RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 046821
(361 letters)
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 292 bits (749), Expect = 2e-98
Identities = 60/279 (21%), Positives = 111/279 (39%), Gaps = 33/279 (11%)
Query: 98 ANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQ 157
+ ++L W + D+ + V+E LR Y+ F +H RL +
Sbjct: 9 HHHHVLIWWRGKFRRADEISLDFSLFEKSLQGAVYETLRTYSRAPFAAYKHYTRLKRSAD 68
Query: 158 KFGKVIVWYMELVIMVKQ--AIFRTLIRNVLPE--------------------WKPPVYD 195
F + L + + + + E P +
Sbjct: 69 FFN------LPLSLSFDEFTKVLKAGADEFKQEVRIKVYLFPDSGEVLFVFSPLNIPDLE 122
Query: 196 NTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETN 255
GV + + RR + + + +LA+ E + D I+L +G V E +
Sbjct: 123 T--GVEVKISNVRRIPDLSTPPALKITGRTDIVLARREI--VDCYDVILLGLNGQVCEGS 178
Query: 256 ATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTT 314
+N+FLVK+G+++TP D L GITR V++L + +EER + + E ADE++ T
Sbjct: 179 FSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEMFLT 238
Query: 315 GTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEE 353
T + PV +++ + + GPVT + + ++
Sbjct: 239 HTSAGVVPVRRLNEHSFFEEEPGPVTATLMENFEPFVLN 277
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 277 bits (711), Expect = 2e-92
Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 35/287 (12%)
Query: 97 PANKNLLAWVGDEIVP----RDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRL 152
+ + ++ R A++SV D + GDG++E L V G LE HL RL
Sbjct: 9 HHSSGENLYFQGHMLDWVDGRPAAELSVRDRGLAYGDGLFETLAVRAGTPRLLERHLARL 68
Query: 153 VKGKQKFG------KVIVWYMELVIMVKQAIFRTLI------RNVLP------------E 188
+G ++ + + + + + ++ R P
Sbjct: 69 EEGCRRLAIPLDTAALRQELLAFCAALGDGVAKLIVTRGEGLRGYAPPAEASPRRILSGS 128
Query: 189 WKPPVYDN--THGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLD 246
+P + GV L TR L + + H N L +LA+ E ++A + +MLD
Sbjct: 129 PRPAYPERHWQQGVRLFACRTRLA-EQPLLAGLKHLNRLEQVLARAEWSDAGHAEGLMLD 187
Query: 247 KDGYVSETNATNIFLVKKGRVLTPHADYC-LPGITRATVMELVVKENLVLEERRISLSEF 305
V E +N+ LV G ++ P C + G+ RA ++E + L R +S++E
Sbjct: 188 VHERVVEGVFSNLLLVLDGTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAEL 247
Query: 306 HTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETE 352
TADEV+ + I PV +D + VG +T+++Q + + +
Sbjct: 248 ATADEVFLCNSQFGIWPVRALDEHVWP---VGELTRKLQDQLRDDLD 291
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 269 bits (690), Expect = 2e-89
Identities = 79/281 (28%), Positives = 130/281 (46%), Gaps = 42/281 (14%)
Query: 104 AWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVI 163
D+IV ++ K+ D Q GDGV+E ++VYNG++F + EH+DRL +K I
Sbjct: 3 TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITI 62
Query: 164 VWYMELVIMVKQAIFRTLIRNVLPE---------------------------------WK 190
+ + Q + + +N L
Sbjct: 63 PYTKD---KFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENP 119
Query: 191 PPVYDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGY 250
P+ + GV R L I NLL +LAK E + +AI L ++
Sbjct: 120 RPLENLEKGVKATFVEDIRW----LRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNT 174
Query: 251 VSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTAD 309
V+E +++N+F +K G + T A+ L GITR V+ + N+ ++E + E D
Sbjct: 175 VTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMD 234
Query: 310 EVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKE 350
E++ T T EITPV++IDG+++ DGKVG T+++QK ++ +
Sbjct: 235 ELFVTSTTSEITPVIEIDGKLIRDGKVGEWTRKLQKQFETK 275
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 263 bits (674), Expect = 3e-87
Identities = 64/263 (24%), Positives = 99/263 (37%), Gaps = 33/263 (12%)
Query: 113 RDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIM 172
++V D Q GDG + RV +GKV L H+ RL Q+ ++ +L
Sbjct: 7 HKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDACQRLMISCDFWPQLEQE 66
Query: 173 VKQA------------IFR---------------TLIRNVLPEWKPPVYDN--THGVNLV 203
+K I R T I + P YD G+ L
Sbjct: 67 MKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRI--LSVTAYPAHYDRLRNEGITLA 124
Query: 204 TATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVK 263
+ R N + I H N L +L + NA +A++LD +G+V+E A N+F K
Sbjct: 125 LSPVRLGR-NPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLDSEGWVTECCAANLFWRK 183
Query: 264 KGRVLTPHADYC-LPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITP 322
V TP D + GI R + L+ + + L E + SL E ADE+ + + P
Sbjct: 184 GNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMP 243
Query: 323 VVKIDGRIVGDGKVGPVTQRIQK 345
V + + +
Sbjct: 244 VCACGDVSFSSATLYEYLAPLCE 266
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 261 bits (670), Expect = 1e-86
Identities = 49/278 (17%), Positives = 109/278 (39%), Gaps = 43/278 (15%)
Query: 103 LAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKV 162
+ ++ P D + G+G++E +RV + K H +RL ++ G
Sbjct: 6 VIEDKGDMTP-----SFGIDDRIFLGEGLFETIRVNSSKPSFAYMHWERLGNSARQLGIP 60
Query: 163 IVWYMELVIMVKQAIFRTLIRN-----------------------------VLPEWKPPV 193
+ + + + + ++ + + +
Sbjct: 61 FEISFD---DWFEHLIQKIQKDNLYHGGIKAILSGGPASRGLAERGQVSQLIFQTFNYSI 117
Query: 194 YDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSE 253
+ V L++ R+ N L ++ N L I+A+ + A DA+ + + +V+E
Sbjct: 118 QKH--PVRLISINWLRDKANPL-YQLKSVNYLEAIIAQRQAIAVGADDALFFNTENHVTE 174
Query: 254 TNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVW 312
T N+FL++ + TP + LPGITRA ++ + + ++E ++ AD V+
Sbjct: 175 TTCANLFLIENNILYTPRVEDGILPGITRARLISHCQQHKMSVQEISLTKKRIEDADAVF 234
Query: 313 TTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKE 350
T ++ I V+ +D I P+ ++ + ++
Sbjct: 235 LTNSLQGIRRVLSLDNIIFEVN--HPIIDKLIFLLNQD 270
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 236 bits (605), Expect = 5e-76
Identities = 84/307 (27%), Positives = 140/307 (45%), Gaps = 42/307 (13%)
Query: 85 LKSPLPEPDLPVPANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGK--- 141
L++ P A+++ W+ +++ DAK+ V + G GV+EG+R Y
Sbjct: 12 LEAQTQGPGSMSMADRDGKIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGG 71
Query: 142 --VFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNVLPE----------- 188
+F+L+EH RL+ + F + + E + A + N L
Sbjct: 72 TAIFRLKEHTKRLLNSAKIFQMDVPFDQETLE---AAQRDVVRENKLESCYLRPIIWIGS 128
Query: 189 ------------------WKPPVY----DNTHGVNLVTATTRRNSPNNLDSKIHHN-NLL 225
W Y G+ + T++ R+ N + + +
Sbjct: 129 EKLGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYV 188
Query: 226 NNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATVM 285
N+ILA E +A++LD DGYVSE + N FLV +G++ TP CL GITR TV+
Sbjct: 189 NSILANQEATADGYDEALLLDVDGYVSEGSGENFFLVNRGKLYTPDLASCLDGITRDTVI 248
Query: 286 ELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQK 345
L + + + E+RI+ E +TADE + TGT E+TP+ ++D R +G G GP+T+++Q
Sbjct: 249 TLAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIRELDNRTIGGGARGPITEKLQS 308
Query: 346 VYKKETE 352
+
Sbjct: 309 AFFDVVN 315
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 235 bits (602), Expect = 6e-76
Identities = 82/294 (27%), Positives = 132/294 (44%), Gaps = 42/294 (14%)
Query: 98 ANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGK----VFKLEEHLDRLV 153
K L W+ VP+++AK SV + G V+EG+R Y +F+L+EH+ R
Sbjct: 2 QIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFY 61
Query: 154 KGKQKFGKVIVWYMELVIMVKQAIFRTLIRNVLPE------------------------- 188
+ I + E +++AI + RN
Sbjct: 62 NSAKVLRMEIPFAPE---ELEEAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAE 118
Query: 189 -----WKPPVY----DNTHGVNLVTATTRRNSPNNLDSKIHHN-NLLNNILAKIEGNNAN 238
W+ Y G L+T++ R N + K N +N+ LAK+E A
Sbjct: 119 VMVAAWEWGAYLGEEAVRKGARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAG 178
Query: 239 AGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATVMELVVKENLVLEER 298
A +A++LD++GYV+E + N+F V+ G + L GITR +V+ + ++
Sbjct: 179 ADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYEVQVV 238
Query: 299 RISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETE 352
R + + + ADEV+ TGT E+TPV ID R +G G GPV R+++VY +
Sbjct: 239 RATRDQLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYLEAVT 292
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 229 bits (587), Expect = 1e-73
Identities = 47/308 (15%), Positives = 91/308 (29%), Gaps = 54/308 (17%)
Query: 91 EPDLPV-PANKNLLAWVGDEIVPRDDAK---VSVFDSIVQGGDGVWEGLRVYNGKVFKLE 146
EP + P L+ + + + V D+ + GDG++E L + +G +
Sbjct: 5 EPQIKSAPTPVILIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIRDGHACNVR 64
Query: 147 EHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRN---------------------- 184
H +R G + + I
Sbjct: 65 RHGERFKASAALLGLPEPILEDWEKATQMGIESWYSHPNAGEASCTWTLSRGRSSTGLAS 124
Query: 185 ----VLPEWKPPVYDNTHGVNLVTATT----------------------RRNSPNNLDSK 218
+ P + HGV+++T++ R L
Sbjct: 125 GWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVG 184
Query: 219 IHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLP 277
N+ A + D I D V E + + K ++ TP LP
Sbjct: 185 AKTLAYAANMAALRYAKSNGFDDVIFTD-GDRVLEGATSTVVSFKGDKIRTPSPGGDILP 243
Query: 278 GITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVG 337
G T+A + ++ +E+ +S+ + AD VW ++ V ++DG +
Sbjct: 244 GTTQAALFAHATEKGWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRLDGHKLRKPDNE 303
Query: 338 PVTQRIQK 345
+ +
Sbjct: 304 KEIKALIT 311
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 229 bits (586), Expect = 2e-73
Identities = 79/296 (26%), Positives = 130/296 (43%), Gaps = 43/296 (14%)
Query: 97 PANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGK----VFKLEEHLDRL 152
K W E+V +DAKV V + G V+EG+R Y+ VF+ EH+ RL
Sbjct: 2 TTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRL 61
Query: 153 VKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNVLPE------------------------ 188
+ + + ++ + +A + +N L
Sbjct: 62 HDSAKIYRFPVSQSID---ELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYST 118
Query: 189 ------WKPPVY----DNTHGVNLVTATTRRNSPNNLDSKIHHN-NLLNNILAKIEGNNA 237
+ Y G++ + ++ R +PN + + N L+++L E
Sbjct: 119 DVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRH 178
Query: 238 NAGDAIMLDKDGYVSETNATNIFLVKKGRVLTP-HADYCLPGITRATVMELVVKENLVLE 296
+ I LD +GY+SE N+F VK G + TP LPGITR +++L + + +
Sbjct: 179 GYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVR 238
Query: 297 ERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETE 352
E+ +S + ADEV+ +GT EITPV +DG VG+G+ GPVT+RIQ+ +
Sbjct: 239 EQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFT 294
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 225 bits (576), Expect = 8e-73
Identities = 45/259 (17%), Positives = 81/259 (31%), Gaps = 33/259 (12%)
Query: 110 IVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMEL 169
++ +++ ++ + G V+ LR G+ LEEHL RL + G
Sbjct: 3 LLNGTPLALALPEAFLYHGASVFTTLRAEGGRPLWLEEHLARLRRHALALGLSYPGDEAF 62
Query: 170 VIMVKQA-------------IFR-----TLIRNVLPEWKPPVYDNTHGVNLVTATTRRNS 211
+ ++ +Y GV + R +
Sbjct: 63 LEDLEALLRAFPKAPCLRLRFTVGEGVRLSEARPYAPLPLSLYRE--GVRVRLTGYRVHP 120
Query: 212 PNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPH 271
++ N L LA E A + ++LD G+V + + T+ L ++G +
Sbjct: 121 DL---ARYKTGNYLPYRLALEEARKEGAFEGLLLDAFGHVVDGSRTSPLLFREGTLYLLE 177
Query: 272 ADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIV 331
L GITR V E L +E + G+ + PV
Sbjct: 178 G--GLEGITREKVAEAARGLGLRVERGLFRPEGL--RGHLLLAGSGVGLLPVRPPPPE-- 231
Query: 332 GDGKVGPVTQRIQKVYKKE 350
+ P+ +R E
Sbjct: 232 ----LLPLIERFLPACYTE 246
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 166 bits (422), Expect = 3e-50
Identities = 44/229 (19%), Positives = 77/229 (33%), Gaps = 28/229 (12%)
Query: 116 AKVSVFDSIVQGGDGVWEGLRVYNGKVF-KLEEHLDRLVKGKQKFGKVIVWYMELVIMVK 174
S + E +R G F + + HL RL + G + + V
Sbjct: 3 PAQSPLRDGDTADFELIETMRWQPGTSFLRFDRHLARLYGSAAELG--FACDPQRIAEVL 60
Query: 175 QAIFRTL-----IRNVL----------PEWKPPVYDNTHGVNLVTATTRRNSPNNLDSKI 219
R L ++P D L A TR +S N L +
Sbjct: 61 SDALDGARTAMRTRLALARNGDATASAQPYEPLAADK--VWILRLARTRLDSQNTL-LRH 117
Query: 220 HHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFL-VKKGRVLTPHAD-YCLP 277
+ A+ E A + ++ ++ G + E TN+F G + TP D LP
Sbjct: 118 KTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLP 177
Query: 278 GITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKI 326
G+ RA +++ EE S + +A ++ ++ + P +
Sbjct: 178 GVLRAELLDE-----GRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 221
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for
structural genomics, protein structure initiative,
PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Length = 194
Score = 103 bits (259), Expect = 2e-26
Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 30/199 (15%)
Query: 133 EGLRVYNGKVFKLEEHLDRLVKGKQKFG---KVIVWYMELVI---MVKQAIFRTLIR--- 183
E + + G+ + H R K KF K+ + + +I LIR
Sbjct: 9 ETILIEQGQAKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHTALFTHREGLIRCRI 68
Query: 184 -----NVLPEWKPPVYDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNAN 238
+ + + P V + K LLNN+L +
Sbjct: 69 DYNHHDYVLQCFPYQQKVYRTFKPVFC-----DHIDYSLKFSDRTLLNNLLKQ-----KE 118
Query: 239 AGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATVMELVVKENLVLEER 298
D IM+ + G V++ + N+ + + +TP L G RA ++ E + R
Sbjct: 119 ECDEIMIIRQGKVTDCSIGNLIFRQNNQWITP-DKPLLEGTQRAKLL-----EQKKIIAR 172
Query: 299 RISLSEFHTADEVWTTGTM 317
I + +E+ M
Sbjct: 173 EIFFEDLAQYEEIRLINAM 191
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 74.2 bits (183), Expect = 6e-15
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 250 YVSETNATNIFLVKK----GRVLTPHADYC-LPGITRATVMELVVKENLVLEERRISLSE 304
YV E N+F V R++TP LPGITR ++++L +EER+I + E
Sbjct: 241 YVEEMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDE 300
Query: 305 FHTA------DEVWTTGTMGEITPVVKIDGR----IVGDGKVGPVTQRIQK 345
+ EV+ GT ITPV + + DG+ G +T ++
Sbjct: 301 WQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFTIADGQPGEITMALRD 351
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 63.8 bits (156), Expect = 2e-11
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 245 LD-KDGYVSETNATNIFLVKK-----GRVLTPHADYC-LPGITRATVMELVVKENLVL-- 295
L +D ++E N+FL + TP D LPG+TR +++L +
Sbjct: 248 LYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDL-AHQWGEFKV 306
Query: 296 EERRISLSEFHTA------DEVWTTGTMGEITPVVKI---DGRI-VGDGKVGP-VTQRIQ 344
ER +++ + TA E++ +GT + PV I I + + GP + RI
Sbjct: 307 SERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRIL 366
Query: 345 K 345
Sbjct: 367 S 367
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 62.6 bits (153), Expect = 4e-11
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 245 LD-KDGYVSETNATNIFLVKKG-----RVLTPHADYC-LPGITRATVMELVVKE-NLVLE 296
L D ++E NIF+ ++TP + LPG+ R +++++ +
Sbjct: 228 LYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVV 287
Query: 297 ERRISLSEFHTA------DEVWTTGTMGEITPVVKI---DGRI-VGDGKVGP-VTQRIQK 345
ER I++ + A EV+ +GT ++ PV +I D + + + GP + R QK
Sbjct: 288 ERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILRFQK 347
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 2e-08
Identities = 69/417 (16%), Positives = 124/417 (29%), Gaps = 141/417 (33%)
Query: 1 ATLRSLC------E-DLDIP----FQATMLRWE---AGPKPIDG------------LWAK 34
+ R L E L +P F A+ L+ + P+P +G L K
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 35 WWYESVHKSTGFTSAREYPMPFPMSLYDLLEQSLPFY--NMLRRN-VRKTSSLLKSPLPE 91
+ G+ S+ P +L L + L N + +L L E
Sbjct: 64 F--------LGYVSSLVEPSKVG-QFDQVLNLCLTEFENCYLEGNDIH---ALAAKLLQE 111
Query: 92 PDLPVPANKNLL-------AWVGDEI-----------VPRDDAKV-SVFDSIVQGGDGV- 131
D + K L+ V +A++ ++F GG G
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-----GGQGNT 166
Query: 132 ---WEGLR----VYNGKVFKL----EEHLDRLVKGKQKFGK-------VIVW-------- 165
+E LR Y+ V L E L L++ K ++ W
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 166 ---YMELV------IMVKQAIFRTLIRNVLPEWKPP-VYDNTHGV-----NLVTAT---- 206
Y+ + I V Q + +L + P + G LVTA
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLL-GFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 207 --TRRNSPNNLDSKIHHNNLLNNILAKI--EGNNA---NAGDAIMLDKDGYVSETNATNI 259
+ + ++ I +L I A + +L+ +E + +
Sbjct: 286 TDSWESFFVSVRKAIT-------VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 260 FLVKKGRVLTPHADYCLPGITRATVMELVVKENLVL-EERRISLSEFHTADEVWTTG 315
+ +T+ V + V K N L +++ +S + A + +G
Sbjct: 339 LSIS--------------NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Score = 47.4 bits (112), Expect = 5e-06
Identities = 40/201 (19%), Positives = 66/201 (32%), Gaps = 85/201 (42%)
Query: 56 FPMSLYDL------------LEQS-LPFYNMLRRNVRKTSSLLKSPLPEP---DLPVPAN 99
P SLY L L+QS +PF R ++ ++ L P+ P L VPA+
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPF---SERKLKFSNRFL--PVASPFHSHLLVPAS 436
Query: 100 KNLLAWVGDEIV--PRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQ 157
+ + V D ++ V+D+ G D LRV +G + +R+V
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDT-FDGSD-----LRVLSGSI------SERIV---- 480
Query: 158 KFGKVIVWYMELVIMVKQAIFRTLIRNVLPEW-KPPVYDNTH------------------ 198
I R ++ W + TH
Sbjct: 481 -----------------DCIIRLPVK-----WETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 199 -----GVNLVTATTRRNSPNN 214
GV ++ A T +P++
Sbjct: 519 NKDGTGVRVIVAGTLDINPDD 539
Score = 37.7 bits (87), Expect = 0.005
Identities = 44/223 (19%), Positives = 75/223 (33%), Gaps = 70/223 (31%)
Query: 35 W--WYESVHKS------TGFTSAREYPMPF--PMSLYDLLE--QSLPFYNMLRRNVRKTS 82
W ++ SV K+ G YP P L D LE + +P ML ++
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-ML--SIS--- 342
Query: 83 SLLKSPLPEPDLPVPANKNLLAWVGDEIVPRDDA-KVSVF---DSIVQGG-----DGVWE 133
+L + + + + N +L P ++S+ ++V G G+
Sbjct: 343 NLTQEQV-QDYVNK-TNSHL---------PAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 134 GLRVYNGKVFKLEEHLD--------RLVKGKQKFGKVIV----WYMELVIMVKQAIFRTL 181
LR K K LD R +K +F V + I + L
Sbjct: 392 TLR----KA-KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV---PASDLINKDL 443
Query: 182 IRNVLPEWKP-----PVYDNTHGVNLVTATTRRNSPNNLDSKI 219
++N + + PVYD G +L R ++ +I
Sbjct: 444 VKNNV-SFNAKDIQIPVYDTFDGSDL------RVLSGSISERI 479
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 8e-06
Identities = 50/320 (15%), Positives = 86/320 (26%), Gaps = 97/320 (30%)
Query: 62 DLLEQSLP-FYNMLRRNVRKTSSLLKSPLPEPD----LPVPANKN---LLAWV----GDE 109
D+L F + + + + KS L + + + + L W +E
Sbjct: 20 DILSVFEDAFVDNF--DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 110 IVPRDDAKVSVFDSIVQGGDGVWEGLRVYN----GKVFKLEEHLDRLVKGKQKFGKVIVW 165
+V + V + + + ++ E DRL Q F K V
Sbjct: 78 MV-----QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 166 YMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVN------LVTATTRRNSP-NNLDSK 218
++ +R L E +P GV + +D K
Sbjct: 133 RLQPY---------LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 219 IHHNNL------------LNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGR 266
I NL L +L +I+ N + D K S L K
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-- 241
Query: 267 VLTPHADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKI 326
P+ + CL LVL V + +
Sbjct: 242 ---PYEN-CL----------------LVL-------------LNVQNA----KAWNAFNL 264
Query: 327 DGRIVGDGKVGPVTQRIQKV 346
+I+ +T R ++V
Sbjct: 265 SCKIL-------LTTRFKQV 277
Score = 40.2 bits (93), Expect = 9e-04
Identities = 34/216 (15%), Positives = 68/216 (31%), Gaps = 39/216 (18%)
Query: 8 EDLDIPFQATMLRWEAGPKPIDGLWAKWWYESVHKSTGFTSAREYPMPFPMSLYDL-LEQ 66
IP L W K V+K ++ + P +S+ + LE
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVM-------VVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 67 SLPFYNM--LRRNVRKTSSLLKSPLPEPDLPVPANKNLLAW-VGDEIVPRDDA-KVSVFD 122
+ N L R++ ++ K+ DL P +G + + ++++F
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKT-FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 123 SI----------VQGGDGVWEG----------LRVYNGKVFKLEEHLDRLVKGKQKFGKV 162
+ ++ W L+ Y + + +RLV F
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--- 551
Query: 163 IVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTH 198
+ E +I K + L+R L +++ H
Sbjct: 552 LPKIEENLICSK---YTDLLRIALMAEDEAIFEEAH 584
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.042
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 75 RRNVRKTSSLLKSPLPEPDLPVPANKNLLA 104
++ ++K + LK L D PA LA
Sbjct: 19 KQALKKLQASLK--LYADD-SAPA----LA 41
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A
{Artificial gene}
Length = 56
Score = 26.6 bits (58), Expect = 2.6
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 213 NNLDSKIHHNNLLNNILAKIEGNNAN-AGDAIMLDKD 248
N + K+ N L NI+A++E +NAN D L+KD
Sbjct: 10 NRVAYKLKENAKLENIVARLENDNANLEKDIANLEKD 46
>1ilo_A Conserved hypothetical protein MTH895;
beta-alpha-beta-alpha-beta-BETA-alpha motif, structural
genomics, PSI; NMR
{Methanothermobacterthermautotrophicus str} SCOP:
c.47.1.1
Length = 77
Score = 26.6 bits (59), Expect = 3.8
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 277 PGITRATVMELVVKENLVLEERRISLSEFHTAD--EVWTTGTMGEITPVVKIDGRIVGDG 334
G ++E +E ++E I + ++ G P + +DG + G
Sbjct: 9 TGCANCQMLEKNARE--AVKELGIDAEFEKIKEMDQILEAGLTA--LPGLAVDGELKIMG 64
Query: 335 KVGPVTQRIQK 345
+V + I+K
Sbjct: 65 RV-ASKEEIKK 74
>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1,
GP1 octameric assembly, GP1 channel, DNA recognition,
DNA packaging; 1.65A {Enterobacteria phage SF6}
Length = 143
Score = 27.4 bits (60), Expect = 4.7
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 2 TLRSLCEDLDIPFQATMLRW 21
+L +C+ +P ++T+ RW
Sbjct: 33 SLLKVCKRPGMPDKSTVFRW 52
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure
initative, MCSG, PSI, protein structure initiative;
2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Length = 111
Score = 26.5 bits (58), Expect = 6.2
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 322 PVVKIDGRIVGDG--KVGPVTQRIQKVYKKE 350
P++ ++ V DG + +T+ I + E
Sbjct: 81 PLITMNDEYVADGYIQTKQITRFIDQKLVNE 111
>2wyo_A Glutathione synthetase; ligase, ATP-grAsp; HET: GSH; 3.15A
{Trypanosoma brucei}
Length = 562
Score = 28.0 bits (61), Expect = 6.4
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 52 YPMPFPMSLYDLLEQSLPFYNMLRRNVRKTSSLLKSPL 89
P + L P +N N + + L+ L
Sbjct: 52 QPSMISRGEFGTLCCMQPLWNEAVDNTARNFTFLRDAL 89
>3d7a_A UPF0201 protein PH1010; DUF54 family, unknown function; 1.90A
{Pyrococcus horikoshii}
Length = 138
Score = 26.4 bits (58), Expect = 9.8
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 172 MVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAK 231
VK+A+ N++P + +D V LV T + + L +L+
Sbjct: 22 KVKKAM-----LNLIPGLQFEAFDKGEYVILVGRTKDKRALQRLYELFRGQQILDTARMM 76
Query: 232 IEGNNANAGDAIMLDK 247
+E I + K
Sbjct: 77 LEEGYFGEEIIIKVHK 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,727,733
Number of extensions: 348116
Number of successful extensions: 871
Number of sequences better than 10.0: 1
Number of HSP's gapped: 822
Number of HSP's successfully gapped: 38
Length of query: 361
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 266
Effective length of database: 4,049,298
Effective search space: 1077113268
Effective search space used: 1077113268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)