BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046821
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 130/299 (43%), Gaps = 36/299 (12%)
Query: 85 LKSPLPEPDLPVPANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVY-----N 139
L++ P A+++ W+ +++ DAK+ V + G GV+EG+R Y
Sbjct: 12 LEAQTQGPGSMSMADRDGKIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGG 71
Query: 140 GKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFR-------------------- 179
+F+L+EH RL+ + F + + E + ++ + R
Sbjct: 72 TAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDVVRENKLESCYLRPIIWIGSEKL 131
Query: 180 ------TLIRNVLPEWKPPVYDN----THGVNLVTATTRRNSPN-NLDSKXXXXXXXXXX 228
I + W Y G+ + T++ R+ N ++
Sbjct: 132 GVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSI 191
Query: 229 XAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATXXXXX 288
A E +A++LD DGYVSE + N FLV +G++ TP CL GITR T
Sbjct: 192 LANQEATADGYDEALLLDVDGYVSEGSGENFFLVNRGKLYTPDLASCLDGITRDTVITLA 251
Query: 289 XXXXXXXXXRRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVY 347
+RI+ E +TADE + TGT E+TP+ ++D R +G G GP+T+++Q +
Sbjct: 252 KEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIRELDNRTIGGGARGPITEKLQSAF 310
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 124/284 (43%), Gaps = 36/284 (12%)
Query: 100 KNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGK----VFKLEEHLDRLVKG 155
K L W+ VP+++AK SV + G V+EG+R Y +F+L+EH+ R
Sbjct: 4 KAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNS 63
Query: 156 KQKFGKVIVWY-MELVIMVKQAIFRTLIR-----------------NVLP---------- 187
+ I + EL +K+ + R R N LP
Sbjct: 64 AKVLRMEIPFAPEELEEAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAA 123
Query: 188 -EWKPPVYDNT--HGVNLVTATTRRNSPNNLDSKXXXX-XXXXXXXAKIEGNNANAGDAI 243
EW + + G L+T++ R N + K AK+E A A +A+
Sbjct: 124 WEWGAYLGEEAVRKGARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEAL 183
Query: 244 MLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATXXXXXXXXXXXXXXRRISLS 303
+LD++GYV+E + N+F V+ G + L GITR + R +
Sbjct: 184 LLDEEGYVAEGSGENLFFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRD 243
Query: 304 EFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVY 347
+ + ADEV+ TGT E+TPV ID R +G G GPV R+++VY
Sbjct: 244 QLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVY 287
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 124/290 (42%), Gaps = 41/290 (14%)
Query: 105 WVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGK----VFKLEEHLDRLVKGKQKF- 159
W E+V +DAKV V + G V+EG+R Y+ VF+ EH+ RL + +
Sbjct: 10 WFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYR 69
Query: 160 ---GKVIVWYMELV--IMVKQAIFRTLIR------NVLPEWKPPVYDNT----------- 197
+ I ME ++ K + IR +V PP +T
Sbjct: 70 FPVSQSIDELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGA 129
Query: 198 --------HGVNLVTATTRRNSPNNL-DSKXXXXXXXXXXXAKIEGNNANAGDAIMLDKD 248
G++ + ++ R +PN + + E + I LD +
Sbjct: 130 YLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVN 189
Query: 249 GYVSETNATNIFLVKKGRVLTP-HADYCLPGITRATXXXXXXXXXXXXXXRRISLSEFHT 307
GY+SE N+F VK G + TP LPGITR + +S +
Sbjct: 190 GYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYL 249
Query: 308 ADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQK----VYKKETEE 353
ADEV+ +GT EITPV +DG VG+G+ GPVT+RIQ+ ++ ETE+
Sbjct: 250 ADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGETED 299
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 124/290 (42%), Gaps = 41/290 (14%)
Query: 105 WVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGK----VFKLEEHLDRLVKGKQKF- 159
W E+V +DAKV V + G V+EG+R Y+ VF+ EH+ RL + +
Sbjct: 9 WFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYR 68
Query: 160 ---GKVIVWYMELV--IMVKQAIFRTLIR------NVLPEWKPPVYDNT----------- 197
+ I ME ++ K + IR +V PP +T
Sbjct: 69 FPVSQSIDELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGA 128
Query: 198 --------HGVNLVTATTRRNSPNNL-DSKXXXXXXXXXXXAKIEGNNANAGDAIMLDKD 248
G++ + ++ R +PN + + E + I LD +
Sbjct: 129 YLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVN 188
Query: 249 GYVSETNATNIFLVKKGRVLTP-HADYCLPGITRATXXXXXXXXXXXXXXRRISLSEFHT 307
GY+SE N+F VK G + TP LPGITR + +S +
Sbjct: 189 GYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYL 248
Query: 308 ADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQK----VYKKETEE 353
ADEV+ +GT EITPV +DG VG+G+ GPVT+RIQ+ ++ ETE+
Sbjct: 249 ADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGETED 298
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 126/282 (44%), Gaps = 35/282 (12%)
Query: 108 DEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKG-----------K 156
D+IV ++ K+ D Q GDGV+E ++VYNG++F + EH+DRL K
Sbjct: 7 DQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTK 66
Query: 157 QKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSP-NNL 215
KF +++ +E + I+ + R P +NT ++ T P NL
Sbjct: 67 DKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQ-FPENTVKPVIIGYTKENPRPLENL 125
Query: 216 D---------------SKXXXXXXXXXXXAKIEGNNANAGDAIMLDKDGYVSETNATNIF 260
+ AK E + +AI L ++ V+E +++N+F
Sbjct: 126 EKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTEGSSSNVF 184
Query: 261 LVKKGRVLT-PHADYCLPGITRATXXXXXXXXXXXXXXRRISLSEFHTADEVWTTGTMGE 319
+K G + T P + L GITR + E DE++ T T E
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 320 ITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGVPIPSY 361
ITPV++IDG+++ DGKVG T+++QK + E+ +P P +
Sbjct: 245 ITPVIEIDGKLIRDGKVGEWTRKLQKQF-----ETKIPKPLH 281
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 125/280 (44%), Gaps = 35/280 (12%)
Query: 108 DEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKG-----------K 156
D+IV ++ K+ D Q GDGV+E ++VYNG++F + EH+DRL K
Sbjct: 7 DQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTK 66
Query: 157 QKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSP-NNL 215
KF +++ +E + I+ + R P +NT ++ T P NL
Sbjct: 67 DKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQ-FPENTVKPVIIGYTKENPRPLENL 125
Query: 216 D---------------SKXXXXXXXXXXXAKIEGNNANAGDAIMLDKDGYVSETNATNIF 260
+ AK E + +AI L ++ V+E +++N+F
Sbjct: 126 EKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTEGSSSNVF 184
Query: 261 LVKKGRVLT-PHADYCLPGITRATXXXXXXXXXXXXXXRRISLSEFHTADEVWTTGTMGE 319
+K G + T P + L GITR + E DE++ T T E
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 320 ITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGVPIP 359
ITPV++IDG+++ DGKVG T+++QK + E+ +P P
Sbjct: 245 ITPVIEIDGKLIRDGKVGEWTRKLQKQF-----ETKIPKP 279
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 121/269 (44%), Gaps = 30/269 (11%)
Query: 108 DEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKG-----------K 156
D+IV ++ K+ D Q GDGV+E ++VYNG++F + EH+DRL K
Sbjct: 7 DQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTK 66
Query: 157 QKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSP-NNL 215
KF +++ +E + I+ + R P +NT ++ T P NL
Sbjct: 67 DKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQ-FPENTVKPVIIGYTKENPRPLENL 125
Query: 216 D---------------SKXXXXXXXXXXXAKIEGNNANAGDAIMLDKDGYVSETNATNIF 260
+ AK E + +AI L ++ V+E +++N+F
Sbjct: 126 EKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTEGSSSNVF 184
Query: 261 LVKKGRVLT-PHADYCLPGITRATXXXXXXXXXXXXXXRRISLSEFHTADEVWTTGTMGE 319
+K G + T P + L GITR + E DE++ T T E
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 320 ITPVVKIDGRIVGDGKVGPVTQRIQKVYK 348
ITPV++IDG+++ DGKVG T+++QK ++
Sbjct: 245 ITPVIEIDGKLIRDGKVGEWTRKLQKQFE 273
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 125/282 (44%), Gaps = 35/282 (12%)
Query: 108 DEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKG-----------K 156
D+IV ++ K+ D Q GDGV+E ++VYNG++F + EH+DRL K
Sbjct: 7 DQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTK 66
Query: 157 QKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSP-NNL 215
KF +++ +E + I+ + R P +NT ++ T P NL
Sbjct: 67 DKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQ-FPENTVKPVIIGYTKENPRPLENL 125
Query: 216 D---------------SKXXXXXXXXXXXAKIEGNNANAGDAIMLDKDGYVSETNATNIF 260
+ AK E + +AI L ++ V+ +++N+F
Sbjct: 126 EKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTSGSSSNVF 184
Query: 261 LVKKGRVLT-PHADYCLPGITRATXXXXXXXXXXXXXXRRISLSEFHTADEVWTTGTMGE 319
+K G + T P + L GITR + E DE++ T T E
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 320 ITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGVPIPSY 361
ITPV++IDG+++ DGKVG T+++QK + E+ +P P +
Sbjct: 245 ITPVIEIDGKLIRDGKVGEWTRKLQKQF-----ETKIPKPLH 281
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 125/282 (44%), Gaps = 35/282 (12%)
Query: 108 DEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKG-----------K 156
D+IV ++ K+ D Q GDGV+E ++VYNG++F + EH+DRL K
Sbjct: 7 DQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTK 66
Query: 157 QKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSP-NNL 215
KF +++ +E + I+ + R P +NT ++ T P NL
Sbjct: 67 DKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQ-FPENTVKPVIIGYTKENPRPLENL 125
Query: 216 D---------------SKXXXXXXXXXXXAKIEGNNANAGDAIMLDKDGYVSETNATNIF 260
+ AK E + +AI L ++ V+E +++N+F
Sbjct: 126 EKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTEGSSSNVF 184
Query: 261 LVKKGRVLT-PHADYCLPGITRATXXXXXXXXXXXXXXRRISLSEFHTADEVWTTGTMGE 319
+K G + T P + GITR + E DE++ T T E
Sbjct: 185 GIKDGILYTHPANNMIAKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 320 ITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGVPIPSY 361
ITPV++IDG+++ DGKVG T+++QK + E+ +P P +
Sbjct: 245 ITPVIEIDGKLIRDGKVGEWTRKLQKQF-----ETKIPKPLH 281
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 121/269 (44%), Gaps = 30/269 (11%)
Query: 108 DEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKG-----------K 156
D+IV ++ K+ D Q GDGV+E ++VYNG++F + EH+DRL K
Sbjct: 7 DQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTK 66
Query: 157 QKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSP-NNL 215
KF +++ +E + I+ + R P +NT ++ T P NL
Sbjct: 67 DKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQ-FPENTVKPVIIGYTKENPRPLENL 125
Query: 216 D---------------SKXXXXXXXXXXXAKIEGNNANAGDAIMLDKDGYVSETNATNIF 260
+ AK E + +AI L ++ V++ +++N+F
Sbjct: 126 EKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTKGSSSNVF 184
Query: 261 LVKKGRVLT-PHADYCLPGITRATXXXXXXXXXXXXXXRRISLSEFHTADEVWTTGTMGE 319
+K G + T P + L GITR + E DE++ T T E
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 320 ITPVVKIDGRIVGDGKVGPVTQRIQKVYK 348
ITPV++IDG+++ DGKVG T+++QK ++
Sbjct: 245 ITPVIEIDGKLIRDGKVGEWTRKLQKQFE 273
>pdb|2Y4R|A Chain A, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
pdb|2Y4R|B Chain B, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
Length = 292
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 114/279 (40%), Gaps = 35/279 (12%)
Query: 101 NLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFG 160
++L WV R A++SV D + GDG++E L V G LE HL RL +G ++
Sbjct: 21 HMLDWVDG----RPAAELSVRDRGLAYGDGLFETLAVRAGTPRLLERHLARLEEGCRRLA 76
Query: 161 ----------KVIVWYMEL------VIMVKQAIFRTLI-------RNVLPEWKPPVYDNT 197
+++ + L +I+ + R R +L P Y
Sbjct: 77 IPLDTAALRQELLAFCAALGDGVAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPER 136
Query: 198 H---GVNLVTATTRRNSPNNLDSKXXXXXXXXXXXAKIEGNNANAGDAIMLDKDGYVSET 254
H GV L T R + L + A+ E ++A + +MLD V E
Sbjct: 137 HWQQGVRLFACRT-RLAEQPLLAGLKHLNRLEQVLARAEWSDAGHAEGLMLDVHERVVEG 195
Query: 255 NATNIFLVKKGRVLTPHADYC-LPGITRATXXXXXXXXXXXXXXRRISLSEFHTADEVWT 313
+N+ LV G ++ P C + G+ RA R +S++E TADEV+
Sbjct: 196 VFSNLLLVLDGTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFL 255
Query: 314 TGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETE 352
+ I PV +D + VG +T+++Q + + +
Sbjct: 256 CNSQFGIWPVRALDEHVW---PVGELTRKLQDQLRDDLD 291
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 104/245 (42%), Gaps = 19/245 (7%)
Query: 119 SVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFG-KVIVWYMELVIMVKQAI 177
S+F+ +QG V+E LR Y+ F +H RL + F + + + E ++K
Sbjct: 32 SLFEKSLQGA--VYETLRTYSRAPFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGA 89
Query: 178 --FRTLIR----------NVLPEWKP-PVYDNTHGVNLVTATTRRNSPNNLDSKXXXXXX 224
F+ +R VL + P + D GV + + RR +
Sbjct: 90 DEFKQEVRIKVYLFPDSGEVLFVFSPLNIPDLETGVEVKISNVRRIPDLSTPPALKITGR 149
Query: 225 XXXXXAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADY-CLPGITRAT 283
A+ E + D I+L +G V E + +N+FLVK+G+++TP D L GITR
Sbjct: 150 TDIVLARRE--IVDCYDVILLGLNGQVCEGSFSNVFLVKEGKLITPSLDSGILDGITREN 207
Query: 284 XXXXXXXXXXXXXXRRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRI 343
R + + E ADE + T T + PV +++ + + GPVT +
Sbjct: 208 VIKLAKSLEIPVEERVVWVWELFEADEXFLTHTSAGVVPVRRLNEHSFFEEEPGPVTATL 267
Query: 344 QKVYK 348
+ ++
Sbjct: 268 XENFE 272
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 91/240 (37%), Gaps = 33/240 (13%)
Query: 117 KVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVK-- 174
++V D Q GDG + RV +GKV L H+ RL Q+ ++ +L +K
Sbjct: 11 SLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTL 70
Query: 175 -----QAIFRTLIR-----------NVLPEWK-------PPVYDN--THGVNLVTATTR- 208
+ + +I N P + P YD G+ L + R
Sbjct: 71 AAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSPVRL 130
Query: 209 -RNSPNNLDSKXXXXXXXXXXXAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRV 267
RN P+ K + +E NA+ +A++LD +G+V+E A N+F K V
Sbjct: 131 GRN-PHLAGIKHLNRLEQVLIRSHLEQTNAD--EALVLDSEGWVTECCAANLFWRKGNVV 187
Query: 268 LTPHADYC-LPGITRATXXXXXXXXXXXXXXRRISLSEFHTADEVWTTGTMGEITPVVKI 326
TP D + GI R + SL E ADE+ + + PV
Sbjct: 188 YTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPVCAC 247
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 239 AGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHA-DYCLPGITRATXXXXXXXXXXXXXX 297
A DA+ + + +V+ET N+FL++ + TP D LPGITRA
Sbjct: 160 ADDALFFNTENHVTETTCANLFLIENNILYTPRVEDGILPGITRARLISHCQQHKXSVQE 219
Query: 298 RRISLSEFHTADEVWTTGTMGEITPVVKIDGRI 330
++ AD V+ T ++ I V+ +D I
Sbjct: 220 ISLTKKRIEDADAVFLTNSLQGIRRVLSLDNII 252
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 241 DAIMLDKDGYVSETNATNI-FLVKKGRVLTPHADYCLPGITRATXXXXXXXXXXXXXXRR 299
D I D D + +T + F K R +P D LPG T+A +
Sbjct: 207 DVIFTDGDRVLEGATSTVVSFKGDKIRTPSPGGDI-LPGTTQAALFAHATEKGWRCKEKD 265
Query: 300 ISLSEFHTADEVWTTGTMGEITPVVKIDG 328
+S+ + AD VW ++ V ++DG
Sbjct: 266 LSIDDLFGADSVWLVSSVRGPVRVTRLDG 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,803,358
Number of Sequences: 62578
Number of extensions: 436011
Number of successful extensions: 1065
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 30
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)