RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 046821
(361 letters)
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 285 bits (731), Expect = 1e-95
Identities = 112/277 (40%), Positives = 154/277 (55%), Gaps = 41/277 (14%)
Query: 105 WVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIV 164
++ E VPR++AKVSVFD GDGV+E +RVYNGK F L+EHLDRL + ++ I
Sbjct: 1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVYNGKPFALDEHLDRLYRSAKELRIDIP 60
Query: 165 WYMELVIMVKQAIFRTLIRNVLPE------------------------------WKPPVY 194
+ E +K+ I + +N E P+
Sbjct: 61 YTRE---ELKELIRELVAKNEGGEGDVYIQVTRGVGPRGHDFPKCVKPTVVIITQPLPLP 117
Query: 195 DNT---HGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYV 251
GV ++T R D K NLLNN+LAK E A A +AI+LD DG V
Sbjct: 118 PAELLEKGVRVITVPDIRW--LRCDIKSL--NLLNNVLAKQEAKEAGADEAILLDADGLV 173
Query: 252 SETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTADE 310
+E +++N+F+VK G ++TP D LPGITRATV+EL + + +EER SL E +TADE
Sbjct: 174 TEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADE 233
Query: 311 VWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVY 347
V+ T T E+ PVV+IDGR +GDGK GPVT+R+++ Y
Sbjct: 234 VFLTSTTAEVMPVVEIDGRPIGDGKPGPVTKRLREAY 270
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 243 bits (622), Expect = 5e-79
Identities = 110/294 (37%), Positives = 168/294 (57%), Gaps = 47/294 (15%)
Query: 102 LLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGK 161
L ++ E VP+++AKVSVFD GDGV+EG+R YNG+VF+L+EH+DRL K
Sbjct: 3 QLIYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAYNGRVFRLKEHIDRLYDS----AK 58
Query: 162 VIVWYMELVIM---VKQAIFRTLIRNVLPEW---------------------KPPV---- 193
I +E+ + + + + TL +N L + KP V
Sbjct: 59 AI--MLEIPLSKEEMTEIVLETLRKNNLRDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIA 116
Query: 194 ----------YDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAI 243
Y+ G+ ++T +TRRN P+ L ++ N LNNILAKIE N A +AI
Sbjct: 117 EPIGLYPGELYEK--GLKVITVSTRRNRPDALSPQVKSLNYLNNILAKIEANLAGVDEAI 174
Query: 244 MLDKDGYVSETNATNIFLVKKGRVLTPHADY-CLPGITRATVMELVVKENLVLEERRISL 302
ML+ +GYV+E NIF+VK G+++TP L GITR V+E+ + + + E +L
Sbjct: 175 MLNDEGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPVREELFTL 234
Query: 303 SEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGV 356
+ +TADEV+ TGT E+ PVVK+DGR++GDGK GP+T+++ + +++ T++ G
Sbjct: 235 HDLYTADEVFLTGTAAEVIPVVKVDGRVIGDGKPGPITKKLLEEFRELTKKDGT 288
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 229 bits (587), Expect = 5e-74
Identities = 94/256 (36%), Positives = 139/256 (54%), Gaps = 30/256 (11%)
Query: 122 DSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFG-KVIVWYMELVIMVKQAIFR- 179
D + GDGV+EGLR G++F+L+EHLDRL + ++ G + EL +K+ +
Sbjct: 1 DRGLHYGDGVFEGLRAGKGRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAAN 60
Query: 180 ---------TLIRNVLP------------------EWKPPVYDNTHGVNLVTATTRRNSP 212
L R V GV L+T+ RR +
Sbjct: 61 NGASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPDRRRAA 120
Query: 213 NNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHA 272
LN++LAK E A A +A++LD +GYV+E +A+N+F+VK G ++TP
Sbjct: 121 PGGTGDAKTGGNLNSVLAKQEAAEAGADEALLLDDNGYVTEGSASNVFIVKDGELVTPPL 180
Query: 273 DYC-LPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIV 331
D LPGITR +V+EL + + +EER ISL E + ADEV+ TGT E+TPV +IDGR +
Sbjct: 181 DGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGI 240
Query: 332 GDGKVGPVTQRIQKVY 347
GDGK GPVT++++++
Sbjct: 241 GDGKPGPVTRKLRELL 256
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 195 bits (498), Expect = 2e-60
Identities = 93/285 (32%), Positives = 143/285 (50%), Gaps = 43/285 (15%)
Query: 105 WVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGK----VFKLEEHLDRLVKGKQKFG 160
W+ E V +DAKV V + G GV+EG+R Y+ +F+L+EH+ RL + +
Sbjct: 1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDKGPAIFRLKEHIQRLYDSAKIYR 60
Query: 161 KVIVWYMELVIMVKQAIFRTLIRNVLPE---------------WKPPVYDNTH------- 198
I + E +M +A TL +N L P
Sbjct: 61 MEIPYSKE-ELM--EATRETLRKNNLRSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWP 117
Query: 199 ------------GVNLVTATTRRNSPNNLDSKIHH-NNLLNNILAKIEGNNANAGDAIML 245
G++ ++ RRN+PN + + N LN++LAK E +AI+L
Sbjct: 118 WGAYLGEEALEKGIDAKVSSWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILL 177
Query: 246 DKDGYVSETNATNIFLVKKGRVLTPH-ADYCLPGITRATVMELVVKENLVLEERRISLSE 304
D +GYV+E + NIF+VK G + TP LPGITR TV+ L + + + E+ IS E
Sbjct: 178 DVEGYVAEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREE 237
Query: 305 FHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKK 349
+TADE + TGT EITP+ ++DGR +G+G+ GPVT+++Q+ +
Sbjct: 238 LYTADEAFFTGTAAEITPIREVDGRKIGNGRRGPVTKKLQEAFFD 282
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 192 bits (491), Expect = 2e-59
Identities = 100/283 (35%), Positives = 149/283 (52%), Gaps = 37/283 (13%)
Query: 103 LAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKV 162
WV E+VP +DAK+SV D + GDGV+E LR YNGK+F+L+EHL RL + ++ G
Sbjct: 3 KIWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNGKLFRLDEHLARLKRSAKRLGLP 62
Query: 163 IVWYMELVIMVKQ-----------AIFRTLIRN------VLPEWKPPVYDNTH------- 198
E + ++ Q R L+R V +P +
Sbjct: 63 RPESEEEIELLIQLLLAKNNLVPGLYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLK 122
Query: 199 ------GVNLV-TATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYV 251
GV LV ++ RR P +K N L+++LAK E A A +A++LD+DGYV
Sbjct: 123 GGRLEKGVVLVISSPVRRAPPGPGAAKKTGN-YLSSVLAKREAKAAGADEALLLDEDGYV 181
Query: 252 SETNATNIFLVKK-GRVLTPHADYC-LPGITRATVMELVVKENLVLEERRISLSEFHTAD 309
+E +N+F VK G ++TP LPGITR +++EL + L +EER I+L + AD
Sbjct: 182 TEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVEERPITLEDLKQAD 241
Query: 310 EVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETE 352
EV+ T T +TPV IDGR+ G+ GPVT++++++
Sbjct: 242 EVFLTNTAAGVTPVGLIDGRV---GQPGPVTKKLRELLTDIQY 281
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 188 bits (478), Expect = 2e-57
Identities = 110/297 (37%), Positives = 166/297 (55%), Gaps = 43/297 (14%)
Query: 100 KNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKF 159
N ++ E V ++ A VSV+D GDGV+EG+R Y G VF L+EH+ RL +
Sbjct: 2 GNQYIYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSYGGNVFCLKEHVKRLYES---- 57
Query: 160 GKVIVWYMELVIM-VKQAIFRTLIRNVLPEW---------------------KPPV---- 193
K I+ + L + +++A+ +TL +N + KP V
Sbjct: 58 AKSILLTIPLTVDEMEEAVLQTLQKNEYADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIA 117
Query: 194 ----------YDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAI 243
YDN G+++V+ +RRN+P+ LD +I N LNN+L KIE A +A+
Sbjct: 118 EQLKLFPQEFYDN--GLSVVSVASRRNTPDALDPRIKSMNYLNNVLVKIEAAQAGVLEAL 175
Query: 244 MLDKDGYVSETNATNIFLVKKGRVLTPHADY-CLPGITRATVMELVVKENLVLEERRISL 302
ML++ GYV E + N+F+VK G+VLTP + L GITR +V+EL + ++ EER +
Sbjct: 176 MLNQQGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTR 235
Query: 303 SEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGVPIP 359
+ + ADEV+ TGT E+ PVVK+D R +GDGK G VT+++ + +KK T E GV +P
Sbjct: 236 HDVYVADEVFLTGTAAELIPVVKVDSREIGDGKPGSVTKQLTEEFKKLTRERGVRVP 292
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 184 bits (471), Expect = 4e-56
Identities = 92/292 (31%), Positives = 146/292 (50%), Gaps = 48/292 (16%)
Query: 98 ANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGK----VFKLEEHLDRLV 153
A++ W E+VP +DAKV V + G GV+EG+R Y+ +F+L EH RL
Sbjct: 3 ADRAGYIWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGPAIFRLREHTKRLF 62
Query: 154 KGKQKFGKVIVWYMEL---VIMVKQAIFRTLIRNVLPEW--KPPVY-----------DNT 197
+ ME+ V + +A + +N L +P V+
Sbjct: 63 NSAKILR------MEIPYSVDELMEAQREVVRKNNLKSAYIRPLVFVGDEGLGVRPHGLP 116
Query: 198 --------------------HGVNLVTATTRRNSPNNLDSKIHHN-NLLNNILAKIEGNN 236
G+ + ++ R++PN++ ++ + N LN+ILAK E
Sbjct: 117 TDVAIAAWPWGAYLGEEALEKGIRVKVSSWTRHAPNSIPTRAKASGNYLNSILAKTEARR 176
Query: 237 ANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTP-HADYCLPGITRATVMELVVKENLVL 295
+A++LD +GYVSE + NIF+V+ G + TP L GITR TV+ L + +
Sbjct: 177 NGYDEALLLDVEGYVSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEV 236
Query: 296 EERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVY 347
ERRI+ E + ADEV+ TGT E+TP+ ++DGR +G+GK GP+T+++Q Y
Sbjct: 237 IERRITRDELYIADEVFFTGTAAEVTPIREVDGRQIGNGKRGPITEKLQSAY 288
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 155 bits (394), Expect = 4e-45
Identities = 86/278 (30%), Positives = 138/278 (49%), Gaps = 36/278 (12%)
Query: 106 VGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVW 165
++V R++AK+ + D Q GDGV+E +RVYNGK+F + EH+DRL K I +
Sbjct: 4 WNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVYNGKLFTVNEHIDRLYASAAKIRIDIPY 63
Query: 166 YMELVIMVKQ-----------AIFRTLIRNVLP-------------------EWKPPVYD 195
E + + ++ + R V P E P +
Sbjct: 64 TKEELHQLLHELVEKNNLNTGHVYFQVTRGVAPRNHQFPAGTVKPVITAYTKEVPRPEEN 123
Query: 196 NTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETN 255
GV +T R L I NLL N+LAK E + A +AI L + G V+E +
Sbjct: 124 LEKGVKAITVEDIRW----LRCDIKSLNLLGNVLAKQEAHEKGAYEAI-LHRGGTVTEGS 178
Query: 256 ATNIFLVKKGRVLT-PHADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTT 314
++N++ +K G + T P + L GITR ++ + + ++E + E ADEV+ +
Sbjct: 179 SSNVYGIKDGVLYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNADEVFVS 238
Query: 315 GTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETE 352
T EITPV++IDG+ +GDGK GP T+++QK ++++
Sbjct: 239 STTAEITPVIEIDGQQIGDGKPGPWTRQLQKAFEEKIP 276
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 154 bits (391), Expect = 2e-44
Identities = 87/282 (30%), Positives = 137/282 (48%), Gaps = 42/282 (14%)
Query: 105 WVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIV 164
+V + V ++A++S FD G GV+E R+YNG F L++H DRL I
Sbjct: 3 YVNGQYVEEEEARISPFDHGYLYGLGVFETFRIYNGHPFLLDDHYDRLNDALDTLQ--IE 60
Query: 165 WYM---ELVIMVKQAIFRTLIRNVLPEWK-----------PPVYDN-------------- 196
W M E+++++K + + + N + +Y+
Sbjct: 61 WTMTKDEVLLILKNLLEKNGLENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPG 120
Query: 197 ----THGVNLVTATTRRNSPN-NLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYV 251
GV L RRN+P K HH LNNIL K E N + I L ++GYV
Sbjct: 121 LPAEKEGVVL---KQRRNTPEGAFRLKSHH--YLNNILGKREIGNDPNKEGIFLTEEGYV 175
Query: 252 SETNATNIFLVKKGRVLTPHADY-CLPGITRATVMELVVKENLVLEERRISLSEFHTADE 310
+E +N+F VK V TP + L GITRA V++++ + + ++E + E +ADE
Sbjct: 176 AEGIVSNLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADE 235
Query: 311 VWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETE 352
V+ T ++ EI P+ +I+ R GKVG VT+R+Q +Y+ + E
Sbjct: 236 VFVTNSIQEIVPLTRIEER-DFPGKVGMVTKRLQNLYEMQRE 276
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 149 bits (378), Expect = 2e-42
Identities = 87/293 (29%), Positives = 142/293 (48%), Gaps = 51/293 (17%)
Query: 104 AWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVI 163
A+V V +A+V + D Q DG++E V +GK+ L+ HL RL + + I
Sbjct: 5 AYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVRDGKLVDLDRHLARLFRSLGEIR--I 62
Query: 164 VWYM---ELVIMVKQAIFRTLIRNVL------------------PEWKPPVY-------- 194
M ELV ++++ I R +R L + KP V
Sbjct: 63 APPMTRAELVEVLRELIRRNRVREGLVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDF 122
Query: 195 -----DNTHGVNLVTAT----TRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIML 245
G+ ++T R + I LL N+LAK A A +A M+
Sbjct: 123 ARPAAAAETGIKVITVPDNRWKRCD--------IKSVGLLPNVLAKQAAKEAGAQEAWMV 174
Query: 246 DKDGYVSETNATNIFLVKK-GRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLS 303
D DG+V+E ++N ++V K G+++T AD + LPGITR T+++L + L +EER +L
Sbjct: 175 D-DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAKELGLEVEERPFTLQ 233
Query: 304 EFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGV 356
E + A E + T + PVV+IDG+ +G+GK GP+ +R+++ Y++ + V
Sbjct: 234 EAYAAREAFITAASSFVFPVVQIDGKQIGNGKPGPIAKRLREAYEEFARLTAV 286
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 144 bits (366), Expect = 3e-41
Identities = 74/255 (29%), Positives = 115/255 (45%), Gaps = 35/255 (13%)
Query: 122 DSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVI--MVKQAIFR 179
D GDGV+E +R +G++F L+ HL RL + ++ G I + ++ +
Sbjct: 1 DRGFAYGDGVFETMRALDGRLFLLDAHLARLERSARRLG--IPEPDLPRLRAALESLLAA 58
Query: 180 TLIRN-----------------VLPEWKPPVY---------DNTHGVNLVTATTRRNSPN 213
I P +Y GV L+T R
Sbjct: 59 NDIDEGRIRLILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPVRLGEQP 118
Query: 214 NLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD 273
L + + H N L N+LAK E + A +A+ LD DG V E A+N+F VK G ++TP D
Sbjct: 119 LL-AGLKHLNYLENVLAKREARDRGADEALFLDTDGRVIEGTASNLFFVKDGELVTPSLD 177
Query: 274 YC-LPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVG 332
L GITR V+EL + ++ER + L + ADE + T ++ + PV ID
Sbjct: 178 RGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAIDDH--- 234
Query: 333 DGKVGPVTQRIQKVY 347
DG GP+T+ ++++
Sbjct: 235 DGPPGPLTRALRELL 249
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 135 bits (343), Expect = 1e-37
Identities = 73/264 (27%), Positives = 119/264 (45%), Gaps = 46/264 (17%)
Query: 128 GDGVWEGLRVYNGK-----VFKLEEHLDRLVKGKQKFG--------------KVI----- 163
G V+EGL+ Y +F+ +E+ +RL + ++ G +++
Sbjct: 12 GQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDAD 71
Query: 164 ---------------VWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTR 208
++ + + V A L GV+ + ++ R
Sbjct: 72 WVPYGGGASLYIRPFIFGTDPQLGVSPA-LEYLFAVFASPVGAYFKGGEKGVSALVSSFR 130
Query: 209 RNSPNN-LDSKIHHNNLLNNILAKIEGNNANAGDAIMLD-KDGYVSETNATNIFLVKKGR 266
R +P +K N ++LA+ E A+ LD GYV+E NIF VK G
Sbjct: 131 RAAPGGPGAAKAG-GNYAASLLAQKEAAEKGYDQALWLDGAHGYVAEVGTMNIFFVKDGE 189
Query: 267 VLTPHADYC-LPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVK 325
++TP D LPGITR +++EL + +EER I+ E + ADEV+ TGT +TPV +
Sbjct: 190 LITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGE 249
Query: 326 IDGR--IVGDGKVGPVTQRIQKVY 347
ID R G+G+VGPVT+++ +
Sbjct: 250 IDYRGKEPGEGEVGPVTKKLYDLL 273
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 127 bits (322), Expect = 5e-35
Identities = 64/236 (27%), Positives = 111/236 (47%), Gaps = 36/236 (15%)
Query: 143 FKLEEHLDRLVKGKQKFG----------KVIVWYMELV--------IMVKQAIFR----- 179
F L+EHL+RL + + K+I EL+ ++ + R
Sbjct: 1 FLLDEHLERLRRSAKALIGLPLSIEDLRKII---QELLEANGPAGSGRLRILVSRGDGGR 57
Query: 180 --TLIRNVLPEW-KPPVYDNTHGVNLVTATTRRNSPNNLDSKI----HHNNLLNNILAKI 232
+ +P ++ L+ R S + + N L N + A
Sbjct: 58 GLSPPEGAIPIIVSLIALASSAPPRLLITVKLRLSSYPVPRPLAGHKTTNYLDNVLAALR 117
Query: 233 EGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADY-CLPGITRATVMELVVKE 291
A DA++LD+DG V+E + +NIF+VK G + TP + LPGITR +++L +
Sbjct: 118 AAERAGFDDALLLDEDGNVTEGSTSNIFIVKGGTLYTPPLESGILPGITRQALLDLAKEL 177
Query: 292 NLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVY 347
+ +EER ++L++ ADE + T ++ +TPV IDGRI G+ GP+T +++++
Sbjct: 178 GIEVEERPLTLADLQEADEAFLTNSLRGVTPVTSIDGRIFGN--PGPITAKLRELL 231
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 124 bits (313), Expect = 5e-33
Identities = 83/277 (29%), Positives = 116/277 (41%), Gaps = 34/277 (12%)
Query: 105 WVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIV 164
W+ E+VP DAKV V + V+EG R Y GK+FKL EH +RL + + I
Sbjct: 12 WMDGELVPWRDAKVHVLTHGLHYASSVFEGERAYGGKIFKLREHSERLRRSAELLDFEIP 71
Query: 165 W---------------------YMELVI-----MVKQAIFRTLIRNVLPEWKPPVY---- 194
+ Y+ V M+ + + I + W+ P Y
Sbjct: 72 YSVAEIDAAKKETLAANGLTDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPE 131
Query: 195 DNTHGVNLVTATTRRNSPNNLDSKIHHNNL-LNNILAKIEGNNANAGDAIMLDKDGYVSE 253
G+ L A RR P S L + ++K DA+MLD GYV+E
Sbjct: 132 AKMKGIRLDIAKWRRPDPETAPSAAKAAGLYMICTISKHAAEAKGYADALMLDYRGYVAE 191
Query: 254 TNATNIFLVKKGRVLTPHADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWT 313
NIF VK G + TP D L GITR TV+EL + + + ER I E E +
Sbjct: 192 ATGANIFFVKDGVIHTPTPDCFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFL 251
Query: 314 TGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKE 350
TGT E+TPV +I G +T+ + Y+
Sbjct: 252 TGTAAEVTPVSEIGEYRF---TPGAITRDLMDDYEAL 285
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 109 bits (276), Expect = 4e-28
Identities = 72/262 (27%), Positives = 110/262 (41%), Gaps = 40/262 (15%)
Query: 116 AKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFG--------------K 161
++SV D +Q GDG + +V NGK+ L+ HL+RL + G +
Sbjct: 8 TQISVSDRGLQYGDGCFTTAKVRNGKIELLDLHLERLQDAAARLGIPLPDWDALREEMAQ 67
Query: 162 VIVWYMELVIMV---------------KQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTAT 206
+ Y V+ V R + + P + G+ L +
Sbjct: 68 LAAGYSLGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPA-HYSAWQQ-QGIRLGVSP 125
Query: 207 TR--RNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKK 264
R RN L + I H N L +L K E N+ A +A++LD DG V E A NIF K
Sbjct: 126 VRLGRNP---LLAGIKHLNRLEQVLIKAELENSEADEALVLDTDGNVVECTAANIFWRKG 182
Query: 265 GRVLTPHADYC-LPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPV 323
+V TP YC + G+ R V+ L+ +EE + L E +ADEV+ T ++ + PV
Sbjct: 183 NQVFTPDLSYCGVAGVMRQHVLALLPALGYEIEEVKAGLEELLSADEVFITNSLMGVVPV 242
Query: 324 VKIDGRIVGDGKVGPVTQRIQK 345
I +T+ +Q
Sbjct: 243 NAIGETSY---PSRTLTRLLQP 261
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 104 bits (263), Expect = 4e-26
Identities = 67/255 (26%), Positives = 108/255 (42%), Gaps = 32/255 (12%)
Query: 118 VSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFG-------KVIVWYMELV 170
+SV D Q GDG + RV +G+V L HL RL ++ ++ +L
Sbjct: 12 LSVSDRSTQYGDGCFTTARVRDGQVSLLSRHLQRLQDACERLAIPLDDWAQLEQEMKQLA 71
Query: 171 IMVKQAIFRTLI-----------------RNVLPEWKPPVYDNTH---GVNLVTATTRRN 210
++ + + +I +L P + + G+ L TR
Sbjct: 72 AELENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALCPTRL- 130
Query: 211 SPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTP 270
N L + I H N L +L + E A +A++LD +G+V E A N+F K G V TP
Sbjct: 131 GRNPLLAGIKHLNRLEQVLIRAELEQTEADEALVLDSEGWVIECCAANLFWRKGGVVYTP 190
Query: 271 HADYC-LPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGR 329
D C + G+ R ++EL+ + + E SL E ADEV+ ++ + PV I
Sbjct: 191 DLDQCGVAGVMRQFILELLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGET 250
Query: 330 IVGDGKVGPVTQRIQ 344
G +T+ +Q
Sbjct: 251 SY---SSGTLTRYLQ 262
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 103 bits (260), Expect = 1e-25
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Query: 226 NNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYC-LPGITRATV 284
NN A E + +A++LD G V+ET +N+F+VK G V TP + L GITR V
Sbjct: 159 NNARALREARSRGFDNALVLDMLGNVAETATSNVFMVKDGVVFTPVPNGTFLNGITRQRV 218
Query: 285 MELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQ 344
+ L+ ++ + + E ++ +F ADEV++TG ++ PV + D R + + GPVT+R +
Sbjct: 219 IALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRFDDRSL---QPGPVTRRAR 275
Query: 345 KVY 347
++Y
Sbjct: 276 ELY 278
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 95.5 bits (238), Expect = 4e-22
Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 44/258 (17%)
Query: 122 DSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFG----------KVIVWYMELVI 171
D +V G GV++ + +G +++L+ HLDR ++ K + I+
Sbjct: 61 DHMVHRGHGVFDTATIRDGHLYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAAS 120
Query: 172 MVKQAIFR--------------------TLIRNVLPEWKPPVYDNTHGVNLVTATTRRNS 211
+ R V+ D GV +VT++
Sbjct: 121 GCRNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIE--DTYAQDRPEGVKVVTSSVPIKP 178
Query: 212 PNNLDSKIHHNNLLNNILAKIE--GNNANAGDAIMLDKDGYVSETNATNI-FLVKKGRVL 268
P + + N L N L+++E A AG I LD++G+V+E N+ FL G ++
Sbjct: 179 P--QFATVKSVNYLPNALSQMEAEERGAFAG--IWLDEEGFVAEGPNMNVAFLTNDGELV 234
Query: 269 TPHADYCLPGITRATVMELV---VKENLV--LEERRISLSEFHTADEVWTTGTMGEITPV 323
P D L G T V+EL V + +++R+IS+ E ADE+ G+ + P+
Sbjct: 235 LPPFDKILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPI 294
Query: 324 VKIDGRIVGDGKVGPVTQ 341
V DG+ +GDGKVGP+T
Sbjct: 295 VSWDGQPIGDGKVGPITL 312
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 93.2 bits (231), Expect = 1e-21
Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 38/267 (14%)
Query: 125 VQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQK------FGKVIVWYMELVIMVKQ--- 175
+Q GDGV+E +R+Y G L+ H+ RL + ++ F K EL+ ++ +
Sbjct: 30 LQFGDGVYEVIRLYKGNFHLLDPHITRLYRSMEEIELTLPFSKA-----ELITLLYKLIE 84
Query: 176 --------AIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNS------------PNN- 214
I+ + R V YD + R + P+
Sbjct: 85 NNNFHEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEYGVRAISEPDTR 144
Query: 215 -LDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD 273
L I NLL NILA + +A+ + ++G V+E + +N FL+K G + T A+
Sbjct: 145 WLRCDIKSLNLLPNILAATKAERKGCKEALFV-RNGTVTEGSHSNFFLIKNGTLYTHPAN 203
Query: 274 Y-CLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVG 332
+ L GI R V+ L + ++E S+ + + ADE + TGT EI P+ +DG +
Sbjct: 204 HLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIEILPMTHLDGTAIQ 263
Query: 333 DGKVGPVTQRIQKVYKKETEESGVPIP 359
DG+VGP+T+ +Q+ + + +S +
Sbjct: 264 DGQVGPITKMLQRSFSQSLLQSNMSSS 290
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 78.3 bits (194), Expect = 3e-16
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 229 LAKIEGNNANAGDAIMLD-KDG-YVSETNATNIFLVKK-GRVLTPHADYCLPGITRATVM 285
LA+ E + LD + Y+ E N F + K G V P + LPGITR +++
Sbjct: 206 LAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGSILPGITRDSLL 265
Query: 286 ELVVKENLVLEERRISLSEFHTA------DEVWTTGTMGEITPVVKI---DGRIV-GDGK 335
+L L +EER +S+ E+ E + GT ITP+ I D V GDG+
Sbjct: 266 QLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKDKEFVIGDGE 325
Query: 336 VGPVTQRIQKVY 347
VGPVTQ++
Sbjct: 326 VGPVTQKLYDEL 337
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 73.6 bits (181), Expect = 9e-15
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 223 NLLNNILAKIEGNNANAGDAIMLD--KDGYVSETNATNIFLV-KKGR-VLTPHADYCLPG 278
N ++LA+ + + LD + Y+ E A N F + G V P + LPG
Sbjct: 159 NYAASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPG 218
Query: 279 ITRATVMELVVKENLVLEERRISLSEFHTADE----VWTTGTMGEITPV--VKIDGR--I 330
ITR ++++L + +EERRI + E E V+ GT ITPV ++ G+ +
Sbjct: 219 ITRDSLLQLAKDLGMEVEERRIDIDELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVV 278
Query: 331 VGDGKVGPVTQRIQK 345
G+ G VT+ +
Sbjct: 279 FASGQPGEVTKALYD 293
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 64.2 bits (156), Expect = 2e-11
Identities = 68/256 (26%), Positives = 108/256 (42%), Gaps = 41/256 (16%)
Query: 109 EIVPRDDAKVSVFDSIVQGGDGVWEGLRVY---NGKV--FKLEEHLDRLVKGKQKFGKVI 163
+IVP D +S I+ G G++EGL+ Y +G++ F+ +++ R+ G +
Sbjct: 50 KIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTP 109
Query: 164 VWYMELVIMVKQAIFRT------------LIRNVL------------PEWKPPVY----D 195
+ V VKQ + IR +L PE+ +Y
Sbjct: 110 PSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVG 169
Query: 196 NTH----GVNL-VTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLD--KD 248
N H G+NL V RR N + + IE ++ D + LD
Sbjct: 170 NYHKASSGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATG 229
Query: 249 GYVSETNATNIFLVKKGRVLTPH-ADYCLPGITRATVMELVVKENLVLEERRISLSEFHT 307
+ E +A NIF++K V TP + LPG+TR ++ EL +EER +S+ E
Sbjct: 230 KNIEELSACNIFILKGNIVSTPPTSGTILPGVTRKSISELARDIGYQVEERDVSVDELLE 289
Query: 308 ADEVWTTGTMGEITPV 323
A+EV+ TGT + V
Sbjct: 290 AEEVFCTGTAVVVKAV 305
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 62.7 bits (153), Expect = 4e-11
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 239 AGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADY-CLPGITRATVMELVVKENLVLEE 297
A D I DGYV E + + + R+LTP Y LPG T+A + E+ ++ E
Sbjct: 178 ADDVIFTSTDGYVLEGPTSTVVIATDDRLLTPPPWYGILPGTTQAALFEVAREKGWDCEY 237
Query: 298 RRISLSEFHTADEVWTTGTMGEITPVVKIDGR 329
R + ++ AD VW ++ V +DGR
Sbjct: 238 RALRPADLFAADGVWLVSSVRLAARVHTLDGR 269
Score = 38.8 bits (91), Expect = 0.003
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 118 VSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRL 152
+ D GDGV+E L V +G+ LE HL+RL
Sbjct: 28 LHADDLAAVRGDGVFETLLVRDGRPCNLEAHLERL 62
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 62.2 bits (151), Expect = 9e-11
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 250 YVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTA 308
Y+ E ++ NIF+VK + TP LPGITR +++++ + +EER +++ E A
Sbjct: 282 YLEEVSSCNIFIVKDNVISTPAIKGTILPGITRKSIIDVARSQGFQVEERNVTVDELLEA 341
Query: 309 DEVWTTGTMGEITPVVKID--GRIV--GDGKVGPVTQRIQKV 346
DEV+ TGT ++PV I G+ V G+G G V+Q++ V
Sbjct: 342 DEVFCTGTAVVVSPVGSITYKGKRVSYGEGGFGTVSQQLYTV 383
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 56.3 bits (135), Expect = 9e-09
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 12/115 (10%)
Query: 241 DAIMLDKD--GYVSETNATNIFLVKKGRVLTPH-ADYCLPGITRATVMELVVKENLVLEE 297
D + LD D + E +A NIFLVK ++TP + L GITR +++E+ + +EE
Sbjct: 253 DVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATSGTILGGITRKSIIEIALDLGYKVEE 312
Query: 298 RRISLSEFHTADEVWTTGTMGEITPVVKIDGR------IVGDGKVGPVTQRIQKV 346
RR+ + E A+EV+ TGT + V I + VGDG VTQ+++ +
Sbjct: 313 RRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTEYKVGDGI---VTQQLRSI 364
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 54.0 bits (129), Expect = 5e-08
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 241 DAIMLD--KDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEE 297
D + LD K Y+ E ++ N+F+VK + TP + L GITR +VME+ + + E
Sbjct: 257 DVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATNGTILEGITRKSVMEIASDQGYQVVE 316
Query: 298 RRISLSEFHTADEVWTTGTMGEITPVVKI---DGRIVGDGKVGPVTQRIQKV 346
+ + + E ADEV+ TGT + PV I + R+ V Q+++ V
Sbjct: 317 KAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKRVEYKTGDESVCQKLRSV 368
>gnl|CDD|235934 PRK07101, PRK07101, hypothetical protein; Provisional.
Length = 187
Score = 43.0 bits (102), Expect = 7e-05
Identities = 34/189 (17%), Positives = 74/189 (39%), Gaps = 27/189 (14%)
Query: 133 EGLRVYNGKVFKLEEHLDRLVKG-KQKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKP 191
E + + +G++ L H R + + +GK + + +I + L+R +
Sbjct: 7 ETIAIEDGEIQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTELQEGLVRCRI----- 61
Query: 192 PVYDNTHGVNLVTATTRRN-------SPNNLD--SKIHHNNLLNNILAKIEGNNANAGDA 242
Y+ RR +++D K + LN + A+ D
Sbjct: 62 -DYNAEIYQVQYFPYQRRPIRSFQPVYCDDIDYSLKYTDRSALNELFAQKG-----ECDE 115
Query: 243 IMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATVMELVVKENLVLEERRISL 302
I++ K+G V++T+ N+ + TP L G RA ++ + ++E+ I++
Sbjct: 116 IIIIKNGLVTDTSIGNLAFFDGKQWFTP-KKPLLKGTQRARLL-----DEGKIKEKDITV 169
Query: 303 SEFHTADEV 311
+ +E+
Sbjct: 170 EDLLQYEEI 178
>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional.
Length = 209
Score = 40.0 bits (94), Expect = 7e-04
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 237 ANAGDAIMLDKDGYVSETNATNIFL-VKKGRVLTPHADY-CLPGITRATVMELVVKENLV 294
A A + I+L++ G V E TN+FL G + TP LPG+ RA EL+ +
Sbjct: 123 AEADEVILLNERGEVCEGTITNVFLDRGGGMLTTPPLSCGLLPGVLRA---ELL--DAGR 177
Query: 295 LEERRISLSEFHTADEVW 312
E +++ + +A +W
Sbjct: 178 AREAVLTVDDLKSARAIW 195
>gnl|CDD|236438 PRK09266, PRK09266, hypothetical protein; Provisional.
Length = 266
Score = 39.2 bits (92), Expect = 0.002
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 241 DAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATVMELVVK--ENLVLEER 298
DA+ +D DG VSE N+ G V+ P A LPG+T M L+ + E L + +R
Sbjct: 155 DALFVDPDGRVSEGATWNLGFWDGGAVVWPQAP-ALPGVT----MALLQRGLERLGIPQR 209
Query: 299 R--ISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEES 354
++L++ + V ID + D + + +++ Y+ E ++
Sbjct: 210 TRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSH--ALLELLRRAYEAEPWQA 265
>gnl|CDD|239955 cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains in association with the ABC transporter OpuCA.
OpuCA is the ATP binding component of a bacterial solute
transporter that serves a protective role to cells
growing in a hyperosmolar environment but the function
of the CBS domains in OpuCA remains unknown. In the
related ABC transporter, OpuA, the tandem CBS domains
have been shown to function as sensors for ionic
strength, whereby they control the transport activity
through an electronic switching mechanism. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. They are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
CBS is a small domain originally identified in
cystathionine beta-synthase and subsequently found in a
wide range of different proteins. CBS domains usually
come in tandem repeats, which associate to form a
so-called Bateman domain or a CBS pair which is
reflected in this model. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains. It has been proposed that the
CBS domain may play a regulatory role, although its
exact function is unknown.
Length = 106
Score = 28.9 bits (65), Expect = 1.3
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 36/118 (30%)
Query: 229 LAKIEGNNANAGDAIMLDKD----GYVSETNATNIFLVKKGRVLTPHADYCLPGITRATV 284
L ++ ++ A ++D D G+V+ A G HA P + TV
Sbjct: 16 LGLMDDSDLRA--LTVVDADGQPLGFVTRREAAR----ASGGCCGDHA---EP--FKVTV 64
Query: 285 MELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQR 342
V ++L RI LS D W P V DGR VG+ VTQR
Sbjct: 65 S---VDDDL-----RIVLSRMFAHDMSWL--------PCVDEDGRYVGE-----VTQR 101
>gnl|CDD|218945 pfam06224, DUF1006, Protein of unknown function (DUF1006). Family
of conserved bacterial proteins with unknown function.
This family probably contains a C-terminal
helix-turn-helix motif.
Length = 346
Score = 30.3 bits (69), Expect = 1.7
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 292 NLVLEERRIS-LSEFHTADEVWTTGTMGEITPVVKIDGRIVG 332
L+L R L +FH EV+T G+ V +DGR+VG
Sbjct: 270 PLLLGRARRERLFDFHYRLEVYTPA--GKRVLPVLVDGRVVG 309
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 30.4 bits (69), Expect = 1.7
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 305 FHTADEVWTT--GTMGEITPVVKI-----DGRIVGDGKVGPVTQRI 343
F T+++ + GT+G+ P ++ DGR + G++G + RI
Sbjct: 313 FATSED-ALSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRI 357
>gnl|CDD|236747 PRK10736, PRK10736, hypothetical protein; Provisional.
Length = 374
Score = 29.9 bits (68), Expect = 2.4
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 11/56 (19%)
Query: 62 DLLEQ---SLPFYNMLRRNVRKTSSLLKSPLPEPDLPVPANKNLLAWVGDEIVPRD 114
D+LE L + N S E LP P LLA VGDE+ P D
Sbjct: 278 DILENLQFGLHWLPDAPEN-----SFYSPDQEEVALPFP---ELLANVGDEVTPVD 325
>gnl|CDD|233677 TIGR01995, PTS-II-ABC-beta, PTS system, beta-glucoside-specific
IIABC component. This model represents a family of PTS
enzyme II proteins in which all three domains are found
in the same polypeptide chain and which appear to have a
broad specificity for beta-glucosides including salicin
(beta-D-glucose-1-salicylate) and arbutin
(Hydroquinone-O-beta-D-glucopyranoside). These are
distinct from the closely related sucrose-specific and
trehalose-specific PTS transporters.
Length = 610
Score = 29.2 bits (66), Expect = 3.4
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 286 ELVVKENL--VLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVG--DGKV 336
L E+L + + L+E DEV+++G MG+ ++ +G +V DG V
Sbjct: 458 ALSKDESLYAPVAGEMLPLNE--VPDEVFSSGAMGKGIAILPTEGEVVAPVDGTV 510
>gnl|CDD|216521 pfam01477, PLAT, PLAT/LH2 domain. This domain is found in a
variety of membrane or lipid associated proteins. It is
called the PLAT (Polycystin-1, Lipoxygenase,
Alpha-Toxin) domain or LH2 (Lipoxygenase homology)
domain. The known structure of pancreatic lipase shows
this domain binds to procolipase pfam01114, which
mediates membrane association. So it appears possible
that this domain mediates membrane attachment via other
protein binding partners. The structure of this domain
is known for many members of the family and is composed
of a beta sandwich.
Length = 115
Score = 27.7 bits (62), Expect = 4.0
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 226 NNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVK 263
N+ + G + +G+ +L+ + + +T+ F
Sbjct: 17 ANVYISLYGTHGKSGEYPLLEPELKPDDRGSTDSFTFD 54
>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18). Rab18 subfamily.
Mammalian Rab18 is implicated in endocytic transport and
is expressed most highly in polarized epithelial cells.
However, trypanosomal Rab, TbRAB18, is upregulated in
the BSF (Blood Stream Form) stage and localized
predominantly to elements of the Golgi complex. In human
and mouse cells, Rab18 has been identified in lipid
droplets, organelles that store neutral lipids. GTPase
activating proteins (GAPs) interact with GTP-bound Rab
and accelerate the hydrolysis of GTP to GDP. Guanine
nucleotide exchange factors (GEFs) interact with
GDP-bound Rabs to promote the formation of the GTP-bound
state. Rabs are further regulated by guanine nucleotide
dissociation inhibitors (GDIs), which facilitate Rab
recycling by masking C-terminal lipid binding and
promoting cytosolic localization. Most Rab GTPases
contain a lipid modification site at the C-terminus,
with sequence motifs CC, CXC, or CCX. Lipid binding is
essential for membrane attachment, a key feature of most
Rab proteins. Due to the presence of truncated sequences
in this CD, the lipid modification site is not available
for annotation.
Length = 161
Score = 28.0 bits (63), Expect = 4.6
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 175 QAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSPNNLD 216
Q FRTL Y GV LV TRR++ +NLD
Sbjct: 59 QERFRTLT--------SSYYRGAQGVILVYDVTRRDTFDNLD 92
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 29.0 bits (65), Expect = 5.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 70 FYNMLRRNVRKTSSLLKSPL 89
FYN R +R+ S+ KSP+
Sbjct: 1117 FYNSANREIRRIKSVAKSPV 1136
>gnl|CDD|227629 COG5317, COG5317, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 175
Score = 27.9 bits (62), Expect = 5.8
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 57 PMSLYDLLEQSLPFYNMLRRNVRKT--SSLLKSPLPEPDLPVPANKNLL 103
P S DL+E+SL +RR R+ S +P PV A +LL
Sbjct: 120 PESFRDLVERSLRLQARVRRLDREIYGESEATDEVPRGRNPVQAQIDLL 168
>gnl|CDD|115788 pfam07157, DNA_circ_N, DNA circulation protein N-terminus. This
family represents the N-terminus (approximately 100
residues) of a number of phage DNA circulation proteins.
Length = 93
Score = 26.9 bits (60), Expect = 6.7
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 298 RRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDG 334
RR+ L E+ D +T +G+ I +VGD
Sbjct: 26 RRLVLHEYPLRDTGYTE-DLGKKLRRYTISALVVGDD 61
>gnl|CDD|234468 TIGR04095, dnd_restrict_1, DNA phosphorothioation system
restriction enzyme. The DNA phosphorothioate
modification system dnd (DNA instability during
electrophoresis) recently has been shown to provide a
modification essential to a restriction system. This
protein family was detected by Partial Phylogenetic
Profiling as linked to dnd, and its members usually are
clustered with the dndABCDE genes.
Length = 451
Score = 28.5 bits (64), Expect = 7.3
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 260 FLVKKGRVLTPHADYCLPGITRATVMELVV 289
F+ ++GRVL PH PG RAT+ + +V
Sbjct: 373 FIQRRGRVLRPH-----PGKNRATIYDFIV 397
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 28.0 bits (63), Expect = 7.8
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 323 VVKI-DGRIVGDGKVGPVTQR-IQKVYKKETEESG 355
++ + GRIV DG +T + ++Y E E
Sbjct: 218 IIGLKAGRIVFDGPASELTDEALDEIYGNEISEDI 252
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,751,567
Number of extensions: 1820937
Number of successful extensions: 1712
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1663
Number of HSP's successfully gapped: 66
Length of query: 361
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 263
Effective length of database: 6,590,910
Effective search space: 1733409330
Effective search space used: 1733409330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)