Q ss_pred ccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 046820 106 DNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELV 185 (350)
Q Consensus 106 ~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls 185 (350)
..+.++.|+.+|. ++ +..++..|+..|.. +. .+..++.|+..|.+++...|..|+..|-.+.
T Consensus 17 ~~~~~~~L~~~L~---~~----~~~vR~~A~~~L~~-~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQ---DD----SYYVRRAAAYALGK-IG----------DERAVEPLIKALKDEDAWVRRAAADALGQIG 78 (211)
T ss_dssp CGGGHHHHHHHTT---CS----SHHHHHHHHHHHHH-HC----------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred CHhHHHHHHHHHc---CC----CHHHHHHHHHHHHH-hC----------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 3578999999996 32 47788999888872 22 2468999999999999999999988877653
Q ss_pred cCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHH
Q 046820 186 SSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVV 265 (350)
Q Consensus 186 ~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv 265 (350)
. +++++.|+++|.++ ++.....|+.+|..+. ....++.|+
T Consensus 79 -------------~-~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~-------------------------~~~~~~~L~ 118 (211)
T 3ltm_A 79 -------------D-ERAVEPLIKALKDE-DGWVRQSAAVALGQIG-------------------------DERAVEPLI 118 (211)
T ss_dssp -------------C-GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC-------------------------CGGGHHHHH
T ss_pred -------------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-------------------------cHHHHHHHH
Confidence 2 56788999999876 5555555555444432 234678888
Q ss_pred HHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 046820 266 KKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLM 333 (350)
Q Consensus 266 ~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l 333 (350)
+.+...++..+..|+.+|..+... .+++.|+.+++ +..+..|..|...|..+
T Consensus 119 ~~l~d~~~~vr~~a~~aL~~~~~~---------------~~~~~L~~~l~-d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 119 KALKDEDWFVRIAAAFALGEIGDE---------------RAVEPLIKALK-DEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCG---------------GGHHHHHHHTT-CSSHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHc-CCCHHHHHHHHHHHHHh
Confidence 877667778888888888777432 23444554443 33556666665555544
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.68 E-value=4.1e-06 Score=64.44 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=26.9
Q ss_pred cCC-ccccccccccccCCcccCCCCCCcccCCccc
Q 046820 17 EQP-ARKETGASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 17 ~~~-~~~~~~~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
++| ...--...++|+|||++. +|+||||.+|+
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~--cGhtf~r~~I~ 42 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLP--SGTVMDRSIIL 42 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECT--TSCEEEHHHHH
T ss_pred cCchheECcccCchhcCCeECC--CCCEECHHHHH
Confidence 345 344567889999999999 99999999998
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.67 E-value=0.0037 Score=56.77 Aligned_cols=30 Identities=7% Similarity=0.001 Sum_probs=19.7
Q ss_pred CCChHHHHHHHhccChhHHHHHHHHHHHHc
Q 046820 258 PLTMPVVVKKILRVSELATELSVSILWKLC 287 (350)
Q Consensus 258 ~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc 287 (350)
+..++.|++.+...++..+..|+..|..+.
T Consensus 158 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 158 KATIPLLINLLKDPNGDVRNWAAFAININK 187 (280)
T ss_dssp -CCHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 346777777766666666777777776664
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.61 E-value=6.4e-06 Score=65.44 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=27.6
Q ss_pred hcCC-ccccccccccccCCcccCCCCCCcccCCccc
Q 046820 16 KEQP-ARKETGASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 16 ~~~~-~~~~~~~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
.++| .+..-...++|+|||+++ +|+||||.+|+
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~--cGhtf~r~~I~ 57 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLP--SGTIMDRSIIL 57 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEET--TTEEEEHHHHH
T ss_pred ccCcHhhCCcCccCcccCCeECC--CCCEEchHHHH
Confidence 3455 345567889999999999 99999999998
No 49
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.61 E-value=0.0039 Score=53.70 Aligned_cols=153 Identities=16% Similarity=0.113 Sum_probs=103.2
Q ss_pred cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhc
Q 046820 107 NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVS 186 (350)
Q Consensus 107 aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~ 186 (350)
.+..+.++.+|. ++ +..++..|+..|. .+. ..+.++.|+..|.+++...|..|+..|..+.
T Consensus 13 ~~~~~~~i~~L~---~~----~~~vr~~A~~~L~-~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQ---DD----SYYVRRAAAYALG-KIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIG- 73 (201)
T ss_dssp HHHHHHHHHHTT---CS----CHHHHHHHHHHHH-HHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-
T ss_pred CcchHHHHHHhc---CC----CHHHHHHHHHHHH-hcC----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-
Confidence 356788888885 33 4778899988887 232 2357899999999999999999888876652
Q ss_pred CCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHH
Q 046820 187 SDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVK 266 (350)
Q Consensus 187 ~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~ 266 (350)
. +++++.|+.+|.++ ++.....|+.+|..+. ...+++.+++
T Consensus 74 ------------~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~-------------------------~~~~~~~L~~ 114 (201)
T 3ltj_A 74 ------------D-ERAVEPLIKALKDE-DGWVRQSAAVALGQIG-------------------------DERAVEPLIK 114 (201)
T ss_dssp ------------C-GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC-------------------------CGGGHHHHHH
T ss_pred ------------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-------------------------cHHHHHHHHH
Confidence 2 46789999999876 5555555555544431 2346788888
Q ss_pred HHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 046820 267 KILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLM 333 (350)
Q Consensus 267 ~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l 333 (350)
.+...++..+..|+.+|..+... .+++.|..++.. ..+..|..|...|..+
T Consensus 115 ~l~d~~~~vr~~a~~aL~~~~~~---------------~~~~~L~~~l~d-~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 115 ALKDEDWFVRIAAAFALGEIGDE---------------RAVEPLIKALKD-EDGWVRQSAADALGEI 165 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTCG---------------GGHHHHHHHTTC-SSHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 77666777788888888766431 234445444442 3456666665555544
No 50
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.56 E-value=7.4e-06 Score=87.64 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=28.6
Q ss_pred hhcCCcccc-ccccccccCCcccCCCCC-CcccCCccc
Q 046820 15 RKEQPARKE-TGASLIEKDPVTTTPRNG-ITYDRVNIL 50 (350)
Q Consensus 15 ~~~~~~~~~-~~~~eiM~DPVtl~~~TG-~TYDR~sIe 50 (350)
-.++|+.-. --+.+||+|||+++ || +||||++|+
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilp--sG~~TydR~~I~ 920 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILP--ASKMNIDRSTIK 920 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECT--TTCCEEEHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcC--CCCEEECHHHHH
Confidence 367787654 45679999999999 97 899999998
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.56 E-value=1.1e-05 Score=63.90 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=27.1
Q ss_pred cCC-ccccccccccccCCcccCCCCC-CcccCCccc
Q 046820 17 EQP-ARKETGASLIEKDPVTTTPRNG-ITYDRVNIL 50 (350)
Q Consensus 17 ~~~-~~~~~~~~eiM~DPVtl~~~TG-~TYDR~sIe 50 (350)
++| .+..-...++|+|||++. +| +||||..|+
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~--cG~htf~r~cI~ 51 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLP--SSRVTVDRSTIA 51 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECT--TTCCEEEHHHHH
T ss_pred cCcHhcCCcCccccccCCeECC--CCCeEECHHHHH
Confidence 445 355567899999999999 99 999999998
No 52
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.52 E-value=0.0017 Score=67.79 Aligned_cols=206 Identities=12% Similarity=0.072 Sum_probs=132.4
Q ss_pred chHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHH-HHHccCCHHHHHHHHHHHHHHhcC
Q 046820 109 AVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMI-WFLNSGDLSRRRNAVLLLTELVSS 187 (350)
Q Consensus 109 ai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv-~~L~~gs~~~r~~Aa~lL~~Ls~~ 187 (350)
.|.+++..|.+ + ++..++.|+.+|. +|.-+.+.++.+...+.+..++ .+|...+.+.|..|+.+|.+|+..
T Consensus 35 ~i~Pll~~L~S---~----~~~~r~~A~~al~-~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 35 KILPVLKDLKS---P----DAKSRTTAAGAIA-NIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp TTHHHHHHHSS---S----CCSHHHHHHHHHH-HHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCC---C----CHHHHHHHHHHHH-HHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 35556677762 2 3557899999999 7876667777777777877765 456667999999999999999865
Q ss_pred CCchhHHhhhhchhhHHHHHHHHhcCC---------CChHHHHHHHHHHHHhhhhHHHHHHHHHHHhC-CHhhHHHhhcC
Q 046820 188 DSDQRKVNVLSENEGAIEALFKLIEEP---------ISPTATKAALVVIYHTIASSASALSVLDGICS-TDCGRENANDK 257 (350)
Q Consensus 188 ~~~~~~~~~Ig~~~g~i~~LV~lL~~~---------~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~-~~eGr~ai~~~ 257 (350)
.. ++.+..+-+ .|++++|..+++.. ......+.....++.+. +.++.+|-.||. ..+...++. .
T Consensus 107 ~g-~d~~~~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~lL~~L~e~s~~~~~~v~-~ 180 (684)
T 4gmo_A 107 EE-ADFCVHLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDIT---GSLLVLIGLLALARDEIHEAVA-T 180 (684)
T ss_dssp SC-HHHHHHHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHH---HHHHHHHHHHHHHCHHHHHHHH-T
T ss_pred cC-chHHHHHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHH---HHHHHHHHHHHhCCHHHHHHHH-h
Confidence 43 466766645 89999999998631 00112223333344332 356667777775 345556664 5
Q ss_pred CCChHHHHHHHhccC---hhHHHHHHHHHHHHccccccchHHHHHHHHhhch--HHHHHHHHHhcCchHHHHHHHHHHHH
Q 046820 258 PLTMPVVVKKILRVS---ELATELSVSILWKLCMNEKREEKTAFVEALQVGA--FQKLLVLLQVGCAERTKEKASEVLKL 332 (350)
Q Consensus 258 ~~~v~~lv~~l~~~S---~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~--v~~LL~llq~~~t~~ak~kA~~LLk~ 332 (350)
.++++.++..+.... ..-...|...|+.++..+ ....+.....|. +-.++..+..+ ++..|.-+..+|..
T Consensus 181 ~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn----~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~N 255 (684)
T 4gmo_A 181 KQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDN----LKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHN 255 (684)
T ss_dssp CHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTC----HHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccC----HHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHh
Confidence 688999999886533 356778888888888754 446666665553 22233333333 23334555555554
Q ss_pred H
Q 046820 333 M 333 (350)
Q Consensus 333 l 333 (350)
+
T Consensus 256 i 256 (684)
T 4gmo_A 256 V 256 (684)
T ss_dssp H
T ss_pred H
Confidence 3
No 53
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.52 E-value=0.021 Score=51.69 Aligned_cols=119 Identities=9% Similarity=0.051 Sum_probs=64.1
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHH
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS 236 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~ 236 (350)
+.++.|+.+|++.+...|..|+..|..+... . +.+++.|+.++.++ ++.....|+.+|.++
T Consensus 159 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~-~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~------ 219 (280)
T 1oyz_A 159 ATIPLLINLLKDPNGDVRNWAAFAININKYD-----------N-SDIRDCFVEMLQDK-NEEVRIEAIIGLSYR------ 219 (280)
T ss_dssp CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-----------C-HHHHHHHHHHTTCS-CHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-----------c-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHh------
Confidence 3566666666666666666666666544211 1 34556666666544 333333333333222
Q ss_pred HHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh
Q 046820 237 ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV 316 (350)
Q Consensus 237 aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~ 316 (350)
. .+.+++.+++.+.... .+..|+.+|..+.. ..+++.|..+++.
T Consensus 220 --------~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---------------~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 220 --------K-----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD---------------KTLLPVLDTMLYK 263 (280)
T ss_dssp --------T-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---------------GGGHHHHHHHHTT
T ss_pred --------C-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---------------hhhhHHHHHHHhc
Confidence 1 3456788887775422 45666666655533 2357777777765
Q ss_pred cCchHHHHHHHHHH
Q 046820 317 GCAERTKEKASEVL 330 (350)
Q Consensus 317 ~~t~~ak~kA~~LL 330 (350)
...+....++.+.|
T Consensus 264 ~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 264 FDDNEIITSAIDKL 277 (280)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHh
Confidence 44455666654444
No 54
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.26 E-value=4.4e-05 Score=66.89 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=27.9
Q ss_pred hhcCCcccc-ccccccccCCcccCCCCCCcccCCccc
Q 046820 15 RKEQPARKE-TGASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 15 ~~~~~~~~~-~~~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
..++|+... --+.++|+|||+++ +|+||||.+|+
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~--~Ghtfer~~I~ 134 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITP--SGITYDRKDIE 134 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECT--TSCEEEHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeECC--CCCEECHHHHH
Confidence 445665443 45789999999999 99999999998
No 55
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.17 E-value=0.0089 Score=63.18 Aligned_cols=234 Identities=10% Similarity=0.120 Sum_probs=140.3
Q ss_pred CChhHHHHHHHHHHHHHhcCccccc--hhhc--cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhc
Q 046820 78 QDQVGCKDLVAKIKEWAKESESNKS--CIVD--NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHL 153 (350)
Q Consensus 78 ~~~~~~~~Al~~L~~Lak~s~~nR~--~i~~--aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i 153 (350)
++...+..++..|..++++.+..-. .+.. .+++|.|+.++. ++ +..++..|+.+|...+..... ...
T Consensus 140 ~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~---~~----~~~vR~~A~~aL~~~~~~~~~--~~~ 210 (852)
T 4fdd_A 140 EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK---HS----SPKIRSHAVACVNQFIISRTQ--ALM 210 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTT---CS----SHHHHHHHHHHHHTTTTTTCH--HHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhc---CC----CHHHHHHHHHHHHHHHhcccH--HHH
Confidence 4556677788888888876543210 1100 134455454443 22 477899999999833322211 111
Q ss_pred c-cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820 154 G-SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232 (350)
Q Consensus 154 ~-~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~ 232 (350)
. -...++.+...+..++.+.|..|+..|..|+.... +.....+ .++++.++.++++. ++.....|+..+..++.
T Consensus 211 ~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~-~~~~~~l---~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~ 285 (852)
T 4fdd_A 211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM-DRLLPHM---HNIVEYMLQRTQDQ-DENVALEACEFWLTLAE 285 (852)
T ss_dssp TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH-HHHGGGH---HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHH---HHHHHHHHHHccCC-cHHHHHHHHHHHHHHhc
Confidence 1 13578888888888899999999999999986532 1122222 57888899998875 66777888888887763
Q ss_pred hH----------HHHHHHH-----------------------------------------HHHhCCHhhHHHhhcCCCCh
Q 046820 233 SS----------ASALSVL-----------------------------------------DGICSTDCGRENANDKPLTM 261 (350)
Q Consensus 233 ~~----------e~aL~vL-----------------------------------------~~L~~~~eGr~ai~~~~~~v 261 (350)
.. ...+.+| ..|+..- | ..+. +..+
T Consensus 286 ~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~-~-~~~~--~~l~ 361 (852)
T 4fdd_A 286 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY-R-DELL--PHIL 361 (852)
T ss_dssp STTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH-G-GGGH--HHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc-c-HHHH--HHHH
Confidence 10 1222222 2222211 1 0110 1123
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 262 PVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 262 ~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
|.+.+.+...+...++.|+.+|..++...+ .... ..-.++++.|+..++ +..++.|..|...|..+..
T Consensus 362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~----~~~~-~~l~~~l~~l~~~l~-d~~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 362 PLLKELLFHHEWVVKESGILVLGAIAEGCM----QGMI-PYLPELIPHLIQCLS-DKKALVRSITCWTLSRYAH 429 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTTTTH----HHHG-GGHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcch----HHHH-HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 444444444567889999999999988653 1211 123456777776665 4478999988888876665
No 56
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.09 E-value=5.7e-05 Score=58.98 Aligned_cols=28 Identities=25% Similarity=0.200 Sum_probs=24.0
Q ss_pred cccccccccccCCccc-CCCCCCcccCCccc
Q 046820 21 RKETGASLIEKDPVTT-TPRNGITYDRVNIL 50 (350)
Q Consensus 21 ~~~~~~~eiM~DPVtl-~~~TG~TYDR~sIe 50 (350)
+.--..+++|+|||++ . .||||+|.+|+
T Consensus 8 ~~CPI~~~~~~dPV~~~~--cGh~f~r~cI~ 36 (94)
T 2yu4_A 8 FTCPITKEEMKKPVKNKV--CGHTYEEDAIV 36 (94)
T ss_dssp CBCTTTCSBCSSEEEESS--SCCEEEHHHHH
T ss_pred eECcCcCchhcCCEEcCC--CCCeecHHHHH
Confidence 3444578999999999 7 89999999998
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.80 E-value=0.00027 Score=64.93 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=27.7
Q ss_pred hcCCcccc-ccccccccCCcccCCCCCCcccCCccc
Q 046820 16 KEQPARKE-TGASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 16 ~~~~~~~~-~~~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
.++|+... .-..++|+|||+++ +||||+|.+|+
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~--~gh~f~~~~i~ 236 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITP--SGITYDRKDIE 236 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECS--SCCEEETTHHH
T ss_pred CCCCcccCCcCcCCHhcCCeECC--CCCEECHHHHH
Confidence 45665443 57889999999999 99999999998
No 58
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.79 E-value=0.062 Score=56.65 Aligned_cols=232 Identities=15% Similarity=0.084 Sum_probs=134.4
Q ss_pred CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC-CChhhH-hhcc-
Q 046820 78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP-LEGEAL-THLG- 154 (350)
Q Consensus 78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k-~~i~- 154 (350)
.+...+..+...+..+++....+. -.+++|.|+..+. ++ +..+++.++.+|..... ..+... ..+.
T Consensus 102 ~~~~vr~~~a~~i~~ia~~~~~~~----wp~ll~~L~~~l~---~~----~~~~r~~al~~L~~i~~~~~~~~~~~~~~~ 170 (852)
T 4fdd_A 102 SSPLIRATVGILITTIASKGELQN----WPDLLPKLCSLLD---SE----DYNTCEGAFGALQKICEDSAEILDSDVLDR 170 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTTT----CTTHHHHHHHHHS---CS----SHHHHHHHHHHHHHHHHHHTTHHHHCSSSS
T ss_pred CCHHHHHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHc---CC----CHHHHHHHHHHHHHHHHHhHHHhchhhhcc
Confidence 345566778888888887753221 2478899998885 22 35678888888873221 111100 0110
Q ss_pred -cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 046820 155 -SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS 233 (350)
Q Consensus 155 -~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~ 233 (350)
-...++.++..|++.+.+.|..|+..|..+..... ..... ...++++.|+.++.++ ++...+.|..+|..++..
T Consensus 171 ~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~-~~~~~---~~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 171 PLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT-QALML---HIDSFIENLFALAGDE-EPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp CHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC-HHHHT---SHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc-HHHHH---HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHh
Confidence 12356666666777789999999999988765432 12222 2368999999999876 677888899999888642
Q ss_pred H---------------------------HHHHHHHHHHhCCHhhHHHhhcC-CCChHHHHHHHh---------ccC----
Q 046820 234 S---------------------------ASALSVLDGICSTDCGRENANDK-PLTMPVVVKKIL---------RVS---- 272 (350)
Q Consensus 234 ~---------------------------e~aL~vL~~L~~~~eGr~ai~~~-~~~v~~lv~~l~---------~~S---- 272 (350)
. ..|+..+..++.....+..+... ...+|.+++.|. +..
T Consensus 246 ~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed 325 (852)
T 4fdd_A 246 RMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG 325 (852)
T ss_dssp CHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence 0 25566666666543333322100 022455555441 011
Q ss_pred ---------hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820 273 ---------ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMN 334 (350)
Q Consensus 273 ---------~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~ 334 (350)
...+..|+.+|-.++...++ ... ..+++.+...+++. .++.|+-|...|..+.
T Consensus 326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-----~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~ 387 (852)
T 4fdd_A 326 SGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-----PHILPLLKELLFHH-EWVVKESGILVLGAIA 387 (852)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHGG---GGH-----HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTT
T ss_pred cccccccccchHHHHHHHHHHHHHHhccH---HHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 12255677777777765431 111 12455555555543 5777777666665554
No 59
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.75 E-value=0.073 Score=54.10 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=131.3
Q ss_pred HHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh
Q 046820 68 NSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG 147 (350)
Q Consensus 68 v~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~ 147 (350)
+..+.......++..+..|+..+..+.+.+++ .+.+.|++|.|..+|. +. ++.++..|+.+|.. +...+
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~---d~----d~~V~~~A~~aL~~-i~~~~ 191 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIA---DS----NPMVVANAVAALSE-ISESH 191 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTS---CS----CHHHHHHHHHHHHH-HTTSC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhC---CC----ChhHHHHHHHHHHH-HHhhC
Confidence 33343333335677788899999999886543 4445688899999885 22 47788999888873 32111
Q ss_pred -hh----------Hhhcc---c------------------------CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCC-
Q 046820 148 -EA----------LTHLG---S------------------------ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSD- 188 (350)
Q Consensus 148 -e~----------k~~i~---~------------------------~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~- 188 (350)
+. ..++. + ...++.+...|++.+...+..|+.++..+....
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 10 01110 0 124555555566677788889999999886311
Q ss_pred CchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh----------------------HHHHHHHHHHHhC
Q 046820 189 SDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS----------------------SASALSVLDGICS 246 (350)
Q Consensus 189 ~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~----------------------~e~aL~vL~~L~~ 246 (350)
.+++....+ ...+.+.|+.++. .++..+..|+.+|..++.. ...++.+|..++.
T Consensus 272 ~~~~~~~~~--~~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~ 347 (591)
T 2vgl_B 272 KDSDYYNML--LKKLAPPLVTLLS--GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLAS 347 (591)
T ss_dssp BTTBSHHHH--HHHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHH--HHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCC
Confidence 001222222 1466788887775 3677788889998888641 1467777777665
Q ss_pred CHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHH
Q 046820 247 TDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKA 326 (350)
Q Consensus 247 ~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA 326 (350)
.. +...+ ++.+.+.+......-+..++..+..+|...++ . ....++.|+.++...+ +..+..+
T Consensus 348 ~~-nv~~i------v~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~----~-----~~~~v~~Ll~ll~~~~-~~v~~e~ 410 (591)
T 2vgl_B 348 QA-NIAQV------LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ----S-----AERCVSTLLDLIQTKV-NYVVQEA 410 (591)
T ss_dssp SS-THHHH------HHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH----H-----HHHHHHHHHHHHHTCC-HHHHHHH
T ss_pred hh-hHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh----H-----HHHHHHHHHHHHcccc-hHHHHHH
Confidence 32 22211 23333333344556677777777777765431 1 1224555565555443 3334433
Q ss_pred H
Q 046820 327 S 327 (350)
Q Consensus 327 ~ 327 (350)
.
T Consensus 411 i 411 (591)
T 2vgl_B 411 I 411 (591)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.46 E-value=0.085 Score=50.40 Aligned_cols=247 Identities=9% Similarity=0.031 Sum_probs=140.0
Q ss_pred HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhc--cCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820 64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVD--NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL 141 (350)
Q Consensus 64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~--aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~ 141 (350)
+..++..+.+.. .++..+..++..|..++++.... .+.. ..+++.++.+|. +. +.+..++..|+.+|..
T Consensus 130 l~~L~~~l~~~~--~~~~~r~~al~~l~~l~~~~~~~--~~~~~~~~ll~~l~~~l~---~~--~~~~~vr~~a~~~l~~ 200 (462)
T 1ibr_B 130 IPQLVANVTNPN--STEHMKESTLEAIGYICQDIDPE--QLQDKSNEILTAIIQGMR---KE--EPSNNVKLAATNALLN 200 (462)
T ss_dssp HHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHHSCGG--GTGGGHHHHHHHHHHHHS---TT--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCC--CCHHHHHHHHHHHHHHHHhCCch--hhHhHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHH
Confidence 445555554420 05567778999999999864211 1111 135666666664 21 1146788999999874
Q ss_pred hCCCChhhHh-hcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchh-hHHHHHHHHhcCCCChHH
Q 046820 142 LFPLEGEALT-HLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENE-GAIEALFKLIEEPISPTA 219 (350)
Q Consensus 142 ~Ls~~~e~k~-~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~-g~i~~LV~lL~~~~~~~a 219 (350)
.+..-+++-. .....-.++.+...+.+.+.+.|..++.+|..+..... +.....+ . ++++.++..+++. ++..
T Consensus 201 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~~~~~~---~~~l~~~~~~~~~~~-~~~v 275 (462)
T 1ibr_B 201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY-QYMETYM---GPALFAITIEAMKSD-IDEV 275 (462)
T ss_dssp HTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGCTTTT---TTTHHHHHHHHHHCS-SHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHcCC-chHH
Confidence 3433221110 00001135556666666789999999999999975431 1122223 4 7778777777765 5556
Q ss_pred HHHHHHHHHHhhhhH-------------------------------------------------------HHHHHHHHHH
Q 046820 220 TKAALVVIYHTIASS-------------------------------------------------------ASALSVLDGI 244 (350)
Q Consensus 220 ~k~Al~aL~~L~~~~-------------------------------------------------------e~aL~vL~~L 244 (350)
...|+..+..++... ..|..+|..|
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l 355 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence 667777666665321 1222222222
Q ss_pred hCCHhhHHHhhcCCCChHHHHH----HHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCch
Q 046820 245 CSTDCGRENANDKPLTMPVVVK----KILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAE 320 (350)
Q Consensus 245 ~~~~eGr~ai~~~~~~v~~lv~----~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~ 320 (350)
+..- ....++.++. .+...+...++.|+.+|..++..... ...... -..+++.|+..++. ..+
T Consensus 356 ~~~~--------~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~---~~~~~~-l~~~~~~l~~~l~d-~~~ 422 (462)
T 1ibr_B 356 ATCC--------EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP---SQLKPL-VIQAMPTLIELMKD-PSV 422 (462)
T ss_dssp HHHT--------TTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT---TTTCTT-TTTHHHHHHHGGGC-SCH
T ss_pred HHhc--------cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH---HHHHHH-HHHHHHHHHHHhcC-CCH
Confidence 2211 0122333333 33334567889999999999874321 111111 14567777766664 468
Q ss_pred HHHHHHHHHHHHHHhcc
Q 046820 321 RTKEKASEVLKLMNLHR 337 (350)
Q Consensus 321 ~ak~kA~~LLk~l~~~~ 337 (350)
+.|..|...|..+....
T Consensus 423 ~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 423 VVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999998887743
No 61
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.13 E-value=0.35 Score=47.68 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=62.9
Q ss_pred hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhh
Q 046820 63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL 142 (350)
Q Consensus 63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~ 142 (350)
.+..++..+.+ ++...+..|++.|..++..-...+. ...++|.|...+ + .+.+++..+...|. .
T Consensus 11 ~i~~l~~~l~s----~~~~~R~~A~~~l~~i~~~~~~~~~---~~~l~~~L~~~~----d----~~~~vr~~~~~~L~-~ 74 (588)
T 1b3u_A 11 PIAVLIDELRN----EDVQLRLNSIKKLSTIALALGVERT---RSELLPFLTDTI----Y----DEDEVLLALAEQLG-T 74 (588)
T ss_dssp HHHHHHHHTTC----SCHHHHHHHHHTHHHHHHHSCHHHH---HHTHHHHHHHTC----C----CCHHHHHHHHHHHT-T
T ss_pred cHHHHHHHhhc----ccHHHHHHHHHhHHHHHHHhCHHHH---HHHHHHHHHHhc----C----CcHHHHHHHHHHHH-H
Confidence 36677777776 4667778899888887754221110 012345544322 1 23567777777776 3
Q ss_pred CC--CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCC
Q 046820 143 FP--LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSD 188 (350)
Q Consensus 143 Ls--~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~ 188 (350)
+. ++.. . .....++.|..++...+...|..|+..|..+....
T Consensus 75 ~~~~~~~~--~--~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~ 118 (588)
T 1b3u_A 75 FTTLVGGP--E--YVHCLLPPLESLATVEETVVRDKAVESLRAISHEH 118 (588)
T ss_dssp CSGGGTSG--G--GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTS
T ss_pred HHhccCcH--H--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHC
Confidence 32 1110 0 01235666666666778888999998888887543
No 62
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.99 E-value=0.72 Score=45.32 Aligned_cols=210 Identities=12% Similarity=0.067 Sum_probs=117.3
Q ss_pred ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC-CChhhHhhcccCC
Q 046820 79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP-LEGEALTHLGSAS 157 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k~~i~~~~ 157 (350)
+...+..|...|..++...+.+ .+ ..-++|.+..+.. ++ +...++.|..+|..... .++..+ ..
T Consensus 100 ~~~vR~~a~~~L~~l~~~~~~~--~~-~~~l~~~l~~l~~---~~----~~~~R~~a~~~l~~~~~~~~~~~~-----~~ 164 (588)
T 1b3u_A 100 ETVVRDKAVESLRAISHEHSPS--DL-EAHFVPLVKRLAG---GD----WFTSRTSACGLFSVCYPRVSSAVK-----AE 164 (588)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHH--HH-HHTHHHHHHHHHT---CS----SHHHHHHHGGGHHHHTTTSCHHHH-----HH
T ss_pred hHHHHHHHHHHHHHHHHHCCHH--HH-HHHHHHHHHHHhc---CC----CcHHHHHHHHHHHHHHHhcCHHHH-----HH
Confidence 4455666777777777654331 11 1123444444442 11 34456666655552122 122211 23
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA 237 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a 237 (350)
.++.+..++...+.+.|..|+..|..+..... . . .. .+.+++.|..++.++ ++.-.+.|+.+|..++...
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~--~-~-~~--~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~--- 234 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE--L-D-NV--KSEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLL--- 234 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC--H-H-HH--HHTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHS---
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--H-H-hH--HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhC---
Confidence 46666777777788888888888888875432 1 1 11 256778888888765 4445555566655554210
Q ss_pred HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhc
Q 046820 238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVG 317 (350)
Q Consensus 238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~ 317 (350)
. ++ .+ ....+|.+.+.+...+...+..|+.+|..++...++ +......++.++.+++ +
T Consensus 235 --------~-~~---~~--~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-------~~~~~~l~~~l~~~l~-d 292 (588)
T 1b3u_A 235 --------P-QE---DL--EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-------EITKTDLVPAFQNLMK-D 292 (588)
T ss_dssp --------C-HH---HH--HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-------HHHHHTHHHHHHHHHT-C
T ss_pred --------C-HH---HH--HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-------ccchhHHHHHHHHHhC-C
Confidence 0 11 11 112356666666556677788898888888875321 1123345666666665 4
Q ss_pred CchHHHHHHHHHHHHHHh
Q 046820 318 CAERTKEKASEVLKLMNL 335 (350)
Q Consensus 318 ~t~~ak~kA~~LLk~l~~ 335 (350)
..+..|+.|..-|..+..
T Consensus 293 ~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 293 CEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 467788887776666554
No 63
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.73 E-value=0.039 Score=56.15 Aligned_cols=217 Identities=14% Similarity=0.142 Sum_probs=126.8
Q ss_pred chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820 62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL 141 (350)
Q Consensus 62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~ 141 (350)
.++.++-+.|.+ ++...+.+++.+|-.+---+.. . ..+.+.++.++. ++ +.....-+.-.+.
T Consensus 13 ~e~~~i~~~L~~----~~~~~k~~~~~kli~~~~~G~d-----~-~~~~~~vi~l~~---s~----~~~~Krl~yl~l~- 74 (591)
T 2vgl_B 13 GEIFELKAELNN----EKKEKRKEAVKKVIAAMTVGKD-----V-SSLFPDVVNCMQ---TD----NLELKKLVYLYLM- 74 (591)
T ss_dssp SHHHHHHHHTTS----SCHHHHHHHHHHHHHHHHTTCC-----C-GGGHHHHHHTTS---SS----CHHHHHHHHHHHH-
T ss_pred ChHHHHHHHHcC----CCHHHHHHHHHHHHHHHHCCCC-----h-HHHHHHHHHHhC---CC----CHHHHHHHHHHHH-
Confidence 456666666665 3567788888888765433321 1 134556666654 22 2343333322222
Q ss_pred hCC-CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHH
Q 046820 142 LFP-LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTAT 220 (350)
Q Consensus 142 ~Ls-~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~ 220 (350)
++. .+.|.. . -.++.+.+-|.+.++..|..|...|.++.. ++ + .+.+++.+.+++.++ ++.-.
T Consensus 75 ~~~~~~~e~~-~----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~----~~----~--~~~l~~~l~~~L~d~-~~~VR 138 (591)
T 2vgl_B 75 NYAKSQPDMA-I----MAVNSFVKDCEDPNPLIRALAVRTMGCIRV----DK----I--TEYLCEPLRKCLKDE-DPYVR 138 (591)
T ss_dssp HHHHHSHHHH-H----TTHHHHGGGSSSSSHHHHHHHHHHHHTCCS----GG----G--HHHHHHHHHHHSSCS-CHHHH
T ss_pred HHcccCchHH-H----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCh----HH----H--HHHHHHHHHHHcCCC-ChHHH
Confidence 221 111211 1 246677777888889999888766665531 12 2 156778899999876 78888
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHH
Q 046820 221 KAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVE 300 (350)
Q Consensus 221 k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~ 300 (350)
+.|..+|++++..+ ++ .+ .+++.++.+.+.+...++....+|+.+|..+|...+.. ...
T Consensus 139 k~A~~al~~i~~~~-------------p~---~~-~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~----~~~ 197 (591)
T 2vgl_B 139 KTAAVCVAKLHDIN-------------AQ---MV-EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS----NLL 197 (591)
T ss_dssp HHHHHHHHHHHHSS-------------CC---CH-HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC----CSC
T ss_pred HHHHHHHHHHHhhC-------------hh---hc-ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc----cch
Confidence 88888888886421 11 11 12234567777665566788999999999999875420 000
Q ss_pred HHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhcc
Q 046820 301 ALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHR 337 (350)
Q Consensus 301 ~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~ 337 (350)
.+..+.+.+|+..+. ++++-.+-+ +|+++..+.
T Consensus 198 ~l~~~~~~~Ll~~l~-~~~~~~q~~---il~~l~~l~ 230 (591)
T 2vgl_B 198 DLNPQNINKLLTALN-ECTEWGQIF---ILDCLSNYN 230 (591)
T ss_dssp CCHHHHHHHHHHHHH-HCCHHHHHH---HHHHHHTSC
T ss_pred hccHHHHHHHHHcCC-CCCchHHHH---HHHHHHHhC
Confidence 012344666666554 456666665 666666544
No 64
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.58 E-value=0.37 Score=52.91 Aligned_cols=248 Identities=8% Similarity=0.008 Sum_probs=148.9
Q ss_pred cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820 61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI 140 (350)
Q Consensus 61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~ 140 (350)
+.++..++.++.++ |...+..|...|....+.+...-.--....+++.|+..|. +. +..++..|+.+|.
T Consensus 5 ~~~l~~lL~~l~s~----d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~---d~----~~~vR~~A~~~L~ 73 (1230)
T 1u6g_C 5 SYHISNLLEKMTSS----DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---DK----NGEVQNLAVKCLG 73 (1230)
T ss_dssp CHHHHHHHHHTTCS----SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---CS----SHHHHHHHHHHHH
T ss_pred HhHHHHHHHhcCCC----CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc---CC----CHHHHHHHHHHHH
Confidence 45677788887764 5677888989988776543110000011245667777664 22 4778888888776
Q ss_pred hhCC-CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchh-----HHhhhhchhhHHHHHHHHhcCC
Q 046820 141 LLFP-LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQR-----KVNVLSENEGAIEALFKLIEEP 214 (350)
Q Consensus 141 ~~Ls-~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~-----~~~~Ig~~~g~i~~LV~lL~~~ 214 (350)
.+.. ++++.. ...++.+...|.+.+...|..|+..|..++.... +. ..... .+.+++.|++.+.+.
T Consensus 74 ~l~~~~~~~~~-----~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~-~~~~~~~~~~~~--~~~llp~L~~~l~~~ 145 (1230)
T 1u6g_C 74 PLVSKVKEYQV-----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELP-PASSGSALAANV--CKKITGRLTSAIAKQ 145 (1230)
T ss_dssp HHHTTSCHHHH-----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------CCTHHHH--HHHHHHHHHHHHSCC
T ss_pred HHHHhCCHHHH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC-CcccccchHHHH--HHHHHHHHHHHHcCC
Confidence 2222 232221 1246677777777777889989998888875432 11 01111 368999999999854
Q ss_pred CChHHHHHHHHHHHHhhhh---------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHH
Q 046820 215 ISPTATKAALVVIYHTIAS---------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKK 267 (350)
Q Consensus 215 ~~~~a~k~Al~aL~~L~~~---------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~ 267 (350)
.++.....|+.+|..++.. .+.|+.+|..++..... .+ -...++.++..
T Consensus 146 ~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~--~~~~l~~l~~~ 221 (1230)
T 1u6g_C 146 EDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IV--FVDLIEHLLSE 221 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HH--HHHHHHHHHHH
Confidence 4677888899999988731 14677777777764321 12 12357778877
Q ss_pred HhccC-hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhcc
Q 046820 268 ILRVS-ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHR 337 (350)
Q Consensus 268 l~~~S-~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~ 337 (350)
+.... ...+..|+.+|..++...+. .... .-...++.++..++. ..+..|+.|.+.+..+....
T Consensus 222 L~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~-~l~~l~~~ll~~l~d-~~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 222 LSKNDSMSTTRTYIQCIAAISRQAGH----RIGE-YLEKIIPLVVKFCNV-DDDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp HHHTCSSCSCTTHHHHHHHHHHHSSG----GGTT-SCTTHHHHHHHHHSS-CCTTTHHHHHHHHHHHHHCT
T ss_pred hccCCchhHHHHHHHHHHHHHHHhHH----HHHH-HHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHC
Confidence 76543 23445567777777764431 0000 013456666666653 35677888777777666543
No 65
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.42 E-value=1.8 Score=40.90 Aligned_cols=159 Identities=7% Similarity=0.016 Sum_probs=93.7
Q ss_pred CCcHHHHHHHHccC--CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCC-ChHHHHHHHHHHHHhhh
Q 046820 156 ASSMGCMIWFLNSG--DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPI-SPTATKAALVVIYHTIA 232 (350)
Q Consensus 156 ~~~l~~Lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~-~~~a~k~Al~aL~~L~~ 232 (350)
++.++.|+..+.++ +...|..|+.+|..+..... +...... .+.+++.|+..+.+.. ++.-...|+.++.++..
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-GGGTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC-chhhHhH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 45789999999998 89999999999999985321 1111111 2578899999998763 56666778888877643
Q ss_pred hHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHH
Q 046820 233 SSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLV 312 (350)
Q Consensus 233 ~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~ 312 (350)
.-+.. + . ...... ..++.+.+.+....+..+..++.+|..++...+. .....+...+++.++.
T Consensus 204 ~~~~~------~-~-~~~~~~-----~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~----~~~~~~~~~l~~~~~~ 266 (462)
T 1ibr_B 204 FTKAN------F-D-KESERH-----FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ----YMETYMGPALFAITIE 266 (462)
T ss_dssp TTHHH------H-T-SHHHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG----GCTTTTTTTHHHHHHH
T ss_pred HHHHh------h-h-hhHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 21100 0 0 000000 0134444333334556678888888888765432 1111111144554444
Q ss_pred HHHhcCchHHHHHHHHHHHHHHh
Q 046820 313 LLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 313 llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
.++ +-.+..+..|-+.+..+..
T Consensus 267 ~~~-~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 267 AMK-SDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHH-CSSHHHHHHHHHHHHHHHH
T ss_pred HHc-CCchHHHHHHHHHHHHHHH
Confidence 444 3367788888777766654
No 66
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.31 E-value=2.8 Score=43.26 Aligned_cols=229 Identities=10% Similarity=-0.043 Sum_probs=130.8
Q ss_pred cchHHHHHHHh-HhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHH
Q 046820 61 SVEVLEINSKI-KTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTL 139 (350)
Q Consensus 61 ~~~v~~lv~~l-~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L 139 (350)
+.++..++..+ .+ .|.+.+.+|-..|..+.+.+ ..|+.+.|+.++.. ++ .+..++.-|.-.|
T Consensus 3 ~~~l~~~L~~~~~s----~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~l~~il~~--~~---~~~~vR~~A~~~l 65 (861)
T 2bpt_A 3 TAEFAQLLENSILS----PDQNIRLTSETQLKKLSNDN--------FLQFAGLSSQVLID--EN---TKLEGRILAALTL 65 (861)
T ss_dssp HHHHHHHHHHHHHC----SSHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHTC--TT---SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccC----cCHHHHHHHHHHHHHHHhhC--------HHHHHHHHHHHHhC--CC---CChHHHHHHHHHH
Confidence 34556666665 54 35677888998998876542 24678888888852 11 1355666665555
Q ss_pred HhhCC------------------CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchh
Q 046820 140 ILLFP------------------LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENE 201 (350)
Q Consensus 140 ~~~Ls------------------~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~ 201 (350)
- ++- ++++.|. ..-+.++..|.+.+...|..++.+|-.++.. ++.. +.-+
T Consensus 66 k-~~i~~~w~~~~~~~~~~~~~~l~~~~~~-----~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~----~~p~--~~w~ 133 (861)
T 2bpt_A 66 K-NELVSKDSVKTQQFAQRWITQVSPEAKN-----QIKTNALTALVSIEPRIANAAAQLIAAIADI----ELPH--GAWP 133 (861)
T ss_dssp H-TTTCCSSHHHHHHHHHHHHHHSCHHHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----HGGG--TCCH
T ss_pred H-hhccCcChHHHHHHHHhHhhhCCHHHHH-----HHHHHHHHHHCCCchHHHHHHHHHHHHHHHh----hCcc--cccH
Confidence 5 441 2222222 2345777888888888899999999888743 1111 1237
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcC-CCChHHHHHHHhcc--ChhHHHH
Q 046820 202 GAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDK-PLTMPVVVKKILRV--SELATEL 278 (350)
Q Consensus 202 g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~-~~~v~~lv~~l~~~--S~~~~E~ 278 (350)
++++.|++.+.++.++..+..|+.+|..++..-. ++-+ .+..+ ...++.++..+... ++..+..
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~------------~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~ 200 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESAD------------PQSQ-ALVSSSNNILIAIVQGAQSTETSKAVRLA 200 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS------------TTSS-TTGGGHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC------------hhhh-HHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 8999999999875456666667777766653100 0000 00000 11234444444443 5667788
Q ss_pred HHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 279 SVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 279 Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
|+.+|..+..+..+ ...........++.|...++.+ .+..|+.|.+.|..+-.
T Consensus 201 al~~l~~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~ 253 (861)
T 2bpt_A 201 ALNALADSLIFIKN---NMEREGERNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMS 253 (861)
T ss_dssp HHHHHHHHGGGCHH---HHTSHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HccChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 88888887654321 0100111122444444444433 57788887777765554
No 67
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.35 Score=43.64 Aligned_cols=192 Identities=8% Similarity=0.076 Sum_probs=120.0
Q ss_pred HHHHhHhhhccCChhHHHHHHHHHHH-HHhcCccccchh---hc-cCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820 67 INSKIKTACETQDQVGCKDLVAKIKE-WAKESESNKSCI---VD-NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL 141 (350)
Q Consensus 67 lv~~l~~~~~~~~~~~~~~Al~~L~~-Lak~s~~nR~~i---~~-aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~ 141 (350)
+-..+.+ .+-.++.+|+.+|.. +...++ +.+ .+ ..++..|...+. . +.+..+++.|+.+|.
T Consensus 21 f~~~l~s----~~w~eRk~al~~L~~~~~~~~~---~i~~~~~~~~~~~~~L~~~l~---~---D~n~~v~~~A~~al~- 86 (249)
T 2qk1_A 21 FQERITS----SKWKDRVEALEEFWDSVLSQTK---KLKSTSQNYSNLLGIYGHIIQ---K---DANIQAVALAAQSVE- 86 (249)
T ss_dssp HHHHHTC----SSHHHHHHHHHHHHHHTGGGCC---CBCCTTCCCHHHHHHHHHHHH---H---CSCHHHHHHHHHHHH-
T ss_pred HHHHhhc----CCHHHHHHHHHHHHHHHHhcCC---ccccCcccHHHHHHHHHHHhc---c---CCCHHHHHHHHHHHH-
Confidence 3444544 356889999999999 875432 222 11 134556666662 1 235667788888887
Q ss_pred hCCCChhhH-hhcc-c--CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh
Q 046820 142 LFPLEGEAL-THLG-S--ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP 217 (350)
Q Consensus 142 ~Ls~~~e~k-~~i~-~--~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~ 217 (350)
.|+ ...+ ..+. . ...++.++..++......+..|..+|..+....+ ..... +....+++.|+..|+++ ++
T Consensus 87 ~la--~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~--~~~~~-~~l~~ll~~l~~~l~~k-~~ 160 (249)
T 2qk1_A 87 LIC--DKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD--PLASS-GRNEDMLKDILEHMKHK-TP 160 (249)
T ss_dssp HHH--HHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC--TTCTT-CTTHHHHHHHHHHTTCS-SH
T ss_pred HHH--HhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc--ccccC-CcHHHHHHHHHHHHcCC-Ch
Confidence 343 1111 1221 1 2367888888888788888888888888875321 11111 11257899999999877 67
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhc--CCCChHHHHHHHhccChhHHHHHHHHHHHHccccc
Q 046820 218 TATKAALVVIYHTIASSASALSVLDGICSTDCGRENAND--KPLTMPVVVKKILRVSELATELSVSILWKLCMNEK 291 (350)
Q Consensus 218 ~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~--~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~ 291 (350)
+.+..++.+|..++... ...-..+.. ....+|.+.+.|....+..++.|..+|..+|+.-|
T Consensus 161 ~vk~~al~~l~~~~~~~-------------~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEE-------------KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp HHHHHHHHHHHHHHHHC-------------CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHc-------------CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 77777777776665311 000011211 24668888888877788899999999999998654
No 68
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=95.02 E-value=0.53 Score=44.79 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=95.5
Q ss_pred chHHHHHHHhHhhhccCChhHHHHHHHHHHH-HHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820 62 VEVLEINSKIKTACETQDQVGCKDLVAKIKE-WAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI 140 (350)
Q Consensus 62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~-Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~ 140 (350)
.++..++.+|.++ +..++..++..|+. +.++.+.-..+|...| +..|+.+.. .+ +...+.-+|++|.
T Consensus 118 ~ra~~iiekL~~~----~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~G-L~~Li~vi~---~~----~gN~q~Y~L~AL~ 185 (339)
T 3dad_A 118 VRVNAILEKLYSS----SGPELRRSLFSLKQIFQEDKDLVPEFVHSEG-LSCLIRVGA---AA----DHNYQSYILRALG 185 (339)
T ss_dssp HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTH-HHHHHHHHT---TS----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CcHHHHHHHHHHHHHhhcchHHHHHHHHhcc-HHHHHHHHH---hc----ChHHHHHHHHHHH
Confidence 5788899999863 46788999999998 6666666666666555 899999886 22 3557888999998
Q ss_pred hhCCCChhhH-hhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhch-------h--hHHHHHHHH
Q 046820 141 LLFPLEGEAL-THLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSEN-------E--GAIEALFKL 210 (350)
Q Consensus 141 ~~Ls~~~e~k-~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~-------~--g~i~~LV~l 210 (350)
.++. ....- .++..+.+|..|+.++.+.....-..|..+|+.+....+ .+...+-.. . --+..||.+
T Consensus 186 ~LM~-~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se--~~~~lv~~av~~v~~~~~~~p~~~Lv~~ 262 (339)
T 3dad_A 186 QLML-FVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE--NNAPLFIRAVNSVASTTGAPPWANLVSI 262 (339)
T ss_dssp HHTT-SHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHCCCTTHHHHHH
T ss_pred HHHh-ccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc--ccchHHHHHHHHhhhccCCCcHHHHHHH
Confidence 5444 43343 344567899999999997777777789999999975532 233232110 0 126689999
Q ss_pred hc
Q 046820 211 IE 212 (350)
Q Consensus 211 L~ 212 (350)
|.
T Consensus 263 L~ 264 (339)
T 3dad_A 263 LE 264 (339)
T ss_dssp HT
T ss_pred Hh
Confidence 97
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.70 E-value=0.7 Score=40.72 Aligned_cols=131 Identities=15% Similarity=0.182 Sum_probs=83.1
Q ss_pred ChhHHHHHHHHHHHHHhcCccccchhhc--cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccC
Q 046820 79 DQVGCKDLVAKIKEWAKESESNKSCIVD--NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSA 156 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~--aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~ 156 (350)
+...+..|+..|..+++.-.. .+.. .-++|.|+..+. +. +..+++.|..+|...+.... . .
T Consensus 70 ~~~V~~~a~~~l~~la~~l~~---~~~~~~~~ilp~ll~~l~---d~----~~~vr~~a~~aL~~~~~~~~-~------~ 132 (242)
T 2qk2_A 70 NVVLVAMAGKCLALLAKGLAK---RFSNYASACVPSLLEKFK---EK----KPNVVTALREAIDAIYASTS-L------E 132 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHHGGG---CC----CHHHHHHHHHHHHHHHTTSC-H------H
T ss_pred CHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHc---CC----CHHHHHHHHHHHHHHHHcCC-H------H
Confidence 455566788888888854211 1111 124555555553 32 46678888777773222110 0 2
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchh--HHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQR--KVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTI 231 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~--~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~ 231 (350)
..++.+...|++.++..|..++..|-.+..... +. ....+ +.+++.|+.++.|. ++...+.|..+|..++
T Consensus 133 ~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~-~~~~~~~~l---~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 133 AQQESIVESLSNKNPSVKSETALFIARALTRTQ-PTALNKKLL---KLLTTSLVKTLNEP-DPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC-GGGCCHHHH---HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC-CCCccHHHH---HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHH
Confidence 367888888998899999999999999654321 11 12223 67999999999876 5666777777777665
No 70
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.61 E-value=0.1 Score=41.87 Aligned_cols=88 Identities=18% Similarity=0.100 Sum_probs=65.4
Q ss_pred chHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCC
Q 046820 109 AVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSD 188 (350)
Q Consensus 109 ai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~ 188 (350)
.++.|+.+|. +. +..++..|+.+|. .+. ...+++.|+..|+..+...|..|+..|-.+.
T Consensus 43 ~~~~L~~~L~---d~----~~~vR~~A~~aL~-~~~----------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--- 101 (131)
T 1te4_A 43 AFEPLLESLS---NE----DWRIRGAAAWIIG-NFQ----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG--- 101 (131)
T ss_dssp THHHHHHGGG---CS----CHHHHHHHHHHHG-GGC----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHc---CC----CHHHHHHHHHHHH-hcC----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence 4688888885 32 4778999988887 343 2346899999999889999999998887653
Q ss_pred CchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 046820 189 SDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYH 229 (350)
Q Consensus 189 ~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~ 229 (350)
. +++++.|+.+++++ ++.....|..+|.+
T Consensus 102 ----------~-~~a~~~L~~~l~d~-~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 102 ----------G-ERVRAAMEKLAETG-TGFARKVAVNYLET 130 (131)
T ss_dssp ----------S-HHHHHHHHHHTTSC-CTHHHHHHHHHGGG
T ss_pred ----------c-HHHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2 56788999999865 55666666666543
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.55 E-value=1.1 Score=39.53 Aligned_cols=162 Identities=12% Similarity=0.070 Sum_probs=105.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhc-CCCChHHHHHHHHHHHHhhhh------
Q 046820 161 CMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE-EPISPTATKAALVVIYHTIAS------ 233 (350)
Q Consensus 161 ~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~-~~~~~~a~k~Al~aL~~L~~~------ 233 (350)
.+...+.+.++..|..|+..|..+....+ ... -+....+++.|..++. +. +......|+.+|..|+..
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~--~~~--~~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHP--KLE--NGEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCS--SBC--CCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCC--CCC--CCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHH
Confidence 36667788899999999999999975421 111 1233578889999995 65 778889999999988732
Q ss_pred ---------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcccccc
Q 046820 234 ---------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKR 292 (350)
Q Consensus 234 ---------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~ 292 (350)
.+.+..+|..++.+. +-. ..++.+...+...++..++.++..|..+....++
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-~~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-SLE------AQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-CHH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-CHH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 135666666665532 111 1245555555556788999999999995443211
Q ss_pred chHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccC
Q 046820 293 EEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRD 338 (350)
Q Consensus 293 ~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~ 338 (350)
. .....-+ ...++.|+..+. +..+..|..|.+.|-.+.....
T Consensus 167 ~--~~~~~~l-~~l~p~l~~~l~-D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 167 T--ALNKKLL-KLLTTSLVKTLN-EPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp G--GCCHHHH-HHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHC
T ss_pred C--CccHHHH-HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHcC
Confidence 1 0001111 135666666665 5578999999999888776543
No 72
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.53 E-value=2.9 Score=42.51 Aligned_cols=133 Identities=13% Similarity=0.151 Sum_probs=82.2
Q ss_pred ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCc
Q 046820 79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASS 158 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~ 158 (350)
++-.+...++-|+.++..++... ..+.+.|..++....... ..+..+.-+++.++. .+..+++.+. .+
T Consensus 247 ~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~-~~~~aV~~ea~~~i~-~l~~~~~l~~-----~a 314 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSK-NVGNAILYETVLTIM-DIKSESGLRV-----LA 314 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSS-THHHHHHHHHHHHHH-HSCCCHHHHH-----HH
T ss_pred CChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhcccccc-chHHHHHHHHHHHHH-hcCCCHHHHH-----HH
Confidence 55667778888888876654321 134566666664210000 113456667777777 4543322211 35
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820 159 MGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232 (350)
Q Consensus 159 l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~ 232 (350)
++.|..+|.+.+.+.|.-|...|..+... ....+ ......++..+.++ +..-++.|+.+|+.++.
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~-----~p~~~---~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQT-----DHNAV---QRHRSTIVDCLKDL-DVSIKRRAMELSFALVN 379 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHH-----HHHHH---GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhh-----CHHHH---HHHHHHHHHHccCC-ChhHHHHHHHHHHHHcc
Confidence 77888888888888888888888888743 22223 34566777777765 56777888888888864
No 73
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.41 E-value=2 Score=43.82 Aligned_cols=155 Identities=11% Similarity=0.089 Sum_probs=89.0
Q ss_pred HHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCC
Q 046820 67 INSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLE 146 (350)
Q Consensus 67 lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~ 146 (350)
.+..+.....+.++..+.-|++.|..+... -+.+ .++|.+..+|. +. ++.++..|+.++..+...+
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~------~~~~-~l~~~l~~~L~---~~----~~~VRk~A~~al~~l~~~~ 173 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGSS------EMCR-DLAGEVEKLLK---TS----NSYLRKKAALCAVHVIRKV 173 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH------HHHH-HHHHHHHHHHH---SC----CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH------HHHH-HHHHHHHHHHc---CC----CHHHHHHHHHHHHHHHHHC
Confidence 334444333334556666677777766521 1222 35677777775 22 4778888888887322222
Q ss_pred hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcC-------------
Q 046820 147 GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEE------------- 213 (350)
Q Consensus 147 ~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~------------- 213 (350)
.+. + .+.++.+..+|...++..+.+|+.+|..+...+ ++....+ ..+++.|+++|.+
T Consensus 174 p~~---v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~--~~~~~~~---~~~v~~l~~~L~~~~~~~~~~~~~~~ 243 (618)
T 1w63_A 174 PEL---M--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS--PDMLAHF---RKLVPQLVRILKNLIMSGYSPEHDVS 243 (618)
T ss_dssp GGG---G--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH--HHHHHHH---HTTHHHHHHHHHHHHHSCCCTTTCSS
T ss_pred hHH---H--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC--hHHHHHH---HHHHHHHHHHHHHHHcCCCCcccccc
Confidence 221 1 146677777787778999999999999998542 2222222 3566777776653
Q ss_pred -CCChHHHHHHHHHHHHhhhh----HHHHHHHHHHHh
Q 046820 214 -PISPTATKAALVVIYHTIAS----SASALSVLDGIC 245 (350)
Q Consensus 214 -~~~~~a~k~Al~aL~~L~~~----~e~aL~vL~~L~ 245 (350)
-.++-..-..+.+|..++.. .+..+.+|..+.
T Consensus 244 ~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~ 280 (618)
T 1w63_A 244 GISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVA 280 (618)
T ss_dssp SSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 12454555566666666542 223444555553
No 74
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=94.24 E-value=1.5 Score=41.68 Aligned_cols=156 Identities=12% Similarity=0.145 Sum_probs=108.0
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHH-HhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHH
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTE-LVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS 236 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~-Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~ 236 (350)
....++.-|.+++.+.+..+..-|.. ++.+.+ ...+-| + .+.+..|++++.++ +..- --.
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~--Fa~EFI-~-~~GL~~Li~vi~~~-~gN~--------------q~Y 179 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKD--LVPEFV-H-SEGLSCLIRVGAAA-DHNY--------------QSY 179 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTT--HHHHHH-H-TTHHHHHHHHHTTS-CHHH--------------HHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchH--HHHHHH-H-hccHHHHHHHHHhc-ChHH--------------HHH
Confidence 56778888888888888888888887 443332 445556 4 46689999999765 3211 137
Q ss_pred HHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHh-----hc--hHHH
Q 046820 237 ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQ-----VG--AFQK 309 (350)
Q Consensus 237 aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~-----~G--~v~~ 309 (350)
+|.+|..|..+..|-..+..|+..|.-++..+-......-.-|.++|..+|.++.+ +-..+..++. .| -++.
T Consensus 180 ~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~ 258 (339)
T 3dad_A 180 ILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWAN 258 (339)
T ss_dssp HHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHH
T ss_pred HHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHH
Confidence 88899999999999999988877777777766644456678899999999998742 1223333332 12 3778
Q ss_pred HHHHHHh--cCchHHHHHHHHHHHHH
Q 046820 310 LLVLLQV--GCAERTKEKASEVLKLM 333 (350)
Q Consensus 310 LL~llq~--~~t~~ak~kA~~LLk~l 333 (350)
|+.+|+. ++....+-+|..|+.-+
T Consensus 259 Lv~~L~~~~~~D~elq~~amtLIN~l 284 (339)
T 3dad_A 259 LVSILEEKNGADPELLVYTVTLINKT 284 (339)
T ss_dssp HHHHHTTTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 8888872 33567788887777544
No 75
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=94.20 E-value=0.0063 Score=56.15 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.9
Q ss_pred cccccccCCccc-CCCCCCcccCCccc
Q 046820 25 GASLIEKDPVTT-TPRNGITYDRVNIL 50 (350)
Q Consensus 25 ~~~eiM~DPVtl-~~~TG~TYDR~sIe 50 (350)
..+++|+|||+. . .||||+|++|+
T Consensus 186 Icl~~f~DPVts~~--CGHsFcR~cI~ 210 (267)
T 3htk_C 186 ITCKPYEAPLISRK--CNHVFDRDGIQ 210 (267)
T ss_dssp TTSSBCSSEEEESS--SCCEEEHHHHH
T ss_pred CccCcccCCeeeCC--CCCcccHHHHH
Confidence 478999999985 8 89999999999
No 76
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.18 E-value=4.9 Score=43.54 Aligned_cols=225 Identities=12% Similarity=0.120 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHhcCccccchhhcc---CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC-CChhhHhhcccCCcH
Q 046820 84 KDLVAKIKEWAKESESNKSCIVDN---AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP-LEGEALTHLGSASSM 159 (350)
Q Consensus 84 ~~Al~~L~~Lak~s~~nR~~i~~a---Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k~~i~~~~~l 159 (350)
..|+..+..+++........ +. +.+|.++..+ ++ ....+++.|-+++..+.. ++.+.. ...+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~--e~~~~~~~~~~~~~~---~d----k~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~ 135 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSV--EPYIVQLVPAICTNA---GN----KDKEIQSVASETLISIVNAVNPVAI-----KALL 135 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTT--HHHHHTTHHHHHHHT---TC----SSHHHHHHHHHHHHHHHHHSCGGGH-----HHHH
T ss_pred HHHHHHHHHHHHhcCCCCCc--ccchHHHHHHHHHHh---cC----CchHHHHHHHHHHHHHHHhCCHHHH-----HHHH
Confidence 56777777777554321111 21 2233333333 22 235566555444432111 233322 2368
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhc-hhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh--H-
Q 046820 160 GCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSE-NEGAIEALFKLIEEPISPTATKAALVVIYHTIAS--S- 234 (350)
Q Consensus 160 ~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~-~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~--~- 234 (350)
+.|+..|.++ .+++|..|..+|..|+... ...++. -+++||.+-...-|- .+.-++.|..++..+|.. |
T Consensus 136 ~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~ 209 (986)
T 2iw3_A 136 PHLTNAIVETNKWQEKIAILAAFSAMVDAA-----KDQVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNK 209 (986)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCT
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHh-----HHHHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCc
Confidence 8999999876 7999999999999998542 233432 367777777777654 567788888888888752 1
Q ss_pred ----------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhc----cChhHHHHHHHHHHHHccccccch
Q 046820 235 ----------------ASALSVLDGICSTDCGRENANDKPLTMPVVVKKILR----VSELATELSVSILWKLCMNEKREE 294 (350)
Q Consensus 235 ----------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~----~S~~~~E~Av~iL~~Lc~~~~~~~ 294 (350)
+..=..+..|+.+- -.+++ ++-.++.+|-+|.| .+...+-.++-|.-|||+.-.+
T Consensus 210 d~~~~~~~~~~~~~~p~~~~~~~~~l~~~t-fv~~v--~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~-- 284 (986)
T 2iw3_A 210 DIERFIPSLIQCIADPTEVPETVHLLGATT-FVAEV--TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED-- 284 (986)
T ss_dssp TTGGGHHHHHHHHHCTTHHHHHHHHHTTCC-CCSCC--CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC--
T ss_pred chhhhHHHHHHHhcChhhhHHHHHHhhcCe-eEeee--cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC--
Confidence 12222333333320 00000 22223344444443 3566678999999999998642
Q ss_pred HHHHHHHHhhchHHHHHHHHH----hcCchHHHHHHHHHHHHHHhccC
Q 046820 295 KTAFVEALQVGAFQKLLVLLQ----VGCAERTKEKASEVLKLMNLHRD 338 (350)
Q Consensus 295 ~~~~~~~~~~G~v~~LL~llq----~~~t~~ak~kA~~LLk~l~~~~~ 338 (350)
+..... .+++|+=-++ .-.-|.+|+.|..-++.|.+.-.
T Consensus 285 ~~~~~~-----f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 285 PQVIAP-----FLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHH-----HHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhh-----hhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 322222 2444444443 23358999999999999988644
No 77
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.15 E-value=3.6 Score=42.52 Aligned_cols=235 Identities=10% Similarity=0.015 Sum_probs=130.5
Q ss_pred ChhHHHHHHHHHHHHHhcCccccchhhc--cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhh-Hhhccc
Q 046820 79 DQVGCKDLVAKIKEWAKESESNKSCIVD--NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEA-LTHLGS 155 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~--aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~-k~~i~~ 155 (350)
++..+..++..|..+++.... ..+.. ..+++.+...+. ++ +.+..++..|+.+|...+..-..+ ......
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~---~~--~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 215 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMR---KE--EPSNNVKLAATNALLNSLEFTKANFDKESER 215 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHS---TT--CSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhc---CC--CCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 556677899899888876321 11221 134555555553 21 113567888888887322211111 000000
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH-
Q 046820 156 ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS- 234 (350)
Q Consensus 156 ~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~- 234 (350)
...++.+...+...+.+.|..|...|..+..... ......+ . ..+++.++..+.+. ++.....|+..+..++...
T Consensus 216 ~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~-~-~~l~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~ 291 (876)
T 1qgr_A 216 HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY-QYMETYM-G-PALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEM 291 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG-GGCHHHH-T-TTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH-HHHHHHH-H-HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHH
Confidence 1246666777777788999999999999875431 1222223 1 26777777777654 4555566666665554320
Q ss_pred ------------------------------------------------------HHHHHHHHHHhCCHhhHHHhhcCCCC
Q 046820 235 ------------------------------------------------------ASALSVLDGICSTDCGRENANDKPLT 260 (350)
Q Consensus 235 ------------------------------------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~ 260 (350)
..|..+|..|+..- | ...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~-~-------~~~ 363 (876)
T 1qgr_A 292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-E-------DDI 363 (876)
T ss_dssp HHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH-G-------GGG
T ss_pred hHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC-c-------Hhh
Confidence 12222333332211 1 112
Q ss_pred hHHHHHH----HhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820 261 MPVVVKK----ILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336 (350)
Q Consensus 261 v~~lv~~----l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~ 336 (350)
++.++.. +...+...++.|+.+|..++...+. ..... .-..+++.|+..++ +..+..|..|...|..+...
T Consensus 364 ~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~-~~~~~l~~l~~~l~-d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP---SQLKP-LVIQAMPTLIELMK-DPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH---HHHHH-HHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH---HHHHH-HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHh
Confidence 3444333 3344567889999999888875431 12222 22346777777776 44688999998888877764
Q ss_pred c
Q 046820 337 R 337 (350)
Q Consensus 337 ~ 337 (350)
.
T Consensus 439 ~ 439 (876)
T 1qgr_A 439 L 439 (876)
T ss_dssp C
T ss_pred C
Confidence 3
No 78
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=93.82 E-value=2 Score=39.14 Aligned_cols=147 Identities=17% Similarity=0.186 Sum_probs=101.6
Q ss_pred CChhHHHHHHHHHHHHHhcCcc-ccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH---hhCCCChhhHhhc
Q 046820 78 QDQVGCKDLVAKIKEWAKESES-NKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI---LLFPLEGEALTHL 153 (350)
Q Consensus 78 ~~~~~~~~Al~~L~~Lak~s~~-nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~---~~Ls~~~e~k~~i 153 (350)
.|...+..++..|..+-|+-+. -|..+.+. ..|.++.++. +. +..+.-.|+.+|- .+.+++++.-..
T Consensus 45 kD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk---~~----dEkval~A~r~L~~LLe~vpL~~~~y~K- 115 (265)
T 3b2a_A 45 DDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALS---QE----NEKVTIKALRALGYLVKDVPMGSKTFLK- 115 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCC---ST----THHHHHHHHHHHHHHHTTCCBCHHHHHH-
T ss_pred cchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHh---cc----chhHHHHHHHHHHHHHcCCCCCHHHHHH-
Confidence 4667777888888888887322 22233333 4788888775 22 3555555555554 344555543332
Q ss_pred ccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 046820 154 GSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS 233 (350)
Q Consensus 154 ~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~ 233 (350)
.++.+..++++++.--+++|+-.|..|.-.. -.++++.-|..++. +.+++.+-+|+.+|.+++..
T Consensus 116 ----l~~aL~dlik~~~~il~~eaae~Lgklkv~~----------~~~~V~~~l~sLl~-Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 116 ----AAKTLVSLLESPDDMMRIETIDVLSKLQPLE----------DSKLVRTYINELVV-SPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp ----HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC----------CCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHGGG
T ss_pred ----HHHHHHHHhcCCCchHHHHHHHHhCcCCccc----------chHHHHHHHHHHHh-CCChhHHHHHHHHHHHhhcc
Confidence 4678888889999888999999999883221 13677788888884 44888888999999999752
Q ss_pred -------------------------HHHHHHHHHHHhCCH
Q 046820 234 -------------------------SASALSVLDGICSTD 248 (350)
Q Consensus 234 -------------------------~e~aL~vL~~L~~~~ 248 (350)
.|.||.+|+.+.+.+
T Consensus 181 S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 181 SADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 169999999999975
No 79
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.31 E-value=7.6 Score=39.96 Aligned_cols=243 Identities=9% Similarity=0.021 Sum_probs=128.6
Q ss_pred ChhHHHHHHHHHHHHHhcCccccchhhc--cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHh-hccc
Q 046820 79 DQVGCKDLVAKIKEWAKESESNKSCIVD--NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALT-HLGS 155 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~--aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~-~i~~ 155 (350)
++..+..++.-+..++++-...-+.+.. ..+++.+...+. +. +.+..++..|+.+|...+..-+++-. -...
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~---~~--~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ 222 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQ---ST--ETSKAVRLAALNALADSLIFIKNNMEREGER 222 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHS---TT--CCCHHHHHHHHHHHHHHGGGCHHHHTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhc---CC--CCCHHHHHHHHHHHHHHHHHHHHHccChhHH
Confidence 5667778888888888764322111111 123444444443 21 11467888899888743322221100 0001
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchh-hHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH
Q 046820 156 ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENE-GAIEALFKLIEEPISPTATKAALVVIYHTIASS 234 (350)
Q Consensus 156 ~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~-g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~ 234 (350)
...++.+...+.+.+.+.|..|+..|..+..... ......+ . .+++.+...+.+. ++.....|+..+..++...
T Consensus 223 ~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l---~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~ 297 (861)
T 2bpt_A 223 NYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY-TFMKPYM---EQALYALTIATMKSP-NDKVASMTVEFWSTICEEE 297 (861)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG-GGCHHHH---HHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHH
Confidence 1256677777777899999999999999874321 1111122 2 5666666777654 5667777777777765421
Q ss_pred -------------------------HHHHHH-HHHHhCCH--------hhHH----Hh---hc--CCCChHHHHHHHh--
Q 046820 235 -------------------------ASALSV-LDGICSTD--------CGRE----NA---ND--KPLTMPVVVKKIL-- 269 (350)
Q Consensus 235 -------------------------e~aL~v-L~~L~~~~--------eGr~----ai---~~--~~~~v~~lv~~l~-- 269 (350)
+..+.. +..|.... .-|. .+ .. ....++.++..+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~ 377 (861)
T 2bpt_A 298 IDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQN 377 (861)
T ss_dssp HHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHH
Confidence 011111 11222110 0010 00 00 1123455544443
Q ss_pred --ccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820 270 --RVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336 (350)
Q Consensus 270 --~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~ 336 (350)
..+...++.|+.+|..++.... .......+ ..+++.|+..+. +..+..|..|...|..+...
T Consensus 378 l~~~~~~~r~~a~~~l~~i~~~~~---~~~~~~~l-~~il~~l~~~l~-d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 378 ITADNWRNREAAVMAFGSIMDGPD---KVQRTYYV-HQALPSILNLMN-DQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSSC---HHHHHHHH-HHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCChhHHHHHHHHHHHHHcCCC---HHHHHHHH-HHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHH
Confidence 3345778999999999986542 11222222 235666665554 34678888887766655543
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=93.23 E-value=0.16 Score=40.74 Aligned_cols=86 Identities=20% Similarity=0.190 Sum_probs=58.2
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA 237 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a 237 (350)
.++.|+..|++.+...|..|+.+|-.+. . +++++.|+.+|+++ ++.-...|..+|.++.
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~-------------~-~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~------ 101 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQ-------------D-ERAVEPLIKLLEDD-SGFVRSGAARSLEQIG------ 101 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGC-------------S-HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcC-------------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC------
Confidence 4799999999889999999888776542 2 46789999999876 5555555555555442
Q ss_pred HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHH
Q 046820 238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSIL 283 (350)
Q Consensus 238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL 283 (350)
+..+++.|++.+...++..+..|+..|
T Consensus 102 -------------------~~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 102 -------------------GERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp -------------------SHHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred -------------------cHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 122356666666544555566666655
No 81
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=92.45 E-value=0.014 Score=43.08 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=22.0
Q ss_pred cccccccCCcccCCCCCCcccCCccc
Q 046820 25 GASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 25 ~~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
--+++|+|||++. .|+||.|..|+
T Consensus 13 IC~~~~~~Pv~~~--CgH~fc~~Ci~ 36 (78)
T 1t1h_A 13 ISLELMKDPVIVS--TGQTYERSSIQ 36 (78)
T ss_dssp TTSCCCSSEEEET--TTEEEEHHHHH
T ss_pred CccccccCCEEcC--CCCeecHHHHH
Confidence 4578999999999 99999999997
No 82
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=92.08 E-value=2.3 Score=38.72 Aligned_cols=166 Identities=14% Similarity=0.083 Sum_probs=101.8
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh--
Q 046820 156 ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS-- 233 (350)
Q Consensus 156 ~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~-- 233 (350)
.+.+..|..+|...+...|.+|..+|+++-...+ ...+..+ ....++.+++++++. +.+-.-.|+++|--|...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~-~~l~~~~--~e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRAD-SDLRMMV--LERHLDVFINALSQE-NEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSC-HHHHHHH--HHHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-ccccHHH--HHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCC
Confidence 4478888899988899999999999999986543 1233222 478999999999877 556666777777777432
Q ss_pred --H---HHHHHHHHHHhCCH---------hhHHHhhcCCCChHHHHHHHhc--c--ChhHHHHHHHHHHHHccccccchH
Q 046820 234 --S---ASALSVLDGICSTD---------CGRENANDKPLTMPVVVKKILR--V--SELATELSVSILWKLCMNEKREEK 295 (350)
Q Consensus 234 --~---e~aL~vL~~L~~~~---------eGr~ai~~~~~~v~~lv~~l~~--~--S~~~~E~Av~iL~~Lc~~~~~~~~ 295 (350)
. .+...+|-.+-... |+-..+ .-..-++-++..+++ . ..+.|..|...|.++..++++ .
T Consensus 108 L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D--~ 184 (265)
T 3b2a_A 108 MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD--S 184 (265)
T ss_dssp BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS--C
T ss_pred CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC--H
Confidence 1 23333443333321 111111 111223444444332 3 457899999999999998864 1
Q ss_pred HHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820 296 TAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMN 334 (350)
Q Consensus 296 ~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~ 334 (350)
+.. ..+|.-+=.+|++. .+..+++|-..|..+-
T Consensus 185 ~i~-----~~I~~eI~elL~~e-D~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 185 GHL-----TLILDEIPSLLQND-NEFIVELALDVLEKAL 217 (265)
T ss_dssp CCG-----GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHT
T ss_pred HHH-----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 121 22333344556666 6777888766655443
No 83
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=90.16 E-value=18 Score=36.84 Aligned_cols=223 Identities=14% Similarity=0.136 Sum_probs=113.9
Q ss_pred CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCC
Q 046820 78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSAS 157 (350)
Q Consensus 78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~ 157 (350)
.+++.+.-++..|..++..++. ...+. ...+.++..|. + ++ +..+...++.+|+. +. +++|-..
T Consensus 341 ~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~~~i~~~L~-~-d~----d~~Ir~~aL~lL~~-l~-~~~Nv~~----- 404 (621)
T 2vgl_A 341 RETNLRYLALESMCTLASSEFS-HEAVK--THIETVINALK-T-ER----DVSVRQRAVDLLYA-MC-DRSNAQQ----- 404 (621)
T ss_dssp SCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTHHHHHHHHT-T-CC----CHHHHHHHHHHHHH-HC-CHHHHHH-----
T ss_pred CCcchHHHHHHHHHHHHhccCc-HHHHH--HHHHHHHHHhc-c-CC----CHhHHHHHHHHHHH-Hc-ChhhHHH-----
Confidence 3556666666666666654421 11221 23455555553 1 22 46788889999983 43 3444332
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh----
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS---- 233 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~---- 233 (350)
.+.-|...+...+.+-|..++..+..++.. +. ....-++..|+++++...+ ....+....+.++...
T Consensus 405 Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k-----~~---~~~~~~v~~Ll~ll~~~~~-~v~~ev~~~l~~ii~~~~~~ 475 (621)
T 2vgl_A 405 IVAEMLSYLETADYSIREEIVLKVAILAEK-----YA---VDYTWYVDTILNLIRIAGD-YVSEEVWYRVIQIVINRDDV 475 (621)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-----HC---SSTHHHHHHHHHHHHHHGG-GSCSHHHHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-----cC---CcHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHhCChhH
Confidence 355666777777888888888888887631 10 0123455555555553211 1222333333333221
Q ss_pred HHHHHHHH-HHHhCCHhhHHHhh---------------cCCCC-----hHHHHHHHhccChhHHHHHHHHHHHHcccccc
Q 046820 234 SASALSVL-DGICSTDCGRENAN---------------DKPLT-----MPVVVKKILRVSELATELSVSILWKLCMNEKR 292 (350)
Q Consensus 234 ~e~aL~vL-~~L~~~~eGr~ai~---------------~~~~~-----v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~ 292 (350)
.+.++..| +.|-. ++.++.+. ..++. +..+.+.+...++..+..++.++..++...++
T Consensus 476 ~~~~~~~l~~~l~~-~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~ 554 (621)
T 2vgl_A 476 QGYAAKTVFEALQA-PACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE 554 (621)
T ss_dssp HHHHHHHHHHHHTS-SSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHcC-ccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH
Confidence 11121111 11111 12222221 11221 12233333345677788888888888765431
Q ss_pred chHHHHHHHHhhchHHHHHHHHHh--cCchHHHHHHHHHHHHHHhc
Q 046820 293 EEKTAFVEALQVGAFQKLLVLLQV--GCAERTKEKASEVLKLMNLH 336 (350)
Q Consensus 293 ~~~~~~~~~~~~G~v~~LL~llq~--~~t~~ak~kA~~LLk~l~~~ 336 (350)
.. ..+..++..... +-.+..|++|.+.+++|+..
T Consensus 555 ----~~------~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 555 ----VK------ATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp ----GH------HHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred ----HH------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence 11 113333333333 44679999999999999853
No 84
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=89.53 E-value=5.8 Score=35.41 Aligned_cols=139 Identities=9% Similarity=0.129 Sum_probs=79.1
Q ss_pred ChhHHHHHHHHHHHHHhcCc--ccc-chhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC-CChhhHhhcc
Q 046820 79 DQVGCKDLVAKIKEWAKESE--SNK-SCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP-LEGEALTHLG 154 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~--~nR-~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k~~i~ 154 (350)
+...+..|+..|..+++.-. .-. .+.. -++|.++..+. +. ...+++.+..+|..++. +++.. .. .
T Consensus 74 n~~v~~~A~~al~~la~~l~~~~f~~~y~~--~llp~ll~~l~---dk----k~~V~~aa~~al~~i~~~~~~~~-~~-~ 142 (249)
T 2qk1_A 74 NIQAVALAAQSVELICDKLKTPGFSKDYVS--LVFTPLLDRTK---EK----KPSVIEAIRKALLTICKYYDPLA-SS-G 142 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--HHHHHHHHGGG---CC----CHHHHHHHHHHHHHHHHHSCTTC-TT-C
T ss_pred CHHHHHHHHHHHHHHHHhcccccccHHHHH--HHHHHHHHHHc---CC----CHHHHHHHHHHHHHHHHHccccc-cC-C
Confidence 33445667777777774321 100 1111 13555555553 22 35566665555542111 21100 00 0
Q ss_pred -cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhh-hch-hhHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q 046820 155 -SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVL-SEN-EGAIEALFKLIEEPISPTATKAALVVIYHTI 231 (350)
Q Consensus 155 -~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~I-g~~-~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~ 231 (350)
=...++.|...|++.++..|+.++..|..+..... .....+ ... +.++|.|.+++.+. ++..+..|..+|-.++
T Consensus 143 ~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~--~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 143 RNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK--DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILI 219 (249)
T ss_dssp TTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC--SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 11468888999999999999999999999974421 100111 123 68999999999876 5666666666666665
No 85
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=86.20 E-value=15 Score=33.65 Aligned_cols=145 Identities=12% Similarity=0.098 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhcccCCcHHH
Q 046820 83 CKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGSASSMGC 161 (350)
Q Consensus 83 ~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~~l~~ 161 (350)
.+.|+.=+.-+|. +++.|..+.++.+.-.|-.+|.-.+... ....++-.++.++..++..+| |.-.-+.+.+.++.
T Consensus 73 VcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r--~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 73 VCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTR--PFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSH--HHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCC--cchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 3567877777886 5788999999998888889986211110 112334446655554333344 44444457789999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhh-------HHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 046820 162 MIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEG-------AIEALFKLIEEPISPTATKAALVVIYHTIAS 233 (350)
Q Consensus 162 Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g-------~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~ 233 (350)
..+.++.|+.-+|.-|+.++..+..++. .. .-+....+ ++..+|.-+.+..+++..|..+++-..|+.+
T Consensus 150 CLrime~GselSKtvAtfIlqKIL~dd~--GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 150 CLRIMESGSELSKTVATFILQKILLDDT--GL-AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHSHH--HH-HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhccch--hH-HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999986531 22 22222233 3333333333455888888777777777643
No 86
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=86.03 E-value=26 Score=35.95 Aligned_cols=159 Identities=8% Similarity=0.030 Sum_probs=93.9
Q ss_pred CCcHHHHHHHHccC--CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCC-ChHHHHHHHHHHHHhhh
Q 046820 156 ASSMGCMIWFLNSG--DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPI-SPTATKAALVVIYHTIA 232 (350)
Q Consensus 156 ~~~l~~Lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~-~~~a~k~Al~aL~~L~~ 232 (350)
+..++.++..+.++ +...|..|..+|..+..... ++.... ..+.+++.|+..+.++. +......|+.+|.+++.
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~--~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQLQD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-HHHHGG--GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-HhhHHh--HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 45789999999988 89999999999999975321 121111 13678888999998763 55666777888877754
Q ss_pred hHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHH
Q 046820 233 SSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLV 312 (350)
Q Consensus 233 ~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~ 312 (350)
.-... +.. ..-+. ..++.+...+....+..++.|..+|..++...+. .....+....++.++.
T Consensus 204 ~~~~~------~~~-~~~~~------~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~l~~~~~~ 266 (876)
T 1qgr_A 204 FTKAN------FDK-ESERH------FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ----YMETYMGPALFAITIE 266 (876)
T ss_dssp GCHHH------HTS-HHHHH------HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG----GCHHHHTTTHHHHHHH
T ss_pred HHHHH------HHh-HHHHH------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHH
Confidence 21100 000 00000 1234444433334456677888888888775432 2222223345665554
Q ss_pred HHHhcCchHHHHHHHHHHHHHHh
Q 046820 313 LLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 313 llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
.++ +..+..+..|-+.+..+.+
T Consensus 267 ~~~-~~~~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 267 AMK-SDIDEVALQGIEFWSNVCD 288 (876)
T ss_dssp HHT-CSSHHHHHHHHHHHHHHHH
T ss_pred Hhc-CCchHHHHHHHHHHHHHHH
Confidence 443 3356777777777766654
No 87
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=85.74 E-value=7.6 Score=42.38 Aligned_cols=180 Identities=11% Similarity=0.008 Sum_probs=102.5
Q ss_pred chHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHH
Q 046820 128 NVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEAL 207 (350)
Q Consensus 128 ~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~L 207 (350)
+..++..|..-|...+.-+.-.-.--.....++.++..|.+.+.+.|..|+..|..+..... . .. .+.+++.|
T Consensus 19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~--~--~~---~~~i~~~L 91 (1230)
T 1u6g_C 19 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK--E--YQ---VETIVDTL 91 (1230)
T ss_dssp SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC--H--HH---HHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC--H--HH---HHHHHHHH
Confidence 36677777666653332110000000012357778888888899999999999999986432 2 12 25678888
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhh-----HHHhhcCCCChHHHHHHHhc-cChhHHHHHHH
Q 046820 208 FKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCG-----RENANDKPLTMPVVVKKILR-VSELATELSVS 281 (350)
Q Consensus 208 V~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eG-----r~ai~~~~~~v~~lv~~l~~-~S~~~~E~Av~ 281 (350)
+..+.++ ++.....|..+|-.++.. .. ++. .... .+..+|.+.+.+.. .+...++.|+.
T Consensus 92 l~~l~d~-~~~vR~~a~~~L~~i~~~-----------l~-~~~~~~~~~~~~--~~~llp~L~~~l~~~~~~~~~~~al~ 156 (1230)
T 1u6g_C 92 CTNMLSD-KEQLRDISSIGLKTVIGE-----------LP-PASSGSALAANV--CKKITGRLTSAIAKQEDVSVQLEALD 156 (1230)
T ss_dssp HHHTTCS-SSHHHHHHHHHHHHHHHH-----------CC------CCTHHHH--HHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred HHHhcCC-cHHHHHHHHHHHHHHHHh-----------CC-CcccccchHHHH--HHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 8888776 334455555555554321 00 000 0001 22346888887763 56788999999
Q ss_pred HHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820 282 ILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 282 iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~ 335 (350)
+|..+|...+..-.... ...++.|+..++. ..+..|++|...|..+-.
T Consensus 157 ~l~~~~~~~~~~l~~~~-----~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 157 IMADMLSRQGGLLVNFH-----PSILTCLLPQLTS-PRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp HHHHHHHHTCSSCTTTH-----HHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHhHHHHHH-----HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHH
Confidence 99999975432100011 2234445544543 356777777766665554
No 88
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=85.48 E-value=25 Score=33.34 Aligned_cols=137 Identities=13% Similarity=0.088 Sum_probs=88.2
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA 237 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a 237 (350)
+++.|.+=+.+.++-.|.+|.++|.++... +. + +.+.+.+.+.|.+. +|--.|.|+.+.++|....
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~----~m---~---~~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~--- 170 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQITDS----TM---L---QAIERYMKQAIVDK-VPSVSSSALVSSLHLLKCS--- 170 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT----TT---H---HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH----HH---H---HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccC---
Confidence 678888889999999999999999999743 22 2 46677788888877 7788888888888886432
Q ss_pred HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhc
Q 046820 238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVG 317 (350)
Q Consensus 238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~ 317 (350)
+|-.. ..+..+-+.+...++...-+|+++|..++..++ . ++.+|+..+..+
T Consensus 171 ----------pe~v~------~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~----~---------a~~kLv~~l~~~ 221 (355)
T 3tjz_B 171 ----------FDVVK------RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR----L---------AVSKMISKFTRH 221 (355)
T ss_dssp ----------HHHHH------TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH----H---------HHHHHHHHHHSS
T ss_pred ----------HHHHH------HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch----H---------HHHHHHHHHhcC
Confidence 21111 234555554545566666799999999998642 1 344444444332
Q ss_pred C--chHHHHHHHHHHHHHHhccCCC
Q 046820 318 C--AERTKEKASEVLKLMNLHRDRL 340 (350)
Q Consensus 318 ~--t~~ak~kA~~LLk~l~~~~~~~ 340 (350)
+ ++-++-+ +||.+..+-+++
T Consensus 222 ~l~~~~~q~~---llr~l~~~~~~d 243 (355)
T 3tjz_B 222 GLKSPFAYCM---MIRVASRQLEDE 243 (355)
T ss_dssp CCSCHHHHHH---HHHHHTCC----
T ss_pred CCcChHHHHH---HHHHHHHhcccc
Confidence 2 3444444 677666655443
No 89
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=79.35 E-value=9.4 Score=32.17 Aligned_cols=78 Identities=9% Similarity=0.042 Sum_probs=56.1
Q ss_pred hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCCC
Q 046820 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRL 340 (350)
Q Consensus 261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~~ 340 (350)
+.+|.++|...++...-+|..+|=.+.+++| .....+..+...+..|..++.....+..|+|+.+|++.-....++.
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG---~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCG---KIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC---HHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh---HHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4567777877778888889999988888876 3466666666677777776764345799999877777666544444
Q ss_pred C
Q 046820 341 E 341 (350)
Q Consensus 341 ~ 341 (350)
|
T Consensus 131 ~ 131 (163)
T 1x5b_A 131 P 131 (163)
T ss_dssp S
T ss_pred c
Confidence 3
No 90
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=78.79 E-value=8.6 Score=32.42 Aligned_cols=60 Identities=12% Similarity=0.043 Sum_probs=47.7
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChH
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPT 218 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~ 218 (350)
.++..|.+-|+++++.....|..+|..+..... ..+...|++ .+++..|++++....++.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG-~~Fh~evas-~~Fl~el~~l~~~~~~~~ 111 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCG-KIFHLEVCS-RDFATEVRAVIKNKAHPK 111 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC-HHHHHHHTS-HHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh-HHHHHHHhh-HHHHHHHHHHHccCCCHH
Confidence 366777777888999999999999999997754 567778866 899999999997544543
No 91
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=75.26 E-value=9.5 Score=33.83 Aligned_cols=76 Identities=12% Similarity=0.074 Sum_probs=55.4
Q ss_pred hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCC
Q 046820 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDR 339 (350)
Q Consensus 261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~ 339 (350)
+.+|.++|...++...-+|+.+|-.+.+++| .....++.+...+..|..++.....+..|+|+.+|++......++
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG---~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCG---QTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC---HHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc---hHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 5678888887788889999999988888876 345666666666666655666555678999977777766654443
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=74.85 E-value=45 Score=29.55 Aligned_cols=188 Identities=13% Similarity=0.115 Sum_probs=102.6
Q ss_pred HHHhHhhhccCChhHHHHHHHHHHHHHhcCcccc---chhhcc-CchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820 68 NSKIKTACETQDQVGCKDLVAKIKEWAKESESNK---SCIVDN-AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF 143 (350)
Q Consensus 68 v~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR---~~i~~a-Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L 143 (350)
-.+|.+.. =..+.+|+.+|..+........ ..+..- ..++.+...+. |.+..+++.++.+|..++
T Consensus 15 ~e~l~sk~----WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-------DsN~~v~~~al~~l~~~~ 83 (278)
T 4ffb_C 15 EERLTYKL----WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-------DSNVVAQEQAIVALNSLI 83 (278)
T ss_dssp HHHTTCSS----HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-------CSSHHHHHHHHHHHHHHH
T ss_pred HHhcccCc----HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-------cchHHHHHHHHHHHHHHH
Confidence 35565543 3778899999988876543211 111112 23455555663 236778888888876332
Q ss_pred C-CChh--hHh--hcccCCcHHHHHH-HHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh
Q 046820 144 P-LEGE--ALT--HLGSASSMGCMIW-FLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP 217 (350)
Q Consensus 144 s-~~~e--~k~--~i~~~~~l~~Lv~-~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~ 217 (350)
. .... .+. ...-...++.|+. .|.++....|..|..+|..+..... ....+++.++..+.+. +|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~---------~~~~~~e~l~~~l~~K-np 153 (278)
T 4ffb_C 84 DAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT---------SITQSVELVIPFFEKK-LP 153 (278)
T ss_dssp TTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS---------SSHHHHHHHGGGGGCS-CH
T ss_pred HHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHhcc-CH
Confidence 2 1111 011 1111235666664 3566678888888888877764311 1134556666677655 77
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhc---CCCChHHHHHHHhccChhHHHHHHHHHHHHccccc
Q 046820 218 TATKAALVVIYHTIASSASALSVLDGICSTDCGRENAND---KPLTMPVVVKKILRVSELATELSVSILWKLCMNEK 291 (350)
Q Consensus 218 ~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~---~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~ 291 (350)
+.+..++..|..+... . |...+-. -...++.+.+.+...++..++.|..++..+.+.-|
T Consensus 154 kv~~~~l~~l~~~l~~----------f-----g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 154 KLIAAAANCVYELMAA----------F-----GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHHHHHHHHHH----------H-----TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHH----------h-----CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 7777777777766421 0 1111000 00123344554555667889999999999988764
No 93
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=74.55 E-value=6 Score=35.13 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccc
Q 046820 236 SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEK 291 (350)
Q Consensus 236 ~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~ 291 (350)
.++..|..|+....|...+..++..|..++..+...++..+-.|+.+|..+|..++
T Consensus 73 ~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~ 128 (233)
T 2f31_A 73 EIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 128 (233)
T ss_dssp HHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCC
Confidence 57788888899999999999999999999888876677888899999999999764
No 94
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=73.52 E-value=15 Score=30.09 Aligned_cols=77 Identities=8% Similarity=0.008 Sum_probs=52.9
Q ss_pred hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCCC
Q 046820 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRL 340 (350)
Q Consensus 261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~~ 340 (350)
+.++.++|...++...-+|..+|-.+.+++|. ....+..+...+..|..++.. ..+..|+|..+|++......+++
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~---~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGK---IFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH---HHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH---HHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhCCC
Confidence 46677777777788888899888888888763 455555555555555555554 36899999888877666554544
Q ss_pred C
Q 046820 341 E 341 (350)
Q Consensus 341 ~ 341 (350)
|
T Consensus 120 ~ 120 (140)
T 3ldz_A 120 P 120 (140)
T ss_dssp G
T ss_pred C
Confidence 4
No 95
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=73.22 E-value=14 Score=32.53 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=56.1
Q ss_pred hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCCC
Q 046820 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRL 340 (350)
Q Consensus 261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~~ 340 (350)
+.+|.++|...++...-+|..+|=.+.+++| .....+..+...+..|..++.....+..|+|+.++++......++.
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG---~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCG---APVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS 120 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH---HHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---HHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 4667778877788889999999999998876 3455566666666666666665556789999777777766544433
Q ss_pred C
Q 046820 341 E 341 (350)
Q Consensus 341 ~ 341 (350)
|
T Consensus 121 ~ 121 (220)
T 1dvp_A 121 D 121 (220)
T ss_dssp S
T ss_pred h
Confidence 3
No 96
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=72.96 E-value=18 Score=30.02 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=46.1
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP 214 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~ 214 (350)
++..|.+=|.++++.....|..+|..+..... ..+...|++ ..++..|++++.+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG-~~fh~eias-~~Fl~eL~kl~~~k 103 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCG-KRFHDEVGK-FRFLNELIKVVSPK 103 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCC-HHHHHHHTS-HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHhh-HHHHHHHHHHHccc
Confidence 67777777888899999999999999997754 567778866 89999999999753
No 97
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=71.16 E-value=18 Score=34.74 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=63.7
Q ss_pred HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccch-HHHHHHHH-------hhchH
Q 046820 236 SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREE-KTAFVEAL-------QVGAF 307 (350)
Q Consensus 236 ~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~-~~~~~~~~-------~~G~v 307 (350)
.++..|..|.....|...+..|+.+|..++..|...++..+..|..+|..+|....+.+ -..+.+++ +..-|
T Consensus 139 ~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF 218 (383)
T 3eg5_B 139 EIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERF 218 (383)
T ss_dssp HHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcH
Confidence 57788888899999999999999999999998877788889999999999999764111 22333333 22346
Q ss_pred HHHHHHHHhcCchHHHHH
Q 046820 308 QKLLVLLQVGCAERTKEK 325 (350)
Q Consensus 308 ~~LL~llq~~~t~~ak~k 325 (350)
..++..|..+.....+-.
T Consensus 219 ~~lv~~L~~~~~~e~~~~ 236 (383)
T 3eg5_B 219 QPLLDGLKSGTSIALKVG 236 (383)
T ss_dssp HHHHHTTSTTSCHHHHHH
T ss_pred HHHHHHHHccCcHHHHHH
Confidence 666655554333344443
No 98
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=70.48 E-value=0.72 Score=34.62 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=20.3
Q ss_pred ccccccCCcccCCCC-CCcccCCccc
Q 046820 26 ASLIEKDPVTTTPRN-GITYDRVNIL 50 (350)
Q Consensus 26 ~~eiM~DPVtl~~~T-G~TYDR~sIe 50 (350)
-.++|+|||++. . ||||-+..|+
T Consensus 19 C~~~~~~p~~~~--~CgH~fC~~Ci~ 42 (92)
T 3ztg_A 19 CKDIMTDAVVIP--CCGNSYCDECIR 42 (92)
T ss_dssp TTEECSSCEECT--TTCCEECHHHHH
T ss_pred CChhhcCceECC--CCCCHHHHHHHH
Confidence 468999999997 6 9999999887
No 99
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=70.14 E-value=57 Score=28.71 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=47.0
Q ss_pred CCcHHHHHHHH----ccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q 046820 156 ASSMGCMIWFL----NSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTI 231 (350)
Q Consensus 156 ~~~l~~Lv~~L----~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~ 231 (350)
++.++.+|.+| +-|+.+.|.|-.-+|.+++.. |...+ ++++..+..++.++ +...+-.|+..+-.+-
T Consensus 102 Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIara-----nP~l~---~~v~rdi~smltsk-d~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 102 PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-----NPMLM---ASIVRDFMSMLSSK-NREDKLTALNFIEAMG 172 (253)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-----CHHHH---HHHHHHHHHHTSCS-SHHHHHHHHHHHHTCC
T ss_pred HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHh-----ChHHH---HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHh
Confidence 44455555555 558999999999999999843 33444 57888899999866 4455566666666663
No 100
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=69.55 E-value=98 Score=31.20 Aligned_cols=106 Identities=11% Similarity=0.009 Sum_probs=77.5
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHh--cCCCChHHHHHHHHHHHHhhhhHH
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLI--EEPISPTATKAALVVIYHTIASSA 235 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL--~~~~~~~a~k~Al~aL~~L~~~~e 235 (350)
+++.+.+=|.+.+.-.|..|..+|.++.. ++.. +.+++.+.+.+ .+. ++.-.|.|..+++++....
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e~~------~~l~~~v~~~l~~~d~-~~~VRK~A~~al~kl~~~~- 179 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS----REMA------EAFAGEIPKILVAGDT-MDSVKQSAALCLLRLYRTS- 179 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HHHH------HHHTTHHHHHHHCSSS-CHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC----HHHH------HHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhC-
Confidence 46677777888889889999999988852 2322 46778888888 655 7788898999988886411
Q ss_pred HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccc
Q 046820 236 SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEK 291 (350)
Q Consensus 236 ~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~ 291 (350)
+ .+....+.++.+.++|...++....+|+.+|..+|...+
T Consensus 180 ------------p----~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 180 ------------P----DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp ------------G----GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred ------------h----hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 1 222234667888887766677889999999999998653
No 101
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=69.40 E-value=22 Score=29.35 Aligned_cols=55 Identities=9% Similarity=0.034 Sum_probs=45.8
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcC
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEE 213 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~ 213 (350)
.++..|.+=|+++++.....|..+|..+..... ..+...|++ .+++..|++++.+
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG-~~fh~evas-~~Fl~eL~kl~~~ 92 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCG-EKFHSEVAK-FRFLNELIKVLSP 92 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHTS-HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHhh-HHHHHHHHHHHcc
Confidence 366777777888999999999999999997754 567778866 8999999999975
No 102
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=69.04 E-value=17 Score=30.77 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=45.2
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcC
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEE 213 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~ 213 (350)
++..|.+-|++++......|..+|..+..... ..+...|++ .+++..|++++..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG-~~Fh~evas-~~Fl~eL~kl~~~ 104 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCG-RRFHNEVGK-FRFLNELIKVVSP 104 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH-HHHHHHHTS-HHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHhh-HHHHHHHHHHhcc
Confidence 67777778889999999999999999997743 466777866 8999999999974
No 103
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=67.93 E-value=17 Score=30.78 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=53.4
Q ss_pred hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh-----cCchHHHHHHHHHHHHHHh
Q 046820 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV-----GCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~-----~~t~~ak~kA~~LLk~l~~ 335 (350)
+.+|.++|...++...-+|..+|=.+.+++| .....+..+...+..|..++.. ...+..|+|+.+|++.-..
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG---~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCG---RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH---HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC---HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677788877788888999999999988886 3466666677777777766642 2247899997777766554
Q ss_pred c
Q 046820 336 H 336 (350)
Q Consensus 336 ~ 336 (350)
.
T Consensus 129 ~ 129 (171)
T 1juq_A 129 A 129 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 104
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=67.50 E-value=13 Score=32.98 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=48.5
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK 221 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k 221 (350)
.++..|.+=|.++++.....|..+|..+..... ..+...|++ ..++..|+++++...++.-++
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG-~~f~~eias-~~fl~~l~~l~~~~~~~~Vk~ 107 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCG-QTVHDEVAN-KQTMEELKDLLKRQVEVNVRN 107 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC-HHHHHHHSS-HHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc-hHHHHhhcc-HHHHHHHHHHhccCCCHHHHH
Confidence 367777777888899999999999999987644 456777866 799999999997554443333
No 105
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=67.30 E-value=20 Score=29.67 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=53.2
Q ss_pred hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh-----cCchHHHHHHHHHHHHHHh
Q 046820 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV-----GCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~-----~~t~~ak~kA~~LLk~l~~ 335 (350)
+.+|.++|...++...-+|..+|=.+.+++| .....+......+..|..++.. ...+..|+|..+|++....
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG---~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCG---KRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCC---HHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC---HHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 5677888877788888999999999888887 3466666666667776666642 2357899996666665554
Q ss_pred cc
Q 046820 336 HR 337 (350)
Q Consensus 336 ~~ 337 (350)
..
T Consensus 127 ~f 128 (149)
T 3g2s_A 127 GL 128 (149)
T ss_dssp HC
T ss_pred Hh
Confidence 33
No 106
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=65.68 E-value=1.3e+02 Score=31.05 Aligned_cols=221 Identities=16% Similarity=0.152 Sum_probs=115.4
Q ss_pred CCCcccCCccccCCCCcccCCcchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCcc--ccchhhccCchHHHHHHH
Q 046820 40 NGITYDRVNILIENERIIPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESES--NKSCIVDNAAVSVLAAAF 117 (350)
Q Consensus 40 TG~TYDR~sIe~PN~r~~p~~~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~--nR~~i~~aGai~~Lv~lL 117 (350)
+|.|--|.-||.-+-.| |.+ -...|+..|-++. =+.+-.|+-.||.+.+.... .|..-......--|+.+|
T Consensus 155 ~~~tik~~kied~~~eW-Pfq--fcE~L~~DLFdp~----WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVL 227 (800)
T 3oc3_A 155 SGEAIKRHKVDERPIEN-VLD--FFEQISDNLLSYE----WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEIL 227 (800)
T ss_dssp C------------CCCS-GGG--TTHHHHHHTTCSS----HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHH
T ss_pred CcchhhhhhhhhcCCCC-HHH--HHHHHHHHhcCcc----hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHH
Confidence 67777776666444334 222 3446777776654 37777888888888877642 111000012222233332
Q ss_pred --Hhccccccc-cchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHH
Q 046820 118 --ESFSKTCLD-ENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKV 194 (350)
Q Consensus 118 --~~~~~~~~~-~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~ 194 (350)
..|++=.+| .-..|+|.+..+|.....++++ -..+..++..+....++.|..+...|..+. +..
T Consensus 228 ALDRFGDYVSDqVVAPVRETaAQtLGaL~hLp~e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~------DLL 294 (800)
T 3oc3_A 228 VTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIGP-------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK------EFV 294 (800)
T ss_dssp HHBCCBBCSSSSCBCHHHHHHHHHHHHHTTTSCS-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG------GGC
T ss_pred HhccccccccCeeeeehHHHHHHHHHHHHhCChh-------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH------HHH
Confidence 335431111 2245677766666533233333 245666666667778999999999999992 222
Q ss_pred hhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhh-----------------------hhHHHHHHHHHHHhCCHhhH
Q 046820 195 NVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTI-----------------------ASSASALSVLDGICSTDCGR 251 (350)
Q Consensus 195 ~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~-----------------------~~~e~aL~vL~~L~~~~eGr 251 (350)
. .-+++++.++.-|++. +..-.-.|..+|..++ .+.-..+.+|..||+++.
T Consensus 295 ~---~Ld~Vv~aVL~GL~D~-DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-- 368 (800)
T 3oc3_A 295 E---DKDGLCRKLVSLLSSP-DEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP-- 368 (800)
T ss_dssp C---CHHHHHHHHHHHTTCS-SHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT--
T ss_pred H---HHHHHHHHHHhhcCCc-ccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc--
Confidence 1 2378899999888876 3333333444444332 123467888888888773
Q ss_pred HHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHc
Q 046820 252 ENANDKPLTMPVVVKKILRVSELATELSVSILWKLC 287 (350)
Q Consensus 252 ~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc 287 (350)
.....+.-||.|.-.++-.....+..++.+|..+.
T Consensus 369 -~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 369 -ELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp -TCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred -ccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 22234444555554443344566677777775554
No 107
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=65.55 E-value=68 Score=29.61 Aligned_cols=131 Identities=17% Similarity=0.052 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhCCCChhhHhhccc--CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHh-hhhchhhHHHHHH
Q 046820 132 LEEILSTLILLFPLEGEALTHLGS--ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVN-VLSENEGAIEALF 208 (350)
Q Consensus 132 ~e~Al~~L~~~Ls~~~e~k~~i~~--~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~-~Ig~~~g~i~~LV 208 (350)
+--++.++. |+=-....+..+.+ ...++.+...+.+.+...|.-++.++++++... .+. .+.....++..+.
T Consensus 165 ~ml~lR~l~-NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~----~~~~~~~~~~~ll~~l~ 239 (304)
T 3ebb_A 165 QLLALRTFC-NCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCF----HKDHNIEGKAQCLSLIS 239 (304)
T ss_dssp HHHHHHHHH-HGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHH----HHSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH----hhcCCchHHHHHHHHHH
Confidence 444666666 66434444544432 335566666655557899999999999998431 110 0101123445555
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccC--hhHHHHHHHH
Q 046820 209 KLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVS--ELATELSVSI 282 (350)
Q Consensus 209 ~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S--~~~~E~Av~i 282 (350)
.+++...++++.- ++|.+|.+|..++....+++ ....+...++.+..++ ++-.|.|-.+
T Consensus 240 ~il~~~~d~Ealy--------------R~LvALGtL~~~~~~~~~la-k~l~~~~~v~~~~~~~~~~kv~~~~~~~ 300 (304)
T 3ebb_A 240 TILEVVQDLEATF--------------RLLVALGTLISDDSNAVQLA-KSLGVDSQIKKYSSVSEPAKVSECCRFI 300 (304)
T ss_dssp HHHTTCCCHHHHH--------------HHHHHHHHHHTTCHHHHHHH-HHTTHHHHGGGGGGCCSSHHHHHHHHHH
T ss_pred HHHhccCCHHHHH--------------HHHHHHHHHHhCChhHHHHH-HHcCHHHHHHHHHhCCCchhHHHHHHHH
Confidence 6665444544443 44445555554432222332 2334555555555553 2334444333
No 108
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.72 E-value=15 Score=32.20 Aligned_cols=58 Identities=12% Similarity=0.101 Sum_probs=46.2
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP 217 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~ 217 (350)
++..|.+=|.++++.....|..+|..+..... ..+...|++ ..++..|++++.+..++
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG-~~f~~eva~-~~fl~~l~~l~~~~~~~ 100 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCG-APVHEEVFT-KENCEMFSSFLESTPHE 100 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH-HHHHHHHSS-HHHHHHHHHHHHHCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-HHHHHHHHh-HHHHHHHHHHhcCCCcH
Confidence 66677777888899999999999999987643 456677866 78999999999865444
No 109
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=64.43 E-value=23 Score=28.88 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=43.9
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcC
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEE 213 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~ 213 (350)
++..|.+-|.++++.....|..+|..+..... ..+...|++ ..++..|++++..
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG-~~f~~evas-~~Fl~el~~l~~~ 96 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCG-KIFHLEVCS-RDFASEVSNVLNK 96 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcC-HHHHHHHhh-HHHHHHHHHHhcc
Confidence 56677777888899999999999999987654 566777866 7899999999954
No 110
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=63.62 E-value=17 Score=30.02 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=52.7
Q ss_pred hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh-----cCchHHHHHHHHHHHHHHh
Q 046820 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV-----GCAERTKEKASEVLKLMNL 335 (350)
Q Consensus 261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~-----~~t~~ak~kA~~LLk~l~~ 335 (350)
+.++.++|...++...-+|..+|=.+.+++| .....+..+...+..|..++.. ...+..|+|+.+|++....
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG---~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCG---EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC---HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC---HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677888877788889999999999988886 3466666677777766655542 1256899997666665554
Q ss_pred c
Q 046820 336 H 336 (350)
Q Consensus 336 ~ 336 (350)
.
T Consensus 117 ~ 117 (148)
T 1mhq_A 117 W 117 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 111
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=60.83 E-value=1.2e+02 Score=28.91 Aligned_cols=159 Identities=11% Similarity=0.078 Sum_probs=93.1
Q ss_pred HHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCcc--ccchhhccCchHHHHHHHHhcccccc----ccchHHHHHHHHH
Q 046820 65 LEINSKIKTACETQDQVGCKDLVAKIKEWAKESES--NKSCIVDNAAVSVLAAAFESFSKTCL----DENVSVLEEILST 138 (350)
Q Consensus 65 ~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~--nR~~i~~aGai~~Lv~lL~~~~~~~~----~~~~~~~e~Al~~ 138 (350)
...+..|.+.. ..+.-.+.+..|+.--+.++. -+.++ .+.+..|+.+|..+..... ..+...+...+.+
T Consensus 69 ~~yi~~L~~~~---~~~kl~~~L~sL~v~Lrt~~~sWV~~F~--~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~C 143 (383)
T 3eg5_B 69 MMYIQELRSGL---RDMHLLSCLESLRVSLTSHPVSWVQTFG--AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRC 143 (383)
T ss_dssp HHHHHHHTTTC---CHHHHHHHHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHH
T ss_pred HHHHHHHHhcc---cchhHHHHHHHHHHHHhhCccHHHHHHH--HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence 34566665532 112223466677654444432 34454 5568899999864321100 1124556778888
Q ss_pred HHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchh-HHhhh---------hchhhHHHHHH
Q 046820 139 LILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQR-KVNVL---------SENEGAIEALF 208 (350)
Q Consensus 139 L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~-~~~~I---------g~~~g~i~~LV 208 (350)
|-.++........++..+..+..|+..|.+..+..|..|.-+|-.++...+.+. ....+ ++ ..-+..+|
T Consensus 144 LkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e-~~RF~~lv 222 (383)
T 3eg5_B 144 LKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLL 222 (383)
T ss_dssp HHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCC-CCcHHHHH
Confidence 875444333344567778999999999999999999999999977765432011 22222 22 23477788
Q ss_pred HHhcCCCChHHHHHHHHHHHHh
Q 046820 209 KLIEEPISPTATKAALVVIYHT 230 (350)
Q Consensus 209 ~lL~~~~~~~a~k~Al~aL~~L 230 (350)
..|+++.+ -..+.+.+.|.|.
T Consensus 223 ~~L~~~~~-~e~~~~~m~lIN~ 243 (383)
T 3eg5_B 223 DGLKSGTS-IALKVGCLQLINA 243 (383)
T ss_dssp HTTSTTSC-HHHHHHHHHHHHH
T ss_pred HHHHccCc-HHHHHHHHHHHHH
Confidence 88876533 3445555555555
No 112
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=60.53 E-value=17 Score=34.81 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=48.4
Q ss_pred HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccc
Q 046820 236 SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEK 291 (350)
Q Consensus 236 ~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~ 291 (350)
.++..|..|+....|...+..++.+|..++..+...++..+-.++.+|..+|..+.
T Consensus 77 ~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~ 132 (386)
T 2bnx_A 77 EIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 132 (386)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCC
Confidence 57778888899999999999999999999888766677788889999999999764
No 113
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=56.88 E-value=1e+02 Score=26.96 Aligned_cols=117 Identities=9% Similarity=0.049 Sum_probs=72.9
Q ss_pred HHHHHhHhhhccCChhHHHHHHHHHHHHHhcCcc--ccchhhccCchHHHHHHHHhcccccc----ccchHHHHHHHHHH
Q 046820 66 EINSKIKTACETQDQVGCKDLVAKIKEWAKESES--NKSCIVDNAAVSVLAAAFESFSKTCL----DENVSVLEEILSTL 139 (350)
Q Consensus 66 ~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~--nR~~i~~aGai~~Lv~lL~~~~~~~~----~~~~~~~e~Al~~L 139 (350)
..+++|++.. +.+.-.+-++.|+..-+.++. -+.+ ..|++..|+.+|........ +.+...+.+.+.+|
T Consensus 4 ~yi~~L~~~~---~~~~~~~~L~~L~v~Lrt~~~~Wv~~F--~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CL 78 (233)
T 2f31_A 4 MYIQELRSGL---RDMHLLSCLESLRVSLNNNPVSWVQTF--GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCL 78 (233)
T ss_dssp HHHHHHTTTC---CHHHHHHHHHHHHHHHHHSCHHHHHHH--HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHH
T ss_pred HHHHHHHhcc---chHHHHHHHHHHhHhHhcCCcHHHHHH--HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence 3456665532 222223456666655554432 3444 25678889999864321100 11244567788888
Q ss_pred HhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcC
Q 046820 140 ILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSS 187 (350)
Q Consensus 140 ~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~ 187 (350)
-..+........++..++.+..|+..|.+..+..|..+.-+|..++..
T Consensus 79 kalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~ 126 (233)
T 2f31_A 79 KAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL 126 (233)
T ss_dssp HHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 755543333445667788999999999988999999999888877654
No 114
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=56.37 E-value=35 Score=28.30 Aligned_cols=78 Identities=12% Similarity=0.024 Sum_probs=53.5
Q ss_pred hHHHHHHHh-ccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHH-HHHHHHh--cCchHHHHHHHHHHHHHHhc
Q 046820 261 MPVVVKKIL-RVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQK-LLVLLQV--GCAERTKEKASEVLKLMNLH 336 (350)
Q Consensus 261 v~~lv~~l~-~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~-LL~llq~--~~t~~ak~kA~~LLk~l~~~ 336 (350)
+.++.++|. ..++...-+|..+|=.+.+++| .....+..+...+.. |..++.. +.....|+|+.++++.-...
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG---~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCG---HRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC---HHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC---HHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 456777776 3567778899999999988886 346666667677776 5555532 22348999988887776665
Q ss_pred cCCCC
Q 046820 337 RDRLE 341 (350)
Q Consensus 337 ~~~~~ 341 (350)
.+++|
T Consensus 132 f~~~p 136 (157)
T 1elk_A 132 FRSSP 136 (157)
T ss_dssp HTTCT
T ss_pred cCCCc
Confidence 45444
No 115
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=53.70 E-value=91 Score=28.38 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCHhhHHHhhcCCCChHHH-HHHHhccC-hhH----HHHHHHHHHHHccccccchHHHHHHHHhhchHHH
Q 046820 236 SALSVLDGICSTDCGRENANDKPLTMPVV-VKKILRVS-ELA----TELSVSILWKLCMNEKREEKTAFVEALQVGAFQK 309 (350)
Q Consensus 236 ~aL~vL~~L~~~~eGr~ai~~~~~~v~~l-v~~l~~~S-~~~----~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~ 309 (350)
-||++|-.+|+++|-|..++ .+. ||.. --.+...+ .+. +=.+.++..+|.+. ++.++..-.++...|+-
T Consensus 75 naLaLlQcvAshpetr~~Fl-~a~-iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~---dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 75 NALALLQCVASHPETRSAFL-AAH-IPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKT---DEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHCTTTHHHHH-HTT-GGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGG---CCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHcCcchhhHHH-Hcc-chHHhhhhhccccCCCcchhhhhhHHHHHHHHhcc---CcHHHHHHHHhhhHHHH
Confidence 68999999999999999997 344 4433 33333333 222 44578888888875 34678888889999998
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHH
Q 046820 310 LLVLLQVGCAERTKEKASEVLKLM 333 (350)
Q Consensus 310 LL~llq~~~t~~ak~kA~~LLk~l 333 (350)
.|..|+.| ++-.|-.|.-+++-+
T Consensus 150 CLrime~G-selSKtvAtfIlqKI 172 (268)
T 2fv2_A 150 CLRIMESG-SELSKTVATFILQKI 172 (268)
T ss_dssp HHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHhhc-cHHHHHHHHHHHHHH
Confidence 88888876 889999999887654
No 116
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=53.33 E-value=58 Score=26.93 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=42.9
Q ss_pred cHHHHHHHHc-cCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHH-HHHHhcC
Q 046820 158 SMGCMIWFLN-SGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEA-LFKLIEE 213 (350)
Q Consensus 158 ~l~~Lv~~L~-~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~-LV~lL~~ 213 (350)
++..|.+=|+ +++......|..+|..+..... ..+...|++ .+++.. |++++..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG-~~fh~eva~-~~fl~e~Lvk~~~~ 109 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCG-HRFHVLVAS-QDFVESVLVRTILP 109 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC-HHHHHHHTS-HHHHHHHTHHHHST
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC-HHHHHHHhh-HHHHHHHHHHHhcc
Confidence 5666677776 4788888999999999997754 567777866 899998 8999964
No 117
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=52.78 E-value=3.8 Score=29.35 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=19.9
Q ss_pred ccccccCCcccCCCC-CCcccCCccc
Q 046820 26 ASLIEKDPVTTTPRN-GITYDRVNIL 50 (350)
Q Consensus 26 ~~eiM~DPVtl~~~T-G~TYDR~sIe 50 (350)
-+++|+|||++. . ||+|=+..|+
T Consensus 21 C~~~~~~p~~~~--~CgH~fC~~Ci~ 44 (74)
T 2yur_A 21 CKDIMTDAVVIP--CCGNSYCDECIR 44 (74)
T ss_dssp SCCCCTTCEECS--SSCCEECTTHHH
T ss_pred CChHHhCCeEcC--CCCCHHHHHHHH
Confidence 368999999986 6 9999998886
No 118
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=52.70 E-value=2.5e+02 Score=30.31 Aligned_cols=174 Identities=9% Similarity=0.077 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh--hhHh-hcccC
Q 046820 80 QVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG--EALT-HLGSA 156 (350)
Q Consensus 80 ~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~--e~k~-~i~~~ 156 (350)
..++..+...|..+...+...+ ....|++..|...+. +- ... |.|+.++..+..... ...+ .+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~k-----~~~-~~a~~~~~~~~~~~~~~~~~e~~~~-- 94 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIK---DK-----KTA-ANAMQAVAHIANQSNLSPSVEPYIV-- 94 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHT---SH-----HHH-HHHHHHHHHHTCTTTCCTTTHHHHH--
T ss_pred hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHh---cc-----CCH-HHHHHHHHHHHHhcCCCCCcccchH--
Confidence 4567788888888877543221 222467777777774 11 112 777776663332111 0011 111
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHH
Q 046820 157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS 236 (350)
Q Consensus 157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~ 236 (350)
+.++.+...+.......|..|..++..+...- +...+ ..++|.|+.-+.+...=+.+..|+.+|-.|+...
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~----~~~a~---~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-- 165 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAV----NPVAI---KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-- 165 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS----CGGGH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC----CHHHH---HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--
Confidence 35666666655556778887777777776432 11222 5788888888865544567777777777665310
Q ss_pred HHHHHHHHhCCHhhHHHhh-cCCCChHHHHHHHhccChhHHHHHHHHHHHHccc
Q 046820 237 ALSVLDGICSTDCGRENAN-DKPLTMPVVVKKILRVSELATELSVSILWKLCMN 289 (350)
Q Consensus 237 aL~vL~~L~~~~eGr~ai~-~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~ 289 (350)
+ ..+. .-+..||++-+.|..-.+..+..|..+|-.+|..
T Consensus 166 -----------~---~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~ 205 (986)
T 2iw3_A 166 -----------K---DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATET 205 (986)
T ss_dssp -----------H---HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG
T ss_pred -----------H---HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhc
Confidence 1 1110 0123345555555444555555555555555553
No 119
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.65 E-value=6.5 Score=30.78 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.8
Q ss_pred ccccccCCccc-CCCCCCcccCCccc
Q 046820 26 ASLIEKDPVTT-TPRNGITYDRVNIL 50 (350)
Q Consensus 26 ~~eiM~DPVtl-~~~TG~TYDR~sIe 50 (350)
-.++|+|||++ . -||||=+..|+
T Consensus 28 C~~~~~~pv~~~~--CgH~fC~~Ci~ 51 (117)
T 1jm7_B 28 CTNILREPVCLGG--CEHIFCSNCVS 51 (117)
T ss_dssp SCSCCSSCBCCCS--SSCCBCTTTGG
T ss_pred CChHhhCccEeCC--CCCHHHHHHHH
Confidence 36899999999 8 89999999997
No 120
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=45.02 E-value=60 Score=26.59 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=51.9
Q ss_pred hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhc-hHHHHHHHHHh-----cC---chHHHHHHHHHHH
Q 046820 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVG-AFQKLLVLLQV-----GC---AERTKEKASEVLK 331 (350)
Q Consensus 261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G-~v~~LL~llq~-----~~---t~~ak~kA~~LLk 331 (350)
+..|.+.|...++..+-.|..+|--||.++. +.++.++.+.- .|..|. ..+- .| ....|.+|.+|+.
T Consensus 51 m~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs---~~f~~~~r~~~~~Ik~l~-~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 51 SEFILKRLDNKSPIVKQKALRLIKYAVGKSG---SEFRREMQRNSVAVRNLF-HYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC---HHHHHHHHHTTHHHHTTT-TCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcceeehHHHHHHHHHHhCC---HHHHHHHHHhHHHHHHHH-hcCCCCCcccccchhHHHHHHHHHHHH
Confidence 4667777777788889999999999999864 67888877443 333221 1110 11 2578999999999
Q ss_pred HHHhccC
Q 046820 332 LMNLHRD 338 (350)
Q Consensus 332 ~l~~~~~ 338 (350)
+|...-+
T Consensus 127 ll~d~~~ 133 (140)
T 1vdy_A 127 AIFSEEN 133 (140)
T ss_dssp HHTCCSS
T ss_pred HHhCcCC
Confidence 9988544
No 121
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=41.72 E-value=2.3e+02 Score=26.64 Aligned_cols=91 Identities=13% Similarity=0.045 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHH
Q 046820 128 NVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEAL 207 (350)
Q Consensus 128 ~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~L 207 (350)
++-++-.|+.+|. ++..++ -- ....+.+...|.+.++-.|..|+.....|.... .+.+ .+++..+
T Consensus 117 N~~iR~lALRtL~-~I~~~~-m~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-----pe~v---~~~~~~l 181 (355)
T 3tjz_B 117 EDSYRGPAVRALC-QITDST-ML-----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-----FDVV---KRWVNEA 181 (355)
T ss_dssp CHHHHHHHHHHHH-HHCCTT-TH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-----HHHH---HTTHHHH
T ss_pred cHhHHHHHHHHHh-cCCCHH-HH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-----HHHH---HHHHHHH
Confidence 4667788888888 443222 00 123455566666779999999999999997543 3344 4788999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhhhH
Q 046820 208 FKLIEEPISPTATKAALVVIYHTIASS 234 (350)
Q Consensus 208 V~lL~~~~~~~a~k~Al~aL~~L~~~~ 234 (350)
-+++.+. ++.-.-.|+.+|+.++...
T Consensus 182 ~~ll~d~-n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 182 QEAASSD-NIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HHHTTCS-SHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCC-CccHHHHHHHHHHHHHhhc
Confidence 9999876 6666678888888887643
No 122
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=41.42 E-value=4.1 Score=32.24 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=20.7
Q ss_pred ccccccCCcccCCCCCCcccCCccc
Q 046820 26 ASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 26 ~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
-.++|.|||++. -||||-+..|+
T Consensus 58 C~~~~~~p~~~~--CgH~fC~~Ci~ 80 (124)
T 3fl2_A 58 CQELVFRPITTV--CQHNVCKDCLD 80 (124)
T ss_dssp TSSBCSSEEECT--TSCEEEHHHHH
T ss_pred CChHHcCcEEee--CCCcccHHHHH
Confidence 467999999999 99999999886
No 123
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=38.59 E-value=4e+02 Score=28.65 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820 306 AFQKLLVLLQVGCAERTKEKASEVLKLMN 334 (350)
Q Consensus 306 ~v~~LL~llq~~~t~~ak~kA~~LLk~l~ 334 (350)
.+++++.+|...+.+..|.-|..-|-++.
T Consensus 612 ~v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 612 TVPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp SHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 34666655554557888888887777664
No 124
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=36.10 E-value=2.6e+02 Score=25.61 Aligned_cols=240 Identities=15% Similarity=0.075 Sum_probs=114.5
Q ss_pred CCcchHHHHHHHhHhhhcc------CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHH
Q 046820 59 VCSVEVLEINSKIKTACET------QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVL 132 (350)
Q Consensus 59 ~~~~~v~~lv~~l~~~~~~------~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~ 132 (350)
.+..++..++.+|+..... -+ ++...++.+|....+.+.. .......+..|..++. ...+ .+
T Consensus 52 f~~an~~~i~~KL~EfN~~~~~~~~Ls-~~el~~L~~l~~~l~~~s~---~~~~~~~l~~l~kil~-WP~~-------~~ 119 (304)
T 3ebb_A 52 FDQANPTQILGKLKELNGTAPEEKKLT-EDDLILLEKILSLICNSSS---EKPTVQQLQILWKAIN-CPED-------IV 119 (304)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCGGGCCC-HHHHHHHHHHHHHHHTTCS---SCCCHHHHHHHHHHHT-SCTT-------TC
T ss_pred hhccCHHHHHHHHHHHHHccccccCcC-HHHHHHHHHHHHHHhccCC---CccchHHHHHHHHHHc-CCHH-------hH
Confidence 3456677777777654321 12 4556777777665543311 1111224567777763 2211 11
Q ss_pred HHHHHHHHhhCCCChhhHhhcccC-C---cHHHHHHHHcc-CCHHHHHHHHHHHHHHhcCCCchhHHhhh-hchhhHHHH
Q 046820 133 EEILSTLILLFPLEGEALTHLGSA-S---SMGCMIWFLNS-GDLSRRRNAVLLLTELVSSDSDQRKVNVL-SENEGAIEA 206 (350)
Q Consensus 133 e~Al~~L~~~Ls~~~e~k~~i~~~-~---~l~~Lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~I-g~~~g~i~~ 206 (350)
=-++.+|. ++.+++..-..+.+. . .+..+...+.. +.+..+.-+.+++.++.... ..+..+ .....++..
T Consensus 120 fPvLDLlR-l~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~---~g~~~l~~~~~~il~~ 195 (304)
T 3ebb_A 120 FPALDILR-LSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ---AGQKLMMSQRESLMSH 195 (304)
T ss_dssp HHHHHHHH-HHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH---HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHH-HHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc---hhHHHHHHHHHHHHHH
Confidence 22333343 222333222233221 1 12223333322 35667889999999998763 444443 233445555
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc-ChhHHHHHHHHHHH
Q 046820 207 LFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV-SELATELSVSILWK 285 (350)
Q Consensus 207 LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~-S~~~~E~Av~iL~~ 285 (350)
+...+.+. +.-..-++...+||++...-+. .-.+++..+ +..+...+... +..+.-.+..+|.+
T Consensus 196 ~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~--------~~~~~~~~l------l~~l~~il~~~~d~EalyR~LvALGt 260 (304)
T 3ebb_A 196 AIELKSGS-NKNIHIALATLALNYSVCFHKD--------HNIEGKAQC------LSLISTILEVVQDLEATFRLLVALGT 260 (304)
T ss_dssp HHGGGSSC-CHHHHHHHHHHHHHHHHHHHHS--------CCHHHHHHH------HHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCC-ChhHHHHHHHHHHHHHHHHhhc--------CCchHHHHH------HHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 55555432 4455566688899997431100 001222221 12222222222 33444555555555
Q ss_pred HccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 046820 286 LCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLM 333 (350)
Q Consensus 286 Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l 333 (350)
|...+ .++.+.+-..|+-..+-....+.-+++.++-|+.+|++|
T Consensus 261 L~~~~----~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 261 LISDD----SNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp HHTTC----HHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred HHhCC----hhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 66532 234433333343332222223324688999999888753
No 125
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=34.48 E-value=6.3 Score=32.65 Aligned_cols=23 Identities=17% Similarity=-0.002 Sum_probs=20.8
Q ss_pred ccccccCCcccCCCCCCcccCCccc
Q 046820 26 ASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 26 ~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
-.++|+|||++. -|+||-+..|+
T Consensus 84 C~~~~~~pv~~~--CgH~fC~~Ci~ 106 (150)
T 1z6u_A 84 CQELVYQPVTTE--CFHNVCKDCLQ 106 (150)
T ss_dssp TSSBCSSEEECT--TSCEEEHHHHH
T ss_pred CChhhcCCEEcC--CCCchhHHHHH
Confidence 367999999999 99999999987
No 126
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.45 E-value=8.5 Score=26.58 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.6
Q ss_pred cccccCCcccCCCCCCcccCCccc
Q 046820 27 SLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 27 ~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
.+.|+|||++. -||+|=+..|+
T Consensus 22 ~~~~~~p~~~~--CgH~fC~~Ci~ 43 (66)
T 2ecy_A 22 HLVLCSPKQTE--CGHRFCESCMA 43 (66)
T ss_dssp CCEESSCCCCS--SSCCCCHHHHH
T ss_pred ChHhcCeeECC--CCCHHHHHHHH
Confidence 67899999999 99999988776
No 127
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=34.18 E-value=4.7e+02 Score=28.13 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=16.7
Q ss_pred CChHHHHHHHhc-cChhHHHHHHHHHHHHcccc
Q 046820 259 LTMPVVVKKILR-VSELATELSVSILWKLCMNE 290 (350)
Q Consensus 259 ~~v~~lv~~l~~-~S~~~~E~Av~iL~~Lc~~~ 290 (350)
..++.+++.+.. ..+..+-.|+-+|..+|-..
T Consensus 611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn 643 (963)
T 4ady_A 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK 643 (963)
T ss_dssp SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC
Confidence 456666665543 34444555555555555433
No 128
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.07 E-value=8.2 Score=26.35 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=18.7
Q ss_pred cccccCCcccCCCCCCcccCCccc
Q 046820 27 SLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 27 ~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
.+.++|||++. -||+|=+.-|+
T Consensus 27 ~~~~~~p~~~~--CgH~fC~~Ci~ 48 (63)
T 2ysj_A 27 LDILQKPVTID--CGHNFCLKCIT 48 (63)
T ss_dssp CSBCSSCEECT--TSSEECHHHHH
T ss_pred CchhCCeEEeC--CCCcchHHHHH
Confidence 67899999999 99999876654
No 129
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=29.66 E-value=13 Score=26.41 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.8
Q ss_pred cccccCCcccCCCCCCcccCCccc
Q 046820 27 SLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 27 ~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
.+.++|||++. -||+|=+..|+
T Consensus 19 ~~~~~~p~~l~--CgH~fC~~Ci~ 40 (79)
T 2egp_A 19 LELLTEPLSLD--CGHSLCRACIT 40 (79)
T ss_dssp TEECSSCCCCS--SSCCCCHHHHS
T ss_pred CcccCCeeECC--CCCHHHHHHHH
Confidence 57889999999 99999998887
No 130
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=29.15 E-value=2.1e+02 Score=28.37 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=68.9
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh--hHHHHHHHHHHH
Q 046820 167 NSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA--SSASALSVLDGI 244 (350)
Q Consensus 167 ~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~--~~e~aL~vL~~L 244 (350)
.+|+.++|.-|+..|-.....= ..+ . ..+|.++++|..+. +.+-.+.|++.|-.+|. +..+..-+|.+|
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~F------P~l-~-~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~~~i~kiaDvL~Ql 108 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHF------PEL-A-DSAINAQLDLCEDE-DVSIRRQAIKELPQFATGENLPRVADILTQL 108 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGC------GGG-H-HHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhC------hhh-H-HHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhhhhhhhHHHHHHHH
Confidence 3567888888888888776431 123 2 57888888888766 66677888888888874 344677777777
Q ss_pred hCCHhhHHHhhc----------C-CCChHHHHHHHhccChhHHHHHHHHHHH
Q 046820 245 CSTDCGRENAND----------K-PLTMPVVVKKILRVSELATELSVSILWK 285 (350)
Q Consensus 245 ~~~~eGr~ai~~----------~-~~~v~~lv~~l~~~S~~~~E~Av~iL~~ 285 (350)
...++..+--.. + .+.+..+..-|..+.+..+|.++..|..
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 776654433211 1 1233444444445555566666666643
No 131
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.99 E-value=28 Score=23.20 Aligned_cols=22 Identities=14% Similarity=-0.219 Sum_probs=19.5
Q ss_pred cccccCCcccCCCCCCcccCCccc
Q 046820 27 SLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 27 ~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
.+.++|||++. -||||=+..|+
T Consensus 13 ~~~~~~p~~l~--CgH~fC~~Ci~ 34 (56)
T 1bor_A 13 QAEAKCPKLLP--CLHTLCSGCLE 34 (56)
T ss_dssp CSSCBCCSCST--TSCCSBTTTCS
T ss_pred CCccCCeEEcC--CCCcccHHHHc
Confidence 57889999999 99999988876
No 132
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=28.40 E-value=78 Score=26.14 Aligned_cols=78 Identities=12% Similarity=0.023 Sum_probs=47.1
Q ss_pred hHHHHHHHhcc-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHH-HHHHHHhc-Cc-hHHHHHHHHHHHHHHhc
Q 046820 261 MPVVVKKILRV-SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQK-LLVLLQVG-CA-ERTKEKASEVLKLMNLH 336 (350)
Q Consensus 261 v~~lv~~l~~~-S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~-LL~llq~~-~t-~~ak~kA~~LLk~l~~~ 336 (350)
+.+|.++|... ++...-.|..+|-.+.+++|. ....++.+...+.. |..++... .+ ...|+|..+|++.....
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~---~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGP---SFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCH---HHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCH---HHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 56777878643 556667899988888888863 45555554433332 33333321 23 47999977777666654
Q ss_pred cCCCC
Q 046820 337 RDRLE 341 (350)
Q Consensus 337 ~~~~~ 341 (350)
.+++|
T Consensus 132 F~~~p 136 (152)
T 3rru_A 132 FPGGV 136 (152)
T ss_dssp CSSSC
T ss_pred hCCCC
Confidence 44443
No 133
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=28.38 E-value=3.8e+02 Score=25.22 Aligned_cols=158 Identities=11% Similarity=0.077 Sum_probs=91.8
Q ss_pred HHHHHhHhhhccCChhHHHHHHHHHHHHHhcCcc--ccchhhccCchHHHHHHHHhcccccc----ccchHHHHHHHHHH
Q 046820 66 EINSKIKTACETQDQVGCKDLVAKIKEWAKESES--NKSCIVDNAAVSVLAAAFESFSKTCL----DENVSVLEEILSTL 139 (350)
Q Consensus 66 ~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~--nR~~i~~aGai~~Lv~lL~~~~~~~~----~~~~~~~e~Al~~L 139 (350)
..|.+|.+.. ..+.-.+-+..|+..-+.++. -+.++ .|++..|+.+|........ ..+...+.+.+.+|
T Consensus 8 ~yv~~L~~~~---~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~--~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CL 82 (386)
T 2bnx_A 8 MYIQELRSGL---RDMHLLSCLESLRVSLNNNPVSWVQTFG--AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCL 82 (386)
T ss_dssp HHHHHHTSCC---CHHHHHHHHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcc---chHHHHHHHHHHhHHHhcCCcHHHHHHH--HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 4566665532 212223456777655555432 44443 4678889998864321100 11345567788888
Q ss_pred HhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchh-HHhhh---------hchhhHHHHHHH
Q 046820 140 ILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQR-KVNVL---------SENEGAIEALFK 209 (350)
Q Consensus 140 ~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~-~~~~I---------g~~~g~i~~LV~ 209 (350)
-.++........++..+..+..|+..|.+..+..|..+.-+|..++...+... ....+ ++ ..-+..||+
T Consensus 83 kalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e-~~RF~~lv~ 161 (386)
T 2bnx_A 83 KAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLD 161 (386)
T ss_dssp HHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCc-hhhHHHHHH
Confidence 75554333344566778899999999998889999999888877765432011 22122 11 234566777
Q ss_pred HhcCCCChHHHHHHHHHHHHh
Q 046820 210 LIEEPISPTATKAALVVIYHT 230 (350)
Q Consensus 210 lL~~~~~~~a~k~Al~aL~~L 230 (350)
.++++.+ ...+.+.+.+.|.
T Consensus 162 ~l~~~~~-~e~~~a~m~lIN~ 181 (386)
T 2bnx_A 162 GLKSGTS-IALKVGCLQLINA 181 (386)
T ss_dssp HTSTTSC-HHHHHHHHHHHHH
T ss_pred HHHcCCh-HHHHHHHHHHHHH
Confidence 7765433 3455555555555
No 134
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.30 E-value=15 Score=24.30 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.1
Q ss_pred ccccccCCcccCCCCCCcccCCccc
Q 046820 26 ASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 26 ~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
-.+.++|||++. -||+|=+.-|+
T Consensus 21 C~~~~~~p~~~~--CgH~fC~~Ci~ 43 (58)
T 2ecj_A 21 CLEYLKEPVIIE--CGHNFCKACIT 43 (58)
T ss_dssp SCCBCSSCCCCS--SCCCCCHHHHH
T ss_pred CCcccCccEeCC--CCCccCHHHHH
Confidence 367899999999 99999876654
No 135
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.68 E-value=19 Score=27.37 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.6
Q ss_pred ccccccCCcccCCCCCCcccCCccc
Q 046820 26 ASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 26 ~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
-.+.++|||++. -||+|-+..|+
T Consensus 27 C~~~~~~p~~~~--CgH~fC~~Ci~ 49 (112)
T 1jm7_A 27 CLELIKEPVSTK--CDHIFCKFCML 49 (112)
T ss_dssp SCCCCSSCCBCT--TSCCCCSHHHH
T ss_pred cChhhcCeEECC--CCCHHHHHHHH
Confidence 367899999999 99999999887
No 136
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=26.02 E-value=5.8e+02 Score=26.61 Aligned_cols=118 Identities=9% Similarity=-0.018 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC------------CCChhhHhhc
Q 046820 86 LVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF------------PLEGEALTHL 153 (350)
Q Consensus 86 Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L------------s~~~e~k~~i 153 (350)
|-..|..+- . ..|+...|+.++.+ ++ .+..++--|.-.|- |. .++++.|..|
T Consensus 23 Ae~~L~~~~-~---------~p~~~~~L~~il~~--~~---~~~~vR~~A~i~lk-n~i~~~w~~~~~~~~l~~~~k~~i 86 (960)
T 1wa5_C 23 SERNLRQLE-T---------QDGFGLTLLHVIAS--TN---LPLSTRLAGALFFK-NFIKRKWVDENGNHLLPANNVELI 86 (960)
T ss_dssp HHHHHHHHH-T---------STTHHHHHHHHHHC--TT---SCHHHHHHHHHHHH-HHHHHHSBCSSSCBSSCHHHHHHH
T ss_pred HHHHHHHhh-c---------CCCHHHHHHHHHhc--CC---CCHHHHHHHHHHHH-HHHHhcCCCcccCCCCCHHHHHHH
Confidence 666666552 2 25788899998852 11 12344444433333 32 2344444443
Q ss_pred ccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820 154 GSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232 (350)
Q Consensus 154 ~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~ 232 (350)
. ..|+..|.+.+...|..++.++-.++.. ++. +.=+++++.|+..+.++ ++.....++.+|..++.
T Consensus 87 k-----~~ll~~l~~~~~~ir~~l~~~ia~ia~~----d~p---~~Wp~ll~~L~~~l~s~-~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 87 K-----KEIVPLMISLPNNLQVQIGEAISSIADS----DFP---DRWPTLLSDLASRLSND-DMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp H-----HHHHHHHHHSCHHHHHHHHHHHHHHHHH----HST---TTCTTHHHHHHTTCCSS-CTTHHHHHHHHHHHHHG
T ss_pred H-----HHHHHHHHhCCHHHHHHHHHHHHHHHHh----hCc---cchhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 2 2344455555677777888888777643 121 22388999999999876 55677888999998875
No 137
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=25.53 E-value=10 Score=30.53 Aligned_cols=23 Identities=17% Similarity=-0.011 Sum_probs=20.6
Q ss_pred ccccccCCcccCCCCCCcccCCccc
Q 046820 26 ASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 26 ~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
-.+.|.|||+++ =||||=+..|.
T Consensus 59 C~~~~~~~~~~~--CgH~fc~~Ci~ 81 (138)
T 4ayc_A 59 CSEYFIEAVTLN--CAHSFCSYCIN 81 (138)
T ss_dssp TCSBCSSEEEET--TSCEEEHHHHH
T ss_pred cCcccCCceECC--CCCCccHHHHH
Confidence 357899999999 99999999987
No 138
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=25.48 E-value=3.7e+02 Score=24.12 Aligned_cols=65 Identities=12% Similarity=0.220 Sum_probs=47.3
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHH---HHHHHHhcCCCChHHHHHHHHHHHHhh
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAI---EALFKLIEEPISPTATKAALVVIYHTI 231 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i---~~LV~lL~~~~~~~a~k~Al~aL~~L~ 231 (350)
.++.+..-+++-+...|+.+...|.++-.... +.. ...+ +.+.+++.|. ++.-..+|+.++..+.
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G-------~~~-~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLLVIEYYITNAG-------ISP-LKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC-------SGG-GGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC-------CCc-cccccchHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 56777777788899999999988888863221 112 3567 9999999876 6667777787777664
No 139
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=25.31 E-value=11 Score=28.95 Aligned_cols=23 Identities=13% Similarity=-0.022 Sum_probs=20.4
Q ss_pred ccccccCCccc-CCCCCCcccCCccc
Q 046820 26 ASLIEKDPVTT-TPRNGITYDRVNIL 50 (350)
Q Consensus 26 ~~eiM~DPVtl-~~~TG~TYDR~sIe 50 (350)
-.++|+|||++ . -||+|-+..|+
T Consensus 21 C~~~~~~p~~~~~--CgH~fC~~Ci~ 44 (108)
T 2ckl_A 21 CGGYFIDATTIIE--CLHSFCKTCIV 44 (108)
T ss_dssp TSSBCSSEEEETT--TCCEEEHHHHH
T ss_pred CChHHhCcCEeCC--CCChhhHHHHH
Confidence 36889999998 8 89999999887
No 140
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.68 E-value=11 Score=27.10 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=20.2
Q ss_pred ccccccCCcccCCCCCCcccCCccc
Q 046820 26 ASLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 26 ~~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
-.+.|+|||++. -||+|-+..|.
T Consensus 21 C~~~~~~p~~~~--CgH~fC~~Ci~ 43 (81)
T 2csy_A 21 CRQAFQNPVVTK--CRHYFCESCAL 43 (81)
T ss_dssp SCSBCCSEEECT--TSCEEEHHHHH
T ss_pred CCchhcCeeEcc--CCCHhHHHHHH
Confidence 367899999999 99999998886
No 141
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=24.41 E-value=12 Score=29.06 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.2
Q ss_pred cccccCCcccCCCCCCcccCCccc
Q 046820 27 SLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 27 ~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
.++|+|||++. -|++|-+..|+
T Consensus 30 ~~~~~~p~~~~--CgH~fC~~Ci~ 51 (116)
T 1rmd_A 30 EHILADPVETS--CKHLFCRICIL 51 (116)
T ss_dssp CSBCSSEEECT--TSCEEEHHHHH
T ss_pred CcHhcCcEEcC--CCCcccHHHHH
Confidence 67899999999 99999998887
No 142
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=22.83 E-value=18 Score=27.97 Aligned_cols=22 Identities=23% Similarity=0.071 Sum_probs=20.0
Q ss_pred cccccCCcccCCCCCCcccCCccc
Q 046820 27 SLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 27 ~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
.++|+|||++. -||||=+..|+
T Consensus 22 ~~~~~~p~~~~--CgH~fC~~Ci~ 43 (115)
T 3l11_A 22 MEILVEPVTLP--CNHTLCKPCFQ 43 (115)
T ss_dssp CSBCSSCEECT--TSCEECHHHHC
T ss_pred CcccCceeEcC--CCCHHhHHHHH
Confidence 57899999999 99999998887
No 143
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.82 E-value=30 Score=24.51 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=19.5
Q ss_pred cccccCCcccCCCCCCcccCCccc
Q 046820 27 SLIEKDPVTTTPRNGITYDRVNIL 50 (350)
Q Consensus 27 ~eiM~DPVtl~~~TG~TYDR~sIe 50 (350)
.+.++|||++. -||+|=+..|+
T Consensus 26 ~~~~~~p~~~~--CgH~fC~~Ci~ 47 (85)
T 2ecv_A 26 LELLTQPLSLD--CGHSFCQACLT 47 (85)
T ss_dssp CSCCSSCBCCS--SSCCBCTTHHH
T ss_pred CcccCCceeCC--CCCHHHHHHHH
Confidence 67889999999 99999998876
No 144
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=22.23 E-value=14 Score=27.72 Aligned_cols=22 Identities=9% Similarity=-0.139 Sum_probs=19.5
Q ss_pred cccccCCccc-CCCCCCcccCCccc
Q 046820 27 SLIEKDPVTT-TPRNGITYDRVNIL 50 (350)
Q Consensus 27 ~eiM~DPVtl-~~~TG~TYDR~sIe 50 (350)
.+.|+|||++ . -||+|-+..|+
T Consensus 29 ~~~~~~p~~~~~--CgH~fC~~Ci~ 51 (99)
T 2y43_A 29 FEYFNIAMIIPQ--CSHNYCSLCIR 51 (99)
T ss_dssp CSBCSSEEECTT--TCCEEEHHHHH
T ss_pred ChhhCCcCEECC--CCCHhhHHHHH
Confidence 5789999988 7 89999998887
No 145
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=21.17 E-value=6.9e+02 Score=25.73 Aligned_cols=134 Identities=10% Similarity=0.051 Sum_probs=76.0
Q ss_pred ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCC-hhhHhhcccCC
Q 046820 79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLE-GEALTHLGSAS 157 (350)
Q Consensus 79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~-~e~k~~i~~~~ 157 (350)
+...+..++..|..++...... +...++.++..+..+..+ ++.++..++.++. -++-. .++...+ ..
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~----~~~vr~~~~~~l~-~~~~~l~~~~~~l--~~ 529 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISIS----NVQLADTVMFTIG-ALSEWLADHPVMI--NS 529 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCC----SHHHHHHHHHHHH-HTHHHHHHCHHHH--TT
T ss_pred chHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCC----cHHHHHHHHHHHH-HHHHHHHhCHHHH--HH
Confidence 3345555666677666543221 124556666665323222 4567777877776 23300 0112222 35
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhh-hchhhHHHHHHHHhcCC-CChHHHHHHHHHHHHhh
Q 046820 158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVL-SENEGAIEALFKLIEEP-ISPTATKAALVVIYHTI 231 (350)
Q Consensus 158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~I-g~~~g~i~~LV~lL~~~-~~~~a~k~Al~aL~~L~ 231 (350)
.++.|+..|.+ ...+..|+.+|..++.. ++..+ .-.+.++..|..++.++ .+.......+.++..+.
T Consensus 530 vl~~l~~~l~~--~~V~~~A~~al~~l~~~-----~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 530 VLPLVLHALGN--PELSVSSVSTLKKICRE-----CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp THHHHHHHTTC--GGGHHHHHHHHHHHHHH-----TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--chHHHHHHHHHHHHHHH-----HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 78888888854 67888999999999843 22223 22356777777777753 24445555555555553
No 146
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.33 E-value=20 Score=25.15 Aligned_cols=22 Identities=18% Similarity=-0.019 Sum_probs=19.1
Q ss_pred cccccCCccc-CCCCCCcccCCccc
Q 046820 27 SLIEKDPVTT-TPRNGITYDRVNIL 50 (350)
Q Consensus 27 ~eiM~DPVtl-~~~TG~TYDR~sIe 50 (350)
.+.|+|||++ . -||+|=+.-|+
T Consensus 22 ~~~~~~p~~~~~--CgH~fC~~Ci~ 44 (72)
T 2djb_A 22 KGYLIDATTITE--CLHTFCKSCIV 44 (72)
T ss_dssp SSCCSSCEECSS--SCCEECHHHHH
T ss_pred ChHHHCcCEECC--CCCHHHHHHHH
Confidence 6789999997 7 89999888775
Done!