BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046822
(971 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAEL 67
L V+V+ A +L+ D G S PF +E L+T YK+LNP WN+ F + DI ++
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDV 74
Query: 68 PYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEIS 127
+EV VF+E +FLGKV P L +G+ Y L+ + L +G I
Sbjct: 75 ----LEVTVFDE-DGDKPPDFLGKVAIPL--LSIRDGQPNC--YVLKNKDLEQAFKGVIY 125
Query: 128 LKL 130
L++
Sbjct: 126 LEM 128
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWE 656
+G+L++ +L A L+ F G D +C+ + G ++T TV +L+P+WN+ +T+
Sbjct: 12 VGILQVKVLKAADLLAADFS----GKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP 67
Query: 657 VFDPCTVITVGVFD 670
+ D V+ V VFD
Sbjct: 68 IKDIHDVLEVTVFD 81
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
L+V V++A D++ D F L ++GN L+T + ++L NP WN+
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLL----ELGNDRLQTH----TVYKNL-NPEWNKVFT 65
Query: 490 FVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAV 526
F + + D L ++V D G + +GKV IP+ ++
Sbjct: 66 FPIKD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 18/136 (13%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
K+ + V+ A L KD GSS P+V V+ K RT+ Y +LNP+W E F+ + ++
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSD 77
Query: 67 LPYKHIEVNVFNERRSSNSR----------NFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116
I+V V +E SR +FLG+ L GE Y L+KR
Sbjct: 78 ----RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL---SGEMDV-WYNLDKR 129
Query: 117 SLFSHIRGEISLKLFV 132
+ S + G I L + V
Sbjct: 130 TDKSAVSGAIRLHISV 145
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 593 WKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQ 652
W I + ++ A GL + K GS D Y + G+ RT+T+ +L+P W E
Sbjct: 15 WSAKISIT---VVCAQGLQA----KDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEEN 67
Query: 653 YTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSR--IGKVRIRLSTL 699
+ +E + I V V D K+ + R+S +G+ I + TL
Sbjct: 68 FHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 2 GDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQI------LRTQVKYKDLNPIWNE 55
D + V+VIA L KD G+S P+V V + ++T+ K LNP WNE
Sbjct: 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNE 63
Query: 56 KLVFDVPDIAELPYKH-IEVNVFNERRSSNSRNFLGKVRAPCSQL----CKNEGEATAQL 110
+++F V LP +H I VF+E R + +FLG+V P L + E T +
Sbjct: 64 EILFRV-----LPQRHRILFEVFDENRLTRD-DFLGQVDVPLYPLPTENPRMERPYTFKD 117
Query: 111 YTLEKRSLFSHIRGEISLKL 130
+ L RS S ++G + LK+
Sbjct: 118 FVLHPRSHKSRVKGYLRLKM 137
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 636 VRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIR 695
V+T+T+ SL+PKWNE+ + V I VFD L RD +G+V +
Sbjct: 48 VQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRL---------TRDDFLGQVDVP 98
Query: 696 LSTLES-----DRVYTHSYPLLMLHPSGVKK--MGELHLAVRFSCAN 735
L L + +R YT + +LHP K G L L + + N
Sbjct: 99 LYPLPTENPRMERPYT--FKDFVLHPRSHKSRVKGYLRLKMTYLPKN 143
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 468 TRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPV 523
T + + +SL NP WNE++LF V P +L V D +D+ +G+V +P+
Sbjct: 46 TSVQTKTIKKSL-NPKWNEEILFRVL-PQRHRILFEVFDENRLTRDDFLGQVDVPL 99
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 15/100 (15%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQIL-----------RTQVKYKDLNPI 52
L++ ++ A NL+P+D G S PFV+V Q++ RT+ K LNP
Sbjct: 19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78
Query: 53 WNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKV 92
WN+ +++ + +L K +EV V++ R S S +FLG+V
Sbjct: 79 WNQTVIYKSISMEQLMKKTLEVTVWDYDRFS-SNDFLGEV 117
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFD 60
G ++LVV ++ A +L KD G S P+V++ K+ +T+V K LNPI+NE F
Sbjct: 19 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS 78
Query: 61 VPDIAELPYKHIEVNVFNERRSSNSRNFLGKV 92
VP +AEL + + +V++ R S + +G+V
Sbjct: 79 VP-LAELAQRKLHFSVYDFDRFSR-HDLIGQV 108
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILR-----TQVKYKDLNPIWNEKLVFDV 61
L V +I A NL D G S P+V+ + R T +K LNP +NE LVFDV
Sbjct: 155 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 213
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 419 SKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRS 478
S YL P L V++I+A ++ K + F + + KA + ++ + + S ++
Sbjct: 145 SLCYL-PTAGLLTVTIIKASNL----KAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 199
Query: 479 LSNPCWNEDLLFVVA-EPFEDY-LLISVEDHVGPGKDEIVG 517
NP +NE L+F VA E E+ L I+V D+ G +E++G
Sbjct: 200 TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIG 240
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFD 60
G ++LVV ++ A +L KD G S P+V++ K+ +T+V K LNPI+NE F
Sbjct: 18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS 77
Query: 61 VPDIAELPYKHIEVNVFNERRSSNSRNFLGKV 92
VP +AEL + + +V++ R S + +G+V
Sbjct: 78 VP-LAELAQRKLHFSVYDFDRFSR-HDLIGQV 107
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILR-----TQVKYKDLNPIWNEKLVFDV 61
L V +I A NL D G S P+V+ + R T +K LNP +NE LVFDV
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 212
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 419 SKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRS 478
S YL P L V++I+A ++ K + F + + KA + ++ + + S ++
Sbjct: 144 SLCYL-PTAGLLTVTIIKASNL----KAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 198
Query: 479 LSNPCWNEDLLFVVA-EPFEDY-LLISVEDHVGPGKDEIVG 517
NP +NE L+F VA E E+ L I+V D+ G +E++G
Sbjct: 199 TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIG 239
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 18/135 (13%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEF-------EKQILRTQVKYKDLNPIWNEKLVFD 60
L V+V++ +L KD G+S P+V++ E +++T+ K LNP WNE+ F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 61 VPDIAELPYKH-IEVNVFNERRSSNSRNFLGKVRAPCSQLCKN----EGEATAQLYTLEK 115
V P H + VF+E R + +FLG+V P S L E T + + L
Sbjct: 83 VN-----PSNHRLLFEVFDENRLTRD-DFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRP 136
Query: 116 RSLFSHIRGEISLKL 130
RS S ++G + LK+
Sbjct: 137 RSHKSRVKGFLRLKM 151
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 636 VRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIR 695
V+T+T+ +L+PKWNE++ + V + VFD L RD +G+V +
Sbjct: 62 VQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRL---------TRDDFLGQVDVP 112
Query: 696 LSTLES-----DRVYTHSYPLL--MLHPSGVKKMGELHLA 728
LS L + +R YT LL H S VK L +A
Sbjct: 113 LSHLPTEDPTMERPYTFKDFLLRPRSHKSRVKGFLRLKMA 152
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLL 489
LRV V+ D+ D A P + V ++ + + + NP WNE+
Sbjct: 23 LRVKVVSGIDLAKKDIFGASD--PYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFY 80
Query: 490 FVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVS 524
F V P LL V D +D+ +G+V +P+S
Sbjct: 81 FRV-NPSNHRLLFEVFDENRLTRDDFLGQVDVPLS 114
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 10 VEVIAAHNLMPKDGEGSSSPFVEVEFEKQI------LRTQVKYKDLNPIWNEKLVFDVPD 63
V VIA L KD G+S P+V V + ++T+ K LNP WNE+++F V
Sbjct: 24 VRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVH- 82
Query: 64 IAELPYKH-IEVNVFNERRSSNSRNFLGKVRAPCSQLCKN----EGEATAQLYTLEKRSL 118
P +H + VF+E R + +FLG+V P L E T + + L RS
Sbjct: 83 ----PQQHRLLFEVFDENRLTRD-DFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSH 137
Query: 119 FSHIRGEISLKL 130
S ++G + LK+
Sbjct: 138 KSRVKGYLRLKM 149
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 636 VRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIR 695
V+T+T+ SL+PKWNE+ + V + VFD N RD +G+V +
Sbjct: 60 VQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFD---------ENRLTRDDFLGQVDVP 110
Query: 696 LSTLES-----DRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732
L L + +R YT + +LHP K + +L ++ +
Sbjct: 111 LYPLPTENPRLERPYT--FKDFVLHPRSHKSRVKGYLRLKMT 150
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 468 TRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPV 523
T + + +SL NP WNE++LF V P + LL V D +D+ +G+V +P+
Sbjct: 58 TSVQTKTIKKSL-NPKWNEEILFRV-HPQQHRLLFEVFDENRLTRDDFLGQVDVPL 111
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDVPDI 64
L V+++ A L KD G+S PFV++ +K L T+VK K+LNP WNE +F+
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 65 AELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQL 99
++ + + + V + R S + + +G+V P +++
Sbjct: 88 EKVVQRILYLQVLDYDRFSRN-DPIGEVSIPLNKV 121
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDVPD 63
+L+V +I A L D G+S P+V+V +K+ T+V K LNP++NE+ F VP
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP- 93
Query: 64 IAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS 97
+EL K + + V++ R S + +G+ + P +
Sbjct: 94 YSELGGKTLVMAVYDFDRFS-KHDIIGEFKVPMN 126
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDVPD 63
+L+V +I A L D G+S P+V+V +K+ T+V K LNP++NE+ F VP
Sbjct: 43 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP- 101
Query: 64 IAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS 97
+EL K + + V++ R S + +G+ + P +
Sbjct: 102 YSELGGKTLVMAVYDFDRFS-KHDIIGEFKVPMN 134
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDVPD 63
+L+V +I A L D G+S P+V+V +K+ T+V K LNP++NE+ F VP
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP- 93
Query: 64 IAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS 97
+EL K + + V++ R S + +G+ + P +
Sbjct: 94 YSELGGKTLVMAVYDFDRFS-KHDIIGEFKVPMN 126
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDVPD 63
+L+V +I A L D G+S P+V+V +K+ T+V K LNP++NE+ F VP
Sbjct: 20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP- 78
Query: 64 IAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS 97
+EL K + + V++ R S + +G+ + P +
Sbjct: 79 YSELAGKTLVMAVYDFDRFS-KHDIIGEFKVPMN 111
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-----ILRTQVKYKDLNPIWNEKLVFDV 61
KL V ++ A NL D G S P+V++ + +T +K LNP +NE F+V
Sbjct: 151 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210
Query: 62 P 62
P
Sbjct: 211 P 211
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKLVFDVPD 63
+L+V +I A L D G+S P+V+V +K+ T+V K LNP++NE+ F VP
Sbjct: 18 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP- 76
Query: 64 IAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCS 97
+EL K + + V++ R S + +G+ + P +
Sbjct: 77 YSELGGKTLVMAVYDFDRFS-KHDIIGEFKVPMN 109
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-------EKQILRTQVKYKDLNPIWNEKLV 58
+++ V V A NL+P D G S P+V+++ KQ RT VK LNP+WNE V
Sbjct: 20 DEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRT-VKAT-LNPVWNETFV 77
Query: 59 FDV-PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117
F++ P E + + V V++ R+S + +F+G + S+L K + +L E+
Sbjct: 78 FNLKPGDVE---RRLSVEVWDWDRTSRN-DFMGAMSFGVSELLKAPVDGWYKLLNQEEGE 133
Query: 118 LFS 120
++
Sbjct: 134 YYN 136
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVP 62
L+V +I +L D G S PFV++ + K +TQ+K K LNP +NE+ +D+
Sbjct: 39 LIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 63 DIAELPYKHIEVNVFN 78
++L K ++++V++
Sbjct: 99 H-SDLAKKSLDISVWD 113
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVP 62
L+V +I +L D G S PFV++ + K +TQ+K K LNP +NE+ +D+
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76
Query: 63 DIAELPYKHIEVNVFN 78
++L K ++++V++
Sbjct: 77 H-SDLAKKSLDISVWD 91
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVP 62
L+V +I +L D G S PFV++ + K +TQ+K K LNP +NE+ +D+
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 63 DIAELPYKHIEVNVFN 78
++L K ++++V++
Sbjct: 99 H-SDLAKKSLDISVWD 113
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPD 63
G +L+V VI A L G S+P+ E+ Q T+ LNP WN F + D
Sbjct: 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKD 444
Query: 64 IAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQL 99
+ Y+ + +R + +FLG+ P +++
Sbjct: 445 L----YQDVLCLTLFDRDQFSPDDFLGRTEIPVAKI 476
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWN 650
IG L + ++ AT L K G + YC G + TRT+ D+L+PKWN
Sbjct: 386 IGRLMVHVIEATELKACK----PNGKSNPYCEISMGSQSYTTRTIQDTLNPKWN 435
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 430 LRVSVIEAQDIV---PGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNE 486
L V VIEA ++ P K + + + +G+Q TR + NP WN
Sbjct: 389 LMVHVIEATELKACKPNGKSNP-------YCEISMGSQSYTTRTIQDTL-----NPKWNF 436
Query: 487 DLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSR 538
+ F + + ++D L +++ D D+ +G+ IPV+ + + K ++R
Sbjct: 437 NCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTR 488
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 12 VIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
+I A L P D G + P+V++ + LRT+ NP+WNE L + +
Sbjct: 35 IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94
Query: 67 LPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNE 103
+ K + ++V +E + ++ F+G+ R +L N+
Sbjct: 95 MQRKTLRISVCDEDKFGHNE-FIGETRFSLKKLKANQ 130
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 12 VIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVFDVPDIAE 66
+I A L P D G + P+V++ + LRT+ NP+WNE L + +
Sbjct: 33 IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 92
Query: 67 LPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNE 103
+ K + ++V +E + ++ F+G+ R +L N+
Sbjct: 93 MQRKTLRISVCDEDKFGHNE-FIGETRFSLKKLKANQ 128
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVFD 60
EKL V V A NL+P D G S P+V+++ + +T+ LNP WNE F
Sbjct: 17 EKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK 76
Query: 61 V-PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLF 119
+ P + + + V +++ R++ + +F+G + S+L K +L E+ +
Sbjct: 77 LKPSDKD---RRLSVEIWDWDRTTRN-DFMGSLSFGVSELMKMPASGWYKLLNQEEGEYY 132
Query: 120 S 120
+
Sbjct: 133 N 133
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVFD 60
EKL V V A NL+P D G S P+V+++ + +T+ LNP WNE F
Sbjct: 16 EKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK 75
Query: 61 V-PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLF 119
+ P + + + V +++ R++ + +F+G + S+L K +L E+ +
Sbjct: 76 LKPSDKD---RRLSVEIWDWDRTTRN-DFMGSLSFGVSELMKMPASGWYKLLNQEEGEYY 131
Query: 120 S 120
+
Sbjct: 132 N 132
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVFD 60
EKL V V A NL+P D G S P+V+++ + +T+ LNP WNE F
Sbjct: 18 EKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK 77
Query: 61 V-PDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLF 119
+ P + + + V +++ R++ + +F G + S+L K +L E+ +
Sbjct: 78 LKPSDKD---RRLSVEIWDWDRTTRN-DFXGSLSFGVSELXKXPASGWYKLLNQEEGEYY 133
Query: 120 S 120
+
Sbjct: 134 N 134
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKY-----KDLNPIWNEKLVFDVP 62
++V +I A NL D G+S P+V+V + R + K ++LNPI+NE FD+P
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 63 DIAELPYKHIEVNVFNERRSSNSRNFLGKV 92
+L I + V ++ + S + + +GK+
Sbjct: 78 -TEKLRETTIIITVMDKDKLSRN-DVIGKI 105
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVF 59
+E L+V V A NL+P D G S P+V+++ + +T+ LNP WNE F
Sbjct: 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLF 119
+ + + + + V +++ +S + +F+G + S+L K + +L + E+ F
Sbjct: 90 QLKESDK--DRRLSVEIWDWDLTSRN-DFMGSLSFGISELQKAGVDGWFKLLSQEEGEYF 146
Query: 120 S 120
+
Sbjct: 147 N 147
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVF 59
+E L+V V A NL+P D G S P+V+++ + +T+ LNP WNE F
Sbjct: 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRF 230
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLF 119
+ + + + + V +++ +S + +F+G + S+L K + +L + E+ F
Sbjct: 231 QLKESDK--DRRLSVEIWDWDLTSRN-DFMGSLSFGISELQKAGVDGWFKLLSQEEGEYF 287
Query: 120 S 120
+
Sbjct: 288 N 288
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVFDV 61
+L+V ++ A +L ++ +P+V++ F +K RT+ K L P WN+ ++
Sbjct: 22 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 81
Query: 62 PDIAELPYKHIEVNVFNERR-SSNSRNFLGKV 92
E + +E+ ++++ R FLG++
Sbjct: 82 VHRREFRERMLEITLWDQARVREEESEFLGEI 113
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVFDV 61
+L+V ++ A +L ++ +P+V++ F +K RT+ K L P WN+ ++
Sbjct: 19 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 78
Query: 62 PDIAELPYKHIEVNVFNERR-SSNSRNFLGKV 92
E + +E+ ++++ R FLG++
Sbjct: 79 VHRREFRERMLEITLWDQARVREEESEFLGEI 110
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEF---EKQI--LRTQVKYKDLNPIWNEKLVFDVP 62
L V V+ A +L D G S P+V+V +K+I +T VK N ++NE VFD+P
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 63 DIAELPYKHIEVNVFNERRSSNS 85
L +E V + R S +
Sbjct: 92 -CESLEEISVEFLVLDSERGSRN 113
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 3 DGKEKLVVEVIAAHNLMPKDGEGSS-SPFVEVEFEKQ-----ILRTQVKYKDLNPIWNEK 56
D K +L VEVI A +L K G S+ +P+V+V + +T++ K L+P++ +
Sbjct: 27 DKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQS 86
Query: 57 LVFD 60
LVFD
Sbjct: 87 LVFD 90
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPD 63
G ++ ++ + + +PK G P V V F+ + +T+ +LNP+WNE L FD+
Sbjct: 4 GSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRG 63
Query: 64 I 64
I
Sbjct: 64 I 64
>pdb|1MLU|A Chain A, Nitric Oxide Recombination To Double Mutants Of Myoglobin:
The Role Of Ligand Diffusion In A Fluctuating Heme
Pocket
Length = 154
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 23/87 (26%)
Query: 112 TLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNKKLXXXXXXXXXX 171
TLEK F H++ E +K E +KKGG V++LT A KK
Sbjct: 40 TLEKFDRFKHLKTEAEMK-----ASEDLKKGG-VTALTALGAILKKK------------- 80
Query: 172 XXHFGHQDMMSKPTHQQQSQNHVKPME 198
GH + KP Q + H P++
Sbjct: 81 ----GHHEAELKPLAQSHATKHKIPIK 103
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination
Site In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination
Sites In Synaptotagmin I C2b Domain
Length = 159
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-----ILRTQVKYKDLNPIWNEKLVFDV 61
KL V ++ A NL D G S P+V++ + +T +K LNP +NE F+V
Sbjct: 26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 85
Query: 62 P 62
P
Sbjct: 86 P 86
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-----ILRTQVKYKDLNPIWNEKLVFDV 61
KL V ++ A NL D G S P+V++ + +T +K LNP +NE F+V
Sbjct: 19 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 78
Query: 62 P 62
P
Sbjct: 79 P 79
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-----ILRTQVKYKDLNPIWNEKLVFDV 61
KL V ++ A NL D G S P+V++ + +T +K LNP +NE F+V
Sbjct: 18 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 77
Query: 62 P 62
P
Sbjct: 78 P 78
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 6 EKLVVEVIAAHNLMPKD-GEGSSSPFVEVEF-----EKQILRTQVKYKDLNPIWNEKLVF 59
+ LVV V H L D + S+P+V+ + +T +K +NP+++E L +
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82
Query: 60 DVPDIAELPYKHIEVNVFNERRSSNSRNFLGKV 92
++P+ + L + ++ +V++ R + FLG+
Sbjct: 83 EIPE-SLLAQRTLQFSVWHHGRFGRN-TFLGEA 113
>pdb|1MOB|A Chain A, High-Resolution Crystal Structures Of Distal Histidine
Mutants Of Sperm Whale Myoglobin
pdb|2MGA|A Chain A, High Resolution Crystal Structures Of Five Distal
Histidine Mutants Of Sperm Whale Myoglobin
pdb|2MGB|A Chain A, High Resolution Crystal Structures Of Five Distal
Histidine Mutants Of Sperm Whale Myoglobin
Length = 154
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 23/87 (26%)
Query: 112 TLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNKKLXXXXXXXXXX 171
TLEK F H++ E +K E +KKGG V+ LT A KK
Sbjct: 40 TLEKFDRFKHLKTEAEMK-----ASEDLKKGG-VTVLTALGAILKKK------------- 80
Query: 172 XXHFGHQDMMSKPTHQQQSQNHVKPME 198
GH + KP Q + H P++
Sbjct: 81 ----GHHEAELKPLAQSHATKHKIPIK 103
>pdb|1O16|A Chain A, Recombinant Sperm Whale Myoglobin H64dV68SD122N MUTANT
(Met)
Length = 154
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 23/87 (26%)
Query: 112 TLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNKKLXXXXXXXXXX 171
TLEK F H++ E +K +E++ K G V+SLT A KK
Sbjct: 40 TLEKFDRFKHLKTEAEMK----ASEDLKKDG--VTSLTALGAILKKK------------- 80
Query: 172 XXHFGHQDMMSKPTHQQQSQNHVKPME 198
GH + KP Q + H P++
Sbjct: 81 ----GHHEAELKPLAQSHATKHKIPIK 103
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 8 LVVEVIAAHNLMP---KDGE----GSSSPFVEVEF---EKQILRTQVKYKDLNPIWNEKL 57
L V VI A +L P DG S+P+V++ +K +T VK K P++ E+
Sbjct: 28 LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY 87
Query: 58 VFDVP 62
F++P
Sbjct: 88 TFEIP 92
>pdb|3K9Z|A Chain A, Rational Design Of A Structural And Functional Nitric
Oxide Reductase
Length = 153
Score = 29.3 bits (64), Expect = 10.0, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 23/87 (26%)
Query: 112 TLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNKKLXXXXXXXXXX 171
TLEK F H++ E +K +E++ K G V+ LT A KK
Sbjct: 39 TLEKHDRFKHLKTEAEMK----ASEDLKKHG--VTELTALGAILKKK------------- 79
Query: 172 XXHFGHQDMMSKPTHQQQSQNHVKPME 198
GH + KP Q + H P++
Sbjct: 80 ----GHHEAELKPLAQSHATKHKIPIK 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,667,603
Number of Sequences: 62578
Number of extensions: 1127387
Number of successful extensions: 2253
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2168
Number of HSP's gapped (non-prelim): 93
length of query: 971
length of database: 14,973,337
effective HSP length: 108
effective length of query: 863
effective length of database: 8,214,913
effective search space: 7089469919
effective search space used: 7089469919
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)