Query 046821
Match_columns 361
No_of_seqs 264 out of 1569
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:46:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12479 branched-chain amino 100.0 3.1E-55 6.7E-60 419.3 28.8 255 102-359 4-292 (299)
2 PRK08320 branched-chain amino 100.0 1.1E-54 2.4E-59 413.5 29.0 252 102-356 3-288 (288)
3 PRK13356 aminotransferase; Pro 100.0 3.7E-54 8E-59 409.6 29.3 247 100-352 5-283 (286)
4 PLN02845 Branched-chain-amino- 100.0 3.3E-54 7.1E-59 417.6 29.3 249 102-355 41-326 (336)
5 TIGR01122 ilvE_I branched-chai 100.0 4.9E-54 1.1E-58 411.0 27.5 246 105-353 1-286 (298)
6 PRK06606 branched-chain amino 100.0 5.6E-54 1.2E-58 412.0 27.9 248 103-353 8-294 (306)
7 PRK12400 D-amino acid aminotra 100.0 1.4E-53 3.1E-58 406.3 28.9 247 103-357 6-288 (290)
8 PRK07544 branched-chain amino 100.0 1.4E-53 2.9E-58 406.8 26.4 247 101-353 8-288 (292)
9 PRK06680 D-amino acid aminotra 100.0 3.3E-53 7.1E-58 403.0 28.3 245 103-355 4-285 (286)
10 TIGR01121 D_amino_aminoT D-ami 100.0 7.3E-53 1.6E-57 398.7 28.2 239 104-350 2-274 (276)
11 PRK07650 4-amino-4-deoxychoris 100.0 8.7E-53 1.9E-57 399.6 27.5 246 103-353 1-277 (283)
12 cd01558 D-AAT_like D-Alanine a 100.0 5.8E-53 1.3E-57 398.1 26.2 236 105-347 1-270 (270)
13 PRK07849 4-amino-4-deoxychoris 100.0 2E-51 4.3E-56 391.7 29.6 243 102-351 7-288 (292)
14 PRK06092 4-amino-4-deoxychoris 100.0 1.6E-50 3.5E-55 381.1 27.7 234 103-348 1-266 (268)
15 PRK13357 branched-chain amino 100.0 5.5E-50 1.2E-54 391.1 26.8 244 105-353 42-343 (356)
16 TIGR03461 pabC_Proteo aminodeo 100.0 8.1E-50 1.8E-54 374.9 26.4 228 105-344 1-260 (261)
17 PLN03117 Branched-chain-amino- 100.0 8.1E-50 1.8E-54 389.4 27.1 247 102-354 43-339 (355)
18 TIGR01123 ilvE_II branched-cha 100.0 8.2E-50 1.8E-54 384.3 25.8 244 105-353 1-301 (313)
19 PRK09266 hypothetical protein; 100.0 8.2E-50 1.8E-54 376.0 25.1 232 102-350 3-261 (266)
20 cd01557 BCAT_beta_family BCAT_ 100.0 1.3E-49 2.8E-54 377.0 26.2 231 117-352 1-278 (279)
21 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 2.8E-49 6.2E-54 369.8 25.9 223 122-347 1-256 (256)
22 PLN02782 Branched-chain amino 100.0 1.2E-48 2.6E-53 385.2 28.1 246 104-354 95-391 (403)
23 COG0115 IlvE Branched-chain am 100.0 3.7E-48 8E-53 367.9 27.8 246 102-353 2-282 (284)
24 cd01559 ADCL_like ADCL_like: 4 100.0 1.6E-48 3.6E-53 363.7 24.7 218 122-347 1-249 (249)
25 PLN02259 branched-chain-amino- 100.0 2E-47 4.3E-52 374.9 27.1 245 104-354 81-376 (388)
26 PLN02883 Branched-chain amino 100.0 1.4E-45 3E-50 361.0 27.2 244 103-354 76-372 (384)
27 KOG0975 Branched chain aminotr 100.0 2E-40 4.4E-45 313.0 20.0 244 105-354 70-370 (379)
28 PRK07546 hypothetical protein; 100.0 2.5E-39 5.3E-44 294.4 21.9 188 128-326 3-209 (209)
29 PF01063 Aminotran_4: Aminotra 100.0 5.5E-38 1.2E-42 288.8 18.9 198 143-347 1-231 (231)
30 PRK07101 hypothetical protein; 100.0 3.4E-32 7.4E-37 243.1 17.1 174 129-320 3-187 (187)
31 cd05569 PTS_IIB_fructose PTS_I 45.3 60 0.0013 25.4 5.4 56 274-331 10-75 (96)
32 KOG0975 Branched chain aminotr 38.1 1.8 4E-05 42.3 -5.2 134 12-155 63-198 (379)
33 cd03079 GST_N_Metaxin2 GST_N f 35.6 89 0.0019 23.4 4.7 59 266-333 2-63 (74)
34 TIGR00829 FRU PTS system, fruc 35.0 62 0.0013 24.9 3.8 45 274-318 9-63 (85)
35 PRK10474 putative PTS system f 34.1 63 0.0014 25.0 3.8 49 282-331 4-61 (88)
36 PF14144 DOG1: Seed dormancy c 30.9 53 0.0011 25.0 2.8 25 56-80 16-40 (80)
37 cd03054 GST_N_Metaxin GST_N fa 30.5 2E+02 0.0043 20.4 6.5 52 280-343 18-69 (72)
38 cd03038 GST_N_etherase_LigE GS 27.6 2.3E+02 0.0049 20.9 5.9 64 279-345 17-81 (84)
39 cd03080 GST_N_Metaxin_like GST 27.1 2.3E+02 0.005 20.4 5.7 56 280-347 19-74 (75)
40 KOG1769 Ubiquitin-like protein 25.3 46 0.00099 26.5 1.6 21 2-22 46-66 (99)
41 cd03045 GST_N_Delta_Epsilon GS 24.1 76 0.0017 22.6 2.6 58 283-343 14-72 (74)
42 COG1445 FrwB Phosphotransferas 23.5 1.1E+02 0.0024 25.3 3.6 36 282-317 22-66 (122)
43 PF13051 DUF3912: Protein of u 22.8 75 0.0016 22.6 2.1 37 256-292 31-68 (68)
44 cd03057 GST_N_Beta GST_N famil 20.7 96 0.0021 22.4 2.6 61 283-346 13-75 (77)
45 PF03698 UPF0180: Uncharacteri 20.5 1.6E+02 0.0035 22.5 3.7 64 283-349 12-77 (80)
46 PRK10427 putative PTS system f 20.3 1.5E+02 0.0032 24.2 3.8 57 274-331 14-80 (114)
47 PRK03094 hypothetical protein; 20.2 1.8E+02 0.004 22.2 3.9 64 283-349 12-77 (80)
48 cd03059 GST_N_SspA GST_N famil 20.1 1.3E+02 0.0029 21.1 3.2 59 282-345 13-71 (73)
No 1
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=3.1e-55 Score=419.34 Aligned_cols=255 Identities=41% Similarity=0.658 Sum_probs=227.6
Q ss_pred ceEEECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHH
Q 046821 102 LLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTL 181 (361)
Q Consensus 102 ~~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l 181 (361)
.++|+||++++.+++.|++.||||+|||||||||++++|++++|++|++||.+||+.|+++. +++.+++.+.+.+++
T Consensus 4 ~~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~l~i~~---p~~~~~l~~~i~~~i 80 (299)
T PRK12479 4 QYIYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSYGGNVFCLKEHVKRLYESAKSILLTI---PLTVDEMEEAVLQTL 80 (299)
T ss_pred cEEEECCEEeEHHHCccccccchhheeeeEEEEEEEECCEecCHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999984 346788999999888
Q ss_pred HHc----------cCC-----CCCCC---------------CCC---CCCCeEEEEeccccCCCCCcCcccccccHHHHH
Q 046821 182 IRN----------VLP-----EWKPP---------------VYD---NTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNI 228 (361)
Q Consensus 182 ~~~----------~~~-----~~~~p---------------~~~---~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i 228 (361)
.++ +.. .+.++ .+. ..+|+++.++..+|..+..+.+.+||.||+.++
T Consensus 81 ~~~~~~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~~~~r~~~~~~~~~~K~~nyl~~v 160 (299)
T PRK12479 81 QKNEYADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVVSVASRRNTPDALDPRIKSMNYLNNV 160 (299)
T ss_pred HHcCCCCeEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCChhHHhCCeEEEEEeEeccCCCccCccchhhhhHHHH
Confidence 764 000 01110 000 146888888888887766666799999999999
Q ss_pred HHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhh
Q 046821 229 LAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHT 307 (361)
Q Consensus 229 ~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~ 307 (361)
+++++|+++|+||+||+|++|+|+|++++|||+++||+|+||+.+ |+|+||||+.|+++|+++|++|+|+.++++||.+
T Consensus 161 la~~ea~~~g~de~l~ld~~g~v~E~s~sNlf~v~~~~l~TP~l~~giL~GItR~~il~~~~~~g~~v~e~~i~~~~L~~ 240 (299)
T PRK12479 161 LVKIEAAQAGVLEALMLNQQGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYV 240 (299)
T ss_pred HHHHHHHHcCCCEEEEEcCCCcEEECCceEEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999999999999985 7999999999999999999999999999999999
Q ss_pred cceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHHhhcCccCC
Q 046821 308 ADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGVPIP 359 (361)
Q Consensus 308 adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 359 (361)
|||+|+|||++||+||.+||++.++++++||++++|+++|++.....+..++
T Consensus 241 adevfltnS~~gi~PV~~id~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 292 (299)
T PRK12479 241 ADEVFLTGTAAELIPVVKVDSREIGDGKPGSVTKQLTEEFKKLTRERGVRVP 292 (299)
T ss_pred CCeeeeecCcccEEEEEEECCEEcCCCCcCHHHHHHHHHHHHHHhhcCCCch
Confidence 9999999999999999999999999888999999999999998887776544
No 2
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.1e-54 Score=413.49 Aligned_cols=252 Identities=42% Similarity=0.706 Sum_probs=224.0
Q ss_pred ceEEECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHH
Q 046821 102 LLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTL 181 (361)
Q Consensus 102 ~~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l 181 (361)
+++|+||++++..++.++++||||+||||||||+++++|++++|++|++||.+||+.|+++. +++.+.+++.+.+++
T Consensus 3 ~~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~~v~~g~~~~l~~Hl~RL~~Sa~~l~i~~---p~~~~~l~~~i~~~i 79 (288)
T PRK08320 3 QLIYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAYNGRVFRLKEHIDRLYDSAKAIMLEI---PLSKEEMTEIVLETL 79 (288)
T ss_pred eEEEECCEEEEHHHCcccccchhhhhcceEEEEEEEECCEeecHHHHHHHHHHHHHhhCCCC---CCCHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999984 346778888998888
Q ss_pred HHc----------cCC-----CCCCC---------------CC---CCCCCeEEEEeccccCCCCCcCcccccccHHHHH
Q 046821 182 IRN----------VLP-----EWKPP---------------VY---DNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNI 228 (361)
Q Consensus 182 ~~~----------~~~-----~~~~p---------------~~---~~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i 228 (361)
+++ +.. .+.++ .+ ...+|+++.++...|..++.+.+.+|++||+.++
T Consensus 80 ~~~~~~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~K~~nyl~~v 159 (288)
T PRK08320 80 RKNNLRDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYPGELYEKGLKVITVSTRRNRPDALSPQVKSLNYLNNI 159 (288)
T ss_pred HhcCCCCEEEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCChhHHhcCeEEEEEeeeccCCCCcCccchhhhhHHHH
Confidence 764 110 01010 00 0136888888888887666666789999999999
Q ss_pred HHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhh
Q 046821 229 LAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHT 307 (361)
Q Consensus 229 ~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~ 307 (361)
+++++|+++|+||+|++|++|+|+||+++|||+++||+|+||+.+ ++|+||||+.|+++|++.|++|+|+.++++||.+
T Consensus 160 ~a~~~A~~~g~de~L~ld~~g~v~E~s~sNlf~~~~~~l~TP~~~~~~L~GitR~~ll~~~~~~g~~v~e~~l~~~dL~~ 239 (288)
T PRK08320 160 LAKIEANLAGVDEAIMLNDEGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPVREELFTLHDLYT 239 (288)
T ss_pred HHHHHHHHcCCCEEEEECCCCeEEEcCcEEEEEEECCEEECCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEECCHHHHHh
Confidence 999999999999999999999999999999999999999999985 7999999999999999999999999999999999
Q ss_pred cceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHHhhcCc
Q 046821 308 ADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGV 356 (361)
Q Consensus 308 adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~ 356 (361)
|||+|+|||++||+||.+|+++.++++++||++++|++.|++.....|+
T Consensus 240 ade~f~~ns~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~ 288 (288)
T PRK08320 240 ADEVFLTGTAAEVIPVVKVDGRVIGDGKPGPITKKLLEEFRELTKKDGT 288 (288)
T ss_pred CCEEEEecChhhEEEEEEECCEECCCCCcCHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999998888999999999999887766553
No 3
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=3.7e-54 Score=409.56 Aligned_cols=247 Identities=26% Similarity=0.345 Sum_probs=217.2
Q ss_pred CCceEEECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHH
Q 046821 100 KNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFR 179 (361)
Q Consensus 100 ~~~~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~ 179 (361)
.++++|+||++++.+.+.|++.||||+||||||||+|+++|++++|++|++||.+||+.|+++. +++.+.|.+.+.+
T Consensus 5 ~~~~~~~nG~~~~~~~~~i~~~drg~~yGdgvFEtir~~~g~~~~l~~Hl~RL~~Sa~~L~i~~---~~~~~~l~~~i~~ 81 (286)
T PRK13356 5 SNTWTFFDGEWHEGNVPIMGPADHAAWLGSTVFDGARAFEGVTPDLDLHCARVNRSAEALGLKP---TVSAEEIEALARE 81 (286)
T ss_pred CCceEEECCEEcchhhcccccccchhhhcceeEEEEEEecCCCCCHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999999999999999999999983 3467889989988
Q ss_pred HHHHcc----------C----CC--CC-C----CC---------CCCCCCeEEEEeccccCCCCCcCcccc-cccHHHHH
Q 046821 180 TLIRNV----------L----PE--WK-P----PV---------YDNTHGVNLVTATTRRNSPNNLDSKIH-HNNLLNNI 228 (361)
Q Consensus 180 ~l~~~~----------~----~~--~~-~----p~---------~~~~~gi~l~~~~~~r~~~~~~~~~~K-t~n~l~~i 228 (361)
++.++- + .. .. + +. .....|+++.+++.+|..+..+...+| ++||+.++
T Consensus 82 ~i~~~~~~~~~~ir~~v~rg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~K~~~nyl~~v 161 (286)
T PRK13356 82 GLKRFDPDTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEPTGFSLTLSPFRRPTLEMAPTDAKAGCLYPNNA 161 (286)
T ss_pred HHHHcCCCCcEEEEEEEEeccCcccCcCCCcCCceEEEEEEccCCCCCCcEEEEEeeeecCCCCCCCccceeccchHHHH
Confidence 887650 0 00 10 1 00 011368999999888876655556788 56899999
Q ss_pred HHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhh
Q 046821 229 LAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHT 307 (361)
Q Consensus 229 ~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~ 307 (361)
+++++|+++|+||+|++|++|+|+||+++|||+++||+|+||+.+ ++|+||||+.|+++|++.|++|+|+.++++||.+
T Consensus 162 la~~ea~~~g~deal~ld~~G~v~E~~~sNlf~v~~~~l~TP~~~~~~L~GItR~~vi~~a~~~gi~v~e~~i~~~eL~~ 241 (286)
T PRK13356 162 RALREARSRGFDNALVLDMLGNVAETATSNVFMVKDGVVFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLE 241 (286)
T ss_pred HHHHHHHHcCCCEEEEECCCCCEEEcCceEEEEEECCEEEcCCCCCCcccCHHHHHHHHHHHHcCCeEEEEecCHHHHHh
Confidence 999999999999999999999999999999999999999999975 7999999999999999999999999999999999
Q ss_pred cceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHHh
Q 046821 308 ADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETE 352 (361)
Q Consensus 308 adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~ 352 (361)
|||+|+|||+.||+||.+||++.++ +||++++|+++|++..+
T Consensus 242 adevfltns~~gi~PV~~id~~~~~---~g~~~~~l~~~~~~~~~ 283 (286)
T PRK13356 242 ADEVFSTGNYSKVVPVTRFDDRSLQ---PGPVTRRARELYWDWAH 283 (286)
T ss_pred cCceEEecChheEEEEEEECCEEec---CChHHHHHHHHHHHHHh
Confidence 9999999999999999999999995 58999999999987654
No 4
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=3.3e-54 Score=417.59 Aligned_cols=249 Identities=26% Similarity=0.430 Sum_probs=220.5
Q ss_pred ceEEECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHH
Q 046821 102 LLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTL 181 (361)
Q Consensus 102 ~~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l 181 (361)
..+|+||+|++.+++.|++.||||+||||||||||+++|++++|++|++||.+||+.|+++. +++.+++++.+.+++
T Consensus 41 ~~~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~~G~~~~le~Hl~RL~~Sa~~L~i~~---p~~~~~l~~~i~~~i 117 (336)
T PLN02845 41 YSSVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIRDGHLYELDAHLDRFLRSAAKAKIPL---PFDRATLRRILLQTV 117 (336)
T ss_pred eeEEECCEEccHHHCcccccccceeecceEEEEEEEECCEEcCHHHHHHHHHHHHHhhCCCC---CCCHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999984 346788999999988
Q ss_pred HHcc---------C----CC--CCC-----C--------C--CC-CCCCeEEEEeccccCCCCCcCcccccccHHHHHHH
Q 046821 182 IRNV---------L----PE--WKP-----P--------V--YD-NTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILA 230 (361)
Q Consensus 182 ~~~~---------~----~~--~~~-----p--------~--~~-~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i~a 230 (361)
.++- + .. +.+ | . .. ...|+++.+++.++..+ ..+++||+||+.++++
T Consensus 118 ~~~~~~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~gv~l~~~~~~~~~~--~~~~~Kt~nyl~~vla 195 (336)
T PLN02845 118 AASGCRNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQDRPEGVKVVTSSVPIKPP--QFATVKSVNYLPNALS 195 (336)
T ss_pred HhcCCCcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEccccccccccCCeEEEEeeeeecCC--ccccchhhhhHHHHHH
Confidence 7650 0 00 100 0 0 01 14688888888776433 3478999999999999
Q ss_pred HHHHHhCCCCeEEEEcCCCcEEecCceeEEEEe-CCeEEcCCCCCCCCchHHHHHHHHHHhC---C--CcEEEEecCHHh
Q 046821 231 KIEGNNANAGDAIMLDKDGYVSETNATNIFLVK-KGRVLTPHADYCLPGITRATVMELVVKE---N--LVLEERRISLSE 304 (361)
Q Consensus 231 ~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~-~g~l~TP~~~~iL~GItR~~vl~~~~~~---g--~~v~e~~i~~~d 304 (361)
+++|+++|+||+||+|++|+|+||+++||||++ ||+|+||+.+++|+||||+.||++|+++ | ++|+|+.++++|
T Consensus 196 ~~eA~~~G~deaLlln~~G~V~Egt~sNiF~v~~~~~l~TP~l~~iL~GItR~~vlela~~~~~~G~~i~V~E~~i~~~e 275 (336)
T PLN02845 196 QMEAEERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDKILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEE 275 (336)
T ss_pred HHHHHHcCCCEEEEECCCCcEEEcCcceEEEEEECCEEEeCCCCCcCccHHHHHHHHHHHhhhccCCceEEEEEecCHHH
Confidence 999999999999999999999999999999885 9999999987899999999999999986 8 899999999999
Q ss_pred HhhcceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHHhhcC
Q 046821 305 FHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESG 355 (361)
Q Consensus 305 L~~adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~~~~ 355 (361)
|.+|||||+|||++||+||.+||++.++++++||++++|++.|++..+..+
T Consensus 276 L~~AdEvFltnS~~gv~PV~~id~~~~~~g~~gp~t~~L~~~~~~~~~~~~ 326 (336)
T PLN02845 276 AKAADEMMLIGSGVPVLPIVSWDGQPIGDGKVGPITLALHDLLLDDMRSGP 326 (336)
T ss_pred HhcCCEEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999988899999999999999888775
No 5
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=4.9e-54 Score=410.98 Aligned_cols=246 Identities=37% Similarity=0.597 Sum_probs=221.7
Q ss_pred EECCeeecCCCCccCcCCcccccCceEEEEEEEECC----eecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHH
Q 046821 105 WVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNG----KVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRT 180 (361)
Q Consensus 105 ~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G----~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~ 180 (361)
|+||++++.+++.|++.||||+||||||||+|+++| ++++|++|++||.+||+.|+++. +++.+++.+.+.++
T Consensus 1 ~~ng~~v~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~~~~~l~~Hl~RL~~Sa~~l~i~~---~~~~~~l~~~i~~~ 77 (298)
T TIGR01122 1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDKGPAIFRLKEHIQRLYDSAKIYRMEI---PYSKEELMEATRET 77 (298)
T ss_pred CcCCEEEEhhhcccChhhhhhhccceEEEEEEEEcCCCcceeeChHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHH
Confidence 789999999999999999999999999999999999 99999999999999999999984 34678899999998
Q ss_pred HHHcc----------C---C--CCCC---------------CCCC----CCCCeEEEEeccccCCCCCcCccccccc-HH
Q 046821 181 LIRNV----------L---P--EWKP---------------PVYD----NTHGVNLVTATTRRNSPNNLDSKIHHNN-LL 225 (361)
Q Consensus 181 l~~~~----------~---~--~~~~---------------p~~~----~~~gi~l~~~~~~r~~~~~~~~~~Kt~n-~l 225 (361)
++++- . . .+.+ +.+. ..+|+++.+++.+|..+..+.+.+||+| |+
T Consensus 78 i~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~r~~~~~~~~~~K~~~~yl 157 (298)
T TIGR01122 78 LRKNNLRSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVSSWRRNAPNTIPTAAKAGGNYL 157 (298)
T ss_pred HHhcCCCCEEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEEEEEcCCCCCcCccchhhhhhH
Confidence 87650 0 0 0111 0111 2468999999988877766668999997 99
Q ss_pred HHHHHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHh
Q 046821 226 NNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSE 304 (361)
Q Consensus 226 ~~i~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~d 304 (361)
.+++++++|+++|+||+|++|++|+|+||+++|||+++||+|+||+.+ ++|+||||+.|+++|++.|++|+|+.++++|
T Consensus 158 ~~v~a~~~a~~~g~de~l~ld~~g~v~E~s~sNlf~v~~~~l~TP~~~~~~L~GItR~~il~la~~~g~~v~e~~i~~~e 237 (298)
T TIGR01122 158 NSLLAKSEARRHGYDEAILLDVEGYVAEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREE 237 (298)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCEEECCceEEEEEECCEEECCCCCCCcCcchHHHHHHHHHHHcCCcEEEEeCCHHH
Confidence 999999999999999999999999999999999999999999999985 7999999999999999999999999999999
Q ss_pred HhhcceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHHhh
Q 046821 305 FHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEE 353 (361)
Q Consensus 305 L~~adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~~ 353 (361)
|.+|||+|+|||++||+||.+|+++.++++++||++++|++.|++...+
T Consensus 238 L~~adevfltns~~gv~PV~~id~~~~~~~~~g~~~~~l~~~~~~~~~~ 286 (298)
T TIGR01122 238 LYTADEAFFTGTAAEITPIREVDGRKIGNGRRGPVTKKLQEAFFDLVTG 286 (298)
T ss_pred HhhCCEEEEcCCcceEEEEEEECCEECCCCCCChHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999888999999999999987774
No 6
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=5.6e-54 Score=411.99 Aligned_cols=248 Identities=36% Similarity=0.591 Sum_probs=222.6
Q ss_pred eEEECCeeecCCCCccCcCCcccccCceEEEEEEEECCe----ecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHH
Q 046821 103 LAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGK----VFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIF 178 (361)
Q Consensus 103 ~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~----~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~ 178 (361)
++|+||++++.+++.|++.||||+||||||||+|+++|+ +++|++|++||.+||+.|+++. +++.+.+.+.+.
T Consensus 8 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEtir~~~g~~~~~~~~l~~Hl~RL~~Sa~~l~i~~---~~~~~~l~~~i~ 84 (306)
T PRK06606 8 YIWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGPAIFRLREHTKRLFNSAKILRMEI---PYSVDELMEAQR 84 (306)
T ss_pred cEEECCEEEEhHHcccChhhhhhhhcceeEEEEEEecCCCCCeeeChHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHH
Confidence 699999999999999999999999999999999999998 9999999999999999999994 346788999999
Q ss_pred HHHHHcc----------CC-----CCCC--------------CCCC----CCCCeEEEEeccccCCCCCcCccccc-ccH
Q 046821 179 RTLIRNV----------LP-----EWKP--------------PVYD----NTHGVNLVTATTRRNSPNNLDSKIHH-NNL 224 (361)
Q Consensus 179 ~~l~~~~----------~~-----~~~~--------------p~~~----~~~gi~l~~~~~~r~~~~~~~~~~Kt-~n~ 224 (361)
+++..+- .. .+.+ +.+. ..+|+++.+++.+|..+..+++.+|+ +||
T Consensus 85 ~~i~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~K~~~ny 164 (306)
T PRK06606 85 EVVRKNNLKSAYIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLGEEALEKGIRVKVSSWTRHAPNSIPTRAKASGNY 164 (306)
T ss_pred HHHHhcCCCCEEEEEEEEecCCccCcCCCCCCceEEEEEeccccccCcccccCCeEEEEeeEecCCCCCcCcchhhhhcc
Confidence 9888750 00 0100 0111 23689999998888777666688995 699
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHH
Q 046821 225 LNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLS 303 (361)
Q Consensus 225 l~~i~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~ 303 (361)
+.+++++++|+++|+||+|++|++|+|+||+++|||+++||+|+||+.+ |+|+||||+.|+++|++.|++|+|+.++++
T Consensus 165 l~~vla~~ea~~~G~de~l~l~~~g~v~E~~~sNlf~v~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~ 244 (306)
T PRK06606 165 LNSILAKTEARRNGYDEALLLDVEGYVSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRD 244 (306)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCEEEcCceEEEEEECCEEECCCCcCCcCCCHHHHHHHHHHHHcCCcEEEEeCCHH
Confidence 9999999999999999999999999999999999999999999999975 799999999999999999999999999999
Q ss_pred hHhhcceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHHhh
Q 046821 304 EFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEE 353 (361)
Q Consensus 304 dL~~adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~~ 353 (361)
||.+|||+|+|||++||+||.+||++.++++++||++++|+++|.+...+
T Consensus 245 eL~~AdevfltnS~~gi~PV~~id~~~~~~g~~g~~~~~L~~~~~~~~~~ 294 (306)
T PRK06606 245 ELYIADEVFFTGTAAEVTPIREVDGRQIGNGKRGPITEKLQSAYFDIVRG 294 (306)
T ss_pred HHhhCCEEEEcCCcceEEEEEEECcEECCCCCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999888999999999999988774
No 7
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.4e-53 Score=406.25 Aligned_cols=247 Identities=26% Similarity=0.419 Sum_probs=212.9
Q ss_pred eEEECCeeecCC--CCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHH
Q 046821 103 LAWVGDEIVPRD--DAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRT 180 (361)
Q Consensus 103 ~~~~ng~~~~~~--~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~ 180 (361)
++|+||++++.+ .+.|++.||||+||||||||||+++|++++|++|++||.+||+.|+++. +++.+++++.+.++
T Consensus 6 ~~~~ng~~v~~~~~~~~i~~~drgl~yGdgvFEtir~~~G~~~~l~~Hl~RL~~Sa~~L~i~~---p~~~~~l~~~l~~~ 82 (290)
T PRK12400 6 FVLWNDAVIDTTKQKTYIELEERGLQFGDGVYEVIRLYKGNFHLLDPHITRLYRSMEEIELTL---PFSKAELITLLYKL 82 (290)
T ss_pred EEEECCEEechHHcCceeccccchhhhcceEEEEEEEECCEecccHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHH
Confidence 799999999998 4559999999999999999999999999999999999999999999994 34677899999988
Q ss_pred HHHcc------C----C------CCCCCCC-----------------CCCCCeEEEEeccccCCCCCcCcccccccHHHH
Q 046821 181 LIRNV------L----P------EWKPPVY-----------------DNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNN 227 (361)
Q Consensus 181 l~~~~------~----~------~~~~p~~-----------------~~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~ 227 (361)
+.++- + . .+.++.. ....|+++...+..+. ..+++||+||+.+
T Consensus 83 ~~~~~~~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Kt~nyl~~ 158 (290)
T PRK12400 83 IENNNFHEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEYGVRAISEPDTRW----LRCDIKSLNLLPN 158 (290)
T ss_pred HHhcCCCCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEEEecccCchhHHhcCcEEEECCCCCc----cCCCCcccccHHH
Confidence 87641 0 0 0001000 0123444443332221 2367899999999
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHh
Q 046821 228 ILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFH 306 (361)
Q Consensus 228 i~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~ 306 (361)
++++++|++.|+||+|++| +|+|+||+++|||+++||+|+||+.+ |+|+||||+.||++|+++|++|+|+.++++||.
T Consensus 159 vla~~ea~~~g~deaL~l~-~g~v~E~t~sNif~v~~~~l~TPpl~~g~L~GItR~~llela~~~gi~v~E~~i~~~eL~ 237 (290)
T PRK12400 159 ILAATKAERKGCKEALFVR-NGTVTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVY 237 (290)
T ss_pred HHHHHHHHHcCCCEEEEEc-CCEEEEcCceEEEEEECCEEEeCCCCCCcCcCHHHHHHHHHHHHcCCcEEEEeCCHHHHH
Confidence 9999999999999999996 89999999999999999999999985 799999999999999999999999999999999
Q ss_pred hcceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHHhhcCcc
Q 046821 307 TADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGVP 357 (361)
Q Consensus 307 ~adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~ 357 (361)
+|||+|+|||+.||+||.+|+++.++++++||++++|++.|++...+..+.
T Consensus 238 ~Adevfltns~~gv~PV~~i~~~~~~~~~~g~~t~~l~~~~~~~~~~~~~~ 288 (290)
T PRK12400 238 QADECFFTGTTIEILPMTHLDGTAIQDGQVGPITKMLQRSFSQSLLQSNMS 288 (290)
T ss_pred hCCeeeEccCcceEEEEEEECCEECCCCCcCHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999998889999999999999998887654
No 8
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=1.4e-53 Score=406.82 Aligned_cols=247 Identities=32% Similarity=0.460 Sum_probs=216.9
Q ss_pred CceEEECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHH
Q 046821 101 NLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRT 180 (361)
Q Consensus 101 ~~~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~ 180 (361)
+.++|+||++++.+.+.|+++||||+||||||||+++++|++++|++|++||++||+.|+|+. +.+.+.+.+.+.++
T Consensus 8 ~~~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~l~i~~---~~~~~~l~~~i~~~ 84 (292)
T PRK07544 8 DGFIWMDGELVPWRDAKVHVLTHGLHYASSVFEGERAYGGKIFKLREHSERLRRSAELLDFEI---PYSVAEIDAAKKET 84 (292)
T ss_pred CCeEEECCEEEEhHHCccChhhhHhhhcceeEEeeEeeCCcccChHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHH
Confidence 356999999999999999999999999999999999999999999999999999999999984 34677899999998
Q ss_pred HHHcc-----C--------C--CCCCC--------------C-C---CCCCCeEEEEeccccCCCCCcCccccc-ccHHH
Q 046821 181 LIRNV-----L--------P--EWKPP--------------V-Y---DNTHGVNLVTATTRRNSPNNLDSKIHH-NNLLN 226 (361)
Q Consensus 181 l~~~~-----~--------~--~~~~p--------------~-~---~~~~gi~l~~~~~~r~~~~~~~~~~Kt-~n~l~ 226 (361)
++.+- + . -+.++ . + ...+|+++.+++.+|..+..+...+|+ .||+.
T Consensus 85 i~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~k~~~~yl~ 164 (292)
T PRK07544 85 LAANGLTDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDIAKWRRPDPETAPSAAKAAGLYMI 164 (292)
T ss_pred HHhcCCCCeEEEEEEEecCCCCCcCCCCCCcEEEEEEeccccccCccccCCCEEEEEeEEEcCCCCCcCHhhhhhcccHH
Confidence 87650 0 0 01110 0 1 113689999998888766655556674 57999
Q ss_pred HHHHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCCCCCCchHHHHHHHHHHhCCCcEEEEecCHHhHh
Q 046821 227 NILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATVMELVVKENLVLEERRISLSEFH 306 (361)
Q Consensus 227 ~i~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~ 306 (361)
+++++++|+++|+||+||+|++|+|+||+++|||+++||+|+||+.+++|+||||+.|+++|+++|++|+|+.++++||.
T Consensus 165 ~vla~~~A~~~G~deal~ld~~g~V~E~~~sNlf~v~~~~l~TP~~~~~L~GItR~~vl~~a~~~g~~v~e~~i~~~eL~ 244 (292)
T PRK07544 165 CTISKHAAEAKGYADALMLDYRGYVAEATGANIFFVKDGVIHTPTPDCFLDGITRQTVIELAKRRGIEVVERHIMPEELA 244 (292)
T ss_pred HHHHHHHHHHcCCCeEEEECCCCCEEEcCceEEEEEECCEEECCCCcccccchhHHHHHHHHHHcCCeEEEEecCHHHHh
Confidence 99999999999999999999999999999999999999999999987799999999999999999999999999999999
Q ss_pred hcceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHHhh
Q 046821 307 TADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEE 353 (361)
Q Consensus 307 ~adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~~ 353 (361)
+|||+|+|||++||+||.+|+++.+. +||++++|++.|.+..+.
T Consensus 245 ~adevfltnS~~gi~PV~~i~~~~~~---~g~~~~~l~~~~~~~~~~ 288 (292)
T PRK07544 245 GFSECFLTGTAAEVTPVSEIGEYRFT---PGAITRDLMDDYEALVRP 288 (292)
T ss_pred hcCceeecCccceEEEEEEEeeEEeC---CChHHHHHHHHHHHHHhc
Confidence 99999999999999999999999995 589999999999876653
No 9
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=3.3e-53 Score=403.01 Aligned_cols=245 Identities=31% Similarity=0.513 Sum_probs=216.8
Q ss_pred eEEECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHH
Q 046821 103 LAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLI 182 (361)
Q Consensus 103 ~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l~ 182 (361)
++|+||++++.+++.|++.||||+||||||||+|+++|++++|++|++||.+||+.|+++. +++.+.+.+.+.+++.
T Consensus 4 ~~~~nG~~~~~~~~~i~~~drg~~yGdGvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~L~i~~---~~~~~~l~~~i~~~~~ 80 (286)
T PRK06680 4 IAYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVRDGKLVDLDRHLARLFRSLGEIRIAP---PMTRAELVEVLRELIR 80 (286)
T ss_pred EEEECCEEEEHHHCcccccccccceeeEEEEEEEEECCEEechHHHHHHHHHHHHHcCCCC---CCCHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999994 3467889999999988
Q ss_pred Hc-----cC--------C--CCC-CC---------------C-C---CCCCCeEEEEeccccCCCCCcCcccccccHHHH
Q 046821 183 RN-----VL--------P--EWK-PP---------------V-Y---DNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNN 227 (361)
Q Consensus 183 ~~-----~~--------~--~~~-~p---------------~-~---~~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~ 227 (361)
++ .+ . .+. ++ . + ...+|+++.+++..|.. .+.+|++||+.+
T Consensus 81 ~~~~~~~~lr~~vtrG~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~~~~~~~~~~~----~~~~Ks~nyl~~ 156 (286)
T PRK06680 81 RNRVREGLVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFARPAAAAETGIKVITVPDNRWK----RCDIKSVGLLPN 156 (286)
T ss_pred HcCCCceEEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEeccccCChhHHhCCeEEEEecCCCCC----CCCcchhccHHH
Confidence 75 00 0 000 10 0 0 01457777776654432 367999999999
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEE-eCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhH
Q 046821 228 ILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLV-KKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEF 305 (361)
Q Consensus 228 i~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v-~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL 305 (361)
++++++|+++|+||+|++| +|+|+|++++|+|++ +||+|+||+.+ ++|+||||+.++++|++.|++|+|+.++++||
T Consensus 157 vla~~eA~~~g~dd~l~ld-~g~v~E~~~sN~f~~~~~~~l~TP~~~~~iL~Gitr~~il~~a~~~g~~v~e~~i~~~el 235 (286)
T PRK06680 157 VLAKQAAKEAGAQEAWMVD-DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAKELGLEVEERPFTLQEA 235 (286)
T ss_pred HHHHHHHHHCCCCEEEEec-CCEEEEcCcEEEEEEEECCEEEeCCCCCCCCcCHHHHHHHHHHHHcCCeEEEEcCCHHHH
Confidence 9999999999999999999 999999999999999 99999999975 79999999999999999999999999999999
Q ss_pred hhcceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHHhhcC
Q 046821 306 HTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESG 355 (361)
Q Consensus 306 ~~adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~~~~ 355 (361)
.+|||+|+|||++||+||.+|+++.++++++||++++|++.|++..++..
T Consensus 236 ~~ade~f~~ns~~gi~pV~~id~~~~~~~~~g~~~~~L~~~~~~~~~~~~ 285 (286)
T PRK06680 236 YAAREAFITAASSFVFPVVQIDGKQIGNGKPGPIAKRLREAYEEFARLTA 285 (286)
T ss_pred hcCcEEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999888889999999999998887654
No 10
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=7.3e-53 Score=398.72 Aligned_cols=239 Identities=35% Similarity=0.523 Sum_probs=209.5
Q ss_pred EEECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHH
Q 046821 104 AWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIR 183 (361)
Q Consensus 104 ~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l~~ 183 (361)
+|+||++++.+++.+++.||||+||||||||||+++|++++|++|++||.+||+.|+++. +++.+.+.+.+.+++.+
T Consensus 2 ~~~nG~~~~~~~~~i~~~drgl~yGdgvFEtir~~~g~~~~l~~H~~RL~~Sa~~l~i~~---~~~~~~l~~~i~~~~~~ 78 (276)
T TIGR01121 2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVYNGKLFTVNEHIDRLYASAAKIRIDI---PYTKEELHQLLHELVEK 78 (276)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEECCEEeChHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999999999999999999999999994 35678899999998887
Q ss_pred ccC-------------C--CCCCC--------------C-C---CCCCCeEEEEeccccCCCCCcCcccccccHHHHHHH
Q 046821 184 NVL-------------P--EWKPP--------------V-Y---DNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILA 230 (361)
Q Consensus 184 ~~~-------------~--~~~~p--------------~-~---~~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i~a 230 (361)
+-. . ...+| . . ....|+++..+...|.. .+.+|+.||+.++++
T Consensus 79 ~~~~~~~irl~~~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~----~~~~K~~nyl~~vla 154 (276)
T TIGR01121 79 NNLNTGHVYFQVTRGVAPRNHQFPAGTVKPVITAYTKEVPRPEENLEKGVKAITVEDIRWL----RCDIKSLNLLGNVLA 154 (276)
T ss_pred cCCCceEEEEEEEcCCCCcCCCCCCCCCCcEEEEEEecccCChhHHhcCeEEEEecCCCcc----CCCcchhhhHHHHHH
Confidence 500 0 00000 0 0 01356666555444422 367999999999999
Q ss_pred HHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhhcc
Q 046821 231 KIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTAD 309 (361)
Q Consensus 231 ~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~ad 309 (361)
+++|++.|+||+|++| +|+|+||+++|||+++||+|+||+.+ ++|+||||+.|+++|+++|++|+|+.++++||.+||
T Consensus 155 ~~eA~~~g~de~l~~~-~g~v~E~~~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ad 233 (276)
T TIGR01121 155 KQEAHEKGAYEAILHR-GGTVTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNAD 233 (276)
T ss_pred HHHHHHcCCCEEEEec-CCeEEecCceeEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHCCCeEEEEeCCHHHHhcCC
Confidence 9999999999999996 89999999999999999999999985 799999999999999999999999999999999999
Q ss_pred eeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHH
Q 046821 310 EVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKE 350 (361)
Q Consensus 310 evfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~ 350 (361)
|+|+|||++||+||.+|+++.++++++||++++|+++|++.
T Consensus 234 e~fltns~~gi~PV~~id~~~~~~~~~g~~~~~L~~~~~~~ 274 (276)
T TIGR01121 234 EVFVSSTTAEITPVIEIDGQQIGDGKPGPWTRQLQKAFEEK 274 (276)
T ss_pred EEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999998888899999999999764
No 11
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=8.7e-53 Score=399.58 Aligned_cols=246 Identities=32% Similarity=0.455 Sum_probs=210.6
Q ss_pred eEEECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHH
Q 046821 103 LAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLI 182 (361)
Q Consensus 103 ~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l~ 182 (361)
++|+||++++.+++.++++||||+||||+|||||+++|++++|++|++||++||+.|+++. +++.+.+++.+.+++.
T Consensus 1 ~~~~nG~~~~~~~~~v~~~drg~~~GdgvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~l~~~~---~~~~~~l~~~l~~~~~ 77 (283)
T PRK07650 1 LIYVNGQYVEEEEARISPFDHGYLYGLGVFETFRIYNGHPFLLDDHYDRLNDALDTLQIEW---TMTKDEVLLILKNLLE 77 (283)
T ss_pred CEEECCEEeEHHHCeecccccccccccEEEEEEEEECCEEEcHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999994 3467888888888886
Q ss_pred Hcc---------C-C-----CCCCC-------------CCC--CCCCeEEEEeccccCCCCCcCcccccccHHHHHHHHH
Q 046821 183 RNV---------L-P-----EWKPP-------------VYD--NTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKI 232 (361)
Q Consensus 183 ~~~---------~-~-----~~~~p-------------~~~--~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i~a~~ 232 (361)
++- + . .+.++ ... .......+.+...|..++. .+++|++||+.++++++
T Consensus 78 ~~~~~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Kt~~y~~~v~a~~ 156 (283)
T PRK07650 78 KNGLENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGVVLKQRRNTPEG-AFRLKSHHYLNNILGKR 156 (283)
T ss_pred hcCCCcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCCCChhhcCeEEEEEEEecCCCC-CcchhHHhHHHHHHHHH
Confidence 640 0 0 01110 000 0111112233344544443 48899999999999999
Q ss_pred HHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhhccee
Q 046821 233 EGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTADEV 311 (361)
Q Consensus 233 ~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~adev 311 (361)
+|+++|+||+||+|++|+|+||+++|||++++|+|+||+.+ |+|+||||+.++++|++.|++|+|+.++++||..||||
T Consensus 157 ~a~~~g~de~llln~~G~v~E~s~sNif~v~~g~l~TP~l~~g~L~GitR~~li~~~~~~g~~v~e~~i~~~dL~~adei 236 (283)
T PRK07650 157 EIGNDPNKEGIFLTEEGYVAEGIVSNLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEV 236 (283)
T ss_pred HHHHcCCCeEEEECCCCeEEEcCceEEEEEECCEEEcCCCcCCCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEe
Confidence 99999999999999999999999999999999999999986 79999999999999999999999999999999999999
Q ss_pred eeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHHhh
Q 046821 312 WTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEE 353 (361)
Q Consensus 312 fltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~~ 353 (361)
|+|||++||+||.+|+++.++ +++||++++|+++|.+...+
T Consensus 237 fl~ns~~gv~pV~~i~~~~~~-g~~g~~~~~l~~~~~~~~~~ 277 (283)
T PRK07650 237 FVTNSIQEIVPLTRIEERDFP-GKVGMVTKRLQNLYEMQREK 277 (283)
T ss_pred eeecCcccEEEEEEECCEEeC-CCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999995 67899999999999876655
No 12
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=5.8e-53 Score=398.05 Aligned_cols=236 Identities=47% Similarity=0.678 Sum_probs=209.6
Q ss_pred EECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHc
Q 046821 105 WVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRN 184 (361)
Q Consensus 105 ~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l~~~ 184 (361)
|+||++++.+++.|++.||||+||||+|||||+++|++++|++|++||.+||+.|+++. +++.+.+++.+.+++..+
T Consensus 1 ~~nG~~~~~~~~~i~~~d~g~~~G~gvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~l~~~~---~~~~~~l~~~i~~~~~~~ 77 (270)
T cd01558 1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVYNGKPFALDEHLDRLYRSAKELRIDI---PYTREELKELIRELVAKN 77 (270)
T ss_pred CcCCeEeEHHHCccccccchhcccceEEEEEEEECCEEecHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHHc
Confidence 78999999999999999999999999999999999999999999999999999999984 346778888898888774
Q ss_pred c---------C--C----CCCC---------------CC---CCCCCCeEEEEeccccCCCCCcCcccccccHHHHHHHH
Q 046821 185 V---------L--P----EWKP---------------PV---YDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAK 231 (361)
Q Consensus 185 ~---------~--~----~~~~---------------p~---~~~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i~a~ 231 (361)
- + . .+.+ +. .....|+++.+++.+|. ..+++|++||+.+++++
T Consensus 78 ~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~~~~~~----~~~~~K~~ny~~~~~a~ 153 (270)
T cd01558 78 EGGEGDVYIQVTRGVGPRGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRVITVPDIRW----LRCDIKSLNLLNNVLAK 153 (270)
T ss_pred CCCCceEEEEEEeCCCccCCCCCCCCCCEEEEEEEecCCCChhhhhcCeEEEEeccccc----CCCCchhhccHHHHHHH
Confidence 0 0 0 0000 00 01246888888877664 23689999999999999
Q ss_pred HHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhhcce
Q 046821 232 IEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTADE 310 (361)
Q Consensus 232 ~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~ade 310 (361)
++|+++|+||+|++|++|+|+|++++|||+++||+|+||+.+ ++|+||||+.|+++|++.|++|+|+.++++||.+|||
T Consensus 154 ~~a~~~g~de~l~ld~~g~v~E~~~sNif~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~ade 233 (270)
T cd01558 154 QEAKEAGADEAILLDADGLVTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADE 233 (270)
T ss_pred HHHHHcCCCEEEEEcCCCEEEEcCcEEEEEEECCEEECCCCcCCCCCChHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCE
Confidence 999999999999999999999999999999999999999985 7999999999999999999999999999999999999
Q ss_pred eeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHH
Q 046821 311 VWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVY 347 (361)
Q Consensus 311 vfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~ 347 (361)
+|+|||++||+||.+|+++.+++++.||++++|++.|
T Consensus 234 ~fl~ns~~gv~PV~~i~~~~~~~~~~~~~~~~l~~~~ 270 (270)
T cd01558 234 VFLTSTTAEVMPVVEIDGRPIGDGKPGPVTKRLREAY 270 (270)
T ss_pred EEEecCcccEEEEEEECCeECCCCCCCHHHHHHHHhC
Confidence 9999999999999999999998888899999998764
No 13
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=2e-51 Score=391.68 Aligned_cols=243 Identities=22% Similarity=0.292 Sum_probs=211.1
Q ss_pred ceEEECC-----eeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHH
Q 046821 102 LLAWVGD-----EIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQA 176 (361)
Q Consensus 102 ~~~~~ng-----~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~ 176 (361)
.++|+|| +|++.+++.|+++||||+|||||||||++++|++++|++|++||.+||+.|+++. ++.+.+.+.
T Consensus 7 ~~~~~ng~~~~~~~~~~~~a~i~~~drg~~~GdgvFEt~rv~~g~i~~l~~Hl~RL~~Sa~~l~i~~----~~~~~l~~~ 82 (292)
T PRK07849 7 VVVTLDPYGGSERVHDPSAPLLHADDLAAVRGDGVFETLLVRDGRPCNLEAHLERLARSAALLDLPE----PDLDRWRRA 82 (292)
T ss_pred EEEEECCCCccceEechHHCCccchhcchhccceEEEEEEEECCEECCHHHHHHHHHHHHHhcCCCC----CCHHHHHHH
Confidence 4799999 9999999999999999999999999999999999999999999999999999994 256778888
Q ss_pred HHHHHHHcc-----------C-CC----CCC---------C---CCCCCCCeEEEEeccccCC-----CCCcCccccccc
Q 046821 177 IFRTLIRNV-----------L-PE----WKP---------P---VYDNTHGVNLVTATTRRNS-----PNNLDSKIHHNN 223 (361)
Q Consensus 177 i~~~l~~~~-----------~-~~----~~~---------p---~~~~~~gi~l~~~~~~r~~-----~~~~~~~~Kt~n 223 (361)
+.+++.++. + .. ..+ + ......|+++++++..+.. .....+++||+|
T Consensus 83 i~~~v~~~~~~~~~~~iRl~v~~g~~~~~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~p~~~~~~Kt~n 162 (292)
T PRK07849 83 VELAIEEWRAPEDEAALRLVYSRGRESGGAPTAWVTVSPVPERVARARREGVSVITLDRGYPSDAAERAPWLLAGAKTLS 162 (292)
T ss_pred HHHHHHHhcCCCCCeEEEEEEeCCCCCCCCCeEEEEEeecCccchhhccCCeEEEEEeccccCcccccCcccccccchhh
Confidence 888876530 0 00 000 0 0112468888887654321 111346899999
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCH
Q 046821 224 LLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISL 302 (361)
Q Consensus 224 ~l~~i~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~ 302 (361)
|+.++++.++|+++|+||+|++|++|+|+||+++|||+++||+|+||+.+ |+|+||||+.|+++|++.|++|+|+.+++
T Consensus 163 y~~~i~a~~~A~~~g~dd~L~ld~~G~v~E~s~~Nif~~~~g~l~TP~~~~giL~GItR~~vie~~~~~g~~v~er~i~~ 242 (292)
T PRK07849 163 YAVNMAALRYAARRGADDVIFTSTDGYVLEGPTSTVVIATDDRLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRP 242 (292)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEcCCCcEEECCceEEEEEECCEEECCCCcCCCCccHHHHHHHHHHHHcCCceEEEECCH
Confidence 99999999999999999999999999999999999999999999999986 79999999999999999999999999999
Q ss_pred HhHhhcceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHH
Q 046821 303 SEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKET 351 (361)
Q Consensus 303 ~dL~~adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~ 351 (361)
+||.+|||+|+|||++||+||.+|+++.++. ||++++|++.|+..+
T Consensus 243 ~eL~~Adevfltns~~gi~pV~~id~~~~~~---~~~~~~l~~~~~~~~ 288 (292)
T PRK07849 243 ADLFAADGVWLVSSVRLAARVHTLDGRPLPR---DPLADELTELVDAAI 288 (292)
T ss_pred HHHhhCCEEEEecCcceEEEEEEECCEECCC---ChHHHHHHHHHHHHh
Confidence 9999999999999999999999999999964 699999999997643
No 14
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=1.6e-50 Score=381.11 Aligned_cols=234 Identities=28% Similarity=0.416 Sum_probs=201.0
Q ss_pred eEEECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHH
Q 046821 103 LAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLI 182 (361)
Q Consensus 103 ~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l~ 182 (361)
++|+||++ .+.|+++||||+||||||||+++++|++++|++|++||.+||+.|+++.| ..+.+.+.+.+++.
T Consensus 1 ~~~~nG~~----~~~i~~~d~g~~~GdgvFEtir~~~g~~~~l~~Hl~RL~~Sa~~l~~~~~----~~~~~~~~l~~~~~ 72 (268)
T PRK06092 1 MFWINGQP----QESLSVSDRSTQYGDGCFTTARVRDGQVSLLSRHLQRLQDACERLAIPLD----DWAQLEQEMKQLAA 72 (268)
T ss_pred CEEECCcC----cCccCccccccccccceeeEEEEECCeeccHHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHh
Confidence 47999996 67899999999999999999999999999999999999999999999942 44566666666553
Q ss_pred Hc--------cCC-----CCCC-------------C--CCC---CCCCeEEEEeccccCCCCCcCcccccccHHHHHHHH
Q 046821 183 RN--------VLP-----EWKP-------------P--VYD---NTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAK 231 (361)
Q Consensus 183 ~~--------~~~-----~~~~-------------p--~~~---~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i~a~ 231 (361)
.. +.. .+.+ | .+. ..+|+++.+++.++. +++..+++||.||+.+++++
T Consensus 73 ~~~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~~~~~~-~~~~~~~~Kt~ny~~~~~a~ 151 (268)
T PRK06092 73 ELENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALCPTRLG-RNPLLAGIKHLNRLEQVLIR 151 (268)
T ss_pred hCCCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEeccccC-CCCCccCcchhhhHHHHHHH
Confidence 21 000 0000 0 011 247888888887654 34456789999999999999
Q ss_pred HHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhhcce
Q 046821 232 IEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTADE 310 (361)
Q Consensus 232 ~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~ade 310 (361)
++|+++|+||+|++|++|+|+||+++|||+++||+|+||+.+ ++||||||+.++++|++.|++|+|+.++++||.+|||
T Consensus 152 ~~A~~~g~de~l~l~~~g~v~E~s~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~ade 231 (268)
T PRK06092 152 AELEQTEADEALVLDSEGWVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQSGYPVVEVDASLEELLQADE 231 (268)
T ss_pred HHHHhcCCCEEEEECCCCCEEEccceEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCE
Confidence 999999999999999999999999999999999999999986 7899999999999999999999999999999999999
Q ss_pred eeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHH
Q 046821 311 VWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYK 348 (361)
Q Consensus 311 vfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~ 348 (361)
+|+|||++||+||.+||++.++ .||++++|++.|.
T Consensus 232 vfltns~~gi~pV~~id~~~~~---~g~~~~~l~~~~~ 266 (268)
T PRK06092 232 VFICNSLMPVWPVRAIGETSYS---SGTLTRYLQPLCE 266 (268)
T ss_pred EEEeCCcceEEEEEEECCEEcc---chHHHHHHHHHHh
Confidence 9999999999999999999995 4799999998875
No 15
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=5.5e-50 Score=391.10 Aligned_cols=244 Identities=25% Similarity=0.437 Sum_probs=211.3
Q ss_pred EECCeeecCCCCccCcCCcccccCceEEEEEEEE---CC--eecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHH
Q 046821 105 WVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVY---NG--KVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFR 179 (361)
Q Consensus 105 ~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~---~G--~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~ 179 (361)
|+||++++.+++.|++.||||+||||||||+|++ +| ++++|++|++||.+||+.|+++ .++.+.|++.+.+
T Consensus 42 ~~nG~~vp~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~L~i~----~~~~~~l~~~i~~ 117 (356)
T PRK13357 42 WHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMP----ELPEELFLEAVKQ 117 (356)
T ss_pred ccCCeEeeCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCCC----CCCHHHHHHHHHH
Confidence 9999999999999999999999999999999998 45 4788899999999999999998 2467889999998
Q ss_pred HHHHcc--C------CC---------------CCC-------------CCC-C-CCCCeEEEEe-ccccCCCCCcCcccc
Q 046821 180 TLIRNV--L------PE---------------WKP-------------PVY-D-NTHGVNLVTA-TTRRNSPNNLDSKIH 220 (361)
Q Consensus 180 ~l~~~~--~------~~---------------~~~-------------p~~-~-~~~gi~l~~~-~~~r~~~~~~~~~~K 220 (361)
++.+|- + .. +.+ +.+ . ..+|+++..+ ...|..+..+ +++|
T Consensus 118 li~~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~v~l~~~~~~~r~~~~~l-~~~K 196 (356)
T PRK13357 118 LVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGT-GAAK 196 (356)
T ss_pred HHHhcccccCCCCCCccEEEEEEEEccCCcccccCCCccEEEEEEEechhhcccCCCceEEEEcCCeEecCCCCc-chhh
Confidence 887641 0 00 000 000 0 0146777666 5667665544 7899
Q ss_pred c-ccHHHHHHHHHHHHhCCCCeEEEEcC--CCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEE
Q 046821 221 H-NNLLNNILAKIEGNNANAGDAIMLDK--DGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLE 296 (361)
Q Consensus 221 t-~n~l~~i~a~~~A~~~g~de~Llln~--~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~ 296 (361)
+ +||+.+++++++|+++|+||+|++|. +|+|+|++++|||++++++++||+.+ +||+||||+.||++|+++|++|+
T Consensus 197 t~~nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNlF~v~~~~l~TPpl~~giL~GItR~~vlela~~~Gi~v~ 276 (356)
T PRK13357 197 VGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGSILPGITRDSLLQLAEDLGLTVE 276 (356)
T ss_pred cccccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEEEEEECCEEEECCCCCCCCcchHHHHHHHHHHHCCCeEE
Confidence 9 79999999999999999999999994 89999999999999999999999986 79999999999999999999999
Q ss_pred EEecCHHh------HhhcceeeeecCcCceEEEeEEC----CEEcCCCCCcHHHHHHHHHHHHHHhh
Q 046821 297 ERRISLSE------FHTADEVWTTGTMGEITPVVKID----GRIVGDGKVGPVTQRIQKVYKKETEE 353 (361)
Q Consensus 297 e~~i~~~d------L~~adevfltnS~~gv~pV~~i~----~~~~~~~~~g~~~~~l~~~~~~~~~~ 353 (361)
|+.++++| |.+|||+|+|||+.||+||.+|+ ++.++++++||++++|++.|++..++
T Consensus 277 e~~i~~~el~~~~~L~~AdevFltnS~~gi~PV~~id~~~~~~~~~~g~~g~~t~~L~~~~~~~~~~ 343 (356)
T PRK13357 277 ERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKDKEFVIGDGEVGPVTQKLYDELTGIQFG 343 (356)
T ss_pred EEecCHHHhhhhhccCcceEEEEcccccEEEEEEEEEeCCCEEEcCCCCCChHHHHHHHHHHHHhcC
Confidence 99999999 89999999999999999999998 45888788999999999999988764
No 16
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=8.1e-50 Score=374.92 Aligned_cols=228 Identities=30% Similarity=0.444 Sum_probs=199.0
Q ss_pred EECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHc
Q 046821 105 WVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRN 184 (361)
Q Consensus 105 ~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l~~~ 184 (361)
|+||++ ++.++++|+||+||||||||+|+++|++++|++|++||.+||+.|+++. ++.+++.+.+.+++..+
T Consensus 1 ~~nG~~----~~~i~~~d~g~~~G~gvFEt~r~~~G~~~~l~~Hl~RL~~Sa~~l~~~~----~~~~~l~~~~~~~~~~~ 72 (261)
T TIGR03461 1 WVNGVL----QTQISVSDRGLQYGDGCFTTAKVRNGKIELLDLHLERLQDAAARLGIPL----PDWDALREEMAQLAAGY 72 (261)
T ss_pred CcCCcc----cCccCcccccccccceeEEEEEEECCEeccHHHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHHhC
Confidence 789995 7889999999999999999999999999999999999999999999994 25778888888887753
Q ss_pred -------cC-CC-----CCC---------------CCCC---CCCCeEEEEeccccCCCCCcCcccccccHHHHHHHHHH
Q 046821 185 -------VL-PE-----WKP---------------PVYD---NTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIE 233 (361)
Q Consensus 185 -------~~-~~-----~~~---------------p~~~---~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i~a~~~ 233 (361)
.+ .. +.+ +.+. ..+|+++.+++.++.. ++..+.+|+.||+.+++++++
T Consensus 73 ~~~~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~Kt~~y~~~~~a~~~ 151 (261)
T TIGR03461 73 SLGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYSAWQQQGIRLGVSPVRLGR-NPLLAGIKHLNRLEQVLIKAE 151 (261)
T ss_pred CCeEEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccChhHhcCCEEEEEeccccCC-CCCCcCccccccHHHHHHHHH
Confidence 01 00 000 0011 1368888888776543 345678999999999999999
Q ss_pred HHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhhcceee
Q 046821 234 GNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVW 312 (361)
Q Consensus 234 A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~adevf 312 (361)
|+++|+||+|++|++|+|+|++++|||+++||+|+||+.+ ++|+||||+.|+++|++.|++|+|+.++++||.+|||+|
T Consensus 152 A~~~g~de~llln~~g~v~E~s~sNif~~~~~~l~TP~~~~~~L~GItR~~il~~~~~~g~~v~E~~i~~~eL~~ade~f 231 (261)
T TIGR03461 152 LENSEADEALVLDTDGNVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALGYEIEEVKAGLEELLSADEVF 231 (261)
T ss_pred hhhcCCCEEEEECCCCCEEEeccEEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEE
Confidence 9999999999999999999999999999999999999985 799999999999999999999999999999999999999
Q ss_pred eecCcCceEEEeEECCEEcCCCCCcHHHHHHH
Q 046821 313 TTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQ 344 (361)
Q Consensus 313 ltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~ 344 (361)
+|||++||+||.+||++.++. ||++++|+
T Consensus 232 ~~ns~~gi~pV~~id~~~~~~---~~~~~~l~ 260 (261)
T TIGR03461 232 ITNSLMGVVPVNAIGETSYPS---RTLTRLLQ 260 (261)
T ss_pred EeCCccceEEEEEECCEEecc---hHHHHHhh
Confidence 999999999999999999963 68998874
No 17
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=8.1e-50 Score=389.40 Aligned_cols=247 Identities=25% Similarity=0.383 Sum_probs=213.7
Q ss_pred ceEEECCeeecCCCCccCcCCcccccCceEEEEEEEE---CCe--ecCHHhHHHHHHHHHHHcCCccccccchHHHHHHH
Q 046821 102 LLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVY---NGK--VFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQA 176 (361)
Q Consensus 102 ~~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~ 176 (361)
..+|+||++++.+++.|++.||||+||||||||||++ +|+ +|++++|++||.+||+.|+|+. ++.+.|++.
T Consensus 43 ~~~~~ng~~v~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~l~~Hl~RL~~Sa~~L~i~~----p~~~~l~~~ 118 (355)
T PLN03117 43 GESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTP----PSLEQFVEA 118 (355)
T ss_pred CCeEECCEEEEchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeCcHHHHHHHHHHHHHhCCCC----CCHHHHHHH
Confidence 3589999999999999999999999999999999998 898 6889999999999999999994 267889999
Q ss_pred HHHHHHHccC------C-C---------------CCC-C-------------CCCCCCCeEEEEec-cccCCCCCcCccc
Q 046821 177 IFRTLIRNVL------P-E---------------WKP-P-------------VYDNTHGVNLVTAT-TRRNSPNNLDSKI 219 (361)
Q Consensus 177 i~~~l~~~~~------~-~---------------~~~-p-------------~~~~~~gi~l~~~~-~~r~~~~~~~~~~ 219 (361)
+.+++..+-. . . ..+ + .+...+|+++.+++ .+|..+. .++++
T Consensus 119 i~~lv~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~~~gi~l~~~~~~~r~~~~-~l~~~ 197 (355)
T PLN03117 119 VKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKASSGLNLKVDHKHRRAHSG-GTGGV 197 (355)
T ss_pred HHHHHHhccccccCCCCCcEEEEEEEEEecCccCcCCCCCcEEEEEEEeccccccCCCCEEEEEcCceEeCCCC-Cccch
Confidence 9998876510 0 0 000 0 00113688888765 5665543 45899
Q ss_pred ccc-cHHHHHHHHHHHHhCCCCeEEEEcCC--CcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcE
Q 046821 220 HHN-NLLNNILAKIEGNNANAGDAIMLDKD--GYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVL 295 (361)
Q Consensus 220 Kt~-n~l~~i~a~~~A~~~g~de~Llln~~--G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v 295 (361)
|++ ||+.+++++++|+++|+||+|++|.+ |+|+|++++|||+++|++|+||+++ +||+||||+.||++|+++|++|
T Consensus 198 K~~~nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v~~~~l~TP~l~~~iL~GItR~~vl~la~~~Gi~v 277 (355)
T PLN03117 198 KSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTSGTILPGVTRKSISELARDIGYQV 277 (355)
T ss_pred hhhhhhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCcCCCCCCHHHHHHHHHHHHCCCEE
Confidence 996 99999999999999999999999974 6999999999999999999999975 7999999999999999999999
Q ss_pred EEEecCHHhHhhcceeeeecCcCceEEEeEECCE----EcCCCCCcHHHHHHHHHHHHHHhhc
Q 046821 296 EERRISLSEFHTADEVWTTGTMGEITPVVKIDGR----IVGDGKVGPVTQRIQKVYKKETEES 354 (361)
Q Consensus 296 ~e~~i~~~dL~~adevfltnS~~gv~pV~~i~~~----~~~~~~~g~~~~~l~~~~~~~~~~~ 354 (361)
+|+.++++||.+|||+|+|||+.+|+||.+|+.. .++++. +|+|++|+++|.+++++.
T Consensus 278 ~Er~i~~~eL~~AdEvFltnT~~~I~PV~~i~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~g~ 339 (355)
T PLN03117 278 EERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKKVKYRTGE-EALSTKLHLILTNIQMGV 339 (355)
T ss_pred EEEEccHHHHhhCCEEEEccCcceEEEEEEEEecCceEEeCCCC-ChHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999854 677665 899999999999998754
No 18
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=8.2e-50 Score=384.29 Aligned_cols=244 Identities=24% Similarity=0.403 Sum_probs=207.3
Q ss_pred EECCeeecCCCCccCcCCcccccCceEEEEEEEE---CCe--ecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHH
Q 046821 105 WVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVY---NGK--VFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFR 179 (361)
Q Consensus 105 ~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~ 179 (361)
|+||+|++.+++.|++.||||+||||||||||++ +|+ +++|++|++||.+||++|+++. ++.+.+.+.+.+
T Consensus 1 ~~nG~~~~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~----~~~~~l~~~l~~ 76 (313)
T TIGR01123 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPE----LPDELFLEALRQ 76 (313)
T ss_pred CCCCEEEECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCC----CCHHHHHHHHHH
Confidence 7899999999999999999999999999999998 898 6788999999999999999982 467889999988
Q ss_pred HHHHcc-------------CC----------CCCC-CC---------CC--CCC---CeEEEE-eccccCCCCCcCcccc
Q 046821 180 TLIRNV-------------LP----------EWKP-PV---------YD--NTH---GVNLVT-ATTRRNSPNNLDSKIH 220 (361)
Q Consensus 180 ~l~~~~-------------~~----------~~~~-p~---------~~--~~~---gi~l~~-~~~~r~~~~~~~~~~K 220 (361)
++.++- +. -+.+ +. .. ... ++++.. ....|..+. .++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~l~~~K 155 (313)
T TIGR01123 77 LVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPG-GTGAVK 155 (313)
T ss_pred HHHHccccCCCCCCCCcEEEEeEEEecCCccccCCCCccEEEEEEEEchhhccccccceeEEecccceecCCC-CCccce
Confidence 887641 00 0000 00 00 112 334433 344555444 247899
Q ss_pred c-ccHHHHHHHHHHHHhCCCCeEEEEcCCCc--EEecCceeEEEEeC-CeEEcCCCC-CCCCchHHHHHHHHHHhCCCcE
Q 046821 221 H-NNLLNNILAKIEGNNANAGDAIMLDKDGY--VSETNATNIFLVKK-GRVLTPHAD-YCLPGITRATVMELVVKENLVL 295 (361)
Q Consensus 221 t-~n~l~~i~a~~~A~~~g~de~Llln~~G~--V~E~s~sNlf~v~~-g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v 295 (361)
| +||+.+++++++|+++|+||+||+|++|+ |+|++++|||++++ |+|+||+.+ ++|+||||+.||++|+++|++|
T Consensus 156 ~~~nyl~~vla~~eA~~~g~deal~ld~~g~g~v~E~~~sNlf~v~~~g~l~Tp~l~~~~L~GItR~~vi~l~~~~Gi~v 235 (313)
T TIGR01123 156 VGGNYAASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEV 235 (313)
T ss_pred eccccHHHHHHHHHHHHCCCCEEEEEeCCCCeEEEEcCcEeEEEEEcCCEEEeCCCCCCCCcchHHHHHHHHHHHcCCeE
Confidence 9 69999999999999999999999999987 99999999999985 799999986 7999999999999999999999
Q ss_pred EEEecCHHhHhhc----ceeeeecCcCceEEEeEE--CCEE--cCCCCCcHHHHHHHHHHHHHHhh
Q 046821 296 EERRISLSEFHTA----DEVWTTGTMGEITPVVKI--DGRI--VGDGKVGPVTQRIQKVYKKETEE 353 (361)
Q Consensus 296 ~e~~i~~~dL~~a----devfltnS~~gv~pV~~i--~~~~--~~~~~~g~~~~~l~~~~~~~~~~ 353 (361)
+|+.++++||.+| ||+|+|||+.||+||.+| |++. ++++++||++++|++.|++..++
T Consensus 236 ~e~~i~~~~l~~A~~~~devfltnS~~gi~PV~~i~~d~~~~~~~~g~~g~~~~~l~~~~~~~~~~ 301 (313)
T TIGR01123 236 EERRIDIDELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDELTDIQYG 301 (313)
T ss_pred EEEecCHHHHHHHHhcCCEEEEccCceEEEEEEEEEECCeEEEcCCCCCChHHHHHHHHHHHHhcC
Confidence 9999999999999 999999999999999999 7875 77778899999999999998774
No 19
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=8.2e-50 Score=375.99 Aligned_cols=232 Identities=20% Similarity=0.267 Sum_probs=200.9
Q ss_pred ceEEECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHH
Q 046821 102 LLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTL 181 (361)
Q Consensus 102 ~~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l 181 (361)
.++|+||++++.+++. +|++||||||||||+++|++++|++|++||.+||+.|++. +++.+.+.+.+.+++
T Consensus 3 ~~~~~nG~~~~~~~a~-----~~~~~GdgvFETir~~~g~~~~l~~Hl~RL~~sa~~l~~~----~~~~~~l~~~l~~~~ 73 (266)
T PRK09266 3 PLIELNGRPATAEDLA-----ALALANYGHFTSMQVRDGRVRGLDLHLQRLRRASRELFGA----ALDDDRVRAQLRAAL 73 (266)
T ss_pred cEEEECCEECCHHHhh-----hHhhccceEEEEEEEECCEEcCHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHH
Confidence 3589999999998876 4999999999999999999999999999999999998654 246778888888887
Q ss_pred HHc---------cC-CC----CCC------------C-CCCCCCCeEEEEeccccCCCCCcCcccccccHHHHHHHHHHH
Q 046821 182 IRN---------VL-PE----WKP------------P-VYDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEG 234 (361)
Q Consensus 182 ~~~---------~~-~~----~~~------------p-~~~~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i~a~~~A 234 (361)
..+ +. .. ..+ | .....+|+++.+++..|. .+.+||.||+.+++++++|
T Consensus 74 ~~~~~~~~ir~~v~r~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~v~l~~~~~~r~-----~~~~K~~~~l~~vla~~~a 148 (266)
T PRK09266 74 AAGPADASVRVTVFAPDFDFRNPLADVAPDVLVATSPPADGPAGPLRLQSVPYERE-----LPHIKHVGTFGQLHLRRLA 148 (266)
T ss_pred hcCCCcEEEEEEEEecCcccCCCCCCCCceEEEEEecCCcCCCCCeEEEEEEeccc-----CCCCCCCCcHHHHHHHHHH
Confidence 432 00 00 100 0 001247888888877663 2579999999999999999
Q ss_pred HhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCCCCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhhcceeeee
Q 046821 235 NNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTT 314 (361)
Q Consensus 235 ~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~adevflt 314 (361)
+++|+||+|++|++|+|+||+++|||+++||+|+||+. ++||||||+.|++.+++.|++|+|+.++++||.+|||+|+|
T Consensus 149 ~~~g~de~l~ln~~g~v~E~~~sNlf~v~~~~l~TP~~-~~L~GItR~~ll~~~~~~g~~v~e~~i~~~eL~~adevflt 227 (266)
T PRK09266 149 QRAGFDDALFVDPDGRVSEGATWNLGFWDGGAVVWPQA-PALPGVTMALLQRGLERLGIPQRTRPVTLADLGRFAGAFAC 227 (266)
T ss_pred HHcCCCeEEEEcCCCcEEEcCceEEEEEECCEEECCCC-CccchHHHHHHHHHHHHcCCeeEEEECCHHHHHHhhHhhhh
Confidence 99999999999999999999999999999999999986 79999999999999999999999999999999999999999
Q ss_pred cCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHH
Q 046821 315 GTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKE 350 (361)
Q Consensus 315 nS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~ 350 (361)
||++||+||.+||++.++.+ +|++++|++.|++.
T Consensus 228 nSl~gi~pV~~i~~~~~~~~--~~~~~~l~~~~~~~ 261 (266)
T PRK09266 228 NAWRGQRAVSAIDDVALPDS--HALLELLRRAYEAE 261 (266)
T ss_pred cCccceEEEEEECCEECCCC--chHHHHHHHHHHhc
Confidence 99999999999999999753 79999999999764
No 20
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=1.3e-49 Score=376.97 Aligned_cols=231 Identities=32% Similarity=0.500 Sum_probs=203.6
Q ss_pred ccCcCCcccccCceEEEEEEEEC-----CeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHcc------
Q 046821 117 KVSVFDSIVQGGDGVWEGLRVYN-----GKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNV------ 185 (361)
Q Consensus 117 ~i~~~d~~l~~G~gvFET~rv~~-----G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l~~~~------ 185 (361)
+|++.||||+||||||||+|+++ |++++|++|++||.+||+.|+++ | ++.+++.+.+.+++..|-
T Consensus 1 ~i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~-~---~~~~~l~~~i~~~i~~~~~~~~~~ 76 (279)
T cd01557 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLP-P---FSVEEFIDAIKELVKLDADWVPYG 76 (279)
T ss_pred CcCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCC-C---CCHHHHHHHHHHHHHhccccCCCC
Confidence 47899999999999999999999 89999999999999999999998 3 467889999999887640
Q ss_pred ------C--------C--CCCCC-------------CCC--CCCCeEEEEeccccCCCCCcCccccc-ccHHHHHHHHHH
Q 046821 186 ------L--------P--EWKPP-------------VYD--NTHGVNLVTATTRRNSPNNLDSKIHH-NNLLNNILAKIE 233 (361)
Q Consensus 186 ------~--------~--~~~~p-------------~~~--~~~gi~l~~~~~~r~~~~~~~~~~Kt-~n~l~~i~a~~~ 233 (361)
+ . .+.++ .+. ...|+++.+++.+|..+ .....+|+ +||+.+++++++
T Consensus 77 ~~~~~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~gv~l~~~~~~r~~~-~~~~~~K~~~nyl~~vla~~e 155 (279)
T cd01557 77 GGASLYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEKGVSALVSSFRRAAP-GGPGAAKAGGNYAASLLAQKE 155 (279)
T ss_pred CCCCEEEEEEEEeccccCCcCCCCccEEEEEEEEccccccCCCCCeEEEEeeEEcCCC-CCCcccchhhccHHHHHHHHH
Confidence 0 0 01110 010 13689999888888766 44467895 799999999999
Q ss_pred HHhCCCCeEEEEcCC-CcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhhccee
Q 046821 234 GNNANAGDAIMLDKD-GYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTADEV 311 (361)
Q Consensus 234 A~~~g~de~Llln~~-G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~adev 311 (361)
|+++|+||+||+|++ |+|+|++++|||++++|+|+||+.+ ++|+||||+.|+++|+++|++|+|+.++++||.+|||+
T Consensus 156 A~~~g~de~l~ld~~~g~v~E~~~sNlf~v~~~~l~TP~~~~~~L~Gitr~~v~~~~~~~Gi~v~e~~i~~~~l~~ade~ 235 (279)
T cd01557 156 AAEKGYDQALWLDGAHGYVAEVGTMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEV 235 (279)
T ss_pred HHHCCCCEEEEEcCCCCEEEEeCcEEEEEEECCEEEcCCCcCCCCCchHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEE
Confidence 999999999999999 9999999999999999999999987 79999999999999999999999999999999999999
Q ss_pred eeecCcCceEEEeEECCEEc--CCCCCcHHHHHHHHHHHHHHh
Q 046821 312 WTTGTMGEITPVVKIDGRIV--GDGKVGPVTQRIQKVYKKETE 352 (361)
Q Consensus 312 fltnS~~gv~pV~~i~~~~~--~~~~~g~~~~~l~~~~~~~~~ 352 (361)
|+|||+.||+||.+|+++.+ +++++||++++|++.|++.++
T Consensus 236 f~~ns~~gi~pV~~i~~~~~~~~~~~~gp~~~~l~~~~~~~~~ 278 (279)
T cd01557 236 FATGTAAVVTPVGEIDYRGKEPGEGEVGPVTKKLYDLLTDIQY 278 (279)
T ss_pred EEecceeEEEEEEEEccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998 777889999999999988765
No 21
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=2.8e-49 Score=369.77 Aligned_cols=223 Identities=41% Similarity=0.655 Sum_probs=197.2
Q ss_pred CcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHc----------cCC----
Q 046821 122 DSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRN----------VLP---- 187 (361)
Q Consensus 122 d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l~~~----------~~~---- 187 (361)
||||+|||||||||++++|++++|++|++||.+||+.|+++. +++.+.+.+.+.+++..+ +..
T Consensus 1 drg~~~GdgvFEt~r~~~g~~~~l~~Hl~RL~~sa~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~ir~~v~~g~~~ 77 (256)
T cd00449 1 DRGLHYGDGVFEGLRAGKGRLFRLDEHLDRLNRSAKRLGLPI---PYDREELREALKELVAANNGASLYIRPLLTRGVGG 77 (256)
T ss_pred CceeeccceEEEEEEEcCcEEEChHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHhCCCCCEEEEEEEEecccc
Confidence 799999999999999999999999999999999999999994 346788998998888764 000
Q ss_pred -CCCC---------------CC--CCCCCCeEEEEeccccCCCCCcCcccccccHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 046821 188 -EWKP---------------PV--YDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDG 249 (361)
Q Consensus 188 -~~~~---------------p~--~~~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i~a~~~A~~~g~de~Llln~~G 249 (361)
.+.+ +. .....|+++.+++..|..++...+++||+||+.+++++++|++.|+||+|++|++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~Kt~~~~~~~~a~~~a~~~g~de~llld~~g 157 (256)
T cd00449 78 LGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPDRRRAAPGGTGDAKTGGNLNSVLAKQEAAEAGADEALLLDDNG 157 (256)
T ss_pred cCCCCCCCCCcEEEEEEeeccccccccCCCeEEEEeeeEEeCCCCCCccchhhCCHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 0110 01 01357899998888775444556899999999999999999999999999999999
Q ss_pred cEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhhcceeeeecCcCceEEEeEECC
Q 046821 250 YVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDG 328 (361)
Q Consensus 250 ~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltnS~~gv~pV~~i~~ 328 (361)
+|+||+++|||++++|+|+||+.+ |+|+||||+.||+.|+++|++|+|+.++++||.+|||+|+|||++||+||.+|++
T Consensus 158 ~v~E~s~sNlf~~~~~~l~TP~~~~g~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~ 237 (256)
T cd00449 158 YVTEGSASNVFIVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDG 237 (256)
T ss_pred cEEEcCceEEEEEECCEEEeCCCCCCcCcchhHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECC
Confidence 999999999999999999999986 6999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcHHHHHHHHHH
Q 046821 329 RIVGDGKVGPVTQRIQKVY 347 (361)
Q Consensus 329 ~~~~~~~~g~~~~~l~~~~ 347 (361)
+.++.+++||++++|+++|
T Consensus 238 ~~~~~~~~~~~~~~l~~~~ 256 (256)
T cd00449 238 RGIGDGKPGPVTRKLRELL 256 (256)
T ss_pred eecCCCCCCHHHHHHHHhC
Confidence 9998778899999998764
No 22
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=1.2e-48 Score=385.19 Aligned_cols=246 Identities=27% Similarity=0.444 Sum_probs=214.1
Q ss_pred EEECCeeecCCCCccCcCCcccccCceEEEEEEEE---CCe--ecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHH
Q 046821 104 AWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVY---NGK--VFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIF 178 (361)
Q Consensus 104 ~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~ 178 (361)
.|.||++++.+++.|++.|++|+|||||||||+++ +|+ +|++++|++||.+||++|+|+. ++.+++.+++.
T Consensus 95 ~w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~d~H~~RL~~SA~rL~lp~----~~~e~l~~~i~ 170 (403)
T PLN02782 95 EFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAIRMRNGAERMCMPA----PTVEQFVEAVK 170 (403)
T ss_pred cEeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCcCC----CCHHHHHHHHH
Confidence 59999999999999999999999999999999998 565 6889999999999999999993 36788999999
Q ss_pred HHHHHccC-----------------CC-----CCCC-------------CCCC--CCCeEEEEe-ccccCCCCCcCcccc
Q 046821 179 RTLIRNVL-----------------PE-----WKPP-------------VYDN--THGVNLVTA-TTRRNSPNNLDSKIH 220 (361)
Q Consensus 179 ~~l~~~~~-----------------~~-----~~~p-------------~~~~--~~gi~l~~~-~~~r~~~~~~~~~~K 220 (361)
+++..|-. .. +.++ .|.. .+++++.++ ++.|..|..+ +++|
T Consensus 171 ~lv~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~~~~~~i~~~p~~~~~~~g~~~v~l~v~~~~~Ra~p~g~-g~~K 249 (403)
T PLN02782 171 ETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGT-GGVK 249 (403)
T ss_pred HHHHhccccCCCCCCccEEEEEEEEecCCCcCcCCCCCcEEEEEEEECccccccCCccEEEEEeCceeecCCCCC-cccc
Confidence 98877510 00 0011 0101 135666665 3677776654 8999
Q ss_pred cc-cHHHHHHHHHHHHhCCCCeEEEEc--CCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEE
Q 046821 221 HN-NLLNNILAKIEGNNANAGDAIMLD--KDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLE 296 (361)
Q Consensus 221 t~-n~l~~i~a~~~A~~~g~de~Llln--~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~ 296 (361)
++ ||+.+++++++|+++|+||+|++| ++|+|+|++++|+|+++|++|+||+++ +||+||||+.||++|++.|++|+
T Consensus 250 t~~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~~~iLpGITR~svlela~~~Gi~V~ 329 (403)
T PLN02782 250 TIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIKGTILPGITRKSIIDVARSQGFQVE 329 (403)
T ss_pred hhhhHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHcCCeEE
Confidence 98 999999999999999999999999 489999999999999999999999985 69999999999999999999999
Q ss_pred EEecCHHhHhhcceeeeecCcCceEEEeEE--CCEEc--CCCCCcHHHHHHHHHHHHHHhhc
Q 046821 297 ERRISLSEFHTADEVWTTGTMGEITPVVKI--DGRIV--GDGKVGPVTQRIQKVYKKETEES 354 (361)
Q Consensus 297 e~~i~~~dL~~adevfltnS~~gv~pV~~i--~~~~~--~~~~~g~~~~~l~~~~~~~~~~~ 354 (361)
|+.|+++||.+|||||+|||+.+|+||.+| +|+.+ +.+++||++++|++.|.++..+.
T Consensus 330 Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~g~~~~~~~g~~Gpvt~~L~~~l~~iq~G~ 391 (403)
T PLN02782 330 ERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKRVSYGEGGFGTVSQQLYTVLTSLQMGL 391 (403)
T ss_pred EEECCHHHHhhCCEEEEccCcceEEEEEEEEECCEEEeCCCCCcCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999 89887 77788999999999999988764
No 23
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.7e-48 Score=367.94 Aligned_cols=246 Identities=39% Similarity=0.624 Sum_probs=212.1
Q ss_pred ceEEECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHH
Q 046821 102 LLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTL 181 (361)
Q Consensus 102 ~~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l 181 (361)
.++|+||++++.+++.+++.|++++||+++|||+|+++|+++++++|++||++||+.|+++. +.+.+++......++
T Consensus 2 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~vFE~~r~~~g~~~~l~~H~~RL~~Sa~~l~~~~---~~~~~~~~~~~~~~~ 78 (284)
T COG0115 2 GKIWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNGKLFRLDEHLARLKRSAKRLGLPR---PESEEEIELLIQLLL 78 (284)
T ss_pred CeEeECCEEccCcccccCcccceeccccceeEEEEEeCCcccChHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999995 456777777776666
Q ss_pred HHcc-CC-----------C----CC--------------CCCCCC---CCCeEEEEeccccCCCCCcCcccccccHHHHH
Q 046821 182 IRNV-LP-----------E----WK--------------PPVYDN---THGVNLVTATTRRNSPNNLDSKIHHNNLLNNI 228 (361)
Q Consensus 182 ~~~~-~~-----------~----~~--------------~p~~~~---~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i 228 (361)
..+- .. . .. ++.+.. ..|+.+.+++..|..+.+....+|+.||+.++
T Consensus 79 ~~~~~~~~~y~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~k~~~y~~~~ 158 (284)
T COG0115 79 AKNNLVPGLYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISSPVRRAPPGPGAAKKTGNYLSSV 158 (284)
T ss_pred HhhCCCCceEEEEEEEeecCCCCcCCCCccEEEEEEEecccccCcccccCCeEEEEeehhhccCCCcchhhhhcccHHHH
Confidence 5540 00 0 00 111111 24766666654444444445689999999999
Q ss_pred HHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEe-CCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHh
Q 046821 229 LAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVK-KGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFH 306 (361)
Q Consensus 229 ~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~-~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~ 306 (361)
+++++|+++|+||+|++|.+|+|+||+++|+|+++ ||+++||+.+ ++||||||+.+|++|+++|++|+|+.|+.+||.
T Consensus 159 ~a~~~A~~~G~~eal~~~~~G~V~Eg~~sNvf~v~~dg~~~TP~~~~~iL~GitR~~li~la~~~G~~v~E~~i~~~~l~ 238 (284)
T COG0115 159 LAKREAKAAGADEALLLDEDGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVEERPITLEDLK 238 (284)
T ss_pred HHHHHHHHCCCCEEEEecCCCeEEEcCcceEEEEEECCEEECCCCCCCccccHHHHHHHHHHHHcCceEEEeecCHHHHh
Confidence 99999999999999999999999999999999999 8899999986 699999999999999999999999999999999
Q ss_pred hcceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHHhh
Q 046821 307 TADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEE 353 (361)
Q Consensus 307 ~adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~~ 353 (361)
.|||+|+|||++||+||.+|+++ . +++||+|++|+++|.++...
T Consensus 239 ~adevf~t~t~~~v~PV~~i~~~-~--~~~gpit~~l~~~~~~~~~~ 282 (284)
T COG0115 239 QADEVFLTNTAAGVTPVGLIDGR-V--GQPGPVTKKLRELLTDIQYG 282 (284)
T ss_pred hCCEEEEEccceEEEEEEEECCc-c--CCCChHHHHHHHHHHHHhcc
Confidence 99999999999999999999888 4 68999999999999988764
No 24
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=1.6e-48 Score=363.71 Aligned_cols=218 Identities=35% Similarity=0.578 Sum_probs=191.6
Q ss_pred CcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHcc---------CC-----
Q 046821 122 DSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNV---------LP----- 187 (361)
Q Consensus 122 d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l~~~~---------~~----- 187 (361)
||||+||||+||||++++|++++|++|++||.+||+.|+++ | ++.+.+++.+.+++..+- +.
T Consensus 1 Drg~~~GdgvFEt~~~~~g~~~~l~~Hl~RL~~Sa~~l~~~-~---~~~~~l~~~i~~~i~~~~~~~~~ir~~v~rg~~~ 76 (249)
T cd01559 1 DRGFAYGDGVFETMRALDGRLFLLDAHLARLERSARRLGIP-E---PDLPRLRAALESLLAANDIDEGRIRLILSRGPGG 76 (249)
T ss_pred CCcccccceeEEEEEEECCEEccHHHHHHHHHHHHHhcCcC-C---CCHHHHHHHHHHHHHhCCCCceEEEEEEecCCCC
Confidence 79999999999999999999999999999999999999999 3 467889999998887751 10
Q ss_pred -CCCC-----C-C------CC---CCCCeEEEEeccccCCCCCcCcccccccHHHHHHHHHHHHhCCCCeEEEEcCCCcE
Q 046821 188 -EWKP-----P-V------YD---NTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYV 251 (361)
Q Consensus 188 -~~~~-----p-~------~~---~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i~a~~~A~~~g~de~Llln~~G~V 251 (361)
.+.+ | . +. ..+|+++.+++.+|..+ +.++++||+||+.+++++++|+++|+||+|++|++|+|
T Consensus 77 ~~~~~~~~~~~~~~i~~~~~~~~~~~~gv~l~~~~~~~~~~-~~~~~~Kt~ny~~~~~a~~~a~~~g~de~l~l~~~g~v 155 (249)
T cd01559 77 RGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPVRLGEQ-PLLAGLKHLNYLENVLAKREARDRGADEALFLDTDGRV 155 (249)
T ss_pred CCCCCCCCCCCEEEEEeccCCHHHHhCCcEEEEcccccCCC-CCCCCcchhhhHHHHHHHHHHHhcCCCEEEEEcCCCCE
Confidence 0111 0 0 01 24788999888877544 45689999999999999999999999999999999999
Q ss_pred EecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhhcceeeeecCcCceEEEeEECCEE
Q 046821 252 SETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRI 330 (361)
Q Consensus 252 ~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltnS~~gv~pV~~i~~~~ 330 (361)
+||+++|||++++|+|+||+.+ |+||||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||.+|++.
T Consensus 156 ~E~~~~Nif~~~~~~~~TP~~~~g~L~Gitr~~~l~~~~~~g~~v~e~~i~~~el~~ade~~~~ns~~gi~pV~~id~~- 234 (249)
T cd01559 156 IEGTASNLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAIDDH- 234 (249)
T ss_pred EEecceEEEEEECCEEECCCcccCccccHHHHHHHHHHHHcCceEEEEecCHHHHhhCCEEEEecCccceeEEEEECCc-
Confidence 9999999999999999999985 79999999999999999999999999999999999999999999999999999984
Q ss_pred cCCCCCcHHHHHHHHHH
Q 046821 331 VGDGKVGPVTQRIQKVY 347 (361)
Q Consensus 331 ~~~~~~g~~~~~l~~~~ 347 (361)
.+++||++++|+++|
T Consensus 235 --~~~~~~~~~~l~~~~ 249 (249)
T cd01559 235 --DGPPGPLTRALRELL 249 (249)
T ss_pred --ccCccHHHHHHHHhC
Confidence 346799999998875
No 25
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=2e-47 Score=374.86 Aligned_cols=245 Identities=25% Similarity=0.369 Sum_probs=210.1
Q ss_pred EEECCeeecCCCCccCcCCcccccCceEEEEEEEE---CCee--cCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHH
Q 046821 104 AWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVY---NGKV--FKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIF 178 (361)
Q Consensus 104 ~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~---~G~~--~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~ 178 (361)
.|.||+++|.+++.|++.|++|+|||||||||+++ +|++ |++++|++||.+||++|+|+. ++.+.+.+.+.
T Consensus 81 ~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h~~RL~~SA~rL~lp~----~~~e~~~~~i~ 156 (388)
T PLN02259 81 EFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPS----PSVDQFVNAVK 156 (388)
T ss_pred eEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHHHHHHHHhHHHhCCCC----cCHHHHHHHHH
Confidence 59999999999999999999999999999999999 8987 778999999999999999993 36788999999
Q ss_pred HHHHHccC------------C----------CCCCCC-C----------C-CCCCe---EEEEe-ccccCCCCCcCcccc
Q 046821 179 RTLIRNVL------------P----------EWKPPV-Y----------D-NTHGV---NLVTA-TTRRNSPNNLDSKIH 220 (361)
Q Consensus 179 ~~l~~~~~------------~----------~~~~p~-~----------~-~~~gi---~l~~~-~~~r~~~~~~~~~~K 220 (361)
+++..|-. . -+.++. + . ...|+ ++.++ ++.|..|... +++|
T Consensus 157 ~lv~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~~~~~~~i~~~p~~~~~~~g~~~i~l~v~~~~~Ra~p~~~-g~~K 235 (388)
T PLN02259 157 QTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGA-GGVK 235 (388)
T ss_pred HHHHhccccCCCCCCceEEEEEEEEecCCccCcCCCCCcEEEEEEEechhhhhcCcceEEEEeecceeccCCCCC-cccc
Confidence 98877610 0 000110 0 0 12343 34443 5677766554 8999
Q ss_pred cc-cHHHHHHHHHHHHhCCCCeEEEEcC--CCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEE
Q 046821 221 HN-NLLNNILAKIEGNNANAGDAIMLDK--DGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLE 296 (361)
Q Consensus 221 t~-n~l~~i~a~~~A~~~g~de~Llln~--~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~ 296 (361)
+. ||+.++++.++|+++|+||+|++|. +|+|+|++++|+|+++|++|+||+++ +||+||||+.||++|++.|++|+
T Consensus 236 ~~~NY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~~~iL~GITR~sIl~la~~~G~~V~ 315 (388)
T PLN02259 236 SITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATNGTILEGITRKSVMEIASDQGYQVV 315 (388)
T ss_pred hhhhHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEEcCcEEEEEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHCCCeEE
Confidence 95 9999999999999999999999997 89999999999999999999999985 69999999999999999999999
Q ss_pred EEecCHHhHhhcceeeeecCcCceEEEeEECC--E--EcCCCCCcHHHHHHHHHHHHHHhhc
Q 046821 297 ERRISLSEFHTADEVWTTGTMGEITPVVKIDG--R--IVGDGKVGPVTQRIQKVYKKETEES 354 (361)
Q Consensus 297 e~~i~~~dL~~adevfltnS~~gv~pV~~i~~--~--~~~~~~~g~~~~~l~~~~~~~~~~~ 354 (361)
|+.++++||.+|||+|+|||+.||+||.+|+. + .++.+ .||++++|++.|.++.++.
T Consensus 316 Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~~~~~~~~~~-~g~~t~~L~~~l~~iq~G~ 376 (388)
T PLN02259 316 EKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKRVEYKTG-DESVCQKLRSVLVGIQTGL 376 (388)
T ss_pred EEECCHHHHHhCCEEEEcCCcceEEEEEEEecCCceEEeCCC-CCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999995 3 36654 4899999999999998764
No 26
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=1.4e-45 Score=361.02 Aligned_cols=244 Identities=25% Similarity=0.360 Sum_probs=206.3
Q ss_pred eEEECCeeecCCCCccCcCCcccccCceEEEEEEEE---CCeec--CHHhHHHHHHHHHHHcCCccccccchHHHHHHHH
Q 046821 103 LAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVY---NGKVF--KLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAI 177 (361)
Q Consensus 103 ~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~---~G~~~--~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i 177 (361)
-.|.+++++|..+..+++.+++|+|||||||||+++ +|+++ ++++|++||.+||++|+|+. ++.+.+.+++
T Consensus 76 ~~w~~~~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~----~~~e~~~~~i 151 (384)
T PLN02883 76 GNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHS----PSVHQFIEGV 151 (384)
T ss_pred CcccCCeEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCC----cCHHHHHHHH
Confidence 358999999999999999999999999999999998 57764 77899999999999999993 3678899999
Q ss_pred HHHHHHccCCCCCC------------------------C-------------CCCC--CCCeEEEEecc-ccCCCCCcCc
Q 046821 178 FRTLIRNVLPEWKP------------------------P-------------VYDN--THGVNLVTATT-RRNSPNNLDS 217 (361)
Q Consensus 178 ~~~l~~~~~~~~~~------------------------p-------------~~~~--~~gi~l~~~~~-~r~~~~~~~~ 217 (361)
.+++..| ..|.| + .|.. .+++++.+++. +|..+.. .+
T Consensus 152 ~~lv~~n--~~wvp~~~~~~lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g~~~v~l~~~~~~~Ra~~~g-~g 228 (384)
T PLN02883 152 KQTVLAN--RRWVPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGG-TG 228 (384)
T ss_pred HHHHHhc--cccCCCCCCceEEEEEEEEecCCccCCCCCCCeEEEEEEEecccccccCcceEEEEECccccccCCCC-Cc
Confidence 9998876 11111 0 0100 12455655543 5655544 47
Q ss_pred ccccc-cHHHHHHHHHHHHhCCCCeEEEEcCC--CcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCC
Q 046821 218 KIHHN-NLLNNILAKIEGNNANAGDAIMLDKD--GYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENL 293 (361)
Q Consensus 218 ~~Kt~-n~l~~i~a~~~A~~~g~de~Llln~~--G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~ 293 (361)
.+|+. ||+.++++.++|+++|+||+|++|.+ |+|+|++++|||++++++|+||+++ +|||||||+.||++|++.|+
T Consensus 229 ~~K~~~nYa~~lla~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v~~~~l~TP~l~~~iLpGITR~svl~la~~~G~ 308 (384)
T PLN02883 229 GVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATSGTILGGITRKSIIEIALDLGY 308 (384)
T ss_pred ccchhhhHHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCcCCcCcCHHHHHHHHHHHHCCC
Confidence 89998 89999999999999999999999965 7999999999999999999999986 69999999999999999999
Q ss_pred cEEEEecCHHhHhhcceeeeecCcCceEEEeEECCE--Ec--CCCCCcHHHHHHHHHHHHHHhhc
Q 046821 294 VLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGR--IV--GDGKVGPVTQRIQKVYKKETEES 354 (361)
Q Consensus 294 ~v~e~~i~~~dL~~adevfltnS~~gv~pV~~i~~~--~~--~~~~~g~~~~~l~~~~~~~~~~~ 354 (361)
+|+|+.++++||.+|||+|+|||+.+|+||.+|+++ .+ ..+ .||++++|++.|.++.++.
T Consensus 309 ~V~Er~i~~~eL~~AdEvF~tgTa~~I~PV~~I~~~~~~~~~~~~-~G~vt~~L~~~l~~iq~G~ 372 (384)
T PLN02883 309 KVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTEYKVG-DGIVTQQLRSILLGIQTGS 372 (384)
T ss_pred eEEEEECCHHHHHhCCEeeeccChhheEEEEEEeccCceeecccC-CCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999943 11 222 3899999999999988764
No 27
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-40 Score=313.02 Aligned_cols=244 Identities=31% Similarity=0.543 Sum_probs=215.7
Q ss_pred EECCeeecCCCCccCcCCcccccCceEEEEEEEECC-----eecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHH
Q 046821 105 WVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNG-----KVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFR 179 (361)
Q Consensus 105 ~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G-----~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~ 179 (361)
|..|.+.|.++..+++....|+||+|+||+++++++ ++|+.++|+.||.+||.++-|| .++.+++.+.|.+
T Consensus 70 w~~~~I~p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~i~LFrPd~N~~Rm~~sA~r~~lP----~p~~~e~ie~i~~ 145 (379)
T KOG0975|consen 70 WSQGEISPFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGKIRLFRPDQNMDRMLRSAERACLP----SPDVEEFIEAIKQ 145 (379)
T ss_pred cCCCCccCcCCEeeChhhhceecchhhccccccccCCCCeEEEecchhhHHHHHhhhhhccCC----CCCHHHHHHHHHH
Confidence 889999999999999999999999999999999865 5899999999999999999999 4677888899999
Q ss_pred HHHHccCCCCCCC--------------------------------------CCCC-CCCeEEEEec-cccCCCCCcCccc
Q 046821 180 TLIRNVLPEWKPP--------------------------------------VYDN-THGVNLVTAT-TRRNSPNNLDSKI 219 (361)
Q Consensus 180 ~l~~~~~~~~~~p--------------------------------------~~~~-~~gi~l~~~~-~~r~~~~~~~~~~ 219 (361)
++..+ .+|.|+ .|.. .+|+.|...+ ..|..|.......
T Consensus 146 lv~~~--~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~~~e~~l~vi~spvg~yf~~g~~~v~L~v~~~~~Ra~pgg~g~~k 223 (379)
T KOG0975|consen 146 LVLAD--KEWVPPPGKGSLYIRPLLIGTDPVLGVSPAPEATLFVIVSPVGPYFKSGFKGVNLLVDPEFVRAWPGGTGGVK 223 (379)
T ss_pred HHHhc--CcccCCCCCceEEEeeeeccCCcccccccCCcceEEEEEcccchhccccccceEEEEecceeecCCCCCCcee
Confidence 88876 222211 1111 4677776554 6788898887777
Q ss_pred ccccHHHHHHHHHHHHhCCCCeEEEEcCCC-cEEecCceeEEEEeCCe--EEcCCCCC-CCCchHHHHHHHHHHhCC-Cc
Q 046821 220 HHNNLLNNILAKIEGNNANAGDAIMLDKDG-YVSETNATNIFLVKKGR--VLTPHADY-CLPGITRATVMELVVKEN-LV 294 (361)
Q Consensus 220 Kt~n~l~~i~a~~~A~~~g~de~Llln~~G-~V~E~s~sNlf~v~~g~--l~TP~~~~-iL~GItR~~vl~~~~~~g-~~ 294 (361)
++.||++++++..+|+++|+.++|++|.++ +|+|+++.|||+++++. ++||+.+| |||||||+.|+++|++.| ++
T Consensus 224 ~~~NY~P~vl~q~eA~~~G~~dvLwL~~d~~~ItEv~tmNiF~v~~n~~elvTPp~dg~ILpGvTR~sileLa~~~g~~~ 303 (379)
T KOG0975|consen 224 LGGNYAPNVLAQKEAKSKGASDVLWLDGDGGYITEVGTMNIFMVKKNEDELVTPPLDGTILPGVTRKSILELARDLGEFK 303 (379)
T ss_pred eccccchHHHHHHHHHhcCcceeEEEecCCCceeeccceeEEEEEcCceeEecCCCCCcccCCccHHHHHHHHHHhCceE
Confidence 799999999999999999999999999877 99999999999999988 99999996 899999999999999999 99
Q ss_pred EEEEecCHHhHhhcceeeeecCcCceEEEeEEC-------CEEcCCCCCcHHHHHHHHHHHHHHhhc
Q 046821 295 LEERRISLSEFHTADEVWTTGTMGEITPVVKID-------GRIVGDGKVGPVTQRIQKVYKKETEES 354 (361)
Q Consensus 295 v~e~~i~~~dL~~adevfltnS~~gv~pV~~i~-------~~~~~~~~~g~~~~~l~~~~~~~~~~~ 354 (361)
|+||.++++|+.+|+|+|+|+|...|.||..|. ...++.++.||++++|++.+.++..+.
T Consensus 304 V~Er~vtv~e~~~A~Evf~tGTA~~v~pV~~i~~~~~~i~~~~~~~g~~g~l~~~l~~~l~~iq~g~ 370 (379)
T KOG0975|consen 304 VEERDVTVDELKTADEVFCTGTAAVVSPVGSILYKDEKIHIPTIGEGKEGPLAKKLLSTLTDIQYGR 370 (379)
T ss_pred EEEEEEeHHHhhhhHhhhcccceeeeccccceeecccccceeecCCCCccHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999885 235678888999999999999998775
No 28
>PRK07546 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=294.36 Aligned_cols=188 Identities=23% Similarity=0.298 Sum_probs=157.5
Q ss_pred CceEEEEEEEE-CCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHc-------c-CC---C----CCC
Q 046821 128 GDGVWEGLRVY-NGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRN-------V-LP---E----WKP 191 (361)
Q Consensus 128 G~gvFET~rv~-~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l~~~-------~-~~---~----~~~ 191 (361)
..++||||+++ +|++++|++|++||.+||+.|+++. +.+.+++.+.+++.++ + +. . ..|
T Consensus 3 ~~~lfETi~~~~~G~~~~l~~Hl~RL~~sa~~l~~~~-----~~~~l~~~l~~~~~~~~~~~~vrl~~~~~g~~~i~~~p 77 (209)
T PRK07546 3 DFELIETLRWEPGAGFPRLDRHLARLERSARALGFPC-----DPAAVRAKLAEAVAGAQGPLRLRLTLARDGRLTVETAP 77 (209)
T ss_pred CccEEEEEEEeCCCCcccHHHHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHhhccCCCeEEEEEEcCCCCEEEEEec
Confidence 35899999999 9999999999999999999999983 2456777777776543 0 00 0 001
Q ss_pred -CCCCCCCCeEEEEeccccCCCCCcCcccccccHHHHHHHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEE-c
Q 046821 192 -PVYDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVL-T 269 (361)
Q Consensus 192 -p~~~~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~-T 269 (361)
+......++++.+++.++..++ .+.++||+||+.+++++++|+++|+||+||+|++|+|+||+++|||++++|+|+ |
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~~Kt~nr~~~v~a~~~a~~~g~de~l~l~~~G~v~E~s~~Ni~~~~~~~~~~T 156 (209)
T PRK07546 78 LPPLPPDTVWRVAIARTRLDSAD-PLLRYKTTRRAAYDAARAELPPAEADEVILLNERGEVCEGTITNVFLDRGGGMLTT 156 (209)
T ss_pred CCCCCCCCcEEEEEcCcccCCCC-cchhcccCChHHHHHHHHHHhhCCCCEEEEECCCCcEEEcCceeEEEEECCEEEEC
Confidence 1111235677777777765443 347899999999999999999999999999999999999999999999999999 9
Q ss_pred CCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhhcceeeeecCcCceEEEeEE
Q 046821 270 PHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKI 326 (361)
Q Consensus 270 P~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltnS~~gv~pV~~i 326 (361)
|+.+ |+|+||||+.+++. .+|+|+.++++||.+|||||+|||++||+||..|
T Consensus 157 P~~~~g~L~Gi~R~~ll~~-----~~v~e~~i~~~~L~~adevfl~NSl~gv~pV~~~ 209 (209)
T PRK07546 157 PPLSCGLLPGVLRAELLDA-----GRAREAVLTVDDLKSARAIWVGNSLRGLIRAELI 209 (209)
T ss_pred CCCcCCCCccHHHHHHHhh-----CCeEEEEcCHHHHhhCCEEEEEccceeEEEEEEC
Confidence 9976 79999999999985 5899999999999999999999999999999865
No 29
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=100.00 E-value=5.5e-38 Score=288.77 Aligned_cols=198 Identities=37% Similarity=0.537 Sum_probs=155.4
Q ss_pred cCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHcc-CCCC---------------CCCC----------CCC
Q 046821 143 FKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNV-LPEW---------------KPPV----------YDN 196 (361)
Q Consensus 143 ~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l~~~~-~~~~---------------~~p~----------~~~ 196 (361)
|+|++|++||.+||+.+ +.. .++.+.+.+.+.+++..+- .... .++. ...
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~---~~~~~~l~~~i~~~~~~~~~~~~~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~~~~ 76 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGL---PFSREELREIIQELLEANPDQGEGYIRITVTRGGGPLGGSPPENSAPPPFSIAPPR 76 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTH---SSHHHHHHHHHHHHHHHTTSSSSEEEEEEEEETSSSSSSSECSEEEEEEEEEETCH
T ss_pred CCHHHHHHHHHHHHHHH-ccC---CcCHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCCcCccCccccccccccccccc
Confidence 68999999999999999 542 3578889999999987751 1100 0000 000
Q ss_pred CCCeEEEEe-ccccCCC----CCcCcccccccHHHHHH-HHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcC
Q 046821 197 THGVNLVTA-TTRRNSP----NNLDSKIHHNNLLNNIL-AKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTP 270 (361)
Q Consensus 197 ~~gi~l~~~-~~~r~~~----~~~~~~~Kt~n~l~~i~-a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP 270 (361)
..+...... ...+..+ ....+++|+.||+.+++ +.++|++.|+||+|++|++|+|+||+++|||+++||+|+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~~~~~~~~~~~~~a~~~g~de~ll~d~~G~v~E~~~sNif~~~~~~~~TP 156 (231)
T PF01063_consen 77 RPPPPLVGSVGVRRASPPLPRPNPLPRHKTTNRLANVLAALRAAREKGADEALLLDEDGNVTEGSTSNIFFVKDGTLYTP 156 (231)
T ss_dssp HHHEEEEEECSEECETTTSE-TTTSTTS-BSHHHHHHHHHHHHHHHTTSSEEEEEETTSBEEEESSSEEEEEETTEEEEE
T ss_pred cCCcceeeeeeEEeccccccccCCCCCeeECCcchhhHHHHHHHHhcCcchhheecCCCCcCCCCCcccccccCCEEEcC
Confidence 000111111 1111111 11368999999999999 67777789999999999999999999999999999999999
Q ss_pred CCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhhcceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHH
Q 046821 271 HAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVY 347 (361)
Q Consensus 271 ~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~ 347 (361)
+.+ |+|+||||+.++++++++|++|+|+.++++||.+|||||+|||++||+||.+|+++.++ .||++++|+++|
T Consensus 157 ~~~~giL~Gitr~~ll~~~~~~g~~v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i~~~~~~---~~p~~~~L~~~~ 231 (231)
T PF01063_consen 157 PLDSGILPGITRQLLLELAKELGIPVEERPITLDDLQQADEVFLTNSLRGIRPVKSIDGRSFG---PGPITRRLQEAY 231 (231)
T ss_dssp SGSSSSB--HHHHHHHHHHHHTTSEEEEE-BBHHHHHTHSEEEEEETTTEEEEEEEETTEEST---THHHHHHHHHHH
T ss_pred ChhhhhccHHHHHHHHHHHHhCCCCcEEEEeCHHHhhhhhheEEecchhhEEEEEEECCEECC---CCHHHHHHHHhC
Confidence 986 69999999999999999999999999999999999999999999999999999999997 699999999987
No 30
>PRK07101 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-32 Score=243.07 Aligned_cols=174 Identities=15% Similarity=0.191 Sum_probs=132.8
Q ss_pred ceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHc----c-CCC----CC-CCC-CCCC
Q 046821 129 DGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRN----V-LPE----WK-PPV-YDNT 197 (361)
Q Consensus 129 ~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l~~~----~-~~~----~~-~p~-~~~~ 197 (361)
.++||||++++|++++|++|++||.+||+.|++.. .+++.+.+.+.+.++.... + +.. .. .|. ....
T Consensus 3 ~~l~ETir~~~g~~~~l~~Hl~RL~~Sa~~l~~~~--~~~~~~~~~~~~~~~~~~~~r~rl~~~~g~~~~~~~~~~~~~~ 80 (187)
T PRK07101 3 FPLFETIAIEDGEIQNLSYHQQRYERTLAEFYGKE--APFDLAEIIQPPTELQEGLVRCRIDYNAEIYQVQYFPYQRRPI 80 (187)
T ss_pred CcceEEEeeeCCeeccHHHHHHHHHHHHHHHcccC--CcccHHHHhhchhhhcCCCEEEEEEecCCcEEEEEEcCCCCCc
Confidence 47999999999999999999999999999998853 1246666766665431111 0 000 00 110 1123
Q ss_pred CCeEEEEeccccCCCCCcCcccccccHHHHHHHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCCCCCC
Q 046821 198 HGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLP 277 (361)
Q Consensus 198 ~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~~iL~ 277 (361)
.|++++.++.. ..++||.||. .+....|++.|+||+|++| +|+|+||+++|||+++||+|+||+. ++|+
T Consensus 81 ~~~~~~~~~~~-------~~~~Kt~~r~--~~~~~~a~~~g~de~l~~~-~G~v~E~~~sNi~~~~~~~~~TP~~-~~L~ 149 (187)
T PRK07101 81 RSFQPVYCDDI-------DYSLKYTDRS--ALNELFAQKGECDEIIIIK-NGLVTDTSIGNLAFFDGKQWFTPKK-PLLK 149 (187)
T ss_pred CceEEEecCCc-------ccccccCCHH--HHHHHHHHhCCCCEEEEEc-CCEEEEccceEEEEEECCEEEcCCC-CCcc
Confidence 36666543322 3578999772 3444445668999999998 8999999999999999999999995 8999
Q ss_pred chHHHHHHHHHHhCCCcEEEEecCHHhHhhcceeeeecCcCce
Q 046821 278 GITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEI 320 (361)
Q Consensus 278 GItR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltnS~~gv 320 (361)
||||+.+++. | +|+|+.|+++||.+|||+|+|||++|+
T Consensus 150 Gi~R~~ll~~----~-~v~e~~i~~~~L~~ad~~~~~nsl~G~ 187 (187)
T PRK07101 150 GTQRARLLDE----G-KIKEKDITVEDLLQYEEIRLINAMNGF 187 (187)
T ss_pred HHHHHHHHcc----C-CEEEEecCHHHHhcCCEEEEEecccCC
Confidence 9999999983 6 899999999999999999999999984
No 31
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=45.34 E-value=60 Score=25.40 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=38.1
Q ss_pred CCCCchHH-HHHHHHHHhCCCcEE---------EEecCHHhHhhcceeeeecCcCceEEEeEECCEEc
Q 046821 274 YCLPGITR-ATVMELVVKENLVLE---------ERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIV 331 (361)
Q Consensus 274 ~iL~GItR-~~vl~~~~~~g~~v~---------e~~i~~~dL~~adevfltnS~~gv~pV~~i~~~~~ 331 (361)
|+-.+++- +.+-+.+++.|+++. +..++.+++..||-+++++.... .-.++.++.+
T Consensus 10 G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~~--~~~rf~gk~v 75 (96)
T cd05569 10 GIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPV--DDERFAGKRV 75 (96)
T ss_pred chhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCCC--chhhhCCCeE
Confidence 44334443 345567889999877 45677799999999999887642 2266667655
No 32
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=38.11 E-value=1.8 Score=42.33 Aligned_cols=134 Identities=19% Similarity=0.140 Sum_probs=78.3
Q ss_pred CCCcccccCCCCCCCCCcc-chhhHHHHHhHhcCCCCCCCCCCCCCCHHHHHHHHhhhHHHHHHHHhhccccCCCCCCCC
Q 046821 12 IPFQATMLRWEAGPKPIDG-LWAKWWYESVHKSTGFTSAREYPMPFPMSLYDLLEQSLPFYNMLRRNVRKTSSLLKSPLP 90 (361)
Q Consensus 12 i~f~~~mL~W~~g~~~~~~-~w~~~w~~~~~~Stgf~~~~~~~~~~~~~~~~~~~~~~p~Ye~l~~~~~~~~~~~~~~~~ 90 (361)
++|+ ++. |..+...-++ .|...|+.-++-++||-...+.....+.. ..+.+ |.|..++-.+---|..+ |
T Consensus 63 ~k~~-~~g-w~~~~I~p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~-i~LFr---Pd~N~~Rm~~sA~r~~l----P 132 (379)
T KOG0975|consen 63 IKWS-EDG-WSQGEISPFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGK-IRLFR---PDQNMDRMLRSAERACL----P 132 (379)
T ss_pred Eecc-ccC-cCCCCccCcCCEeeChhhhceecchhhccccccccCCCCe-EEEec---chhhHHHHHhhhhhccC----C
Confidence 4555 555 8777665443 66655666666666664433222111111 22222 55544442222223223 2
Q ss_pred CCC-CCCCCCCCceEEECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHH
Q 046821 91 EPD-LPVPANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKG 155 (361)
Q Consensus 91 ~~~-~~~~~~~~~~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~S 155 (361)
.++ .+..-+-+.+++.|.+|+|.......-....+.-++.+....+..+..++-+..|..+..++
T Consensus 133 ~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~~~e~~l~vi~spvg~yf~~ 198 (379)
T KOG0975|consen 133 SPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSPAPEATLFVIVSPVGPYFKS 198 (379)
T ss_pred CCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCcccccccCCcceEEEEEcccchhccc
Confidence 222 12222335578999999998766555555666667788888888888899999999998888
No 33
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=35.62 E-value=89 Score=23.36 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=37.0
Q ss_pred eEEcCCCC-C-CCCchHHHH-HHHHHHhCCCcEEEEecCHHhHhhcceeeeecCcCceEEEeEECCEEcCC
Q 046821 266 RVLTPHAD-Y-CLPGITRAT-VMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGD 333 (361)
Q Consensus 266 ~l~TP~~~-~-iL~GItR~~-vl~~~~~~g~~v~e~~i~~~dL~~adevfltnS~~gv~pV~~i~~~~~~~ 333 (361)
++|+|+.+ . ++++-.+.. +.-+++.+|++.+...+.. .+ + .+-.|-+|+-.+||..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~kv~~~L~elglpye~~~~~~-----~~--~--~~P~GkVP~L~~dg~vI~e 63 (74)
T cd03079 2 ALYQPYEEEQILLPDNASCLAVQTFLKMCNLPFNVRCRAN-----AE--F--MSPSGKVPFIRVGNQIVSE 63 (74)
T ss_pred ccccCCccCeeecCCCCCHHHHHHHHHHcCCCcEEEecCC-----cc--c--cCCCCcccEEEECCEEEeC
Confidence 47888764 3 455555543 4446788999877553221 11 1 1124999999999998864
No 34
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=34.99 E-value=62 Score=24.88 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=31.6
Q ss_pred CCCCchHHHH-HHHHHHhCCCcEE---------EEecCHHhHhhcceeeeecCcC
Q 046821 274 YCLPGITRAT-VMELVVKENLVLE---------ERRISLSEFHTADEVWTTGTMG 318 (361)
Q Consensus 274 ~iL~GItR~~-vl~~~~~~g~~v~---------e~~i~~~dL~~adevfltnS~~ 318 (361)
|+=...+-.. +-+.++++|+.+. +..++.+++..||-+++.+...
T Consensus 9 G~Aht~lAae~L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~~ 63 (85)
T TIGR00829 9 GIAHTFMAAEALEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADRE 63 (85)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccCC
Confidence 3333344333 3456778998777 5568889999999999988653
No 35
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=34.08 E-value=63 Score=24.95 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCcEE---------EEecCHHhHhhcceeeeecCcCceEEEeEECCEEc
Q 046821 282 ATVMELVVKENLVLE---------ERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIV 331 (361)
Q Consensus 282 ~~vl~~~~~~g~~v~---------e~~i~~~dL~~adevfltnS~~gv~pV~~i~~~~~ 331 (361)
+.+-+.++++|+.+. +..++.+++..||-|++.+... +.--.++.|+.+
T Consensus 4 eaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~~-i~~~~rf~gk~v 61 (88)
T PRK10474 4 EALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDIG-IKFEERFAGKTI 61 (88)
T ss_pred HHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCC-CcchhccCCCce
Confidence 345667888998776 4468889999999999988653 333556666644
No 36
>PF14144 DOG1: Seed dormancy control
Probab=30.87 E-value=53 Score=25.05 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.5
Q ss_pred CCHHHHHHHHhhhHHHHHHHHhhcc
Q 046821 56 FPMSLYDLLEQSLPFYNMLRRNVRK 80 (361)
Q Consensus 56 ~~~~~~~~~~~~~p~Ye~l~~~~~~ 80 (361)
-+.+++.+|+.++.+|+++++.+-.
T Consensus 16 ~~~~L~~lV~~~~~Hy~~y~~~K~~ 40 (80)
T PF14144_consen 16 SDDELRSLVDKVMSHYDEYYRAKSA 40 (80)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999877654
No 37
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=30.54 E-value=2e+02 Score=20.40 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCcEEEEecCHHhHhhcceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHH
Q 046821 280 TRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRI 343 (361)
Q Consensus 280 tR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l 343 (361)
--..+.-+++..|++.+...+.... -+-.|-+|+-..+|..+.+ ...+.+.|
T Consensus 18 ~~~~v~~~L~~~~i~~~~~~~~~~~----------~~p~g~vP~l~~~g~~l~e--s~~I~~yL 69 (72)
T cd03054 18 ECLKVETYLRMAGIPYEVVFSSNPW----------RSPTGKLPFLELNGEKIAD--SEKIIEYL 69 (72)
T ss_pred HHHHHHHHHHhCCCceEEEecCCcc----------cCCCcccCEEEECCEEEcC--HHHHHHHH
Confidence 3344555677789998887765432 2356899999999988753 23444433
No 38
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=27.63 E-value=2.3e+02 Score=20.87 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhCCCcEEEEecCHHhHhhcceeeeecCcCceEEEeEEC-CEEcCCCCCcHHHHHHHH
Q 046821 279 ITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKID-GRIVGDGKVGPVTQRIQK 345 (361)
Q Consensus 279 ItR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltnS~~gv~pV~~i~-~~~~~~~~~g~~~~~l~~ 345 (361)
--...+.-++...|++.+...+...+-....+-+ -.+-.|-+||-..+ |..+.+ +..+++.|.+
T Consensus 17 p~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~e--S~aI~~yL~~ 81 (84)
T cd03038 17 PNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGD--SFAIAEYLEE 81 (84)
T ss_pred ChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeC--HHHHHHHHHH
Confidence 3334444456668888877766544322211112 23347889999877 677653 3456555543
No 39
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=27.05 E-value=2.3e+02 Score=20.39 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCcEEEEecCHHhHhhcceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHH
Q 046821 280 TRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVY 347 (361)
Q Consensus 280 tR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~ 347 (361)
-...+.-+++..|++.+...+... -.+-.|-+||-..+|..+.+ +..+++.|.+.|
T Consensus 19 ~~~~v~~~L~~~gi~~~~~~~~~~----------~~~p~g~vPvl~~~g~~l~e--S~~I~~yL~~~~ 74 (75)
T cd03080 19 FCLKVETFLRMAGIPYENKFGGLA----------KRSPKGKLPFIELNGEKIAD--SELIIDHLEEKY 74 (75)
T ss_pred HHHHHHHHHHHCCCCcEEeecCcc----------cCCCCCCCCEEEECCEEEcC--HHHHHHHHHHHc
Confidence 344555667778988777665431 13356889999999988864 356666665543
No 40
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=25.26 E-value=46 Score=26.53 Aligned_cols=21 Identities=10% Similarity=0.450 Sum_probs=15.3
Q ss_pred hHHHHhhHcCCCCcccccCCC
Q 046821 2 TLRSLCEDLDIPFQATMLRWE 22 (361)
Q Consensus 2 ~l~~~C~~vgi~f~~~mL~W~ 22 (361)
.|.+||++.|+++..=-.-.+
T Consensus 46 LM~aYc~r~Gl~~~s~RFlFd 66 (99)
T KOG1769|consen 46 LMKAYCERQGLSMNSLRFLFD 66 (99)
T ss_pred HHHHHHHHcCCccceEEEEEC
Confidence 588999999999865333333
No 41
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=24.14 E-value=76 Score=22.60 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCcEEEEecCHHhHhhc-ceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHH
Q 046821 283 TVMELVVKENLVLEERRISLSEFHTA-DEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRI 343 (361)
Q Consensus 283 ~vl~~~~~~g~~v~e~~i~~~dL~~a-devfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l 343 (361)
.+.-++++.|++++...+...+=... ++..-.| -.|-+|+-..+|..+.. ...+++.|
T Consensus 14 ~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~-p~~~vP~l~~~~~~l~e--s~aI~~yL 72 (74)
T cd03045 14 AVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLN-PQHTVPTLVDNGFVLWE--SHAILIYL 72 (74)
T ss_pred HHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhC-cCCCCCEEEECCEEEEc--HHHHHHHH
Confidence 44556777899988887765322211 2222233 45788999888877653 34444433
No 42
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=23.47 E-value=1.1e+02 Score=25.33 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCcEE---------EEecCHHhHhhcceeeeecCc
Q 046821 282 ATVMELVVKENLVLE---------ERRISLSEFHTADEVWTTGTM 317 (361)
Q Consensus 282 ~~vl~~~~~~g~~v~---------e~~i~~~dL~~adevfltnS~ 317 (361)
+.|-+.|+++|+.|. +-.++.+|+..||.|++..-.
T Consensus 22 eaLe~~A~~~g~~IKVETqGs~G~eN~LT~edI~~Ad~VI~AaD~ 66 (122)
T COG1445 22 EALEKAAKKLGVEIKVETQGAVGIENRLTAEDIAAADVVILAADI 66 (122)
T ss_pred HHHHHHHHHcCCeEEEEcCCcccccCcCCHHHHHhCCEEEEEecc
Confidence 345567888888664 447999999999999987643
No 43
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=22.76 E-value=75 Score=22.60 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=28.8
Q ss_pred ceeEEEEeCCeEEcCCCCC-CCCchHHHHHHHHHHhCC
Q 046821 256 ATNIFLVKKGRVLTPHADY-CLPGITRATVMELVVKEN 292 (361)
Q Consensus 256 ~sNlf~v~~g~l~TP~~~~-iL~GItR~~vl~~~~~~g 292 (361)
-++++++.|++.+--.+.. +|-||--...-++|++.|
T Consensus 31 ~~~f~ivi~~q~i~velkdivlvgvdvgqfh~wceqng 68 (68)
T PF13051_consen 31 ESHFAIVIGEQSIDVELKDIVLVGVDVGQFHEWCEQNG 68 (68)
T ss_pred CCcEEEEECCeEEEEEeeeEEEEEecHHHHHHHHhhCC
Confidence 4678888888887776655 589999888888887654
No 44
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=20.72 E-value=96 Score=22.39 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=35.9
Q ss_pred HHHHHHHhCCCcEEEEecCHHhHhh-cceeeeecCcCceEEEeEEC-CEEcCCCCCcHHHHHHHHH
Q 046821 283 TVMELVVKENLVLEERRISLSEFHT-ADEVWTTGTMGEITPVVKID-GRIVGDGKVGPVTQRIQKV 346 (361)
Q Consensus 283 ~vl~~~~~~g~~v~e~~i~~~dL~~-adevfltnS~~gv~pV~~i~-~~~~~~~~~g~~~~~l~~~ 346 (361)
.+.-++++.|++.+...+...+-.. .++..-.| -.|-+||-..+ |..+.. +..+++-|.+.
T Consensus 13 ~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~n-p~~~vP~l~~~~g~~l~e--S~aI~~yL~~~ 75 (77)
T cd03057 13 APHIALEELGLPFELVRVDLRTKTQKGADYLAIN-PKGQVPALVLDDGEVLTE--SAAILQYLADL 75 (77)
T ss_pred HHHHHHHHcCCCceEEEEecccCccCCHhHHHhC-CCCCCCEEEECCCcEEEc--HHHHHHHHHHh
Confidence 3444677789888877666543222 22333334 46888999887 666643 45666655443
No 45
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=20.48 E-value=1.6e+02 Score=22.48 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCcEEEEecCHHhHhhcceeeeecCcCceEEEeEEC--CEEcCCCCCcHHHHHHHHHHHH
Q 046821 283 TVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKID--GRIVGDGKVGPVTQRIQKVYKK 349 (361)
Q Consensus 283 ~vl~~~~~~g~~v~e~~i~~~dL~~adevfltnS~~gv~pV~~i~--~~~~~~~~~g~~~~~l~~~~~~ 349 (361)
.|-+.+++.|++|..-. .-+|+..+|.+.+|+--..++.+..+. ...|.. .|.....|.+.+++
T Consensus 12 ~v~~~L~~~GyeVv~l~-~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA--~G~T~eEI~~~v~~ 77 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLE-NEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINA--SGLTAEEIVQEVEE 77 (80)
T ss_pred HHHHHHHHCCCEEEecC-CccccCCcCEEEEECCCcccccccccccCceEEec--CCCCHHHHHHHHHH
Confidence 56778889999887433 334688999999999777766554322 223332 34444444444443
No 46
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=20.28 E-value=1.5e+02 Score=24.18 Aligned_cols=57 Identities=14% Similarity=0.101 Sum_probs=36.8
Q ss_pred CCCCchHHHH-HHHHHHhCCCcEE---------EEecCHHhHhhcceeeeecCcCceEEEeEECCEEc
Q 046821 274 YCLPGITRAT-VMELVVKENLVLE---------ERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIV 331 (361)
Q Consensus 274 ~iL~GItR~~-vl~~~~~~g~~v~---------e~~i~~~dL~~adevfltnS~~gv~pV~~i~~~~~ 331 (361)
|+=...+-.. +-+.+++.|+.+. +..++.+++..||-|++.+... +.--.++.|+.+
T Consensus 14 GiAht~lAAeaL~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~~-~~~~~rF~gk~v 80 (114)
T PRK10427 14 GVAHTYMAAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDIE-LAGAERFEHCRY 80 (114)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCC-CCchhhhCCCeE
Confidence 4333334333 4456778998777 4467889999999999988653 222445666544
No 47
>PRK03094 hypothetical protein; Provisional
Probab=20.16 E-value=1.8e+02 Score=22.22 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=40.7
Q ss_pred HHHHHHHhCCCcEEEEecCHHhHhhcceeeeecCcCceEEEeEECCE--EcCCCCCcHHHHHHHHHHHH
Q 046821 283 TVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGR--IVGDGKVGPVTQRIQKVYKK 349 (361)
Q Consensus 283 ~vl~~~~~~g~~v~e~~i~~~dL~~adevfltnS~~gv~pV~~i~~~--~~~~~~~g~~~~~l~~~~~~ 349 (361)
.|-+.+++.|+.|..=. +.+++..+|.+.+|+--..++.+.....+ .+. ..|.....|.+.+++
T Consensus 12 ~i~~~L~~~GYeVv~l~-~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~--A~G~TaeEI~~~ve~ 77 (80)
T PRK03094 12 DVQQALKQKGYEVVQLR-SEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVIT--ASGLTADEICQQVES 77 (80)
T ss_pred HHHHHHHHCCCEEEecC-cccccCCcCEEEEeCCCcceecccccccCCcEEE--cCCCCHHHHHHHHHH
Confidence 46678889999887321 23457889999999987777776644322 222 235555555555544
No 48
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=20.08 E-value=1.3e+02 Score=21.14 Aligned_cols=59 Identities=5% Similarity=0.064 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCcEEEEecCHHhHhhcceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHH
Q 046821 282 ATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQK 345 (361)
Q Consensus 282 ~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~ 345 (361)
+.+.-++++.|++.++..+.... ...+.--.| -.|-+|+-..+|..+.. ...+.+.|.+
T Consensus 13 ~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~-p~~~vP~l~~~~~~l~e--s~aI~~yL~~ 71 (73)
T cd03059 13 HRVRIVLAEKGVSVEIIDVDPDN--PPEDLAELN-PYGTVPTLVDRDLVLYE--SRIIMEYLDE 71 (73)
T ss_pred HHHHHHHHHcCCccEEEEcCCCC--CCHHHHhhC-CCCCCCEEEECCEEEEc--HHHHHHHHHh
Confidence 44455677789999988876542 222333334 45788988877776643 3455555543
Done!