RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 046821
(361 letters)
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 170 bits (431), Expect = 2e-51
Identities = 72/274 (26%), Positives = 122/274 (44%), Gaps = 28/274 (10%)
Query: 104 AWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRL----------- 152
D+IV ++ K+ D Q GDGV+E ++VYNG++F + EH+DRL
Sbjct: 3 TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITI 62
Query: 153 ---------------VKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNT 197
K + G + ++ V+ +
Sbjct: 63 PYTKDKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPL 122
Query: 198 HGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNAT 257
+ T L I NLL +LAK E + +L ++ V+E +++
Sbjct: 123 ENLEKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKG-CYEAILHRNNTVTEGSSS 181
Query: 258 NIFLVKKGRVLT-PHADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGT 316
N+F +K G + T P + L GITR V+ + N+ ++E + E DE++ T T
Sbjct: 182 NVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTST 241
Query: 317 MGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKE 350
EITPV++IDG+++ DGKVG T+++QK ++ +
Sbjct: 242 TSEITPVIEIDGKLIRDGKVGEWTRKLQKQFETK 275
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 167 bits (424), Expect = 5e-50
Identities = 77/286 (26%), Positives = 126/286 (44%), Gaps = 43/286 (15%)
Query: 104 AWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGK----VFKLEEHLDRLVKGKQKF 159
W E+V +DAKV V + G V+EG+R Y+ VF+ EH+ RL + +
Sbjct: 5 IWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIY 64
Query: 160 GKVIVWYMELVIMVKQAIFRTLIRNVLPEWK----------------------------- 190
+ + + +A + +N L
Sbjct: 65 RFPVSQSI---DELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAF 121
Query: 191 -----PPVYDNTHGVNLVTATTRRNSPNNLDS-KIHHNNLLNNILAKIEGNNANAGDAIM 244
G++ + ++ R +PN + + N L+++L E + I
Sbjct: 122 PWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIA 181
Query: 245 LDKDGYVSETNATNIFLVKKGRVLTPHA-DYCLPGITRATVMELVVKENLVLEERRISLS 303
LD +GY+SE N+F VK G + TP LPGITR +++L + + + E+ +S
Sbjct: 182 LDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRE 241
Query: 304 EFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKK 349
+ ADEV+ +GT EITPV +DG VG+G+ GPVT+RIQ+ +
Sbjct: 242 SLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFFG 287
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
[TaxId: 562]}
Length = 269
Score = 127 bits (319), Expect = 4e-35
Identities = 56/262 (21%), Positives = 94/262 (35%), Gaps = 31/262 (11%)
Query: 113 RDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIM 172
++V D Q GDG + RV +GKV L H+ RL Q+ ++ +L
Sbjct: 7 HKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDACQRLMISCDFWPQLEQE 66
Query: 173 VKQAIFRTLIRNV--------------------------LPEWKPPVYDNTHGVNLVTAT 206
+K + + + + + +
Sbjct: 67 MKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALS 126
Query: 207 TRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGR 266
R N + I H N L +L + NA +A++LD +G+V+E A N+F K
Sbjct: 127 PVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLDSEGWVTECCAANLFWRKGNV 186
Query: 267 VLTPHA-DYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVK 325
V TP + GI R + L+ + + L E + SL E ADE+ + + PV
Sbjct: 187 VYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPVCA 246
Query: 326 IDGRIVGDGKV----GPVTQRI 343
+ P+ +R
Sbjct: 247 CGDVSFSSATLYEYLAPLCERP 268
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 115 bits (287), Expect = 1e-29
Identities = 50/339 (14%), Positives = 105/339 (30%), Gaps = 68/339 (20%)
Query: 78 VRKTSSLLKSPLPEPDLP---VPANKNLLA------WVGDEIVPRDDAKVSVFDSIVQGG 128
+ T K P P L + L+ W I P + + S +
Sbjct: 10 LEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYS 69
Query: 129 DGVWEGLRVYNGK-----VFKLEEHLDRLVKGKQKFGKVIVW-------YMELVIMVKQA 176
++EG++ + GK +F+ ++DR+++ + L+ + K
Sbjct: 70 LQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDW 129
Query: 177 IFRTLIRNVL---------------------------PEWKPPVYDNTHGVNLVTATTRR 209
+ ++ P + V+L+
Sbjct: 130 VPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFI 189
Query: 210 NSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLD--KDGYVSETNATNIFLVKKGR- 266
+ + + + ++ D ++E NIF+
Sbjct: 190 RAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHED 249
Query: 267 -----VLTPHADYCLPGITRATVMELVVKE-NLVLEERRISLSEFHTA------DEVWTT 314
V P LPG+ R +++++ + ER I++ + A EV+ +
Sbjct: 250 GVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGS 309
Query: 315 GTMGEITPVVKIDGR----IVGDGKVGP-VTQRIQKVYK 348
GT ++ PV +I + + + GP + R QK K
Sbjct: 310 GTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKELK 348
>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus
aureus [TaxId: 1280]}
Length = 111
Score = 27.5 bits (61), Expect = 1.1
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 322 PVVKIDGRIVGDG--KVGPVTQRIQKVYKKE 350
P++ ++ V DG + +T+ I + E
Sbjct: 81 PLITMNDEYVADGYIQTKQITRFIDQKLVNE 111
>d2vgls_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly
protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 142
Score = 26.8 bits (59), Expect = 2.8
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 22/121 (18%)
Query: 160 GKVIV--WYMELVIMVKQAIFRTLIRNVL---------PEWKPP--VYDNTHGVNLVTAT 206
GK + WYM+ KQ + + V E++ +Y G+
Sbjct: 12 GKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICV 71
Query: 207 TRRNSPNNLDSKIHH-NNLLNNILAKIEGNNA--NAGDAI-----MLDKDGYVSETNATN 258
++ IH+ +LN + + N M G + ET+ T
Sbjct: 72 DVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL-AGEIRETSQTK 130
Query: 259 I 259
+
Sbjct: 131 V 131
>d1dgsa2 b.40.4.6 (A:315-400) NAD+-dependent DNA ligase {Thermus
filiformis [TaxId: 276]}
Length = 86
Score = 25.6 bits (56), Expect = 3.5
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 309 DEVWTTGTMGEITPVVKIDGRIVGD 333
D V+ G G +TPV ++ +
Sbjct: 10 DVVFQVGRTGRVTPVGVLEPVFIEG 34
>d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione
synthetase ATP-binding domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 373
Score = 26.0 bits (57), Expect = 8.8
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 52 YPMPFPMSLYDLLEQSLPFYNML 74
YP P P +D Q P +N L
Sbjct: 44 YPTPIPRKCFDEAVQIQPVFNEL 66
>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione
synthetase ATP-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 370
Score = 25.9 bits (57), Expect = 9.0
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 52 YPMPFPMSLYDLLEQSLPFYNMLRRNVRKTSSLLKSPL 89
+P P +L + +N+L V + ++ L+ L
Sbjct: 51 FPSLVPSALLEQAYAVQMDFNLLVDAVSQNAAFLEQTL 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,410,081
Number of extensions: 67395
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 13
Length of query: 361
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,226,816
Effective search space: 337374400
Effective search space used: 337374400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)